X.AnalysisProc	Normal	VariantID	Chrom	Pos	Ref	Alt	Gene	Transcript	RNA	CDS	Protein	Effect	DIS_sample_PD9768b_depth	DIS_MtAll_PD9768b	DIS_MtAllPct_PD9768b	DIS_sample_PD9768c_depth	DIS_MtAll_PD9768c	DIS_MtAllPct_PD9768c	VAL_sample_PD9768b_depth	VAL_MtAll_PD9768b	VAL_MtAllPct_PD9768b	VAL_sample_PD9768c_depth	VAL_MtAll_PD9768c	VAL_MtAllPct_PD768c	pbinom_dis_c	subclonal.CN	nMaj1	nMin1	frac1	nMaj2	nMin2	frac2	phase	mutation.copy.number	subclonal.fraction	no.chrs.bearing.mut	prob.cluster1	prob.cluster2	prob.cluster3	most.likely.cluster	pbinom_dis_b	pbinom_val_c	pbinom_val_b	VAL_LOCUS	val_status_a2	current.conf.status	val.platform
1352322	PD9768b	1213999496	1	13048700	G	A	PRAMEF23	ENST00000376192	r.?	-	-	intronic	21	0	0	16	4	25	0	0	NA	0	0	NA	1.08E-06	2.087633076	2	0	0.912366924	2	1	0.087633076	unphased	1.158271905	1.158271905	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1213999498	1	13123669	G	A	-	-	-	-	-	-	11	0	0	29	6	20.68965517	0	0	NA	0	0	NA	6.72E-09	2.087633076	2	0	0.912366924	2	1	0.087633076	unphased	0.958569853	0.958569853	1	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214000354	1	19017304	G	A	PAX7	CCDS44074.1	r.?	-	-	intronic	16	0	0	70	21	30	0	0	NA	0	0	NA	1.45E-31	4.399047721	2	2	0.600952279	3	2	0.399047721	unphased	2.08335068	1.04167534	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214000619	1	22290299	G	A	-	-	-	-	-	-	12	0	0	59	27	45.76271186	0	0	NA	0	0	NA	3.09E-46	2.076176848	2	0	0.923823152	2	1	0.076176848	unphased	2.114983858	1.057491929	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214001405	1	35832718	G	A	ZMYM4	CCDS389.1	r.?	-	-	intronic	11	0	0	82	29	35.36585366	0	0	NA	0	0	NA	1.81E-45	3.641171102	2	1	0.358828898	2	2	0.641171102	unphased	2.187952973	1.093976487	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214001436	1	36143867	G	A	-	-	-	-	-	-	14	0	0	61	22	36.06557377	0	0	NA	0	0	NA	4.38E-35	3.641171102	2	1	0.358828898	2	2	0.641171102	unphased	2.231242037	1.115621018	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214001924	1	41202533	T	A	NFYC	CCDS44120.1	r.?	-	-	intronic	9	0	0	37	10	27.02702703	0	0	NA	0	0	NA	3.01E-15	3.641171102	2	1	0.358828898	2	2	0.641171102	unphased	1.672060986	1.672060986	1	0	0.995	0.005	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214002401	1	47420214	C	A	-	-	-	-	-	-	37	0	0	65	15	23.07692308	0	0	NA	0	0	NA	5.00E-21	3.641171102	2	1	0.358828898	2	2	0.641171102	unphased	1.427682842	1.427682842	1	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214002522	1	49158773	C	A	AGBL4	CCDS44137.1	r.?	-	-	intronic	29	0	0	68	18	26.47058824	0	0	NA	0	0	NA	3.83E-26	3.641171102	2	1	0.358828898	2	2	0.641171102	unphased	1.637636201	0.8188181	2	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214002718	1	52406906	G	A	RAB3B	CCDS560.1	r.?	-	-	intronic	35	0	0	81	16	19.75308642	0	0	NA	0	0	NA	3.77E-21	3.641171102	2	1	0.358828898	2	2	0.641171102	unphased	1.222049511	1.222049511	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214003043	1	56118492	G	A	-	-	-	-	-	-	28	0	0	73	16	21.91780822	0	0	NA	0	0	NA	6.15E-22	3.641171102	2	1	0.358828898	2	2	0.641171102	unphased	1.355972745	1.355972745	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214003051	1	56252776	C	A	-	-	-	-	-	-	44	0	0	74	16	21.62162162	0	0	NA	0	0	NA	7.81E-22	3.641171102	2	1	0.358828898	2	2	0.641171102	unphased	1.337648789	1.337648789	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214003156	1	57998955	T	A	DAB1	CCDS607.1	r.?	-	-	intronic	34	0	0	65	14	21.53846154	0	0	NA	2	0	0	2.93E-19	3.641171102	2	1	0.358828898	2	2	0.641171102	unphased	1.332503986	1.332503986	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214003355	1	61154456	T	A	-	-	-	-	-	-	35	0	0	79	23	29.11392405	0	0	NA	0	0	NA	4.43E-34	3.641171102	2	1	0.358828898	2	2	0.641171102	unphased	1.801169492	0.900584746	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214003974	1	69251556	C	A	-	-	-	-	-	-	38	0	0	71	17	23.94366197	0	0	NA	0	0	NA	6.12E-24	3.641171102	2	1	0.358828898	2	2	0.641171102	unphased	1.481304733	1.481304733	1	0	0.995	0.005	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214003992	1	69584522	G	A	-	-	-	-	-	-	25	0	0	40	10	25	0	0	NA	0	0	NA	7.22E-15	3.641171102	2	1	0.358828898	2	2	0.641171102	unphased	1.546656412	1.546656412	1	0	0.99625	0.00375	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214004037	1	70129138	C	A	LRRC7	ENST00000310961	r.?	-	-	intronic	29	0	0	73	12	16.43835616	0	0	NA	0	0	NA	3.39E-15	3.641171102	2	1	0.358828898	2	2	0.641171102	unphased	1.016979559	1.016979559	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214004042	1	70150731	G	A	LRRC7	ENST00000310961	r.?	-	-	intronic	38	0	0	72	8	11.11111111	0	0	NA	0	0	NA	3.52E-09	3.641171102	2	1	0.358828898	2	2	0.641171102	unphased	0.68740285	1.072105164	0.641171102	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214004270	1	73539360	G	A	-	-	-	-	-	-	19	0	0	53	15	28.30188679	0	0	NA	0	0	NA	1.60E-22	3.641171102	2	1	0.358828898	2	2	0.641171102	unphased	1.750931787	0.875465894	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214004323	1	74127597	G	A	-	-	-	-	-	-	40	0	0	66	20	30.3030303	0	0	NA	0	0	NA	3.11E-30	3.641171102	2	1	0.358828898	2	2	0.641171102	unphased	1.874735045	0.937367522	2	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214004407	1	75199076	G	A	CRYZ	CCDS665.1	r.17c>u	c.?	p.?	5'UTR variant	9	0	0	60	18	30	0	0	NA	0	0	NA	2.89E-27	3.641171102	2	1	0.358828898	2	2	0.641171102	unphased	1.855987694	0.927993847	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214004503	1	76549069	G	A	ST6GALNAC3	CCDS672.1	r.?	-	-	intronic	31	0	0	76	11	14.47368421	0	0	NA	0	0	NA	2.08E-13	3.641171102	2	1	0.358828898	2	2	0.641171102	unphased	0.89543266	0.89543266	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214005010	1	82783630	G	A	-	-	-	-	-	-	28	0	0	58	20	34.48275862	0	0	NA	0	0	NA	1.47E-31	3.641171102	2	1	0.358828898	2	2	0.641171102	unphased	2.133319189	1.066659594	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214005262	1	85539565	C	A	WDR63	CCDS702.1	r.?	-	-	intronic	29	0	0	65	15	23.07692308	0	0	NA	0	0	NA	5.00E-21	3.641171102	2	1	0.358828898	2	2	0.641171102	unphased	1.427682842	1.427682842	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214005290	1	85742960	G	A	BCL10	CCDS704.1	r.?	-	-	intronic	19	0	0	77	24	31.16883117	0	0	NA	0	0	NA	2.53E-36	3.641171102	2	1	0.358828898	2	2	0.641171102	unphased	1.928298903	0.964149452	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214005374	1	86783252	G	A	-	-	-	-	-	-	37	0	0	66	17	25.75757576	0	0	NA	0	0	NA	1.52E-24	3.641171102	2	1	0.358828898	2	2	0.641171102	unphased	1.593524788	1.172719237	1.358828898	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214005396	1	87201974	G	A	SH3GLB1	CCDS710.1	r.?	-	-	intronic	30	0	0	69	18	26.08695652	0	0	NA	0	0	NA	5.16E-26	3.641171102	2	1	0.358828898	2	2	0.641171102	unphased	1.613902343	1.187715647	1.358828898	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214005871	1	93424664	G	A	FAM69A	CCDS44173.1	r.?	-	-	intronic	27	0	0	65	25	38.46153846	0	0	NA	0	0	NA	1.60E-40	3.641171102	2	1	0.358828898	2	2	0.641171102	unphased	2.379471403	1.189735702	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214006262	1	98915569	T	A	-	-	-	-	-	-	39	0	0	61	22	36.06557377	0	0	NA	0	0	NA	4.38E-35	3.641171102	2	1	0.358828898	2	2	0.641171102	unphased	2.231242037	1.115621018	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214006438	1	101470372	G	A	DPH5	CCDS41358.1	r.?	-	-	intronic	34	0	0	73	18	24.65753425	0	0	NA	0	0	NA	1.62E-25	3.641171102	2	1	0.358828898	2	2	0.641171102	unphased	1.525469338	1.122635337	1.358828898	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214006574	1	103763895	G	A	-	-	-	-	-	-	36	0	0	74	18	24.32432432	0	0	NA	0	0	NA	2.13E-25	3.641171102	2	1	0.358828898	2	2	0.641171102	unphased	1.504854887	1.10746459	1.358828898	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214006580	1	103921438	T	A	-	-	-	-	-	-	33	0	0	72	26	36.11111111	0	0	NA	0	0	NA	3.29E-41	3.641171102	2	1	0.358828898	2	2	0.641171102	unphased	2.234059262	1.117029631	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214006658	1	105147371	C	A	-	-	-	-	-	-	33	0	0	54	11	20.37037037	2	0	0	0	0	NA	3.84E-15	3.641171102	2	1	0.358828898	2	2	0.641171102	unphased	1.260238558	1.260238558	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214006682	1	105444868	C	A	-	-	-	-	-	-	35	0	0	62	25	40.32258065	0	0	NA	0	0	NA	3.68E-41	3.641171102	2	1	0.358828898	2	2	0.641171102	unphased	2.494607116	1.247303558	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214006687	1	105534842	C	A	-	-	-	-	-	-	42	0	0	68	9	13.23529412	0	0	NA	0	0	NA	7.38E-11	3.641171102	2	1	0.358828898	2	2	0.641171102	unphased	0.8188181	0.8188181	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214006825	1	107634906	T	A	-	-	-	-	-	-	19	0	0	76	22	28.94736842	0	0	NA	0	0	NA	1.34E-32	3.641171102	2	1	0.358828898	2	2	0.641171102	unphased	1.790865319	0.89543266	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214007123	1	111507937	C	A	C1orf103	CCDS30800.1	r.?	-	-	upstream	29	0	0	98	14	14.28571429	0	0	NA	0	0	NA	1.34E-16	3.641171102	2	1	0.358828898	2	2	0.641171102	unphased	0.883803664	0.883803664	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214007662	1	117465609	G	A	PTGFRN	CCDS890.1	r.?	-	-	intronic	18	0	0	78	19	24.35897436	0	0	NA	0	0	NA	9.67E-27	3.641171102	2	1	0.358828898	2	2	0.641171102	unphased	1.506998555	1.109042174	1.358828898	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214007722	1	118331909	C	A	-	-	-	-	-	-	25	0	0	88	19	21.59090909	0	0	NA	0	0	NA	1.22E-25	3.641171102	2	1	0.358828898	2	2	0.641171102	unphased	1.335748719	1.335748719	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214007752	1	118796948	G	A	-	-	-	-	-	-	37	0	0	76	31	40.78947368	0	0	NA	0	0	NA	7.17E-51	3.641171102	2	1	0.358828898	2	2	0.641171102	unphased	2.523492041	1.26174602	2	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214010595	1	143155591	T	A	-	-	-	-	-	-	22	0	0	56	8	14.28571429	0	0	NA	0	0	NA	4.48E-10	3.641171102	2	1	0.358828898	2	2	0.641171102	unphased	0.883803664	0.883803664	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214012706	1	145792826	G	A	GPR89A	CCDS41377.1	r.?	-	-	intronic	17	0	0	44	7	15.90909091	0	0	NA	0	0	NA	2.55E-09	3	2	1	1	NA	NA	NA	unphased	0.882231405	0.882231405	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214014111	1	150135061	G	A	PLEKHO1	CCDS945.1	r.?	-	-	downstream	26	0	0	77	9	11.68831169	0	0	NA	0	0	NA	2.32E-10	4	3	1	1	NA	NA	NA	unphased	0.765053129	0.765053129	1	0.00375	0.99625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214014376	1	152224176	C	A	-	-	-	-	-	-	35	0	0	93	36	38.70967742	0	0	NA	0	0	NA	8.46E-58	4	3	1	1	NA	NA	NA	unphased	2.53372434	0.84457478	3	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214014482	1	153698421	C	A	INTS3	CCDS1052.1	r.?	-	-	upstream	24	0	0	81	12	14.81481481	0	0	NA	0	0	NA	1.26E-14	4	3	1	1	NA	NA	NA	unphased	0.96969697	0.96969697	1	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214014597	1	154526582	C	A	UBE2Q1	CCDS1069.1	r.?	-	-	intronic	20	0	0	70	11	15.71428571	0	0	NA	0	0	NA	8.06E-14	4	3	1	1	NA	NA	NA	unphased	1.028571429	1.028571429	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214014957	1	158254946	G	A	CD1C	CCDS1175.1	r.?	-	-	upstream	30	0	0	71	10	14.08450704	0	0	NA	0	0	NA	3.42E-12	4	3	1	1	NA	NA	NA	unphased	0.921895006	0.921895006	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214015153	1	160493899	G	A	SLAMF6	CCDS1205.1	r.?	-	-	upstream	26	0	0	85	43	50.58823529	0	0	NA	0	0	NA	3.07E-75	4	3	1	1	NA	NA	NA	unphased	3.311229947	1.103743316	3	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214015387	1	162542322	G	A	UAP1	CCDS1240.1	r.?	-	-	intronic	51	0	0	78	9	11.53846154	0	0	NA	0	0	NA	2.61E-10	4	3	1	1	NA	NA	NA	unphased	0.755244755	0.755244755	1	0.005	0.99375	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214015395	1	162612424	G	A	DDR2	CCDS1241.1	r.?	-	-	intronic	27	0	0	80	20	25	0	0	NA	0	0	NA	2.53E-28	4	3	1	1	NA	NA	NA	unphased	1.636363636	0.818181818	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214015591	1	164750165	G	A	PBX1	CCDS1246.1	r.?	-	-	intronic	35	0	0	73	16	21.91780822	0	0	NA	0	0	NA	6.15E-22	4	3	1	1	NA	NA	NA	unphased	1.434620174	1.434620174	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214015825	1	167564653	C	A	-	-	-	-	-	-	23	0	0	78	9	11.53846154	0	0	NA	0	0	NA	2.61E-10	4	3	1	1	NA	NA	NA	unphased	0.755244755	0.755244755	1	0.005	0.995	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214016538	1	176099857	T	A	RFWD2	CCDS30944.1	r.?	-	-	intronic	25	0	0	64	33	51.5625	0	0	NA	0	0	NA	1.78E-58	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	3.115417147	1.247880654	2.496566588	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214016633	1	177716202	G	A	-	-	-	-	-	-	32	0	0	61	12	19.67213115	0	0	NA	0	0	NA	3.39E-16	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	1.188594321	1.188594321	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214017499	1	187728491	G	A	-	-	-	-	-	-	37	0	0	80	14	17.5	0	0	NA	0	0	NA	6.76E-18	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	1.057353698	1.057353698	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214017598	1	188799745	C	A	-	-	-	-	-	-	21	0	0	64	8	12.5	0	0	NA	0	0	NA	1.35E-09	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	0.755252642	0.755252642	1	0.00625	0.99375	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214017633	1	189576800	G	A	-	-	-	-	-	-	45	0	0	72	9	12.5	0	0	NA	0	0	NA	1.25E-10	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	0.755252642	0.755252642	1	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214017672	1	190181856	G	A	FAM5C	CCDS1373.1	r.?	-	-	intronic	33	0	0	61	33	54.09836066	0	0	NA	0	0	NA	1.95E-59	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	3.268634384	1.309251834	2.496566588	0	0.99625	0.00375	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214017717	1	190640493	G	A	-	-	-	-	-	-	27	0	0	73	14	19.17808219	0	0	NA	2	0	0	1.71E-18	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	1.158743779	1.158743779	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214017798	1	191869823	T	A	-	-	-	-	-	-	23	0	0	59	6	10.16949153	0	0	NA	0	0	NA	5.61E-07	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	0.614442827	1.237382543	0.496566588	0.00125	0.99625	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214017838	1	192634554	T	A	-	-	-	-	-	-	43	0	0	77	28	36.36363636	0	0	NA	0	0	NA	2.30E-44	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	2.197098594	1.098549297	2	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214017872	1	193119047	G	A	CDC73	CCDS1382.1	r.?	-	-	intronic	39	0	0	68	29	42.64705882	0	0	NA	0	0	NA	2.12E-48	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	2.576744307	1.032115194	2.496566588	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214017921	1	193756494	C	A	-	-	-	-	-	-	31	0	0	67	28	41.79104478	0	0	NA	0	0	NA	1.81E-46	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	2.525023757	1.011398522	2.496566588	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214017957	1	194030897	G	A	-	-	-	-	-	-	28	0	0	59	5	8.474576271	0	0	NA	0	0	NA	1.25E-05	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	0.512035689	1.031152119	0.496566588	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214018035	1	195136388	C	A	-	-	-	-	-	-	42	0	0	75	11	14.66666667	0	0	NA	0	0	NA	1.78E-13	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	0.8861631	0.8861631	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214018069	1	195887372	C	A	-	-	-	-	-	-	34	0	0	70	30	42.85714286	0	0	NA	0	0	NA	4.25E-50	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	2.589437628	1.037199505	2.496566588	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214018405	1	199835563	T	A	-	-	-	-	-	-	33	0	0	61	10	16.39344262	0	0	NA	0	0	NA	6.98E-13	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	0.990495268	0.990495268	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214018751	1	203273181	C	A	BTG2	CCDS1437.1	r.?	-	-	upstream	20	0	0	71	26	36.61971831	332	0	0	263	108	41.06463878	2.11E-41	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	2.212571119	1.10628556	2	0	1	0	2	1	1.55E-173	1	YES	1_1	somatic	custom.pulldown.HiSeq
1352322	PD9768b	1214019116	1	207451885	C	A	-	-	-	-	-	-	25	0	0	62	11	17.74193548	0	0	NA	0	0	NA	1.96E-14	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	1.071971491	1.071971491	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214019214	1	208763681	T	A	-	-	-	-	-	-	27	0	0	73	8	10.95890411	0	0	NA	0	0	NA	3.93E-09	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	0.662139302	1.333435069	0.496566588	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214019220	1	208821503	G	A	-	-	-	-	-	-	26	0	0	64	11	17.1875	2	0	0	0	0	NA	2.85E-14	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	1.038472382	1.038472382	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214019474	1	211796716	T	A	-	-	-	-	-	-	33	0	0	64	8	12.5	246	0	0	223	34	15.24663677	1.35E-09	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	0.755252642	0.755252642	1	0.0025	0.9975	0	2	1	3.85E-39	1	YES	1_1	somatic	custom.pulldown.HiSeq
1352322	PD9768b	1214019696	1	213939374	G	A	-	-	-	-	-	-	24	0	0	60	19	31.66666667	0	0	NA	0	0	NA	3.21E-29	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	1.913306692	0.956653346	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214019705	1	213987170	C	A	-	-	-	-	-	-	25	0	0	60	10	16.66666667	0	0	NA	0	0	NA	5.86E-13	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	1.007003522	1.007003522	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214019861	1	215581531	G	A	-	-	-	-	-	-	31	0	0	73	9	12.32876712	0	0	NA	0	0	NA	1.42E-10	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	0.744906715	0.744906715	1	0.00625	0.99375	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214020040	1	218371911	G	A	-	-	-	-	-	-	38	0	0	69	9	13.04347826	0	0	NA	0	0	NA	8.45E-11	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	0.788089713	0.788089713	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214020060	1	218594338	G	A	TGFB2	CCDS44318.1	r.?	-	-	intronic	29	0	0	73	14	19.17808219	0	0	NA	0	0	NA	1.71E-18	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	1.158743779	1.158743779	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214020468	1	223296809	G	A	TLR5	CCDS31033.1	r.?	-	-	intronic	29	0	0	72	8	11.11111111	0	0	NA	0	0	NA	3.52E-09	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	0.671335681	0.671335681	1	0.00875	0.99125	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214020969	1	228067136	G	A	-	-	-	-	-	-	28	0	0	61	14	22.95081967	0	0	NA	0	0	NA	1.10E-19	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	1.386693375	1.386693375	1	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214020974	1	228212915	G	A	WNT3A	CCDS1564.1	r.?	-	-	intronic	40	0	0	100	13	13	0	0	NA	0	0	NA	5.79E-15	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	0.785462747	0.785462747	1	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214021440	1	233885659	G	A	-	-	-	-	-	-	35	0	0	69	27	39.13043478	0	0	NA	0	0	NA	6.80E-44	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	2.364269139	0.947008244	2.496566588	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214021617	1	235399310	G	A	ARID4B	CCDS31061.1	r.?	-	-	intronic	26	0	0	68	9	13.23529412	0	0	NA	0	0	NA	7.38E-11	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	0.799679268	0.799679268	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214021870	1	237512741	C	A	RYR2	ENST00000366574	r.?	-	-	intronic	27	0	0	79	39	49.36708861	0	0	NA	0	0	NA	8.04E-68	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	2.982769926	1.194748797	2.496566588	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214022173	1	240746986	C	A	GREM2	CCDS31070.1	r.?	-	-	intronic	20	0	0	63	12	19.04761905	0	0	NA	0	0	NA	5.15E-16	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	1.150861168	1.150861168	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214022244	1	241665122	C	A	FH	CCDS1617.1	r.?	-	-	intronic	43	0	0	63	22	34.92063492	0	0	NA	0	0	NA	1.03E-34	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	2.109912142	1.054956071	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214022840	1	247442369	G	A	-	-	-	-	-	-	22	0	0	78	31	39.74358974	0	0	NA	0	0	NA	1.97E-50	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	2.401316091	0.961847404	2.496566588	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214022895	1	248012680	G	A	-	-	-	-	-	-	16	0	0	56	19	33.92857143	0	0	NA	0	0	NA	6.79E-30	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	2.049971456	1.024985728	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214022975	1	248657379	C	A	OR2T5	CCDS31118.1	r.?	-	-	downstream	32	0	0	76	13	17.10526316	0	0	NA	0	0	NA	1.39E-16	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	1.033503615	1.033503615	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214023023	1	249063405	G	A	-	-	-	-	-	-	29	0	0	73	26	35.61643836	0	0	NA	0	0	NA	5.09E-41	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	2.151952732	1.075976366	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214023251	10	526627	G	A	DIP2C	CCDS7054.1	r.?	-	-	intronic	7	0	0	177	9	5.084745763	0	0	NA	0	0	NA	3.51E-07	17.72953575	16	1	0.270464248	16	2	0.729535752	unphased	1.03093171	1.03093171	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214023599	10	1272802	G	A	ADARB2	CCDS7058.1	r.?	-	-	intronic	13	0	0	135	9	6.666666667	0	0	NA	0	0	NA	3.46E-08	17.72953575	16	1	0.270464248	16	2	0.729535752	unphased	1.35166602	1.35166602	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214023649	10	1315388	G	A	ADARB2	CCDS7058.1	r.?	-	-	intronic	10	1	10	54	11	20.37037037	0	0	NA	0	0	NA	3.84E-15	17.72953575	16	1	0.270464248	16	2	0.729535752	unphased	4.130090616	1.032522654	4	0.00125	0.99875	0	2	0.04888987	1	1	NA	NA	NA	NA
1352322	PD9768b	1214023793	10	1624416	C	A	ADARB2	CCDS7058.1	r.?	-	-	intronic	14	0	0	123	12	9.756097561	0	0	NA	0	0	NA	2.10E-12	17.72953575	16	1	0.270464248	16	2	0.729535752	unphased	1.978047834	0.989023917	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214023885	10	1807866	T	A	-	-	-	-	-	-	33	0	0	214	172	80.37383178	0	0	NA	0	0	NA	0	17.72953575	16	1	0.270464248	16	2	0.729535752	unphased	16.29578659	1.018486662	16	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214023979	10	1967603	G	A	-	-	-	-	-	-	41	0	0	227	11	4.845814978	0	0	NA	0	0	NA	2.93E-08	17.72953575	16	1	0.270464248	16	2	0.729535752	unphased	0.982488517	0.982488517	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214024453	10	3314704	C	A	-	-	-	-	-	-	28	0	0	156	7	4.487179487	0	0	NA	0	0	NA	1.59E-05	10.18708562	9	1	0.812914377	9	2	0.187085623	unphased	0.571331931	0.571331931	1	0.02	0.98	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214024599	10	3867927	C	A	-	-	-	-	-	-	14	0	0	163	36	22.08588957	0	0	NA	0	0	NA	1.40E-47	15	14	1	1	NA	NA	NA	unphased	3.875069716	0.968767429	4	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214024670	10	3984350	G	A	-	-	-	-	-	-	15	0	0	185	6	3.243243243	0	0	NA	0	0	NA	0.000373998	15	14	1	1	NA	NA	NA	unphased	0.569041769	0.569041769	1	0.025	0.975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214024989	10	5050268	G	A	AKR1C2	CCDS7062.1	r.?	-	-	upstream	27	0	0	51	13	25.49019608	0	0	NA	0	0	NA	4.87E-19	5.31519888	4	1	0.68480112	4	2	0.31519888	unphased	2.003695971	1.001847986	2	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214025421	10	7589186	G	A	-	-	-	-	-	-	19	0	0	90	15	16.66666667	0	0	NA	0	0	NA	9.83E-19	5.31519888	4	1	0.68480112	4	2	0.31519888	unphased	1.310108904	1.310108904	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214025497	10	7959976	G	A	TAF3	CCDS41487.1	r.?	-	-	intronic	35	0	0	123	14	11.38211382	0	0	NA	0	0	NA	3.54E-15	5.31519888	4	1	0.68480112	4	2	0.31519888	unphased	0.89470852	0.89470852	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214025891	10	10210397	C	A	-	-	-	-	-	-	39	0	0	167	29	17.36526946	0	0	NA	0	0	NA	2.35E-35	10	9	1	1	NA	NA	NA	unphased	2.178551987	1.089275993	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214025967	10	10912916	C	A	-	-	-	-	-	-	11	0	0	83	46	55.42168675	0	0	NA	0	0	NA	6.17E-83	5.264024235	4	1	0.735975765	4	2	0.264024235	unphased	4.328144867	1.082036217	4	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214026034	10	11484096	G	A	-	-	-	-	-	-	32	0	0	74	18	24.32432432	0	0	NA	0	0	NA	2.13E-25	5.264024235	4	1	0.735975765	4	2	0.264024235	unphased	1.899602947	0.949801473	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214026073	10	11737479	G	A	-	-	-	-	-	-	34	0	0	97	20	20.6185567	0	0	NA	0	0	NA	1.80E-26	5.264024235	4	1	0.735975765	4	2	0.264024235	unphased	1.61020181	0.927548554	1.735975765	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214026444	10	13832966	G	A	FRMD4A	CCDS7101.1	r.?	-	-	intronic	20	0	0	74	6	8.108108108	0	0	NA	0	0	NA	2.16E-06	5.264024235	4	1	0.735975765	4	2	0.264024235	unphased	0.633200982	0.633200982	1	0.01625	0.98375	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214026755	10	15820667	G	A	FAM188A	CCDS7110.1	r.1883c>u	c.?	p.?	3'UTR variant	39	0	0	91	11	12.08791209	0	0	NA	0	0	NA	1.60E-12	4.370996424	3	1	0.629003576	4	1	0.370996424	unphased	0.836054513	0.836054513	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214026802	10	16327449	C	A	-	-	-	-	-	-	28	0	0	72	35	48.61111111	0	0	NA	0	0	NA	1.05E-60	4.370996424	3	1	0.629003576	4	1	0.370996424	unphased	3.362163666	0.997379778	3.370996424	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214026873	10	16777182	G	A	RSU1	CCDS7112.1	r.?	-	-	intronic	29	0	0	116	20	17.24137931	83	0	0	178	37	20.78651685	8.48E-25	4.370996424	3	1	0.629003576	4	1	0.370996424	unphased	1.192491547	1.192491547	1	0	0.99875	0.00125	2	1	8.73E-48	1	YES	1_1	somatic	custom.pulldown.HiSeq
1352322	PD9768b	1214026920	10	17128636	T	A	CUBN	CCDS7113.1	r.?	-	-	intronic	44	0	0	65	15	23.07692308	0	0	NA	0	0	NA	5.00E-21	4.370996424	3	1	0.629003576	4	1	0.370996424	unphased	1.59610407	1.16419273	1.370996424	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214027039	10	18720755	G	A	CACNB2	CCDS7128.1	r.?	-	-	intronic	35	0	0	84	31	36.9047619	0	0	NA	0	0	NA	3.39E-49	3.34128339	2	1	0.65871661	2	2	0.34128339	unphased	2.172486619	1.086243309	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214027180	10	19839519	G	A	C10orf112	ENST00000377266	r.?	-	-	intronic	24	0	0	52	6	11.53846154	0	0	NA	0	0	NA	2.61E-07	2.686348135	1	1	0.313651865	2	1	0.686348135	unphased	0.60366954	0.879538399	0.686348135	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214027226	10	20381828	G	A	PLXDC2	CCDS7132.1	r.?	-	-	intronic	35	0	0	56	21	37.5	0	0	NA	0	0	NA	5.43E-34	2.686348135	1	1	0.313651865	2	1	0.686348135	unphased	1.961926005	1.163416951	1.686348135	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214027280	10	21248257	G	A	NEBL	CCDS7133.1	r.?	-	-	intronic	30	0	0	143	12	8.391608392	0	0	NA	0	0	NA	1.27E-11	6	5	1	1	NA	NA	NA	unphased	0.717101081	0.717101081	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214027464	10	23240158	G	A	ARMC3	CCDS7142.1	r.?	-	-	intronic	23	0	0	64	16	25	0	0	NA	0	0	NA	5.94E-23	3.282348422	2	1	0.717651578	2	2	0.282348422	unphased	1.456950742	1.456950742	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214027665	10	25597411	T	A	GPR158	CCDS31166.1	r.?	-	-	intronic	37	0	0	77	20	25.97402597	0	0	NA	0	0	NA	1.07E-28	3.282348422	2	1	0.717651578	2	2	0.282348422	unphased	1.513715057	0.881270146	1.717651578	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214027993	10	28571337	G	A	MPP7	CCDS7158.1	r.?	-	-	upstream	30	0	0	64	21	32.8125	0	0	NA	0	0	NA	1.60E-32	3.282348422	2	1	0.717651578	2	2	0.282348422	unphased	1.912247849	0.956123924	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214028243	10	31522575	G	A	-	-	-	-	-	-	21	0	0	60	13	21.66666667	1	0	0	0	0	NA	5.07E-18	3.282348422	2	1	0.717651578	2	2	0.282348422	unphased	1.262690643	1.262690643	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214028244	10	31525717	G	A	-	-	-	-	-	-	23	0	0	65	16	24.61538462	0	0	NA	0	0	NA	7.85E-23	3.282348422	2	1	0.717651578	2	2	0.282348422	unphased	1.434536115	1.434536115	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214028248	10	31570571	G	A	-	-	-	-	-	-	24	0	0	73	13	17.80821918	0	0	NA	0	0	NA	7.97E-17	3.282348422	2	1	0.717651578	2	2	0.282348422	unphased	1.037827926	1.037827926	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214028258	10	31686334	C	A	ZEB1	CCDS44370.1	r.?	-	-	intronic	29	0	0	65	6	9.230769231	0	0	NA	0	0	NA	1.00E-06	3.282348422	2	1	0.717651578	2	2	0.282348422	unphased	0.537951043	0.537951043	1	0.035	0.965	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214028627	10	36977151	G	A	-	-	-	-	-	-	23	0	0	63	19	30.15873016	0	0	NA	0	0	NA	9.48E-29	3.282348422	2	1	0.717651578	2	2	0.282348422	unphased	1.757591371	1.023252558	1.717651578	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214031246	10	44270905	G	A	-	-	-	-	-	-	17	0	0	73	25	34.24657534	0	0	NA	0	0	NA	5.49E-39	2.384744114	1	1	0.615255886	2	1	0.384744114	unphased	1.688424199	1.219304116	1.384744114	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214031298	10	44960604	G	A	-	-	-	-	-	-	24	0	0	50	10	20	0	0	NA	0	0	NA	8.36E-14	2.384744114	1	1	0.615255886	2	1	0.384744114	unphased	0.986039732	0.986039732	1	0.00125	0.9975	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214031353	10	46061486	G	A	Mar-08	CCDS7213.1	r.?	-	-	intronic	28	0	0	64	17	26.5625	0	0	NA	0	0	NA	8.43E-25	2.384744114	1	1	0.615255886	2	1	0.384744114	unphased	1.309584019	1.309584019	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214031536	10	49742045	C	A	ARHGAP22	CCDS7227.1	r.?	-	-	intronic	15	0	0	56	8	14.28571429	0	0	NA	0	0	NA	4.48E-10	2.384744114	1	1	0.615255886	2	1	0.384744114	unphased	0.704314094	0.704314094	1	0.0075	0.99125	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214031584	10	50687861	G	A	ERCC6	CCDS7229.1	r.?	-	-	intronic	13	0	0	70	16	22.85714286	0	0	NA	0	0	NA	2.93E-22	2.384744114	1	1	0.615255886	2	1	0.384744114	unphased	1.126902551	1.126902551	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214031595	10	50923662	C	A	-	-	-	-	-	-	8	0	0	76	14	18.42105263	0	0	NA	0	0	NA	3.14E-18	2.384744114	1	1	0.615255886	2	1	0.384744114	unphased	0.90819449	0.90819449	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214031702	10	52994804	T	A	PRKG1	CCDS7244.1	r.?	-	-	intronic	26	0	0	76	16	21.05263158	0	0	NA	0	0	NA	1.25E-21	2.384744114	1	1	0.615255886	2	1	0.384744114	unphased	1.03793656	1.03793656	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214031767	10	54083421	T	A	-	-	-	-	-	-	46	0	0	58	11	18.96551724	0	0	NA	0	0	NA	8.96E-15	2.384744114	1	1	0.615255886	2	1	0.384744114	unphased	0.935037677	0.935037677	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214031815	10	54921690	C	A	-	-	-	-	-	-	39	0	0	52	12	23.07692308	0	0	NA	0	0	NA	4.19E-17	2.384744114	1	1	0.615255886	2	1	0.384744114	unphased	1.137738152	1.137738152	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214031884	10	56125787	T	A	PCDH15	CCDS44404.1	r.?	-	-	intronic	29	0	0	73	23	31.50684932	0	0	NA	0	0	NA	5.33E-35	2	1	1	1	NA	NA	NA	unphased	1.432129514	1.432129514	1	0	0.995	0.005	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214031902	10	56390813	T	A	PCDH15	CCDS44404.1	r.?	-	-	intronic	35	0	0	59	19	32.20338983	0	0	NA	0	0	NA	2.20E-29	2	1	1	1	NA	NA	NA	unphased	1.463790447	1.463790447	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214032051	10	58012986	T	A	-	-	-	-	-	-	35	0	0	64	8	12.5	0	0	NA	0	0	NA	1.35E-09	2	1	1	1	NA	NA	NA	unphased	0.568181818	0.568181818	1	0.0225	0.9775	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214032057	10	58287570	G	A	-	-	-	-	-	-	25	0	0	64	9	14.0625	0	0	NA	0	0	NA	4.20E-11	2	1	1	1	NA	NA	NA	unphased	0.639204545	0.639204545	1	0.02125	0.97875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214032162	10	59705789	G	A	-	-	-	-	-	-	32	0	0	69	24	34.7826087	0	0	NA	0	0	NA	1.11E-37	2	1	1	1	NA	NA	NA	unphased	1.581027668	1.581027668	1	0	0.98875	0.01125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214032237	10	60659536	G	A	-	-	-	-	-	-	29	0	0	74	10	13.51351351	0	0	NA	0	0	NA	5.24E-12	2	1	1	1	NA	NA	NA	unphased	0.614250614	0.614250614	1	0.0225	0.9775	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214032263	10	61230212	G	A	-	-	-	-	-	-	8	0	0	54	8	14.81481481	0	0	NA	0	0	NA	3.31E-10	2	1	1	1	NA	NA	NA	unphased	0.673400673	0.673400673	1	0.0075	0.9925	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214032322	10	61670605	G	A	CCDC6	CCDS7257.1	r.?	-	-	upstream	25	0	0	57	7	12.28070175	0	0	NA	0	0	NA	1.66E-08	2	1	1	1	NA	NA	NA	unphased	0.558213716	0.558213716	1	0.02125	0.97875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214032409	10	63245280	G	A	-	-	-	-	-	-	35	0	0	68	18	26.47058824	0	0	NA	0	0	NA	3.83E-26	2	1	1	1	NA	NA	NA	unphased	1.203208556	1.203208556	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214032956	10	70434160	T	A	TET1	CCDS7281.1	r.?	-	-	intronic	24	0	0	66	19	28.78787879	0	0	NA	0	0	NA	2.64E-28	4	2	2	1	NA	NA	NA	unphased	1.884297521	0.94214876	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214033581	10	78429394	G	A	-	-	-	-	-	-	30	0	0	67	22	32.8358209	0	0	NA	0	0	NA	5.21E-34	4	2	2	1	NA	NA	NA	unphased	2.149253731	1.074626866	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214033585	10	78556077	G	A	-	-	-	-	-	-	26	0	0	82	27	32.92682927	0	0	NA	0	0	NA	1.96E-41	4	2	2	1	NA	NA	NA	unphased	2.155210643	1.077605322	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214034036	10	86112078	T	A	FAM190B	CCDS31235.1	r.?	-	-	intronic	11	0	0	68	5	7.352941176	0	0	NA	0	0	NA	2.51E-05	4	2	2	1	NA	NA	NA	unphased	0.481283422	0.481283422	1	0.05875	0.94125	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214034065	10	86471750	T	A	-	-	-	-	-	-	42	0	0	76	17	22.36842105	0	0	NA	0	0	NA	2.21E-23	4	2	2	1	NA	NA	NA	unphased	1.464114833	1.464114833	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214034096	10	87141941	G	A	-	-	-	-	-	-	26	0	0	56	11	19.64285714	0	0	NA	0	0	NA	5.91E-15	4	2	2	1	NA	NA	NA	unphased	1.285714286	1.285714286	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214034139	10	88089464	C	A	GRID1	CCDS31236.1	r.?	-	-	intronic	7	0	0	51	14	27.45098039	2	0	0	0	0	NA	6.64E-21	4	2	2	1	NA	NA	NA	unphased	1.796791444	0.898395722	2	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214034237	10	89400986	C	A	-	-	-	-	-	-	35	0	0	50	17	34	0	0	NA	0	0	NA	6.43E-27	4	2	2	1	NA	NA	NA	unphased	2.225454545	1.112727273	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214034626	10	95302955	G	A	-	-	-	-	-	-	20	0	0	60	18	30	0	0	NA	0	0	NA	2.89E-27	4	2	2	1	NA	NA	NA	unphased	1.963636364	0.981818182	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214034723	10	96915198	G	A	-	-	-	-	-	-	32	0	0	61	15	24.59016393	0	0	NA	0	0	NA	1.73E-21	4	2	2	1	NA	NA	NA	unphased	1.609538003	0.804769001	2	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214034724	10	96917671	G	A	-	-	-	-	-	-	35	0	0	60	16	26.66666667	0	0	NA	0	0	NA	1.86E-23	4	2	2	1	NA	NA	NA	unphased	1.745454545	0.872727273	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214034737	10	97123930	G	A	SORBS1	CCDS31255.1	r.?	-	-	intronic	25	0	0	71	11	15.49295775	0	0	NA	0	0	NA	9.49E-14	4	2	2	1	NA	NA	NA	unphased	1.014084507	1.014084507	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214034861	10	99174321	C	A	-	-	-	-	-	-	17	0	0	59	13	22.03389831	0	0	NA	0	0	NA	3.99E-18	4	2	2	1	NA	NA	NA	unphased	1.442218798	1.442218798	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214035005	10	101328902	G	A	-	-	-	-	-	-	21	0	0	43	7	16.27906977	0	0	NA	0	0	NA	2.15E-09	4	2	2	1	NA	NA	NA	unphased	1.065539112	1.065539112	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214035188	10	103924323	C	A	NOLC1	CCDS7530.1	r.?	-	-	downstream	38	0	0	75	16	21.33333333	0	0	NA	0	0	NA	9.88E-22	4	2	2	1	NA	NA	NA	unphased	1.396363636	1.396363636	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214035393	10	106897382	G	A	SORCS3	CCDS7558.1	r.?	-	-	intronic	42	0	0	54	19	35.18518519	0	0	NA	0	0	NA	2.97E-30	4	2	2	1	NA	NA	NA	unphased	2.303030303	1.151515152	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214035487	10	108139268	G	A	-	-	-	-	-	-	31	0	0	80	19	23.75	0	0	NA	0	0	NA	1.65E-26	4	2	2	1	NA	NA	NA	unphased	1.554545455	0.777272727	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214035827	10	113222341	C	A	-	-	-	-	-	-	28	0	0	66	18	27.27272727	0	0	NA	0	0	NA	2.08E-26	4	2	2	1	NA	NA	NA	unphased	1.785123967	0.892561983	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214035885	10	114087235	C	A	-	-	-	-	-	-	14	0	0	46	15	32.60869565	0	0	NA	0	0	NA	1.35E-23	4	2	2	1	NA	NA	NA	unphased	2.134387352	1.067193676	2	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214035896	10	114214290	G	A	VTI1A	CCDS7575.2	r.?	-	-	intronic	27	0	0	71	19	26.76056338	0	0	NA	0	0	NA	1.29E-27	4	2	2	1	NA	NA	NA	unphased	1.751600512	0.875800256	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214035989	10	115263961	G	A	-	-	-	-	-	-	22	0	0	54	8	14.81481481	0	0	NA	0	0	NA	3.31E-10	4	2	2	1	NA	NA	NA	unphased	0.96969697	0.96969697	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214036261	10	118010916	G	A	GFRA1	CCDS44481.1	r.?	-	-	intronic	31	0	0	58	16	27.5862069	0	0	NA	0	0	NA	1.00E-23	4	2	2	1	NA	NA	NA	unphased	1.805642633	0.902821317	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214036354	10	119325509	G	A	-	-	-	-	-	-	36	0	0	67	16	23.88059701	0	0	NA	0	0	NA	1.35E-22	4	2	2	1	NA	NA	NA	unphased	1.563093623	0.781546811	2	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214036415	10	120334905	G	A	-	-	-	-	-	-	33	0	0	64	12	18.75	0	0	NA	0	0	NA	6.30E-16	4	2	2	1	NA	NA	NA	unphased	1.227272727	1.227272727	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214036612	10	122337479	G	A	PPAPDC1A	CCDS41573.1	r.?	-	-	intronic	42	0	0	71	22	30.98591549	0	0	NA	0	0	NA	2.34E-33	4	2	2	1	NA	NA	NA	unphased	2.028169014	1.014084507	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214036618	10	122416511	C	A	-	-	-	-	-	-	38	0	0	77	18	23.37662338	101	0	0	133	44	33.08270677	4.71E-25	4	2	2	1	NA	NA	NA	unphased	1.530106257	0.765053129	2	0	1	0	2	1	1.25E-66	1	YES	1_1	somatic	custom.pulldown.HiSeq
1352322	PD9768b	1214036720	10	123658853	G	A	ATE1	CCDS31299.1	r.?	-	-	intronic	36	0	0	69	8	11.5942029	0	0	NA	0	0	NA	2.49E-09	4	2	2	1	NA	NA	NA	unphased	0.758893281	0.758893281	1	0.00375	0.99625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214037140	10	127783435	G	A	ADAM12	CCDS7653.1	r.?	-	-	intronic	32	0	0	58	10	17.24137931	0	0	NA	0	0	NA	4.10E-13	4	2	2	1	NA	NA	NA	unphased	1.128526646	1.128526646	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214037162	10	128081838	G	A	ADAM12	CCDS7653.1	r.?	-	-	upstream	23	0	0	63	17	26.98412698	0	0	NA	0	0	NA	6.22E-25	4	2	2	1	NA	NA	NA	unphased	1.766233766	0.883116883	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214037883	11	590387	G	A	PHRF1	CCDS44507.1	r.?	-	-	intronic	15	0	0	61	13	21.31147541	0	0	NA	0	0	NA	6.41E-18	3	2	1	1	NA	NA	NA	unphased	1.181818182	1.181818182	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214038053	11	3441634	G	A	ENSG00000182139	ENST00000328202	r.?	-	-	downstream	29	0	0	58	24	41.37931034	0	0	NA	0	0	NA	6.49E-40	3	2	1	1	NA	NA	NA	unphased	2.294670846	1.147335423	2	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214038586	11	10672654	C	A	MRVI1	CCDS44539.1	r.?	-	-	intronic	33	0	0	76	16	21.05263158	0	0	NA	0	0	NA	1.25E-21	3	2	1	1	NA	NA	NA	unphased	1.167464115	1.167464115	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214038784	11	13603752	G	A	-	-	-	-	-	-	23	0	0	64	7	10.9375	0	0	NA	0	0	NA	3.78E-08	3	2	1	1	NA	NA	NA	unphased	0.606534091	0.606534091	1	0.015	0.98375	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214039028	11	18124521	G	A	SAAL1	CCDS31439.1	r.?	-	-	intronic	31	0	0	72	13	18.05555556	0	0	NA	0	0	NA	6.58E-17	3	2	1	1	NA	NA	NA	unphased	1.001262626	1.001262626	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214039178	11	20196418	C	A	-	-	-	-	-	-	33	0	0	66	9	13.63636364	0	0	NA	0	0	NA	5.59E-11	3	2	1	1	NA	NA	NA	unphased	0.756198347	0.756198347	1	0.005	0.995	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214039461	11	24279554	T	A	-	-	-	-	-	-	37	0	0	68	14	20.58823529	0	0	NA	0	0	NA	5.84E-19	3	2	1	1	NA	NA	NA	unphased	1.14171123	1.14171123	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214039462	11	24279557	G	A	-	-	-	-	-	-	38	0	0	66	13	19.6969697	0	0	NA	0	0	NA	1.95E-17	3	2	1	1	NA	NA	NA	unphased	1.092286501	1.092286501	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214039564	11	25470324	T	A	-	-	-	-	-	-	36	0	0	51	7	13.7254902	0	0	NA	0	0	NA	7.46E-09	3	2	1	1	NA	NA	NA	unphased	0.76114082	0.76114082	1	0.00375	0.99625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214039622	11	26368922	G	A	ANO3	CCDS31447.1	r.?	-	-	intronic	25	0	0	65	7	10.76923077	0	0	NA	0	0	NA	4.22E-08	3	2	1	1	NA	NA	NA	unphased	0.597202797	0.597202797	1	0.01625	0.98375	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214039801	11	29375131	G	A	-	-	-	-	-	-	38	0	0	67	8	11.94029851	0	0	NA	0	0	NA	1.96E-09	3	2	1	1	NA	NA	NA	unphased	0.662143826	0.662143826	1	0.0075	0.9925	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214039964	11	32393576	C	A	-	-	-	-	-	-	38	0	0	70	12	17.14285714	0	0	NA	0	0	NA	1.99E-15	3	2	1	1	NA	NA	NA	unphased	0.950649351	0.950649351	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214040100	11	33894547	G	A	LMO2	CCDS7888.2	r.?	-	-	intronic	13	0	0	83	35	42.1686747	0	0	NA	2	2	100	7.09E-58	4	3	1	1	NA	NA	NA	unphased	2.760131435	0.920043812	3	0	1	0	2	1	2.50E-05	1	NA	NA	NA	NA
1352322	PD9768b	1214040104	11	33947726	G	A	-	-	-	-	-	-	15	0	0	62	39	62.90322581	0	0	NA	0	0	NA	9.70E-74	4	3	1	1	NA	NA	NA	unphased	4.117302053	1.372434018	3	0	0.9825	0.0175	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214040182	11	34997522	G	A	PDHX	CCDS7896.1	r.?	-	-	intronic	22	0	0	63	25	39.68253968	0	0	NA	0	0	NA	6.06E-41	2.86642458	1	1	0.13357542	2	1	0.86642458	unphased	2.147571082	1.150633733	1.86642458	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214040190	11	35187062	G	A	CD44	CCDS7897.1	r.?	-	-	intronic	31	0	0	62	10	16.12903226	0	0	NA	0	0	NA	8.29E-13	2.86642458	1	1	0.13357542	2	1	0.86642458	unphased	0.87288373	1.007454947	0.86642458	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214040220	11	35649012	G	A	-	-	-	-	-	-	12	0	0	75	12	16	0	0	NA	0	0	NA	4.77E-15	2.86642458	1	1	0.13357542	2	1	0.86642458	unphased	0.86590066	0.999395308	0.86642458	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214040289	11	36595594	G	A	RAG1	CCDS7902.1	r.864g>a	c.740G>A	p.R247H	missense	35	0	0	80	13	16.25	214	1	0.46728972	180	23	12.77777778	2.82E-16	2.86642458	1	1	0.13357542	2	1	0.86642458	unphased	0.879430358	1.015010859	0.86642458	0	1	0	2	1	3.72E-25	0.657910866	YES	1_1	somatic	custom.pulldown.HiSeq
1352322	PD9768b	1214040324	11	37385283	G	A	-	-	-	-	-	-	42	0	0	68	21	30.88235294	0	0	NA	0	0	NA	7.15E-32	2.86642458	1	1	0.13357542	2	1	0.86642458	unphased	1.671315612	0.895463781	1.86642458	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214040450	11	39503938	T	A	-	-	-	-	-	-	30	0	0	62	16	25.80645161	0	0	NA	0	0	NA	3.36E-23	2.86642458	1	1	0.13357542	2	1	0.86642458	unphased	1.396613968	1.396613968	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214040474	11	39689287	T	A	-	-	-	-	-	-	21	0	0	68	13	19.11764706	0	0	NA	0	0	NA	2.96E-17	2.86642458	1	1	0.13357542	2	1	0.86642458	unphased	1.034623951	1.034623951	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214040562	11	40912088	G	A	-	-	-	-	-	-	38	0	0	64	15	23.4375	0	0	NA	0	0	NA	3.87E-21	2.86642458	1	1	0.13357542	2	1	0.86642458	unphased	1.26840917	1.26840917	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214040646	11	42270043	G	A	-	-	-	-	-	-	29	0	0	63	24	38.0952381	0	0	NA	0	0	NA	7.74E-39	2.86642458	1	1	0.13357542	2	1	0.86642458	unphased	2.061668238	1.104608383	1.86642458	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214040656	11	42344270	C	A	-	-	-	-	-	-	32	0	0	57	23	40.35087719	0	0	NA	0	0	NA	5.38E-38	2.86642458	1	1	0.13357542	2	1	0.86642458	unphased	2.1837407	1.170012827	1.86642458	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214040690	11	42834759	G	A	-	-	-	-	-	-	42	0	0	64	8	12.5	0	0	NA	0	0	NA	1.35E-09	2.86642458	1	1	0.13357542	2	1	0.86642458	unphased	0.676484891	0.780777584	0.86642458	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214041386	11	49229042	G	A	FOLH1	CCDS7946.1	r.?	-	-	intronic	31	0	0	71	14	19.71830986	0	0	NA	0	0	NA	1.13E-18	2.86642458	1	1	0.13357542	2	1	0.86642458	unphased	1.067131095	1.067131095	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214041429	11	49746801	C	A	ENSG00000205035	ENST00000357667	r.?	-	-	intronic	23	0	0	72	6	8.333333333	0	0	NA	0	0	NA	1.84E-06	2.86642458	1	1	0.13357542	2	1	0.86642458	unphased	0.450989927	0.520518389	0.86642458	0.045	0.955	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214042090	11	55717497	T	A	-	-	-	-	-	-	37	0	0	66	21	31.81818182	0	0	NA	0	0	NA	3.42E-32	2.86642458	1	1	0.13357542	2	1	0.86642458	unphased	1.72196154	0.922599047	1.86642458	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214042220	11	57614741	C	A	-	-	-	-	-	-	30	0	0	67	12	17.91044776	0	0	NA	0	0	NA	1.14E-15	2.86642458	1	1	0.13357542	2	1	0.86642458	unphased	0.969291784	0.969291784	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214042240	11	57921670	G	A	OR9Q1	CCDS31543.1	r.?	-	-	intronic	27	0	0	62	16	25.80645161	0	0	NA	0	0	NA	3.36E-23	2.86642458	1	1	0.13357542	2	1	0.86642458	unphased	1.396613968	1.396613968	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214042884	11	64722587	T	A	C11orf85	CCDS31603.1	r.?	-	-	intronic	37	0	0	66	33	50	0	0	NA	0	0	NA	7.16E-58	3.115135856	3	0	0.884864144	3	1	0.115135856	unphased	2.830295201	0.981084398	2.884864144	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214043018	11	66651670	G	A	PC	CCDS8152.1	r.?	-	-	intronic	10	0	0	55	16	29.09090909	0	0	NA	0	0	NA	3.78E-24	3.115135856	3	0	0.884864144	3	1	0.115135856	unphased	1.646717208	0.873652997	1.884864144	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214043606	11	73284717	C	A	FAM168A	CCDS41689.1	r.?	-	-	intronic	19	0	0	79	24	30.37974684	0	0	NA	0	0	NA	5.20E-36	3.115135856	3	0	0.884864144	3	1	0.115135856	unphased	1.719673033	0.912359142	1.884864144	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214043678	11	74084993	G	A	PGM2L1	CCDS8231.1	r.?	-	-	intronic	22	0	0	72	37	51.38888889	0	0	NA	0	0	NA	2.64E-65	3.115135856	3	0	0.884864144	3	1	0.115135856	unphased	2.908914512	1.008336742	2.884864144	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214044263	11	83519197	G	A	DLG2	CCDS41696.1	r.?	-	-	intronic	36	0	0	43	12	27.90697674	0	0	NA	0	0	NA	3.24E-18	1.579521336	1	0	0.420478664	2	0	0.579521336	unphased	1.15115606	1.15115606	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214044719	11	91331675	G	A	-	-	-	-	-	-	41	0	0	59	12	20.33898305	0	0	NA	0	0	NA	2.20E-16	2.61870717	2	0	0.38129283	3	0	0.61870717	unphased	1.050337976	1.050337976	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214044893	11	93953484	G	A	-	-	-	-	-	-	28	0	0	54	25	46.2962963	0	0	NA	0	0	NA	4.36E-43	2.61870717	2	0	0.38129283	3	0	0.61870717	unphased	2.390815609	0.912975546	2.61870717	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214045224	11	99166001	C	A	-	-	-	-	-	-	27	0	0	55	12	21.81818182	0	0	NA	0	0	NA	8.78E-17	2.61870717	2	0	0.38129283	3	0	0.61870717	unphased	1.126726192	1.126726192	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214045433	11	101815138	G	A	KIAA1377	CCDS31658.1	r.661g>a	c.391G>A	p.A131T	missense	41	0	0	72	39	54.16666667	155	0	0	161	71	44.09937888	5.35E-70	2.61870717	2	0	0.38129283	3	0	0.61870717	unphased	2.797254262	1.068181389	2.61870717	0	1	0	2	1	1.63E-117	1	YES	1_1	somatic	custom.pulldown.HiSeq
1352322	PD9768b	1214045697	11	104748485	T	A	-	-	-	-	-	-	31	0	0	64	6	9.375	0	0	NA	0	0	NA	9.14E-07	2.61870717	2	0	0.38129283	3	0	0.61870717	unphased	0.484140161	0.78250291	0.61870717	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214045750	11	105711214	G	A	GRIA4	CCDS41706.1	r.?	-	-	intronic	23	0	0	60	7	11.66666667	0	0	NA	0	0	NA	2.39E-08	2.61870717	2	0	0.38129283	3	0	0.61870717	unphased	0.602485533	0.973781399	0.61870717	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214045779	11	106151223	C	A	-	-	-	-	-	-	21	0	0	53	21	39.62264151	0	0	NA	0	0	NA	1.30E-34	2.61870717	2	0	0.38129283	3	0	0.61870717	unphased	2.046177283	1.023088642	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214046022	11	109706124	T	A	-	-	-	-	-	-	39	0	0	75	26	34.66666667	0	0	NA	0	0	NA	1.19E-40	2.61870717	2	0	0.38129283	3	0	0.61870717	unphased	1.790242728	0.895121364	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214046140	11	111273304	C	A	AP002451.1	CCDS3757.1	r.?	-	-	intronic	27	0	0	53	9	16.98113208	0	0	NA	0	0	NA	7.10E-12	2.61870717	2	0	0.38129283	3	0	0.61870717	unphased	0.876933121	0.876933121	1	0.00125	0.9975	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214046428	11	115875762	G	A	-	-	-	-	-	-	16	0	0	50	20	40	0	0	NA	0	0	NA	3.90E-33	2.61870717	2	0	0.38129283	3	0	0.61870717	unphased	2.065664686	1.032832343	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214046431	11	115922957	G	A	-	-	-	-	-	-	34	0	0	46	17	36.95652174	0	0	NA	0	0	NA	1.16E-27	2.61870717	2	0	0.38129283	3	0	0.61870717	unphased	1.908494547	0.954247273	2	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214046432	11	115922977	C	A	-	-	-	-	-	-	34	0	0	50	20	40	0	0	NA	0	0	NA	3.90E-33	2.61870717	2	0	0.38129283	3	0	0.61870717	unphased	2.065664686	1.032832343	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214046648	11	118455006	G	A	ARCN1	CCDS8400.1	r.?	-	-	intronic	24	0	0	84	11	13.0952381	0	0	NA	0	0	NA	6.49E-13	2.61870717	2	0	0.38129283	3	0	0.61870717	unphased	0.676259272	1.093019938	0.61870717	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214046656	11	118515045	G	A	PHLDB1	CCDS8401.1	r.?	-	-	intronic	12	0	0	68	12	17.64705882	0	0	NA	0	0	NA	1.37E-15	2.61870717	2	0	0.38129283	3	0	0.61870717	unphased	0.911322656	0.911322656	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214046952	11	122100817	G	A	-	-	-	-	-	-	12	0	0	53	31	58.49056604	0	0	NA	0	0	NA	1.94E-57	2.61870717	2	0	0.38129283	3	0	0.61870717	unphased	3.020547418	1.15344986	2.61870717	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214047432	11	128342737	G	A	ETS1	CCDS8475.1	r.?	-	-	intronic	19	0	0	57	29	50.87719298	0	0	NA	0	0	NA	2.45E-51	2.61870717	2	0	0.38129283	3	0	0.61870717	unphased	2.627380522	1.003312074	2.61870717	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214047669	11	131888448	G	A	OPCML	CCDS8491.1	r.?	-	-	intronic	27	0	0	57	10	17.54385965	0	0	NA	0	0	NA	3.40E-13	2.61870717	2	0	0.38129283	3	0	0.61870717	unphased	0.905993283	0.905993283	1	0.00125	0.9975	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214047679	11	132109522	G	A	OPCML	CCDS8491.1	r.?	-	-	intronic	36	0	0	58	11	18.96551724	0	0	NA	0	0	NA	8.96E-15	4	3	1	1	NA	NA	NA	unphased	1.24137931	1.24137931	1	0.00125	0.99625	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214047729	11	132812457	C	A	ENSG00000183715	CCDS8492.1	r.?	-	-	intronic	14	0	0	73	13	17.80821918	0	0	NA	0	0	NA	7.97E-17	2.49427502	2	0	0.50572498	3	0	0.49427502	unphased	0.897486087	0.897486087	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214048437	12	1234450	G	A	ERC1	CCDS8508.1	r.?	-	-	intronic	24	0	0	196	9	4.591836735	0	0	NA	0	0	NA	8.24E-07	15	13	2	1	NA	NA	NA	unphased	0.805658627	0.805658627	1	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214048476	12	1288308	G	A	ERC1	CCDS8508.1	r.?	-	-	intronic	28	0	0	176	10	5.681818182	0	0	NA	0	0	NA	2.78E-08	15	13	2	1	NA	NA	NA	unphased	0.996900826	0.996900826	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214048945	12	3135787	G	A	TEAD4	CCDS31729.1	r.?	-	-	intronic	46	0	0	141	11	7.80141844	0	0	NA	0	0	NA	1.98E-10	9	7	2	1	NA	NA	NA	unphased	0.90070922	0.90070922	1	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214049137	12	4191738	T	A	-	-	-	-	-	-	12	0	0	81	18	22.22222222	0	0	NA	0	0	NA	1.29E-24	4.679036533	3	1	0.320963467	3	2	0.679036533	unphased	1.605442462	0.802721231	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214049642	12	6019335	C	A	ANO2	CCDS44807.1	r.?	-	-	intronic	19	0	0	180	20	11.11111111	0	0	NA	0	0	NA	7.79E-21	15	13	2	1	NA	NA	NA	unphased	1.949494949	0.974747475	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214049739	12	6226276	G	A	VWF	CCDS8539.1	r.?	-	-	intronic	14	0	0	168	7	4.166666667	0	0	NA	0	0	NA	2.56E-05	15	13	2	1	NA	NA	NA	unphased	0.731060606	0.731060606	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214049803	12	6383563	G	A	-	-	-	-	-	-	9	0	0	141	19	13.4751773	0	0	NA	0	0	NA	1.69E-21	15	13	2	1	NA	NA	NA	unphased	2.364281109	1.182140554	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214049896	12	6770367	G	A	ING4	CCDS8555.1	r.?	-	-	intronic	13	0	0	103	15	14.5631068	0	0	NA	0	0	NA	8.24E-18	9	7	2	1	NA	NA	NA	unphased	1.681376876	0.840688438	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214050124	12	7938054	G	A	NANOGP8	CCDS31736.1	r.?	-	-	upstream	15	0	0	113	9	7.96460177	0	0	NA	0	0	NA	7.30E-09	9	7	2	1	NA	NA	NA	unphased	0.919549477	0.919549477	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214050236	12	8302240	G	A	ZNF705A	CCDS31737.1	r.?	-	-	intronic	28	0	0	181	11	6.077348066	0	0	NA	0	0	NA	2.81E-09	9	7	2	1	NA	NA	NA	unphased	0.701657459	0.701657459	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214050768	12	10304364	C	A	-	-	-	-	-	-	33	0	0	92	14	15.2173913	0	0	NA	0	0	NA	5.34E-17	6.262547385	5	1	0.737452615	5	2	0.262547385	unphased	1.34034812	1.34034812	1	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214051655	12	12711567	G	A	DUSP16	CCDS8650.1	r.?	-	-	intronic	28	0	0	203	28	13.79310345	0	0	NA	1	0	0	3.03E-31	18	16	2	1	NA	NA	NA	unphased	2.833855799	0.9446186	3	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214052069	12	14298139	G	A	-	-	-	-	-	-	18	0	0	111	8	7.207207207	0	0	NA	0	0	NA	1.09E-07	10.39661528	9	1	0.603384719	9	2	0.396615281	unphased	0.932761789	0.932761789	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214052472	12	15971453	G	A	-	-	-	-	-	-	47	0	0	169	26	15.38461538	0	0	NA	0	0	NA	2.05E-30	10.39661528	9	1	0.603384719	9	2	0.396615281	unphased	1.991087666	0.995543833	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214052567	12	16378635	T	A	SLC15A5	ENST00000344941	r.?	-	-	intronic	43	0	0	174	22	12.64367816	0	0	NA	0	0	NA	5.02E-24	10.39661528	9	1	0.603384719	9	2	0.396615281	unphased	1.636353656	1.020562087	1.603384719	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214052827	12	17630288	G	A	-	-	-	-	-	-	18	0	0	155	118	76.12903226	0	0	NA	0	0	NA	1.86E-236	11	10	1	1	NA	NA	NA	unphased	10.31202346	1.031202346	10	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214052999	12	18332612	G	A	-	-	-	-	-	-	36	0	0	216	14	6.481481481	0	0	NA	0	0	NA	8.53E-12	13.23055981	12	1	0.769440192	12	2	0.230559808	unphased	1.022519449	1.022519449	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214053144	12	18655089	C	A	PIK3C2G	CCDS44839.1	r.?	-	-	intronic	31	0	0	216	10	4.62962963	0	0	NA	0	0	NA	1.89E-07	13.23055981	12	1	0.769440192	12	2	0.230559808	unphased	0.730371035	0.730371035	1	0.005	0.995	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214053742	12	19998243	T	A	-	-	-	-	-	-	25	0	0	260	11	4.230769231	0	0	NA	0	0	NA	1.16E-07	19.33517885	18	1	0.664821146	18	2	0.335178854	unphased	0.925719105	0.925719105	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214054189	12	20976953	T	A	SLCO1B3	CCDS8684.1	r.?	-	-	intronic	37	0	0	262	16	6.106870229	0	0	NA	0	0	NA	7.08E-13	19.33517885	18	1	0.664821146	18	2	0.335178854	unphased	1.336221887	1.336221887	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214054644	12	21549571	C	A	SLCO1A2	CCDS8686.1	r.?	-	-	upstream	33	0	0	214	8	3.738317757	0	0	NA	0	0	NA	1.50E-05	19.33517885	18	1	0.664821146	18	2	0.335178854	unphased	0.817967604	0.817967604	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214054778	12	21734603	T	A	GYS2	CCDS8690.1	r.?	-	-	intronic	27	0	0	445	16	3.595505618	0	0	NA	0	0	NA	1.75E-09	19.33517885	18	1	0.664821146	18	2	0.335178854	unphased	0.786719403	0.786719403	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214055184	12	22617810	T	A	KIAA0528	CCDS31758.1	r.?	-	-	intronic	35	0	0	199	19	9.547738693	0	0	NA	0	0	NA	1.31E-18	12	11	1	1	NA	NA	NA	unphased	1.388761992	1.388761992	1	0	0.99625	0.00375	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214055339	12	23096476	G	A	-	-	-	-	-	-	28	0	0	182	18	9.89010989	0	0	NA	0	0	NA	5.51E-18	12	11	1	1	NA	NA	NA	unphased	1.438561439	1.438561439	1	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214055524	12	23768240	T	A	SOX5	CCDS8699.1	r.?	-	-	intronic	23	0	0	290	19	6.551724138	0	0	NA	0	0	NA	1.44E-15	12	11	1	1	NA	NA	NA	unphased	0.952978056	0.952978056	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214055535	12	23804961	C	A	SOX5	CCDS8699.1	r.?	-	-	intronic	29	0	0	246	16	6.504065041	0	0	NA	0	0	NA	2.70E-13	12	11	1	1	NA	NA	NA	unphased	0.946045824	0.946045824	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214055755	12	24379444	C	A	-	-	-	-	-	-	26	0	0	218	11	5.04587156	0	0	NA	0	0	NA	1.94E-08	12	11	1	1	NA	NA	NA	unphased	0.733944954	0.733944954	1	0.005	0.995	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214055782	12	24597724	T	A	-	-	-	-	-	-	38	0	0	115	16	13.91304348	0	0	NA	0	0	NA	1.43E-18	6	5	1	1	NA	NA	NA	unphased	1.188932806	1.188932806	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214055933	12	25225206	C	A	LRMP	CCDS8701.1	r.?	-	-	intronic	28	0	0	190	7	3.684210526	224	0	0	443	19	4.288939052	5.58E-05	10.33066294	9	1	0.669337059	9	2	0.330662941	unphased	0.474383276	1.434643005	0.330662941	0	1	0	2	1	2.71E-12	1	YES	1_1	somatic	custom.pulldown.HiSeq
1352322	PD9768b	1214055964	12	25298986	G	A	CASC1	CCDS41763.1	r.?	-	-	intronic	14	0	0	160	25	15.625	0	0	NA	0	0	NA	1.76E-29	10.33066294	9	1	0.669337059	9	2	0.330662941	unphased	2.011893357	1.005946679	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214056180	12	25995847	G	A	-	-	-	-	-	-	28	0	0	194	13	6.701030928	0	0	NA	0	0	NA	3.09E-11	19	17	2	1	NA	NA	NA	unphased	1.443767573	1.443767573	1	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214056264	12	26089717	G	A	-	-	-	-	-	-	33	0	0	303	10	3.300330033	0	0	NA	0	0	NA	4.01E-06	19	17	2	1	NA	NA	NA	unphased	0.711071107	0.711071107	1	0.0075	0.9925	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214056728	12	27221875	G	A	-	-	-	-	-	-	21	0	0	475	23	4.842105263	0	0	NA	0	0	NA	1.13E-15	19	17	2	1	NA	NA	NA	unphased	1.043253589	1.043253589	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214057021	12	28098292	G	A	-	-	-	-	-	-	17	0	0	199	10	5.025125628	0	0	NA	0	0	NA	8.83E-08	9.203254684	8	1	0.796745316	8	2	0.203254684	unphased	0.590387398	0.590387398	1	0.03375	0.96625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214057204	12	28933415	G	A	-	-	-	-	-	-	34	0	0	149	15	10.06711409	0	0	NA	0	0	NA	2.38E-15	9.203254684	8	1	0.796745316	8	2	0.203254684	unphased	1.182755963	1.182755963	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214057349	12	29172478	G	A	-	-	-	-	-	-	29	0	0	367	11	2.997275204	0	0	NA	0	0	NA	3.37E-06	20	19	1	1	NA	NA	NA	unphased	0.675749319	0.675749319	1	0.00625	0.99375	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214057654	12	29745460	C	A	TMTC1	CCDS8718.1	r.?	-	-	intronic	49	0	0	263	13	4.942965779	0	0	NA	0	0	NA	1.31E-09	20	19	1	1	NA	NA	NA	unphased	1.114414103	1.114414103	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214057902	12	30875414	G	A	CAPRIN2	CCDS31764.1	r.?	-	-	intronic	26	0	0	104	11	10.57692308	0	0	NA	0	0	NA	7.11E-12	8	6	2	1	NA	NA	NA	unphased	1.115384615	1.115384615	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214057945	12	31235741	G	A	DDX11	CCDS41767.1	r.?	-	-	intronic	25	0	0	148	9	6.081081081	0	0	NA	0	0	NA	7.66E-08	8	6	2	1	NA	NA	NA	unphased	0.641277641	0.641277641	1	0.0125	0.9875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214058358	12	33058196	G	A	-	-	-	-	-	-	31	0	0	119	71	59.66386555	0	0	NA	0	0	NA	1.76E-130	8	6	2	1	NA	NA	NA	unphased	6.291825821	1.048637637	6	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214058645	12	34619023	G	A	-	-	-	-	-	-	39	0	0	80	9	11.25	0	0	NA	0	0	NA	3.29E-10	8	6	2	1	NA	NA	NA	unphased	1.186363636	1.186363636	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214059340	12	38531076	G	A	-	-	-	-	-	-	9	0	0	44	16	36.36363636	0	0	NA	0	0	NA	5.57E-26	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	1.839480995	1.215688904	1.513118191	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214059401	12	38838869	G	A	-	-	-	-	-	-	30	0	0	75	17	22.66666667	0	0	NA	0	0	NA	1.72E-23	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	1.14660982	1.14660982	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214059433	12	39244523	G	A	CPNE8	CCDS8733.1	r.?	-	-	intronic	31	0	0	68	13	19.11764706	0	0	NA	0	0	NA	2.96E-17	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	0.967080082	0.967080082	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214059434	12	39257577	G	A	CPNE8	CCDS8733.1	r.?	-	-	intronic	8	0	0	49	9	18.36734694	0	0	NA	0	0	NA	3.35E-12	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	0.929125605	0.929125605	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214059435	12	39269703	T	A	CPNE8	CCDS8733.1	r.?	-	-	intronic	37	0	0	64	17	26.5625	0	0	NA	0	0	NA	8.43E-25	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	1.343683383	1.343683383	1	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214059591	12	41353922	G	A	CNTN1	CCDS8737.1	r.?	-	-	intronic	32	0	0	73	11	15.06849315	0	0	NA	0	0	NA	1.31E-13	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	0.762250686	0.762250686	1	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214059848	12	45378791	T	A	-	-	-	-	-	-	13	0	0	76	15	19.73684211	0	0	NA	0	0	NA	6.51E-20	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	0.998402514	0.998402514	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214059948	12	46761301	G	A	SLC38A2	CCDS8749.1	r.?	-	-	intronic	28	0	0	66	20	30.3030303	0	0	NA	0	0	NA	3.11E-30	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	1.532900829	1.013074086	1.513118191	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214060787	12	56283639	C	A	-	-	-	-	-	-	10	0	0	28	10	35.71428571	0	0	NA	0	0	NA	1.18E-16	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	1.80663312	1.193980173	1.513118191	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214060934	12	57840644	T	A	INHBC	CCDS8938.1	r.?	-	-	intronic	34	0	0	74	18	24.32432432	0	0	NA	0	0	NA	2.13E-25	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	1.230463639	1.230463639	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214061020	12	59022906	G	A	-	-	-	-	-	-	39	0	0	60	20	33.33333333	0	0	NA	0	0	NA	3.30E-31	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	1.686190912	1.114381495	1.513118191	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214061052	12	59674623	G	A	-	-	-	-	-	-	31	0	0	60	16	26.66666667	0	0	NA	0	0	NA	1.86E-23	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	1.34895273	1.34895273	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214061112	12	60780040	G	A	-	-	-	-	-	-	33	0	0	63	16	25.3968254	0	0	NA	0	0	NA	4.48E-23	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	1.284716886	1.284716886	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214061303	12	63424315	G	A	-	-	-	-	-	-	29	0	0	63	8	12.6984127	0	0	NA	0	0	NA	1.18E-09	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	0.642358443	1.251872285	0.513118191	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214061588	12	67490104	G	A	-	-	-	-	-	-	27	0	0	89	33	37.07865169	0	0	NA	0	0	NA	2.37E-52	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	1.875650565	1.239592899	1.513118191	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214061672	12	68673990	G	A	-	-	-	-	-	-	25	0	0	66	14	21.21212121	0	0	NA	0	0	NA	3.71E-19	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	1.073030581	1.073030581	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214061714	12	69297120	T	A	CPM	CCDS8987.1	r.?	-	-	intronic	32	0	0	54	17	31.48148148	0	0	NA	0	0	NA	3.02E-26	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	1.592513639	1.052471412	1.513118191	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214061829	12	70866002	T	A	AC025569.1	ENST00000501222	r.?	-	-	intronic	28	0	0	74	10	13.51351351	0	0	NA	0	0	NA	5.24E-12	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	0.68359091	0.68359091	1	0.00625	0.99375	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214061832	12	70891356	T	A	AC025569.1	ENST00000501222	r.?	-	-	intronic	24	0	0	42	8	19.04761905	0	0	NA	0	0	NA	3.96E-11	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	0.963537664	0.963537664	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214061960	12	73241470	G	A	-	-	-	-	-	-	31	0	0	64	8	12.5	0	0	NA	0	0	NA	1.35E-09	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	0.632321592	1.232311781	0.513118191	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214062039	12	74456495	G	A	-	-	-	-	-	-	31	0	0	59	11	18.6440678	0	0	NA	0	0	NA	1.10E-14	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	0.943123731	0.943123731	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214062045	12	74564508	T	A	-	-	-	-	-	-	10	0	0	47	5	10.63829787	0	0	NA	0	0	NA	4.02E-06	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	0.538146036	1.048775984	0.513118191	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214062112	12	75388400	T	A	-	-	-	-	-	-	33	0	0	60	16	26.66666667	0	0	NA	0	0	NA	1.86E-23	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	1.34895273	1.34895273	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214062113	12	75446010	G	A	KCNC2	CCDS9005.1	r.?	-	-	intronic	34	0	0	68	14	20.58823529	0	0	NA	0	0	NA	5.84E-19	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	1.041470858	1.041470858	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214062310	12	78415567	G	A	NAV3	CCDS41815.1	r.2121g>a	c.1948G>A	p.D650N	missense	38	0	0	68	25	36.76470588	182	0	0	202	57	28.21782178	6.41E-40	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	1.859769388	1.229097237	1.513118191	0	1	0	2	1	3.34E-81	1	YES	1_1	somatic	custom.pulldown.HiSeq
1352322	PD9768b	1214062540	12	82678528	G	A	-	-	-	-	-	-	39	0	0	70	24	34.28571429	0	0	NA	0	0	NA	1.68E-37	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	1.734367795	1.146220966	1.513118191	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214062584	12	83475582	C	A	TMTC2	CCDS9025.1	r.?	-	-	intronic	30	0	0	69	11	15.94202899	0	0	NA	0	0	NA	6.82E-14	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	0.806439132	0.806439132	1	0.00375	0.99625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214062608	12	83869929	G	A	-	-	-	-	-	-	38	0	0	68	25	36.76470588	0	0	NA	0	0	NA	6.41E-40	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	1.859769388	1.229097237	1.513118191	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214062615	12	84011976	G	A	-	-	-	-	-	-	35	0	0	63	16	25.3968254	0	0	NA	0	0	NA	4.48E-23	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	1.284716886	1.284716886	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214062726	12	85699724	T	A	ALX1	CCDS9028.1	r.?	-	-	downstream	39	0	0	67	16	23.88059701	0	0	NA	0	0	NA	1.35E-22	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	1.20801737	1.20801737	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214062817	12	87011878	G	A	-	-	-	-	-	-	31	0	0	83	13	15.6626506	0	0	NA	0	0	NA	4.66E-16	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	0.792306573	0.792306573	1	0.00375	0.99625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214062829	12	87140433	T	A	-	-	-	-	-	-	40	0	0	73	20	27.39726027	0	0	NA	0	0	NA	3.18E-29	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	1.385910339	1.385910339	1	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214062892	12	88262977	G	A	-	-	-	-	-	-	45	0	0	80	9	11.25	0	0	NA	0	0	NA	3.29E-10	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	0.569089433	1.109080603	0.513118191	0.00125	0.99625	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214062962	12	89225965	G	A	-	-	-	-	-	-	34	0	0	58	22	37.93103448	0	0	NA	0	0	NA	1.13E-35	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	1.918768969	1.268089288	1.513118191	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214063083	12	91465387	G	A	-	-	-	-	-	-	28	0	0	70	24	34.28571429	0	0	NA	0	0	NA	1.68E-37	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	1.734367795	1.146220966	1.513118191	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214063100	12	91664930	G	A	-	-	-	-	-	-	39	0	0	58	7	12.06896552	0	0	NA	0	0	NA	1.88E-08	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	0.610517399	1.189818271	0.513118191	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214063202	12	93350665	C	A	-	-	-	-	-	-	24	0	0	52	14	26.92307692	0	0	NA	0	0	NA	9.04E-21	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	1.361923429	1.361923429	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214063369	12	95644200	T	A	VEZT	CCDS44954.1	r.?	-	-	intronic	24	0	0	58	16	27.5862069	0	0	NA	0	0	NA	1.00E-23	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	1.395468341	1.395468341	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214063746	12	101266998	C	A	ANO4	CCDS31884.1	r.?	-	-	intronic	33	0	0	66	17	25.75757576	0	0	NA	0	0	NA	1.52E-24	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	1.302965705	1.302965705	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214063929	12	103559853	G	A	-	-	-	-	-	-	21	0	0	58	5	8.620689655	0	0	NA	0	0	NA	1.15E-05	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	0.436083857	0.849870194	0.513118191	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214064132	12	106133774	G	A	-	-	-	-	-	-	34	0	0	68	17	25	0	0	NA	0	0	NA	2.69E-24	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	1.264643184	1.264643184	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214064239	12	107896667	C	A	BTBD11	CCDS31893.1	r.?	-	-	intronic	21	0	0	55	17	30.90909091	0	0	NA	0	0	NA	4.35E-26	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	1.563558846	1.033335568	1.513118191	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214064813	12	116364837	G	A	-	-	-	-	-	-	12	0	0	48	12	25	0	0	NA	0	0	NA	1.44E-17	3.809816191	2	1	0.190183809	2	2	0.809816191	unphased	1.588817684	1.588817684	1	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214064948	12	118083517	G	A	KSR2	ENST00000425217	r.?	-	-	intronic	24	0	0	59	16	27.11864407	0	0	NA	0	0	NA	1.37E-23	3.809816191	2	1	0.190183809	2	2	0.809816191	unphased	1.723463251	0.861731625	2	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214065241	12	121725126	G	A	CAMKK2	CCDS9216.1	r.?	-	-	intronic	17	0	0	68	18	26.47058824	0	0	NA	0	0	NA	3.83E-26	3.809816191	2	1	0.190183809	2	2	0.809816191	unphased	1.682277548	0.841138774	2	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214065282	12	122145273	G	A	-	-	-	-	-	-	16	0	0	56	6	10.71428571	0	0	NA	0	0	NA	4.09E-07	3.809816191	2	1	0.190183809	2	2	0.809816191	unphased	0.680921865	0.840835083	0.809816191	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214065451	12	124277990	G	A	DNAH10	CCDS9255.2	r.?	-	-	intronic	7	0	0	57	13	22.80701754	0	0	NA	0	0	NA	2.44E-18	3.809816191	2	1	0.190183809	2	2	0.809816191	unphased	1.449447712	1.449447712	1	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214065592	12	126375798	G	A	-	-	-	-	-	-	28	0	0	66	17	25.75757576	0	0	NA	0	0	NA	1.52E-24	3.809816191	2	1	0.190183809	2	2	0.809816191	unphased	1.636963675	0.818481837	2	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214065683	12	128016596	C	A	-	-	-	-	-	-	34	0	0	52	14	26.92307692	0	0	NA	0	0	NA	9.04E-21	3.809816191	2	1	0.190183809	2	2	0.809816191	unphased	1.711034429	0.855517215	2	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214065752	12	129000181	G	A	TMEM132C	CCDS45009.1	r.?	-	-	intronic	14	0	0	41	12	29.26829268	0	0	NA	0	0	NA	1.69E-18	3.809816191	2	1	0.190183809	2	2	0.809816191	unphased	1.86007924	0.93003962	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214065825	12	129774380	G	A	TMEM132D	CCDS9266.1	r.?	-	-	intronic	34	0	0	67	14	20.89552239	0	0	NA	0	0	NA	4.66E-19	3.809816191	2	1	0.190183809	2	2	0.809816191	unphased	1.32796702	1.32796702	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214065994	12	131641475	C	A	-	-	-	-	-	-	26	0	0	43	10	23.25581395	0	0	NA	0	0	NA	1.61E-14	3.809816191	2	1	0.190183809	2	2	0.809816191	unphased	1.477969939	1.477969939	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214066065	12	132114683	G	A	-	-	-	-	-	-	6	0	0	52	7	13.46153846	0	0	NA	0	0	NA	8.58E-09	3.809816191	2	1	0.190183809	2	2	0.809816191	unphased	0.855517215	1.056433823	0.809816191	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214067448	13	28489690	G	A	PDX1	CCDS9327.1	r.?	-	-	upstream	28	0	0	77	23	29.87012987	0	0	NA	0	0	NA	2.24E-34	4	2	2	1	NA	NA	NA	unphased	1.955135773	0.977567887	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214067579	13	29978446	G	A	MTUS2	CCDS45022.1	r.?	-	-	intronic	22	0	0	81	13	16.04938272	0	0	NA	0	0	NA	3.34E-16	4	2	2	1	NA	NA	NA	unphased	1.050505051	1.050505051	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214067635	13	30961923	G	A	-	-	-	-	-	-	20	0	0	62	21	33.87096774	0	0	NA	0	0	NA	7.22E-33	4	2	2	1	NA	NA	NA	unphased	2.217008798	1.108504399	2	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214067685	13	31527544	G	A	C13orf26	CCDS9339.1	r.?	-	-	intronic	35	0	0	72	14	19.44444444	0	0	NA	0	0	NA	1.39E-18	4	2	2	1	NA	NA	NA	unphased	1.272727273	1.272727273	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214067778	13	32494440	G	A	-	-	-	-	-	-	42	0	0	83	7	8.43373494	0	0	NA	0	0	NA	2.33E-07	4	2	2	1	NA	NA	NA	unphased	0.552026287	0.552026287	1	0.0325	0.9675	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214067797	13	32702234	G	A	FRY	CCDS41875.1	r.?	-	-	intronic	41	0	0	60	13	21.66666667	0	0	NA	0	0	NA	5.07E-18	4	2	2	1	NA	NA	NA	unphased	1.418181818	1.418181818	1	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214067879	13	33523136	G	A	-	-	-	-	-	-	38	0	0	58	11	18.96551724	0	0	NA	0	0	NA	8.96E-15	4	2	2	1	NA	NA	NA	unphased	1.24137931	1.24137931	1	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214068002	13	36007394	T	A	NBEA	CCDS45026.1	r.?	-	-	intronic	32	0	0	62	16	25.80645161	0	0	NA	0	0	NA	3.36E-23	3	2	1	1	NA	NA	NA	unphased	1.431085044	1.431085044	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214068317	13	41027997	T	A	-	-	-	-	-	-	28	0	0	47	17	36.17021277	0	0	NA	0	0	NA	1.81E-27	3	2	1	1	NA	NA	NA	unphased	2.005802708	1.002901354	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214069157	13	53237160	G	A	SUGT1	CCDS9436.1	r.?	-	-	intronic	29	0	0	47	10	21.27659574	0	0	NA	0	0	NA	4.27E-14	3	2	1	1	NA	NA	NA	unphased	1.179883946	1.179883946	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214069303	13	55993597	T	A	-	-	-	-	-	-	31	0	0	45	17	37.77777778	0	0	NA	0	0	NA	7.37E-28	3	2	1	1	NA	NA	NA	unphased	2.094949495	1.047474747	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214069316	13	56198557	G	A	-	-	-	-	-	-	36	0	0	74	14	18.91891892	0	0	NA	0	0	NA	2.10E-18	3	2	1	1	NA	NA	NA	unphased	1.049140049	1.049140049	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214069415	13	57943745	G	A	-	-	-	-	-	-	39	0	0	56	8	14.28571429	0	0	NA	0	0	NA	4.48E-10	3	2	1	1	NA	NA	NA	unphased	0.792207792	0.792207792	1	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214069423	13	58045215	C	A	-	-	-	-	-	-	32	0	0	61	23	37.70491803	0	0	NA	0	0	NA	3.73E-37	3	2	1	1	NA	NA	NA	unphased	2.090909091	1.045454545	2	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214069426	13	58058729	G	A	-	-	-	-	-	-	41	0	0	72	26	36.11111111	0	0	NA	0	0	NA	3.29E-41	3	2	1	1	NA	NA	NA	unphased	2.002525253	1.001262626	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214069927	13	64726715	G	A	-	-	-	-	-	-	28	0	0	48	20	41.66666667	0	0	NA	0	0	NA	1.40E-33	3	2	1	1	NA	NA	NA	unphased	2.310606061	1.15530303	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214070098	13	67440705	G	A	PCDH9	CCDS9443.1	r.?	-	-	intronic	15	0	0	66	19	28.78787879	0	0	NA	0	0	NA	2.64E-28	3	2	1	1	NA	NA	NA	unphased	1.596418733	0.798209366	2	0.005	0.995	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214070174	13	68624010	G	A	-	-	-	-	-	-	40	0	0	60	19	31.66666667	0	0	NA	0	0	NA	3.21E-29	3	2	1	1	NA	NA	NA	unphased	1.756060606	0.878030303	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214070195	13	68980985	G	A	-	-	-	-	-	-	25	0	0	65	19	29.23076923	0	0	NA	0	0	NA	1.89E-28	3	2	1	1	NA	NA	NA	unphased	1.620979021	0.81048951	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214070248	13	69638752	T	A	-	-	-	-	-	-	32	0	0	52	7	13.46153846	0	0	NA	0	0	NA	8.58E-09	3	2	1	1	NA	NA	NA	unphased	0.746503497	0.746503497	1	0.005	0.995	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214070371	13	71490341	C	A	-	-	-	-	-	-	32	0	0	54	19	35.18518519	0	0	NA	0	0	NA	2.97E-30	3	2	1	1	NA	NA	NA	unphased	1.951178451	0.975589226	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214070374	13	71581103	C	A	-	-	-	-	-	-	25	0	0	69	11	15.94202899	0	0	NA	0	0	NA	6.82E-14	3	2	1	1	NA	NA	NA	unphased	0.884057971	0.884057971	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214070546	13	74052454	G	A	-	-	-	-	-	-	36	0	0	60	10	16.66666667	0	0	NA	0	0	NA	5.86E-13	3	2	1	1	NA	NA	NA	unphased	0.924242424	0.924242424	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214070766	13	76940050	G	A	-	-	-	-	-	-	34	0	0	44	12	27.27272727	0	0	NA	0	0	NA	4.44E-18	3	2	1	1	NA	NA	NA	unphased	1.512396694	1.512396694	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214070844	13	78494938	G	A	EDNRB	CCDS9461.1	r.?	-	-	upstream	36	0	0	55	18	32.72727273	0	0	NA	0	0	NA	4.61E-28	3	2	1	1	NA	NA	NA	unphased	1.814876033	0.907438017	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214070894	13	79522996	C	A	-	-	-	-	-	-	28	0	0	63	7	11.11111111	0	0	NA	0	0	NA	3.38E-08	3	2	1	1	NA	NA	NA	unphased	0.616161616	0.616161616	1	0.0125	0.9875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214070902	13	79792726	G	A	-	-	-	-	-	-	37	0	0	69	26	37.68115942	0	0	NA	0	0	NA	8.50E-42	3	2	1	1	NA	NA	NA	unphased	2.089591568	1.044795784	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214071026	13	81928218	T	A	-	-	-	-	-	-	44	0	0	61	9	14.75409836	0	0	NA	0	0	NA	2.68E-11	3	2	1	1	NA	NA	NA	unphased	0.818181818	0.818181818	1	0.00375	0.99625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214071115	13	83373215	T	A	-	-	-	-	-	-	40	0	0	79	24	30.37974684	0	0	NA	0	0	NA	5.20E-36	3	2	1	1	NA	NA	NA	unphased	1.684695052	0.842347526	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214071233	13	85156309	G	A	-	-	-	-	-	-	32	0	0	49	5	10.20408163	0	0	NA	0	0	NA	4.96E-06	3	2	1	1	NA	NA	NA	unphased	0.565862709	0.565862709	1	0.02125	0.97875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214071389	13	87911325	G	A	-	-	-	-	-	-	28	0	0	57	7	12.28070175	0	0	NA	0	0	NA	1.66E-08	3	2	1	1	NA	NA	NA	unphased	0.681020734	0.681020734	1	0.00375	0.99625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214071429	13	88323139	C	A	SLITRK5	CCDS9465.1	r.?	-	-	upstream	33	0	0	46	15	32.60869565	0	0	NA	0	0	NA	1.35E-23	3	2	1	1	NA	NA	NA	unphased	1.808300395	0.904150198	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214071488	13	89316598	G	A	-	-	-	-	-	-	30	0	0	65	12	18.46153846	0	0	NA	0	0	NA	7.70E-16	3	2	1	1	NA	NA	NA	unphased	1.023776224	1.023776224	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214071524	13	89762926	G	A	-	-	-	-	-	-	35	0	0	52	11	21.15384615	0	0	NA	0	0	NA	2.44E-15	3	2	1	1	NA	NA	NA	unphased	1.173076923	1.173076923	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214071723	13	92878497	G	A	GPC5	CCDS9468.1	r.?	-	-	intronic	40	0	0	47	18	38.29787234	0	0	NA	0	0	NA	1.52E-29	3	2	1	1	NA	NA	NA	unphased	2.123791103	1.061895551	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214071816	13	94298474	T	A	GPC6	CCDS9469.1	r.?	-	-	intronic	29	0	0	56	18	32.14285714	0	0	NA	0	0	NA	6.76E-28	3	2	1	1	NA	NA	NA	unphased	1.782467532	0.891233766	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214072176	13	100058071	C	A	-	-	-	-	-	-	38	0	0	72	9	12.5	0	0	NA	0	0	NA	1.25E-10	3	2	1	1	NA	NA	NA	unphased	0.693181818	0.693181818	1	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214072359	13	102582421	C	A	FGF14	CCDS9500.1	r.?	-	-	intronic	41	0	0	60	26	43.33333333	0	0	NA	0	0	NA	8.84E-44	3	2	1	1	NA	NA	NA	unphased	2.403030303	1.201515152	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214072614	13	106788685	T	A	-	-	-	-	-	-	42	0	0	78	16	20.51282051	0	0	NA	0	0	NA	1.96E-21	3	2	1	1	NA	NA	NA	unphased	1.137529138	1.137529138	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214072908	13	111008773	G	A	COL4A2	CCDS41907.1	r.?	-	-	intronic	9	0	0	53	12	22.64150943	0	0	NA	0	0	NA	5.39E-17	3	2	1	1	NA	NA	NA	unphased	1.255574614	1.255574614	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214072920	13	111112737	G	A	COL4A2	CCDS41907.1	r.?	-	-	intronic	26	0	0	64	11	17.1875	0	0	NA	0	0	NA	2.85E-14	3	2	1	1	NA	NA	NA	unphased	0.953125	0.953125	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214073006	13	112227131	G	A	-	-	-	-	-	-	42	0	0	71	23	32.3943662	0	0	NA	0	0	NA	2.51E-35	3	2	1	1	NA	NA	NA	unphased	1.796414853	0.898207426	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214073023	13	112615616	G	A	-	-	-	-	-	-	26	0	0	67	13	19.40298507	0	0	NA	0	0	NA	2.41E-17	3	2	1	1	NA	NA	NA	unphased	1.075983718	1.075983718	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214073094	13	113029000	G	A	C13orf28	CCDS9524.1	r.?	-	-	upstream	22	0	0	51	20	39.21568627	0	0	NA	0	0	NA	6.38E-33	3	2	1	1	NA	NA	NA	unphased	2.174688057	1.087344029	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214073740	14	19785916	C	A	-	-	-	-	-	-	11	0	0	44	17	38.63636364	0	0	NA	0	0	NA	4.61E-28	1.777411379	1	0	0.222588621	2	0	0.777411379	unphased	1.670198198	0.939680154	1.777411379	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214073845	14	20993712	T	A	-	-	-	-	-	-	35	0	0	57	16	28.07017544	0	0	NA	0	0	NA	7.28E-24	1.777411379	1	0	0.222588621	2	0	0.777411379	unphased	1.213436049	1.213436049	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214074027	14	24124361	G	A	-	-	-	-	-	-	28	0	0	48	23	47.91666667	0	0	NA	0	0	NA	3.27E-40	1.777411379	1	0	0.222588621	2	0	0.777411379	unphased	2.071373256	1.165387642	1.777411379	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214074080	14	25573885	T	A	-	-	-	-	-	-	15	0	0	56	6	10.71428571	0	0	NA	0	0	NA	4.09E-07	1.777411379	1	0	0.222588621	2	0	0.777411379	unphased	0.463164206	0.595777498	0.777411379	0.02	0.98	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214074114	14	26095982	T	A	-	-	-	-	-	-	35	0	0	61	18	29.50819672	0	0	NA	0	0	NA	4.08E-27	1.777411379	1	0	0.222588621	2	0	0.777411379	unphased	1.275599781	1.275599781	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214074141	14	26609454	G	A	-	-	-	-	-	-	27	0	0	54	20	37.03703704	0	0	NA	0	0	NA	2.61E-32	1.777411379	1	0	0.222588621	2	0	0.777411379	unphased	1.601061454	0.900782718	1.777411379	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214074419	14	32386534	G	A	-	-	-	-	-	-	29	0	0	54	26	48.14814815	0	0	NA	0	0	NA	2.44E-45	1.764536825	1	0	0.235463175	2	0	0.764536825	unphased	2.07518103	1.176048582	1.764536825	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214074878	14	39997204	G	A	-	-	-	-	-	-	22	0	0	44	15	34.09090909	0	0	NA	0	0	NA	6.12E-24	1.764536825	1	0	0.235463175	2	0	0.764536825	unphased	1.46931524	1.46931524	1	0	0.99625	0.00375	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214074985	14	41876455	T	A	-	-	-	-	-	-	35	0	0	57	23	40.35087719	0	0	NA	0	0	NA	5.38E-38	1.764536825	1	0	0.235463175	2	0	0.764536825	unphased	1.739119325	0.98559537	1.764536825	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214075402	14	49620525	G	A	-	-	-	-	-	-	10	0	0	53	24	45.28301887	0	0	NA	0	0	NA	4.04E-41	1.764536825	1	0	0.235463175	2	0	0.764536825	unphased	1.951694205	1.10606601	1.764536825	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214075739	14	55390857	G	A	-	-	-	-	-	-	17	0	0	44	22	50	0	0	NA	0	0	NA	4.51E-39	1.764536825	1	0	0.235463175	2	0	0.764536825	unphased	2.154995685	1.221281219	1.764536825	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214075860	14	57964296	G	A	C14orf105	CCDS9730.1	r.?	-	-	upstream	45	0	0	62	26	41.93548387	0	0	NA	0	0	NA	2.63E-43	1.764536825	1	0	0.235463175	2	0	0.764536825	unphased	1.807415736	1.024300378	1.764536825	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214076147	14	63613230	C	A	-	-	-	-	-	-	32	0	0	45	20	44.44444444	0	0	NA	0	0	NA	2.68E-34	1.764536825	1	0	0.235463175	2	0	0.764536825	unphased	1.91555172	1.085583306	1.764536825	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214076208	14	64684876	C	A	SYNE2	CCDS9761.2	r.?	-	-	intronic	26	0	0	41	14	34.14634146	0	0	NA	0	0	NA	1.90E-22	1.764536825	1	0	0.235463175	2	0	0.764536825	unphased	1.47170437	1.47170437	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214076496	14	70780445	G	A	-	-	-	-	-	-	43	0	0	44	18	40.90909091	0	0	NA	0	0	NA	3.47E-30	1.764536825	1	0	0.235463175	2	0	0.764536825	unphased	1.763178288	0.999230089	1.764536825	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214076497	14	70781422	G	A	-	-	-	-	-	-	26	0	0	55	22	40	0	0	NA	0	0	NA	2.65E-36	1.764536825	1	0	0.235463175	2	0	0.764536825	unphased	1.723996548	0.977024976	1.764536825	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214076596	14	72349991	C	A	-	-	-	-	-	-	39	0	0	36	12	33.33333333	0	0	NA	0	0	NA	2.73E-19	2.092087904	2	0	0.907912096	2	1	0.092087904	unphased	1.545847483	1.545847483	1	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214076669	14	73710411	C	A	PAPLN	CCDS32114.1	r.?	-	-	intronic	27	0	0	72	29	40.27777778	0	0	NA	0	0	NA	1.73E-47	2.092087904	2	0	0.907912096	2	1	0.092087904	unphased	1.867899042	0.979027831	1.907912096	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214077127	14	81640390	G	A	-	-	-	-	-	-	31	0	0	52	22	42.30769231	0	0	NA	0	0	NA	5.59E-37	2.092087904	2	0	0.907912096	2	1	0.092087904	unphased	1.96203719	0.981018595	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214077320	14	85965570	G	A	-	-	-	-	-	-	34	0	0	55	22	40	0	0	NA	0	0	NA	2.65E-36	2.092087904	2	0	0.907912096	2	1	0.092087904	unphased	1.85501698	0.972275915	1.907912096	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214077925	14	96636090	G	A	-	-	-	-	-	-	27	0	0	58	23	39.65517241	0	0	NA	0	0	NA	8.87E-38	2.092087904	2	0	0.907912096	2	1	0.092087904	unphased	1.839025454	0.963894226	1.907912096	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214078351	14	106011032	G	A	-	-	-	-	-	-	37	0	0	66	29	43.93939394	0	0	NA	0	0	NA	6.96E-49	2.092087904	2	0	0.907912096	2	1	0.092087904	unphased	2.037708046	1.018854023	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214079527	15	20607254	T	A	-	-	-	-	-	-	54	0	0	110	13	11.81818182	0	0	NA	0	0	NA	2.06E-14	2	1	1	1	NA	NA	NA	unphased	0.537190083	0.537190083	1	0.20875	0.79125	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214079825	15	24364859	C	A	-	-	-	-	-	-	18	0	0	39	10	25.64102564	0	0	NA	0	0	NA	5.44E-15	2	1	1	1	NA	NA	NA	unphased	1.165501166	1.165501166	1	0.00125	0.9975	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214079908	15	25338220	G	A	SNORD116-21	ENST00000384507	r.?	-	-	downstream	37	0	0	58	11	18.96551724	0	0	NA	0	0	NA	8.96E-15	2	1	1	1	NA	NA	NA	unphased	0.862068966	0.862068966	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214080030	15	27972234	G	A	-	-	-	-	-	-	35	0	0	57	15	26.31578947	0	0	NA	0	0	NA	5.53E-22	2	1	1	1	NA	NA	NA	unphased	1.196172249	1.196172249	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214080057	15	28530550	G	A	HERC2	CCDS10021.1	r.?	-	-	intronic	34	0	0	58	11	18.96551724	0	0	NA	0	0	NA	8.96E-15	2	1	1	1	NA	NA	NA	unphased	0.862068966	0.862068966	1	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214080066	15	28675657	G	A	-	-	-	-	-	-	7	0	0	90	13	14.44444444	0	0	NA	0	0	NA	1.40E-15	2	1	1	1	NA	NA	NA	unphased	0.656565657	0.656565657	1	0.01375	0.98625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214080526	15	36694171	G	A	-	-	-	-	-	-	28	0	0	51	11	21.56862745	0	0	NA	0	0	NA	1.94E-15	2	1	1	1	NA	NA	NA	unphased	0.980392157	0.980392157	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214080933	15	44745201	T	A	CTDSPL2	CCDS10110.1	r.?	-	-	intronic	29	0	0	53	8	15.09433962	0	0	NA	0	0	NA	2.83E-10	2	1	1	1	NA	NA	NA	unphased	0.686106346	0.686106346	1	0.005	0.995	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214080972	15	45640356	C	A	-	-	-	-	-	-	21	0	0	52	8	15.38461538	0	0	NA	0	0	NA	2.42E-10	2	1	1	1	NA	NA	NA	unphased	0.699300699	0.699300699	1	0.00375	0.99625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214081009	15	46689116	T	A	-	-	-	-	-	-	32	0	0	57	14	24.56140351	0	0	NA	0	0	NA	3.84E-20	2	1	1	1	NA	NA	NA	unphased	1.116427432	1.116427432	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214081157	15	49152223	C	A	SHC4	CCDS10130.1	r.?	-	-	intronic	30	0	0	54	10	18.51851852	0	0	NA	0	0	NA	1.91E-13	2	1	1	1	NA	NA	NA	unphased	0.841750842	0.841750842	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214081203	15	50264889	G	A	ATP8B4	CCDS32238.1	r.1275c>u	c.1133C>T	p.T378M	missense	33	0	0	46	11	23.91304348	297	0	0	170	25	14.70588235	5.55E-16	2	1	1	1	NA	NA	NA	unphased	1.086956522	1.086956522	1	0	0.99875	0.00125	2	1	8.62E-29	1	YES	1_1	somatic	custom.pulldown.HiSeq
1352322	PD9768b	1214081248	15	50865236	T	A	TRPM7	CCDS42035.1	r.?	-	-	intronic	40	0	0	59	12	20.33898305	0	0	NA	0	0	NA	2.20E-16	2	1	1	1	NA	NA	NA	unphased	0.92449923	0.92449923	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214081249	15	50865237	C	A	TRPM7	CCDS42035.1	r.?	-	-	intronic	41	0	0	59	12	20.33898305	0	0	NA	0	0	NA	2.20E-16	2	1	1	1	NA	NA	NA	unphased	0.92449923	0.92449923	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214081271	15	51210505	G	A	AP4E1	CCDS32240.1	r.?	-	-	intronic	18	0	0	40	8	20	0	0	NA	0	0	NA	2.61E-11	2	1	1	1	NA	NA	NA	unphased	0.909090909	0.909090909	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214081280	15	51432608	C	A	-	-	-	-	-	-	32	0	0	74	11	14.86486486	0	0	NA	0	0	NA	1.53E-13	2	1	1	1	NA	NA	NA	unphased	0.675675676	0.675675676	1	0.005	0.99375	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214081417	15	54794367	C	A	UNC13C	CCDS45264.1	r.?	-	-	intronic	29	0	0	55	14	25.45454545	0	0	NA	0	0	NA	2.19E-20	2	1	1	1	NA	NA	NA	unphased	1.157024793	1.157024793	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214081452	15	55426659	C	A	-	-	-	-	-	-	32	0	0	68	15	22.05882353	0	0	NA	0	0	NA	1.06E-20	2	1	1	1	NA	NA	NA	unphased	1.002673797	1.002673797	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214081636	15	59552599	G	A	MYO1E	CCDS32254.1	r.?	-	-	intronic	23	0	0	56	11	19.64285714	0	0	NA	0	0	NA	5.91E-15	2	1	1	1	NA	NA	NA	unphased	0.892857143	0.892857143	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214081878	15	63901485	G	A	HERC1	CCDS45277.1	r.?	-	-	intronic	6	0	0	48	23	47.91666667	0	0	NA	0	0	NA	3.27E-40	2	1	1	1	NA	NA	NA	unphased	2.178030303	2.178030303	1	0	0.815	0.185	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214082149	15	68461018	T	A	PIAS1	CCDS45290.1	r.?	-	-	intronic	36	0	0	48	7	14.58333333	0	0	NA	0	0	NA	4.81E-09	2	1	1	1	NA	NA	NA	unphased	0.662878788	0.662878788	1	0.00875	0.99125	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214082313	15	71664859	C	A	THSD4	CCDS10238.2	r.?	-	-	intronic	24	0	0	47	12	25.53191489	0	0	NA	0	0	NA	1.09E-17	2	1	1	1	NA	NA	NA	unphased	1.160541586	1.160541586	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214083364	15	92564088	G	A	SLCO3A1	CCDS10371.1	r.?	-	-	intronic	43	0	0	59	14	23.72881356	0	0	NA	0	0	NA	6.58E-20	2	1	1	1	NA	NA	NA	unphased	1.078582435	1.078582435	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214083485	15	95539072	C	A	-	-	-	-	-	-	20	0	0	53	14	26.41509434	2	0	0	0	0	NA	1.22E-20	2	1	1	1	NA	NA	NA	unphased	1.200686106	1.200686106	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214083534	15	96609812	T	A	-	-	-	-	-	-	30	0	0	40	5	12.5	0	0	NA	0	0	NA	1.78E-06	2	1	1	1	NA	NA	NA	unphased	0.568181818	0.568181818	1	0.02625	0.97375	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214083655	15	98777072	G	A	-	-	-	-	-	-	18	0	0	46	10	21.73913043	0	0	NA	0	0	NA	3.38E-14	2	1	1	1	NA	NA	NA	unphased	0.988142292	0.988142292	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214083674	15	99152460	C	A	-	-	-	-	-	-	10	0	0	54	19	35.18518519	0	0	NA	0	0	NA	2.97E-30	2	1	1	1	NA	NA	NA	unphased	1.599326599	1.599326599	1	0	0.9925	0.0075	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214083811	15	101771212	G	A	CHSY1	ENST00000254190	r.?	-	-	intronic	30	0	0	67	26	38.80597015	0	0	NA	0	0	NA	3.31E-42	3.107689431	2	1	0.892310569	2	2	0.107689431	unphased	2.193757364	1.096878682	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214083818	15	101866617	G	A	PCSK6	ENST00000331826	r.2142c>u	c.2142C>T	p.C714C	silent	10	0	0	72	23	31.94444444	245	0	0	210	63	30	3.67E-35	3.107689431	2	1	0.892310569	2	2	0.107689431	unphased	1.805865437	0.954317683	1.892310569	0	1	0	2	1	1.62E-91	1	YES	1_1	somatic	custom.pulldown.HiSeq
1352322	PD9768b	1214084055	16	2767507	G	A	PRSS27	CCDS10476.1	r.?	-	-	intronic	7	0	0	63	16	25.3968254	0	0	NA	0	0	NA	4.48E-23	5.787524616	3	2	0.212475384	3	3	0.787524616	unphased	2.116312168	0.956535916	2.212475384	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214084100	16	3326913	G	A	-	-	-	-	-	-	37	0	0	73	14	19.17808219	0	0	NA	0	0	NA	1.71E-18	5.787524616	3	2	0.212475384	3	3	0.787524616	unphased	1.598105593	0.799052796	2	0.00375	0.99625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214084303	16	5764870	G	A	-	-	-	-	-	-	40	0	0	53	13	24.52830189	0	0	NA	0	0	NA	8.53E-19	3.500213656	2	1	0.499786344	2	2	0.500213656	unphased	1.482899748	1.482899748	1	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214084316	16	5940398	T	A	-	-	-	-	-	-	21	0	0	54	12	22.22222222	0	0	NA	0	0	NA	6.90E-17	3.500213656	2	1	0.499786344	2	2	0.500213656	unphased	1.343481823	1.343481823	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214084340	16	6133627	G	A	-	-	-	-	-	-	10	0	0	56	19	33.92857143	0	0	NA	0	0	NA	6.79E-30	3.500213656	2	1	0.499786344	2	2	0.500213656	unphased	2.051208854	1.025604427	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214084700	16	10178364	G	A	GRIN2A	CCDS10539.1	r.?	-	-	intronic	38	0	0	56	19	33.92857143	0	0	NA	0	0	NA	6.79E-30	3.500213656	2	1	0.499786344	2	2	0.500213656	unphased	2.051208854	1.025604427	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214084772	16	10997000	T	A	CIITA	CCDS10544.1	r.?	-	-	intronic	31	0	0	72	9	12.5	0	0	NA	0	0	NA	1.25E-10	3.500213656	2	1	0.499786344	2	2	0.500213656	unphased	0.755708525	0.755708525	1	0.0075	0.9925	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214084923	16	12855802	G	A	CPPED1	CCDS42120.1	r.?	-	-	intronic	30	0	0	51	6	11.76470588	0	0	NA	0	0	NA	2.32E-07	3.500213656	2	1	0.499786344	2	2	0.500213656	unphased	0.711255083	0.711255083	1	0.00625	0.99375	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214085182	16	15526818	G	A	C16orf45	CCDS10561.1	r.?	-	-	upstream	31	0	0	68	14	20.58823529	0	0	NA	0	0	NA	5.84E-19	3.500213656	2	1	0.499786344	2	2	0.500213656	unphased	1.244696394	1.244696394	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214085287	16	16772355	C	A	-	-	-	-	-	-	8	0	0	28	4	14.28571429	0	0	NA	0	0	NA	1.16E-05	3.500213656	2	1	0.499786344	2	2	0.500213656	unphased	0.863666886	0.863666886	1	0.00375	0.995	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214085335	16	17559326	C	A	XYLT1	CCDS10569.1	r.?	-	-	intronic	35	0	0	74	14	18.91891892	0	0	NA	0	0	NA	2.10E-18	3.500213656	2	1	0.499786344	2	2	0.500213656	unphased	1.143775065	1.143775065	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214085370	16	17862564	C	A	-	-	-	-	-	-	33	0	0	60	8	13.33333333	0	0	NA	0	0	NA	7.93E-10	3.500213656	2	1	0.499786344	2	2	0.500213656	unphased	0.806089094	0.806089094	1	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214085901	16	24570431	T	A	RBBP6	CCDS10621.1	r.?	-	-	intronic	35	0	0	53	17	32.0754717	0	0	NA	0	0	NA	2.08E-26	1	1	0	1	NA	NA	NA	unphased	1.137221269	1.137221269	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214086088	16	26993794	C	A	-	-	-	-	-	-	22	0	0	55	10	18.18181818	0	0	NA	0	0	NA	2.33E-13	3	2	1	1	NA	NA	NA	unphased	1.008264463	1.008264463	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214086165	16	28129833	C	A	XPO6	CCDS42135.1	r.?	-	-	intronic	26	0	0	71	10	14.08450704	0	0	NA	0	0	NA	3.42E-12	3	2	1	1	NA	NA	NA	unphased	0.781049936	0.781049936	1	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214087148	16	32453104	G	A	-	-	-	-	-	-	53	0	0	112	10	8.928571429	0	0	NA	0	0	NA	3.48E-10	3	2	1	1	NA	NA	NA	unphased	0.49512987	0.49512987	1	0.19375	0.80625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214088185	16	33360997	C	A	-	-	-	-	-	-	55	0	0	109	7	6.422018349	0	0	NA	0	0	NA	1.49E-06	3	2	1	1	NA	NA	NA	unphased	0.356130108	0.356130108	1	0.77	0.23	0	1	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214088977	16	33932387	C	A	-	-	-	-	-	-	43	0	0	105	9	8.571428571	0	0	NA	0	0	NA	3.81E-09	3	2	1	1	NA	NA	NA	unphased	0.475324675	0.475324675	1	0.21375	0.78625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214090640	16	48438275	G	A	-	-	-	-	-	-	15	0	0	46	20	43.47826087	0	0	NA	0	0	NA	4.72E-34	1.755790266	1	0	0.244209734	2	0	0.755790266	unphased	1.87010644	1.065108103	1.755790266	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214090644	16	48592357	T	A	N4BP1	CCDS45479.1	r.?	-	-	intronic	36	0	0	47	15	31.91489362	0	0	NA	0	0	NA	1.97E-23	1.755790266	1	0	0.244209734	2	0	0.755790266	unphased	1.372737706	1.372737706	1	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214090660	16	48971558	T	A	-	-	-	-	-	-	15	0	0	41	18	43.90243902	0	0	NA	0	0	NA	6.91E-31	1.755790266	1	0	0.244209734	2	0	0.755790266	unphased	1.888351381	1.075499402	1.755790266	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214090956	16	54345927	G	A	-	-	-	-	-	-	21	0	0	38	9	23.68421053	0	0	NA	0	0	NA	2.79E-13	1.755790266	1	0	0.244209734	2	0	0.755790266	unphased	1.018715876	1.018715876	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214091737	16	66039627	G	A	-	-	-	-	-	-	33	0	0	65	29	44.61538462	0	0	NA	0	0	NA	3.92E-49	3.175765079	2	1	0.824234921	2	2	0.175765079	unphased	2.55254414	1.27627207	2	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214091760	16	66430404	G	A	CDH5	CCDS10804.1	r.?	-	-	intronic	34	0	0	73	13	17.80821918	0	0	NA	0	0	NA	7.97E-17	3.175765079	2	1	0.824234921	2	2	0.175765079	unphased	1.01884733	1.01884733	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214091787	16	66922138	T	A	PDP2	CCDS10822.1	r.?	-	-	downstream	19	0	0	37	9	24.32432432	0	0	NA	0	0	NA	2.14E-13	3.175765079	2	1	0.824234921	2	2	0.175765079	unphased	1.391648017	1.391648017	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214091797	16	67031366	G	A	CES8	CCDS42174.1	r.?	-	-	intronic	39	0	0	48	6	12.5	0	0	NA	0	0	NA	1.60E-07	3.175765079	2	1	0.824234921	2	2	0.175765079	unphased	0.715152453	0.715152453	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214092369	16	73875022	C	A	-	-	-	-	-	-	24	0	0	66	22	33.33333333	0	0	NA	0	0	NA	3.52E-34	3.175765079	2	1	0.824234921	2	2	0.175765079	unphased	1.907073208	1.045409879	1.824234921	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214092404	16	74223151	G	A	AC009120.1	ENST00000510251	r.?	-	-	downstream	28	0	0	63	21	33.33333333	0	0	NA	0	0	NA	1.08E-32	3.175765079	2	1	0.824234921	2	2	0.175765079	unphased	1.907073208	1.045409879	1.824234921	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214092740	16	78741440	C	A	WWOX	CCDS42196.1	r.?	-	-	intronic	35	0	0	75	18	24	0	0	NA	0	0	NA	2.78E-25	3.175765079	2	1	0.824234921	2	2	0.175765079	unphased	1.37309271	1.37309271	1	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214092825	16	79877452	C	A	-	-	-	-	-	-	29	0	0	69	25	36.23188406	0	0	NA	0	0	NA	1.00E-39	3.175765079	2	1	0.824234921	2	2	0.175765079	unphased	2.072905661	1.036452831	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214092831	16	79933162	G	A	-	-	-	-	-	-	32	0	0	60	13	21.66666667	0	0	NA	0	0	NA	5.07E-18	3.175765079	2	1	0.824234921	2	2	0.175765079	unphased	1.239597585	1.239597585	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214092854	16	80331168	T	A	-	-	-	-	-	-	36	0	0	76	14	18.42105263	0	0	NA	0	0	NA	3.14E-18	3.175765079	2	1	0.824234921	2	2	0.175765079	unphased	1.053908878	1.053908878	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214093095	16	83260692	T	A	CDH13	ENST00000268613	r.?	-	-	intronic	26	0	0	59	23	38.98305085	0	0	NA	0	0	NA	1.45E-37	3.175765079	2	1	0.824234921	2	2	0.175765079	unphased	2.230305955	1.115152978	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214093263	16	85481543	G	A	-	-	-	-	-	-	6	0	0	79	15	18.98734177	0	0	NA	0	0	NA	1.22E-19	3.175765079	2	1	0.824234921	2	2	0.175765079	unphased	1.086307524	1.086307524	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214094067	17	1562331	T	A	PRPF8	CCDS11010.1	r.?	-	-	intronic	9	0	0	88	9	10.22727273	0	0	NA	0	0	NA	7.82E-10	7	4	3	1	NA	NA	NA	unphased	0.976239669	0.976239669	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214094846	17	8626925	G	A	-	-	-	-	-	-	8	0	0	59	16	27.11864407	0	0	NA	0	0	NA	1.37E-23	3	2	1	1	NA	NA	NA	unphased	1.50385208	0.75192604	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214094867	17	8913391	G	A	-	-	-	-	-	-	28	0	0	58	23	39.65517241	0	0	NA	0	0	NA	8.87E-38	3	2	1	1	NA	NA	NA	unphased	2.199059561	1.099529781	2	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214095136	17	12189025	G	A	-	-	-	-	-	-	28	0	0	49	16	32.65306122	0	0	NA	0	0	NA	4.37E-25	3	2	1	1	NA	NA	NA	unphased	1.810760668	0.905380334	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214095306	17	14219435	G	A	HS3ST3B1	CCDS11167.1	r.?	-	-	intronic	33	0	0	51	16	31.37254902	0	0	NA	0	0	NA	9.28E-25	3	2	1	1	NA	NA	NA	unphased	1.739750446	0.869875223	2	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214095346	17	14854332	G	A	-	-	-	-	-	-	34	0	0	62	8	12.90322581	0	0	NA	0	0	NA	1.04E-09	3	2	1	1	NA	NA	NA	unphased	0.715542522	0.715542522	1	0.01	0.99	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214095381	17	15387205	G	A	CDRT4	CCDS32572.1	r.?	-	-	intronic	34	0	0	59	5	8.474576271	0	0	NA	0	0	NA	1.25E-05	3	2	1	1	NA	NA	NA	unphased	0.469953775	0.469953775	1	0.04375	0.95625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214095599	17	17333119	T	A	-	-	-	-	-	-	27	0	0	63	7	11.11111111	0	0	NA	0	0	NA	3.38E-08	3	2	1	1	NA	NA	NA	unphased	0.616161616	0.616161616	1	0.0125	0.9875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214095779	17	19783040	G	A	-	-	-	-	-	-	30	0	0	59	11	18.6440678	0	0	NA	0	0	NA	1.10E-14	3	2	1	1	NA	NA	NA	unphased	1.033898305	1.033898305	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214095810	17	20139470	G	A	CYTSB	CCDS42280.1	r.?	-	-	intronic	24	0	0	63	11	17.46031746	0	0	NA	0	0	NA	2.37E-14	3	2	1	1	NA	NA	NA	unphased	0.968253968	0.968253968	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214096539	17	21691369	G	A	-	-	-	-	-	-	37	0	0	66	29	43.93939394	0	0	NA	0	0	NA	6.96E-49	3	2	1	1	NA	NA	NA	unphased	2.436639118	1.218319559	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214097568	17	26355658	C	A	-	-	-	-	-	-	20	0	0	68	25	36.76470588	0	0	NA	0	0	NA	6.41E-40	3	2	1	1	NA	NA	NA	unphased	2.038770053	1.019385027	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214098181	17	35195489	G	A	-	-	-	-	-	-	13	0	0	68	33	48.52941176	0	0	NA	0	0	NA	2.71E-57	2.076017236	2	0	0.923982764	2	1	0.076017236	unphased	2.242773071	1.121386535	2	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214098669	17	43430249	C	A	-	-	-	-	-	-	7	0	0	53	23	43.39622642	0	0	NA	0	0	NA	6.43E-39	2.076017236	2	0	0.923982764	2	1	0.076017236	unphased	2.005544358	1.002772179	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214099476	17	53819634	G	A	-	-	-	-	-	-	40	0	0	76	10	13.15789474	0	0	NA	0	0	NA	6.90E-12	2.076017236	2	0	0.923982764	2	1	0.076017236	unphased	0.608088392	0.608088392	1	0.0275	0.9725	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214100563	17	70823109	C	A	SLC39A11	CCDS11690.1	r.?	-	-	intronic	35	0	0	52	23	44.23076923	0	0	NA	0	0	NA	3.66E-39	2.076017236	2	0	0.923982764	2	1	0.076017236	unphased	2.044112519	1.022056259	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214101367	18	2356109	G	A	-	-	-	-	-	-	40	0	0	55	25	45.45454545	0	0	NA	0	0	NA	7.96E-43	2	2	0	1	NA	NA	NA	unphased	2.066115702	1.033057851	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214101668	18	7099793	C	A	LAMA1	CCDS32787.1	r.?	-	-	intronic	13	0	0	64	26	40.625	0	0	NA	0	0	NA	7.46E-43	2	2	0	1	NA	NA	NA	unphased	1.846590909	0.923295455	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214101967	18	12218487	C	A	-	-	-	-	-	-	37	0	0	48	14	29.16666667	0	0	NA	0	0	NA	2.51E-21	5	4	1	1	NA	NA	NA	unphased	2.200757576	1.100378788	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214102850	18	15266180	G	A	-	-	-	-	-	-	28	0	0	47	16	34.04255319	0	0	NA	2	0	0	1.98E-25	5	4	1	1	NA	NA	NA	unphased	2.568665377	0.856221792	3	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214103403	18	19888545	C	A	-	-	-	-	-	-	35	0	0	131	20	15.26717557	0	0	NA	0	0	NA	1.11E-23	5	4	1	1	NA	NA	NA	unphased	1.151977793	1.151977793	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214103628	18	21060274	G	A	RIOK3	CCDS11877.1	r.?	-	-	intronic	29	0	0	121	14	11.57024793	0	0	NA	0	0	NA	2.80E-15	5	4	1	1	NA	NA	NA	unphased	0.873027799	0.873027799	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214103695	18	21353476	G	A	LAMA3	CCDS42419.1	r.1284g>a	c.1198G>A	p.V400I	missense	35	0	0	123	22	17.88617886	200	0	0	302	46	15.23178808	1.68E-27	5	4	1	1	NA	NA	NA	unphased	1.349593496	1.349593496	1	0	0.99875	0.00125	2	1	2.39E-52	1	YES	1_1	somatic	custom.pulldown.HiSeq
1352322	PD9768b	1214103908	18	22632672	G	A	-	-	-	-	-	-	40	0	0	106	24	22.64150943	0	0	NA	0	0	NA	1.56E-32	5	4	1	1	NA	NA	NA	unphased	1.708404803	0.854202401	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214104190	18	24078522	G	A	KCTD1	CCDS45844.1	r.?	-	-	intronic	41	0	0	134	11	8.208955224	0	0	NA	0	0	NA	1.14E-10	5	4	1	1	NA	NA	NA	unphased	0.619402985	0.619402985	1	0.03	0.97	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214104426	18	25868107	C	A	-	-	-	-	-	-	43	0	0	113	17	15.04424779	2	0	0	0	0	NA	3.06E-20	5	4	1	1	NA	NA	NA	unphased	1.135156879	1.135156879	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214105005	18	29315178	C	A	-	-	-	-	-	-	18	0	0	124	25	20.16129032	0	0	NA	0	0	NA	1.92E-32	5	4	1	1	NA	NA	NA	unphased	1.521260997	0.760630499	2	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214105157	18	30329237	G	A	KLHL14	CCDS32813.1	r.?	-	-	intronic	29	0	0	98	14	14.28571429	0	0	NA	0	0	NA	1.34E-16	5	4	1	1	NA	NA	NA	unphased	1.077922078	1.077922078	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214105194	18	30467403	T	A	-	-	-	-	-	-	31	0	0	101	16	15.84158416	0	0	NA	0	0	NA	1.63E-19	5	4	1	1	NA	NA	NA	unphased	1.195319532	1.195319532	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214105264	18	31119937	G	A	-	-	-	-	-	-	39	0	0	155	24	15.48387097	0	0	NA	0	0	NA	2.89E-28	5	4	1	1	NA	NA	NA	unphased	1.168328446	1.168328446	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214105266	18	31178293	T	A	ASXL3	CCDS45847.1	r.?	-	-	intronic	35	0	0	110	26	23.63636364	0	0	NA	0	0	NA	1.18E-35	5	4	1	1	NA	NA	NA	unphased	1.783471074	0.891735537	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214105330	18	31805487	G	A	NOL4	CCDS11907.2	r.?	-	-	upstream	26	0	0	90	27	30	0	0	NA	0	0	NA	3.78E-40	5	4	1	1	NA	NA	NA	unphased	2.263636364	1.131818182	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214105464	18	32943075	G	A	ZNF396	CCDS11913.1	r.?	-	-	downstream	29	0	0	110	8	7.272727273	0	0	NA	0	0	NA	1.02E-07	5	4	1	1	NA	NA	NA	unphased	0.548760331	0.548760331	1	0.0475	0.9525	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214105968	18	36660274	G	A	-	-	-	-	-	-	41	0	0	120	60	50	0	0	NA	0	0	NA	6.23E-104	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	3.925634718	0.981408679	4	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214106353	18	39827861	C	A	-	-	-	-	-	-	34	0	0	117	25	21.36752137	0	0	NA	0	0	NA	3.94E-33	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	1.677621674	0.990223361	1.69418511	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214106488	18	41065426	T	A	-	-	-	-	-	-	27	0	0	99	7	7.070707071	0	0	NA	0	0	NA	7.78E-07	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	0.555140263	0.555140263	1	0.0375	0.9625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214106491	18	41083859	C	A	-	-	-	-	-	-	42	0	0	98	15	15.30612245	0	0	NA	0	0	NA	3.78E-18	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	1.201724914	1.201724914	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214106581	18	41686449	G	A	-	-	-	-	-	-	43	0	0	106	11	10.37735849	0	0	NA	0	0	NA	8.78E-12	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	0.814754375	0.814754375	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214106586	18	41742544	C	A	-	-	-	-	-	-	36	0	0	89	8	8.988764045	0	0	NA	0	0	NA	1.92E-08	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	0.705732084	0.705732084	1	0.005	0.995	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214106739	18	43194111	C	A	SLC14A2	CCDS11924.1	r.?	-	-	upstream	14	0	0	109	15	13.76146789	0	0	NA	0	0	NA	1.99E-17	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	1.080449922	1.080449922	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214107045	18	45028715	T	A	-	-	-	-	-	-	29	0	0	119	26	21.8487395	0	0	NA	0	0	NA	1.14E-34	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	1.715403406	1.01252419	1.69418511	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214107288	18	46628791	T	A	DYM	CCDS11937.1	r.?	-	-	intronic	28	0	0	111	11	9.90990991	0	0	NA	0	0	NA	1.46E-11	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	0.778053728	0.778053728	1	0.00625	0.99375	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214107434	18	47519949	C	A	MYO5B	CCDS42436.1	r.?	-	-	intronic	29	0	0	94	11	11.70212766	0	0	NA	0	0	NA	2.30E-12	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	0.918765572	0.918765572	1	0.00125	0.9975	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214107805	18	50204492	C	A	DCC	CCDS11952.1	r.?	-	-	intronic	41	0	0	89	23	25.84269663	0	0	NA	0	0	NA	1.02E-32	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	2.028979742	1.014489871	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214107890	18	50613319	G	A	DCC	CCDS11952.1	r.?	-	-	intronic	23	0	0	68	15	22.05882353	0	0	NA	0	0	NA	1.06E-20	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	1.73189767	1.022259999	1.69418511	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214107914	18	50722012	G	A	DCC	CCDS11952.1	r.?	-	-	intronic	40	0	0	116	11	9.482758621	0	0	NA	0	0	NA	2.37E-11	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	0.744516929	0.744516929	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214107966	18	51001444	C	A	DCC	CCDS11952.1	r.?	-	-	intronic	34	0	0	91	17	18.68131868	0	0	NA	0	0	NA	6.18E-22	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	1.466720664	1.466720664	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214108527	18	55241160	C	A	FECH	CCDS11964.1	r.?	-	-	intronic	36	0	0	96	15	15.625	0	0	NA	0	0	NA	2.73E-18	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	1.226760849	1.226760849	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214108569	18	55453114	C	A	-	-	-	-	-	-	29	0	0	121	9	7.438016529	0	0	NA	0	0	NA	1.33E-08	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	0.583978718	0.583978718	1	0.02125	0.97875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214109283	18	60364328	G	A	-	-	-	-	-	-	17	0	0	108	19	17.59259259	0	0	NA	0	0	NA	8.24E-24	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	1.381241845	1.381241845	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214109611	18	62640959	T	A	-	-	-	-	-	-	39	0	0	118	17	14.40677966	0	0	NA	0	0	NA	6.61E-20	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	1.131115088	1.131115088	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214109656	18	63005860	T	A	-	-	-	-	-	-	39	0	0	89	9	10.11235955	0	0	NA	0	0	NA	8.66E-10	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	0.793948595	0.793948595	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214109939	18	64985639	T	A	-	-	-	-	-	-	34	0	0	89	8	8.988764045	0	0	NA	0	0	NA	1.92E-08	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	0.705732084	0.705732084	1	0.00625	0.99375	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214109957	18	65095938	T	A	-	-	-	-	-	-	31	0	0	101	19	18.81188119	0	0	NA	0	0	NA	2.10E-24	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	1.476971478	0.871788726	1.69418511	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214110002	18	65356053	G	A	AC114689.1	ENST00000500778	r.?	-	-	intronic	26	0	0	96	8	8.333333333	0	0	NA	0	0	NA	3.50E-08	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	0.654272453	0.654272453	1	0.0075	0.9925	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214110028	18	65551086	G	A	AC114689.1	ENST00000500778	r.?	-	-	intronic	29	0	0	110	14	12.72727273	0	0	NA	0	0	NA	7.16E-16	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	0.999252474	0.999252474	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214110060	18	65778089	T	A	-	-	-	-	-	-	35	0	0	111	8	7.207207207	0	0	NA	0	0	NA	1.09E-07	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	0.565857257	0.565857257	1	0.02875	0.97125	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214110202	18	66581871	G	A	CCDC102B	CCDS11996.2	r.?	-	-	intronic	34	0	0	101	21	20.79207921	0	0	NA	0	0	NA	8.38E-28	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	1.63244216	0.96355596	1.69418511	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214110218	18	66674157	T	A	CCDC102B	CCDS11996.2	r.?	-	-	intronic	38	0	0	103	16	15.53398058	0	0	NA	0	0	NA	2.27E-19	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	1.21961467	1.21961467	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214110479	18	68413382	T	A	-	-	-	-	-	-	36	0	0	86	13	15.11627907	0	0	NA	0	0	NA	7.57E-16	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	1.186819798	1.186819798	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214110556	18	69017024	T	A	-	-	-	-	-	-	27	0	0	85	15	17.64705882	0	0	NA	0	0	NA	3.95E-19	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	1.385518136	1.385518136	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214110557	18	69017040	G	A	-	-	-	-	-	-	24	0	0	87	18	20.68965517	0	0	NA	0	0	NA	5.29E-24	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	1.624400573	0.958809379	1.69418511	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214110660	18	69661242	T	A	-	-	-	-	-	-	34	0	0	117	16	13.67521368	0	0	NA	0	0	NA	1.91E-18	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	1.073677872	1.073677872	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214110668	18	69705419	T	A	-	-	-	-	-	-	39	0	0	90	14	15.55555556	0	0	NA	0	0	NA	3.87E-17	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	1.221308579	1.221308579	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214110750	18	70361956	C	A	-	-	-	-	-	-	34	0	0	106	18	16.98113208	0	0	NA	0	0	NA	2.43E-22	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	1.333234432	1.333234432	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214111026	18	72279009	C	A	-	-	-	-	-	-	39	0	0	108	8	7.407407407	0	0	NA	0	0	NA	8.82E-08	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	0.581575514	0.581575514	1	0.03	0.97	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214111222	18	73707611	G	A	-	-	-	-	-	-	29	0	0	98	15	15.30612245	0	0	NA	0	0	NA	3.78E-18	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	1.201724914	1.201724914	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214111512	18	75260865	G	A	-	-	-	-	-	-	19	0	0	80	43	53.75	0	0	NA	0	0	NA	8.16E-77	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	4.220057322	1.05501433	4	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214111544	18	75484738	C	A	-	-	-	-	-	-	7	0	0	77	9	11.68831169	0	0	NA	0	0	NA	2.32E-10	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	0.917680843	0.917680843	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214111608	18	76024757	C	A	-	-	-	-	-	-	37	0	0	106	11	10.37735849	0	0	NA	0	0	NA	8.78E-12	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	0.814754375	0.814754375	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214111641	18	76155619	G	A	-	-	-	-	-	-	22	0	0	95	11	11.57894737	0	0	NA	0	0	NA	2.59E-12	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	0.909094356	0.909094356	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214111703	18	76515777	G	A	-	-	-	-	-	-	8	0	0	38	9	23.68421053	0	0	NA	0	0	NA	2.79E-13	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	1.859511182	0.929755591	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214112014	18	77519088	T	A	CTDP1	CCDS12017.1	r.?	-	-	downstream	27	0	0	113	20	17.69911504	0	0	NA	0	0	NA	4.85E-25	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	1.38960521	1.38960521	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214112325	19	4223539	G	A	ANKRD24	CCDS45925.1	r.?	-	-	intronic	8	0	0	35	26	74.28571429	0	0	NA	0	0	NA	1.01E-52	5	4	1	1	NA	NA	NA	unphased	5.605194805	1.401298701	4	0	0.98125	0.01875	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214112456	19	5921606	G	A	RANBP3	CCDS42478.1	r.?	-	-	intronic	10	0	0	49	15	30.6122449	0	0	NA	0	0	NA	4.10E-23	5	4	1	1	NA	NA	NA	unphased	2.309833024	1.154916512	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214112733	19	9046844	G	A	MUC16	ENST00000331986	r.21686c>u	c.21686C>T	p.S7229F	missense	30	0	0	66	10	15.15151515	253	0	0	225	32	14.22222222	1.60E-12	6	3	3	1	NA	NA	NA	unphased	1.29476584	1.29476584	1	0	0.99875	0.00125	2	1	6.37E-36	1	YES	1_1	somatic	custom.pulldown.HiSeq
1352322	PD9768b	1214112821	19	9613945	C	A	ZNF560	CCDS12214.1	r.?	-	-	upstream	17	0	0	86	13	15.11627907	0	0	NA	0	0	NA	7.57E-16	6	3	3	1	NA	NA	NA	unphased	1.291754757	1.291754757	1	0.00125	0.9975	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214113205	19	12807502	T	A	TNPO2	CCDS45991.1	r.?	-	-	downstream	7	0	0	77	23	29.87012987	0	0	NA	0	0	NA	2.24E-34	6	3	3	1	NA	NA	NA	unphased	2.552538371	0.850846124	3	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214113206	19	12807503	C	A	TNPO2	CCDS45991.1	r.?	-	-	downstream	7	0	0	79	23	29.11392405	0	0	NA	0	0	NA	4.43E-34	6	3	3	1	NA	NA	NA	unphased	2.487917146	0.829305715	3	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214113361	19	14206332	C	A	PRKACA	CCDS12304.1	r.?	-	-	intronic	8	0	0	67	8	11.94029851	0	0	NA	0	0	NA	1.96E-09	6	3	3	1	NA	NA	NA	unphased	1.020352782	1.020352782	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214113803	19	17345264	C	A	NR2F6	CCDS12352.1	r.?	-	-	intronic	20	0	0	69	22	31.88405797	0	0	NA	0	0	NA	1.12E-33	4.455748631	2	2	0.544251369	3	2	0.455748631	unphased	2.23226768	0.908996813	2.455748631	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214114697	19	23500044	G	A	-	-	-	-	-	-	11	0	0	87	10	11.49425287	0	0	NA	0	0	NA	2.75E-11	4.455748631	2	2	0.544251369	3	2	0.455748631	unphased	0.804735997	0.804735997	1	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214114841	19	24431772	G	A	-	-	-	-	-	-	44	0	0	61	23	37.70491803	0	0	NA	0	0	NA	3.73E-37	4.455748631	2	2	0.544251369	3	2	0.455748631	unphased	2.639797919	1.074946306	2.455748631	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214115508	19	28761625	G	A	-	-	-	-	-	-	29	0	0	90	30	33.33333333	0	0	NA	0	0	NA	4.69E-46	5	3	2	1	NA	NA	NA	unphased	2.515151515	0.838383838	3	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214115516	19	28813126	C	A	-	-	-	-	-	-	33	0	0	81	10	12.34567901	0	0	NA	0	0	NA	1.33E-11	5	3	2	1	NA	NA	NA	unphased	0.931537598	0.931537598	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214115755	19	31093036	G	A	-	-	-	-	-	-	26	0	0	86	8	9.302325581	0	0	NA	0	0	NA	1.47E-08	5	3	2	1	NA	NA	NA	unphased	0.701902748	0.701902748	1	0.00625	0.99375	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214115912	19	32551024	G	A	-	-	-	-	-	-	25	0	0	77	23	29.87012987	0	0	NA	0	0	NA	2.24E-34	5	3	2	1	NA	NA	NA	unphased	2.253837072	1.126918536	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214117180	19	44057189	G	A	XRCC1	CCDS12624.1	r.776c>u	c.656C>T	p.S219F	missense	21	0	0	69	7	10.14492754	0	0	NA	0	0	NA	6.43E-08	3	3	0	1	NA	NA	NA	unphased	0.562582345	0.562582345	1	0.0275	0.9725	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214117431	19	45085886	G	A	-	-	-	-	-	-	17	0	0	87	7	8.045977011	2	0	0	0	0	NA	3.22E-07	11.44607427	11	0	0.553925734	11	1	0.446074266	unphased	1.125755192	1.125755192	1	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214118674	19	54180782	C	A	MIR498	ENST00000385134	r.?	-	-	downstream	32	0	0	62	28	45.16129032	0	0	NA	0	0	NA	1.10E-47	3.161750156	3	0	0.838249844	3	1	0.161750156	unphased	2.577447285	0.908111487	2.838249844	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214119098	19	55464298	G	A	NLRP7	CCDS12912.1	r.?	-	-	intronic	18	0	0	69	11	15.94202899	0	0	NA	0	0	NA	6.82E-14	4.211727166	4	0	0.788272834	4	1	0.211727166	unphased	1.077231867	1.077231867	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214119106	19	55530713	G	A	GP6	CCDS42626.1	r.?	-	-	intronic	11	0	0	64	31	48.4375	0	0	NA	0	0	NA	7.05E-54	4.211727166	4	0	0.788272834	4	1	0.211727166	unphased	3.273009891	1.091003297	3	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214119293	19	57197346	G	A	-	-	-	-	-	-	13	0	0	80	12	15	0	0	NA	0	0	NA	1.07E-14	4.211727166	4	0	0.788272834	4	1	0.211727166	unphased	1.013577257	1.013577257	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214119549	2	20594	T	A	-	-	-	-	-	-	33	0	0	71	24	33.8028169	0	0	NA	0	0	NA	2.52E-37	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214119625	2	792038	G	A	-	-	-	-	-	-	46	0	0	73	11	15.06849315	0	0	NA	0	0	NA	1.31E-13	4	2	2	1	NA	NA	NA	unphased	0.98630137	0.98630137	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214119698	2	1179503	G	A	SNTG2	CCDS46220.1	r.?	-	-	intronic	30	0	0	73	13	17.80821918	0	0	NA	0	0	NA	7.97E-17	4	2	2	1	NA	NA	NA	unphased	1.165628892	1.165628892	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214120008	2	3976605	G	A	-	-	-	-	-	-	17	0	0	67	10	14.92537313	0	0	NA	0	0	NA	1.87E-12	4	2	2	1	NA	NA	NA	unphased	0.976933514	0.976933514	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214120223	2	6331287	G	A	-	-	-	-	-	-	11	0	0	77	16	20.77922078	0	0	NA	0	0	NA	1.56E-21	4	2	2	1	NA	NA	NA	unphased	1.360094451	1.360094451	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214120246	2	6528785	C	A	-	-	-	-	-	-	34	0	0	78	19	24.35897436	0	0	NA	0	0	NA	9.67E-27	4	2	2	1	NA	NA	NA	unphased	1.594405594	0.797202797	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214120520	2	9905967	C	A	-	-	-	-	-	-	21	0	0	109	54	49.5412844	0	0	NA	0	0	NA	2.09E-93	4	2	2	1	NA	NA	NA	unphased	3.242702252	1.621351126	2	0	0.7	0.3	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214120935	2	13859515	G	A	-	-	-	-	-	-	18	0	0	56	5	8.928571429	0	0	NA	0	0	NA	9.65E-06	4	2	2	1	NA	NA	NA	unphased	0.584415584	0.584415584	1	0.01875	0.98125	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214121280	2	18757706	C	A	NT5C1B	CCDS33149.1	r.?	-	-	intronic	47	0	0	86	30	34.88372093	0	0	NA	0	0	NA	9.12E-47	4	2	2	1	NA	NA	NA	unphased	2.283298097	1.141649049	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214121480	2	21497177	G	A	-	-	-	-	-	-	24	0	0	70	32	45.71428571	0	0	NA	0	0	NA	1.68E-54	4	2	2	1	NA	NA	NA	unphased	2.992207792	1.496103896	2	0	0.9725	0.0275	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214121533	2	22128175	C	A	-	-	-	-	-	-	44	0	0	76	19	25	0	0	NA	0	0	NA	5.56E-27	4	2	2	1	NA	NA	NA	unphased	1.636363636	0.818181818	2	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214121542	2	22259629	G	A	-	-	-	-	-	-	38	0	0	63	9	14.28571429	0	0	NA	0	0	NA	3.62E-11	4	2	2	1	NA	NA	NA	unphased	0.935064935	0.935064935	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214121563	2	22671267	T	A	-	-	-	-	-	-	29	0	0	76	9	11.84210526	0	0	NA	0	0	NA	2.06E-10	4	2	2	1	NA	NA	NA	unphased	0.775119617	0.775119617	1	0.00375	0.99625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214121976	2	26667935	C	A	C2orf39	CCDS1723.1	r.?	-	-	intronic	36	0	0	71	24	33.8028169	0	0	NA	0	0	NA	2.52E-37	4	2	2	1	NA	NA	NA	unphased	2.212548015	1.106274008	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214122199	2	28749089	C	A	PLB1	CCDS33168.1	r.?	-	-	intronic	25	0	0	63	17	26.98412698	0	0	NA	0	0	NA	6.22E-25	4	2	2	1	NA	NA	NA	unphased	1.766233766	0.883116883	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214122555	2	33913222	T	A	-	-	-	-	-	-	30	0	0	56	6	10.71428571	0	0	NA	0	0	NA	4.09E-07	3	2	1	1	NA	NA	NA	unphased	0.594155844	0.594155844	1	0.01375	0.98625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214122636	2	34943485	G	A	-	-	-	-	-	-	21	0	0	68	16	23.52941176	0	0	NA	0	0	NA	1.75E-22	3	2	1	1	NA	NA	NA	unphased	1.304812834	1.304812834	1	0	0.99625	0.00375	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214122983	2	38815136	C	A	HNRPLL	CCDS46261.1	r.?	-	-	intronic	23	0	0	59	5	8.474576271	0	0	NA	0	0	NA	1.25E-05	3	2	1	1	NA	NA	NA	unphased	0.469953775	0.469953775	1	0.06125	0.93875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214123082	2	40025473	G	A	-	-	-	-	-	-	36	0	0	64	30	46.875	0	0	NA	0	0	NA	1.28E-51	3	2	1	1	NA	NA	NA	unphased	2.599431818	1.299715909	2	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214123095	2	40338814	T	A	SLC8A1	CCDS1806.1	r.?	-	-	downstream	30	0	0	75	6	8	0	0	NA	0	0	NA	2.34E-06	3	2	1	1	NA	NA	NA	unphased	0.443636364	0.443636364	1	0.1225	0.8775	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214123660	2	48596446	G	A	FOXN2	CCDS1838.1	r.?	-	-	intronic	22	0	0	68	23	33.82352941	0	0	NA	0	0	NA	7.70E-36	3	2	1	1	NA	NA	NA	unphased	1.875668449	0.937834225	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214123792	2	51608588	G	A	-	-	-	-	-	-	27	0	0	51	7	13.7254902	0	0	NA	0	0	NA	7.46E-09	3	2	1	1	NA	NA	NA	unphased	0.76114082	0.76114082	1	0.005	0.99375	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214123804	2	51977747	T	A	-	-	-	-	-	-	24	0	0	35	17	48.57142857	0	0	NA	0	0	NA	3.18E-30	3	2	1	1	NA	NA	NA	unphased	2.693506494	1.346753247	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214123830	2	52441711	C	A	-	-	-	-	-	-	30	0	0	65	20	30.76923077	0	0	NA	0	0	NA	2.18E-30	3	2	1	1	NA	NA	NA	unphased	1.706293706	0.853146853	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214123872	2	53067993	G	A	-	-	-	-	-	-	36	0	0	79	19	24.05063291	0	0	NA	0	0	NA	1.27E-26	3	2	1	1	NA	NA	NA	unphased	1.333716916	1.333716916	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214123996	2	55296907	G	A	RTN4	ENST00000427710	r.?	-	-	intronic	31	0	0	76	11	14.47368421	0	0	NA	0	0	NA	2.08E-13	3	2	1	1	NA	NA	NA	unphased	0.802631579	0.802631579	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214124852	2	68567526	G	A	-	-	-	-	-	-	22	0	0	72	22	30.55555556	0	0	NA	0	0	NA	3.36E-33	3	2	1	1	NA	NA	NA	unphased	1.694444444	0.847222222	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214124944	2	70254065	C	A	-	-	-	-	-	-	32	0	0	56	11	19.64285714	0	0	NA	0	0	NA	5.91E-15	3	2	1	1	NA	NA	NA	unphased	1.089285714	1.089285714	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214125250	2	75195817	G	A	POLE4	CCDS1957.1	r.?	-	-	intronic	42	0	0	62	7	11.29032258	0	0	NA	0	0	NA	3.02E-08	3	2	1	1	NA	NA	NA	unphased	0.626099707	0.626099707	1	0.0125	0.9875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214125348	2	76835950	G	A	-	-	-	-	-	-	40	0	0	61	18	29.50819672	0	0	NA	0	0	NA	4.08E-27	3	2	1	1	NA	NA	NA	unphased	1.636363636	0.818181818	2	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214125366	2	77090489	G	A	LRRTM4	CCDS46346.1	r.?	-	-	intronic	32	0	0	68	12	17.64705882	0	0	NA	0	0	NA	1.37E-15	3	2	1	1	NA	NA	NA	unphased	0.978609626	0.978609626	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214125466	2	79249371	T	A	REG3G	CCDS1962.1	r.?	-	-	upstream	26	0	0	59	19	32.20338983	0	0	NA	0	0	NA	2.20E-29	3	2	1	1	NA	NA	NA	unphased	1.785824345	0.892912173	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214125533	2	80237768	T	A	CTNNA2	CCDS42703.2	r.?	-	-	intronic	38	0	0	60	17	28.33333333	0	0	NA	0	0	NA	2.41E-25	3	2	1	1	NA	NA	NA	unphased	1.571212121	0.785606061	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214125545	2	80458853	G	A	CTNNA2	CCDS42703.2	r.?	-	-	intronic	40	0	0	61	7	11.47540984	0	0	NA	0	0	NA	2.69E-08	3	2	1	1	NA	NA	NA	unphased	0.636363636	0.636363636	1	0.00875	0.99125	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214125609	2	81652033	C	A	-	-	-	-	-	-	27	0	0	60	9	15	0	0	NA	0	0	NA	2.29E-11	3	2	1	1	NA	NA	NA	unphased	0.831818182	0.831818182	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214125694	2	83215593	C	A	-	-	-	-	-	-	38	0	0	64	6	9.375	0	0	NA	0	0	NA	9.14E-07	3	2	1	1	NA	NA	NA	unphased	0.519886364	0.519886364	1	0.045	0.955	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214125798	2	85648961	G	A	SH2D6	ENST00000389938	r.?	-	-	intronic	28	0	0	59	9	15.25423729	0	0	NA	0	0	NA	1.96E-11	3	2	1	1	NA	NA	NA	unphased	0.845916795	0.845916795	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214126179	2	89507163	G	A	-	-	-	-	-	-	21	0	0	45	8	17.77777778	0	0	NA	0	0	NA	7.14E-11	3	2	1	1	NA	NA	NA	unphased	0.985858586	0.985858586	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214126191	2	89832171	G	A	-	-	-	-	-	-	71	0	0	117	17	14.52991453	0	0	NA	0	0	NA	5.69E-20	3	2	1	1	NA	NA	NA	unphased	0.805749806	0.805749806	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214126451	2	90234002	C	A	-	-	-	-	-	-	39	0	0	61	12	19.67213115	0	0	NA	0	0	NA	3.39E-16	3	2	1	1	NA	NA	NA	unphased	1.090909091	1.090909091	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214129032	2	99272948	T	A	MGAT4A	CCDS2036.1	r.?	-	-	intronic	20	0	0	83	33	39.75903614	0	0	NA	0	0	NA	1.36E-53	3	2	1	1	NA	NA	NA	unphased	2.204819277	1.102409639	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214129056	2	99645776	G	A	TSGA10	CCDS2037.1	r.?	-	-	intronic	32	0	0	54	8	14.81481481	0	0	NA	0	0	NA	3.31E-10	3	2	1	1	NA	NA	NA	unphased	0.821548822	0.821548822	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214129098	2	100152058	G	A	-	-	-	-	-	-	21	0	0	77	12	15.58441558	0	0	NA	0	0	NA	6.64E-15	3	2	1	1	NA	NA	NA	unphased	0.864226682	0.864226682	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214129124	2	100508737	G	A	AFF3	CCDS42723.1	r.?	-	-	intronic	25	0	0	69	6	8.695652174	0	0	NA	0	0	NA	1.43E-06	3	2	1	1	NA	NA	NA	unphased	0.482213439	0.482213439	1	0.07875	0.92125	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214129306	2	103637285	G	A	-	-	-	-	-	-	37	0	0	61	14	22.95081967	0	0	NA	0	0	NA	1.10E-19	3	2	1	1	NA	NA	NA	unphased	1.272727273	1.272727273	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214129657	2	109161305	T	A	LIMS1	ENST00000428064	r.?	-	-	intronic	26	0	0	67	23	34.32835821	0	0	NA	0	0	NA	5.12E-36	3	2	1	1	NA	NA	NA	unphased	1.903663501	0.95183175	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214130100	2	114344148	G	A	MIR1302-3	ENST00000408128	r.?	-	-	upstream	7	0	0	52	10	19.23076923	0	0	NA	0	0	NA	1.28E-13	3	2	1	1	NA	NA	NA	unphased	1.066433566	1.066433566	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214130151	2	114799735	C	A	-	-	-	-	-	-	36	0	0	72	8	11.11111111	0	0	NA	0	0	NA	3.52E-09	3	2	1	1	NA	NA	NA	unphased	0.616161616	0.616161616	1	0.01875	0.98125	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214130211	2	116131211	G	A	DPP10	CCDS46400.1	r.?	-	-	intronic	34	0	0	66	14	21.21212121	0	0	NA	0	0	NA	3.71E-19	3	2	1	1	NA	NA	NA	unphased	1.17630854	1.17630854	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214130293	2	117253102	C	A	-	-	-	-	-	-	25	0	0	55	8	14.54545455	0	0	NA	0	0	NA	3.86E-10	3	2	1	1	NA	NA	NA	unphased	0.80661157	0.80661157	1	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214130349	2	118050180	G	A	-	-	-	-	-	-	37	0	0	69	12	17.39130435	0	0	NA	0	0	NA	1.65E-15	3	2	1	1	NA	NA	NA	unphased	0.964426877	0.964426877	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214130437	2	119268060	C	A	-	-	-	-	-	-	35	0	0	73	26	35.61643836	0	0	NA	0	0	NA	5.09E-41	3	2	1	1	NA	NA	NA	unphased	1.9750934	0.9875467	2	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214130750	2	123951250	G	A	-	-	-	-	-	-	43	0	0	74	15	20.27027027	0	0	NA	0	0	NA	4.22E-20	3	2	1	1	NA	NA	NA	unphased	1.124078624	1.124078624	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214130785	2	124321172	G	A	-	-	-	-	-	-	27	0	0	55	18	32.72727273	0	0	NA	0	0	NA	4.61E-28	3	2	1	1	NA	NA	NA	unphased	1.814876033	0.907438017	2	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214130789	2	124418413	G	A	-	-	-	-	-	-	40	0	0	50	20	40	0	0	NA	0	0	NA	3.90E-33	3	2	1	1	NA	NA	NA	unphased	2.218181818	1.109090909	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214130901	2	125885728	G	A	-	-	-	-	-	-	23	0	0	50	7	14	0	0	NA	0	0	NA	6.46E-09	3	2	1	1	NA	NA	NA	unphased	0.776363636	0.776363636	1	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214130999	2	127704938	G	A	-	-	-	-	-	-	27	0	0	49	13	26.53061224	0	0	NA	0	0	NA	2.71E-19	3	2	1	1	NA	NA	NA	unphased	1.471243043	1.471243043	1	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214131024	2	128023557	T	A	ERCC3	CCDS2144.1	r.?	-	-	intronic	29	0	0	66	24	36.36363636	0	0	NA	0	0	NA	3.04E-38	3	2	1	1	NA	NA	NA	unphased	2.016528926	1.008264463	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214131054	2	128470010	G	A	WDR33	CCDS2150.1	r.?	-	-	intronic	29	0	0	53	16	30.18867925	0	0	NA	0	0	NA	1.90E-24	3	2	1	1	NA	NA	NA	unphased	1.674099485	0.837049743	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214131128	2	129160229	G	A	-	-	-	-	-	-	22	0	0	79	32	40.50632911	0	0	NA	0	0	NA	2.44E-52	3	2	1	1	NA	NA	NA	unphased	2.246260069	1.123130035	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214131181	2	130006100	C	A	-	-	-	-	-	-	34	0	0	77	36	46.75324675	0	0	NA	0	0	NA	1.39E-61	3	2	1	1	NA	NA	NA	unphased	2.592680047	1.296340024	2	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214131331	2	132099387	T	A	PLEKHB2	ENST00000404460	r.?	-	-	intronic	29	0	0	71	24	33.8028169	0	0	NA	0	0	NA	2.52E-37	3	2	1	1	NA	NA	NA	unphased	1.874519846	0.937259923	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214132591	2	133553258	G	A	NCKAP5	CCDS46418.1	r.?	-	-	intronic	11	0	0	58	7	12.06896552	0	0	NA	0	0	NA	1.88E-08	3	2	1	1	NA	NA	NA	unphased	0.669278997	0.669278997	1	0.01125	0.98875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214132719	2	135377811	C	A	TMEM163	CCDS2172.1	r.?	-	-	intronic	18	0	0	61	15	24.59016393	0	0	NA	0	0	NA	1.73E-21	3	2	1	1	NA	NA	NA	unphased	1.363636364	1.363636364	1	0	0.99625	0.00375	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214132861	2	137782534	C	A	THSD7B	ENST00000409968	r.?	-	-	intronic	38	0	0	57	6	10.52631579	2	0	0	2	2	100	4.56E-07	3	2	1	1	NA	NA	NA	unphased	0.583732057	0.583732057	1	0.01875	0.98125	0	2	1	2.50E-05	1	NA	NA	NA	NA
1352322	PD9768b	1214132880	2	138106139	G	A	THSD7B	ENST00000409968	r.?	-	-	intronic	21	0	0	55	14	25.45454545	0	0	NA	0	0	NA	2.19E-20	3	2	1	1	NA	NA	NA	unphased	1.411570248	1.411570248	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214132904	2	138530692	G	A	-	-	-	-	-	-	32	0	0	59	18	30.50847458	0	0	NA	0	0	NA	2.03E-27	3	2	1	1	NA	NA	NA	unphased	1.69183359	0.845916795	2	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214132974	2	139903683	T	A	-	-	-	-	-	-	31	0	0	44	6	13.63636364	0	0	NA	0	0	NA	9.37E-08	3	2	1	1	NA	NA	NA	unphased	0.756198347	0.756198347	1	0.005	0.995	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214132983	2	140050818	T	A	-	-	-	-	-	-	42	0	0	60	13	21.66666667	0	0	NA	0	0	NA	5.07E-18	3	2	1	1	NA	NA	NA	unphased	1.201515152	1.201515152	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214133149	2	142418399	G	A	LRP1B	CCDS2182.1	r.?	-	-	intronic	10	0	0	56	13	23.21428571	0	0	NA	0	0	NA	1.89E-18	3	2	1	1	NA	NA	NA	unphased	1.287337662	1.287337662	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214133228	2	144000921	T	A	ARHGAP15	CCDS2184.1	r.?	-	-	intronic	27	0	0	66	9	13.63636364	0	0	NA	0	0	NA	5.59E-11	3	2	1	1	NA	NA	NA	unphased	0.756198347	0.756198347	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214133399	2	147146616	T	A	-	-	-	-	-	-	24	0	0	72	16	22.22222222	0	0	NA	0	0	NA	4.82E-22	3	2	1	1	NA	NA	NA	unphased	1.232323232	1.232323232	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214133466	2	148532493	G	A	-	-	-	-	-	-	27	0	0	73	15	20.54794521	0	0	NA	0	0	NA	3.38E-20	3	2	1	1	NA	NA	NA	unphased	1.139476961	1.139476961	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214133803	2	153729176	G	A	-	-	-	-	-	-	27	0	0	75	20	26.66666667	0	0	NA	0	0	NA	5.89E-29	4	2	2	1	NA	NA	NA	unphased	1.745454545	0.872727273	2	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214133873	2	154845542	G	A	GALNT13	CCDS2199.1	r.?	-	-	intronic	38	0	0	63	23	36.50793651	0	0	NA	0	0	NA	9.25E-37	3	2	1	1	NA	NA	NA	unphased	2.024531025	1.012265512	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214133906	2	155289459	G	A	GALNT13	CCDS2199.1	r.?	-	-	intronic	27	0	0	48	18	37.5	0	0	NA	0	0	NA	2.42E-29	3	2	1	1	NA	NA	NA	unphased	2.079545455	1.039772727	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214133935	2	155719442	T	A	KCNJ3	CCDS2200.1	r.?	-	-	downstream	37	0	0	72	21	29.16666667	0	0	NA	0	0	NA	2.89E-31	3	2	1	1	NA	NA	NA	unphased	1.617424242	0.808712121	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214133944	2	155976122	T	A	-	-	-	-	-	-	36	0	0	56	10	17.85714286	0	0	NA	0	0	NA	2.82E-13	3	2	1	1	NA	NA	NA	unphased	0.99025974	0.99025974	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214133976	2	156606417	C	A	-	-	-	-	-	-	26	0	0	58	6	10.34482759	0	0	NA	0	0	NA	5.06E-07	3	2	1	1	NA	NA	NA	unphased	0.573667712	0.573667712	1	0.01875	0.98125	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214134401	2	163627290	T	A	KCNH7	CCDS2219.1	r.?	-	-	intronic	33	0	0	89	13	14.60674157	0	0	NA	0	0	NA	1.21E-15	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214134404	2	163627371	C	A	KCNH7	CCDS2219.1	r.?	-	-	intronic	27	0	0	94	14	14.89361702	0	0	NA	0	0	NA	7.32E-17	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214134418	2	163872918	G	A	-	-	-	-	-	-	43	0	0	59	22	37.28813559	0	0	NA	0	0	NA	1.79E-35	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214134468	2	164734083	T	A	-	-	-	-	-	-	26	0	0	78	27	34.61538462	0	0	NA	0	0	NA	3.90E-42	3	2	1	1	NA	NA	NA	unphased	1.91958042	0.95979021	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214134469	2	164734084	C	A	-	-	-	-	-	-	26	0	0	79	27	34.17721519	0	0	NA	0	0	NA	5.90E-42	3	2	1	1	NA	NA	NA	unphased	1.895281933	0.947640967	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214135229	2	174187316	G	A	-	-	-	-	-	-	28	0	0	82	7	8.536585366	0	0	NA	0	0	NA	2.14E-07	4	2	2	1	NA	NA	NA	unphased	0.558758315	0.558758315	1	0.03	0.97	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214135756	2	180932317	T	A	-	-	-	-	-	-	22	0	0	65	19	29.23076923	0	0	NA	0	0	NA	1.89E-28	4	2	2	1	NA	NA	NA	unphased	1.913286713	0.956643357	2	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214135807	2	181609863	C	A	-	-	-	-	-	-	36	0	0	82	22	26.82926829	0	0	NA	0	0	NA	9.09E-32	4	2	2	1	NA	NA	NA	unphased	1.756097561	0.87804878	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214136122	2	186218157	G	A	-	-	-	-	-	-	11	0	0	58	15	25.86206897	0	0	NA	0	0	NA	7.42E-22	4	2	2	1	NA	NA	NA	unphased	1.692789969	0.846394984	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214136216	2	187455772	G	A	ITGAV	CCDS2292.1	r.?	-	-	intronic	30	0	0	59	15	25.42372881	0	0	NA	0	0	NA	9.90E-22	4	2	2	1	NA	NA	NA	unphased	1.664098613	0.832049307	2	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214136294	2	188366555	C	A	TFPI	CCDS2294.1	r.?	-	-	intronic	33	0	0	63	14	22.22222222	0	0	NA	0	0	NA	1.81E-19	4	2	2	1	NA	NA	NA	unphased	1.454545455	1.454545455	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214136743	2	194629808	G	A	-	-	-	-	-	-	38	0	0	58	17	29.31034483	0	0	NA	0	0	NA	1.24E-25	4	2	2	1	NA	NA	NA	unphased	1.918495298	0.959247649	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214136777	2	195206570	C	A	-	-	-	-	-	-	27	0	0	76	19	25	0	0	NA	0	0	NA	5.56E-27	4	2	2	1	NA	NA	NA	unphased	1.636363636	0.818181818	2	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214136934	2	197094345	G	A	HECW2	CCDS33354.1	r.?	-	-	intronic	25	0	0	86	20	23.25581395	0	0	NA	0	0	NA	1.27E-27	4	2	2	1	NA	NA	NA	unphased	1.522198732	0.761099366	2	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214137123	2	198865521	T	A	PLCL1	ENST00000428675	r.?	-	-	intronic	38	0	0	93	23	24.7311828	0	0	NA	0	0	NA	3.18E-32	4	2	2	1	NA	NA	NA	unphased	1.618768328	0.809384164	2	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214137857	2	207234283	C	A	-	-	-	-	-	-	37	0	0	70	21	30	0	0	NA	0	0	NA	1.45E-31	4	2	2	1	NA	NA	NA	unphased	1.963636364	0.981818182	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214138014	2	208880646	G	A	PLEKHM3	CCDS42808.1	r.?	-	-	intronic	16	0	0	76	20	26.31578947	0	0	NA	0	0	NA	7.96E-29	4	2	2	1	NA	NA	NA	unphased	1.722488038	0.861244019	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214138447	2	215000217	G	A	SPAG16	CCDS2396.1	r.?	-	-	intronic	49	0	0	69	25	36.23188406	0	0	NA	0	0	NA	1.00E-39	2.085536502	2	0	0.914463498	2	1	0.085536502	unphased	1.677895307	0.876431078	1.914463498	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214138452	2	215200683	G	A	SPAG16	CCDS2396.1	r.?	-	-	intronic	17	0	0	37	5	13.51351351	0	0	NA	0	0	NA	1.19E-06	2.085536502	2	0	0.914463498	2	1	0.085536502	unphased	0.625809601	0.625809601	1	0.0125	0.9875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214138533	2	216409438	G	A	-	-	-	-	-	-	31	0	0	46	6	13.04347826	0	0	NA	0	0	NA	1.23E-07	2.085536502	2	0	0.914463498	2	1	0.085536502	unphased	0.604042311	0.604042311	1	0.015	0.985	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214138855	2	222648379	C	A	-	-	-	-	-	-	23	0	0	42	19	45.23809524	0	0	NA	0	0	NA	7.64E-33	2.085536502	2	0	0.914463498	2	1	0.085536502	unphased	2.094972141	1.04748607	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214140044	20	1645048	G	A	-	-	-	-	-	-	38	0	0	66	17	25.75757576	0	0	NA	0	0	NA	1.52E-24	4	2	2	1	NA	NA	NA	unphased	1.685950413	0.842975207	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214140399	20	5789169	G	A	C20orf196	CCDS13091.1	r.?	-	-	intronic	27	0	0	78	7	8.974358974	0	0	NA	0	0	NA	1.51E-07	4	2	2	1	NA	NA	NA	unphased	0.587412587	0.587412587	1	0.015	0.985	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214140816	20	11775360	G	A	-	-	-	-	-	-	37	0	0	90	29	32.22222222	0	0	NA	0	0	NA	4.59E-44	3.731603834	2	1	0.268396166	2	2	0.731603834	unphased	2.0226077	1.01130385	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214140846	20	12279938	G	A	-	-	-	-	-	-	10	0	0	60	11	18.33333333	0	0	NA	2	0	0	1.34E-14	3.731603834	2	1	0.268396166	2	2	0.731603834	unphased	1.150794036	1.150794036	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214140895	20	12827141	C	A	-	-	-	-	-	-	25	0	0	61	18	29.50819672	0	0	NA	0	0	NA	4.08E-27	3.731603834	2	1	0.268396166	2	2	0.731603834	unphased	1.852246735	0.926123367	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214141546	20	21404821	G	A	-	-	-	-	-	-	27	0	0	90	31	34.44444444	0	0	NA	0	0	NA	4.56E-48	3.731603834	2	1	0.268396166	2	2	0.731603834	unphased	2.162097886	1.081048943	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214141571	20	21731591	G	A	-	-	-	-	-	-	39	0	0	71	7	9.85915493	0	0	NA	0	0	NA	7.85E-08	3.731603834	2	1	0.268396166	2	2	0.731603834	unphased	0.618864911	0.845901678	0.731603834	0.00375	0.99625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214141682	20	23492614	T	A	-	-	-	-	-	-	31	0	0	62	15	24.19354839	0	0	NA	0	0	NA	2.28E-21	3.731603834	2	1	0.268396166	2	2	0.731603834	unphased	1.518643156	1.518643156	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214141823	20	25595941	C	A	NANP	CCDS13173.1	r.1594g>u	c.?	p.?	3'UTR variant	36	0	0	74	14	18.91891892	0	0	NA	0	0	NA	2.10E-18	4	2	2	1	NA	NA	NA	unphased	1.238329238	1.238329238	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214142644	20	26104026	G	A	-	-	-	-	-	-	51	0	0	92	23	25	0	0	NA	0	0	NA	2.41E-32	4	2	2	1	NA	NA	NA	unphased	1.636363636	0.818181818	2	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214146060	20	37808781	G	A	-	-	-	-	-	-	40	0	0	80	32	40	0	0	NA	0	0	NA	4.04E-52	4	2	2	1	NA	NA	NA	unphased	2.618181818	1.309090909	2	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214146143	20	39129917	G	A	-	-	-	-	-	-	29	0	0	68	14	20.58823529	0	0	NA	0	0	NA	5.84E-19	4	2	2	1	NA	NA	NA	unphased	1.347593583	1.347593583	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214146173	20	39678494	G	A	TOP1	CCDS13312.1	r.?	-	-	intronic	27	0	0	80	26	32.5	0	0	NA	0	0	NA	8.83E-40	4	2	2	1	NA	NA	NA	unphased	2.127272727	1.063636364	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214146208	20	40371687	G	A	-	-	-	-	-	-	37	0	0	72	19	26.38888889	0	0	NA	0	0	NA	1.75E-27	4	2	2	1	NA	NA	NA	unphased	1.727272727	0.863636364	2	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214146221	20	40444472	C	A	-	-	-	-	-	-	32	0	0	52	19	36.53846154	0	0	NA	0	0	NA	1.24E-30	4	2	2	1	NA	NA	NA	unphased	2.391608392	1.195804196	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214146296	20	41647655	C	A	PTPRT	CCDS42874.1	r.?	-	-	intronic	36	0	0	82	23	28.04878049	0	0	NA	0	0	NA	1.19E-33	4	2	2	1	NA	NA	NA	unphased	1.835920177	0.917960089	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214146624	20	45410733	T	A	-	-	-	-	-	-	28	0	0	65	16	24.61538462	0	0	NA	0	0	NA	7.85E-23	4	2	2	1	NA	NA	NA	unphased	1.611188811	0.805594406	2	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214147080	20	48735798	G	A	TMEM189-UBE2V1	CCDS13424.1	r.?	-	-	intronic	27	0	0	77	24	31.16883117	0	0	NA	0	0	NA	2.53E-36	4	2	2	1	NA	NA	NA	unphased	2.040141677	1.020070838	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214147439	20	52153607	C	A	-	-	-	-	-	-	28	0	0	77	22	28.57142857	2	0	0	0	0	NA	1.86E-32	4	2	2	1	NA	NA	NA	unphased	1.87012987	0.935064935	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214147597	20	53407485	G	A	-	-	-	-	-	-	35	0	0	68	12	17.64705882	0	0	NA	0	0	NA	1.37E-15	4	2	2	1	NA	NA	NA	unphased	1.155080214	1.155080214	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214147619	20	53591281	C	A	-	-	-	-	-	-	32	0	0	68	21	30.88235294	0	0	NA	0	0	NA	7.15E-32	4	2	2	1	NA	NA	NA	unphased	2.021390374	1.010695187	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214147632	20	53715454	C	A	-	-	-	-	-	-	47	0	0	87	6	6.896551724	0	0	NA	0	0	NA	5.58E-06	4	2	2	1	NA	NA	NA	unphased	0.451410658	0.451410658	1	0.095	0.905	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214147779	20	55538763	G	A	-	-	-	-	-	-	23	0	0	67	19	28.35820896	0	0	NA	0	0	NA	3.67E-28	4	2	2	1	NA	NA	NA	unphased	1.856173677	0.928086839	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214147780	20	55538764	C	A	-	-	-	-	-	-	24	0	0	65	18	27.69230769	0	0	NA	0	0	NA	1.52E-26	4	2	2	1	NA	NA	NA	unphased	1.812587413	0.906293706	2	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214147856	20	56561593	T	A	-	-	-	-	-	-	33	0	0	91	26	28.57142857	0	0	NA	0	0	NA	4.43E-38	4	2	2	1	NA	NA	NA	unphased	1.87012987	0.935064935	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214147869	20	56769808	G	A	-	-	-	-	-	-	31	0	0	83	23	27.71084337	0	0	NA	0	0	NA	1.64E-33	4	2	2	1	NA	NA	NA	unphased	1.813800657	0.906900329	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214147935	20	57739350	T	A	-	-	-	-	-	-	31	0	0	82	28	34.14634146	0	0	NA	0	0	NA	1.94E-43	4	2	2	1	NA	NA	NA	unphased	2.235033259	1.11751663	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214147937	20	57764922	G	A	ZNF831	CCDS42894.1	r.?	-	-	upstream	18	0	0	88	25	28.40909091	0	0	NA	0	0	NA	1.33E-36	4	2	2	1	NA	NA	NA	unphased	1.859504132	0.929752066	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214148061	20	59446594	C	A	-	-	-	-	-	-	31	0	0	67	13	19.40298507	0	0	NA	0	0	NA	2.41E-17	4	2	2	1	NA	NA	NA	unphased	1.270013569	1.270013569	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214148241	20	61737905	G	A	-	-	-	-	-	-	7	0	0	83	29	34.93975904	0	0	NA	0	0	NA	2.77E-45	4	2	2	1	NA	NA	NA	unphased	2.286966046	1.143483023	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214149690	21	9862315	C	A	-	-	-	-	-	-	128	0	0	199	15	7.537688442	0	0	NA	0	0	NA	1.74E-13	1.765333865	1	0	0.234666135	2	0	0.765333865	unphased	0.3249338	0.3249338	1	1	0	0	1	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214149969	21	9909451	G	A	ENSG00000227328	ENST00000416067	r.?	-	-	intronic	7	0	0	114	13	11.40350877	1	0	0	0	0	NA	3.31E-14	1.765333865	1	0	0.234666135	2	0	0.765333865	unphased	0.491581135	0.642309399	0.765333865	0.02125	0.97875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214149995	21	9914132	G	A	ENSG00000227328	ENST00000416067	r.?	-	-	intronic	19	0	0	235	33	14.04255319	0	0	NA	0	0	NA	8.35E-37	1.765333865	1	0	0.234666135	2	0	0.765333865	unphased	0.605344756	0.790955142	0.765333865	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214153952	21	14622107	G	A	-	-	-	-	-	-	28	0	0	56	25	44.64285714	0	0	NA	0	0	NA	1.43E-42	1.765333865	1	0	0.234666135	2	0	0.765333865	unphased	1.924459112	1.090138897	1.765333865	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214154005	21	14852624	G	A	-	-	-	-	-	-	29	0	0	51	17	33.33333333	0	0	NA	0	0	NA	9.59E-27	1.765333865	1	0	0.234666135	2	0	0.765333865	unphased	1.43692947	1.43692947	1	0	0.995	0.005	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214154346	21	17782452	C	A	-	-	-	-	-	-	25	0	0	22	9	40.90909091	0	0	NA	0	0	NA	9.16E-16	1.765333865	1	0	0.234666135	2	0	0.765333865	unphased	1.76350435	0.998963643	1.765333865	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214154465	21	19951490	G	A	-	-	-	-	-	-	39	0	0	61	20	32.78688525	0	0	NA	0	0	NA	4.89E-31	1.765333865	1	0	0.234666135	2	0	0.765333865	unphased	1.413373249	1.413373249	1	0	0.99625	0.00375	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214154643	21	23720809	C	A	-	-	-	-	-	-	26	0	0	55	24	43.63636364	0	0	NA	0	0	NA	1.28E-40	1.765333865	1	0	0.234666135	2	0	0.765333865	unphased	1.881071306	1.06556122	1.765333865	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214154716	21	25023597	G	A	-	-	-	-	-	-	10	0	0	30	10	33.33333333	0	0	NA	0	0	NA	2.68E-16	1.765333865	1	0	0.234666135	2	0	0.765333865	unphased	1.43692947	1.43692947	1	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214154757	21	25588633	C	A	-	-	-	-	-	-	36	0	0	65	8	12.30769231	0	0	NA	0	0	NA	1.53E-09	1.765333865	1	0	0.234666135	2	0	0.765333865	unphased	0.530558574	0.693238073	0.765333865	0.0075	0.9925	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214154840	21	27378652	T	A	APP	CCDS33523.1	r.?	-	-	intronic	30	0	0	52	28	53.84615385	0	0	NA	0	0	NA	1.41E-50	1.765333865	1	0	0.234666135	2	0	0.765333865	unphased	2.321193759	1.314875223	1.765333865	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214158207	22	34620839	G	A	-	-	-	-	-	-	30	0	0	54	18	33.33333333	0	0	NA	0	0	NA	3.12E-28	2.072240472	2	0	0.927759528	2	1	0.072240472	unphased	1.539231673	0.798456265	1.927759528	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214158306	22	36447097	T	A	-	-	-	-	-	-	27	0	0	49	15	30.6122449	0	0	NA	0	0	NA	4.10E-23	2.072240472	2	0	0.927759528	2	1	0.072240472	unphased	1.413580107	1.413580107	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214158964	22	48237736	G	A	-	-	-	-	-	-	19	0	0	52	10	19.23076923	0	0	NA	0	0	NA	1.28E-13	2.072240472	2	0	0.927759528	2	1	0.072240472	unphased	0.888018273	0.888018273	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214159422	3	2450107	G	A	CNTN4	CCDS43041.1	r.?	-	-	intronic	33	0	0	83	8	9.638554217	0	0	NA	0	0	NA	1.10E-08	3.412637193	3	0	0.587362807	4	0	0.412637193	unphased	0.574273902	1.391716289	0.412637193	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214159433	3	2549707	T	A	CNTN4	CCDS43041.1	r.?	-	-	intronic	29	0	0	79	49	62.02531646	58	0	0	156	80	51.28205128	8.50E-92	3.412637193	3	0	0.587362807	4	0	0.412637193	unphased	3.695525255	1.082894268	3.412637193	0	1	0	2	1	3.14E-139	1	YES	1_1	somatic	custom.pulldown.HiSeq
1352322	PD9768b	1214159765	3	5952669	T	A	-	-	-	-	-	-	36	0	0	69	11	15.94202899	0	0	NA	0	0	NA	6.82E-14	3.412637193	3	0	0.587362807	4	0	0.412637193	unphased	0.949840712	0.949840712	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214159856	3	7205590	G	A	GRM7	CCDS43042.1	r.?	-	-	intronic	30	0	0	84	13	15.47619048	0	0	NA	0	0	NA	5.49E-16	3.412637193	3	0	0.587362807	4	0	0.412637193	unphased	0.922085626	0.922085626	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214159865	3	7323939	T	A	GRM7	CCDS43042.1	r.?	-	-	intronic	27	0	0	75	43	57.33333333	0	0	NA	0	0	NA	1.52E-78	3.412637193	3	0	0.587362807	4	0	0.412637193	unphased	3.415972596	1.000977368	3.412637193	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214160062	3	9194554	G	A	SRGAP3	CCDS33689.1	r.?	-	-	intronic	29	0	0	61	6	9.836065574	0	0	NA	0	0	NA	6.85E-07	3.412637193	3	0	0.587362807	4	0	0.412637193	unphased	0.58604181	0.58604181	1	0.01875	0.98125	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214160279	3	11467513	C	A	ATG7	CCDS2605.1	r.?	-	-	intronic	38	0	0	81	46	56.79012346	0	0	NA	0	0	NA	1.22E-83	3.412637193	3	0	0.587362807	4	0	0.412637193	unphased	3.383607654	0.991493517	3.412637193	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214160383	3	12361134	T	A	PPARG	CCDS2610.2	r.?	-	-	intronic	35	0	0	82	18	21.95121951	0	0	NA	0	0	NA	1.65E-24	3.412637193	3	0	0.587362807	4	0	0.412637193	unphased	1.307873796	1.307873796	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214160902	3	18292921	T	A	AC139618.1	ENST00000448265	r.?	-	-	intronic	23	0	0	77	5	6.493506494	264	2	0.757575758	194	22	11.34020619	4.58E-05	3.412637193	3	0	0.587362807	4	0	0.412637193	unphased	0.386889074	0.937601072	0.412637193	0.00375	0.99625	0	2	1	5.79E-23	0.380528641	YES	1_1	somatic	custom.pulldown.HiSeq
1352322	PD9768b	1214161004	3	19484267	C	A	KCNH8	CCDS2632.1	r.?	-	-	intronic	38	0	0	75	8	10.66666667	0	0	NA	0	0	NA	4.89E-09	3.412637193	3	0	0.587362807	4	0	0.412637193	unphased	0.635529785	0.635529785	1	0.01125	0.98875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214161122	3	20966130	G	A	-	-	-	-	-	-	39	0	0	68	33	48.52941176	0	0	NA	2	0	0	2.71E-57	3.412637193	3	0	0.587362807	4	0	0.412637193	unphased	2.891426873	0.963808958	3	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214161483	3	25254141	G	A	RARB	ENST00000404969	r.?	-	-	intronic	24	0	0	106	57	53.77358491	137	0	0	181	97	53.59116022	2.53E-101	3.412637193	3	0	0.587362807	4	0	0.412637193	unphased	3.203879519	0.93882805	3.412637193	0	1	0	2	1	4.74E-171	1	YES	1_1	somatic	custom.pulldown.HiSeq
1352322	PD9768b	1214161596	3	26647358	G	A	-	-	-	-	-	-	32	0	0	92	57	61.95652174	0	0	NA	0	0	NA	1.73E-106	3.412637193	3	0	0.587362807	4	0	0.412637193	unphased	3.691426403	1.081693188	3.412637193	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214161804	3	28838282	G	A	-	-	-	-	-	-	24	0	0	77	11	14.28571429	0	0	NA	0	0	NA	2.41E-13	3.412637193	3	0	0.587362807	4	0	0.412637193	unphased	0.851155963	0.851155963	1	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214161874	3	29791213	C	A	RBMS3	CCDS33725.1	r.?	-	-	intronic	45	0	0	92	52	56.52173913	0	0	NA	0	0	NA	3.45E-94	3.412637193	3	0	0.587362807	4	0	0.412637193	unphased	3.367617069	0.98680782	3.412637193	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214161897	3	30272308	G	A	-	-	-	-	-	-	37	0	0	69	35	50.72463768	0	0	NA	0	0	NA	1.38E-61	3.412637193	3	0	0.587362807	4	0	0.412637193	unphased	3.022220447	1.007406816	3	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214162288	3	34236846	G	A	-	-	-	-	-	-	19	0	0	73	37	50.68493151	0	0	NA	0	0	NA	5.33E-65	2	2	0	1	NA	NA	NA	unphased	2.303860523	1.151930262	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214162414	3	36371028	G	A	-	-	-	-	-	-	29	0	0	64	41	64.0625	0	0	NA	0	0	NA	5.96E-78	3	3	0	1	NA	NA	NA	unphased	3.552556818	1.184185606	3	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214162560	3	38939098	T	A	SCN11A	CCDS33737.1	r.?	-	-	intronic	15	0	0	70	45	64.28571429	0	0	NA	0	0	NA	1.62E-85	3	3	0	1	NA	NA	NA	unphased	3.564935065	1.188311688	3	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214162875	3	42689340	T	A	NKTR	CCDS2702.1	r.6450u>a	c.?	p.?	3'UTR variant	41	0	0	80	36	45	0	0	NA	0	0	NA	8.50E-61	3	3	0	1	NA	NA	NA	unphased	2.495454545	0.831818182	3	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214163297	3	47982978	G	A	MAP4	CCDS46818.1	r.?	-	-	intronic	6	0	0	59	10	16.94915254	0	0	NA	0	0	NA	4.91E-13	3	3	0	1	NA	NA	NA	unphased	0.93990755	0.93990755	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214163322	3	48262479	G	A	CAMP	CCDS2762.1	r.?	-	-	upstream	9	0	0	73	16	21.91780822	0	0	NA	0	0	NA	6.15E-22	3	3	0	1	NA	NA	NA	unphased	1.215442092	1.215442092	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214163341	3	48434090	G	A	FBXW12	CCDS2764.1	r.?	-	-	intronic	25	0	0	71	45	63.38028169	0	0	NA	0	0	NA	4.41E-85	3	3	0	1	NA	NA	NA	unphased	3.514724712	1.171574904	3	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214163578	3	52459764	G	A	PHF7	CCDS2854.1	r.?	-	-	downstream	6	0	0	37	16	43.24324324	0	0	NA	0	0	NA	1.78E-27	2	2	0	1	NA	NA	NA	unphased	1.965601966	0.982800983	2	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214164064	3	60705086	C	A	FHIT	CCDS2894.1	r.?	-	-	intronic	34	0	0	61	13	21.31147541	0	0	NA	0	0	NA	6.41E-18	2	2	0	1	NA	NA	NA	unphased	0.968703428	0.968703428	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214164316	3	65363303	G	A	MAGI1	CCDS33781.1	r.?	-	-	intronic	32	0	0	57	27	47.36842105	0	0	NA	0	0	NA	9.04E-47	2	2	0	1	NA	NA	NA	unphased	2.153110048	1.076555024	2	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214164343	3	65743838	C	A	MAGI1	CCDS33781.1	r.?	-	-	intronic	35	0	0	48	26	54.16666667	0	0	NA	0	0	NA	3.67E-47	2	2	0	1	NA	NA	NA	unphased	2.462121212	1.231060606	2	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214164556	3	70237243	C	A	-	-	-	-	-	-	31	0	0	67	14	20.89552239	0	0	NA	0	0	NA	4.66E-19	2	2	0	1	NA	NA	NA	unphased	0.949796472	0.949796472	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214164628	3	71416697	G	A	FOXP1	CCDS2914.1	r.?	-	-	intronic	27	0	0	56	19	33.92857143	0	0	NA	0	0	NA	6.79E-30	2	2	0	1	NA	NA	NA	unphased	1.542207792	0.771103896	2	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214166188	3	77267542	T	A	ROBO2	CCDS43109.1	r.?	-	-	intronic	18	0	0	48	16	33.33333333	0	0	NA	0	0	NA	2.96E-25	2	2	0	1	NA	NA	NA	unphased	1.515151515	0.757575758	2	0.00375	0.99625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214166400	3	82315683	G	A	-	-	-	-	-	-	42	0	0	55	12	21.81818182	0	0	NA	0	0	NA	8.78E-17	2	2	0	1	NA	NA	NA	unphased	0.991735537	0.991735537	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214166494	3	84478271	C	A	-	-	-	-	-	-	49	0	0	44	22	50	0	0	NA	0	0	NA	4.51E-39	2	2	0	1	NA	NA	NA	unphased	2.272727273	1.136363636	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214167129	3	94992999	T	A	-	-	-	-	-	-	35	0	0	60	27	45	0	0	NA	0	0	NA	5.59E-46	2	2	0	1	NA	NA	NA	unphased	2.045454545	1.022727273	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214167183	3	96362945	G	A	-	-	-	-	-	-	15	0	0	37	15	40.54054054	0	0	NA	0	0	NA	2.58E-25	2	2	0	1	NA	NA	NA	unphased	1.842751843	0.921375921	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214167239	3	97825879	G	A	OR5AC2	ENST00000394195	r.?	-	-	downstream	38	0	0	46	25	54.34782609	0	0	NA	0	0	NA	1.87E-45	2	2	0	1	NA	NA	NA	unphased	2.470355731	1.235177866	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214167438	3	100964213	G	A	IMPG2	CCDS2940.1	r.?	-	-	intronic	34	0	0	53	24	45.28301887	0	0	NA	0	0	NA	4.04E-41	2	2	0	1	NA	NA	NA	unphased	2.058319039	1.02915952	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214167587	3	103547439	G	A	-	-	-	-	-	-	39	0	0	59	16	27.11864407	0	0	NA	0	0	NA	1.37E-23	2	2	0	1	NA	NA	NA	unphased	1.232665639	1.232665639	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214167597	3	103741432	C	A	-	-	-	-	-	-	25	0	0	47	23	48.93617021	0	0	NA	0	0	NA	1.71E-40	2	2	0	1	NA	NA	NA	unphased	2.224371373	1.112185687	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214167601	3	103853729	C	A	-	-	-	-	-	-	46	0	0	46	6	13.04347826	0	0	NA	0	0	NA	1.23E-07	2	2	0	1	NA	NA	NA	unphased	0.592885375	0.592885375	1	0.02	0.98	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214167656	3	104684750	T	A	-	-	-	-	-	-	44	0	0	52	28	53.84615385	0	0	NA	0	0	NA	1.41E-50	2	2	0	1	NA	NA	NA	unphased	2.447552448	1.223776224	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214167805	3	107273979	G	A	BBX	CCDS2950.1	r.?	-	-	intronic	30	0	0	67	37	55.2238806	0	0	NA	0	0	NA	6.28E-67	2	2	0	1	NA	NA	NA	unphased	2.510176391	1.255088195	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214167861	3	108660162	G	A	GUCA1C	CCDS2954.1	r.?	-	-	intronic	29	0	0	51	26	50.98039216	0	0	NA	0	0	NA	3.27E-46	2	2	0	1	NA	NA	NA	unphased	2.317290553	1.158645276	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214168159	3	114657809	T	A	ZBTB20	CCDS2981.1	r.?	-	-	intronic	33	0	0	53	23	43.39622642	0	0	NA	0	0	NA	6.43E-39	2	2	0	1	NA	NA	NA	unphased	1.972555746	0.986277873	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214168269	3	116740964	T	A	LSAMP	ENST00000474851	r.?	-	-	intronic	34	0	0	69	5	7.246376812	0	0	NA	0	0	NA	2.69E-05	2	2	0	1	NA	NA	NA	unphased	0.329380764	0.329380764	1	0.57125	0.42875	0	1	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214168288	3	117254494	G	A	-	-	-	-	-	-	34	0	0	58	18	31.03448276	0	0	NA	0	0	NA	1.42E-27	2	2	0	1	NA	NA	NA	unphased	1.410658307	1.410658307	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214168326	3	118032132	C	A	-	-	-	-	-	-	22	0	0	51	19	37.25490196	0	0	NA	0	0	NA	7.94E-31	2	2	0	1	NA	NA	NA	unphased	1.693404635	0.846702317	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214168449	3	120138985	G	A	MIR198	CCDS2998.1	r.?	-	-	intronic	38	0	0	49	21	42.85714286	0	0	NA	0	0	NA	1.63E-35	2	2	0	1	NA	NA	NA	unphased	1.948051948	0.974025974	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214168474	3	120586823	G	A	-	-	-	-	-	-	45	0	0	52	9	17.30769231	0	0	NA	0	0	NA	5.92E-12	2	2	0	1	NA	NA	NA	unphased	0.786713287	0.786713287	1	0.005	0.995	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214168490	3	120909392	G	A	STXBP5L	CCDS43137.1	r.?	-	-	intronic	12	0	0	59	25	42.37288136	0	0	NA	0	0	NA	7.66E-42	2	2	0	1	NA	NA	NA	unphased	1.926040062	0.963020031	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214168853	3	126397715	C	A	-	-	-	-	-	-	7	0	0	56	23	41.07142857	0	0	NA	0	0	NA	3.22E-38	2	2	0	1	NA	NA	NA	unphased	1.866883117	0.933441558	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214169283	3	133570061	G	A	RAB6B	CCDS3082.1	r.?	-	-	intronic	32	0	0	79	14	17.72151899	0	0	NA	0	0	NA	5.60E-18	4	4	0	1	NA	NA	NA	unphased	1.15995397	1.15995397	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214169382	3	134605713	T	A	EPHB1	CCDS46921.1	r.?	-	-	intronic	29	0	0	65	34	52.30769231	0	0	NA	0	0	NA	1.70E-60	2	2	0	1	NA	NA	NA	unphased	2.377622378	1.188811189	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214169496	3	136675115	G	A	IL20RB	CCDS3093.1	r.?	-	-	upstream	23	0	0	60	33	55	0	0	NA	0	0	NA	8.98E-60	2	2	0	1	NA	NA	NA	unphased	2.5	1.25	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214169640	3	139832630	G	A	CLSTN2	CCDS3112.1	r.?	-	-	intronic	29	0	0	55	23	41.81818182	0	0	NA	0	0	NA	1.91E-38	2	2	0	1	NA	NA	NA	unphased	1.900826446	0.950413223	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214169855	3	143947213	G	A	-	-	-	-	-	-	30	0	0	57	14	24.56140351	0	0	NA	0	0	NA	3.84E-20	2	2	0	1	NA	NA	NA	unphased	1.116427432	1.116427432	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214169995	3	146859502	T	A	-	-	-	-	-	-	39	0	0	45	23	51.11111111	0	0	NA	0	0	NA	4.42E-41	2	2	0	1	NA	NA	NA	unphased	2.323232323	1.161616162	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214170295	3	152826052	G	A	-	-	-	-	-	-	19	0	0	54	23	42.59259259	0	0	NA	0	0	NA	1.12E-38	2	2	0	1	NA	NA	NA	unphased	1.936026936	0.968013468	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214170351	3	153923202	G	A	ENSG00000114790	CCDS46938.1	r.?	-	-	intronic	33	0	0	70	33	47.14285714	0	0	NA	0	0	NA	9.75E-57	2	2	0	1	NA	NA	NA	unphased	2.142857143	1.071428571	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214170966	3	165655819	T	A	-	-	-	-	-	-	30	0	0	51	19	37.25490196	0	0	NA	0	0	NA	7.94E-31	2	2	0	1	NA	NA	NA	unphased	1.693404635	0.846702317	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214170970	3	165699928	C	A	-	-	-	-	-	-	32	0	0	55	22	40	0	0	NA	0	0	NA	2.65E-36	2	2	0	1	NA	NA	NA	unphased	1.818181818	0.909090909	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214170996	3	165953756	T	A	-	-	-	-	-	-	35	0	0	59	24	40.6779661	0	0	NA	0	0	NA	1.09E-39	2	2	0	1	NA	NA	NA	unphased	1.848998459	0.92449923	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214171089	3	168096691	C	A	-	-	-	-	-	-	35	0	0	66	29	43.93939394	0	0	NA	0	0	NA	6.96E-49	2	2	0	1	NA	NA	NA	unphased	1.997245179	0.99862259	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214171395	3	174031171	C	A	-	-	-	-	-	-	25	0	0	55	21	38.18181818	0	0	NA	0	0	NA	3.41E-34	2	2	0	1	NA	NA	NA	unphased	1.73553719	0.867768595	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214171676	3	178702745	C	A	-	-	-	-	-	-	31	0	0	61	22	36.06557377	0	0	NA	0	0	NA	4.38E-35	2	2	0	1	NA	NA	NA	unphased	1.639344262	0.819672131	2	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214171837	3	182227241	G	A	-	-	-	-	-	-	26	0	0	47	26	55.31914894	0	0	NA	0	0	NA	1.69E-47	2	2	0	1	NA	NA	NA	unphased	2.51450677	1.257253385	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214171972	3	183675732	G	A	ABCC5	CCDS43176.1	r.?	-	-	intronic	35	0	0	61	6	9.836065574	0	0	NA	0	0	NA	6.85E-07	2	2	0	1	NA	NA	NA	unphased	0.44709389	0.44709389	1	0.145	0.855	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214172283	3	188790269	G	A	TPRG1	CCDS3292.1	r.?	-	-	intronic	23	0	0	55	25	45.45454545	0	0	NA	0	0	NA	7.96E-43	2	2	0	1	NA	NA	NA	unphased	2.066115702	1.033057851	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214172464	3	192412951	G	A	FGF12	CCDS46983.1	r.?	-	-	intronic	40	0	0	74	41	55.40540541	0	0	NA	0	0	NA	4.41E-74	2	2	0	1	NA	NA	NA	unphased	2.518427518	1.259213759	2	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214172588	3	194556279	C	A	-	-	-	-	-	-	12	0	0	19	4	21.05263158	0	0	NA	0	0	NA	2.28E-06	2	2	0	1	NA	NA	NA	unphased	0.956937799	0.956937799	1	0.00125	0.99625	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214172603	3	195001578	C	A	ACAP2	CCDS33924.1	r.?	-	-	intronic	18	0	0	63	27	42.85714286	0	0	NA	0	0	NA	3.06E-45	2	2	0	1	NA	NA	NA	unphased	1.948051948	0.974025974	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214173402	4	2172793	C	A	POLN	CCDS3360.1	r.?	-	-	intronic	25	0	0	61	22	36.06557377	0	0	NA	0	0	NA	4.38E-35	1.74953812	1	0	0.25046188	2	0	0.74953812	unphased	1.549013748	0.885384394	1.74953812	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214173444	4	2882950	G	A	ADD1	CCDS3364.1	r.?	-	-	intronic	18	0	0	46	24	52.17391304	0	0	NA	0	0	NA	4.23E-43	1.74953812	1	0	0.25046188	2	0	0.74953812	unphased	2.240865739	1.28083276	1.74953812	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214173553	4	3830152	G	A	-	-	-	-	-	-	7	0	0	50	20	40	0	0	NA	0	0	NA	3.90E-33	1.74953812	1	0	0.25046188	2	0	0.74953812	unphased	1.717997066	0.981971782	1.74953812	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214173658	4	5228470	G	A	STK32B	CCDS3380.1	r.?	-	-	intronic	27	0	0	69	31	44.92753623	0	0	NA	0	0	NA	1.54E-52	1.74953812	1	0	0.25046188	2	0	0.74953812	unphased	1.929634386	1.102939321	1.74953812	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214173820	4	8515387	T	A	-	-	-	-	-	-	24	0	0	63	25	39.68253968	0	0	NA	0	0	NA	6.06E-41	1.74953812	1	0	0.25046188	2	0	0.74953812	unphased	1.704362169	0.974178356	1.74953812	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214173927	4	9838128	G	A	SLC2A9	CCDS3406.1	r.?	-	-	intronic	22	0	0	40	14	35	0	0	NA	2	0	0	1.25E-22	1.74953812	1	0	0.25046188	2	0	0.74953812	unphased	1.503247433	1.503247433	1	0	0.995	0.005	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214173935	4	10072774	G	A	AC005674.1	ENST00000513305	r.?	-	-	intronic	22	0	0	51	13	25.49019608	0	0	NA	0	0	NA	4.87E-19	1.74953812	1	0	0.25046188	2	0	0.74953812	unphased	1.094802052	1.094802052	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214174148	4	14715250	C	A	-	-	-	-	-	-	39	0	0	48	19	39.58333333	0	0	NA	0	0	NA	1.92E-31	1.74953812	1	0	0.25046188	2	0	0.74953812	unphased	1.700101263	0.97174291	1.74953812	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214174347	4	18977098	G	A	-	-	-	-	-	-	31	0	0	52	22	42.30769231	0	0	NA	0	0	NA	5.59E-37	1.74953812	1	0	0.25046188	2	0	0.74953812	unphased	1.817112282	1.038624001	1.74953812	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214174426	4	21138316	G	A	KCNIP4	CCDS43217.1	r.?	-	-	intronic	45	0	0	49	21	42.85714286	0	0	NA	0	0	NA	1.63E-35	1.74953812	1	0	0.25046188	2	0	0.74953812	unphased	1.840711142	1.052112624	1.74953812	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214174842	4	29263441	G	A	-	-	-	-	-	-	36	0	0	46	16	34.7826087	0	0	NA	0	0	NA	1.31E-25	1.74953812	1	0	0.25046188	2	0	0.74953812	unphased	1.493910492	0.853888506	1.74953812	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214174905	4	30927956	G	A	PCDH7	CCDS43220.1	r.?	-	-	intronic	12	0	0	44	12	27.27272727	0	0	NA	0	0	NA	4.44E-18	1.74953812	1	0	0.25046188	2	0	0.74953812	unphased	1.171361636	1.171361636	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214175306	4	37636408	C	A	RELL1	CCDS43221.1	r.?	-	-	intronic	18	0	0	59	29	49.15254237	0	0	NA	0	0	NA	9.52E-51	1.74953812	1	0	0.25046188	2	0	0.74953812	unphased	2.11109809	1.206660241	1.74953812	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214175371	4	38866898	T	A	FAM114A1	CCDS3447.1	r.?	-	-	upstream	30	0	0	50	5	10	0	0	NA	0	0	NA	5.49E-06	1.74953812	1	0	0.25046188	2	0	0.74953812	unphased	0.429499267	0.573018576	0.74953812	0.0125	0.9875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214175693	4	44093756	T	A	-	-	-	-	-	-	42	0	0	52	6	11.53846154	0	0	NA	0	0	NA	2.61E-07	1.74953812	1	0	0.25046188	2	0	0.74953812	unphased	0.495576077	0.66117528	0.74953812	0.01	0.99	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214175777	4	45339841	G	A	-	-	-	-	-	-	32	0	0	49	20	40.81632653	0	0	NA	0	0	NA	2.35E-33	1.74953812	1	0	0.25046188	2	0	0.74953812	unphased	1.753058231	1.002012023	1.74953812	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214175972	4	48955004	G	A	-	-	-	-	-	-	37	0	0	59	8	13.55932203	0	0	NA	0	0	NA	6.90E-10	1.74953812	1	0	0.25046188	2	0	0.74953812	unphased	0.582371887	0.776974341	0.74953812	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214175973	4	48956580	G	A	-	-	-	-	-	-	32	0	0	61	13	21.31147541	0	0	NA	0	0	NA	6.41E-18	1.74953812	1	0	0.25046188	2	0	0.74953812	unphased	0.915326306	0.915326306	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214175974	4	48956582	G	A	-	-	-	-	-	-	32	0	0	61	13	21.31147541	0	0	NA	0	0	NA	6.41E-18	1.74953812	1	0	0.25046188	2	0	0.74953812	unphased	0.915326306	0.915326306	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214179480	4	53916348	G	A	SCFD2	CCDS33984.1	r.?	-	-	intronic	25	0	0	67	22	32.8358209	0	0	NA	0	0	NA	5.21E-34	3	2	1	1	NA	NA	NA	unphased	1.820895522	0.910447761	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214179786	4	58285209	G	A	-	-	-	-	-	-	36	0	0	74	23	31.08108108	0	0	NA	0	0	NA	7.70E-35	3	2	1	1	NA	NA	NA	unphased	1.723587224	0.861793612	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214179872	4	59892079	G	A	-	-	-	-	-	-	30	0	0	56	8	14.28571429	65	0	0	80	7	8.75	4.48E-10	3	2	1	1	NA	NA	NA	unphased	0.792207792	0.792207792	1	0.00125	0.99875	0	2	1	1.80E-07	1	YES	1_1	somatic	custom.pulldown.HiSeq
1352322	PD9768b	1214179875	4	59892172	G	A	-	-	-	-	-	-	37	0	0	56	8	14.28571429	96	1	1.041666667	121	11	9.090909091	4.48E-10	3	2	1	1	NA	NA	NA	unphased	0.792207792	0.792207792	1	0.0025	0.9975	0	2	1	3.76E-11	0.381961184	YES	1_1	somatic	custom.pulldown.HiSeq
1352322	PD9768b	1214179877	4	59892282	G	A	-	-	-	-	-	-	28	0	0	63	13	20.63492063	109	0	0	102	14	13.7254902	1.01E-17	3	2	1	1	NA	NA	NA	unphased	1.144300144	1.144300144	1	0	0.99875	0.00125	2	1	2.41E-16	1	YES	1_1	somatic	custom.pulldown.HiSeq
1352322	PD9768b	1214179878	4	59892310	G	A	-	-	-	-	-	-	31	0	0	66	11	16.66666667	101	0	0	79	11	13.92405063	4.07E-14	3	2	1	1	NA	NA	NA	unphased	0.924242424	0.924242424	1	0	1	0	2	1	3.23E-13	1	YES	1_1	somatic	custom.pulldown.HiSeq
1352322	PD9768b	1214179879	4	59892322	G	A	-	-	-	-	-	-	31	0	0	62	11	17.74193548	95	0	0	74	10	13.51351351	1.96E-14	3	2	1	1	NA	NA	NA	unphased	0.983870968	0.983870968	1	0	1	0	2	1	5.24E-12	1	YES	1_1	somatic	custom.pulldown.HiSeq
1352322	PD9768b	1214179881	4	59962976	C	A	-	-	-	-	-	-	41	0	0	62	19	30.64516129	0	0	NA	0	0	NA	6.66E-29	3	2	1	1	NA	NA	NA	unphased	1.69941349	0.849706745	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214179882	4	59964153	G	A	-	-	-	-	-	-	34	0	0	65	12	18.46153846	76	0	0	101	10	9.900990099	7.70E-16	3	2	1	1	NA	NA	NA	unphased	1.023776224	1.023776224	1	0	1	0	2	1	1.24E-10	1	YES	1_1	somatic	custom.pulldown.HiSeq
1352322	PD9768b	1214179884	4	59964201	G	A	-	-	-	-	-	-	27	0	0	58	10	17.24137931	83	0	0	118	18	15.25423729	4.10E-13	3	2	1	1	NA	NA	NA	unphased	0.956112853	0.956112853	1	0.00125	0.99875	0	2	1	1.86E-21	1	YES	1_1	somatic	custom.pulldown.HiSeq
1352322	PD9768b	1214179885	4	59964236	G	A	-	-	-	-	-	-	32	0	0	61	10	16.39344262	70	0	0	126	24	19.04761905	6.98E-13	3	2	1	1	NA	NA	NA	unphased	0.909090909	0.909090909	1	0	1	0	2	1	1.45E-30	1	YES	1_1	somatic	custom.pulldown.HiSeq
1352322	PD9768b	1214179887	4	59964304	G	A	-	-	-	-	-	-	36	0	0	60	10	16.66666667	58	0	0	114	18	15.78947368	5.86E-13	3	2	1	1	NA	NA	NA	unphased	0.924242424	0.924242424	1	0	1	0	2	1	9.69E-22	1	YES	1_1	somatic	custom.pulldown.HiSeq
1352322	PD9768b	1214179925	4	60478761	T	A	-	-	-	-	-	-	29	0	0	57	23	40.35087719	0	0	NA	0	0	NA	5.38E-38	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	1.735494137	0.988574239	1.755552662	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214180003	4	62369860	G	A	LPHN3	ENST00000512091	r.?	-	-	intronic	42	0	0	57	18	31.57894737	0	0	NA	0	0	NA	9.84E-28	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	1.358212802	1.358212802	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214180169	4	65611390	C	A	-	-	-	-	-	-	42	0	0	59	26	44.06779661	0	0	NA	0	0	NA	5.03E-44	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	1.895359109	1.079636714	1.755552662	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214180390	4	70286666	C	A	UGT2B28	ENST00000381079	r.?	-	-	intronic	29	0	0	41	5	12.19512195	0	0	NA	0	0	NA	2.02E-06	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	0.524513074	0.694211139	0.755552662	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214181364	4	91765969	C	A	FAM190A	CCDS47099.1	r.?	-	-	intronic	30	0	0	56	9	16.07142857	0	0	NA	0	0	NA	1.20E-11	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	0.691233301	0.914871108	0.755552662	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214181441	4	93912948	C	A	GRID2	CCDS3637.1	r.?	-	-	intronic	33	0	0	44	12	27.27272727	0	0	NA	0	0	NA	4.44E-18	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	1.173001966	1.173001966	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214181576	4	96714747	G	A	-	-	-	-	-	-	33	0	0	36	8	22.22222222	0	0	NA	0	0	NA	1.04E-11	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	0.95577938	0.95577938	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214181591	4	96912009	G	A	-	-	-	-	-	-	34	0	0	53	27	50.94339623	0	0	NA	0	0	NA	6.40E-48	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	2.191079144	1.248085113	1.755552662	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214182122	4	108697110	G	A	-	-	-	-	-	-	33	0	0	63	22	34.92063492	0	0	NA	0	0	NA	1.03E-34	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	1.501939025	0.855536298	1.755552662	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214182316	4	112527217	G	A	-	-	-	-	-	-	41	0	0	55	23	41.81818182	0	0	NA	0	0	NA	1.91E-38	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	1.798603014	1.024522393	1.755552662	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214182467	4	115901755	G	A	NDST4	CCDS3706.1	r.?	-	-	intronic	29	0	0	68	29	42.64705882	0	0	NA	0	0	NA	2.12E-48	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	1.834253074	1.044829422	1.755552662	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214182473	4	115995714	G	A	NDST4	CCDS3706.1	r.?	-	-	intronic	31	0	0	60	25	41.66666667	0	0	NA	0	0	NA	1.31E-41	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	1.792086337	1.020810355	1.755552662	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214183086	4	128666068	G	A	SLC25A31	CCDS3733.1	r.?	-	-	intronic	29	0	0	50	15	30	0	0	NA	0	0	NA	5.83E-23	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	1.290302162	1.290302162	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214183183	4	130403603	G	A	-	-	-	-	-	-	24	0	0	45	19	42.22222222	0	0	NA	0	0	NA	4.11E-32	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	1.815980821	1.03442116	1.755552662	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214183223	4	131279216	C	A	-	-	-	-	-	-	29	0	0	47	23	48.93617021	0	0	NA	0	0	NA	1.71E-40	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	2.104748208	1.198909183	1.755552662	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214183238	4	131529419	C	A	-	-	-	-	-	-	33	0	0	42	6	14.28571429	0	0	NA	0	0	NA	7.02E-08	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	0.614429601	0.813218763	0.755552662	0.00375	0.99625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214183502	4	133330630	C	A	-	-	-	-	-	-	39	0	0	55	28	50.90909091	0	0	NA	0	0	NA	1.25E-49	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	2.189603669	1.247244652	1.755552662	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214183558	4	134686886	G	A	-	-	-	-	-	-	36	0	0	54	9	16.66666667	0	0	NA	0	0	NA	8.48E-12	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	0.716834535	0.948755223	0.755552662	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214183563	4	134783580	G	A	-	-	-	-	-	-	31	0	0	44	14	31.81818182	0	0	NA	0	0	NA	6.10E-22	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	1.368502293	1.368502293	1	0	0.99625	0.00375	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214183585	4	135463022	G	A	-	-	-	-	-	-	42	0	0	49	20	40.81632653	0	0	NA	0	0	NA	2.35E-33	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	1.755513146	0.999977491	1.755552662	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214183597	4	135796579	G	A	-	-	-	-	-	-	33	0	0	35	15	42.85714286	0	0	NA	0	0	NA	9.02E-26	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	1.843288803	1.049976365	1.755552662	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214183689	4	137842099	G	A	-	-	-	-	-	-	25	0	0	69	12	17.39130435	0	0	NA	0	0	NA	1.65E-15	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	0.748001254	0.99000545	0.755552662	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214183692	4	138002483	G	A	-	-	-	-	-	-	34	0	0	36	6	16.66666667	0	0	NA	0	0	NA	2.68E-08	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	0.716834535	0.948755223	0.755552662	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214184041	4	144775731	T	A	-	-	-	-	-	-	30	0	0	52	13	25	0	0	NA	0	0	NA	6.47E-19	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	1.075251802	1.075251802	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214184229	4	148632030	G	A	-	-	-	-	-	-	29	0	0	42	11	26.19047619	0	0	NA	0	0	NA	1.81E-16	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	1.126454269	1.126454269	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214184476	4	153328104	G	A	FBXW7	CCDS3777.1	r.?	-	-	intronic	37	0	0	42	6	14.28571429	0	0	NA	0	0	NA	7.02E-08	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	0.614429601	0.813218763	0.755552662	0.0025	0.99625	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214184527	4	154540580	G	A	KIAA0922	CCDS3783.2	r.?	-	-	intronic	29	0	0	66	18	27.27272727	0	0	NA	0	0	NA	2.08E-26	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	1.173001966	1.173001966	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214184551	4	154881681	T	A	-	-	-	-	-	-	29	0	0	65	24	36.92307692	0	0	NA	0	0	NA	1.94E-38	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	1.5880642	0.904595022	1.755552662	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214184911	4	162466959	T	A	FSTL5	CCDS3802.1	r.?	-	-	intronic	23	0	0	69	26	37.68115942	0	0	NA	0	0	NA	8.50E-42	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	1.620669383	0.923167625	1.755552662	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214185267	4	168357762	G	A	-	-	-	-	-	-	33	0	0	37	15	40.54054054	0	0	NA	0	0	NA	2.58E-25	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	1.743651571	0.993220886	1.755552662	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214185311	4	169055141	G	A	ANXA10	CCDS34096.1	r.?	-	-	intronic	23	0	0	42	10	23.80952381	0	0	NA	0	0	NA	1.24E-14	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	1.024049335	1.024049335	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214185514	4	172897975	T	A	GALNTL6	CCDS34104.1	r.?	-	-	intronic	36	0	0	59	11	18.6440678	0	0	NA	0	0	NA	1.10E-14	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	0.8018827	1.061319402	0.755552662	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214185914	4	180394008	G	A	-	-	-	-	-	-	30	0	0	49	25	51.02040816	0	0	NA	0	0	NA	1.68E-44	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	2.194391433	1.249971863	1.755552662	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214186055	4	182516448	G	A	-	-	-	-	-	-	19	0	0	50	19	38	0	0	NA	0	0	NA	5.00E-31	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	1.634382739	0.930979044	1.755552662	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214186725	4	190430641	G	A	ENSG00000227461	ENST00000454642	r.?	-	-	downstream	42	0	0	35	5	14.28571429	0	0	NA	0	0	NA	8.95E-07	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	0.614429601	0.813218763	0.755552662	0.00375	0.99625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214187648	4	190871574	T	A	FRG1	CCDS34121.1	r.?	-	-	intronic	63	0	0	88	20	22.72727273	0	0	NA	0	0	NA	2.12E-27	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214188130	5	716793	G	A	ZDHHC11	CCDS3857.1	r.?	-	-	intronic	66	0	0	96	8	8.333333333	0	0	NA	0	0	NA	3.50E-08	3	2	1	1	NA	NA	NA	unphased	0.462121212	0.462121212	1	0.17125	0.82875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214188539	5	5303034	G	A	ADAMTS16	CCDS43299.1	r.?	-	-	intronic	28	0	0	53	6	11.32075472	0	0	NA	0	0	NA	2.93E-07	3	2	1	1	NA	NA	NA	unphased	0.627787307	0.627787307	1	0.01125	0.98875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214188731	5	7864609	G	A	MTRR	CCDS3874.1	r.?	-	-	upstream	29	0	0	55	15	27.27272727	0	0	NA	0	0	NA	3.01E-22	3	2	1	1	NA	NA	NA	unphased	1.512396694	1.512396694	1	0	0.99625	0.00375	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214188754	5	8224584	G	A	-	-	-	-	-	-	31	0	0	54	6	11.11111111	0	0	NA	0	0	NA	3.29E-07	3	2	1	1	NA	NA	NA	unphased	0.616161616	0.616161616	1	0.01625	0.98375	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214188808	5	8957788	C	A	-	-	-	-	-	-	27	0	0	58	12	20.68965517	0	0	NA	0	0	NA	1.76E-16	3	2	1	1	NA	NA	NA	unphased	1.147335423	1.147335423	1	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214188866	5	9859653	G	A	-	-	-	-	-	-	31	0	0	63	12	19.04761905	0	0	NA	0	0	NA	5.15E-16	3	2	1	1	NA	NA	NA	unphased	1.056277056	1.056277056	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214189059	5	12772780	C	A	-	-	-	-	-	-	30	0	0	53	23	43.39622642	0	0	NA	0	0	NA	6.43E-39	3	2	1	1	NA	NA	NA	unphased	2.40651801	1.203259005	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214189507	5	18649642	C	A	-	-	-	-	-	-	45	0	0	69	24	34.7826087	0	0	NA	0	0	NA	1.11E-37	3	2	1	1	NA	NA	NA	unphased	1.928853755	0.964426877	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214190022	5	25322388	T	A	-	-	-	-	-	-	33	0	0	64	30	46.875	0	0	NA	0	0	NA	1.28E-51	3	2	1	1	NA	NA	NA	unphased	2.599431818	1.299715909	2	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214190135	5	27203537	G	A	-	-	-	-	-	-	39	0	0	63	22	34.92063492	0	0	NA	0	0	NA	1.03E-34	3	2	1	1	NA	NA	NA	unphased	1.936507937	0.968253968	2	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214190166	5	27739047	G	A	-	-	-	-	-	-	36	0	0	50	17	34	0	0	NA	0	0	NA	6.43E-27	3	2	1	1	NA	NA	NA	unphased	1.885454545	0.942727273	2	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214190348	5	30235630	C	A	-	-	-	-	-	-	43	0	0	57	24	42.10526316	0	0	NA	2	0	0	3.83E-40	3	2	1	1	NA	NA	NA	unphased	2.33492823	1.167464115	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214190386	5	30603174	G	A	-	-	-	-	-	-	31	0	0	58	6	10.34482759	0	0	NA	0	0	NA	5.06E-07	3	2	1	1	NA	NA	NA	unphased	0.573667712	0.573667712	1	0.01625	0.98375	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214190578	5	32784808	G	A	C5orf23	CCDS3898.1	r.?	-	-	upstream	30	0	0	76	28	36.84210526	0	0	NA	0	0	NA	1.47E-44	3	2	1	1	NA	NA	NA	unphased	2.043062201	1.0215311	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214190659	5	34192064	G	A	AC138409.2	ENST00000502234	r.?	-	-	intronic	8	0	0	336	17	5.05952381	0	0	NA	0	0	NA	2.79E-12	3	2	1	1	NA	NA	NA	unphased	0.280573593	0.280573593	1	1	0	0	1	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214190750	5	35094798	C	A	PRLR	CCDS3909.1	r.?	-	-	intronic	22	0	0	54	8	14.81481481	0	0	NA	0	0	NA	3.31E-10	3	2	1	1	NA	NA	NA	unphased	0.821548822	0.821548822	1	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214190850	5	37244134	C	A	C5orf42	ENST00000508244	r.?	-	-	intronic	14	0	0	26	10	38.46153846	0	0	NA	0	0	NA	4.82E-17	3	2	1	1	NA	NA	NA	unphased	2.132867133	1.066433566	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214191123	5	42084113	G	A	-	-	-	-	-	-	31	0	0	61	7	11.47540984	0	0	NA	0	0	NA	2.69E-08	3	2	1	1	NA	NA	NA	unphased	0.636363636	0.636363636	1	0.01	0.99	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214191169	5	42992192	G	A	-	-	-	-	-	-	8	0	0	60	8	13.33333333	0	0	NA	0	0	NA	7.93E-10	3	2	1	1	NA	NA	NA	unphased	0.739393939	0.739393939	1	0.00125	0.9975	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214191295	5	45574551	G	A	HCN1	CCDS3952.1	r.?	-	-	intronic	26	0	0	70	24	34.28571429	0	0	NA	0	0	NA	1.68E-37	3	2	1	1	NA	NA	NA	unphased	1.901298701	0.950649351	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214191840	5	49794188	T	A	-	-	-	-	-	-	39	0	0	43	25	58.13953488	0	0	NA	0	0	NA	1.66E-46	1.761129122	1	0	0.238870878	2	0	0.761129122	unphased	2.503827714	1.421717285	1.761129122	0	0.995	0.005	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214192290	5	59255984	C	A	PDE4D	CCDS47032.1	r.?	-	-	intronic	52	0	0	51	18	35.29411765	0	0	NA	0	0	NA	9.10E-29	1.761129122	1	0	0.238870878	2	0	0.761129122	unphased	1.519970706	0.863066022	1.761129122	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214192444	5	62436064	G	A	-	-	-	-	-	-	34	0	0	58	11	18.96551724	0	0	NA	0	0	NA	8.96E-15	1.761129122	1	0	0.238870878	2	0	0.761129122	unphased	0.816765868	1.073097645	0.761129122	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214192525	5	64405500	T	A	-	-	-	-	-	-	39	0	0	64	30	46.875	0	0	NA	0	0	NA	1.28E-51	1.761129122	1	0	0.238870878	2	0	0.761129122	unphased	2.018711094	1.146259561	1.761129122	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214192592	5	66107394	G	A	MAST4	CCDS47224.1	r.?	-	-	intronic	32	0	0	48	22	45.83333333	0	0	NA	0	0	NA	5.76E-38	1.761129122	1	0	0.238870878	2	0	0.761129122	unphased	1.973850848	1.120787126	1.761129122	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214192940	5	74447583	C	A	ANKRD31	CCDS47233.1	r.?	-	-	intronic	31	0	0	57	24	42.10526316	0	0	NA	0	0	NA	3.83E-40	1.754521149	1	0	0.245478851	2	0	0.754521149	unphased	1.810516082	1.031914653	1.754521149	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214193347	5	82994849	T	A	HAPLN1	CCDS4061.1	r.?	-	-	intronic	45	0	0	50	10	20	0	0	NA	0	0	NA	8.36E-14	1.754521149	1	0	0.245478851	2	0	0.754521149	unphased	0.859995139	1.139789309	0.754521149	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214193521	5	86478168	T	A	-	-	-	-	-	-	28	0	0	69	30	43.47826087	0	0	NA	0	0	NA	2.44E-50	1.754521149	1	0	0.245478851	2	0	0.754521149	unphased	1.86955465	1.065564043	1.754521149	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214193934	5	97193184	C	A	-	-	-	-	-	-	33	0	0	47	17	36.17021277	0	0	NA	0	0	NA	1.81E-27	1.754521149	1	0	0.245478851	2	0	0.754521149	unphased	1.555310357	0.886458598	1.754521149	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214194156	5	100965186	T	A	-	-	-	-	-	-	24	0	0	50	23	46	0	0	NA	0	0	NA	1.13E-39	1.754521149	1	0	0.245478851	2	0	0.754521149	unphased	1.977988819	1.127366758	1.754521149	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214194204	5	101993946	C	A	-	-	-	-	-	-	13	0	0	28	4	14.28571429	0	0	NA	0	0	NA	1.16E-05	1.754521149	1	0	0.245478851	2	0	0.754521149	unphased	0.614282242	0.814135221	0.754521149	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214194252	5	102733558	G	A	-	-	-	-	-	-	43	0	0	44	12	27.27272727	0	0	NA	0	0	NA	4.44E-18	1.754521149	1	0	0.245478851	2	0	0.754521149	unphased	1.172720644	1.172720644	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214194429	5	106655608	C	A	-	-	-	-	-	-	36	0	0	72	30	41.66666667	0	0	NA	0	0	NA	1.25E-49	1.754521149	1	0	0.245478851	2	0	0.754521149	unphased	1.791656539	1.021165542	1.754521149	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214195029	5	120536264	G	A	-	-	-	-	-	-	33	0	0	59	8	13.55932203	0	0	NA	0	0	NA	6.90E-10	1.788223154	1	0	0.211776846	2	0	0.788223154	unphased	0.587617315	0.745496135	0.788223154	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214195111	5	122151371	G	A	SNX2	CCDS34217.1	r.?	-	-	intronic	34	0	0	46	13	28.26086957	0	0	NA	0	0	NA	1.07E-19	1.788223154	1	0	0.211776846	2	0	0.788223154	unphased	1.224735002	1.224735002	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214196082	5	143321326	T	A	-	-	-	-	-	-	32	0	0	56	12	21.42857143	0	0	NA	0	0	NA	1.11E-16	1.788223154	1	0	0.211776846	2	0	0.788223154	unphased	0.928645221	0.928645221	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214196296	5	147702595	G	A	SPINK9	CCDS44375.1	r.?	-	-	intronic	31	0	0	61	22	36.06557377	75	1	1.333333333	64	26	40.625	4.38E-35	1.788223154	1	0	0.211776846	2	0	0.788223154	unphased	1.562965728	0.874032821	1.788223154	0	1	0	2	1	7.46E-43	0.313356907	YES	1_1	somatic	custom.pulldown.HiSeq
1352322	PD9768b	1214196468	5	151444406	G	A	-	-	-	-	-	-	20	0	0	59	6	10.16949153	196	1	0.510204082	131	8	6.106870229	5.61E-07	1.788223154	1	0	0.211776846	2	0	0.788223154	unphased	0.440712986	0.559122102	0.788223154	0.04125	0.95875	0	2	1	3.91E-07	0.625610357	YES	1_1	somatic	custom.pulldown.HiSeq
1352322	PD9768b	1214196474	5	151520450	G	A	-	-	-	-	-	-	44	0	0	58	23	39.65517241	0	0	NA	0	0	NA	8.87E-38	1.788223154	1	0	0.211776846	2	0	0.788223154	unphased	1.718527364	0.961025116	1.788223154	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214196524	5	152840965	T	A	-	-	-	-	-	-	23	0	0	49	16	32.65306122	0	0	NA	0	0	NA	4.37E-25	1.788223154	1	0	0.211776846	2	0	0.788223154	unphased	1.415078432	1.415078432	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214196747	5	157361853	C	A	-	-	-	-	-	-	31	0	0	57	33	57.89473684	0	0	NA	0	0	NA	7.79E-61	1.788223154	1	0	0.211776846	2	0	0.788223154	unphased	2.5089713	1.403052686	1.788223154	0	0.99375	0.00625	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214196891	5	160763097	G	A	GABRB2	CCDS4355.1	r.?	-	-	intronic	34	1	2.941176471	59	15	25.42372881	0	0	NA	0	0	NA	9.90E-22	1.788223154	1	0	0.211776846	2	0	0.788223154	unphased	1.101782466	1.101782466	1	0	1	0	2	0.156694864	1	1	NA	NA	NA	NA
1352322	PD9768b	1214197024	5	163575591	G	A	-	-	-	-	-	-	30	0	0	34	10	29.41176471	0	0	NA	0	0	NA	1.15E-15	1.788223154	1	0	0.211776846	2	0	0.788223154	unphased	1.274611088	1.274611088	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214197672	5	172846342	C	A	-	-	-	-	-	-	33	0	0	90	27	30	0	0	NA	0	0	NA	3.78E-40	4.20005043	4	0	0.79994957	4	1	0.20005043	unphased	2.023651493	1.011825746	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214197795	5	174195482	T	A	-	-	-	-	-	-	21	0	0	65	40	61.53846154	0	0	NA	0	0	NA	5.25E-75	4.20005043	4	0	0.79994957	4	1	0.20005043	unphased	4.151079985	1.037769996	4	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214197802	5	174349797	G	A	-	-	-	-	-	-	8	0	0	87	12	13.79310345	0	0	NA	0	0	NA	3.06E-14	4.20005043	4	0	0.79994957	4	1	0.20005043	unphased	0.930414479	0.930414479	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214197832	5	174744391	C	A	-	-	-	-	-	-	31	0	0	62	36	58.06451613	0	0	NA	0	0	NA	2.69E-66	4.20005043	4	0	0.79994957	4	1	0.20005043	unphased	3.916744824	0.979186206	4	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214198598	6	323863	T	A	DUSP22	CCDS4468.1	r.?	-	-	intronic	73	0	0	150	24	16	0	0	NA	2	0	0	1.26E-28	4	2	2	1	NA	NA	NA	unphased	1.047272727	1.047272727	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214198710	6	1316715	G	A	FOXQ1	CCDS4471.1	r.?	-	-	downstream	8	0	0	38	6	15.78947368	0	0	NA	0	0	NA	3.76E-08	4	2	2	1	NA	NA	NA	unphased	1.033492823	1.033492823	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214198716	6	1400422	T	A	FOXF2	CCDS4472.1	r.?	-	-	downstream	12	0	0	74	9	12.16216216	0	0	NA	0	0	NA	1.61E-10	4	2	2	1	NA	NA	NA	unphased	0.796068796	0.796068796	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214199317	6	8692754	G	A	AL135912.1	ENST00000498984	r.?	-	-	intronic	33	0	0	75	24	32	0	0	NA	0	0	NA	1.20E-36	3.560177833	2	1	0.439822167	2	2	0.560177833	unphased	1.953802361	0.97690118	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214199823	6	14895769	G	A	-	-	-	-	-	-	20	0	0	62	6	9.677419355	0	0	NA	0	0	NA	7.56E-07	3.560177833	2	1	0.439822167	2	2	0.560177833	unphased	0.590867649	1.054785847	0.560177833	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214200460	6	21311364	C	A	-	-	-	-	-	-	15	0	0	69	18	26.08695652	0	0	NA	0	0	NA	5.16E-26	3.560177833	2	1	0.439822167	2	2	0.560177833	unphased	1.592773664	1.106229436	1.439822167	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214200667	6	23410335	G	A	-	-	-	-	-	-	18	0	0	76	9	11.84210526	0	0	NA	0	0	NA	2.06E-10	3.560177833	2	1	0.439822167	2	2	0.560177833	unphased	0.723035413	0.723035413	1	0.00375	0.99625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214200997	6	26877950	G	A	ENSG00000214801	ENST00000383335	r.?	-	-	intronic	7	0	0	28	6	21.42857143	0	0	NA	0	0	NA	5.36E-09	3.560177833	2	1	0.439822167	2	2	0.560177833	unphased	1.308349795	1.308349795	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214202522	6	41548805	G	A	FOXP4	CCDS34447.1	r.?	-	-	intronic	14	0	0	84	27	32.14285714	0	0	NA	0	0	NA	4.25E-41	3.560177833	2	1	0.439822167	2	2	0.560177833	unphased	1.962524693	0.981262346	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214202528	6	41611388	T	A	MDFI	CCDS4857.1	r.?	-	-	intronic	11	0	0	39	6	15.38461538	0	0	NA	0	0	NA	4.43E-08	3.560177833	2	1	0.439822167	2	2	0.560177833	unphased	0.939328058	0.939328058	1	0.005	0.995	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214202657	6	42859488	G	A	RPL7L1	CCDS4873.1	r.?	-	-	downstream	21	0	0	53	13	24.52830189	0	0	NA	0	0	NA	8.53E-19	3.560177833	2	1	0.439822167	2	2	0.560177833	unphased	1.497607942	1.497607942	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214202658	6	42871376	G	A	-	-	-	-	-	-	24	0	0	72	18	25	0	0	NA	0	0	NA	1.22E-25	3.560177833	2	1	0.439822167	2	2	0.560177833	unphased	1.526408095	1.060136543	1.439822167	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214202700	6	43240726	C	A	TTBK1	CCDS34455.1	r.?	-	-	intronic	38	0	0	68	19	27.94117647	0	0	NA	0	0	NA	5.06E-28	3.560177833	2	1	0.439822167	2	2	0.560177833	unphased	1.705985517	0.852992759	2	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214202826	6	44693720	G	A	-	-	-	-	-	-	12	0	0	65	10	15.38461538	0	0	NA	0	0	NA	1.36E-12	3.560177833	2	1	0.439822167	2	2	0.560177833	unphased	0.939328058	0.939328058	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214203230	6	51769021	G	A	PKHD1	CCDS4935.1	r.?	-	-	intronic	42	0	0	65	6	9.230769231	0	0	NA	0	0	NA	1.00E-06	3.560177833	2	1	0.439822167	2	2	0.560177833	unphased	0.563596835	1.006103423	0.560177833	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214203471	6	55192433	C	A	GFRAL	CCDS4957.1	r.?	-	-	intronic	35	0	0	71	21	29.57746479	0	0	NA	0	0	NA	2.05E-31	3.560177833	2	1	0.439822167	2	2	0.560177833	unphased	1.805891267	0.902945633	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214203546	6	56821868	C	A	DST	CCDS47441.1	r.?	-	-	upstream	27	0	0	79	22	27.84810127	0	0	NA	0	0	NA	3.56E-32	3.560177833	2	1	0.439822167	2	2	0.560177833	unphased	1.700302688	0.850151344	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214203995	6	58484982	C	A	-	-	-	-	-	-	30	0	0	47	18	38.29787234	0	0	NA	0	0	NA	1.52E-29	3.560177833	2	1	0.439822167	2	2	0.560177833	unphased	2.338327294	1.169163647	2	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214204176	6	62299531	G	A	-	-	-	-	-	-	30	0	0	55	11	20	0	0	NA	0	0	NA	4.77E-15	3.560177833	2	1	0.439822167	2	2	0.560177833	unphased	1.221126476	1.221126476	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214204192	6	62719926	G	A	KHDRBS2	CCDS4963.1	r.?	-	-	intronic	30	0	0	52	11	21.15384615	0	0	NA	0	0	NA	2.44E-15	3.560177833	2	1	0.439822167	2	2	0.560177833	unphased	1.29157608	1.29157608	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214204206	6	63024623	C	A	-	-	-	-	-	-	35	0	0	35	12	34.28571429	0	0	NA	0	0	NA	1.83E-19	3.560177833	2	1	0.439822167	2	2	0.560177833	unphased	2.093359672	1.046679836	2	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214204234	6	63409812	C	A	-	-	-	-	-	-	32	0	0	60	7	11.66666667	0	0	NA	0	0	NA	2.39E-08	3.560177833	2	1	0.439822167	2	2	0.560177833	unphased	0.712323777	1.271602937	0.560177833	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214204378	6	66115134	T	A	EYS	CCDS47445.1	r.989a>u	c.989A>T	p.E330V	missense	36	0	0	54	14	25.92592593	88	0	0	122	42	34.42622951	1.64E-20	2.563226083	1	1	0.436773917	2	1	0.563226083	unphased	1.324472756	1.324472756	1	0	0.9975	0.0025	2	1	1.51E-64	1	YES	1_1	somatic	custom.pulldown.HiSeq
1352322	PD9768b	1214204820	6	73585909	G	A	KCNQ5	CCDS4976.1	r.?	-	-	intronic	44	0	0	55	10	18.18181818	0	0	NA	0	0	NA	2.33E-13	2.563226083	1	1	0.436773917	2	1	0.563226083	unphased	0.928851023	0.928851023	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214204909	6	75230405	T	A	-	-	-	-	-	-	29	0	0	57	10	17.54385965	0	0	NA	0	0	NA	3.40E-13	2.563226083	1	1	0.436773917	2	1	0.563226083	unphased	0.896259759	0.896259759	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214204920	6	75414368	G	A	-	-	-	-	-	-	34	0	0	58	16	27.5862069	0	0	NA	0	0	NA	1.00E-23	2.563226083	1	1	0.436773917	2	1	0.563226083	unphased	1.409291208	1.409291208	1	0	0.995	0.005	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214204990	6	76754409	G	A	IMPG1	CCDS4985.1	r.?	-	-	intronic	33	0	0	72	18	25	0	0	NA	0	0	NA	1.22E-25	2.563226083	1	1	0.436773917	2	1	0.563226083	unphased	1.277170157	1.277170157	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214205149	6	79450875	G	A	-	-	-	-	-	-	23	0	0	54	11	20.37037037	0	0	NA	0	0	NA	3.84E-15	2.563226083	1	1	0.436773917	2	1	0.563226083	unphased	1.040657165	1.040657165	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214205693	6	88249737	C	A	RARS2	CCDS5011.1	r.?	-	-	intronic	39	0	0	69	27	39.13043478	0	0	NA	0	0	NA	6.80E-44	2.563226083	1	1	0.436773917	2	1	0.563226083	unphased	1.999048942	1.278797074	1.563226083	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214205762	6	89248424	T	A	-	-	-	-	-	-	25	0	0	64	9	14.0625	0	0	NA	0	0	NA	4.20E-11	2.563226083	1	1	0.436773917	2	1	0.563226083	unphased	0.718408213	1.275523693	0.563226083	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214205764	6	89280238	T	A	-	-	-	-	-	-	37	0	0	62	14	22.58064516	0	0	NA	0	0	NA	1.42E-19	2.563226083	1	1	0.436773917	2	1	0.563226083	unphased	1.153573045	1.153573045	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214205909	6	91778724	C	A	-	-	-	-	-	-	24	0	0	47	12	25.53191489	0	0	NA	0	0	NA	1.09E-17	2.563226083	1	1	0.436773917	2	1	0.563226083	unphased	1.30434399	1.30434399	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214205953	6	92620023	G	A	-	-	-	-	-	-	40	0	0	46	10	21.73913043	0	0	NA	0	0	NA	3.38E-14	2.563226083	1	1	0.436773917	2	1	0.563226083	unphased	1.110582745	1.110582745	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214205978	6	93140902	T	A	-	-	-	-	-	-	37	0	0	47	11	23.40425532	0	0	NA	0	0	NA	7.21E-16	2.563226083	1	1	0.436773917	2	1	0.563226083	unphased	1.195648658	1.195648658	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214206022	6	93779708	G	A	-	-	-	-	-	-	20	0	0	67	18	26.86567164	0	0	NA	0	0	NA	2.83E-26	2.563226083	1	1	0.436773917	2	1	0.563226083	unphased	1.372481363	1.372481363	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214206172	6	96655303	C	A	FUT9	CCDS5033.1	r.?	-	-	downstream	30	0	0	70	9	12.85714286	1	0	0	0	0	NA	9.65E-11	2.563226083	1	1	0.436773917	2	1	0.563226083	unphased	0.656830367	1.166193091	0.563226083	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214206210	6	97522210	G	A	KLHL32	CCDS5038.1	r.?	-	-	intronic	38	0	0	57	20	35.0877193	0	0	NA	0	0	NA	9.67E-32	2.563226083	1	1	0.436773917	2	1	0.563226083	unphased	1.792519519	1.146679638	1.563226083	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214206454	6	102043888	T	A	GRIK2	CCDS5049.1	r.?	-	-	intronic	32	0	0	46	15	32.60869565	0	0	NA	0	0	NA	1.35E-23	2.563226083	1	1	0.436773917	2	1	0.563226083	unphased	1.665874118	1.065664229	1.563226083	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214206581	6	104893510	G	A	-	-	-	-	-	-	42	0	0	64	12	18.75	0	0	NA	0	0	NA	6.30E-16	2.563226083	1	1	0.436773917	2	1	0.563226083	unphased	0.957877618	0.957877618	1	0.00125	0.9975	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214206620	6	106059950	T	A	-	-	-	-	-	-	39	0	0	50	17	34	0	0	NA	0	0	NA	6.43E-27	2.563226083	1	1	0.436773917	2	1	0.563226083	unphased	1.736951414	1.111132569	1.563226083	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214207228	6	116513515	G	A	NT5DC1	CCDS5104.1	r.?	-	-	intronic	28	0	0	68	8	11.76470588	0	0	NA	0	0	NA	2.21E-09	2.563226083	1	1	0.436773917	2	1	0.563226083	unphased	0.60102125	1.067104789	0.563226083	0.00375	0.995	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214207350	6	118211421	T	A	-	-	-	-	-	-	36	0	0	83	28	33.73493976	0	0	NA	0	0	NA	2.91E-43	3.675145481	2	1	0.324854519	2	2	0.675145481	unphased	2.098515671	1.049257836	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214207839	6	124204841	G	A	NKAIN2	CCDS34526.1	r.?	-	-	intronic	13	0	0	63	18	28.57142857	0	0	NA	0	0	NA	7.98E-27	3.675145481	2	1	0.324854519	2	2	0.675145481	unphased	1.777314293	0.888657147	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214207849	6	124542102	C	A	NKAIN2	CCDS34526.1	r.?	-	-	intronic	41	0	0	56	18	32.14285714	0	0	NA	0	0	NA	6.76E-28	3.675145481	2	1	0.324854519	2	2	0.675145481	unphased	1.99947858	0.99973929	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214208186	6	130022177	C	A	ARHGAP18	CCDS34535.1	r.?	-	-	intronic	32	0	0	73	11	15.06849315	0	0	NA	0	0	NA	1.31E-13	3.675145481	2	1	0.324854519	2	2	0.675145481	unphased	0.937350689	0.937350689	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214208196	6	130092785	C	A	-	-	-	-	-	-	38	0	0	84	5	5.952380952	0	0	NA	0	0	NA	6.95E-05	3.675145481	2	1	0.324854519	2	2	0.675145481	unphased	0.370273811	0.548435592	0.675145481	0.015	0.985	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214208323	6	131881093	G	A	-	-	-	-	-	-	19	0	0	76	16	21.05263158	0	0	NA	0	0	NA	1.25E-21	3.675145481	2	1	0.324854519	2	2	0.675145481	unphased	1.309600005	1.309600005	1	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214208597	6	135689136	C	A	AHI1	CCDS47483.1	r.?	-	-	intronic	18	0	0	85	24	28.23529412	0	0	NA	0	0	NA	3.98E-35	3.675145481	2	1	0.324854519	2	2	0.675145481	unphased	1.756404713	0.878202357	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214209019	6	142824027	C	A	-	-	-	-	-	-	35	0	0	83	26	31.3253012	0	0	NA	0	0	NA	2.73E-39	3.675145481	2	1	0.324854519	2	2	0.675145481	unphased	1.948621695	0.974310847	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214209134	6	144531480	T	A	-	-	-	-	-	-	21	0	0	79	14	17.72151899	0	0	NA	0	0	NA	5.60E-18	3.675145481	2	1	0.324854519	2	2	0.675145481	unphased	1.102384815	1.102384815	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214209203	6	145766472	C	A	-	-	-	-	-	-	38	0	0	72	7	9.722222222	0	0	NA	0	0	NA	8.66E-08	3.675145481	2	1	0.324854519	2	2	0.675145481	unphased	0.604780558	0.895778133	0.675145481	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214209815	6	153696356	T	A	-	-	-	-	-	-	27	0	0	62	10	16.12903226	0	0	NA	0	0	NA	8.29E-13	3.675145481	2	1	0.324854519	2	2	0.675145481	unphased	1.003322585	1.003322585	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214209816	6	153699580	T	A	-	-	-	-	-	-	39	0	0	92	6	6.52173913	0	0	NA	0	0	NA	7.71E-06	3.675145481	2	1	0.324854519	2	2	0.675145481	unphased	0.405691306	0.600894648	0.675145481	0.00625	0.99375	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214210209	6	157751399	C	A	-	-	-	-	-	-	32	0	0	70	21	30	0	0	NA	0	0	NA	1.45E-31	3.675145481	2	1	0.324854519	2	2	0.675145481	unphased	1.866180008	0.933090004	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214210354	6	159382429	G	A	-	-	-	-	-	-	29	0	0	68	21	30.88235294	183	0	0	215	34	15.81395349	7.15E-32	4.7421074	2	2	0.2578926	3	2	0.7421074	unphased	2.250570601	1.1252853	2	0	0.99875	0.00125	2	1	1.04E-39	1	YES	1_1	somatic	custom.pulldown.HiSeq
1352322	PD9768b	1214210508	6	161142275	G	A	PLG	CCDS5279.1	r.?	-	-	intronic	29	0	0	79	11	13.92405063	0	0	NA	0	0	NA	3.23E-13	4.7421074	2	2	0.2578926	3	2	0.7421074	unphased	1.014723815	1.014723815	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214210552	6	161598283	C	A	AGPAT4	CCDS5280.1	r.?	-	-	intronic	38	0	0	72	18	25	0	0	NA	0	0	NA	1.22E-25	4.7421074	2	2	0.2578926	3	2	0.7421074	unphased	1.821890486	1.045796882	1.7421074	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214210685	6	162966875	G	A	PARK2	CCDS5281.1	r.?	-	-	intronic	18	0	0	68	14	20.58823529	0	0	NA	0	0	NA	5.84E-19	4.7421074	2	2	0.2578926	3	2	0.7421074	unphased	1.500380401	1.500380401	1	0	0.99625	0.00375	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214210844	6	164935061	T	A	ENSG00000237744	ENST00000425920	r.?	-	-	intronic	36	0	0	64	20	31.25	0	0	NA	0	0	NA	1.52E-30	4.7421074	2	2	0.2578926	3	2	0.7421074	unphased	2.277363108	1.138681554	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214210882	6	165376441	G	A	-	-	-	-	-	-	20	0	0	84	6	7.142857143	0	0	NA	0	0	NA	4.55E-06	4.7421074	2	2	0.2578926	3	2	0.7421074	unphased	0.520540139	0.701435047	0.7421074	0.00625	0.99375	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214210883	6	165379539	T	A	-	-	-	-	-	-	30	0	0	58	14	24.13793103	0	0	NA	0	0	NA	5.04E-20	4.7421074	2	2	0.2578926	3	2	0.7421074	unphased	1.759066676	1.00973492	1.7421074	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214210933	6	166101437	G	A	-	-	-	-	-	-	10	0	0	68	5	7.352941176	0	0	NA	0	0	NA	2.51E-05	4.7421074	2	2	0.2578926	3	2	0.7421074	unphased	0.535850143	0.72206549	0.7421074	0.00375	0.99625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214211303	6	169773608	G	A	-	-	-	-	-	-	27	0	0	69	19	27.53623188	0	0	NA	0	0	NA	6.95E-28	4.7421074	2	2	0.2578926	3	2	0.7421074	unphased	2.006719956	1.003359978	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214211471	6	171006892	T	A	-	-	-	-	-	-	25	0	0	38	4	10.52631579	0	0	NA	1	0	0	4.03E-05	4.7421074	2	2	0.2578926	3	2	0.7421074	unphased	0.767111784	1.033693754	0.7421074	0.0025	0.99625	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214211494	7	202711	G	A	FAM20C	CCDS47522.1	r.?	-	-	intronic	13	0	0	42	6	14.28571429	0	0	NA	0	0	NA	7.02E-08	1.755712721	1	0	0.244287279	2	0	0.755712721	unphased	0.614452467	0.813076781	0.755712721	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214211521	7	799300	G	A	HEATR2	CCDS34580.1	r.?	-	-	intronic	22	0	0	52	6	11.53846154	208	0	0	174	4	2.298850575	2.61E-07	1.755712721	1	0	0.244287279	2	0	0.755712721	unphased	0.496288531	0.656715862	0.755712721	0.01	0.99	0	2	1	0.011783506	1	YES	1_1	somatic	custom.pulldown.HiSeq
1352322	PD9768b	1214211689	7	3611068	G	A	SDK1	CCDS34590.1	r.?	-	-	intronic	33	0	0	64	31	48.4375	0	0	NA	0	0	NA	7.05E-54	1.755712721	1	0	0.244287279	2	0	0.755712721	unphased	2.083377895	1.186628012	1.755712721	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214211779	7	5203031	C	A	-	-	-	-	-	-	20	0	0	57	9	15.78947368	0	0	NA	0	0	NA	1.42E-11	1.755712721	1	0	0.244287279	2	0	0.755712721	unphased	0.679131674	0.898663811	0.755712721	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214212245	7	13935953	C	A	ETV1	ENST00000430479	r.?	-	-	intronic	36	0	0	55	24	43.63636364	0	0	NA	0	0	NA	1.28E-40	1.755712721	1	0	0.244287279	2	0	0.755712721	unphased	1.876872989	1.069009165	1.755712721	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214212437	7	18263926	C	A	HDAC9	ENST00000433709	r.?	-	-	intronic	33	0	0	69	28	40.57971014	0	0	NA	0	0	NA	5.13E-46	1.755712721	1	0	0.244287279	2	0	0.755712721	unphased	1.745401209	0.99412688	1.755712721	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214212844	7	25754872	C	A	-	-	-	-	-	-	30	0	0	52	28	53.84615385	0	0	NA	0	0	NA	1.41E-50	1.755712721	1	0	0.244287279	2	0	0.755712721	unphased	2.316013143	1.319129899	1.755712721	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214212982	7	28334834	G	A	CREB5	CCDS43562.1	r.?	-	-	upstream	33	0	0	44	20	45.45454545	0	0	NA	0	0	NA	1.50E-34	1.755712721	1	0	0.244287279	2	0	0.755712721	unphased	1.95507603	1.113551213	1.755712721	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214213130	7	30972355	G	A	AC006978.1	ENST00000507825	r.?	-	-	intronic	15	0	0	50	14	28	0	0	NA	0	0	NA	4.84E-21	1.755712721	1	0	0.244287279	2	0	0.755712721	unphased	1.204326834	1.204326834	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214213342	7	35777775	C	A	-	-	-	-	-	-	21	0	0	62	7	11.29032258	0	0	NA	0	0	NA	3.02E-08	1.755712721	1	0	0.244287279	2	0	0.755712721	unphased	0.485615659	0.64259294	0.755712721	0.00875	0.99125	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214213553	7	39682301	G	A	RALA	CCDS5460.1	r.?	-	-	intronic	31	0	0	62	25	40.32258065	0	0	NA	0	0	NA	3.68E-41	1.755712721	1	0	0.244287279	2	0	0.755712721	unphased	1.73434164	0.987827689	1.755712721	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214214024	7	48886886	C	A	-	-	-	-	-	-	33	0	0	33	15	45.45454545	0	0	NA	0	0	NA	2.91E-26	1.755712721	1	0	0.244287279	2	0	0.755712721	unphased	1.95507603	1.113551213	1.755712721	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214214110	7	50823007	G	A	GRB10	CCDS43583.1	r.?	-	-	intronic	10	0	0	50	16	32	0	0	NA	0	0	NA	6.40E-25	1.755712721	1	0	0.244287279	2	0	0.755712721	unphased	1.376373525	1.376373525	1	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214214331	7	53631068	C	A	-	-	-	-	-	-	10	0	0	51	20	39.21568627	0	0	NA	0	0	NA	6.38E-33	1.755712721	1	0	0.244287279	2	0	0.755712721	unphased	1.686732261	0.960710851	1.755712721	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214214458	7	55909784	G	A	Sep-14	CCDS5519.2	r.?	-	-	intronic	18	0	0	61	13	21.31147541	0	0	NA	0	0	NA	6.41E-18	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214216016	7	58006094	C	A	-	-	-	-	-	-	31	0	0	36	8	22.22222222	0	0	NA	0	0	NA	1.04E-11	4	2	2	1	NA	NA	NA	unphased	1.454545455	1.454545455	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214216619	7	61574170	G	A	-	-	-	-	-	-	19	0	0	45	6	13.33333333	0	0	NA	0	0	NA	1.08E-07	4	2	2	1	NA	NA	NA	unphased	0.872727273	0.872727273	1	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214217103	7	61768018	G	A	-	-	-	-	-	-	40	0	0	76	17	22.36842105	0	0	NA	0	0	NA	2.21E-23	4	2	2	1	NA	NA	NA	unphased	1.464114833	1.464114833	1	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214218282	7	62721614	C	A	-	-	-	-	-	-	31	0	0	63	21	33.33333333	0	0	NA	0	0	NA	1.08E-32	4	2	2	1	NA	NA	NA	unphased	2.181818182	1.090909091	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214218422	7	63909091	G	A	-	-	-	-	-	-	27	0	0	68	11	16.17647059	0	0	NA	0	0	NA	5.76E-14	4	2	2	1	NA	NA	NA	unphased	1.058823529	1.058823529	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214219199	7	68093199	C	A	-	-	-	-	-	-	19	0	0	69	20	28.98550725	0	0	NA	0	0	NA	8.73E-30	4	2	2	1	NA	NA	NA	unphased	1.897233202	0.948616601	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214219200	7	68093200	C	A	-	-	-	-	-	-	20	0	0	70	20	28.57142857	0	0	NA	0	0	NA	1.22E-29	4	2	2	1	NA	NA	NA	unphased	1.87012987	0.935064935	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214219353	7	69583848	C	A	AUTS2	CCDS5539.1	r.?	-	-	intronic	26	0	0	66	6	9.090909091	0	0	NA	0	0	NA	1.10E-06	4	2	2	1	NA	NA	NA	unphased	0.595041322	0.595041322	1	0.0175	0.9825	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214219433	7	70599007	G	A	WBSCR17	CCDS5540.1	r.?	-	-	intronic	30	0	0	65	15	23.07692308	0	0	NA	0	0	NA	5.00E-21	3	2	1	1	NA	NA	NA	unphased	1.27972028	1.27972028	1	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214219781	7	73672093	G	A	RFC2	CCDS5568.1	r.?	-	-	upstream	19	0	0	46	13	28.26086957	0	0	NA	0	0	NA	1.07E-19	3	2	1	1	NA	NA	NA	unphased	1.567193676	1.567193676	1	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214220086	7	77569983	T	A	PHTF2	CCDS47621.1	r.1972+7u>a	c.1770+7T>A	p.?	splice region	30	0	0	63	6	9.523809524	82	0	0	141	23	16.31205674	8.32E-07	3	2	1	1	NA	NA	NA	unphased	0.528138528	0.528138528	1	0.03625	0.96375	0	2	1	1.06E-27	1	YES	1_1	somatic	custom.pulldown.HiSeq
1352322	PD9768b	1214220121	7	77938740	G	A	MAGI2	CCDS5594.1	r.?	-	-	intronic	32	0	0	74	8	10.81081081	0	0	NA	0	0	NA	4.39E-09	3	2	1	1	NA	NA	NA	unphased	0.5995086	0.5995086	1	0.01875	0.98125	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214220174	7	78596344	C	A	MAGI2	CCDS5594.1	r.?	-	-	intronic	48	0	0	81	23	28.39506173	0	0	NA	0	0	NA	8.61E-34	3	2	1	1	NA	NA	NA	unphased	1.574635241	0.787317621	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214220207	7	79224339	T	A	-	-	-	-	-	-	28	0	0	52	15	28.84615385	0	0	NA	0	0	NA	1.15E-22	3	2	1	1	NA	NA	NA	unphased	1.59965035	0.799825175	2	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214220370	7	81925763	C	A	CACNA2D1	CCDS5598.1	r.?	-	-	intronic	27	0	0	68	9	13.23529412	0	0	NA	0	0	NA	7.38E-11	3	2	1	1	NA	NA	NA	unphased	0.733957219	0.733957219	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214220400	7	82316749	G	A	-	-	-	-	-	-	11	0	0	72	8	11.11111111	0	0	NA	0	0	NA	3.52E-09	3	2	1	1	NA	NA	NA	unphased	0.616161616	0.616161616	1	0.02125	0.97875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214220509	7	84316327	T	A	-	-	-	-	-	-	43	0	0	59	9	15.25423729	0	0	NA	0	0	NA	1.96E-11	3	2	1	1	NA	NA	NA	unphased	0.845916795	0.845916795	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214220513	7	84353487	G	A	-	-	-	-	-	-	39	0	0	79	32	40.50632911	0	0	NA	0	0	NA	2.44E-52	3	2	1	1	NA	NA	NA	unphased	2.246260069	1.123130035	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214220632	7	86670526	C	A	KIAA1324L	CCDS47632.1	r.?	-	-	intronic	30	0	0	73	10	13.69863014	0	0	NA	0	0	NA	4.56E-12	3	2	1	1	NA	NA	NA	unphased	0.759651308	0.759651308	1	0.00375	0.99625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214220693	7	87766497	G	A	ADAM22	CCDS43609.1	r.?	-	-	intronic	25	0	0	62	6	9.677419355	0	0	NA	0	0	NA	7.56E-07	3	2	1	1	NA	NA	NA	unphased	0.536656891	0.536656891	1	0.03625	0.96375	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214220718	7	88281797	G	A	-	-	-	-	-	-	42	0	0	57	18	31.57894737	0	0	NA	0	0	NA	9.84E-28	3	2	1	1	NA	NA	NA	unphased	1.751196172	0.875598086	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214221162	7	96285315	G	A	SHFM1	ENST00000444799	r.?	-	-	intronic	28	0	0	69	12	17.39130435	0	0	NA	0	0	NA	1.65E-15	3	2	1	1	NA	NA	NA	unphased	0.964426877	0.964426877	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214221193	7	96682670	C	A	-	-	-	-	-	-	31	0	0	66	20	30.3030303	0	0	NA	0	0	NA	3.11E-30	3	2	1	1	NA	NA	NA	unphased	1.680440771	0.840220386	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214221560	7	100823877	C	A	C7orf52	CCDS5713.1	r.?	-	-	upstream	7	0	0	62	15	24.19354839	0	0	NA	0	0	NA	2.28E-21	3	2	1	1	NA	NA	NA	unphased	1.341642229	1.341642229	1	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214221616	7	101502019	C	A	CUX1	CCDS5721.1	r.?	-	-	intronic	20	0	0	59	14	23.72881356	0	0	NA	0	0	NA	6.58E-20	3	2	1	1	NA	NA	NA	unphased	1.31587057	1.31587057	1	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214221702	7	102331044	T	A	-	-	-	-	-	-	8	0	0	20	3	15	0	0	NA	0	0	NA	0.0001337	3	2	1	1	NA	NA	NA	unphased	0.831818182	0.831818182	1	0.005	0.995	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214222342	7	112071035	C	A	IFRD1	CCDS34736.1	r.?	-	-	intronic	37	0	0	72	14	19.44444444	8	0	0	6	1	16.66666667	1.39E-18	3	2	1	1	NA	NA	NA	unphased	1.078282828	1.078282828	1	0	0.99875	0.00125	2	1	0.029627491	1	NA	NA	NA	NA
1352322	PD9768b	1214222367	7	112735583	G	A	-	-	-	-	-	-	40	0	0	72	7	9.722222222	189	0	0	133	8	6.015037594	8.66E-08	3	2	1	1	NA	NA	NA	unphased	0.539141414	0.539141414	1	0.0525	0.9475	0	2	1	4.39E-07	1	YES	1_1	somatic	custom.pulldown.HiSeq
1352322	PD9768b	1214222499	7	114949853	T	A	-	-	-	-	-	-	20	0	0	62	15	24.19354839	0	0	NA	0	0	NA	2.28E-21	3	2	1	1	NA	NA	NA	unphased	1.341642229	1.341642229	1	0	0.99625	0.00375	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214222760	7	119374473	C	A	-	-	-	-	-	-	24	0	0	48	8	16.66666667	0	0	NA	0	0	NA	1.23E-10	3	2	1	1	NA	NA	NA	unphased	0.924242424	0.924242424	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214222840	7	120826950	G	A	C7orf58	CCDS34739.1	r.?	-	-	intronic	46	0	0	58	18	31.03448276	0	0	NA	0	0	NA	1.42E-27	3	2	1	1	NA	NA	NA	unphased	1.721003135	0.860501567	2	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214222968	7	123018394	G	A	-	-	-	-	-	-	39	0	0	56	6	10.71428571	0	0	NA	0	0	NA	4.09E-07	3	2	1	1	NA	NA	NA	unphased	0.594155844	0.594155844	1	0.01625	0.98375	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214223139	7	126011178	G	A	-	-	-	-	-	-	24	0	0	59	11	18.6440678	0	0	NA	0	0	NA	1.10E-14	3	2	1	1	NA	NA	NA	unphased	1.033898305	1.033898305	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214223163	7	126530919	G	A	GRM8	CCDS5794.1	r.?	-	-	intronic	35	0	0	64	10	15.625	0	0	NA	0	0	NA	1.16E-12	3	2	1	1	NA	NA	NA	unphased	0.866477273	0.866477273	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214223453	7	130575937	C	A	-	-	-	-	-	-	11	0	0	61	22	36.06557377	0	0	NA	0	0	NA	4.38E-35	3	2	1	1	NA	NA	NA	unphased	2	1	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214223505	7	131331799	G	A	-	-	-	-	-	-	14	0	0	53	12	22.64150943	0	0	NA	0	0	NA	5.39E-17	3	2	1	1	NA	NA	NA	unphased	1.255574614	1.255574614	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214224005	7	139002809	T	A	-	-	-	-	-	-	22	0	0	62	21	33.87096774	0	0	NA	0	0	NA	7.22E-33	3	2	1	1	NA	NA	NA	unphased	1.87829912	0.93914956	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214224057	7	139706599	G	A	TBXAS1	CCDS5855.1	r.?	-	-	intronic	12	0	0	40	6	15	0	0	NA	0	0	NA	5.18E-08	3	2	1	1	NA	NA	NA	unphased	0.831818182	0.831818182	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214224153	7	140972984	G	A	-	-	-	-	-	-	29	0	0	74	28	37.83783784	0	0	NA	0	0	NA	5.88E-45	3	2	1	1	NA	NA	NA	unphased	2.098280098	1.049140049	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214224422	7	142885215	T	A	TAS2R39	CCDS47729.1	r.?	-	-	downstream	19	0	0	54	19	35.18518519	0	0	NA	0	0	NA	2.97E-30	3	2	1	1	NA	NA	NA	unphased	1.951178451	0.975589226	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214224591	7	145049950	G	A	-	-	-	-	-	-	29	0	0	63	7	11.11111111	0	0	NA	0	0	NA	3.38E-08	3	2	1	1	NA	NA	NA	unphased	0.616161616	0.616161616	1	0.0125	0.9875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214224607	7	145339467	C	A	-	-	-	-	-	-	40	0	0	49	9	18.36734694	0	0	NA	0	0	NA	3.35E-12	3	2	1	1	NA	NA	NA	unphased	1.018552876	1.018552876	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214224632	7	145861145	G	A	CNTNAP2	CCDS5889.1	r.?	-	-	intronic	35	0	0	78	6	7.692307692	0	0	NA	0	0	NA	2.95E-06	3	2	1	1	NA	NA	NA	unphased	0.426573427	0.426573427	1	0.18875	0.81125	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214224671	7	146339055	T	A	CNTNAP2	CCDS5889.1	r.?	-	-	intronic	36	0	0	48	6	12.5	6	0	0	5	0	0	1.60E-07	3	2	1	1	NA	NA	NA	unphased	0.693181818	0.693181818	1	0.00875	0.99125	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214224699	7	146718259	G	A	CNTNAP2	CCDS5889.1	r.?	-	-	intronic	22	0	0	56	11	19.64285714	0	0	NA	0	0	NA	5.91E-15	3	2	1	1	NA	NA	NA	unphased	1.089285714	1.089285714	1	0.00125	0.9975	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214224711	7	146995197	G	A	CNTNAP2	CCDS5889.1	r.?	-	-	intronic	24	0	0	72	11	15.27777778	179	0	0	131	10	7.633587786	1.12E-13	3	2	1	1	NA	NA	NA	unphased	0.847222222	0.847222222	1	0.00125	0.99875	0	2	1	1.63E-09	1	YES	1_1	somatic	custom.pulldown.HiSeq
1352322	PD9768b	1214224735	7	147269992	G	A	CNTNAP2	CCDS5889.1	r.?	-	-	intronic	32	0	0	71	9	12.67605634	0	0	NA	0	0	NA	1.10E-10	3	2	1	1	NA	NA	NA	unphased	0.702944942	0.702944942	1	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214224757	7	147646211	T	A	CNTNAP2	CCDS5889.1	r.?	-	-	intronic	12	0	0	70	23	32.85714286	0	0	NA	0	0	NA	1.70E-35	3	2	1	1	NA	NA	NA	unphased	1.822077922	0.911038961	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214224968	7	150221336	T	A	GIMAP7	CCDS5903.1	r.?	-	-	downstream	17	0	0	53	19	35.8490566	0	0	NA	0	0	NA	1.93E-30	3	2	1	1	NA	NA	NA	unphased	1.987993139	0.993996569	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214225043	7	151520439	G	A	PRKAG2	CCDS43683.1	r.?	-	-	intronic	29	0	0	70	16	22.85714286	0	0	NA	0	0	NA	2.93E-22	3	2	1	1	NA	NA	NA	unphased	1.267532468	1.267532468	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214225537	7	154551609	G	A	DPP6	ENST00000404039	r.?	-	-	intronic	23	0	0	60	9	15	0	0	NA	0	0	NA	2.29E-11	3	2	1	1	NA	NA	NA	unphased	0.831818182	0.831818182	1	0.00375	0.99625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214225967	7	158754956	G	A	-	-	-	-	-	-	33	0	0	48	6	12.5	0	0	NA	0	0	NA	1.60E-07	3	2	1	1	NA	NA	NA	unphased	0.693181818	0.693181818	1	0.00625	0.99375	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214226289	8	2905142	G	A	CSMD1	ENST00000318252	r.?	-	-	intronic	32	0	0	63	24	38.0952381	0	0	NA	0	0	NA	7.74E-39	2.174127563	2	0	0.825872437	2	1	0.174127563	unphased	1.797936041	0.9846997	1.825872437	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214226303	8	3076371	G	A	CSMD1	ENST00000318252	r.?	-	-	intronic	15	0	0	34	8	23.52941176	0	0	NA	0	0	NA	6.32E-12	0.749246041	0	0	0.250753959	1	0	0.749246041	unphased	0.775223667	1.03467169	0.749246041	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214226320	8	3288136	C	A	CSMD1	ENST00000318252	r.?	-	-	intronic	31	0	0	38	10	26.31578947	0	0	NA	0	0	NA	4.06E-15	0.749246041	0	0	0.250753959	1	0	0.749246041	unphased	0.86702647	0.86702647	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214226397	8	4551095	C	A	-	-	-	-	-	-	31	0	0	49	14	28.57142857	0	0	NA	0	0	NA	3.50E-21	3	2	1	1	NA	NA	NA	unphased	1.584415584	0.792207792	2	0.00375	0.99625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214226426	8	5113479	G	A	-	-	-	-	-	-	36	0	0	59	18	30.50847458	0	0	NA	0	0	NA	2.03E-27	1.721104505	1	0	0.278895495	2	0	0.721104505	unphased	1.301662083	1.301662083	1	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214227012	8	13548959	T	A	-	-	-	-	-	-	34	0	0	53	23	43.39622642	0	0	NA	0	0	NA	6.43E-39	1.721104505	1	0	0.278895495	2	0	0.721104505	unphased	1.851525626	1.075777572	1.721104505	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214227113	8	15384622	G	A	-	-	-	-	-	-	32	0	0	55	23	41.81818182	0	0	NA	0	0	NA	1.91E-38	1.721104505	1	0	0.278895495	2	0	0.721104505	unphased	1.784197421	1.036658388	1.721104505	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214227341	8	19163148	C	A	-	-	-	-	-	-	34	0	0	33	14	42.42424242	0	0	NA	0	0	NA	4.57E-24	1.721104505	1	0	0.278895495	2	0	0.721104505	unphased	1.810055355	1.051682422	1.721104505	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214227354	8	19361666	C	A	CSGALNACT1	CCDS6010.1	r.?	-	-	intronic	11	0	0	53	21	39.62264151	0	0	NA	0	0	NA	1.30E-34	1.721104505	1	0	0.278895495	2	0	0.721104505	unphased	1.690523397	0.982231696	1.721104505	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214227858	8	28756136	G	A	HMBOX1	CCDS6071.1	r.?	-	-	intronic	29	0	0	45	22	48.88888889	0	0	NA	0	0	NA	8.79E-39	1.721104505	1	0	0.278895495	2	0	0.721104505	unphased	2.085873314	1.211938791	1.721104505	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214228257	8	36317486	G	A	-	-	-	-	-	-	27	0	0	45	18	40	0	0	NA	0	0	NA	5.76E-30	1.721104505	1	0	0.278895495	2	0	0.721104505	unphased	1.70662362	0.991586284	1.721104505	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214228803	8	41434002	G	A	AGPAT6	CCDS6117.1	r.?	-	-	upstream	7	0	0	67	9	13.43283582	0	0	NA	0	0	NA	6.43E-11	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	0.957329683	0.957329683	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214228923	8	42668311	G	A	-	-	-	-	-	-	15	0	0	53	19	35.8490566	0	0	NA	0	0	NA	1.93E-30	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	2.554886135	0.989754535	2.581333094	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214230403	8	55906683	T	A	-	-	-	-	-	-	44	0	0	77	17	22.07792208	0	0	NA	0	0	NA	2.82E-23	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	1.573446622	0.99501277	1.581333094	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214230404	8	55944035	G	A	-	-	-	-	-	-	36	0	0	71	21	29.57746479	0	0	NA	0	0	NA	2.05E-31	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	2.107923105	1.053961552	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214230619	8	58371021	G	A	-	-	-	-	-	-	41	0	0	94	36	38.29787234	0	0	NA	0	0	NA	1.36E-57	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	2.729408032	1.057363747	2.581333094	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214230730	8	59964022	G	A	TOX	CCDS34897.1	r.?	-	-	intronic	55	0	0	81	24	29.62962963	0	0	NA	0	0	NA	1.04E-35	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	2.111640782	1.055820391	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214231085	8	64406191	G	A	-	-	-	-	-	-	24	0	0	101	26	25.74257426	0	0	NA	0	0	NA	9.78E-37	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	1.8346186	0.9173093	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214231117	8	64909439	T	A	-	-	-	-	-	-	29	0	0	70	21	30	0	0	NA	0	0	NA	1.45E-31	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	2.138036292	1.069018146	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214231131	8	65052936	G	A	-	-	-	-	-	-	37	0	0	67	5	7.462686567	0	0	NA	0	0	NA	2.33E-05	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	0.531849824	0.914879661	0.581333094	0.00375	0.99625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214231184	8	65724940	C	A	-	-	-	-	-	-	38	0	0	66	16	24.24242424	0	0	NA	0	0	NA	1.03E-22	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	1.727706094	1.092563041	1.581333094	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214231513	8	69521495	C	A	C8orf34	CCDS6203.1	r.?	-	-	intronic	33	0	0	84	22	26.19047619	0	0	NA	0	0	NA	1.66E-31	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	1.86653962	0.93326981	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214231635	8	70789987	T	A	-	-	-	-	-	-	36	0	0	72	10	13.88888889	0	0	NA	0	0	NA	3.95E-12	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	0.989831617	0.989831617	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214231650	8	70864638	G	A	-	-	-	-	-	-	21	0	0	71	16	22.53521127	129	0	0	175	38	21.71428571	3.77E-22	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	1.606036651	1.015621982	1.581333094	0	1	0	2	1	7.99E-50	1	YES	1_1	somatic	custom.pulldown.HiSeq
1352322	PD9768b	1214231980	8	74141134	G	A	-	-	-	-	-	-	36	0	0	69	31	44.92753623	0	0	NA	0	0	NA	1.54E-52	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	3.201890099	1.240401755	2.581333094	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214232358	8	78587641	G	A	-	-	-	-	-	-	39	0	0	82	15	18.29268293	0	0	NA	0	0	NA	2.22E-19	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	1.303680666	1.303680666	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214232569	8	80935608	T	A	MRPS28	CCDS6226.1	r.?	-	-	intronic	36	0	0	43	7	16.27906977	0	0	NA	0	0	NA	2.15E-09	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	1.160174732	1.160174732	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214232646	8	81818408	G	A	AC012533.1	ENST00000501214	r.?	-	-	intronic	28	0	0	90	16	17.77777778	0	0	NA	0	0	NA	2.31E-20	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	1.266984469	1.266984469	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214232677	8	82408299	G	A	-	-	-	-	-	-	51	0	0	98	22	22.44897959	0	0	NA	0	0	NA	7.37E-30	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	1.599891103	1.011735673	1.581333094	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214233132	8	86858478	T	A	-	-	-	-	-	-	31	0	0	71	14	19.71830986	0	0	NA	0	0	NA	1.13E-18	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	1.40528207	1.40528207	1	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214233274	8	88153762	C	A	-	-	-	-	-	-	31	0	0	74	20	27.02702703	0	0	NA	0	0	NA	4.34E-29	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	1.926158821	0.963079411	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214233275	8	88173561	G	A	-	-	-	-	-	-	36	0	0	75	20	26.66666667	0	0	NA	0	0	NA	5.89E-29	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	1.900476704	0.950238352	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214233319	8	88582292	G	A	-	-	-	-	-	-	38	0	0	62	18	29.03225806	0	0	NA	0	0	NA	5.72E-27	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	2.069067379	1.03453369	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214233374	8	89275315	G	A	MMP16	CCDS6246.1	r.?	-	-	intronic	22	0	0	58	5	8.620689655	101	0	0	143	11	7.692307692	1.15E-05	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	0.614378245	1.056843746	0.581333094	0.00375	0.995	0.00125	2	1	2.30E-10	1	YES	1_1	somatic	custom.pulldown.HiSeq
1352322	PD9768b	1214233533	8	91178153	G	A	-	-	-	-	-	-	26	0	0	96	19	19.79166667	0	0	NA	0	0	NA	7.42E-25	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	1.410510054	1.410510054	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214233981	8	96259000	T	A	C8orf37	CCDS6268.1	r.1481a>u	c.?	p.?	3'UTR variant	31	0	0	90	40	44.44444444	0	0	NA	0	0	NA	4.26E-67	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	3.167461173	1.227064101	2.581333094	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214234188	8	98439133	G	A	-	-	-	-	-	-	23	0	0	97	13	13.40206186	0	0	NA	0	0	NA	3.85E-15	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	0.955136488	0.955136488	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214234679	8	103307925	G	A	UBR5	CCDS34933.1	r.3784c>u	c.3751C>T	p.R1251C	missense	26	0	0	93	16	17.20430108	186	0	0	209	32	15.31100478	4.04E-20	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	1.226114002	1.226114002	1	0	0.9975	0.0025	2	1	5.39E-37	1	YES	1_1	somatic	custom.pulldown.HiSeq
1352322	PD9768b	1214234726	8	103751964	C	A	-	-	-	-	-	-	18	0	0	80	14	17.5	0	0	NA	0	0	NA	6.76E-18	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	1.247187837	1.247187837	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214234857	8	104896478	C	A	RIMS2	ENST00000507740	r.?	-	-	intronic	40	0	0	80	20	25	0	0	NA	0	0	NA	2.53E-28	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	1.78169691	0.890848455	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214234963	8	106033580	G	A	-	-	-	-	-	-	28	0	0	66	15	22.72727273	0	0	NA	0	0	NA	6.45E-21	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	1.619724463	1.024277851	1.581333094	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214234967	8	106057218	G	A	-	-	-	-	-	-	39	0	0	89	20	22.47191011	0	0	NA	0	0	NA	2.72E-27	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	1.601525312	1.012769111	1.581333094	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214234980	8	106205800	C	A	-	-	-	-	-	-	31	0	0	110	36	32.72727273	0	0	NA	0	0	NA	1.31E-54	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	2.332403227	0.903565384	2.581333094	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214235024	8	106616341	G	A	ZFPM2	CCDS47908.1	r.?	-	-	intronic	46	0	0	69	6	8.695652174	0	0	NA	0	0	NA	1.43E-06	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	0.619720664	1.066033692	0.581333094	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214235036	8	106879962	G	A	-	-	-	-	-	-	41	0	0	75	22	29.33333333	0	0	NA	0	0	NA	9.55E-33	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	2.090524374	1.045262187	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214235094	8	107652038	C	A	OXR1	CCDS47909.1	r.?	-	-	intronic	38	0	0	91	15	16.48351648	0	0	NA	0	0	NA	1.17E-18	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	1.174745215	1.174745215	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214235417	8	111596516	C	A	-	-	-	-	-	-	33	0	0	84	20	23.80952381	0	0	NA	0	0	NA	7.54E-28	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	1.6968542	1.073052987	1.581333094	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214235448	8	112019720	T	A	-	-	-	-	-	-	22	0	0	65	12	18.46153846	0	0	NA	0	0	NA	7.70E-16	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	1.315714641	1.315714641	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214235624	8	114055343	T	A	CSMD3	CCDS6315.1	r.?	-	-	intronic	29	0	0	78	13	16.66666667	0	0	NA	0	0	NA	1.99E-16	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	1.18779794	1.18779794	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214235954	8	118132150	G	A	SLC30A8	CCDS6322.1	r.?	-	-	intronic	22	0	0	68	23	33.82352941	0	0	NA	0	0	NA	7.70E-36	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	2.410531113	0.933831871	2.581333094	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214236096	8	119790297	T	A	-	-	-	-	-	-	26	0	0	75	14	18.66666667	0	0	NA	0	0	NA	2.57E-18	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	1.330333693	1.330333693	1	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214236439	8	123371452	T	A	-	-	-	-	-	-	34	0	0	96	12	12.5	0	0	NA	0	0	NA	1.03E-13	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	0.890848455	0.890848455	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214236477	8	123826843	G	A	ZHX2	CCDS6336.1	r.?	-	-	intronic	32	0	0	74	8	10.81081081	0	0	NA	0	0	NA	4.39E-09	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	0.770463529	0.770463529	1	0.00375	0.995	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214236780	8	126806250	G	A	-	-	-	-	-	-	38	0	0	93	10	10.75268817	0	0	NA	0	0	NA	5.41E-11	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	0.766321252	0.766321252	1	0.00375	0.99625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214237294	8	132369489	G	A	-	-	-	-	-	-	29	0	0	92	15	16.30434783	0	0	NA	0	0	NA	1.39E-18	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	1.161976246	1.161976246	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214237378	8	133509438	T	A	-	-	-	-	-	-	39	0	0	87	20	22.98850575	0	0	NA	0	0	NA	1.65E-27	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	1.638341986	1.03605116	1.581333094	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214237692	8	137122640	C	A	-	-	-	-	-	-	13	0	0	63	14	22.22222222	0	0	NA	0	0	NA	1.81E-19	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	1.583730587	1.001516121	1.581333094	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214237711	8	137401678	G	A	-	-	-	-	-	-	28	0	0	88	29	32.95454545	0	0	NA	0	0	NA	2.12E-44	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	2.348600472	0.909840143	2.581333094	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214237941	8	139695050	C	A	COL22A1	CCDS6376.1	r.?	-	-	intronic	38	0	0	74	15	20.27027027	0	0	NA	0	0	NA	4.22E-20	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	1.444619116	1.444619116	1	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214237981	8	140006922	G	A	-	-	-	-	-	-	21	0	0	91	6	6.593406593	0	0	NA	0	0	NA	7.24E-06	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	0.469898086	0.808311261	0.581333094	0.00625	0.9925	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214238207	8	142177172	G	A	DENND3	CCDS34947.1	r.?	-	-	intronic	6	0	0	79	21	26.58227848	0	0	NA	0	0	NA	2.69E-30	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	1.894462537	0.947231269	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214238246	8	142527276	G	A	ENSG00000226490	ENST00000427937	r.?	-	-	intronic	21	0	0	78	22	28.20512821	0	0	NA	0	0	NA	2.58E-32	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	2.010119591	1.005059795	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214238257	8	142682937	G	A	-	-	-	-	-	-	37	0	0	101	19	18.81188119	0	0	NA	0	0	NA	2.10E-24	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	1.340682823	1.340682823	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214238446	8	144781049	G	A	ZNF707	CCDS47932.1	r.?	-	-	downstream	9	0	0	87	22	25.28735632	0	0	NA	0	0	NA	3.97E-31	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	1.802176185	0.901088092	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214238677	9	532058	G	A	KANK1	CCDS34976.1	r.?	-	-	intronic	30	0	0	66	24	36.36363636	0	0	NA	0	0	NA	3.04E-38	3	2	1	1	NA	NA	NA	unphased	2.016528926	1.008264463	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214239191	9	7322190	C	A	-	-	-	-	-	-	35	0	0	64	9	14.0625	0	0	NA	0	0	NA	4.20E-11	3	2	1	1	NA	NA	NA	unphased	0.779829545	0.779829545	1	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214239282	9	9123700	G	A	PTPRD	CCDS43786.1	r.?	-	-	intronic	31	0	0	49	8	16.32653061	0	0	NA	0	0	NA	1.47E-10	3	2	1	1	NA	NA	NA	unphased	0.905380334	0.905380334	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214239306	9	9696506	G	A	PTPRD	CCDS43786.1	r.?	-	-	intronic	34	0	0	62	8	12.90322581	0	0	NA	0	0	NA	1.04E-09	3	2	1	1	NA	NA	NA	unphased	0.715542522	0.715542522	1	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214239310	9	9830347	G	A	PTPRD	CCDS43786.1	r.?	-	-	intronic	29	0	0	47	14	29.78723404	0	0	NA	0	0	NA	1.79E-21	3	2	1	1	NA	NA	NA	unphased	1.651837524	0.825918762	2	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214239373	9	10695468	C	A	-	-	-	-	-	-	32	0	0	71	12	16.90140845	0	0	NA	0	0	NA	2.38E-15	3	2	1	1	NA	NA	NA	unphased	0.937259923	0.937259923	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214239399	9	11065292	C	A	-	-	-	-	-	-	24	0	0	63	23	36.50793651	0	0	NA	0	0	NA	9.25E-37	3	2	1	1	NA	NA	NA	unphased	2.024531025	1.012265512	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214239441	9	11778146	C	A	-	-	-	-	-	-	19	0	0	49	12	24.48979592	0	0	NA	0	0	NA	1.90E-17	3	2	1	1	NA	NA	NA	unphased	1.358070501	1.358070501	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214239518	9	12585830	G	A	-	-	-	-	-	-	40	0	0	71	27	38.02816901	0	0	NA	0	0	NA	1.77E-43	3	2	1	1	NA	NA	NA	unphased	2.108834827	1.054417414	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214239567	9	13416043	G	A	-	-	-	-	-	-	48	0	0	76	13	17.10526316	0	0	NA	0	0	NA	1.39E-16	3	2	1	1	NA	NA	NA	unphased	0.948564593	0.948564593	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214239643	9	14685156	C	A	ZDHHC21	CCDS6475.1	r.?	-	-	intronic	16	0	0	35	7	20	0	0	NA	0	0	NA	4.65E-10	3	2	1	1	NA	NA	NA	unphased	1.109090909	1.109090909	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214239749	9	16482271	T	A	BNC2	CCDS6482.2	r.?	-	-	intronic	31	0	0	54	22	40.74074074	0	0	NA	0	0	NA	1.60E-36	3	2	1	1	NA	NA	NA	unphased	2.259259259	1.12962963	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214240217	9	24972910	G	A	-	-	-	-	-	-	42	0	0	61	22	36.06557377	0	0	NA	0	0	NA	4.38E-35	3	2	1	1	NA	NA	NA	unphased	2	1	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214240468	9	29344057	C	A	-	-	-	-	-	-	31	0	0	66	21	31.81818182	0	0	NA	0	0	NA	3.42E-32	3	2	1	1	NA	NA	NA	unphased	1.76446281	0.882231405	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214240469	9	29344282	C	A	-	-	-	-	-	-	30	0	0	63	22	34.92063492	0	0	NA	0	0	NA	1.03E-34	3	2	1	1	NA	NA	NA	unphased	1.936507937	0.968253968	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214240502	9	29805934	G	A	-	-	-	-	-	-	39	0	0	51	7	13.7254902	0	0	NA	0	0	NA	7.46E-09	3	2	1	1	NA	NA	NA	unphased	0.76114082	0.76114082	1	0.005	0.995	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214240580	9	30904219	G	A	-	-	-	-	-	-	29	0	0	60	21	35	0	0	NA	0	0	NA	3.16E-33	3	2	1	1	NA	NA	NA	unphased	1.940909091	0.970454545	2	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214240636	9	31654692	C	A	-	-	-	-	-	-	39	1	2.564102564	65	23	35.38461538	0	0	NA	0	0	NA	2.21E-36	3	2	1	1	NA	NA	NA	unphased	1.962237762	0.981118881	2	0	1	0	2	0.177567718	1	1	NA	NA	NA	NA
1352322	PD9768b	1214241139	9	37887269	G	A	MCART1	CCDS6614.1	r.?	-	-	downstream	12	0	0	55	18	32.72727273	0	0	NA	0	0	NA	4.61E-28	3	2	1	1	NA	NA	NA	unphased	1.814876033	0.907438017	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214241225	9	39010368	T	A	-	-	-	-	-	-	17	0	0	51	7	13.7254902	0	0	NA	0	0	NA	7.46E-09	3	2	1	1	NA	NA	NA	unphased	0.76114082	0.76114082	1	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214241612	9	44088443	C	A	-	-	-	-	-	-	26	0	0	42	6	14.28571429	0	0	NA	0	0	NA	7.02E-08	2.697349171	1	1	0.302650829	2	1	0.697349171	unphased	0.748971959	1.074027174	0.697349171	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214243414	9	68151754	C	A	-	-	-	-	-	-	23	0	0	66	5	7.575757576	0	0	NA	0	0	NA	2.17E-05	2.697349171	1	1	0.302650829	2	1	0.697349171	unphased	0.3971821	0.569559865	0.697349171	0.01625	0.98375	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214245518	9	68992417	G	A	-	-	-	-	-	-	66	0	0	157	16	10.1910828	0	0	NA	0	0	NA	2.32E-16	2.697349171	1	1	0.302650829	2	1	0.697349171	unphased	0.534298468	0.766184991	0.697349171	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214246570	9	70681823	T	A	-	-	-	-	-	-	8	0	0	15	3	20	0	0	NA	0	0	NA	5.44E-05	2.697349171	1	1	0.302650829	2	1	0.697349171	unphased	1.048560743	1.048560743	1	0.00375	0.99625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214246858	9	73880448	C	A	TRPM3	ENST00000357533	r.?	-	-	intronic	40	0	0	48	16	33.33333333	0	0	NA	0	0	NA	2.96E-25	2.697349171	1	1	0.302650829	2	1	0.697349171	unphased	1.747601239	1.029606205	1.697349171	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214247052	9	76464322	G	A	-	-	-	-	-	-	37	0	0	76	26	34.21052632	0	0	NA	0	0	NA	1.80E-40	2.697349171	1	1	0.302650829	2	1	0.697349171	unphased	1.793590745	1.056701105	1.697349171	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214247123	9	77486659	C	A	TRPM6	CCDS6647.1	r.?	-	-	intronic	25	0	0	63	7	11.11111111	0	0	NA	0	0	NA	3.38E-08	2.697349171	1	1	0.302650829	2	1	0.697349171	unphased	0.582533746	0.835354469	0.697349171	0.005	0.995	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214247249	9	79195296	C	A	-	-	-	-	-	-	35	0	0	59	17	28.81355932	0	0	NA	0	0	NA	1.74E-25	2.697349171	1	1	0.302650829	2	1	0.697349171	unphased	1.510638359	0.889998584	1.697349171	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214247338	9	80889114	C	A	CEP78	ENST00000376598	r.?	-	-	downstream	40	0	0	60	10	16.66666667	0	0	NA	0	0	NA	5.86E-13	2.697349171	1	1	0.302650829	2	1	0.697349171	unphased	0.873800619	0.873800619	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214247472	9	83607810	G	A	-	-	-	-	-	-	43	0	0	71	16	22.53521127	0	0	NA	0	0	NA	3.77E-22	2.697349171	1	1	0.302650829	2	1	0.697349171	unphased	1.181476894	1.181476894	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214247549	9	85233609	C	A	-	-	-	-	-	-	34	0	0	66	10	15.15151515	0	0	NA	0	0	NA	1.60E-12	2.697349171	1	1	0.302650829	2	1	0.697349171	unphased	0.794364199	1.13911973	0.697349171	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214247691	9	87712975	G	A	-	-	-	-	-	-	42	0	0	57	10	17.54385965	0	0	NA	0	0	NA	3.40E-13	2.697349171	1	1	0.302650829	2	1	0.697349171	unphased	0.919790126	0.919790126	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214247731	9	88394884	G	A	-	-	-	-	-	-	31	0	0	52	9	17.30769231	0	0	NA	0	0	NA	5.92E-12	2.697349171	1	1	0.302650829	2	1	0.697349171	unphased	0.907408336	0.907408336	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214247823	9	89960044	T	A	-	-	-	-	-	-	32	0	0	54	9	16.66666667	0	0	NA	0	0	NA	8.48E-12	2.697349171	1	1	0.302650829	2	1	0.697349171	unphased	0.873800619	0.873800619	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214248029	9	92752910	G	A	-	-	-	-	-	-	40	0	0	83	14	16.86746988	0	0	NA	0	0	NA	1.17E-17	3.236559885	2	1	0.763440115	3	1	0.236559885	unphased	0.975279543	0.975279543	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214248083	9	93371303	C	A	DIRAS2	CCDS6687.1	r.?	-	-	downstream	28	0	0	55	10	18.18181818	0	0	NA	0	0	NA	2.33E-13	3.236559885	2	1	0.763440115	3	1	0.236559885	unphased	1.051275351	1.051275351	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214248153	9	94302302	G	A	-	-	-	-	-	-	32	0	0	61	7	11.47540984	0	0	NA	0	0	NA	2.69E-08	3.236559885	2	1	0.763440115	3	1	0.236559885	unphased	0.663509853	0.663509853	1	0.00625	0.99375	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214248531	9	99281746	G	A	CDC14C	CCDS6722.1	r.?	-	-	intronic	23	1	4.347826087	64	19	29.6875	0	0	NA	0	0	NA	1.34E-28	3.111719168	2	1	0.888280832	2	2	0.111719168	unphased	1.679473446	0.889419316	1.888280832	0	1	0	2	0.108890944	1	1	NA	NA	NA	NA
1352322	PD9768b	1214248551	9	99595386	T	A	ZNF782	ENST00000481138	r.?	-	-	intronic	32	0	0	66	8	12.12121212	0	0	NA	0	0	NA	1.73E-09	3.111719168	2	1	0.888280832	2	2	0.111719168	unphased	0.685718026	0.685718026	1	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214248718	9	103117531	G	A	TEX10	CCDS6748.1	r.?	-	-	upstream	30	0	0	41	7	17.07317073	0	0	NA	0	0	NA	1.51E-09	2.370148363	1	1	0.629851637	2	1	0.370148363	unphased	0.839249277	0.839249277	1	0.005	0.995	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214248770	9	104336393	G	A	GRIN3A	CCDS6758.1	r.?	-	-	intronic	34	0	0	54	8	14.81481481	0	0	NA	0	0	NA	3.31E-10	2.370148363	1	1	0.629851637	2	1	0.370148363	unphased	0.728237468	0.728237468	1	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214248771	9	104349538	G	A	GRIN3A	CCDS6758.1	r.?	-	-	intronic	15	0	0	47	14	29.78723404	0	0	NA	0	0	NA	1.79E-21	2.370148363	1	1	0.629851637	2	1	0.370148363	unphased	1.464222143	1.464222143	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214248786	9	104850097	T	A	-	-	-	-	-	-	31	0	0	51	10	19.60784314	1	0	0	0	0	NA	1.04E-13	2.370148363	1	1	0.629851637	2	1	0.370148363	unphased	0.963843708	0.963843708	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214248850	9	106018928	G	A	-	-	-	-	-	-	28	0	0	61	12	19.67213115	0	0	NA	0	0	NA	3.39E-16	2.370148363	1	1	0.629851637	2	1	0.370148363	unphased	0.967003851	0.967003851	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214249030	9	109896619	G	A	-	-	-	-	-	-	7	0	0	62	8	12.90322581	0	0	NA	0	0	NA	1.04E-09	2.370148363	1	1	0.629851637	2	1	0.370148363	unphased	0.634271343	0.634271343	1	0.01125	0.98875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214249107	9	111517285	G	A	-	-	-	-	-	-	29	0	0	56	7	12.5	0	0	NA	0	0	NA	1.46E-08	2.370148363	1	1	0.629851637	2	1	0.370148363	unphased	0.614450364	0.614450364	1	0.015	0.985	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214249128	9	111976247	C	A	EPB41L4B	CCDS43859.1	r.?	-	-	intronic	34	0	0	44	16	36.36363636	0	0	NA	0	0	NA	5.57E-26	2.370148363	1	1	0.629851637	2	1	0.370148363	unphased	1.787491967	1.304597381	1.370148363	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214249475	9	117621783	C	A	-	-	-	-	-	-	30	0	0	62	10	16.12903226	0	0	NA	0	0	NA	8.29E-13	2.370148363	1	1	0.629851637	2	1	0.370148363	unphased	0.792839179	0.792839179	1	0.005	0.995	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214249571	9	119116725	G	A	PAPPAS	CCDS6813.1	r.?	-	-	intronic	32	0	0	65	10	15.38461538	0	0	NA	0	0	NA	1.36E-12	2.370148363	1	1	0.629851637	2	1	0.370148363	unphased	0.756246601	0.756246601	1	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214249940	9	124687964	T	A	TTLL11	CCDS48012.1	r.?	-	-	intronic	7	0	0	58	30	51.72413793	0	0	NA	0	0	NA	2.36E-53	2.370148363	1	1	0.629851637	2	1	0.370148363	unphased	2.542553229	1.85567731	1.370148363	0	0.7925	0.2075	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214250849	9	135968632	G	A	RALGDS	CCDS43897.1	r.?	-	-	downstream	24	0	0	48	6	12.5	0	0	NA	0	0	NA	1.60E-07	2.687706236	2	0	0.312293764	2	1	0.687706236	unphased	0.654145098	0.951198438	0.687706236	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214251033	9	140986428	C	A	CACNA1B	ENST00000371372	r.?	-	-	intronic	35	0	0	46	16	34.7826087	0	0	NA	0	0	NA	1.31E-25	2.687706236	2	0	0.312293764	2	1	0.687706236	unphased	1.820229837	0.910114919	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214251301	X	5775597	G	A	-	-	-	-	-	-	37	0	0	87	7	8.045977011	0	0	NA	0	0	NA	3.22E-07	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	0.387631463	1.42380296	0.272250778	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214251640	X	11578003	G	A	ARHGAP6	CCDS14140.1	r.?	-	-	intronic	6	0	0	50	11	22	0	0	NA	0	0	NA	1.52E-15	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	1.059895171	1.059895171	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214251729	X	13468857	T	A	-	-	-	-	-	-	29	0	0	70	20	28.57142857	0	0	NA	0	0	NA	1.22E-29	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	1.376487235	1.376487235	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214251803	X	15151075	C	A	-	-	-	-	-	-	26	0	0	51	5	9.803921569	0	0	NA	0	0	NA	6.06E-06	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	0.472324051	0.472324051	1	0.05875	0.94125	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214251934	X	17959127	T	A	-	-	-	-	-	-	36	0	0	58	9	15.51724138	0	0	NA	0	0	NA	1.67E-11	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	0.747574964	0.747574964	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214251990	X	18811562	T	A	PPEF1	CCDS14188.1	r.?	-	-	intronic	27	0	0	34	11	32.35294118	0	0	NA	0	0	NA	1.26E-17	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	1.558669369	1.558669369	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214252009	X	19203294	C	A	-	-	-	-	-	-	30	0	0	59	16	27.11864407	0	0	NA	0	0	NA	1.37E-23	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	1.306496359	1.306496359	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214252132	X	22618185	G	A	-	-	-	-	-	-	42	0	0	45	10	22.22222222	0	0	NA	0	0	NA	2.66E-14	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	1.070601183	1.070601183	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214252158	X	23273048	G	A	-	-	-	-	-	-	37	0	0	63	14	22.22222222	0	0	NA	0	0	NA	1.81E-19	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	1.070601183	1.070601183	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214252280	X	26088592	C	A	-	-	-	-	-	-	23	0	0	48	9	18.75	0	0	NA	0	0	NA	2.75E-12	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	0.903319748	0.903319748	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214252332	X	27725229	G	A	-	-	-	-	-	-	29	0	0	65	13	20	0	0	NA	0	0	NA	1.57E-17	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	0.963541065	0.963541065	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214252336	X	27899197	G	A	-	-	-	-	-	-	32	0	0	48	12	25	0	0	NA	0	0	NA	1.44E-17	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	1.204426331	1.204426331	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214252349	X	28274697	G	A	-	-	-	-	-	-	37	0	0	65	12	18.46153846	0	0	NA	0	0	NA	7.70E-16	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	0.889422521	0.889422521	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214252365	X	28839946	C	A	IL1RAPL1	CCDS14218.1	r.?	-	-	intronic	27	0	0	75	17	22.66666667	0	0	NA	0	0	NA	1.72E-23	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	1.092013207	1.092013207	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214252566	X	33430105	G	A	-	-	-	-	-	-	35	0	0	68	13	19.11764706	0	0	NA	0	0	NA	2.96E-17	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	0.9210319	0.9210319	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214252570	X	33537177	G	A	-	-	-	-	-	-	24	0	0	46	14	30.43478261	0	0	NA	0	0	NA	1.26E-21	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	1.466258142	1.466258142	1	0	0.99625	0.00375	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214252589	X	34112900	G	A	-	-	-	-	-	-	27	0	0	65	16	24.61538462	0	0	NA	0	0	NA	7.85E-23	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	1.185896695	1.185896695	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214252612	X	34879501	G	A	-	-	-	-	-	-	33	0	0	53	13	24.52830189	0	0	NA	0	0	NA	8.53E-19	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	1.181701306	1.181701306	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214252676	X	36718967	C	A	-	-	-	-	-	-	39	0	0	45	8	17.77777778	0	0	NA	0	0	NA	7.14E-11	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	0.856480946	0.856480946	1	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214252895	X	41864282	G	A	-	-	-	-	-	-	21	0	0	58	9	15.51724138	0	0	NA	0	0	NA	1.67E-11	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	0.747574964	0.747574964	1	0.005	0.995	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214252987	X	44126035	C	A	EFHC2	ENST00000415199	r.?	-	-	intronic	29	0	0	59	13	22.03389831	0	0	NA	0	0	NA	3.99E-18	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	1.061528292	1.061528292	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214253074	X	45932604	C	A	-	-	-	-	-	-	38	0	0	73	14	19.17808219	0	0	NA	0	0	NA	1.71E-18	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	0.923943487	0.923943487	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214253084	X	46048143	G	A	-	-	-	-	-	-	37	0	0	48	10	20.83333333	0	0	NA	0	0	NA	5.37E-14	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	1.003688609	1.003688609	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214253093	X	46215165	G	A	-	-	-	-	-	-	29	0	0	44	16	36.36363636	0	0	NA	0	0	NA	5.57E-26	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	1.751892845	1.37700277	1.272250778	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214253177	X	47619907	C	A	-	-	-	-	-	-	25	0	0	49	13	26.53061224	0	0	NA	0	0	NA	2.71E-19	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	1.278166718	1.278166718	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214253200	X	48088977	T	A	-	-	-	-	-	-	26	0	0	68	13	19.11764706	0	0	NA	0	0	NA	2.96E-17	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	0.9210319	0.9210319	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214253238	X	48697410	G	A	PCSK1N	CCDS14307.1	r.?	-	-	upstream	21	0	0	59	14	23.72881356	0	0	NA	0	0	NA	6.58E-20	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	1.143184314	1.143184314	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214253296	X	49964264	C	A	AKAP4	CCDS14330.1	r.?	-	-	intronic	24	0	0	44	6	13.63636364	1	0	0	0	0	NA	9.37E-08	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	0.656959817	0.656959817	1	0.00625	0.99375	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214253372	X	51912627	G	A	-	-	-	-	-	-	25	0	0	60	15	25	0	0	NA	0	0	NA	1.31E-21	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	1.204426331	1.204426331	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214253373	X	51914887	T	A	-	-	-	-	-	-	25	0	0	49	14	28.57142857	0	0	NA	0	0	NA	3.50E-21	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	1.376487235	1.376487235	1	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214254266	X	62741946	C	A	-	-	-	-	-	-	33	0	0	60	8	13.33333333	0	0	NA	0	0	NA	7.93E-10	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	0.64236071	0.64236071	1	0.015	0.985	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214254375	X	66105245	T	A	-	-	-	-	-	-	36	0	0	72	5	6.944444444	0	0	NA	0	0	NA	3.31E-05	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	0.33456287	1.228877554	0.272250778	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214254501	X	69502373	T	A	RAB41	CCDS35322.1	r.171-10u>a	c.125-10T>A	p.?	splice region	16	0	0	42	8	19.04761905	0	0	NA	0	0	NA	3.96E-11	2	1	1	1	NA	NA	NA	unphased	0.865800866	0.865800866	1	0.00375	0.99625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214254826	X	76611210	C	A	-	-	-	-	-	-	21	0	0	60	12	20	0	0	NA	0	0	NA	2.74E-16	2	1	1	1	NA	NA	NA	unphased	0.909090909	0.909090909	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214254885	X	78102562	G	A	-	-	-	-	-	-	32	0	0	42	5	11.9047619	0	0	NA	0	0	NA	2.28E-06	2	1	1	1	NA	NA	NA	unphased	0.541125541	0.541125541	1	0.0275	0.9725	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214254932	X	79573654	T	A	-	-	-	-	-	-	34	0	0	41	5	12.19512195	0	0	NA	0	0	NA	2.02E-06	2	1	1	1	NA	NA	NA	unphased	0.554323725	0.554323725	1	0.01	0.99	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214254940	X	79883106	G	A	-	-	-	-	-	-	41	0	0	45	10	22.22222222	0	0	NA	0	0	NA	2.66E-14	2	1	1	1	NA	NA	NA	unphased	1.01010101	1.01010101	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214254946	X	80068807	G	A	BRWD3	CCDS14447.1	r.?	-	-	upstream	21	0	0	50	9	18	0	0	NA	0	0	NA	4.07E-12	2	1	1	1	NA	NA	NA	unphased	0.818181818	0.818181818	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214255081	X	84369606	C	A	-	-	-	-	-	-	35	0	0	48	7	14.58333333	0	0	NA	0	0	NA	4.81E-09	2	1	1	1	NA	NA	NA	unphased	0.662878788	0.662878788	1	0.01125	0.98875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214255119	X	85368401	C	A	-	-	-	-	-	-	27	0	0	46	11	23.91304348	0	0	NA	0	0	NA	5.55E-16	2	1	1	1	NA	NA	NA	unphased	1.086956522	1.086956522	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214255128	X	85508692	T	A	DACH2	CCDS48140.1	r.?	-	-	intronic	42	0	0	45	7	15.55555556	0	0	NA	0	0	NA	3.00E-09	2	1	1	1	NA	NA	NA	unphased	0.707070707	0.707070707	1	0.00375	0.99625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214255293	X	88533924	G	A	-	-	-	-	-	-	24	0	0	34	5	14.70588235	0	0	NA	0	0	NA	7.71E-07	2	1	1	1	NA	NA	NA	unphased	0.668449198	0.668449198	1	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214255377	X	90854656	G	A	-	-	-	-	-	-	41	0	0	54	8	14.81481481	0	0	NA	0	0	NA	3.31E-10	1.633981384	1	0	0.366018616	1	1	0.633981384	unphased	0.619175693	0.97664649	0.633981384	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214255379	X	90873659	C	A	-	-	-	-	-	-	34	0	0	50	8	16	0	0	NA	0	0	NA	1.74E-10	1.633981384	1	0	0.366018616	1	1	0.633981384	unphased	0.668709749	1.054778209	0.633981384	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214255501	X	93891580	C	A	-	-	-	-	-	-	58	0	0	43	5	11.62790698	0	0	NA	0	0	NA	2.57E-06	2	1	1	1	NA	NA	NA	unphased	0.528541226	0.528541226	1	0.0275	0.9725	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214255558	X	95353057	G	A	-	-	-	-	-	-	33	0	0	38	17	44.73684211	0	0	NA	0	0	NA	1.99E-29	2	1	1	1	NA	NA	NA	unphased	2.033492823	2.033492823	1	0	0.95625	0.04375	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214255817	X	101908052	G	A	GPRASP1	CCDS35352.1	r.?	-	-	intronic	37	0	0	64	11	17.1875	0	0	NA	0	0	NA	2.85E-14	2	1	1	1	NA	NA	NA	unphased	0.78125	0.78125	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214255891	X	103816279	T	A	IL1RAPL2	CCDS14517.1	r.?	-	-	intronic	32	0	0	52	8	15.38461538	0	0	NA	0	0	NA	2.42E-10	2	1	1	1	NA	NA	NA	unphased	0.699300699	0.699300699	1	0.00625	0.99375	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214255903	X	104085024	G	A	IL1RAPL2	CCDS14517.1	r.?	-	-	intronic	36	0	0	45	13	28.88888889	0	0	NA	0	0	NA	7.68E-20	2	1	1	1	NA	NA	NA	unphased	1.313131313	1.313131313	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214256055	X	108870916	C	A	KCNE1L	CCDS14547.1	r.?	-	-	upstream	28	0	0	54	8	14.81481481	0	0	NA	0	0	NA	3.31E-10	2	1	1	1	NA	NA	NA	unphased	0.673400673	0.673400673	1	0.01625	0.98375	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214256243	X	113881932	T	A	HTR2C	CCDS14564.1	r.?	-	-	intronic	39	0	0	43	8	18.60465116	0	0	NA	0	0	NA	4.85E-11	2	1	1	1	NA	NA	NA	unphased	0.845665962	0.845665962	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214256339	X	116269221	G	A	-	-	-	-	-	-	26	0	0	52	11	21.15384615	0	0	NA	0	0	NA	2.44E-15	2	1	1	1	NA	NA	NA	unphased	0.961538462	0.961538462	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214256400	X	117651945	G	A	DOCK11	CCDS35373.1	r.?	-	-	intronic	31	0	0	60	17	28.33333333	0	0	NA	0	0	NA	2.41E-25	2	1	1	1	NA	NA	NA	unphased	1.287878788	1.287878788	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214256582	X	121616606	G	A	-	-	-	-	-	-	23	0	0	52	11	21.15384615	0	0	NA	0	0	NA	2.44E-15	2	1	1	1	NA	NA	NA	unphased	0.961538462	0.961538462	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214256620	X	122324530	G	A	GRIA3	ENST00000264357	r.?	-	-	intronic	27	0	0	61	9	14.75409836	0	0	NA	0	0	NA	2.68E-11	2	1	1	1	NA	NA	NA	unphased	0.670640835	0.670640835	1	0.005	0.995	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214256633	X	122916904	G	A	-	-	-	-	-	-	22	0	0	45	9	20	0	0	NA	0	0	NA	1.47E-12	2	1	1	1	NA	NA	NA	unphased	0.909090909	0.909090909	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214256655	X	123260458	C	A	-	-	-	-	-	-	29	0	0	53	12	22.64150943	0	0	NA	0	0	NA	5.39E-17	2	1	1	1	NA	NA	NA	unphased	1.02915952	1.02915952	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214256761	X	125713740	G	A	-	-	-	-	-	-	13	0	0	43	9	20.93023256	2	0	0	0	0	NA	9.45E-13	2	1	1	1	NA	NA	NA	unphased	0.951374207	0.951374207	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214256827	X	127762442	G	A	-	-	-	-	-	-	30	0	0	54	9	16.66666667	0	0	NA	0	0	NA	8.48E-12	2	1	1	1	NA	NA	NA	unphased	0.757575758	0.757575758	1	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214256901	X	129137644	G	A	BCORL1	CCDS14616.1	r.?	-	-	intronic	29	0	0	53	10	18.86792453	0	0	NA	0	0	NA	1.57E-13	2	1	1	1	NA	NA	NA	unphased	0.857632933	0.857632933	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214256947	X	130278902	C	A	-	-	-	-	-	-	30	0	0	46	9	19.56521739	0	0	NA	0	0	NA	1.82E-12	2	1	1	1	NA	NA	NA	unphased	0.889328063	0.889328063	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214257104	X	134732079	T	A	-	-	-	-	-	-	35	0	0	69	9	13.04347826	0	0	NA	0	0	NA	8.45E-11	2	1	1	1	NA	NA	NA	unphased	0.592885375	0.592885375	1	0.02375	0.97625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214257307	X	139966093	G	A	-	-	-	-	-	-	35	0	0	59	14	23.72881356	0	0	NA	0	0	NA	6.58E-20	2	1	1	1	NA	NA	NA	unphased	1.078582435	1.078582435	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214257447	X	143371340	T	A	-	-	-	-	-	-	22	0	0	55	7	12.72727273	0	0	NA	0	0	NA	1.28E-08	2	1	1	1	NA	NA	NA	unphased	0.578512397	0.578512397	1	0.02125	0.97875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214257521	X	145104027	G	A	-	-	-	-	-	-	29	0	0	57	16	28.07017544	0	0	NA	0	0	NA	7.28E-24	2	1	1	1	NA	NA	NA	unphased	1.275917065	1.275917065	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214257531	X	145274797	T	A	-	-	-	-	-	-	32	0	0	34	11	32.35294118	0	0	NA	0	0	NA	1.26E-17	2	1	1	1	NA	NA	NA	unphased	1.470588235	1.470588235	1	0	0.99625	0.00375	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214257556	X	145846426	G	A	-	-	-	-	-	-	31	0	0	59	17	28.81355932	0	0	NA	0	0	NA	1.74E-25	2	1	1	1	NA	NA	NA	unphased	1.309707242	1.309707242	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214257567	X	146052130	C	A	-	-	-	-	-	-	17	0	0	31	4	12.90322581	0	0	NA	0	0	NA	1.77E-05	2	1	1	1	NA	NA	NA	unphased	0.586510264	0.586510264	1	0.01125	0.98875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214257595	X	146832716	G	A	-	-	-	-	-	-	25	0	0	54	15	27.77777778	0	0	NA	0	0	NA	2.20E-22	2	1	1	1	NA	NA	NA	unphased	1.262626263	1.262626263	1	0	0.99625	0.00375	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214257636	X	147942171	G	A	AFF2	CCDS14684.1	r.?	-	-	intronic	37	0	0	50	12	24	0	0	NA	0	0	NA	2.49E-17	2	1	1	1	NA	NA	NA	unphased	1.090909091	1.090909091	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214257742	X	150931820	C	A	-	-	-	-	-	-	16	0	0	40	5	12.5	0	0	NA	0	0	NA	1.78E-06	2	1	1	1	NA	NA	NA	unphased	0.568181818	0.568181818	1	0.01125	0.98875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214257751	X	151099960	C	A	-	-	-	-	-	-	35	0	0	48	6	12.5	0	0	NA	0	0	NA	1.60E-07	2	1	1	1	NA	NA	NA	unphased	0.568181818	0.568181818	1	0.0225	0.9775	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214257779	X	151843144	C	A	-	-	-	-	-	-	36	0	0	43	13	30.23255814	0	0	NA	0	0	NA	3.88E-20	2	1	1	1	NA	NA	NA	unphased	1.374207188	1.374207188	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1213998927	1	4431013	A	C	-	-	-	-	-	-	21	0	0	43	18	41.86046512	0	0	NA	0	0	NA	2.06E-30	2.087633076	2	0	0.912366924	2	1	0.087633076	unphased	1.939432028	1.014152673	1.912366924	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1213999147	1	7932051	T	C	-	-	-	-	-	-	11	0	0	50	9	18	0	0	NA	0	0	NA	4.07E-12	2.087633076	2	0	0.912366924	2	1	0.087633076	unphased	0.833955772	0.833955772	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1213999625	1	15331050	G	C	ENSG00000189337	CCDS152.2	r.?	-	-	intronic	26	0	0	49	17	34.69387755	0	0	NA	0	0	NA	4.26E-27	2.087633076	2	0	0.912366924	2	1	0.087633076	unphased	1.607397746	0.840527896	1.912366924	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214000456	1	20464347	G	C	PLA2G2F	CCDS204.2	r.?	-	-	upstream	22	0	0	44	7	15.90909091	0	0	NA	0	0	NA	2.55E-09	2.076176848	2	0	0.923823152	2	1	0.076176848	unphased	0.73525954	0.73525954	1	0.00375	0.99625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214001502	1	36825633	A	C	STK40	CCDS407.1	r.?	-	-	intronic	36	0	0	82	36	43.90243902	0	0	NA	0	0	NA	2.70E-60	3.641171102	2	1	0.358828898	2	2	0.641171102	unphased	2.716079553	1.358039776	2	0	0.99375	0.00625	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214002087	1	43301335	T	C	ERMAP	CCDS475.1	r.?	-	-	intronic	37	0	0	69	20	28.98550725	0	0	NA	0	0	NA	8.73E-30	3.641171102	2	1	0.358828898	2	2	0.641171102	unphased	1.793224825	0.896612413	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214002187	1	44850822	T	C	-	-	-	-	-	-	37	0	0	55	13	23.63636364	0	0	NA	0	0	NA	1.46E-18	3.641171102	2	1	0.358828898	2	2	0.641171102	unphased	1.462293335	1.462293335	1	0	0.995	0.005	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214002197	1	44955227	T	C	RNF220	CCDS510.1	r.?	-	-	intronic	40	0	0	66	19	28.78787879	0	0	NA	0	0	NA	2.64E-28	3.641171102	2	1	0.358828898	2	2	0.641171102	unphased	1.780998293	0.890499146	2	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214003055	1	56333129	A	C	-	-	-	-	-	-	24	0	0	64	21	32.8125	0	0	NA	0	0	NA	1.60E-32	3.641171102	2	1	0.358828898	2	2	0.641171102	unphased	2.029986541	1.01499327	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214003283	1	60164971	G	C	FGGY	CCDS44155.1	r.?	-	-	intronic	40	0	0	76	25	32.89473684	0	0	NA	0	0	NA	1.83E-38	3.641171102	2	1	0.358828898	2	2	0.641171102	unphased	2.035074226	1.017537113	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214003666	1	64628851	G	C	ROR1	CCDS626.1	r.?	-	-	intronic	20	0	0	80	26	32.5	0	0	NA	0	0	NA	8.83E-40	3.641171102	2	1	0.358828898	2	2	0.641171102	unphased	2.010653336	1.005326668	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214003800	1	66597611	G	C	PDE4B	CCDS632.1	r.?	-	-	intronic	26	0	0	75	23	30.66666667	0	0	NA	0	0	NA	1.10E-34	3.641171102	2	1	0.358828898	2	2	0.641171102	unphased	1.897231865	0.948615933	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214003993	1	69601273	T	C	-	-	-	-	-	-	29	0	0	76	20	26.31578947	0	0	NA	0	0	NA	7.96E-29	3.641171102	2	1	0.358828898	2	2	0.641171102	unphased	1.628059381	0.814029691	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214004209	1	72620248	T	C	NEGR1	CCDS661.1	r.?	-	-	intronic	37	0	0	67	15	22.3880597	0	0	NA	0	0	NA	8.27E-21	3.641171102	2	1	0.358828898	2	2	0.641171102	unphased	1.385065444	1.385065444	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214004428	1	75527948	T	C	-	-	-	-	-	-	34	0	0	79	16	20.25316456	0	0	NA	0	0	NA	2.45E-21	3.641171102	2	1	0.358828898	2	2	0.641171102	unphased	1.252987473	1.252987473	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214004525	1	76837262	G	C	ST6GALNAC3	CCDS672.1	r.?	-	-	intronic	33	0	0	75	14	18.66666667	0	0	NA	0	0	NA	2.57E-18	3.641171102	2	1	0.358828898	2	2	0.641171102	unphased	1.154836788	1.154836788	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214004556	1	77405222	G	C	ST6GALNAC5	CCDS673.1	r.?	-	-	intronic	36	0	0	79	25	31.64556962	0	0	NA	0	0	NA	5.74E-38	3.641171102	2	1	0.358828898	2	2	0.641171102	unphased	1.957792927	0.978896463	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214004790	1	80458310	G	C	-	-	-	-	-	-	42	0	0	74	27	36.48648649	0	0	NA	0	0	NA	6.97E-43	3.641171102	2	1	0.358828898	2	2	0.641171102	unphased	2.257282331	1.128641165	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214004873	1	81222183	A	C	-	-	-	-	-	-	30	0	0	62	15	24.19354839	0	0	NA	0	0	NA	2.28E-21	3.641171102	2	1	0.358828898	2	2	0.641171102	unphased	1.49676427	1.49676427	1	0	0.995	0.005	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214005311	1	85986227	T	C	-	-	-	-	-	-	65	0	0	145	25	17.24137931	0	0	NA	0	0	NA	1.30E-30	3.641171102	2	1	0.358828898	2	2	0.641171102	unphased	1.066659594	1.066659594	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214005398	1	87255597	T	C	ENSG00000183291	ENST00000499679	r.?	-	-	intronic	29	0	0	68	29	42.64705882	0	0	NA	0	0	NA	2.12E-48	3.641171102	2	1	0.358828898	2	2	0.641171102	unphased	2.638413879	1.31920694	2	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214006158	1	97549487	A	C	DPYD	CCDS30777.1	r.?	-	-	intronic	29	0	0	77	10	12.98701299	0	0	NA	0	0	NA	7.90E-12	3.641171102	2	1	0.358828898	2	2	0.641171102	unphased	0.803457876	0.803457876	1	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214006495	1	102366525	A	C	OLFM3	CCDS30781.1	r.?	-	-	intronic	30	0	0	76	10	13.15789474	0	0	NA	0	0	NA	6.90E-12	3.641171102	2	1	0.358828898	2	2	0.641171102	unphased	0.814029691	0.814029691	1	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214006510	1	102683916	T	C	-	-	-	-	-	-	34	0	0	81	20	24.69135802	0	0	NA	0	0	NA	3.35E-28	3.641171102	2	1	0.358828898	2	2	0.641171102	unphased	1.527561888	1.124175304	1.358828898	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214007002	1	109839250	G	C	MYBPHL	CCDS30793.1	r.?	-	-	intronic	14	0	0	62	7	11.29032258	0	0	NA	0	0	NA	3.02E-08	3.641171102	2	1	0.358828898	2	2	0.641171102	unphased	0.698489993	1.089397183	0.641171102	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214007713	1	118203304	G	C	-	-	-	-	-	-	36	0	0	74	24	32.43243243	0	0	NA	0	0	NA	8.21E-37	3.641171102	2	1	0.358828898	2	2	0.641171102	unphased	2.006473183	1.003236592	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214014635	1	154868591	T	C	-	-	-	-	-	-	15	0	0	69	11	15.94202899	0	0	NA	0	0	NA	6.82E-14	4	3	1	1	NA	NA	NA	unphased	1.043478261	1.043478261	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214014850	1	156853042	G	C	NTRK1	CCDS30891.1	r.?	-	-	downstream	18	0	0	66	10	15.15151515	0	0	NA	0	0	NA	1.60E-12	4	3	1	1	NA	NA	NA	unphased	0.991735537	0.991735537	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214015060	1	159514800	G	C	-	-	-	-	-	-	32	0	0	79	11	13.92405063	0	0	NA	0	0	NA	3.23E-13	4	3	1	1	NA	NA	NA	unphased	0.911392405	0.911392405	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214015075	1	159714610	G	C	-	-	-	-	-	-	26	0	0	65	9	13.84615385	0	0	NA	0	0	NA	4.85E-11	4	3	1	1	NA	NA	NA	unphased	0.906293706	0.906293706	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214015401	1	162692402	T	C	DDR2	CCDS1241.1	r.?	-	-	intronic	42	0	0	87	20	22.98850575	0	0	NA	0	0	NA	1.65E-27	4	3	1	1	NA	NA	NA	unphased	1.504702194	0.752351097	2	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214015462	1	163399136	A	C	-	-	-	-	-	-	41	0	0	66	10	15.15151515	0	0	NA	0	0	NA	1.60E-12	4	3	1	1	NA	NA	NA	unphased	0.991735537	0.991735537	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214015510	1	164003046	T	C	-	-	-	-	-	-	36	0	0	78	36	46.15384615	0	0	NA	0	0	NA	2.57E-61	4	3	1	1	NA	NA	NA	unphased	3.020979021	1.006993007	3	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214015995	1	169257213	T	C	NME7	CCDS1277.1	r.?	-	-	intronic	35	0	0	68	11	16.17647059	0	0	NA	0	0	NA	5.76E-14	4	3	1	1	NA	NA	NA	unphased	1.058823529	1.058823529	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214016124	1	170762550	A	C	-	-	-	-	-	-	45	0	0	68	6	8.823529412	0	0	NA	0	0	NA	1.31E-06	4	3	1	1	NA	NA	NA	unphased	0.577540107	0.577540107	1	0.01625	0.98375	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214016560	1	176339488	T	C	-	-	-	-	-	-	31	0	0	62	12	19.35483871	0	0	NA	0	0	NA	4.19E-16	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	1.169423445	1.169423445	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214016597	1	177071475	T	C	ASTN1	CCDS1319.1	r.?	-	-	intronic	35	0	0	95	10	10.52631579	0	0	NA	0	0	NA	6.70E-11	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	0.636002225	1.280799474	0.496566588	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214016674	1	178379433	G	C	RASAL2	CCDS1322.1	r.?	-	-	intronic	25	0	0	47	7	14.89361702	0	0	NA	0	0	NA	4.12E-09	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	0.899875488	0.899875488	1	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214017128	1	183307648	G	C	NMNAT2	CCDS1353.1	r.?	-	-	intronic	30	0	0	69	14	20.28985507	0	0	NA	0	0	NA	7.30E-19	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	1.225917331	1.225917331	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214017649	1	189785911	T	C	-	-	-	-	-	-	22	0	0	83	13	15.6626506	0	0	NA	0	0	NA	4.66E-16	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	0.946340659	0.946340659	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214017774	1	191372939	G	C	-	-	-	-	-	-	40	0	0	72	5	6.944444444	0	0	NA	0	0	NA	3.31E-05	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	0.419584801	0.844971876	0.496566588	0.0025	0.99625	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214017959	1	194112092	T	C	-	-	-	-	-	-	26	0	0	67	23	34.32835821	0	0	NA	0	0	NA	5.12E-36	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	2.074126658	1.037063329	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214018067	1	195781377	T	C	-	-	-	-	-	-	38	0	0	70	14	20	0	0	NA	0	0	NA	9.08E-19	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	1.208404227	1.208404227	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214018387	1	199578198	T	C	-	-	-	-	-	-	39	0	0	77	8	10.38961039	0	0	NA	0	0	NA	6.05E-09	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	0.627742455	1.264165715	0.496566588	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214018428	1	200018606	G	C	NR5A2	CCDS1401.1	r.?	-	-	intronic	36	0	0	74	33	44.59459459	0	0	NA	0	0	NA	1.09E-55	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	2.69441483	1.079248133	2.496566588	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214018607	1	201732336	G	C	NAV1	CCDS1414.1	r.?	-	-	intronic	40	0	0	91	44	48.35164835	0	0	NA	0	0	NA	8.88E-76	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	2.921416812	1.1701738	2.496566588	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214018767	1	203372579	T	C	-	-	-	-	-	-	24	0	0	94	19	20.21276596	0	0	NA	0	0	NA	4.81E-25	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	1.221259591	1.221259591	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214019208	1	208693940	G	C	-	-	-	-	-	-	37	0	0	60	10	16.66666667	0	0	NA	0	0	NA	5.86E-13	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	1.007003522	1.007003522	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214019291	1	209856961	G	C	HSD11B1	CCDS1489.1	r.?	-	-	upstream	42	0	0	82	9	10.97560976	0	0	NA	0	0	NA	4.12E-10	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	0.663148661	1.335467745	0.496566588	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214019561	1	212453070	G	C	-	-	-	-	-	-	24	0	0	79	7	8.860759494	0	0	NA	0	0	NA	1.65E-07	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	0.535368961	1.07814133	0.496566588	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214020537	1	224150766	A	C	-	-	-	-	-	-	11	0	0	37	6	16.21621622	0	0	NA	0	0	NA	3.18E-08	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	0.979787211	0.979787211	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214021394	1	233280816	T	C	PCNXL2	CCDS44335.1	r.?	-	-	intronic	7	0	0	59	9	15.25423729	0	0	NA	0	0	NA	1.96E-11	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	0.921664241	0.921664241	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214021996	1	238798579	T	C	-	-	-	-	-	-	32	0	0	59	24	40.6779661	0	0	NA	0	0	NA	1.09E-39	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	2.457771308	0.984460547	2.496566588	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214022217	1	241274186	T	C	RGS7	CCDS31071.1	r.?	-	-	intronic	24	0	0	64	13	20.3125	0	0	NA	0	0	NA	1.26E-17	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	1.227285543	1.227285543	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214022906	1	248130199	G	C	OR2L13	CCDS1637.1	r.?	-	-	intronic	27	0	0	78	12	15.38461538	0	0	NA	0	0	NA	7.82E-15	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	0.929541713	0.929541713	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214022914	1	248260521	A	C	OR2L13	CCDS1637.1	r.?	-	-	intronic	40	0	0	84	15	17.85714286	0	0	NA	0	0	NA	3.27E-19	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	1.078932345	1.078932345	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214022931	1	248571041	T	C	OR2T1	CCDS31115.1	r.?	-	-	downstream	34	0	0	60	9	15	0	0	NA	2	0	0	2.29E-11	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	0.90630317	0.90630317	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214022961	1	248621759	T	C	OR2T2	CCDS31116.1	r.?	-	-	downstream	55	0	0	106	7	6.603773585	0	0	NA	0	0	NA	1.24E-06	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	0.399001396	0.803520425	0.496566588	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214022992	1	248796230	T	C	-	-	-	-	-	-	8	0	0	23	6	26.08695652	0	0	NA	0	0	NA	1.47E-09	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	1.576179426	1.576179426	1	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214023566	10	1209495	G	C	-	-	-	-	-	-	10	0	0	204	11	5.392156863	0	0	NA	0	0	NA	9.78E-09	17.72953575	16	1	0.270464248	16	2	0.729535752	unphased	1.093259281	1.093259281	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214024008	10	1998936	G	C	-	-	-	-	-	-	44	0	0	271	21	7.749077491	0	0	NA	0	0	NA	1.58E-18	17.72953575	16	1	0.270464248	16	2	0.729535752	unphased	1.571124709	0.785562355	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214025838	10	10075248	T	C	-	-	-	-	-	-	41	0	0	82	19	23.17073171	0	0	NA	0	0	NA	2.79E-26	5.31519888	4	1	0.68480112	4	2	0.31519888	unphased	1.821370916	1.081059891	1.68480112	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214025926	10	10321195	T	C	-	-	-	-	-	-	29	0	0	98	24	24.48979592	0	0	NA	0	0	NA	1.92E-33	5.264024235	4	1	0.735975765	4	2	0.264024235	unphased	1.912525416	0.956262708	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214026187	10	12153835	T	C	DHTKD1	CCDS7087.1	r.?	-	-	intronic	35	0	0	107	15	14.01869159	0	0	NA	0	0	NA	1.49E-17	5.264024235	4	1	0.735975765	4	2	0.264024235	unphased	1.094786745	1.094786745	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214026875	10	16777524	G	C	RSU1	CCDS7112.1	r.?	-	-	intronic	30	0	0	105	19	18.0952381	0	0	NA	1	0	0	4.65E-24	4.370996424	3	1	0.629003576	4	1	0.370996424	unphased	1.251548271	1.251548271	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214026876	10	16777578	G	C	RSU1	CCDS7112.1	r.?	-	-	intronic	33	0	0	103	16	15.53398058	0	0	NA	0	0	NA	2.27E-19	4.370996424	3	1	0.629003576	4	1	0.370996424	unphased	1.074400151	1.074400151	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214026883	10	16828778	G	C	RSU1	CCDS7112.1	r.?	-	-	intronic	37	0	0	79	24	30.37974684	0	0	NA	0	0	NA	5.20E-36	4.370996424	3	1	0.629003576	4	1	0.370996424	unphased	2.101200295	1.050600147	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214026893	10	16894815	A	C	CUBN	CCDS7113.1	r.?	-	-	intronic	28	0	0	100	26	26	0	0	NA	0	0	NA	7.29E-37	4.370996424	3	1	0.629003576	4	1	0.370996424	unphased	1.798277252	0.899138626	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214026909	10	17031125	T	C	CUBN	CCDS7113.1	r.?	-	-	intronic	37	0	0	57	6	10.52631579	0	0	NA	0	0	NA	4.56E-07	4.370996424	3	1	0.629003576	4	1	0.370996424	unphased	0.728047471	0.728047471	1	0.00875	0.99125	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214026994	10	18236370	G	C	SLC39A12	CCDS44362.1	r.?	-	-	upstream	37	0	0	72	21	29.16666667	0	0	NA	0	0	NA	2.89E-31	3.34128339	2	1	0.65871661	2	2	0.34128339	unphased	1.716965231	1.03511668	1.65871661	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214026996	10	18261830	A	C	SLC39A12	CCDS44362.1	r.?	-	-	intronic	39	0	0	57	9	15.78947368	0	0	NA	0	0	NA	1.42E-11	3.34128339	2	1	0.65871661	2	2	0.34128339	unphased	0.929484937	0.929484937	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214027098	10	18968704	G	C	ARL5B	CCDS7131.1	r.5332g>c	c.?	p.?	3'UTR variant	36	0	0	119	25	21.00840336	0	0	NA	0	0	NA	6.26E-33	5	4	1	1	NA	NA	NA	unphased	1.585179526	0.792589763	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214027264	10	21086250	T	C	NEBL	CCDS7134.1	r.?	-	-	intronic	44	0	0	115	29	25.2173913	0	0	NA	0	0	NA	1.68E-40	6	5	1	1	NA	NA	NA	unphased	2.154940711	1.077470356	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214027392	10	21904984	T	C	MLLT10	CCDS7135.1	r.?	-	-	intronic	33	0	0	44	13	29.54545455	0	0	NA	0	0	NA	5.49E-20	3.282348422	2	1	0.717651578	2	2	0.282348422	unphased	1.721850877	1.002444791	1.717651578	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214027474	10	23416899	G	C	-	-	-	-	-	-	28	0	0	66	8	12.12121212	0	0	NA	0	0	NA	1.73E-09	3.282348422	2	1	0.717651578	2	2	0.282348422	unphased	0.70640036	0.70640036	1	0.0125	0.9875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214027955	10	28114421	T	C	ARMC4	CCDS7157.1	r.?	-	-	intronic	30	0	0	80	19	23.75	0	0	NA	0	0	NA	1.65E-26	3.282348422	2	1	0.717651578	2	2	0.282348422	unphased	1.384103205	1.384103205	1	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214028182	10	30634484	G	C	MTPAP	CCDS7165.1	r.?	-	-	intronic	25	0	0	63	22	34.92063492	0	0	NA	0	0	NA	1.03E-34	3.282348422	2	1	0.717651578	2	2	0.282348422	unphased	2.035105798	1.017552899	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214028189	10	30761540	G	C	-	-	-	-	-	-	27	0	0	68	13	19.11764706	0	0	NA	0	0	NA	2.96E-17	3.282348422	2	1	0.717651578	2	2	0.282348422	unphased	1.114138803	1.114138803	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214028298	10	32373946	T	C	-	-	-	-	-	-	34	0	0	57	13	22.80701754	0	0	NA	0	0	NA	2.44E-18	3.282348422	2	1	0.717651578	2	2	0.282348422	unphased	1.329148045	1.329148045	1	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214028697	10	37916622	T	C	-	-	-	-	-	-	36	0	0	53	11	20.75471698	0	0	NA	0	0	NA	3.07E-15	3.282348422	2	1	0.717651578	2	2	0.282348422	unphased	1.209544012	1.209544012	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214031270	10	44605153	G	C	-	-	-	-	-	-	22	0	0	63	5	7.936507937	0	0	NA	0	0	NA	1.73E-05	2.384744114	1	1	0.615255886	2	1	0.384744114	unphased	0.391285608	1.017002192	0.384744114	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214031303	10	45181463	G	C	-	-	-	-	-	-	28	0	0	66	15	22.72727273	0	0	NA	0	0	NA	6.45E-21	2.384744114	1	1	0.615255886	2	1	0.384744114	unphased	1.120499695	1.120499695	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214031733	10	53518674	T	C	PRKG1	CCDS7244.1	r.?	-	-	intronic	32	0	0	53	17	32.0754717	0	0	NA	0	0	NA	2.08E-26	2.384744114	1	1	0.615255886	2	1	0.384744114	unphased	1.581384476	1.142004836	1.384744114	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214032002	10	57572684	T	C	-	-	-	-	-	-	26	0	0	48	6	12.5	0	0	NA	0	0	NA	1.60E-07	2	1	1	1	NA	NA	NA	unphased	0.568181818	0.568181818	1	0.02625	0.97375	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214032149	10	59559545	G	C	-	-	-	-	-	-	35	0	0	62	15	24.19354839	0	0	NA	0	0	NA	2.28E-21	2	1	1	1	NA	NA	NA	unphased	1.099706745	1.099706745	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214032274	10	61300225	G	C	-	-	-	-	-	-	31	0	0	54	13	24.07407407	0	0	NA	0	0	NA	1.12E-18	2	1	1	1	NA	NA	NA	unphased	1.094276094	1.094276094	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214032334	10	61931017	T	C	ANK3	CCDS7258.1	r.?	-	-	intronic	32	0	0	55	10	18.18181818	0	0	NA	0	0	NA	2.33E-13	2	1	1	1	NA	NA	NA	unphased	0.826446281	0.826446281	1	0.005	0.995	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214032570	10	65162070	A	C	JMJD1C	CCDS41532.1	r.?	-	-	intronic	37	0	0	63	17	26.98412698	0	0	NA	0	0	NA	6.22E-25	2	1	1	1	NA	NA	NA	unphased	1.226551227	1.226551227	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214033573	10	78383524	G	C	-	-	-	-	-	-	35	0	0	59	16	27.11864407	0	0	NA	0	0	NA	1.37E-23	4	2	2	1	NA	NA	NA	unphased	1.775038521	0.88751926	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214033588	10	78575219	G	C	-	-	-	-	-	-	8	0	0	63	12	19.04761905	0	0	NA	0	0	NA	5.15E-16	4	2	2	1	NA	NA	NA	unphased	1.246753247	1.246753247	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214033646	10	79312687	G	C	KCNMA1	CCDS7352.1	r.?	-	-	intronic	17	0	0	47	15	31.91489362	0	0	NA	0	0	NA	1.97E-23	4	2	2	1	NA	NA	NA	unphased	2.088974855	1.044487427	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214033837	10	82164467	G	C	C10orf57	CCDS7368.1	r.?	-	-	upstream	33	0	0	72	9	12.5	1	0	0	0	0	NA	1.25E-10	4	2	2	1	NA	NA	NA	unphased	0.818181818	0.818181818	1	0.005	0.995	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214033931	10	84277237	T	C	NRG3	CCDS31233.1	r.?	-	-	intronic	38	0	0	60	11	18.33333333	0	0	NA	0	0	NA	1.34E-14	4	2	2	1	NA	NA	NA	unphased	1.2	1.2	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214033946	10	84662768	G	C	NRG3	CCDS31233.1	r.?	-	-	intronic	29	0	0	75	13	17.33333333	0	0	NA	0	0	NA	1.16E-16	4	2	2	1	NA	NA	NA	unphased	1.134545455	1.134545455	1	0.00125	0.9975	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214033966	10	84941750	T	C	-	-	-	-	-	-	29	0	0	54	15	27.77777778	0	0	NA	0	0	NA	2.20E-22	4	2	2	1	NA	NA	NA	unphased	1.818181818	0.909090909	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214034095	10	87130072	G	C	-	-	-	-	-	-	29	0	0	52	14	26.92307692	0	0	NA	0	0	NA	9.04E-21	4	2	2	1	NA	NA	NA	unphased	1.762237762	0.881118881	2	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214034376	10	92313018	G	C	-	-	-	-	-	-	32	0	0	87	20	22.98850575	0	0	NA	0	0	NA	1.65E-27	4	2	2	1	NA	NA	NA	unphased	1.504702194	0.752351097	2	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214034449	10	93548695	T	C	-	-	-	-	-	-	27	0	0	64	23	35.9375	0	0	NA	0	0	NA	1.44E-36	4	2	2	1	NA	NA	NA	unphased	2.352272727	1.176136364	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214034548	10	94591711	G	C	EXOC6	CCDS31247.1	r.?	-	-	upstream	28	0	0	77	10	12.98701299	0	0	NA	0	0	NA	7.90E-12	4	2	2	1	NA	NA	NA	unphased	0.850059032	0.850059032	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214034728	10	97033350	G	C	PDLIM1	CCDS7441.1	r.?	-	-	intronic	38	0	0	77	13	16.88311688	0	0	NA	0	0	NA	1.67E-16	4	2	2	1	NA	NA	NA	unphased	1.105076741	1.105076741	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214035028	10	101557748	T	C	ABCC2	CCDS7484.1	r.?	-	-	intronic	28	0	0	51	13	25.49019608	0	0	NA	0	0	NA	4.87E-19	4	2	2	1	NA	NA	NA	unphased	1.668449198	0.834224599	2	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214035128	10	103116479	G	C	BTRC	CCDS7512.1	r.?	-	-	intronic	17	0	0	60	16	26.66666667	0	0	NA	0	0	NA	1.86E-23	4	2	2	1	NA	NA	NA	unphased	1.745454545	0.872727273	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214035313	10	105439281	G	C	SH3PXD2A	CCDS31278.1	r.?	-	-	intronic	16	0	0	77	17	22.07792208	0	0	NA	0	0	NA	2.82E-23	4	2	2	1	NA	NA	NA	unphased	1.445100354	1.445100354	1	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214035323	10	105573074	T	C	SH3PXD2A	CCDS31278.1	r.?	-	-	intronic	18	0	0	64	8	12.5	0	0	NA	0	0	NA	1.35E-09	4	2	2	1	NA	NA	NA	unphased	0.818181818	0.818181818	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214035374	10	106530241	A	C	SORCS3	CCDS7558.1	r.?	-	-	intronic	23	0	0	48	17	35.41666667	0	0	NA	0	0	NA	2.80E-27	4	2	2	1	NA	NA	NA	unphased	2.318181818	1.159090909	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214035414	10	107160239	T	C	-	-	-	-	-	-	39	0	0	61	9	14.75409836	0	0	NA	0	0	NA	2.68E-11	4	2	2	1	NA	NA	NA	unphased	0.965722802	0.965722802	1	0.00125	0.9975	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214035534	10	108990371	A	C	-	-	-	-	-	-	22	0	0	60	16	26.66666667	0	0	NA	0	0	NA	1.86E-23	4	2	2	1	NA	NA	NA	unphased	1.745454545	0.872727273	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214035654	10	110974964	T	C	-	-	-	-	-	-	30	0	0	68	22	32.35294118	0	0	NA	0	0	NA	7.67E-34	4	2	2	1	NA	NA	NA	unphased	2.117647059	1.058823529	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214035699	10	111684624	T	C	XPNPEP1	CCDS7560.1	r.?	-	-	upstream	41	0	0	79	26	32.91139241	0	0	NA	0	0	NA	5.99E-40	4	2	2	1	NA	NA	NA	unphased	2.15420023	1.077100115	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214036005	10	115452769	T	C	CASP7	CCDS7580.1	r.?	-	-	intronic	33	0	0	76	23	30.26315789	0	0	NA	0	0	NA	1.58E-34	4	2	2	1	NA	NA	NA	unphased	1.980861244	0.990430622	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214036230	10	117682323	G	C	ATRNL1	CCDS7592.1	r.?	-	-	intronic	57	0	0	79	11	13.92405063	0	0	NA	0	0	NA	3.23E-13	4	2	2	1	NA	NA	NA	unphased	0.911392405	0.911392405	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214036294	10	118421666	A	C	C10orf82	CCDS7596.1	r.?	-	-	downstream	30	0	0	68	12	17.64705882	0	0	NA	0	0	NA	1.37E-15	4	2	2	1	NA	NA	NA	unphased	1.155080214	1.155080214	1	0.00125	0.9975	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214036327	10	118955730	G	C	KCNK18	CCDS7598.1	r.?	-	-	upstream	31	0	0	69	15	21.73913043	0	0	NA	0	0	NA	1.34E-20	4	2	2	1	NA	NA	NA	unphased	1.422924901	1.422924901	1	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214036546	10	121530389	T	C	INPP5F	CCDS7616.1	r.?	-	-	intronic	31	0	0	69	9	13.04347826	0	0	NA	0	0	NA	8.45E-11	4	2	2	1	NA	NA	NA	unphased	0.853754941	0.853754941	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214036662	10	122970689	G	C	-	-	-	-	-	-	31	0	0	77	23	29.87012987	0	0	NA	0	0	NA	2.24E-34	4	2	2	1	NA	NA	NA	unphased	1.955135773	0.977567887	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214036683	10	123229145	G	C	-	-	-	-	-	-	13	0	0	67	10	14.92537313	0	0	NA	0	0	NA	1.87E-12	4	2	2	1	NA	NA	NA	unphased	0.976933514	0.976933514	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214037417	10	132361022	T	C	-	-	-	-	-	-	22	0	0	61	12	19.67213115	0	0	NA	0	0	NA	3.39E-16	4	2	2	1	NA	NA	NA	unphased	1.287630402	1.287630402	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214038015	11	2729166	G	C	KCNQ1	CCDS7736.1	r.?	-	-	intronic	6	0	0	47	6	12.76595745	0	0	NA	0	0	NA	1.41E-07	3	2	1	1	NA	NA	NA	unphased	0.707930368	0.707930368	1	0.0125	0.9875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214038298	11	5941199	T	C	TRIM5	ENST00000412903	r.?	-	-	intronic	25	0	0	51	6	11.76470588	0	0	NA	0	0	NA	2.32E-07	3	2	1	1	NA	NA	NA	unphased	0.652406417	0.652406417	1	0.01	0.99	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214038345	11	6841726	G	C	-	-	-	-	-	-	40	0	0	78	17	21.79487179	0	0	NA	0	0	NA	3.59E-23	3	2	1	1	NA	NA	NA	unphased	1.208624709	1.208624709	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214038406	11	7902774	T	C	-	-	-	-	-	-	30	0	0	64	18	28.125	0	0	NA	0	0	NA	1.10E-26	3	2	1	1	NA	NA	NA	unphased	1.559659091	0.779829545	2	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214038411	11	8047845	G	C	-	-	-	-	-	-	22	0	0	66	11	16.66666667	0	0	NA	0	0	NA	4.07E-14	3	2	1	1	NA	NA	NA	unphased	0.924242424	0.924242424	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214038611	11	11044717	T	C	-	-	-	-	-	-	31	0	0	61	6	9.836065574	0	0	NA	0	0	NA	6.85E-07	3	2	1	1	NA	NA	NA	unphased	0.545454545	0.545454545	1	0.03	0.97	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214038953	11	16974792	G	C	PLEKHA7	CCDS31434.1	r.?	-	-	intronic	34	0	0	57	4	7.01754386	0	0	NA	0	0	NA	0.000199821	3	2	1	1	NA	NA	NA	unphased	0.389154705	0.389154705	1	0.115	0.885	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214039353	11	22762516	T	C	GAS2	CCDS7858.1	r.?	-	-	intronic	40	0	0	71	14	19.71830986	0	0	NA	0	0	NA	1.13E-18	3	2	1	1	NA	NA	NA	unphased	1.09346991	1.09346991	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214039574	11	25581118	T	C	-	-	-	-	-	-	35	0	0	53	12	22.64150943	0	0	NA	0	0	NA	5.39E-17	3	2	1	1	NA	NA	NA	unphased	1.255574614	1.255574614	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214039851	11	30426391	G	C	MPPED2	CCDS44560.1	r.?	-	-	intronic	32	0	0	70	11	15.71428571	0	0	NA	0	0	NA	8.06E-14	3	2	1	1	NA	NA	NA	unphased	0.871428571	0.871428571	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214039882	11	30888469	T	C	DCDC5	ENST00000429306	r.?	-	-	intronic	42	0	0	67	6	8.955223881	0	0	NA	0	0	NA	1.20E-06	3	2	1	1	NA	NA	NA	unphased	0.49660787	0.49660787	1	0.0525	0.9475	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214039899	11	31181953	A	C	ENSG00000226746	ENST00000399333	r.?	-	-	intronic	24	0	0	62	24	38.70967742	0	0	NA	0	0	NA	4.81E-39	3	2	1	1	NA	NA	NA	unphased	2.146627566	1.073313783	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214040712	11	43241881	A	C	-	-	-	-	-	-	30	0	0	63	11	17.46031746	0	0	NA	0	0	NA	2.37E-14	2.86642458	1	1	0.13357542	2	1	0.86642458	unphased	0.944931276	0.944931276	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214040720	11	43442314	T	C	TTC17	CCDS31466.1	r.?	-	-	intronic	42	0	0	69	21	30.43478261	0	0	NA	0	0	NA	1.02E-31	2.86642458	1	1	0.13357542	2	1	0.86642458	unphased	1.647093647	0.882486045	1.86642458	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214040757	11	43974657	T	C	-	-	-	-	-	-	30	0	0	71	23	32.3943662	0	0	NA	0	0	NA	2.51E-35	2.86642458	1	1	0.13357542	2	1	0.86642458	unphased	1.753143942	0.939306072	1.86642458	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214040812	11	44690586	G	C	-	-	-	-	-	-	24	0	0	59	22	37.28813559	0	0	NA	0	0	NA	1.79E-35	2.86642458	1	1	0.13357542	2	1	0.86642458	unphased	2.017988827	1.081205663	1.86642458	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214041405	11	49418560	G	C	-	-	-	-	-	-	26	0	0	63	10	15.87301587	0	0	NA	0	0	NA	9.81E-13	2.86642458	1	1	0.13357542	2	1	0.86642458	unphased	0.859028433	0.991463599	0.86642458	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214041773	11	51413700	A	C	OR4A5	CCDS31497.1	r.?	-	-	upstream	45	0	0	72	10	13.88888889	0	0	NA	0	0	NA	3.95E-12	2.86642458	1	1	0.13357542	2	1	0.86642458	unphased	0.751649879	0.867530649	0.86642458	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214042076	11	55547925	A	C	-	-	-	-	-	-	27	0	0	65	15	23.07692308	0	0	NA	0	0	NA	5.00E-21	2.86642458	1	1	0.13357542	2	1	0.86642458	unphased	1.248895183	1.248895183	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214042366	11	60064474	G	C	MS4A4A	CCDS7982.1	r.?	-	-	intronic	39	0	0	66	5	7.575757576	0	0	NA	0	0	NA	2.17E-05	2.86642458	1	1	0.13357542	2	1	0.86642458	unphased	0.409990843	0.473198536	0.86642458	0.0525	0.9475	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214043469	11	71621908	G	C	-	-	-	-	-	-	18	0	0	49	22	44.89795918	0	0	NA	0	0	NA	1.04E-37	3.115135856	3	0	0.884864144	3	1	0.115135856	unphased	2.541489568	0.880973745	2.884864144	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214043658	11	73919671	G	C	PPME1	CCDS44678.1	r.?	-	-	intronic	40	0	0	76	6	7.894736842	0	0	NA	0	0	NA	2.53E-06	3.115135856	3	0	0.884864144	3	1	0.115135856	unphased	0.446888716	0.446888716	1	0.1425	0.8575	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214044496	11	87443277	T	C	-	-	-	-	-	-	30	0	0	48	29	60.41666667	0	0	NA	0	0	NA	1.96E-54	2.61870717	2	0	0.38129283	3	0	0.61870717	unphased	3.12001437	1.191433088	2.61870717	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214044548	11	88427819	T	C	GRM5	CCDS44694.1	r.?	-	-	intronic	41	0	0	63	17	26.98412698	0	0	NA	0	0	NA	6.22E-25	2.61870717	2	0	0.38129283	3	0	0.61870717	unphased	1.393503955	1.393503955	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214044633	11	89814819	T	C	UBTFL3	CCDS44704.1	r.?	-	-	upstream	41	0	0	77	18	23.37662338	0	0	NA	0	0	NA	4.71E-25	2.61870717	2	0	0.38129283	3	0	0.61870717	unphased	1.207206635	1.207206635	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214044813	11	92992114	A	C	-	-	-	-	-	-	34	0	0	60	22	36.66666667	0	0	NA	0	0	NA	2.81E-35	2.61870717	2	0	0.38129283	3	0	0.61870717	unphased	1.893525962	0.946762981	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214044905	11	94097918	G	C	-	-	-	-	-	-	29	0	0	53	18	33.96226415	0	0	NA	0	0	NA	2.09E-28	2.61870717	2	0	0.38129283	3	0	0.61870717	unphased	1.753866243	1.083498162	1.61870717	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214045069	11	97138930	T	C	-	-	-	-	-	-	42	0	0	52	14	26.92307692	0	0	NA	0	0	NA	9.04E-21	2.61870717	2	0	0.38129283	3	0	0.61870717	unphased	1.390351231	1.390351231	1	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214045070	11	97201250	G	C	-	-	-	-	-	-	43	0	0	64	13	20.3125	0	0	NA	0	0	NA	1.26E-17	2.61870717	2	0	0.38129283	3	0	0.61870717	unphased	1.048970348	1.048970348	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214045500	11	102412044	T	C	-	-	-	-	-	-	32	0	0	65	11	16.92307692	0	0	NA	0	0	NA	3.41E-14	2.61870717	2	0	0.38129283	3	0	0.61870717	unphased	0.87393506	0.87393506	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214046211	11	112419253	T	C	-	-	-	-	-	-	44	0	0	63	29	46.03174603	0	0	NA	0	0	NA	1.20E-49	2.61870717	2	0	0.38129283	3	0	0.61870717	unphased	2.377153805	0.907758543	2.61870717	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214046971	11	122415826	G	C	-	-	-	-	-	-	27	0	0	51	9	17.64705882	0	0	NA	0	0	NA	4.92E-12	2.61870717	2	0	0.38129283	3	0	0.61870717	unphased	0.911322656	0.911322656	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214047684	11	132197731	T	C	OPCML	CCDS8491.1	r.?	-	-	intronic	31	0	0	56	7	12.5	0	0	NA	0	0	NA	1.46E-08	2.49427502	2	0	0.50572498	3	0	0.49427502	unphased	0.629966196	1.274525658	0.49427502	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214047951	12	232775	G	C	IQSEC3	CCDS31725.1	r.?	-	-	intronic	15	0	0	146	15	10.2739726	0	0	NA	0	0	NA	1.75E-15	15	13	2	1	NA	NA	NA	unphased	1.802615193	0.901307597	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214048127	12	698452	G	C	NINJ2	CCDS8505.1	r.?	-	-	intronic	32	0	0	164	9	5.487804878	0	0	NA	0	0	NA	1.84E-07	15	13	2	1	NA	NA	NA	unphased	0.96286031	0.96286031	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214048325	12	1060779	G	C	RAD52	CCDS8507.2	r.?	-	-	upstream	33	0	0	188	11	5.85106383	0	0	NA	2	0	0	4.18E-09	15	13	2	1	NA	NA	NA	unphased	1.026595745	1.026595745	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214048617	12	1536337	G	C	ERC1	CCDS8508.1	r.?	-	-	intronic	23	0	0	236	13	5.508474576	0	0	NA	0	0	NA	3.50E-10	15	13	2	1	NA	NA	NA	unphased	0.966486903	0.966486903	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214049571	12	5803073	T	C	ANO2	CCDS44807.1	r.?	-	-	intronic	23	0	0	204	26	12.74509804	0	0	NA	0	0	NA	3.33E-28	15	13	2	1	NA	NA	NA	unphased	2.236185383	1.118092692	2	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214050018	12	7417618	T	C	-	-	-	-	-	-	21	0	0	102	12	11.76470588	0	0	NA	0	0	NA	2.18E-13	9	7	2	1	NA	NA	NA	unphased	1.35828877	1.35828877	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214050261	12	8434635	G	C	-	-	-	-	-	-	35	0	0	104	12	11.53846154	0	0	NA	0	0	NA	2.76E-13	9	7	2	1	NA	NA	NA	unphased	1.332167832	1.332167832	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214050357	12	8814899	G	C	MFAP5	CCDS8595.1	r.?	-	-	intronic	31	0	0	170	27	15.88235294	0	0	NA	0	0	NA	6.46E-32	10.44259323	9	1	0.557406766	9	2	0.442593234	unphased	2.062807588	1.031403794	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214051289	12	11956805	G	C	ETV6	CCDS8643.1	r.?	-	-	intronic	48	0	0	137	21	15.32846715	0	0	NA	0	0	NA	7.92E-25	8.227310559	7	1	0.772689441	7	2	0.227310559	unphased	1.651299761	0.931522309	1.772689441	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214051479	12	12329375	T	C	LRP6	CCDS8647.1	r.?	-	-	intronic	29	0	0	250	15	6	0	0	NA	0	0	NA	4.71E-12	18	16	2	1	NA	NA	NA	unphased	1.232727273	1.232727273	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214051538	12	12448897	A	C	-	-	-	-	-	-	24	0	0	161	5	3.105590062	0	0	NA	0	0	NA	0.001388127	18	16	2	1	NA	NA	NA	unphased	0.638057595	0.638057595	1	0.0075	0.9925	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214052363	12	15604873	G	C	PTPRO	CCDS8675.1	r.?	-	-	intronic	30	0	0	202	6	2.97029703	0	0	NA	0	0	NA	0.000594063	10.39661528	9	1	0.603384719	9	2	0.396615281	unphased	0.384417916	0.969246356	0.396615281	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214052438	12	15847948	T	C	EPS8	CCDS31753.1	r.?	-	-	intronic	32	1	3.125	155	8	5.161290323	0	0	NA	0	0	NA	1.40E-06	10.39661528	9	1	0.603384719	9	2	0.396615281	unphased	0.667977797	0.667977797	1	0.01125	0.98875	0	2	0.14819814	1	1	NA	NA	NA	NA
1352322	PD9768b	1214052919	12	18055281	T	C	-	-	-	-	-	-	32	0	0	218	12	5.504587156	0	0	NA	0	0	NA	1.67E-09	13.23055981	12	1	0.769440192	12	2	0.230559808	unphased	0.86840446	0.86840446	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214053121	12	18588904	A	C	PIK3C2G	CCDS44839.1	r.?	-	-	intronic	46	0	0	221	12	5.429864253	0	0	NA	0	0	NA	1.95E-09	13.23055981	12	1	0.769440192	12	2	0.230559808	unphased	0.856616164	0.856616164	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214053410	12	19447037	G	C	PLEKHA5	CCDS44840.1	r.?	-	-	intronic	33	0	0	207	11	5.314009662	0	0	NA	0	0	NA	1.14E-08	13.23055981	12	1	0.769440192	12	2	0.230559808	unphased	0.838338927	0.838338927	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214053626	12	19778167	A	C	-	-	-	-	-	-	13	0	0	222	27	12.16216216	2	0	0	0	0	NA	1.15E-28	13.23055981	12	1	0.769440192	12	2	0.230559808	unphased	1.918704448	0.959352224	2	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214054063	12	20747282	G	C	PDE3A	CCDS31754.1	r.?	-	-	intronic	42	0	0	217	15	6.912442396	0	0	NA	0	0	NA	6.15E-13	19.33517885	18	1	0.664821146	18	2	0.335178854	unphased	1.51248618	1.51248618	1	0	0.99625	0.00375	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214054458	12	21276214	G	C	-	-	-	-	-	-	37	0	0	282	13	4.609929078	0	0	NA	0	0	NA	3.03E-09	19.33517885	18	1	0.664821146	18	2	0.335178854	unphased	1.008681682	1.008681682	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214054902	12	21976081	T	C	ABCC9	CCDS8693.1	r.?	-	-	intronic	29	0	0	279	14	5.017921147	0	0	NA	0	0	NA	2.53E-10	19.33517885	18	1	0.664821146	18	2	0.335178854	unphased	1.09795293	1.09795293	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214055064	12	22336667	A	C	-	-	-	-	-	-	22	0	0	278	8	2.877697842	0	0	NA	2	0	0	9.47E-05	19.33517885	18	1	0.664821146	18	2	0.335178854	unphased	0.629658515	0.629658515	1	0.01375	0.98625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214055340	12	23096621	G	C	-	-	-	-	-	-	40	0	0	184	20	10.86956522	0	0	NA	0	0	NA	1.22E-20	12	11	1	1	NA	NA	NA	unphased	1.581027668	0.790513834	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214055714	12	24261351	A	C	-	-	-	-	-	-	50	0	0	232	123	53.01724138	0	0	NA	0	0	NA	1.30E-215	12	11	1	1	NA	NA	NA	unphased	7.711598746	0.963949843	8	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214056070	12	25636291	A	C	IFLTD1	CCDS44849.1	r.?	-	-	intronic	22	0	0	98	9	9.183673469	0	0	NA	0	0	NA	2.06E-09	10.33066294	9	1	0.669337059	9	2	0.330662941	unphased	1.182500586	1.182500586	1	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214056071	12	25636292	G	C	IFLTD1	CCDS44849.1	r.?	-	-	intronic	23	0	0	91	9	9.89010989	0	0	NA	0	0	NA	1.06E-09	10.33066294	9	1	0.669337059	9	2	0.330662941	unphased	1.273462169	1.273462169	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214056306	12	26191634	T	C	RASSF8	CCDS8705.1	r.?	-	-	intronic	31	0	0	376	18	4.787234043	0	0	NA	0	0	NA	1.63E-12	19	17	2	1	NA	NA	NA	unphased	1.031431335	1.031431335	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214056853	12	27441325	T	C	STK38L	CCDS31761.1	r.?	-	-	intronic	30	0	0	202	11	5.445544554	0	0	NA	0	0	NA	8.83E-09	19	17	2	1	NA	NA	NA	unphased	1.173267327	1.173267327	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214056858	12	27456182	G	C	STK38L	CCDS31761.1	r.?	-	-	intronic	29	0	0	206	8	3.883495146	0	0	NA	2	0	0	1.14E-05	19	17	2	1	NA	NA	NA	unphased	0.836716681	0.836716681	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214057437	12	29310163	A	C	-	-	-	-	-	-	18	0	0	278	15	5.395683453	0	0	NA	0	0	NA	2.12E-11	20	19	1	1	NA	NA	NA	unphased	1.21648136	1.21648136	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214057659	12	29763057	T	C	TMTC1	CCDS8718.1	r.?	-	-	intronic	33	0	0	247	21	8.502024291	1	0	0	0	0	NA	2.33E-19	20	19	1	1	NA	NA	NA	unphased	1.916820022	0.958410011	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214058051	12	31700983	T	C	DENND5B	CCDS44857.1	r.?	-	-	intronic	22	0	0	113	26	23.00884956	0	0	NA	0	0	NA	2.57E-35	8	6	2	1	NA	NA	NA	unphased	2.426387772	0.808795924	3	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214058541	12	34285327	T	C	AC046130.1	ENST00000501954	r.?	-	-	intronic	34	0	0	102	8	7.843137255	0	0	NA	0	0	NA	5.64E-08	8	6	2	1	NA	NA	NA	unphased	0.827094474	0.827094474	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214058633	12	34423357	A	C	-	-	-	-	-	-	39	0	0	110	67	60.90909091	0	0	NA	0	0	NA	3.95E-124	8	6	2	1	NA	NA	NA	unphased	6.423140496	1.070523416	6	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214059608	12	41603980	A	C	PDZRN4	ENST00000402685	r.?	-	-	intronic	32	0	0	59	7	11.86440678	0	0	NA	0	0	NA	2.12E-08	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	0.600169647	1.16965186	0.513118191	0.00125	0.995	0.00375	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214059642	12	42235009	A	C	-	-	-	-	-	-	22	0	0	58	16	27.5862069	0	0	NA	0	0	NA	1.00E-23	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	1.395468341	1.395468341	1	0	0.99625	0.00375	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214059717	12	43052429	G	C	-	-	-	-	-	-	25	0	0	79	13	16.4556962	0	0	NA	0	0	NA	2.37E-16	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	0.832423362	0.832423362	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214059810	12	44648508	G	C	TMEM117	CCDS8745.1	r.?	-	-	intronic	22	0	0	33	7	21.21212121	0	0	NA	0	0	NA	2.98E-10	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	1.073030581	1.073030581	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214059838	12	45164442	T	C	NELL2	CCDS8746.1	r.?	-	-	intronic	37	0	0	74	25	33.78378378	0	0	NA	0	0	NA	8.25E-39	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	1.708977276	1.129440704	1.513118191	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214060257	12	50595903	G	C	LIMA1	CCDS44877.1	r.?	-	-	intronic	21	0	0	61	15	24.59016393	0	0	NA	0	0	NA	1.73E-21	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	1.243911329	1.243911329	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214060742	12	55614390	G	C	OR10A7	CCDS31815.1	r.?	-	-	upstream	42	0	0	75	19	25.33333333	0	0	NA	0	0	NA	4.19E-27	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	1.281505093	1.281505093	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214060844	12	56893575	G	C	-	-	-	-	-	-	35	0	0	66	6	9.090909091	0	0	NA	0	0	NA	1.10E-06	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	0.459870249	0.89622675	0.513118191	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214061309	12	63523356	A	C	-	-	-	-	-	-	45	0	0	87	21	24.13793103	0	0	NA	0	0	NA	2.64E-29	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	1.221034799	1.221034799	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214061571	12	67280989	T	C	-	-	-	-	-	-	38	1	2.631578947	75	20	26.66666667	104	0	0	165	47	28.48484848	5.89E-29	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	1.34895273	1.34895273	1	0	1	0	2	0.173434892	1.78E-67	1	YES	1_1	somatic	custom.pulldown.HiSeq
1352322	PD9768b	1214061582	12	67432434	A	C	-	-	-	-	-	-	34	0	0	82	21	25.6097561	0	0	NA	0	0	NA	6.53E-30	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	1.29548814	1.29548814	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214062062	12	74852535	G	C	-	-	-	-	-	-	32	0	0	54	17	31.48148148	0	0	NA	0	0	NA	3.02E-26	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	1.592513639	1.052471412	1.513118191	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214062146	12	76201806	A	C	-	-	-	-	-	-	29	0	0	61	20	32.78688525	0	0	NA	0	0	NA	4.89E-31	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	1.658548438	1.096112946	1.513118191	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214062180	12	76513320	A	C	-	-	-	-	-	-	26	0	0	60	11	18.33333333	0	0	NA	0	0	NA	1.34E-14	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	0.927405002	0.927405002	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214062217	12	77115335	A	C	-	-	-	-	-	-	33	0	0	63	15	23.80952381	0	0	NA	0	0	NA	2.97E-21	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	1.20442208	1.20442208	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214062268	12	77699125	G	C	-	-	-	-	-	-	31	0	0	50	5	10	0	0	NA	0	0	NA	5.49E-06	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	0.505857274	0.985849425	0.513118191	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214062279	12	77978730	T	C	-	-	-	-	-	-	31	0	0	70	21	30	0	0	NA	0	0	NA	1.45E-31	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	1.517571821	1.002943346	1.513118191	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214062358	12	79080173	T	C	-	-	-	-	-	-	26	0	0	72	12	16.66666667	0	0	NA	0	0	NA	2.84E-15	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	0.843095456	0.843095456	1	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214063103	12	91711030	G	C	-	-	-	-	-	-	43	0	0	74	14	18.91891892	0	0	NA	0	0	NA	2.10E-18	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	0.957027275	0.957027275	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214063177	12	92958601	T	C	-	-	-	-	-	-	24	0	0	57	19	33.33333333	0	0	NA	0	0	NA	1.01E-29	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	1.686190912	1.114381495	1.513118191	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214063262	12	94219035	G	C	CRADD	CCDS9048.1	r.?	-	-	intronic	29	0	0	68	19	27.94117647	0	0	NA	0	0	NA	5.06E-28	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	1.413424735	1.413424735	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214063338	12	95302753	G	C	-	-	-	-	-	-	20	0	0	73	11	15.06849315	0	0	NA	0	0	NA	1.31E-13	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	0.762250686	0.762250686	1	0.00375	0.99625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214063344	12	95367663	T	C	NDUFA12	CCDS9050.1	r.?	-	-	intronic	23	0	0	58	14	24.13793103	0	0	NA	0	0	NA	5.04E-20	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	1.221034799	1.221034799	1	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214063362	12	95596639	T	C	FGD6	CCDS31878.1	r.?	-	-	intronic	26	0	0	81	29	35.80246914	0	0	NA	0	0	NA	1.18E-45	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	1.811093943	1.196928273	1.513118191	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214063522	12	97481902	T	C	-	-	-	-	-	-	28	0	0	67	5	7.462686567	0	0	NA	0	0	NA	2.33E-05	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	0.377505428	0.735708526	0.513118191	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214063592	12	98545728	G	C	-	-	-	-	-	-	33	0	0	45	4	8.888888889	0	0	NA	0	0	NA	7.91E-05	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	0.44965091	0.8763106	0.513118191	0.00375	0.99625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214063671	12	100006014	T	C	ANKS1B	ENST00000329257	r.?	-	-	intronic	26	0	0	68	19	27.94117647	1	0	0	0	0	NA	5.06E-28	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	1.413424735	1.413424735	1	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214064149	12	106312792	G	C	-	-	-	-	-	-	35	0	0	51	9	17.64705882	0	0	NA	0	0	NA	4.92E-12	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	0.892689306	0.892689306	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214064589	12	113288000	T	C	RPH3A	CCDS31904.1	r.?	-	-	intronic	34	0	0	58	18	31.03448276	0	0	NA	0	0	NA	1.42E-27	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	1.569901884	1.037527599	1.513118191	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214064751	12	115582490	G	C	-	-	-	-	-	-	32	0	0	58	14	24.13793103	0	0	NA	0	0	NA	5.04E-20	3.809816191	2	1	0.190183809	2	2	0.809816191	unphased	1.534030867	1.534030867	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214064821	12	116466872	A	C	MED13L	CCDS9177.1	r.?	-	-	intronic	34	0	0	59	22	37.28813559	0	0	NA	0	0	NA	1.79E-35	3.809816191	2	1	0.190183809	2	2	0.809816191	unphased	2.36976197	1.184880985	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214065017	12	119012906	T	C	-	-	-	-	-	-	24	0	0	46	16	34.7826087	0	0	NA	0	0	NA	1.31E-25	3.809816191	2	1	0.190183809	2	2	0.809816191	unphased	2.210528952	1.105264476	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214065038	12	119420171	G	C	SRRM4	CCDS44994.1	r.?	-	-	intronic	30	0	0	66	22	33.33333333	0	0	NA	0	0	NA	3.52E-34	3.809816191	2	1	0.190183809	2	2	0.809816191	unphased	2.118423579	1.059211789	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214065725	12	128766481	T	C	-	-	-	-	-	-	46	0	0	67	9	13.43283582	0	0	NA	0	0	NA	6.43E-11	3.809816191	2	1	0.190183809	2	2	0.809816191	unphased	0.853693084	1.054181299	0.809816191	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214067721	13	31917199	G	C	-	-	-	-	-	-	24	0	0	84	21	25	0	0	NA	0	0	NA	1.15E-29	4	2	2	1	NA	NA	NA	unphased	1.636363636	0.818181818	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214068130	13	38162355	T	C	POSTN	CCDS9364.1	r.?	-	-	intronic	34	0	0	61	21	34.42622951	0	0	NA	0	0	NA	4.80E-33	3	2	1	1	NA	NA	NA	unphased	1.909090909	0.954545455	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214068152	13	38429626	A	C	TRPC4	CCDS45037.1	r.?	-	-	intronic	30	0	0	51	15	29.41176471	0	0	NA	0	0	NA	8.22E-23	3	2	1	1	NA	NA	NA	unphased	1.631016043	0.815508021	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214068233	13	40071152	G	C	LHFP	CCDS9369.1	r.?	-	-	intronic	26	0	0	66	10	15.15151515	128	0	0	120	22	18.33333333	1.60E-12	3	2	1	1	NA	NA	NA	unphased	0.840220386	0.840220386	1	0.0025	0.9975	0	2	1	9.41E-28	1	YES	1_1	somatic	custom.pulldown.HiSeq
1352322	PD9768b	1214068463	13	43279897	T	C	-	-	-	-	-	-	47	0	0	83	31	37.34939759	0	0	NA	0	0	NA	2.15E-49	3	2	1	1	NA	NA	NA	unphased	2.071193866	1.035596933	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214068738	13	47139380	T	C	LRCH1	CCDS31972.1	r.?	-	-	intronic	25	0	0	63	9	14.28571429	0	0	NA	0	0	NA	3.62E-11	3	2	1	1	NA	NA	NA	unphased	0.792207792	0.792207792	1	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214068847	13	48312420	A	C	-	-	-	-	-	-	40	0	0	61	24	39.3442623	0	0	NA	0	0	NA	2.97E-39	3	2	1	1	NA	NA	NA	unphased	2.181818182	1.090909091	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214068986	13	50454780	G	C	-	-	-	-	-	-	42	0	0	63	7	11.11111111	0	0	NA	0	0	NA	3.38E-08	3	2	1	1	NA	NA	NA	unphased	0.616161616	0.616161616	1	0.01375	0.98625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214069867	13	63707589	A	C	-	-	-	-	-	-	32	0	0	58	7	12.06896552	0	0	NA	0	0	NA	1.88E-08	3	2	1	1	NA	NA	NA	unphased	0.669278997	0.669278997	1	0.005	0.995	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214069906	13	64397940	G	C	-	-	-	-	-	-	19	0	0	49	5	10.20408163	0	0	NA	0	0	NA	4.96E-06	3	2	1	1	NA	NA	NA	unphased	0.565862709	0.565862709	1	0.0225	0.9775	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214070152	13	68227845	T	C	-	-	-	-	-	-	37	0	0	57	5	8.771929825	0	0	NA	0	0	NA	1.05E-05	3	2	1	1	NA	NA	NA	unphased	0.486443381	0.486443381	1	0.03625	0.96375	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214070422	13	72397103	T	C	DACH1	ENST00000305425	r.?	-	-	intronic	33	0	0	49	17	34.69387755	0	0	NA	0	0	NA	4.26E-27	3	2	1	1	NA	NA	NA	unphased	1.92393321	0.961966605	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214071065	13	82542361	G	C	-	-	-	-	-	-	36	0	0	63	22	34.92063492	0	0	NA	0	0	NA	1.03E-34	3	2	1	1	NA	NA	NA	unphased	1.936507937	0.968253968	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214071673	13	92014681	G	C	-	-	-	-	-	-	31	0	0	58	12	20.68965517	0	0	NA	0	0	NA	1.76E-16	3	2	1	1	NA	NA	NA	unphased	1.147335423	1.147335423	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214071847	13	94749245	T	C	GPC6	CCDS9469.1	r.?	-	-	intronic	32	0	0	63	22	34.92063492	0	0	NA	0	0	NA	1.03E-34	3	2	1	1	NA	NA	NA	unphased	1.936507937	0.968253968	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214071856	13	94954446	A	C	GPC6	CCDS9469.1	r.?	-	-	intronic	42	0	0	70	14	20	33	0	0	36	8	22.22222222	9.08E-19	3	2	1	1	NA	NA	NA	unphased	1.109090909	1.109090909	1	0	1	0	2	1	1.04E-11	1	YES	1_1	somatic	custom.pulldown.HiSeq
1352322	PD9768b	1214072310	13	101863034	G	C	NALCN	CCDS9498.1	r.?	-	-	intronic	29	0	0	50	15	30	0	0	NA	0	0	NA	5.83E-23	3	2	1	1	NA	NA	NA	unphased	1.663636364	0.831818182	2	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214072379	13	103045500	G	C	FGF14	CCDS9500.1	r.?	-	-	intronic	33	0	0	74	13	17.56756757	0	0	NA	0	0	NA	9.62E-17	3	2	1	1	NA	NA	NA	unphased	0.974201474	0.974201474	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214072558	13	105937070	G	C	-	-	-	-	-	-	41	0	0	67	9	13.43283582	0	0	NA	0	0	NA	6.43E-11	3	2	1	1	NA	NA	NA	unphased	0.744911805	0.744911805	1	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214072577	13	106231566	T	C	-	-	-	-	-	-	41	0	0	62	10	16.12903226	0	0	NA	0	0	NA	8.29E-13	3	2	1	1	NA	NA	NA	unphased	0.894428152	0.894428152	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214072902	13	110790271	A	C	-	-	-	-	-	-	17	0	0	62	22	35.48387097	0	0	NA	0	0	NA	6.75E-35	3	2	1	1	NA	NA	NA	unphased	1.967741935	0.983870968	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214074110	14	25987518	T	C	-	-	-	-	-	-	36	0	0	62	24	38.70967742	0	0	NA	0	0	NA	4.81E-39	1.777411379	1	0	0.222588621	2	0	0.777411379	unphased	1.673367455	0.941463228	1.777411379	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214074330	14	30712521	T	C	AL121840.1	ENST00000508469	r.?	-	-	intronic	36	0	0	53	22	41.50943396	0	0	NA	0	0	NA	9.50E-37	1.777411379	1	0	0.222588621	2	0	0.777411379	unphased	1.794397176	1.00955648	1.777411379	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214074413	14	32198616	A	C	NUBPL	CCDS41940.1	r.?	-	-	intronic	21	0	0	44	6	13.63636364	0	0	NA	0	0	NA	9.37E-08	1.764536825	1	0	0.235463175	2	0	0.764536825	unphased	0.587726096	0.768734843	0.764536825	0.005	0.995	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214074491	14	34100898	T	C	NPAS3	CCDS9645.1	r.?	-	-	intronic	42	0	0	51	21	41.17647059	0	0	NA	0	0	NA	4.73E-35	1.764536825	1	0	0.235463175	2	0	0.764536825	unphased	1.774702329	1.005761004	1.764536825	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214074752	14	37852928	G	C	MIPOL1	CCDS9664.1	r.?	-	-	intronic	33	0	0	51	20	39.21568627	0	0	NA	0	0	NA	6.38E-33	1.764536825	1	0	0.235463175	2	0	0.764536825	unphased	1.690192694	0.957867623	1.764536825	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214074808	14	38854394	A	C	-	-	-	-	-	-	37	0	0	50	5	10	0	0	NA	0	0	NA	5.49E-06	1.764536825	1	0	0.235463175	2	0	0.764536825	unphased	0.430999137	0.563738885	0.764536825	0.0175	0.9825	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214074956	14	41406407	G	C	-	-	-	-	-	-	38	0	0	60	12	20	0	0	NA	0	0	NA	2.74E-16	1.764536825	1	0	0.235463175	2	0	0.764536825	unphased	0.861998274	1.12747777	0.764536825	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214076395	14	69230391	G	C	-	-	-	-	-	-	30	0	0	43	15	34.88372093	0	0	NA	0	0	NA	4.05E-24	1.764536825	1	0	0.235463175	2	0	0.764536825	unphased	1.503485362	1.503485362	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214077393	14	87045393	T	C	-	-	-	-	-	-	37	0	0	60	29	48.33333333	0	0	NA	0	0	NA	1.83E-50	2.092087904	2	0	0.907912096	2	1	0.092087904	unphased	2.24147885	1.120739425	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214077396	14	87086262	A	C	-	-	-	-	-	-	22	0	0	47	19	40.42553191	0	0	NA	0	0	NA	1.16E-31	2.092087904	2	0	0.907912096	2	1	0.092087904	unphased	1.874751203	0.982619276	1.907912096	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214077560	14	90247246	G	C	-	-	-	-	-	-	27	0	0	46	18	39.13043478	0	0	NA	0	0	NA	9.41E-30	2.092087904	2	0	0.907912096	2	1	0.092087904	unphased	1.814690524	0.951139482	1.907912096	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214078121	14	101524703	A	C	MIR496	ENST00000385226	r.?	-	-	upstream	33	0	0	60	26	43.33333333	0	0	NA	0	0	NA	8.84E-44	2.092087904	2	0	0.907912096	2	1	0.092087904	unphased	2.009601728	1.004800864	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214080156	15	30240114	G	C	-	-	-	-	-	-	12	0	0	52	7	13.46153846	0	0	NA	0	0	NA	8.58E-09	2	1	1	1	NA	NA	NA	unphased	0.611888112	0.611888112	1	0.01125	0.98875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214080367	15	33838151	T	C	RYR3	CCDS45210.1	r.?	-	-	intronic	33	0	0	53	8	15.09433962	0	0	NA	0	0	NA	2.83E-10	2	1	1	1	NA	NA	NA	unphased	0.686106346	0.686106346	1	0.0075	0.9925	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214080684	15	40146016	G	C	GPR176	CCDS10051.1	r.?	-	-	intronic	34	0	0	63	8	12.6984127	0	0	NA	0	0	NA	1.18E-09	2	1	1	1	NA	NA	NA	unphased	0.577200577	0.577200577	1	0.02	0.98	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214080777	15	41670188	A	C	NUSAP1	CCDS45234.1	r.?	-	-	intronic	14	0	0	38	4	10.52631579	0	0	NA	0	0	NA	4.03E-05	2	1	1	1	NA	NA	NA	unphased	0.4784689	0.4784689	1	0.0425	0.9575	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214080844	15	42905842	T	C	STARD9	ENST00000290607	r.?	-	-	intronic	26	0	0	46	7	15.2173913	0	0	NA	0	0	NA	3.53E-09	2	1	1	1	NA	NA	NA	unphased	0.691699605	0.691699605	1	0.00875	0.99125	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214081012	15	46751103	A	C	-	-	-	-	-	-	27	0	0	50	10	20	0	0	NA	0	0	NA	8.36E-14	2	1	1	1	NA	NA	NA	unphased	0.909090909	0.909090909	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214081100	15	47584609	G	C	-	-	-	-	-	-	40	0	0	59	11	18.6440678	0	0	NA	0	0	NA	1.10E-14	2	1	1	1	NA	NA	NA	unphased	0.847457627	0.847457627	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214081306	15	52105762	T	C	TMOD2	CCDS10144.1	r.6352u>c	c.?	p.?	3'UTR variant	27	0	0	58	10	17.24137931	0	0	NA	0	0	NA	4.10E-13	2	1	1	1	NA	NA	NA	unphased	0.78369906	0.78369906	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214081811	15	62466180	T	C	-	-	-	-	-	-	29	0	0	51	11	21.56862745	0	0	NA	0	0	NA	1.94E-15	2	1	1	1	NA	NA	NA	unphased	0.980392157	0.980392157	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214082156	15	68563832	A	C	-	-	-	-	-	-	27	0	0	59	7	11.86440678	0	0	NA	0	0	NA	2.12E-08	2	1	1	1	NA	NA	NA	unphased	0.539291217	0.539291217	1	0.0425	0.9575	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214082578	15	76756065	A	C	SCAPER	ENST00000303521	r.?	-	-	intronic	37	0	0	51	13	25.49019608	0	0	NA	0	0	NA	4.87E-19	2	1	1	1	NA	NA	NA	unphased	1.158645276	1.158645276	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214083376	15	92921565	G	C	-	-	-	-	-	-	26	0	0	40	10	25	0	0	NA	0	0	NA	7.22E-15	2	1	1	1	NA	NA	NA	unphased	1.136363636	1.136363636	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214083403	15	93689603	G	C	-	-	-	-	-	-	19	0	0	52	10	19.23076923	0	0	NA	0	0	NA	1.28E-13	2	1	1	1	NA	NA	NA	unphased	0.874125874	0.874125874	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214083497	15	95747897	A	C	-	-	-	-	-	-	31	0	0	51	7	13.7254902	0	0	NA	0	0	NA	7.46E-09	2	1	1	1	NA	NA	NA	unphased	0.623885918	0.623885918	1	0.01625	0.98375	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214083601	15	97832780	A	C	-	-	-	-	-	-	37	0	0	62	11	17.74193548	0	0	NA	0	0	NA	1.96E-14	2	1	1	1	NA	NA	NA	unphased	0.806451613	0.806451613	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214083610	15	97995436	T	C	-	-	-	-	-	-	25	0	0	60	11	18.33333333	0	0	NA	0	0	NA	1.34E-14	2	1	1	1	NA	NA	NA	unphased	0.833333333	0.833333333	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214083621	15	98163107	G	C	-	-	-	-	-	-	30	0	0	61	11	18.03278689	0	0	NA	0	0	NA	1.62E-14	2	1	1	1	NA	NA	NA	unphased	0.819672131	0.819672131	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214083750	15	100458975	T	C	-	-	-	-	-	-	20	0	0	58	22	37.93103448	0	0	NA	2	0	0	1.13E-35	3.107689431	2	1	0.892310569	2	2	0.107689431	unphased	2.144295991	1.072147996	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214084262	16	5295915	A	C	-	-	-	-	-	-	18	0	0	57	4	7.01754386	0	0	NA	0	0	NA	0.000199821	3.500213656	2	1	0.499786344	2	2	0.500213656	unphased	0.424257418	0.848152409	0.500213656	0.00375	0.99625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214084442	16	7083649	A	C	-	-	-	-	-	-	26	0	0	62	15	24.19354839	0	0	NA	0	0	NA	2.28E-21	3.500213656	2	1	0.499786344	2	2	0.500213656	unphased	1.462661662	1.462661662	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214084840	16	11772828	A	C	SNN	CCDS10549.1	r.3125a>c	c.?	p.?	3'UTR variant	13	0	0	66	8	12.12121212	0	0	NA	0	0	NA	1.73E-09	3.500213656	2	1	0.499786344	2	2	0.500213656	unphased	0.732808267	0.732808267	1	0.005	0.995	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214085333	16	17544053	G	C	XYLT1	CCDS10569.1	r.?	-	-	intronic	32	0	0	76	8	10.52631579	0	0	NA	0	0	NA	5.44E-09	3.500213656	2	1	0.499786344	2	2	0.500213656	unphased	0.636386126	1.272228614	0.500213656	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214085369	16	17841740	G	C	-	-	-	-	-	-	18	0	0	65	14	21.53846154	0	0	NA	0	0	NA	2.93E-19	3.500213656	2	1	0.499786344	2	2	0.500213656	unphased	1.30214392	1.30214392	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214085581	16	20337909	G	C	GP2	CCDS42128.1	r.?	-	-	intronic	33	0	0	68	6	8.823529412	0	0	NA	0	0	NA	1.31E-06	1	1	0	1	NA	NA	NA	unphased	0.312834225	0.312834225	1	0.925	0.075	0	1	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214085657	16	21557892	T	C	ENSG00000217794	ENST00000403120	r.?	-	-	intronic	7	0	0	103	35	33.98058252	0	0	NA	0	0	NA	8.07E-54	1	1	0	1	NA	NA	NA	unphased	1.204766108	1.204766108	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214085855	16	24078960	T	C	PRKCB	CCDS10619.1	r.?	-	-	intronic	39	0	0	54	10	18.51851852	0	0	NA	0	0	NA	1.91E-13	1	1	0	1	NA	NA	NA	unphased	0.656565657	0.656565657	1	0.00875	0.99125	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214089812	16	35107349	G	C	-	-	-	-	-	-	32	0	0	53	6	11.32075472	0	0	NA	0	0	NA	2.93E-07	1.755790266	1	0	0.244209734	2	0	0.755790266	unphased	0.486933375	0.644270503	0.755790266	0.0125	0.9875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214091026	16	55389418	G	C	-	-	-	-	-	-	35	0	0	68	5	7.352941176	0	0	NA	0	0	NA	2.51E-05	3.175765079	2	1	0.824234921	2	2	0.175765079	unphased	0.420677914	0.420677914	1	0.11375	0.88625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214091487	16	61793665	G	C	CDH8	CCDS10802.1	r.?	-	-	intronic	28	0	0	60	10	16.66666667	0	0	NA	0	0	NA	5.86E-13	3.175765079	2	1	0.824234921	2	2	0.175765079	unphased	0.953536604	0.953536604	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214091601	16	63516155	A	C	-	-	-	-	-	-	35	0	0	76	25	32.89473684	0	0	NA	0	0	NA	1.83E-38	3.175765079	2	1	0.824234921	2	2	0.175765079	unphased	1.88198014	1.031654486	1.824234921	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214091625	16	64042646	T	C	-	-	-	-	-	-	35	0	0	53	7	13.20754717	0	0	NA	0	0	NA	9.85E-09	3.175765079	2	1	0.824234921	2	2	0.175765079	unphased	0.755632781	0.755632781	1	0.005	0.995	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214091641	16	64399946	T	C	-	-	-	-	-	-	26	0	0	71	22	30.98591549	0	0	NA	0	0	NA	2.34E-33	3.175765079	2	1	0.824234921	2	2	0.175765079	unphased	1.772772278	0.971789465	1.824234921	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214091895	16	68627680	T	C	-	-	-	-	-	-	14	0	0	55	20	36.36363636	0	0	NA	0	0	NA	4.08E-32	3.175765079	2	1	0.824234921	2	2	0.175765079	unphased	2.0804435	1.04022175	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214092600	16	76850649	G	C	-	-	-	-	-	-	43	0	0	66	20	30.3030303	0	0	NA	0	0	NA	3.11E-30	3.175765079	2	1	0.824234921	2	2	0.175765079	unphased	1.733702917	0.950372617	1.824234921	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214092648	16	77486664	T	C	-	-	-	-	-	-	29	0	0	65	13	20	0	0	NA	0	0	NA	1.57E-17	3.175765079	2	1	0.824234921	2	2	0.175765079	unphased	1.144243925	1.144243925	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214092770	16	79080541	G	C	WWOX	CCDS42196.1	r.?	-	-	intronic	34	0	0	69	20	28.98550725	0	0	NA	0	0	NA	8.73E-30	3.175765079	2	1	0.824234921	2	2	0.175765079	unphased	1.658324529	0.909052069	1.824234921	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214092862	16	80485382	A	C	-	-	-	-	-	-	33	0	0	67	9	13.43283582	0	0	NA	0	0	NA	6.43E-11	3.175765079	2	1	0.824234921	2	2	0.175765079	unphased	0.768522039	0.768522039	1	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214093492	16	89075403	T	C	-	-	-	-	-	-	21	0	0	185	26	14.05405405	0	0	NA	0	0	NA	2.40E-29	3.175765079	2	1	0.824234921	2	2	0.175765079	unphased	0.804063299	0.804063299	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214094106	17	1819987	T	C	-	-	-	-	-	-	16	0	0	85	37	43.52941176	0	0	NA	0	0	NA	9.49E-62	7	4	3	1	NA	NA	NA	unphased	4.155080214	1.038770053	4	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214094346	17	3426119	A	C	TRPV3	CCDS11029.1	r.?	-	-	intronic	14	0	0	77	5	6.493506494	0	0	NA	0	0	NA	4.58E-05	7	4	3	1	NA	NA	NA	unphased	0.619834711	0.619834711	1	0.01	0.99	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214094935	17	9576630	T	C	USP43	CCDS45610.1	r.?	-	-	intronic	25	0	0	67	8	11.94029851	0	0	NA	0	0	NA	1.96E-09	3	2	1	1	NA	NA	NA	unphased	0.662143826	0.662143826	1	0.00625	0.99375	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214095085	17	11558822	A	C	DNAH9	CCDS11160.1	r.?	-	-	intronic	27	0	0	58	30	51.72413793	0	0	NA	0	0	NA	2.36E-53	3	2	1	1	NA	NA	NA	unphased	2.868338558	1.434169279	2	0	0.98625	0.01375	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214095657	17	18312874	A	C	ENSG00000220161	ENST00000407600	r.?	-	-	upstream	35	0	0	69	7	10.14492754	241	1	0.414937759	246	23	9.349593496	6.43E-08	3	2	1	1	NA	NA	NA	unphased	0.562582345	0.562582345	1	0.03	0.97	0	2	1	5.37E-22	0.701212476	YES	1_1	somatic	custom.pulldown.HiSeq
1352322	PD9768b	1214095960	17	20919428	T	C	USP22	CCDS42285.1	r.?	-	-	intronic	26	0	0	73	27	36.98630137	0	0	NA	0	0	NA	4.45E-43	3	2	1	1	NA	NA	NA	unphased	2.051058531	1.025529265	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214097558	17	26217838	G	C	C17orf108	CCDS45631.1	r.?	-	-	intronic	32	0	0	61	9	14.75409836	0	0	NA	0	0	NA	2.68E-11	3	2	1	1	NA	NA	NA	unphased	0.818181818	0.818181818	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214098498	17	40863664	A	C	EZH1	CCDS32659.1	r.?	-	-	intronic	9	0	0	42	3	7.142857143	0	0	NA	0	0	NA	0.001240292	2.076017236	2	0	0.923982764	2	1	0.076017236	unphased	0.330105127	0.330105127	1	0.14875	0.85125	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214099258	17	49551463	A	C	-	-	-	-	-	-	42	0	0	45	22	48.88888889	0	0	NA	0	0	NA	8.79E-39	2.076017236	2	0	0.923982764	2	1	0.076017236	unphased	2.259386204	1.129693102	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214100098	17	64005489	T	C	CCDC46	CCDS32710.1	r.?	-	-	intronic	26	0	0	51	18	35.29411765	0	0	NA	0	0	NA	9.10E-29	2.076017236	2	0	0.923982764	2	1	0.076017236	unphased	1.631107688	0.847776663	1.923982764	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214100436	17	68727252	T	C	-	-	-	-	-	-	26	0	0	51	19	37.25490196	0	0	NA	0	0	NA	7.94E-31	2.076017236	2	0	0.923982764	2	1	0.076017236	unphased	1.721724782	0.894875367	1.923982764	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214100806	17	74953742	G	C	-	-	-	-	-	-	6	0	0	63	11	17.46031746	0	0	NA	0	0	NA	2.37E-14	2.076017236	2	0	0.923982764	2	1	0.076017236	unphased	0.806923644	0.806923644	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214101438	18	3337446	G	C	-	-	-	-	-	-	35	0	0	56	17	30.35714286	0	0	NA	0	0	NA	6.22E-26	2	2	0	1	NA	NA	NA	unphased	1.37987013	1.37987013	1	0	0.99625	0.00375	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214101996	18	12655485	T	C	SPIRE1	CCDS45829.1	r.?	-	-	intronic	37	0	0	57	28	49.12280702	0	0	NA	0	0	NA	4.87E-49	5	4	1	1	NA	NA	NA	unphased	3.706539075	0.926634769	4	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214102523	18	15173020	G	C	-	-	-	-	-	-	41	0	0	60	6	10	89	0	0	43	8	18.60465116	6.21E-07	5	4	1	1	NA	NA	NA	unphased	0.754545455	0.754545455	1	0.0025	0.9975	0	2	1	4.85E-11	1	YES	1_1	somatic	custom.pulldown.HiSeq
1352322	PD9768b	1214103666	18	21231846	G	C	ANKRD29	CCDS11879.1	r.?	-	-	intronic	26	0	0	133	13	9.77443609	0	0	NA	0	0	NA	2.50E-13	5	4	1	1	NA	NA	NA	unphased	0.737525632	0.737525632	1	0.00375	0.99625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214103698	18	21368311	A	C	LAMA3	CCDS42419.1	r.?	-	-	intronic	23	0	0	102	27	26.47058824	0	0	NA	0	0	NA	1.85E-38	5	4	1	1	NA	NA	NA	unphased	1.997326203	0.998663102	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214103849	18	22206156	G	C	AC022884.1	ENST00000500155	r.?	-	-	upstream	32	0	0	130	12	9.230769231	0	0	NA	0	0	NA	4.08E-12	5	4	1	1	NA	NA	NA	unphased	0.696503497	0.696503497	1	0.00375	0.99625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214104301	18	24697822	T	C	CHST9	CCDS42422.1	r.?	-	-	intronic	38	0	0	118	27	22.88135593	0	0	NA	0	0	NA	1.53E-36	5	4	1	1	NA	NA	NA	unphased	1.726502311	0.863251156	2	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214104416	18	25802601	T	C	-	-	-	-	-	-	31	0	0	98	9	9.183673469	0	0	NA	0	0	NA	2.06E-09	5	4	1	1	NA	NA	NA	unphased	0.692949907	0.692949907	1	0.01125	0.98875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214104456	18	26088026	A	C	-	-	-	-	-	-	39	0	0	98	16	16.32653061	0	0	NA	0	0	NA	9.83E-20	5	4	1	1	NA	NA	NA	unphased	1.231910946	1.231910946	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214104467	18	26148888	T	C	-	-	-	-	-	-	39	0	0	126	10	7.936507937	0	0	NA	0	0	NA	1.11E-09	5	4	1	1	NA	NA	NA	unphased	0.598845599	0.598845599	1	0.0275	0.9725	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214104538	18	26572825	G	C	-	-	-	-	-	-	23	0	0	119	8	6.722689076	0	0	NA	0	0	NA	1.87E-07	5	4	1	1	NA	NA	NA	unphased	0.507257448	0.507257448	1	0.07125	0.92875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214104648	18	27213702	G	C	-	-	-	-	-	-	33	0	0	109	11	10.09174312	0	0	NA	0	0	NA	1.20E-11	5	4	1	1	NA	NA	NA	unphased	0.76146789	0.76146789	1	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214105213	18	30663897	G	C	C18orf34	CCDS42424.1	r.?	-	-	intronic	32	0	0	109	22	20.18348624	0	0	NA	0	0	NA	9.58E-29	5	4	1	1	NA	NA	NA	unphased	1.52293578	0.76146789	2	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214105369	18	32181104	T	C	DTNA	CCDS45848.1	r.?	-	-	intronic	40	0	0	115	12	10.43478261	0	0	NA	1	1	100	9.35E-13	5	4	1	1	NA	NA	NA	unphased	0.787351779	0.787351779	1	0.00125	0.99875	0	2	1	0.005	1	NA	NA	NA	NA
1352322	PD9768b	1214105370	18	32185953	G	C	DTNA	CCDS45848.1	r.?	-	-	intronic	20	0	0	116	13	11.20689655	0	0	NA	0	0	NA	4.16E-14	5	4	1	1	NA	NA	NA	unphased	0.845611285	0.845611285	1	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214105761	18	35099919	G	C	CELF4	CCDS32818.1	r.?	-	-	intronic	10	0	0	117	17	14.52991453	0	0	NA	0	0	NA	5.69E-20	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	1.140782738	1.140782738	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214106179	18	38445837	G	C	-	-	-	-	-	-	20	0	0	93	12	12.90322581	0	0	NA	0	0	NA	6.99E-14	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	1.013067024	1.013067024	1	0.00125	0.9975	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214106228	18	38840180	G	C	-	-	-	-	-	-	22	0	0	80	15	18.75	0	0	NA	0	0	NA	1.49E-19	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	1.472113019	1.472113019	1	0	0.995	0.005	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214107728	18	49704991	A	C	-	-	-	-	-	-	22	0	0	107	18	16.82242991	0	0	NA	0	0	NA	2.90E-22	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	1.320774298	1.320774298	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214107780	18	49882259	G	C	DCC	CCDS11952.1	r.?	-	-	intronic	36	0	0	113	7	6.194690265	0	0	NA	0	0	NA	1.90E-06	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	0.486361823	0.486361823	1	0.075	0.925	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214107930	18	50855089	G	C	DCC	CCDS11952.1	r.?	-	-	intronic	25	0	0	90	7	7.777777778	0	0	NA	0	0	NA	4.06E-07	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	0.610654289	0.610654289	1	0.02	0.97875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214107974	18	51031396	T	C	DCC	CCDS11952.1	r.?	-	-	intronic	34	0	0	118	12	10.16949153	0	0	NA	0	0	NA	1.28E-12	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	0.79843418	0.79843418	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214108094	18	51844076	T	C	-	-	-	-	-	-	27	0	0	87	12	13.79310345	0	0	NA	0	0	NA	3.06E-14	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	1.082933715	1.082933715	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214108163	18	52380410	T	C	-	-	-	-	-	-	29	0	0	98	15	15.30612245	0	0	NA	0	0	NA	3.78E-18	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	1.201724914	1.201724914	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214108442	18	54588829	G	C	WDR7	CCDS11962.1	r.?	-	-	intronic	32	0	0	101	7	6.930693069	0	0	NA	0	0	NA	8.91E-07	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	0.544147387	0.544147387	1	0.035	0.965	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214108444	18	54593647	A	C	WDR7	CCDS11962.1	r.?	-	-	intronic	31	0	0	108	18	16.66666667	0	0	NA	0	0	NA	3.47E-22	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	1.308544906	1.308544906	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214108454	18	54685876	T	C	WDR7	CCDS11962.1	r.?	-	-	intronic	35	0	0	96	56	58.33333333	0	0	NA	0	0	NA	1.95E-102	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	4.579907171	1.144976793	4	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214108956	18	58102253	T	C	-	-	-	-	-	-	20	0	0	89	6	6.741573034	0	0	NA	2	0	0	6.37E-06	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	0.529299063	0.529299063	1	0.0325	0.9675	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214109133	18	59476222	G	C	RNF152	CCDS11978.1	r.8575c>g	c.?	p.?	3'UTR variant	33	0	0	94	11	11.70212766	0	0	NA	0	0	NA	2.30E-12	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	0.918765572	0.918765572	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214109334	18	60617897	A	C	PHLPP1	CCDS45881.1	r.?	-	-	intronic	19	0	0	123	15	12.19512195	0	0	NA	0	0	NA	1.29E-16	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	0.957471882	0.957471882	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214109546	18	62197401	G	C	-	-	-	-	-	-	34	0	0	95	16	16.84210526	0	0	NA	0	0	NA	5.80E-20	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	1.322319063	1.322319063	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214109661	18	63041775	A	C	-	-	-	-	-	-	35	0	0	101	18	17.82178218	0	0	NA	0	0	NA	9.60E-23	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	1.399236137	1.399236137	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214109947	18	65065312	T	C	-	-	-	-	-	-	35	0	0	84	44	52.38095238	0	0	NA	0	0	NA	7.14E-78	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	4.112569704	1.028142426	4	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214109987	18	65288203	G	C	AC114689.1	ENST00000500778	r.?	-	-	intronic	34	0	0	98	13	13.26530612	0	0	NA	0	0	NA	4.42E-15	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	1.041494925	1.041494925	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214110033	18	65595270	T	C	-	-	-	-	-	-	25	0	0	86	42	48.8372093	0	0	NA	0	0	NA	1.19E-72	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	3.834340887	1.037939565	3.69418511	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214110039	18	65630688	T	C	-	-	-	-	-	-	40	0	0	106	8	7.547169811	164	0	0	291	12	4.12371134	7.62E-08	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	0.592548637	0.592548637	1	0.02	0.98	0	2	1	4.13E-08	1	YES	1_1	somatic	custom.pulldown.HiSeq
1352322	PD9768b	1214110120	18	66128193	T	C	-	-	-	-	-	-	38	0	0	107	13	12.14953271	0	0	NA	0	0	NA	1.43E-14	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	0.953892548	0.953892548	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214110260	18	66995099	T	C	-	-	-	-	-	-	13	0	0	77	8	10.38961039	0	0	NA	0	0	NA	6.05E-09	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	0.815716305	0.815716305	1	0.00375	0.99625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214110266	18	67038579	T	C	-	-	-	-	-	-	36	0	0	86	13	15.11627907	0	0	NA	0	0	NA	7.57E-16	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	1.186819798	1.186819798	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214110296	18	67230511	A	C	DOK6	CCDS32841.1	r.?	-	-	intronic	30	0	0	100	13	13	0	0	NA	0	0	NA	5.79E-15	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	1.020665027	1.020665027	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214110654	18	69618912	T	C	-	-	-	-	-	-	27	1	3.703703704	88	38	43.18181818	0	0	NA	0	0	NA	3.32E-63	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	3.390320893	0.917745265	3.69418511	0	1	0	2	0.126579904	1	1	NA	NA	NA	NA
1352322	PD9768b	1214111171	18	73340905	G	C	-	-	-	-	-	-	31	0	0	97	9	9.278350515	0	0	NA	0	0	NA	1.88E-09	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	0.728468298	0.728468298	1	0.005	0.995	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214111184	18	73424640	G	C	AC090338.1	ENST00000515252	r.?	-	-	upstream	14	0	0	80	9	11.25	0	0	NA	0	0	NA	3.29E-10	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	0.883267811	0.883267811	1	0.00375	0.99625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214111464	18	75050445	G	C	-	-	-	-	-	-	15	0	0	111	9	8.108108108	0	0	NA	0	0	NA	6.24E-09	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	0.636589414	0.636589414	1	0.01125	0.98875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214111502	18	75222924	T	C	-	-	-	-	-	-	10	1	10	80	7	8.75	0	0	NA	0	0	NA	1.80E-07	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	0.686986076	0.686986076	1	0.0075	0.9925	0	2	0.04888987	1	1	NA	NA	NA	NA
1352322	PD9768b	1214111616	18	76082471	T	C	-	-	-	-	-	-	36	0	0	108	16	14.81481481	0	0	NA	0	0	NA	5.03E-19	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	1.163151027	1.163151027	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214112007	18	77403819	G	C	ENSG00000178412	ENST00000317008	r.?	-	-	intronic	13	0	0	113	14	12.38938053	0	0	NA	0	0	NA	1.05E-15	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	0.972723647	0.972723647	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214112709	19	8918501	T	C	ZNF558	CCDS12208.1	r.?	-	-	downstream	36	0	0	69	26	37.68115942	0	0	NA	0	0	NA	8.50E-42	6	3	3	1	NA	NA	NA	unphased	3.22002635	1.073342117	3	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214112741	19	9099715	G	C	-	-	-	-	-	-	11	0	0	80	9	11.25	0	0	NA	0	0	NA	3.29E-10	6	3	3	1	NA	NA	NA	unphased	0.961363636	0.961363636	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214113116	19	12125609	G	C	ZNF433	CCDS45983.1	r.2244c>g	c.?	p.?	3'UTR variant	32	0	0	71	10	14.08450704	1	0	0	1	0	0	3.42E-12	6	3	3	1	NA	NA	NA	unphased	1.203585147	1.203585147	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214113376	19	14334633	G	C	-	-	-	-	-	-	10	0	0	74	7	9.459459459	0	0	NA	0	0	NA	1.05E-07	6	3	3	1	NA	NA	NA	unphased	0.808353808	0.808353808	1	0.00125	0.9975	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214113556	19	15664889	G	C	CYP4F22	CCDS12331.1	r.?	-	-	downstream	8	0	0	56	9	16.07142857	0	0	NA	0	0	NA	1.20E-11	6	3	3	1	NA	NA	NA	unphased	1.373376623	1.373376623	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214114107	19	19763948	G	C	ATP13A1	CCDS32970.2	r.?	-	-	intronic	6	0	0	70	7	10	0	0	NA	0	0	NA	7.11E-08	4.455748631	2	2	0.544251369	3	2	0.455748631	unphased	0.700120318	0.700120318	1	0.01125	0.98875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214114150	19	20101053	G	C	ZNF90	ENST00000427401	r.?	-	-	intronic	37	0	0	97	14	14.43298969	0	0	NA	0	0	NA	1.16E-16	4.455748631	2	2	0.544251369	3	2	0.455748631	unphased	1.010482933	1.010482933	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214114277	19	21028578	T	C	-	-	-	-	-	-	31	0	0	82	11	13.41463415	0	0	NA	0	0	NA	4.94E-13	4.455748631	2	2	0.544251369	3	2	0.455748631	unphased	0.939185792	0.939185792	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214114636	19	23063716	T	C	-	-	-	-	-	-	37	0	0	93	26	27.95698925	0	0	NA	0	0	NA	8.48E-38	4.455748631	2	2	0.544251369	3	2	0.455748631	unphased	1.957325619	0.97866281	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214115520	19	28860724	A	C	-	-	-	-	-	-	31	0	0	74	12	16.21621622	0	0	NA	0	0	NA	4.02E-15	5	3	2	1	NA	NA	NA	unphased	1.223587224	1.223587224	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214115792	19	31345006	G	C	-	-	-	-	-	-	33	0	0	82	5	6.097560976	0	0	NA	0	0	NA	6.19E-05	5	3	2	1	NA	NA	NA	unphased	0.460088692	0.460088692	1	0.0525	0.9475	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214117115	19	43615374	T	C	PSG1	ENST00000449000	r.?	-	-	intronic	37	0	0	70	17	24.28571429	0	0	NA	0	0	NA	4.68E-24	3	3	0	1	NA	NA	NA	unphased	1.346753247	1.346753247	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214118162	19	48905271	T	C	GRIN2D	CCDS12719.1	r.?	-	-	intronic	27	0	0	74	13	17.56756757	0	0	NA	0	0	NA	9.62E-17	4.315616007	4	0	0.684383993	4	1	0.315616007	unphased	1.205323205	1.205323205	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214118292	19	49995803	G	C	SNORD32A	CCDS12768.1	r.?	-	-	downstream	30	0	0	58	7	12.06896552	0	0	NA	0	0	NA	1.88E-08	3.161750156	3	0	0.838249844	3	1	0.161750156	unphased	0.688800567	0.688800567	1	0.005	0.995	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214119790	2	1721065	G	C	PXDN	CCDS46221.1	r.?	-	-	intronic	26	0	0	60	20	33.33333333	0	0	NA	0	0	NA	3.30E-31	4	2	2	1	NA	NA	NA	unphased	2.181818182	1.090909091	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214120927	2	13801663	T	C	-	-	-	-	-	-	37	0	0	74	20	27.02702703	0	0	NA	0	0	NA	4.34E-29	4	2	2	1	NA	NA	NA	unphased	1.769041769	0.884520885	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214121056	2	15578080	T	C	NBAS	CCDS1685.1	r.?	-	-	intronic	35	0	0	61	20	32.78688525	0	0	NA	0	0	NA	4.89E-31	4	2	2	1	NA	NA	NA	unphased	2.146050671	1.073025335	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214121475	2	21460392	G	C	-	-	-	-	-	-	26	0	0	71	5	7.042253521	0	0	NA	0	0	NA	3.09E-05	4	2	2	1	NA	NA	NA	unphased	0.460947503	0.460947503	1	0.05625	0.94375	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214121758	2	24989352	A	C	NCOA1	CCDS1713.1	r.?	-	-	intronic	30	0	0	67	4	5.970149254	0	0	NA	0	0	NA	0.000372648	4	2	2	1	NA	NA	NA	unphased	0.390773406	0.390773406	1	0.11875	0.88125	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214122275	2	29845331	T	C	ALK	CCDS33172.1	r.?	-	-	intronic	34	0	0	59	18	30.50847458	0	0	NA	0	0	NA	2.03E-27	3	2	1	1	NA	NA	NA	unphased	1.69183359	0.845916795	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214122643	2	34971770	T	C	-	-	-	-	-	-	41	0	0	75	26	34.66666667	0	0	NA	0	0	NA	1.19E-40	3	2	1	1	NA	NA	NA	unphased	1.922424242	0.961212121	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214122660	2	35456046	T	C	-	-	-	-	-	-	35	0	0	66	26	39.39393939	0	0	NA	0	0	NA	2.03E-42	3	2	1	1	NA	NA	NA	unphased	2.184573003	1.092286501	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214122968	2	38665060	G	C	-	-	-	-	-	-	23	0	0	65	7	10.76923077	2	0	0	0	0	NA	4.22E-08	3	2	1	1	NA	NA	NA	unphased	0.597202797	0.597202797	1	0.02	0.98	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214123035	2	39210055	T	C	SOS1	CCDS1802.1	r.6999a>g	c.?	p.?	3'UTR variant	29	0	0	94	29	30.85106383	0	0	NA	0	0	NA	2.03E-43	3	2	1	1	NA	NA	NA	unphased	1.710831721	0.855415861	2	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214123210	2	41994197	A	C	-	-	-	-	-	-	26	0	0	77	26	33.76623377	0	0	NA	0	0	NA	2.70E-40	3	2	1	1	NA	NA	NA	unphased	1.872491145	0.936245573	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214123227	2	42231187	T	C	-	-	-	-	-	-	27	0	0	52	7	13.46153846	0	0	NA	0	0	NA	8.58E-09	3	2	1	1	NA	NA	NA	unphased	0.746503497	0.746503497	1	0.01125	0.98875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214123262	2	42783892	G	C	MTA3	ENST00000405592	r.?	-	-	intronic	23	0	0	57	25	43.85964912	0	0	NA	0	0	NA	2.54E-42	3	2	1	1	NA	NA	NA	unphased	2.432216906	1.216108453	2	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214123374	2	44237097	G	C	-	-	-	-	-	-	31	0	0	53	5	9.433962264	0	0	NA	0	0	NA	7.34E-06	3	2	1	1	NA	NA	NA	unphased	0.523156089	0.523156089	1	0.02625	0.97375	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214123822	2	52314543	T	C	-	-	-	-	-	-	29	0	0	58	5	8.620689655	0	0	NA	0	0	NA	1.15E-05	3	2	1	1	NA	NA	NA	unphased	0.478056426	0.478056426	1	0.05625	0.94375	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214124378	2	61327963	T	C	KIAA1841	CCDS46296.1	r.?	-	-	intronic	41	0	0	71	9	12.67605634	0	0	NA	0	0	NA	1.10E-10	3	2	1	1	NA	NA	NA	unphased	0.702944942	0.702944942	1	0.00375	0.99625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214124435	2	62000679	T	C	-	-	-	-	-	-	19	0	0	57	9	15.78947368	0	0	NA	0	0	NA	1.42E-11	3	2	1	1	NA	NA	NA	unphased	0.875598086	0.875598086	1	0.005	0.995	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214124604	2	64934625	A	C	-	-	-	-	-	-	27	0	0	84	34	40.47619048	0	0	NA	0	0	NA	1.68E-55	3	2	1	1	NA	NA	NA	unphased	2.244588745	1.122294372	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214124776	2	67578718	G	C	-	-	-	-	-	-	22	0	0	47	13	27.65957447	0	0	NA	0	0	NA	1.47E-19	3	2	1	1	NA	NA	NA	unphased	1.53384913	1.53384913	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214125225	2	74786197	T	C	DOK1	CCDS1954.1	r.?	-	-	downstream	17	0	0	54	11	20.37037037	0	0	NA	0	0	NA	3.84E-15	3	2	1	1	NA	NA	NA	unphased	1.12962963	1.12962963	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214125572	2	80947345	T	C	-	-	-	-	-	-	9	0	0	47	6	12.76595745	0	0	NA	0	0	NA	1.41E-07	3	2	1	1	NA	NA	NA	unphased	0.707930368	0.707930368	1	0.00875	0.99125	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214126911	2	91645461	T	C	-	-	-	-	-	-	50	0	0	93	6	6.451612903	0	0	NA	0	0	NA	8.21E-06	3	2	1	1	NA	NA	NA	unphased	0.357771261	0.357771261	1	0.555	0.445	0	1	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214128995	2	98579793	T	C	TMEM131	CCDS46368.1	r.?	-	-	intronic	27	0	0	69	33	47.82608696	0	0	NA	0	0	NA	5.18E-57	3	2	1	1	NA	NA	NA	unphased	2.652173913	1.326086957	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214129189	2	101886154	T	C	C2orf29	CCDS2050.1	r.1975u>c	c.?	p.?	3'UTR variant	38	0	0	66	24	36.36363636	0	0	NA	0	0	NA	3.04E-38	3	2	1	1	NA	NA	NA	unphased	2.016528926	1.008264463	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214129222	2	102279011	G	C	-	-	-	-	-	-	24	0	0	61	25	40.98360656	0	0	NA	0	0	NA	2.20E-41	3	2	1	1	NA	NA	NA	unphased	2.272727273	1.136363636	2	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214129334	2	104309858	A	C	-	-	-	-	-	-	37	0	0	51	18	35.29411765	0	0	NA	0	0	NA	9.10E-29	3	2	1	1	NA	NA	NA	unphased	1.957219251	0.978609626	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214129424	2	105773386	G	C	-	-	-	-	-	-	30	0	0	92	7	7.608695652	0	0	NA	0	0	NA	4.72E-07	3	2	1	1	NA	NA	NA	unphased	0.421936759	0.421936759	1	0.31	0.69	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214129808	2	111640643	T	C	ACOXL	CCDS42730.1	r.?	-	-	intronic	30	0	0	41	10	24.3902439	0	0	NA	0	0	NA	9.51E-15	3	2	1	1	NA	NA	NA	unphased	1.352549889	1.352549889	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214129932	2	112987351	T	C	ZC3H8	CCDS46392.1	r.?	-	-	intronic	25	0	0	59	21	35.59322034	0	0	NA	0	0	NA	2.06E-33	3	2	1	1	NA	NA	NA	unphased	1.973805855	0.986902928	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214130201	2	115863666	T	C	DPP10	CCDS46400.1	r.?	-	-	intronic	27	0	0	76	27	35.52631579	0	0	NA	0	0	NA	1.67E-42	3	2	1	1	NA	NA	NA	unphased	1.970095694	0.985047847	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214130217	2	116149860	G	C	DPP10	CCDS46400.1	r.?	-	-	intronic	36	0	0	55	17	30.90909091	0	0	NA	0	0	NA	4.35E-26	3	2	1	1	NA	NA	NA	unphased	1.714049587	0.857024793	2	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214130355	2	118220592	G	C	-	-	-	-	-	-	21	0	0	58	10	17.24137931	0	0	NA	0	0	NA	4.10E-13	3	2	1	1	NA	NA	NA	unphased	0.956112853	0.956112853	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214130373	2	118390664	T	C	-	-	-	-	-	-	42	0	0	70	17	24.28571429	0	0	NA	0	0	NA	4.68E-24	3	2	1	1	NA	NA	NA	unphased	1.346753247	1.346753247	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214130757	2	124115629	G	C	-	-	-	-	-	-	36	0	0	51	6	11.76470588	0	0	NA	0	0	NA	2.32E-07	3	2	1	1	NA	NA	NA	unphased	0.652406417	0.652406417	1	0.00625	0.9925	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214130763	2	124146887	T	C	-	-	-	-	-	-	30	0	0	76	30	39.47368421	0	0	NA	0	0	NA	9.63E-49	3	2	1	1	NA	NA	NA	unphased	2.188995215	1.094497608	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214130848	2	125287531	G	C	CNTNAP5	CCDS46401.1	r.?	-	-	intronic	26	0	0	59	8	13.55932203	0	0	NA	0	0	NA	6.90E-10	3	2	1	1	NA	NA	NA	unphased	0.75192604	0.75192604	1	0.00625	0.99375	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214130921	2	126201750	T	C	-	-	-	-	-	-	32	0	0	81	29	35.80246914	0	0	NA	0	0	NA	1.18E-45	3	2	1	1	NA	NA	NA	unphased	1.985409652	0.992704826	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214130945	2	126550288	T	C	-	-	-	-	-	-	32	0	0	80	26	32.5	0	0	NA	2	0	0	8.83E-40	3	2	1	1	NA	NA	NA	unphased	1.802272727	0.901136364	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214132769	2	136217041	T	C	ZRANB3	CCDS46419.1	r.?	-	-	intronic	36	0	0	57	9	15.78947368	0	0	NA	0	0	NA	1.42E-11	3	2	1	1	NA	NA	NA	unphased	0.875598086	0.875598086	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214132990	2	140191939	T	C	-	-	-	-	-	-	41	0	0	60	21	35	0	0	NA	0	0	NA	3.16E-33	3	2	1	1	NA	NA	NA	unphased	1.940909091	0.970454545	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214133086	2	141605969	A	C	LRP1B	CCDS2182.1	r.?	-	-	intronic	34	0	0	71	24	33.8028169	110	0	0	112	45	40.17857143	2.52E-37	3	2	1	1	NA	NA	NA	unphased	1.874519846	0.937259923	2	0	1	0	2	1	9.26E-73	1	YES	1_1	somatic	custom.pulldown.HiSeq
1352322	PD9768b	1214133154	2	142504253	A	C	LRP1B	CCDS2182.1	r.?	-	-	intronic	29	0	0	64	9	14.0625	0	0	NA	0	0	NA	4.20E-11	3	2	1	1	NA	NA	NA	unphased	0.779829545	0.779829545	1	0.0025	0.99625	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214133281	2	144734970	G	C	GTDC1	CCDS33300.1	r.?	-	-	intronic	29	0	0	66	11	16.66666667	0	0	NA	0	0	NA	4.07E-14	3	2	1	1	NA	NA	NA	unphased	0.924242424	0.924242424	1	0.00125	0.9975	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214133283	2	144787041	T	C	GTDC1	CCDS33300.1	r.?	-	-	intronic	26	0	0	60	10	16.66666667	0	0	NA	0	0	NA	5.86E-13	3	2	1	1	NA	NA	NA	unphased	0.924242424	0.924242424	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214133324	2	145647523	T	C	-	-	-	-	-	-	33	0	0	58	11	18.96551724	0	0	NA	0	0	NA	8.96E-15	3	2	1	1	NA	NA	NA	unphased	1.051724138	1.051724138	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214133361	2	146336682	G	C	-	-	-	-	-	-	10	0	0	61	8	13.1147541	0	0	NA	0	0	NA	9.09E-10	3	2	1	1	NA	NA	NA	unphased	0.727272727	0.727272727	1	0.005	0.995	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214133552	2	150145059	G	C	-	-	-	-	-	-	40	0	0	66	18	27.27272727	0	0	NA	0	0	NA	2.08E-26	3	2	1	1	NA	NA	NA	unphased	1.512396694	0.756198347	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214133799	2	153680050	T	C	-	-	-	-	-	-	33	0	0	67	19	28.35820896	0	0	NA	0	0	NA	3.67E-28	3	2	1	1	NA	NA	NA	unphased	1.572591588	0.786295794	2	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214133969	2	156418485	A	C	-	-	-	-	-	-	41	0	0	74	25	33.78378378	0	0	NA	0	0	NA	8.25E-39	3	2	1	1	NA	NA	NA	unphased	1.873464373	0.936732187	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214133990	2	156916373	T	C	-	-	-	-	-	-	34	0	0	54	16	29.62962963	1	0	0	0	0	NA	2.69E-24	3	2	1	1	NA	NA	NA	unphased	1.643097643	0.821548822	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214134037	2	157582076	T	C	-	-	-	-	-	-	20	0	0	51	11	21.56862745	0	0	NA	0	0	NA	1.94E-15	3	2	1	1	NA	NA	NA	unphased	1.196078431	1.196078431	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214134073	2	158608510	T	C	ACVR1	CCDS2206.1	r.?	-	-	intronic	27	0	0	52	6	11.53846154	0	0	NA	0	0	NA	2.61E-07	3	2	1	1	NA	NA	NA	unphased	0.63986014	0.63986014	1	0.0125	0.9875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214134462	2	164587110	A	C	FIGN	CCDS2221.2	r.?	-	-	intronic	24	0	0	72	10	13.88888889	0	0	NA	0	0	NA	3.95E-12	3	2	1	1	NA	NA	NA	unphased	0.77020202	0.77020202	1	0.00375	0.99625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214134511	2	165559088	T	C	COBLL1	CCDS2223.2	r.?	-	-	intronic	17	0	0	64	21	32.8125	0	0	NA	0	0	NA	1.60E-32	3	2	1	1	NA	NA	NA	unphased	1.819602273	0.909801136	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214134526	2	165834346	G	C	-	-	-	-	-	-	31	0	0	69	24	34.7826087	0	0	NA	0	0	NA	1.11E-37	4	2	2	1	NA	NA	NA	unphased	2.276679842	1.138339921	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214134652	2	167791601	T	C	XIRP2	CCDS42769.1	r.?	-	-	intronic	36	0	0	81	23	28.39506173	0	0	NA	0	0	NA	8.61E-34	4	2	2	1	NA	NA	NA	unphased	1.858585859	0.929292929	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214134709	2	168836803	G	C	STK39	CCDS42770.1	r.?	-	-	intronic	29	0	0	80	5	6.25	0	0	NA	0	0	NA	5.50E-05	4	2	2	1	NA	NA	NA	unphased	0.409090909	0.409090909	1	0.13	0.87	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214134724	2	169055267	T	C	STK39	CCDS42770.1	r.?	-	-	intronic	35	0	0	79	23	29.11392405	0	0	NA	0	0	NA	4.43E-34	4	2	2	1	NA	NA	NA	unphased	1.905638665	0.952819333	2	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214134746	2	169376922	G	C	LASS6	CCDS2228.1	r.?	-	-	intronic	27	0	0	71	20	28.16901408	0	0	NA	0	0	NA	1.68E-29	4	2	2	1	NA	NA	NA	unphased	1.843790013	0.921895006	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214135103	2	172893283	G	C	ENSG00000172878	CCDS2246.1	r.?	-	-	intronic	10	0	0	77	23	29.87012987	0	0	NA	0	0	NA	2.24E-34	4	2	2	1	NA	NA	NA	unphased	1.955135773	0.977567887	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214135508	2	178005845	T	C	-	-	-	-	-	-	29	0	0	93	6	6.451612903	0	0	NA	0	0	NA	8.21E-06	4	2	2	1	NA	NA	NA	unphased	0.42228739	0.42228739	1	0.16875	0.83125	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214136156	2	186693612	T	C	FSIP2	ENST00000424728	r.?	-	-	intronic	34	0	0	86	11	12.79069767	114	0	0	164	28	17.07317073	8.47E-13	4	2	2	1	NA	NA	NA	unphased	0.837209302	0.837209302	1	0.00125	0.99875	0	2	1	5.69E-34	1	YES	1_1	somatic	custom.pulldown.HiSeq
1352322	PD9768b	1214136193	2	187177184	A	C	-	-	-	-	-	-	32	0	0	95	7	7.368421053	0	0	NA	0	0	NA	5.88E-07	4	2	2	1	NA	NA	NA	unphased	0.482296651	0.482296651	1	0.08	0.92	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214136242	2	187677808	T	C	-	-	-	-	-	-	37	0	0	62	5	8.064516129	0	0	NA	0	0	NA	1.60E-05	4	2	2	1	NA	NA	NA	unphased	0.527859238	0.527859238	1	0.0275	0.97125	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214136353	2	189292797	G	C	GULP1	CCDS2295.1	r.?	-	-	intronic	32	0	0	76	11	14.47368421	0	0	NA	0	0	NA	2.08E-13	4	2	2	1	NA	NA	NA	unphased	0.947368421	0.947368421	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214136359	2	189402765	T	C	GULP1	CCDS2295.1	r.?	-	-	intronic	22	0	0	58	9	15.51724138	0	0	NA	0	0	NA	1.67E-11	4	2	2	1	NA	NA	NA	unphased	1.015673981	1.015673981	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214136661	2	193257160	A	C	-	-	-	-	-	-	26	0	0	74	19	25.67567568	0	0	NA	0	0	NA	3.14E-27	4	2	2	1	NA	NA	NA	unphased	1.680589681	0.84029484	2	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214136718	2	194288220	T	C	-	-	-	-	-	-	31	0	0	73	19	26.02739726	0	0	NA	0	0	NA	2.35E-27	4	2	2	1	NA	NA	NA	unphased	1.703611457	0.851805729	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214136755	2	194885878	T	C	-	-	-	-	-	-	35	0	0	85	16	18.82352941	0	0	NA	0	0	NA	8.67E-21	4	2	2	1	NA	NA	NA	unphased	1.232085561	1.232085561	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214137143	2	199167809	G	C	-	-	-	-	-	-	26	0	0	81	9	11.11111111	0	0	NA	0	0	NA	3.68E-10	4	2	2	1	NA	NA	NA	unphased	0.727272727	0.727272727	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214137273	2	200711381	T	C	-	-	-	-	-	-	39	0	0	78	11	14.1025641	0	0	NA	0	0	NA	2.79E-13	4	2	2	1	NA	NA	NA	unphased	0.923076923	0.923076923	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214137400	2	202391852	A	C	ALS2CR11	CCDS2349.1	r.?	-	-	intronic	38	0	0	71	9	12.67605634	0	0	NA	0	0	NA	1.10E-10	4	2	2	1	NA	NA	NA	unphased	0.829705506	0.829705506	1	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214138015	2	208894344	A	C	PLEKHM3	CCDS42808.1	r.?	-	-	upstream	40	0	0	80	6	7.5	0	0	NA	0	0	NA	3.42E-06	4	2	2	1	NA	NA	NA	unphased	0.490909091	0.490909091	1	0.05375	0.94625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214138365	2	213596221	G	C	-	-	-	-	-	-	35	0	0	90	5	5.555555556	0	0	NA	0	0	NA	9.65E-05	2	1	1	1	NA	NA	NA	unphased	0.252525253	0.252525253	1	0.96875	0.03125	0	1	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214138395	2	213910035	T	C	IKZF2	CCDS2395.1	r.?	-	-	intronic	31	0	0	63	21	33.33333333	0	0	NA	0	0	NA	1.08E-32	2	1	1	1	NA	NA	NA	unphased	1.515151515	1.515151515	1	0	0.99375	0.00625	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214138785	2	220757748	T	C	-	-	-	-	-	-	29	0	0	52	24	46.15384615	0	0	NA	0	0	NA	2.22E-41	2.085536502	2	0	0.914463498	2	1	0.085536502	unphased	2.137380484	1.068690242	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214138993	2	224991721	T	C	-	-	-	-	-	-	33	0	0	43	10	23.25581395	0	0	NA	0	0	NA	1.61E-14	2.085536502	2	0	0.914463498	2	1	0.085536502	unphased	1.076974662	1.076974662	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214140169	20	3109340	T	C	UBOX5	CCDS13046.1	r.?	-	-	intronic	23	0	0	76	7	9.210526316	0	0	NA	0	0	NA	1.26E-07	4	2	2	1	NA	NA	NA	unphased	0.602870813	0.602870813	1	0.02	0.98	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214141077	20	15257113	G	C	MACROD2	CCDS13120.2	r.?	-	-	intronic	16	0	0	52	14	26.92307692	0	0	NA	0	0	NA	9.04E-21	3.731603834	2	1	0.268396166	2	2	0.731603834	unphased	1.689977256	0.844988628	2	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214141217	20	17210030	G	C	PCSK2	CCDS13125.1	r.?	-	-	intronic	34	0	0	64	18	28.125	0	0	NA	0	0	NA	1.10E-26	3.731603834	2	1	0.268396166	2	2	0.731603834	unphased	1.765422669	0.882711335	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214141585	20	21936353	A	C	-	-	-	-	-	-	44	0	0	66	12	18.18181818	0	0	NA	0	0	NA	9.36E-16	3.731603834	2	1	0.268396166	2	2	0.731603834	unphased	1.141283342	1.141283342	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214142764	20	26167587	G	C	-	-	-	-	-	-	27	0	0	82	22	26.82926829	0	0	NA	0	0	NA	9.09E-32	4	2	2	1	NA	NA	NA	unphased	1.756097561	0.87804878	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214146076	20	38030031	G	C	-	-	-	-	-	-	30	0	0	97	20	20.6185567	0	0	NA	0	0	NA	1.80E-26	4	2	2	1	NA	NA	NA	unphased	1.349578257	1.349578257	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214146260	20	40994319	T	C	PTPRT	CCDS42874.1	r.?	-	-	intronic	35	0	0	65	7	10.76923077	0	0	NA	0	0	NA	4.22E-08	4	2	2	1	NA	NA	NA	unphased	0.704895105	0.704895105	1	0.00625	0.99375	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214146293	20	41641407	G	C	PTPRT	CCDS42874.1	r.?	-	-	intronic	25	0	0	72	18	25	0	0	NA	0	0	NA	1.22E-25	4	2	2	1	NA	NA	NA	unphased	1.636363636	0.818181818	2	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214146383	20	42477643	G	C	-	-	-	-	-	-	17	0	0	71	18	25.35211268	0	0	NA	0	0	NA	9.22E-26	4	2	2	1	NA	NA	NA	unphased	1.659411012	0.829705506	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214146404	20	42733603	G	C	-	-	-	-	-	-	32	0	0	65	7	10.76923077	0	0	NA	0	0	NA	4.22E-08	4	2	2	1	NA	NA	NA	unphased	0.704895105	0.704895105	1	0.0075	0.9925	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214146662	20	45628513	G	C	EYA2	CCDS13403.1	r.?	-	-	intronic	32	0	0	57	8	14.03508772	0	0	NA	0	0	NA	5.19E-10	4	2	2	1	NA	NA	NA	unphased	0.918660287	0.918660287	1	0.00125	0.9975	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214146675	20	45737650	G	C	EYA2	CCDS13403.1	r.?	-	-	intronic	20	0	0	85	17	20	0	0	NA	0	0	NA	1.77E-22	4	2	2	1	NA	NA	NA	unphased	1.309090909	1.309090909	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214147258	20	50555895	G	C	-	-	-	-	-	-	32	0	0	78	30	38.46153846	0	0	NA	0	0	NA	2.54E-48	4	2	2	1	NA	NA	NA	unphased	2.517482517	1.258741259	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214147607	20	53477612	G	C	-	-	-	-	-	-	28	0	0	65	24	36.92307692	0	0	NA	0	0	NA	1.94E-38	4	2	2	1	NA	NA	NA	unphased	2.416783217	1.208391608	2	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214147991	20	58523374	T	C	C20orf177	CCDS13484.1	r.4791u>c	c.?	p.?	3'UTR variant	28	0	0	71	26	36.61971831	0	0	NA	0	0	NA	2.11E-41	4	2	2	1	NA	NA	NA	unphased	2.396927017	1.198463508	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214148027	20	59011051	T	C	-	-	-	-	-	-	29	0	0	72	20	27.77777778	0	0	NA	0	0	NA	2.32E-29	4	2	2	1	NA	NA	NA	unphased	1.818181818	0.909090909	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214148077	20	59655609	T	C	-	-	-	-	-	-	35	0	0	88	21	23.86363636	0	0	NA	0	0	NA	3.45E-29	4	2	2	1	NA	NA	NA	unphased	1.561983471	0.780991736	2	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214148142	20	60230575	T	C	CDH4	CCDS13488.1	r.?	-	-	intronic	16	0	0	80	27	33.75	0	0	NA	0	0	NA	8.87E-42	4	2	2	1	NA	NA	NA	unphased	2.209090909	1.104545455	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214154233	21	15606746	A	C	-	-	-	-	-	-	41	0	0	54	23	42.59259259	0	0	NA	0	0	NA	1.12E-38	1.765333865	1	0	0.234666135	2	0	0.765333865	unphased	1.836076545	1.040073258	1.765333865	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214154247	21	15864679	T	C	SAMSN1	CCDS42906.1	r.?	-	-	intronic	36	0	0	50	24	48	0	0	NA	0	0	NA	6.39E-42	1.765333865	1	0	0.234666135	2	0	0.765333865	unphased	2.069178437	1.172117342	1.765333865	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214154412	21	18937362	G	C	CXADR	CCDS33519.1	r.?	-	-	intronic	20	0	0	46	14	30.43478261	0	0	NA	0	0	NA	1.26E-21	1.765333865	1	0	0.234666135	2	0	0.765333865	unphased	1.311979081	1.311979081	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214155009	21	30551303	G	C	C21orf7	CCDS13584.1	r.?	-	-	downstream	19	0	0	61	35	57.37704918	0	0	NA	0	0	NA	3.12E-64	1.765333865	1	0	0.234666135	2	0	0.765333865	unphased	2.473403186	1.401096549	1.765333865	0	0.98875	0.01125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214155089	21	32384473	T	C	TIAM1	ENST00000461148	r.?	-	-	intronic	22	0	0	38	8	21.05263158	0	0	NA	0	0	NA	1.67E-11	1.765333865	1	0	0.234666135	2	0	0.765333865	unphased	0.907534402	0.907534402	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214155253	21	34895024	T	C	GART	CCDS13627.1	r.?	-	-	intronic	38	0	0	54	13	24.07407407	0	0	NA	0	0	NA	1.12E-18	1.765333865	1	0	0.234666135	2	0	0.765333865	unphased	1.037782395	1.037782395	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214155503	21	39087905	T	C	KCNJ6	CCDS42927.1	r.?	-	-	intronic	27	0	0	65	7	10.76923077	0	0	NA	0	0	NA	4.22E-08	1.765333865	1	0	0.234666135	2	0	0.765333865	unphased	0.464238752	0.606583314	0.765333865	0.025	0.975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214155527	21	39500896	T	C	DSCR8	ENST00000357704	r.?	-	-	intronic	26	0	0	61	20	32.78688525	0	0	NA	0	0	NA	4.89E-31	1.765333865	1	0	0.234666135	2	0	0.765333865	unphased	1.413373249	1.413373249	1	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214157725	22	26665852	G	C	SEZ6L	CCDS13833.1	r.?	-	-	intronic	32	0	0	49	10	20.40816327	0	0	NA	0	0	NA	6.72E-14	2.072240472	2	0	0.927759528	2	1	0.072240472	unphased	0.942386738	0.942386738	1	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214158024	22	31651554	T	C	LIMK2	CCDS13891.1	r.?	-	-	intronic	26	0	0	46	13	28.26086957	0	0	NA	0	0	NA	1.07E-19	2.072240472	2	0	0.927759528	2	1	0.072240472	unphased	1.305000766	1.305000766	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214158551	22	40474795	T	C	TNRC6B	CCDS46712.1	r.?	-	-	intronic	23	0	0	42	10	23.80952381	0	0	NA	0	0	NA	1.24E-14	2.072240472	2	0	0.927759528	2	1	0.072240472	unphased	1.099451195	1.099451195	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214159333	3	1428534	G	C	CNTN6	CCDS2557.1	r.?	-	-	intronic	48	0	0	79	11	13.92405063	0	0	NA	0	0	NA	3.23E-13	3.412637193	3	0	0.587362807	4	0	0.412637193	unphased	0.82960771	0.82960771	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214159438	3	2588162	G	C	CNTN4	CCDS43041.1	r.?	-	-	intronic	22	0	0	72	40	55.55555556	0	0	NA	0	0	NA	2.22E-72	3.412637193	3	0	0.587362807	4	0	0.412637193	unphased	3.310050966	0.969939311	3.412637193	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214159983	3	8497135	G	C	ENSG00000234563	ENST00000446572	r.?	-	-	downstream	44	0	0	83	52	62.65060241	0	0	NA	0	0	NA	1.13E-97	3.412637193	3	0	0.587362807	4	0	0.412637193	unphased	3.732780366	1.093811078	3.412637193	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214160026	3	8836655	G	C	RAD18	ENST00000427329	r.?	-	-	intronic	11	0	0	61	37	60.6557377	0	0	NA	2	0	0	3.85E-69	3.412637193	3	0	0.587362807	4	0	0.412637193	unphased	3.613924497	1.058982919	3.412637193	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214160233	3	10920627	A	C	SLC6A11	CCDS2602.1	r.?	-	-	intronic	39	0	0	77	50	64.93506494	0	0	NA	0	0	NA	3.41E-95	3.412637193	3	0	0.587362807	4	0	0.412637193	unphased	3.868890739	1.133695298	3.412637193	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214160451	3	12980995	T	C	IQSEC1	CCDS33703.1	r.?	-	-	intronic	13	0	0	66	7	10.60606061	0	0	NA	0	0	NA	4.70E-08	3.412637193	3	0	0.587362807	4	0	0.412637193	unphased	0.631918821	0.631918821	1	0.01	0.99	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214160883	3	18026751	G	C	AC139618.1	ENST00000448265	r.?	-	-	intronic	29	0	0	86	54	62.79069767	0	0	NA	1	0	0	1.89E-101	3.412637193	3	0	0.587362807	4	0	0.412637193	unphased	3.74112737	1.096256988	3.412637193	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214160931	3	18721661	G	C	-	-	-	-	-	-	41	0	0	76	16	21.05263158	0	0	NA	0	0	NA	1.25E-21	3.412637193	3	0	0.587362807	4	0	0.412637193	unphased	1.254335103	1.254335103	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214161244	3	22402626	G	C	-	-	-	-	-	-	28	0	0	62	5	8.064516129	102	0	0	147	4	2.721088435	1.60E-05	3.412637193	3	0	0.587362807	4	0	0.412637193	unphased	0.480491269	1.16444004	0.412637193	0	1	0	2	1	0.006625822	1	YES	1_1	somatic	custom.pulldown.HiSeq
1352322	PD9768b	1214161896	3	30266972	T	C	-	-	-	-	-	-	34	0	0	68	8	11.76470588	0	0	NA	0	0	NA	2.21E-09	3.412637193	3	0	0.587362807	4	0	0.412637193	unphased	0.700951969	0.700951969	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214162124	3	33007468	A	C	-	-	-	-	-	-	27	0	0	94	43	45.74468085	0	0	NA	0	0	NA	1.03E-72	3.412637193	3	0	0.587362807	4	0	0.412637193	unphased	2.72551005	0.90850335	3	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214162366	3	35344445	T	C	-	-	-	-	-	-	37	0	0	62	8	12.90322581	125	0	0	209	31	14.83253589	1.04E-09	3	3	0	1	NA	NA	NA	unphased	0.715542522	0.715542522	1	0.005	0.995	0	2	1	1.93E-35	1	YES	1_1	somatic	custom.pulldown.HiSeq
1352322	PD9768b	1214162382	3	35798566	T	C	ENSG00000172995	CCDS2661.1	r.?	-	-	intronic	23	0	0	48	20	41.66666667	0	0	NA	0	0	NA	1.40E-33	3	3	0	1	NA	NA	NA	unphased	2.310606061	1.15530303	2	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214162782	3	41686275	G	C	ULK4	CCDS43071.1	r.?	-	-	intronic	14	0	0	34	20	58.82352941	0	0	NA	0	0	NA	1.24E-37	3	3	0	1	NA	NA	NA	unphased	3.262032086	1.087344029	3	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214162820	3	42182942	T	C	TRAK1	CCDS43072.1	r.?	-	-	intronic	22	0	0	78	22	28.20512821	0	0	NA	0	0	NA	2.58E-32	3	3	0	1	NA	NA	NA	unphased	1.564102564	0.782051282	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214163175	3	46658907	T	C	-	-	-	-	-	-	30	0	0	57	27	47.36842105	0	0	NA	0	0	NA	9.04E-47	3	3	0	1	NA	NA	NA	unphased	2.626794258	0.875598086	3	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214164028	3	59898026	G	C	FHIT	CCDS2894.1	r.?	-	-	intronic	27	0	0	48	4	8.333333333	0	0	NA	0	0	NA	0.000102016	2	2	0	1	NA	NA	NA	unphased	0.378787879	0.378787879	1	0.11375	0.88625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214166459	3	83885625	G	C	-	-	-	-	-	-	31	0	0	29	9	31.03448276	0	0	NA	0	0	NA	1.79E-14	2	2	0	1	NA	NA	NA	unphased	1.410658307	1.410658307	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214167437	3	100960174	G	C	IMPG2	CCDS2940.1	r.?	-	-	intronic	33	0	0	56	19	33.92857143	0	0	NA	0	0	NA	6.79E-30	2	2	0	1	NA	NA	NA	unphased	1.542207792	0.771103896	2	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214167664	3	104846273	A	C	-	-	-	-	-	-	39	0	0	55	9	16.36363636	0	0	NA	0	0	NA	1.01E-11	2	2	0	1	NA	NA	NA	unphased	0.743801653	0.743801653	1	0.005	0.995	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214168306	3	117638765	G	C	-	-	-	-	-	-	44	0	0	67	19	28.35820896	0	0	NA	0	0	NA	3.67E-28	2	2	0	1	NA	NA	NA	unphased	1.289009498	1.289009498	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214168496	3	121041606	A	C	STXBP5L	CCDS43137.1	r.?	-	-	intronic	19	0	0	58	4	6.896551724	0	0	NA	0	0	NA	0.000213772	2	2	0	1	NA	NA	NA	unphased	0.313479624	0.313479624	1	0.45	0.55	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214168920	3	127855832	T	C	RUVBL1	ENST00000464873	r.?	-	-	intronic	33	0	0	48	5	10.41666667	0	0	NA	0	0	NA	4.47E-06	2	2	0	1	NA	NA	NA	unphased	0.473484848	0.473484848	1	0.05375	0.94625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214168956	3	128548900	T	C	-	-	-	-	-	-	29	1	3.448275862	51	8	15.68627451	0	0	NA	0	0	NA	2.05E-10	2	2	0	1	NA	NA	NA	unphased	0.713012478	0.713012478	1	0.00125	0.99875	0	2	0.135292269	1	1	NA	NA	NA	NA
1352322	PD9768b	1214168957	3	128548931	G	C	-	-	-	-	-	-	34	1	2.941176471	50	8	16	0	0	NA	0	0	NA	1.74E-10	2	2	0	1	NA	NA	NA	unphased	0.727272727	0.727272727	1	0	1	0	2	0.156694864	1	1	NA	NA	NA	NA
1352322	PD9768b	1214169162	3	131465511	A	C	CPNE4	CCDS3072.1	r.?	-	-	intronic	34	0	0	65	26	40	0	0	NA	0	0	NA	1.24E-42	2	2	0	1	NA	NA	NA	unphased	1.818181818	0.909090909	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214169175	3	131609189	A	C	CPNE4	CCDS3072.1	r.?	-	-	intronic	29	0	0	62	19	30.64516129	0	0	NA	0	0	NA	6.66E-29	2	2	0	1	NA	NA	NA	unphased	1.392961877	1.392961877	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214169629	3	139561669	G	C	-	-	-	-	-	-	21	0	0	54	7	12.96296296	0	0	NA	0	0	NA	1.13E-08	2	2	0	1	NA	NA	NA	unphased	0.589225589	0.589225589	1	0.0175	0.9825	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214169846	3	143569238	G	C	SLC9A9	CCDS33872.1	r.?	-	-	upstream	34	0	0	73	15	20.54794521	0	0	NA	0	0	NA	3.38E-20	2	2	0	1	NA	NA	NA	unphased	0.933997509	0.933997509	1	0.00125	0.9975	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214170385	3	154905953	G	C	MME	CCDS3172.1	r.?	-	-	downstream	36	0	0	66	9	13.63636364	0	0	NA	0	0	NA	5.59E-11	2	2	0	1	NA	NA	NA	unphased	0.619834711	0.619834711	1	0.01875	0.98125	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214170798	3	163330294	T	C	-	-	-	-	-	-	15	0	0	29	10	34.48275862	0	0	NA	0	0	NA	1.79E-16	2	2	0	1	NA	NA	NA	unphased	1.567398119	1.567398119	1	0	0.99625	0.00375	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214170972	3	165713200	T	C	-	-	-	-	-	-	26	0	0	54	30	55.55555556	0	0	NA	0	0	NA	1.16E-54	2	2	0	1	NA	NA	NA	unphased	2.525252525	1.262626263	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214171096	3	168233345	T	C	-	-	-	-	-	-	39	0	0	50	6	12	0	0	NA	0	0	NA	2.06E-07	2	2	0	1	NA	NA	NA	unphased	0.545454545	0.545454545	1	0.03	0.97	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214171419	3	174581321	G	C	NAALADL2	CCDS46960.1	r.?	-	-	intronic	24	0	0	48	6	12.5	0	0	NA	0	0	NA	1.60E-07	2	2	0	1	NA	NA	NA	unphased	0.568181818	0.568181818	1	0.02375	0.97625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214172089	3	185272037	T	C	LIPH	CCDS3272.1	r.?	-	-	upstream	27	0	0	69	29	42.02898551	0	0	NA	0	0	NA	3.64E-48	2	2	0	1	NA	NA	NA	unphased	1.910408432	0.955204216	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214172602	3	195001577	T	C	ACAP2	CCDS33924.1	r.?	-	-	intronic	16	0	0	62	26	41.93548387	0	0	NA	0	0	NA	2.63E-43	2	2	0	1	NA	NA	NA	unphased	1.906158358	0.953079179	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214173161	3	197684644	T	C	LMLN	CCDS3332.1	r.?	-	-	upstream	37	0	0	53	12	22.64150943	0	0	NA	0	0	NA	5.39E-17	2	2	0	1	NA	NA	NA	unphased	1.02915952	1.02915952	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214174095	4	13489172	A	C	RAB28	CCDS3409.1	r.?	-	-	upstream	25	0	0	49	23	46.93877551	0	0	NA	0	0	NA	6.14E-40	1.74953812	1	0	0.25046188	2	0	0.74953812	unphased	2.016016966	1.152313826	1.74953812	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214174108	4	13670591	T	C	-	-	-	-	-	-	29	0	0	51	17	33.33333333	0	0	NA	0	0	NA	9.59E-27	1.74953812	1	0	0.25046188	2	0	0.74953812	unphased	1.431664222	1.431664222	1	0	0.99625	0.00375	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214174932	4	31222312	G	C	-	-	-	-	-	-	26	0	0	38	8	21.05263158	0	0	NA	0	0	NA	1.67E-11	1.74953812	1	0	0.25046188	2	0	0.74953812	unphased	0.904208982	0.904208982	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214175321	4	37807592	G	C	-	-	-	-	-	-	33	0	0	48	22	45.83333333	0	0	NA	0	0	NA	5.76E-38	1.74953812	1	0	0.25046188	2	0	0.74953812	unphased	1.968538305	1.125176001	1.74953812	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214177140	4	49167545	G	C	-	-	-	-	-	-	134	0	0	190	15	7.894736842	0	0	NA	0	0	NA	8.84E-14	3	2	1	1	NA	NA	NA	unphased	0.437799043	0.437799043	1	0.94	0.06	0	1	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214179801	4	58525473	G	C	-	-	-	-	-	-	29	0	0	85	15	17.64705882	0	0	NA	0	0	NA	3.95E-19	3	2	1	1	NA	NA	NA	unphased	0.978609626	0.978609626	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214179809	4	58581746	T	C	-	-	-	-	-	-	29	0	0	58	10	17.24137931	0	0	NA	0	0	NA	4.10E-13	3	2	1	1	NA	NA	NA	unphased	0.956112853	0.956112853	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214179873	4	59892110	G	C	-	-	-	-	-	-	37	0	0	55	8	14.54545455	75	0	0	103	8	7.766990291	3.86E-10	3	2	1	1	NA	NA	NA	unphased	0.80661157	0.80661157	1	0.00375	0.99625	0	2	1	6.09E-08	1	YES	1_1	somatic	custom.pulldown.HiSeq
1352322	PD9768b	1214179874	4	59892120	G	C	-	-	-	-	-	-	42	0	0	57	7	12.28070175	84	0	0	108	9	8.333333333	1.66E-08	3	2	1	1	NA	NA	NA	unphased	0.681020734	0.681020734	1	0.005	0.995	0	2	1	4.89E-09	1	YES	1_1	somatic	custom.pulldown.HiSeq
1352322	PD9768b	1214179876	4	59892208	G	C	-	-	-	-	-	-	37	0	0	54	7	12.96296296	103	0	0	127	16	12.5984252	1.13E-08	3	2	1	1	NA	NA	NA	unphased	0.718855219	0.718855219	1	0.005	0.995	0	2	1	7.39E-18	1	YES	1_1	somatic	custom.pulldown.HiSeq
1352322	PD9768b	1214179883	4	59964180	G	C	-	-	-	-	-	-	31	0	0	61	12	19.67213115	78	0	0	108	13	12.03703704	3.39E-16	3	2	1	1	NA	NA	NA	unphased	1.090909091	1.090909091	1	0.00125	0.99875	0	2	1	1.62E-14	1	YES	1_1	somatic	custom.pulldown.HiSeq
1352322	PD9768b	1214179886	4	59964251	G	C	-	-	-	-	-	-	31	0	0	64	9	14.0625	65	0	0	137	23	16.78832117	4.20E-11	3	2	1	1	NA	NA	NA	unphased	0.779829545	0.779829545	1	0.00125	0.99875	0	2	1	5.26E-28	1	YES	1_1	somatic	custom.pulldown.HiSeq
1352322	PD9768b	1214179971	4	61582972	T	C	-	-	-	-	-	-	47	0	0	47	15	31.91489362	0	0	NA	0	0	NA	1.97E-23	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	1.372661875	1.372661875	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214180051	4	63322096	A	C	-	-	-	-	-	-	26	0	0	49	13	26.53061224	0	0	NA	0	0	NA	2.71E-19	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	1.141083545	1.141083545	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214180055	4	63502930	G	C	-	-	-	-	-	-	38	0	0	60	25	41.66666667	0	0	NA	0	0	NA	1.31E-41	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	1.792086337	1.020810355	1.755552662	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214180568	4	74071241	G	C	ANKRD17	CCDS34004.1	r.?	-	-	intronic	36	0	0	58	13	22.4137931	0	0	NA	0	0	NA	3.12E-18	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	0.964018857	0.964018857	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214180734	4	78404746	T	C	-	-	-	-	-	-	40	0	0	48	26	54.16666667	0	0	NA	0	0	NA	3.67E-47	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	2.329712238	1.327053462	1.755552662	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214180808	4	80147200	A	C	-	-	-	-	-	-	28	0	0	59	26	44.06779661	2	0	0	0	0	NA	5.03E-44	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	1.895359109	1.079636714	1.755552662	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214181310	4	90211205	A	C	GPRIN3	CCDS34030.1	r.?	-	-	intronic	22	0	0	54	26	48.14814815	0	0	NA	0	0	NA	2.44E-45	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	2.070855322	1.179603077	1.755552662	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214181453	4	94223207	T	C	GRID2	CCDS3637.1	r.?	-	-	intronic	39	0	0	55	5	9.090909091	0	0	NA	0	0	NA	8.83E-06	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	0.391000655	0.517502849	0.755552662	0.0325	0.9675	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214181656	4	98655626	T	C	C4orf37	CCDS3645.1	r.?	-	-	intronic	37	0	0	49	23	46.93877551	0	0	NA	0	0	NA	6.14E-40	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	2.018840118	1.149974114	1.755552662	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214182449	4	115365729	G	C	-	-	-	-	-	-	29	0	0	55	11	20	0	0	NA	0	0	NA	4.77E-15	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	0.860201442	1.138506268	0.755552662	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214182866	4	123158429	T	C	KIAA1109	CCDS43267.1	r.?	-	-	intronic	35	0	0	63	24	38.0952381	0	0	NA	0	0	NA	7.74E-39	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	1.638478936	0.933312325	1.755552662	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214182917	4	124455978	T	C	-	-	-	-	-	-	33	0	0	51	24	47.05882353	0	0	NA	0	0	NA	1.20E-41	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	2.024003392	1.152915225	1.755552662	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214183287	4	132226963	G	C	-	-	-	-	-	-	35	0	0	47	19	40.42553191	0	0	NA	0	0	NA	1.16E-31	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	1.738705041	0.990403238	1.755552662	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214183308	4	132500317	G	C	-	-	-	-	-	-	33	0	0	56	25	44.64285714	0	0	NA	0	0	NA	1.43E-42	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	1.920092504	1.09372538	1.755552662	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214183643	4	136549455	G	C	-	-	-	-	-	-	29	0	0	57	26	45.61403509	0	0	NA	0	0	NA	1.57E-44	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	1.961862937	1.117518704	1.755552662	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214183652	4	136655629	G	C	-	-	-	-	-	-	17	0	0	33	7	21.21212121	0	0	NA	0	0	NA	2.98E-10	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	0.912334862	0.912334862	1	0.00375	0.99625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214184074	4	145099649	T	C	-	-	-	-	-	-	32	0	0	61	18	29.50819672	0	0	NA	0	0	NA	4.08E-27	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	1.269149668	1.269149668	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214184971	4	163463098	T	C	-	-	-	-	-	-	43	0	0	43	8	18.60465116	0	0	NA	0	0	NA	4.85E-11	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	0.800187388	1.059075598	0.755552662	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214185232	4	167860463	T	C	SPOCK3	CCDS34095.1	r.?	-	-	intronic	22	0	0	60	21	35	0	0	NA	0	0	NA	3.16E-33	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	1.505352523	0.857480698	1.755552662	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214185260	4	168290496	A	C	-	-	-	-	-	-	42	0	0	53	11	20.75471698	0	0	NA	0	0	NA	3.07E-15	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	0.892661873	0.892661873	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214185293	4	168669850	T	C	-	-	-	-	-	-	35	0	0	39	11	28.20512821	0	0	NA	0	0	NA	7.20E-17	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	1.213104597	1.213104597	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214185558	4	173730274	G	C	GALNTL6	CCDS34104.1	r.?	-	-	intronic	27	0	0	56	13	23.21428571	0	0	NA	0	0	NA	1.89E-18	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	0.998448102	0.998448102	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214185807	4	178565760	A	C	-	-	-	-	-	-	32	0	0	48	7	14.58333333	0	0	NA	0	0	NA	4.81E-09	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	0.627230218	0.83016082	0.755552662	0.00375	0.99625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214185900	4	180144246	G	C	-	-	-	-	-	-	38	0	0	42	15	35.71428571	0	0	NA	0	0	NA	2.65E-24	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	1.536074003	0.874980304	1.755552662	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214186429	4	187515466	T	C	FAT1	CCDS47177.1	r.?	-	-	intronic	6	0	0	50	12	24	0	0	NA	0	0	NA	2.49E-17	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	1.03224173	1.03224173	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214186703	4	190244023	A	C	-	-	-	-	-	-	45	0	0	54	25	46.2962963	0	0	NA	0	0	NA	4.36E-43	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	1.991207041	1.134233728	1.755552662	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214188581	5	5987357	G	C	-	-	-	-	-	-	31	0	0	66	10	15.15151515	0	0	NA	0	0	NA	1.60E-12	3	2	1	1	NA	NA	NA	unphased	0.840220386	0.840220386	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214188584	5	6048413	A	C	-	-	-	-	-	-	32	0	0	62	9	14.51612903	0	0	NA	0	0	NA	3.12E-11	3	2	1	1	NA	NA	NA	unphased	0.804985337	0.804985337	1	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214188750	5	8149495	A	C	-	-	-	-	-	-	35	0	0	82	11	13.41463415	0	0	NA	0	0	NA	4.94E-13	3	2	1	1	NA	NA	NA	unphased	0.743902439	0.743902439	1	0.00625	0.99375	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214188880	5	10024009	A	C	-	-	-	-	-	-	27	0	0	70	7	10	0	0	NA	0	0	NA	7.11E-08	3	2	1	1	NA	NA	NA	unphased	0.554545455	0.554545455	1	0.03625	0.96375	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214188891	5	10162189	T	C	-	-	-	-	-	-	30	0	0	64	11	17.1875	0	0	NA	0	0	NA	2.85E-14	3	2	1	1	NA	NA	NA	unphased	0.953125	0.953125	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214189066	5	12884502	T	C	-	-	-	-	-	-	34	0	0	61	9	14.75409836	0	0	NA	0	0	NA	2.68E-11	3	2	1	1	NA	NA	NA	unphased	0.818181818	0.818181818	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214189162	5	14239053	G	C	TRIO	CCDS3883.1	r.?	-	-	intronic	28	0	0	65	8	12.30769231	0	0	NA	0	0	NA	1.53E-09	3	2	1	1	NA	NA	NA	unphased	0.682517483	0.682517483	1	0.00375	0.99625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214189537	5	19348472	T	C	-	-	-	-	-	-	38	0	0	59	10	16.94915254	0	0	NA	0	0	NA	4.91E-13	3	2	1	1	NA	NA	NA	unphased	0.93990755	0.93990755	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214189823	5	22153221	T	C	CDH12	CCDS3890.1	r.?	-	-	intronic	36	0	0	59	5	8.474576271	0	0	NA	0	0	NA	1.25E-05	3	2	1	1	NA	NA	NA	unphased	0.469953775	0.469953775	1	0.0425	0.9575	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214189919	5	23949419	T	C	C5orf17	ENST00000507936	r.?	-	-	upstream	43	0	0	54	14	25.92592593	0	0	NA	0	0	NA	1.64E-20	3	2	1	1	NA	NA	NA	unphased	1.437710438	1.437710438	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214189925	5	24027054	T	C	-	-	-	-	-	-	32	0	0	65	13	20	0	0	NA	0	0	NA	1.57E-17	3	2	1	1	NA	NA	NA	unphased	1.109090909	1.109090909	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214189989	5	24812359	A	C	-	-	-	-	-	-	29	0	0	50	15	30	0	0	NA	0	0	NA	5.83E-23	3	2	1	1	NA	NA	NA	unphased	1.663636364	0.831818182	2	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214190122	5	26853076	G	C	-	-	-	-	-	-	33	0	0	70	8	11.42857143	0	0	NA	0	0	NA	2.80E-09	3	2	1	1	NA	NA	NA	unphased	0.633766234	0.633766234	1	0.015	0.985	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214190150	5	27401346	G	C	-	-	-	-	-	-	32	0	0	54	20	37.03703704	0	0	NA	0	0	NA	2.61E-32	3	2	1	1	NA	NA	NA	unphased	2.053872054	1.026936027	2	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214190376	5	30512287	A	C	-	-	-	-	-	-	43	0	0	69	11	15.94202899	0	0	NA	0	0	NA	6.82E-14	3	2	1	1	NA	NA	NA	unphased	0.884057971	0.884057971	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214191292	5	45498402	T	C	HCN1	CCDS3952.1	r.?	-	-	intronic	34	0	0	50	10	20	0	0	NA	0	0	NA	8.36E-14	3	2	1	1	NA	NA	NA	unphased	1.109090909	1.109090909	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214192067	5	54312030	A	C	-	-	-	-	-	-	35	0	0	51	5	9.803921569	0	0	NA	0	0	NA	6.06E-06	1.761129122	1	0	0.238870878	2	0	0.761129122	unphased	0.422214085	0.554720708	0.761129122	0.02875	0.97125	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214192862	5	72764097	T	C	-	-	-	-	-	-	34	0	0	41	12	29.26829268	0	0	NA	0	0	NA	1.69E-18	1.754521149	1	0	0.245478851	2	0	0.754521149	unphased	1.258529471	1.258529471	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214193693	5	90629714	T	C	-	-	-	-	-	-	32	0	0	52	24	46.15384615	0	0	NA	0	0	NA	2.22E-41	1.754521149	1	0	0.245478851	2	0	0.754521149	unphased	1.984604167	1.131137215	1.754521149	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214193727	5	91599549	T	C	-	-	-	-	-	-	37	0	0	54	6	11.11111111	115	0	0	101	12	11.88118812	3.29E-07	1.754521149	1	0	0.245478851	2	0	0.754521149	unphased	0.477775077	0.633216283	0.754521149	0.01375	0.98625	0	2	1	1.93E-13	1	YES	1_1	somatic	custom.pulldown.HiSeq
1352322	PD9768b	1214193831	5	95397018	T	C	-	-	-	-	-	-	29	0	0	53	20	37.73584906	0	0	NA	0	0	NA	1.65E-32	1.754521149	1	0	0.245478851	2	0	0.754521149	unphased	1.622632337	0.92482917	1.754521149	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214193929	5	97055092	A	C	-	-	-	-	-	-	21	0	0	53	12	22.64150943	0	0	NA	0	0	NA	5.39E-17	1.754521149	1	0	0.245478851	2	0	0.754521149	unphased	0.973579402	0.973579402	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214193947	5	97618350	T	C	-	-	-	-	-	-	27	0	0	42	6	14.28571429	0	0	NA	0	0	NA	7.02E-08	1.754521149	1	0	0.245478851	2	0	0.754521149	unphased	0.614282242	0.814135221	0.754521149	0.005	0.995	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214194647	5	111623054	T	C	EPB41L4A	CCDS43350.1	r.?	-	-	intronic	29	0	0	53	28	52.83018868	0	0	NA	0	0	NA	2.98E-50	1.754521149	1	0	0.245478851	2	0	0.754521149	unphased	2.271685272	1.294760838	1.754521149	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214194843	5	116264155	T	C	-	-	-	-	-	-	39	0	0	69	30	43.47826087	2	0	0	0	0	NA	2.44E-50	1.788223154	1	0	0.211776846	2	0	0.788223154	unphased	1.884207695	1.05367593	1.788223154	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214194890	5	117364771	A	C	ENSG00000230431	ENST00000438991	r.?	-	-	intronic	35	0	0	67	7	10.44776119	0	0	NA	0	0	NA	5.23E-08	1.788223154	1	0	0.211776846	2	0	0.788223154	unphased	0.452772297	0.574421463	0.788223154	0.03125	0.96875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214195600	5	133322474	T	C	VDAC1	CCDS4168.1	r.?	-	-	intronic	26	0	0	62	33	53.22580645	0	0	NA	0	0	NA	4.14E-59	1.788223154	1	0	0.211776846	2	0	0.788223154	unphased	2.306634905	1.289903276	1.788223154	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214195766	5	136955849	T	C	KLHL3	CCDS4192.1	r.4146a>g	c.?	p.?	3'UTR variant	30	0	0	53	24	45.28301887	0	0	NA	0	0	NA	4.04E-41	1.788223154	1	0	0.211776846	2	0	0.788223154	unphased	1.96242009	1.097413422	1.788223154	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214196315	5	148283209	G	C	-	-	-	-	-	-	39	0	0	56	31	55.35714286	0	0	NA	0	0	NA	2.30E-56	1.788223154	1	0	0.211776846	2	0	0.788223154	unphased	2.399000155	1.341555247	1.788223154	0	0.995	0.005	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214196483	5	151832568	T	C	-	-	-	-	-	-	36	0	0	40	22	55	0	0	NA	0	0	NA	2.48E-40	1.788223154	1	0	0.211776846	2	0	0.788223154	unphased	2.383522735	1.332900052	1.788223154	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214196496	5	152164950	G	C	-	-	-	-	-	-	33	0	0	49	21	42.85714286	0	0	NA	0	0	NA	1.63E-35	1.788223154	1	0	0.211776846	2	0	0.788223154	unphased	1.857290443	1.038623417	1.788223154	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214196893	5	160882542	T	C	GABRB2	CCDS4355.1	r.?	-	-	intronic	26	0	0	55	17	30.90909091	0	0	NA	0	0	NA	4.35E-26	1.788223154	1	0	0.211776846	2	0	0.788223154	unphased	1.33950038	1.33950038	1	0	0.99625	0.00375	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214196911	5	161416601	G	C	-	-	-	-	-	-	19	0	0	54	12	22.22222222	0	0	NA	0	0	NA	6.90E-17	1.788223154	1	0	0.211776846	2	0	0.788223154	unphased	0.963039489	0.963039489	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214196935	5	162147940	A	C	-	-	-	-	-	-	39	0	0	44	19	43.18181818	0	0	NA	0	0	NA	2.39E-32	1.788223154	1	0	0.211776846	2	0	0.788223154	unphased	1.871360825	1.046491776	1.788223154	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214196951	5	162523949	G	C	-	-	-	-	-	-	35	0	0	56	24	42.85714286	0	0	NA	0	0	NA	2.23E-40	1.788223154	1	0	0.211776846	2	0	0.788223154	unphased	1.857290443	1.038623417	1.788223154	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214197110	5	165310833	T	C	-	-	-	-	-	-	20	0	0	39	15	38.46153846	0	0	NA	0	0	NA	6.85E-25	1.788223154	1	0	0.211776846	2	0	0.788223154	unphased	1.666799115	0.932097938	1.788223154	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214197276	5	167985696	T	C	PANK3	CCDS4368.1	r.?	-	-	intronic	35	0	0	38	7	18.42105263	2	0	0	0	0	NA	8.61E-10	1.82619718	1	0	0.17380282	2	0	0.82619718	unphased	0.805304265	0.974711951	0.82619718	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214197402	5	170193818	G	C	-	-	-	-	-	-	22	0	0	46	6	13.04347826	0	0	NA	0	0	NA	1.23E-07	1.82619718	1	0	0.17380282	2	0	0.82619718	unphased	0.570215442	0.690168711	0.82619718	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214197495	5	171177099	G	C	-	-	-	-	-	-	19	0	0	69	20	28.98550725	0	0	NA	0	0	NA	8.73E-30	4.20005043	4	0	0.79994957	4	1	0.20005043	unphased	1.955218833	0.977609417	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214198696	6	1140142	G	C	-	-	-	-	-	-	33	0	0	67	8	11.94029851	0	0	NA	0	0	NA	1.96E-09	4	2	2	1	NA	NA	NA	unphased	0.781546811	0.781546811	1	0.00375	0.99625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214198735	6	1545071	T	C	-	-	-	-	-	-	35	0	0	69	8	11.5942029	0	0	NA	0	0	NA	2.49E-09	4	2	2	1	NA	NA	NA	unphased	0.758893281	0.758893281	1	0.005	0.995	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214199316	6	8655727	G	C	AL135912.1	ENST00000498984	r.?	-	-	intronic	30	0	0	87	12	13.79310345	0	0	NA	0	0	NA	3.06E-14	3.560177833	2	1	0.439822167	2	2	0.560177833	unphased	0.84215619	0.84215619	1	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214199423	6	10151010	G	C	OFCC1	ENST00000481704	r.?	-	-	intronic	32	0	0	69	21	30.43478261	0	0	NA	0	0	NA	1.02E-31	3.560177833	2	1	0.439822167	2	2	0.560177833	unphased	1.858235941	0.929117971	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214199914	6	15720411	T	C	-	-	-	-	-	-	33	0	0	80	24	30	0	0	NA	0	0	NA	7.39E-36	3.560177833	2	1	0.439822167	2	2	0.560177833	unphased	1.831689713	0.915844857	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214200043	6	17392041	G	C	CAP2	CCDS4539.1	r.?	-	-	upstream	35	0	0	71	23	32.3943662	155	0	0	172	68	39.53488372	2.51E-35	3.560177833	2	1	0.439822167	2	2	0.560177833	unphased	1.977880911	0.988940456	2	0	1	0	2	1	1.69E-108	1	YES	1_1	somatic	custom.pulldown.HiSeq
1352322	PD9768b	1214200361	6	20369982	A	C	-	-	-	-	-	-	17	0	0	71	8	11.26760563	0	0	NA	0	0	NA	3.14E-09	3.560177833	2	1	0.439822167	2	2	0.560177833	unphased	0.687958578	1.228107465	0.560177833	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214200561	6	22107484	T	C	-	-	-	-	-	-	30	0	0	73	26	35.61643836	0	0	NA	0	0	NA	5.09E-41	3.560177833	2	1	0.439822167	2	2	0.560177833	unphased	2.174608792	1.087304396	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214200860	6	25452091	T	C	LRRC16A	ENST00000329474	r.?	-	-	intronic	33	0	0	53	18	33.96226415	0	0	NA	0	0	NA	2.09E-28	3.560177833	2	1	0.439822167	2	2	0.560177833	unphased	2.073610996	1.036805498	2	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214200882	6	25781191	G	C	SLC17A4	CCDS4564.1	r.3388g>c	c.?	p.?	3'UTR variant	32	0	0	89	11	12.35955056	0	0	NA	0	0	NA	1.25E-12	3.560177833	2	1	0.439822167	2	2	0.560177833	unphased	0.754628721	0.754628721	1	0.00625	0.99375	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214201395	6	30423905	T	C	-	-	-	-	-	-	16	0	0	59	16	27.11864407	0	0	NA	0	0	NA	1.37E-23	3.560177833	2	1	0.439822167	2	2	0.560177833	unphased	1.655764713	1.149978623	1.439822167	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214201913	6	33454795	G	C	-	-	-	-	-	-	34	0	0	48	16	33.33333333	0	0	NA	0	0	NA	2.96E-25	3.560177833	2	1	0.439822167	2	2	0.560177833	unphased	2.035210793	1.017605396	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214202913	6	45948450	A	C	CLIC5	CCDS47438.1	r.?	-	-	intronic	36	0	0	59	18	30.50847458	0	0	NA	0	0	NA	2.03E-27	3.560177833	2	1	0.439822167	2	2	0.560177833	unphased	1.862735302	0.931367651	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214202943	6	46708384	G	C	ENSG00000223468	ENST00000412212	r.?	-	-	intronic	39	0	0	64	10	15.625	0	0	NA	0	0	NA	1.16E-12	3.560177833	2	1	0.439822167	2	2	0.560177833	unphased	0.954005059	0.954005059	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214203074	6	48657028	G	C	-	-	-	-	-	-	26	0	0	56	14	25	0	0	NA	0	0	NA	2.91E-20	3.560177833	2	1	0.439822167	2	2	0.560177833	unphased	1.526408095	1.526408095	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214203496	6	55619230	T	C	BMP5	CCDS4958.1	r.3165a>g	c.?	p.?	3'UTR variant	44	0	0	65	10	15.38461538	0	0	NA	0	0	NA	1.36E-12	3.560177833	2	1	0.439822167	2	2	0.560177833	unphased	0.939328058	0.939328058	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214204001	6	58623541	G	C	-	-	-	-	-	-	31	0	0	84	19	22.61904762	0	0	NA	0	0	NA	4.62E-26	3.560177833	2	1	0.439822167	2	2	0.560177833	unphased	1.381035895	1.381035895	1	0	0.99625	0.00375	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214204002	6	58623568	A	C	-	-	-	-	-	-	32	0	0	86	21	24.41860465	0	0	NA	0	0	NA	2.01E-29	3.560177833	2	1	0.439822167	2	2	0.560177833	unphased	1.490910232	1.035482204	1.439822167	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214204536	6	68291365	T	C	-	-	-	-	-	-	38	0	0	54	18	33.33333333	0	0	NA	0	0	NA	3.12E-28	2.563226083	1	1	0.436773917	2	1	0.563226083	unphased	1.702893543	1.089345656	1.563226083	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214204773	6	72843782	T	C	RIMS1	CCDS47449.1	r.?	-	-	intronic	45	0	0	56	11	19.64285714	0	0	NA	0	0	NA	5.91E-15	2.563226083	1	1	0.436773917	2	1	0.563226083	unphased	1.003490838	1.003490838	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214205060	6	78016311	G	C	-	-	-	-	-	-	28	0	0	62	9	14.51612903	0	0	NA	0	0	NA	3.12E-11	2.563226083	1	1	0.436773917	2	1	0.563226083	unphased	0.741582672	0.741582672	1	0.005	0.995	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214205080	6	78345691	T	C	-	-	-	-	-	-	35	0	0	58	16	27.5862069	139	0	0	143	42	29.37062937	1.00E-23	2.563226083	1	1	0.436773917	2	1	0.563226083	unphased	1.409291208	1.409291208	1	0	0.9975	0.0025	2	1	4.04E-61	1	YES	1_1	somatic	custom.pulldown.HiSeq
1352322	PD9768b	1214205095	6	78584872	G	C	-	-	-	-	-	-	26	0	0	47	9	19.14893617	0	0	NA	0	0	NA	2.24E-12	2.563226083	1	1	0.436773917	2	1	0.563226083	unphased	0.978257993	0.978257993	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214205264	6	81487610	T	C	-	-	-	-	-	-	29	0	0	36	9	25	0	0	NA	0	0	NA	1.63E-13	2.563226083	1	1	0.436773917	2	1	0.563226083	unphased	1.277170157	1.277170157	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214205595	6	86817289	G	C	-	-	-	-	-	-	35	0	0	75	18	24	0	0	NA	0	0	NA	2.78E-25	2.563226083	1	1	0.436773917	2	1	0.563226083	unphased	1.226083351	1.226083351	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214205614	6	87234051	T	C	-	-	-	-	-	-	41	0	0	52	18	34.61538462	0	0	NA	0	0	NA	1.39E-28	2.563226083	1	1	0.436773917	2	1	0.563226083	unphased	1.768389448	1.131243566	1.563226083	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214205647	6	87723206	G	C	HTR1E	CCDS5006.1	r.?	-	-	intronic	37	0	0	62	8	12.90322581	0	0	NA	0	0	NA	1.04E-09	2.563226083	1	1	0.436773917	2	1	0.563226083	unphased	0.659184597	1.170372994	0.563226083	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214205855	6	90693510	G	C	BACH2	CCDS5026.1	r.?	-	-	intronic	24	0	0	58	15	25.86206897	0	0	NA	0	0	NA	7.42E-22	2.563226083	1	1	0.436773917	2	1	0.563226083	unphased	1.321210507	1.321210507	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214206261	6	98725399	G	C	-	-	-	-	-	-	38	0	0	51	7	13.7254902	0	0	NA	0	0	NA	7.46E-09	2.563226083	1	1	0.436773917	2	1	0.563226083	unphased	0.701191459	1.244955587	0.563226083	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214206299	6	99491086	T	C	-	-	-	-	-	-	29	0	0	54	13	24.07407407	0	0	NA	0	0	NA	1.12E-18	2.563226083	1	1	0.436773917	2	1	0.563226083	unphased	1.229867559	1.229867559	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214207189	6	115527054	T	C	-	-	-	-	-	-	34	0	0	62	7	11.29032258	0	0	NA	0	0	NA	3.02E-08	2.563226083	1	1	0.436773917	2	1	0.563226083	unphased	0.576786523	1.02407637	0.563226083	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214207684	6	122470169	G	C	-	-	-	-	-	-	34	0	0	88	7	7.954545455	0	0	NA	0	0	NA	3.48E-07	3.675145481	2	1	0.324854519	2	2	0.675145481	unphased	0.494820457	0.732909381	0.675145481	0.0075	0.99125	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214207819	6	124041888	T	C	-	-	-	-	-	-	38	0	0	75	11	14.66666667	0	0	NA	0	0	NA	1.78E-13	3.675145481	2	1	0.324854519	2	2	0.675145481	unphased	0.91235467	0.91235467	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214207847	6	124526060	G	C	NKAIN2	CCDS34526.1	r.?	-	-	intronic	32	0	0	81	5	6.172839506	0	0	NA	0	0	NA	5.84E-05	3.675145481	2	1	0.324854519	2	2	0.675145481	unphased	0.383987656	0.568748021	0.675145481	0.01625	0.98375	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214208079	6	128143055	T	C	THEMIS	CCDS34534.1	r.?	-	-	intronic	29	0	0	67	21	31.34328358	0	0	NA	0	0	NA	4.96E-32	3.675145481	2	1	0.324854519	2	2	0.675145481	unphased	1.949740307	0.974870153	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214208293	6	131578775	G	C	AKAP7	CCDS5142.1	r.?	-	-	intronic	25	0	0	72	15	20.83333333	0	0	NA	0	0	NA	2.70E-20	3.675145481	2	1	0.324854519	2	2	0.675145481	unphased	1.295958339	1.295958339	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214208407	6	133153621	T	C	-	-	-	-	-	-	32	0	0	73	20	27.39726027	0	0	NA	0	0	NA	3.18E-29	3.675145481	2	1	0.324854519	2	2	0.675145481	unphased	1.70427398	0.85213699	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214209067	6	143698963	G	C	-	-	-	-	-	-	33	0	0	82	5	6.097560976	0	0	NA	0	0	NA	6.19E-05	3.675145481	2	1	0.324854519	2	2	0.675145481	unphased	0.37930488	0.561812069	0.675145481	0.01875	0.98125	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214209297	6	147616589	A	C	STXBP5	CCDS5211.1	r.?	-	-	intronic	37	0	0	69	4	5.797101449	1	0	0	0	0	NA	0.000416985	3.675145481	2	1	0.324854519	2	2	0.675145481	unphased	0.360614494	0.534128576	0.675145481	0.015	0.985	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214209471	6	149934444	A	C	KATNA1	CCDS5217.1	r.?	-	-	intronic	23	0	0	70	20	28.57142857	0	0	NA	0	0	NA	1.22E-29	3.675145481	2	1	0.324854519	2	2	0.675145481	unphased	1.777314293	0.888657147	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214209584	6	151047151	T	C	PLEKHG1	CCDS34552.1	r.?	-	-	intronic	29	0	0	79	8	10.12658228	0	0	NA	0	0	NA	7.43E-09	3.675145481	2	1	0.324854519	2	2	0.675145481	unphased	0.62993418	0.933034728	0.675145481	0.0025	0.995	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214209691	6	151860914	T	C	C6orf97	CCDS43515.1	r.?	-	-	intronic	41	0	0	64	18	28.125	0	0	NA	0	0	NA	1.10E-26	3.675145481	2	1	0.324854519	2	2	0.675145481	unphased	1.749543757	0.874771879	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214209807	6	153492716	G	C	-	-	-	-	-	-	35	0	0	60	5	8.333333333	0	0	NA	0	0	NA	1.36E-05	3.675145481	2	1	0.324854519	2	2	0.675145481	unphased	0.518383336	0.767809828	0.675145481	0.0075	0.9925	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214210091	6	156823312	G	C	-	-	-	-	-	-	27	0	0	76	20	26.31578947	0	0	NA	0	0	NA	7.96E-29	3.675145481	2	1	0.324854519	2	2	0.675145481	unphased	1.637000007	0.818500003	2	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214210607	6	162156136	T	C	PARK2	CCDS5281.1	r.?	-	-	intronic	35	0	0	80	6	7.5	0	0	NA	0	0	NA	3.42E-06	4.7421074	2	2	0.2578926	3	2	0.7421074	unphased	0.546567146	0.736506799	0.7421074	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214210686	6	162977836	G	C	PARK2	CCDS5281.1	r.?	-	-	intronic	16	0	0	51	16	31.37254902	0	0	NA	0	0	NA	9.28E-25	4.7421074	2	2	0.2578926	3	2	0.7421074	unphased	2.286293944	1.143146972	2	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214210805	6	164465133	T	C	-	-	-	-	-	-	36	0	0	70	16	22.85714286	0	0	NA	0	0	NA	2.93E-22	4.7421074	2	2	0.2578926	3	2	0.7421074	unphased	1.665728445	0.956157149	1.7421074	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214210870	6	165208879	G	C	-	-	-	-	-	-	23	0	0	69	8	11.5942029	0	0	NA	0	0	NA	2.49E-09	4.7421074	2	2	0.2578926	3	2	0.7421074	unphased	0.844934718	1.138561236	0.7421074	0	0.99625	0.00375	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214212793	7	24708605	G	C	MPP6	CCDS5388.1	r.?	-	-	intronic	31	0	0	51	5	9.803921569	189	1	0.529100529	160	9	5.625	6.06E-06	1.755712721	1	0	0.244287279	2	0	0.755712721	unphased	0.421683065	0.55799387	0.755712721	0.02125	0.97875	0	2	1	1.49E-07	0.612240666	YES	1_1	somatic	custom.pulldown.HiSeq
1352322	PD9768b	1214212913	7	26945808	T	C	SKAP2	ENST00000432747	r.?	-	-	intronic	28	0	0	54	22	40.74074074	0	0	NA	0	0	NA	1.60E-36	1.755712721	1	0	0.244287279	2	0	0.755712721	unphased	1.752327405	0.998071828	1.755712721	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214213534	7	39200457	T	C	POU6F2	CCDS34620.2	r.?	-	-	intronic	38	0	0	42	11	26.19047619	0	0	NA	0	0	NA	1.81E-16	1.755712721	1	0	0.244287279	2	0	0.755712721	unphased	1.126496189	1.126496189	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214213797	7	44547007	T	C	-	-	-	-	-	-	32	0	0	51	19	37.25490196	0	0	NA	0	0	NA	7.94E-31	1.755712721	1	0	0.244287279	2	0	0.755712721	unphased	1.602395648	0.912675308	1.755712721	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214214047	7	49291779	G	C	-	-	-	-	-	-	33	0	0	45	17	37.77777778	0	0	NA	0	0	NA	7.37E-28	1.755712721	1	0	0.244287279	2	0	0.755712721	unphased	1.624885412	0.925484786	1.755712721	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214214532	7	56705652	T	C	-	-	-	-	-	-	35	0	0	73	10	13.69863014	0	0	NA	0	0	NA	4.56E-12	4	2	2	1	NA	NA	NA	unphased	0.896637609	0.896637609	1	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214219140	7	67699276	T	C	-	-	-	-	-	-	37	0	0	74	21	28.37837838	0	0	NA	0	0	NA	5.60E-31	4	2	2	1	NA	NA	NA	unphased	1.857493857	0.928746929	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214219344	7	69427327	G	C	AUTS2	CCDS5539.1	r.?	-	-	intronic	35	0	0	79	12	15.18987342	0	0	NA	0	0	NA	9.17E-15	4	2	2	1	NA	NA	NA	unphased	0.99424626	0.99424626	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214220150	7	78270688	T	C	MAGI2	CCDS5594.1	r.?	-	-	intronic	29	0	0	80	29	36.25	0	0	NA	0	0	NA	7.59E-46	3	2	1	1	NA	NA	NA	unphased	2.010227273	1.005113636	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214220259	7	79891692	A	C	-	-	-	-	-	-	41	0	0	74	12	16.21621622	0	0	NA	0	0	NA	4.02E-15	3	2	1	1	NA	NA	NA	unphased	0.899262899	0.899262899	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214220386	7	82145827	T	C	-	-	-	-	-	-	29	0	0	57	23	40.35087719	0	0	NA	0	0	NA	5.38E-38	3	2	1	1	NA	NA	NA	unphased	2.237639553	1.118819777	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214220717	7	88278931	A	C	-	-	-	-	-	-	36	0	0	56	27	48.21428571	0	0	NA	0	0	NA	4.78E-47	3	2	1	1	NA	NA	NA	unphased	2.673701299	1.336850649	2	0	0.995	0.005	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214220736	7	88774289	G	C	ZNF804B	CCDS5613.1	r.?	-	-	intronic	31	0	0	50	7	14	0	0	NA	0	0	NA	6.46E-09	3	2	1	1	NA	NA	NA	unphased	0.776363636	0.776363636	1	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214220794	7	90061722	G	C	-	-	-	-	-	-	34	0	0	70	8	11.42857143	0	0	NA	0	0	NA	2.80E-09	3	2	1	1	NA	NA	NA	unphased	0.633766234	0.633766234	1	0.01875	0.98125	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214220857	7	91069990	A	C	-	-	-	-	-	-	37	0	0	58	19	32.75862069	0	0	NA	0	0	NA	1.50E-29	3	2	1	1	NA	NA	NA	unphased	1.81661442	0.90830721	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214221173	7	96438012	T	C	-	-	-	-	-	-	30	0	0	61	21	34.42622951	0	0	NA	0	0	NA	4.80E-33	3	2	1	1	NA	NA	NA	unphased	1.909090909	0.954545455	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214221194	7	96693284	T	C	-	-	-	-	-	-	38	0	0	63	14	22.22222222	0	0	NA	0	0	NA	1.81E-19	3	2	1	1	NA	NA	NA	unphased	1.232323232	1.232323232	1	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214222201	7	109300551	T	C	-	-	-	-	-	-	45	0	0	57	13	22.80701754	0	0	NA	0	0	NA	2.44E-18	3	2	1	1	NA	NA	NA	unphased	1.264752791	1.264752791	1	0	0.99625	0.00375	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214222263	7	110579811	T	C	IMMP2L	CCDS5753.1	r.?	-	-	intronic	21	0	0	64	22	34.375	0	0	NA	0	0	NA	1.57E-34	3	2	1	1	NA	NA	NA	unphased	1.90625	0.953125	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214222450	7	114073494	A	C	FOXP2	CCDS43635.1	r.?	-	-	intronic	25	0	0	66	18	27.27272727	0	0	NA	0	0	NA	2.08E-26	3	2	1	1	NA	NA	NA	unphased	1.512396694	0.756198347	2	0.005	0.995	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214222463	7	114402569	G	C	-	-	-	-	-	-	36	0	0	64	11	17.1875	0	0	NA	0	0	NA	2.85E-14	3	2	1	1	NA	NA	NA	unphased	0.953125	0.953125	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214222532	7	115569711	A	C	-	-	-	-	-	-	32	0	0	51	4	7.843137255	0	0	NA	0	0	NA	0.000129466	3	2	1	1	NA	NA	NA	unphased	0.434937611	0.434937611	1	0.05125	0.94875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214222634	7	117277047	T	C	CFTR	CCDS5773.1	r.?	-	-	intronic	30	0	0	54	6	11.11111111	0	0	NA	0	0	NA	3.29E-07	3	2	1	1	NA	NA	NA	unphased	0.616161616	0.616161616	1	0.01	0.99	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214222678	7	118032691	T	C	-	-	-	-	-	-	40	0	0	68	11	16.17647059	0	0	NA	0	0	NA	5.76E-14	3	2	1	1	NA	NA	NA	unphased	0.897058824	0.897058824	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214222977	7	123194743	T	C	NDUFA5	CCDS5788.1	r.?	-	-	intronic	14	0	0	72	27	37.5	0	0	NA	0	0	NA	2.82E-43	3	2	1	1	NA	NA	NA	unphased	2.079545455	1.039772727	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214223070	7	124854820	T	C	-	-	-	-	-	-	46	0	0	54	20	37.03703704	0	0	NA	0	0	NA	2.61E-32	3	2	1	1	NA	NA	NA	unphased	2.053872054	1.026936027	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214223071	7	124862131	T	C	-	-	-	-	-	-	25	0	0	47	7	14.89361702	0	0	NA	0	0	NA	4.12E-09	3	2	1	1	NA	NA	NA	unphased	0.825918762	0.825918762	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214223110	7	125462047	G	C	-	-	-	-	-	-	26	0	0	71	9	12.67605634	0	0	NA	0	0	NA	1.10E-10	3	2	1	1	NA	NA	NA	unphased	0.702944942	0.702944942	1	0.00375	0.99625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214223179	7	126785159	T	C	GRM8	CCDS5794.1	r.?	-	-	intronic	31	0	0	66	24	36.36363636	0	0	NA	0	0	NA	3.04E-38	3	2	1	1	NA	NA	NA	unphased	2.016528926	1.008264463	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214223702	7	134158362	G	C	-	-	-	-	-	-	28	0	0	59	20	33.89830508	0	0	NA	0	0	NA	2.21E-31	3	2	1	1	NA	NA	NA	unphased	1.8798151	0.93990755	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214223745	7	135001442	T	C	-	-	-	-	-	-	13	0	0	48	11	22.91666667	0	0	NA	0	0	NA	9.31E-16	3	2	1	1	NA	NA	NA	unphased	1.270833333	1.270833333	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214223809	7	135876910	G	C	-	-	-	-	-	-	20	0	0	55	6	10.90909091	1	0	0	0	0	NA	3.67E-07	3	2	1	1	NA	NA	NA	unphased	0.604958678	0.604958678	1	0.0175	0.9825	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214223833	7	136393113	G	C	-	-	-	-	-	-	29	0	0	74	35	47.2972973	0	0	NA	0	0	NA	3.78E-60	3	2	1	1	NA	NA	NA	unphased	2.622850123	1.311425061	2	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214223964	7	138437912	G	C	ATP6V0A4	CCDS5849.1	r.?	-	-	intronic	24	0	0	68	29	42.64705882	0	0	NA	0	0	NA	2.12E-48	3	2	1	1	NA	NA	NA	unphased	2.364973262	1.182486631	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214224001	7	138868268	A	C	TTC26	CCDS5852.1	r.?	-	-	intronic	25	0	0	73	14	19.17808219	0	0	NA	0	0	NA	1.71E-18	3	2	1	1	NA	NA	NA	unphased	1.063511831	1.063511831	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214224073	7	139896429	G	C	-	-	-	-	-	-	16	0	0	77	9	11.68831169	0	0	NA	0	0	NA	2.32E-10	3	2	1	1	NA	NA	NA	unphased	0.648170012	0.648170012	1	0.005	0.995	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214224167	7	141226480	T	C	-	-	-	-	-	-	33	0	0	46	14	30.43478261	0	0	NA	0	0	NA	1.26E-21	3	2	1	1	NA	NA	NA	unphased	1.687747036	0.843873518	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214224677	7	146398181	T	C	CNTNAP2	CCDS5889.1	r.?	-	-	intronic	31	0	0	63	17	26.98412698	70	0	0	90	35	38.88888889	6.22E-25	3	2	1	1	NA	NA	NA	unphased	1.496392496	0.748196248	2	0.005	0.995	0	2	1	2.52E-56	1	YES	1_1	somatic	custom.pulldown.HiSeq
1352322	PD9768b	1214224678	7	146406378	T	C	CNTNAP2	CCDS5889.1	r.?	-	-	intronic	40	0	0	54	21	38.88888889	0	0	NA	0	0	NA	2.12E-34	3	2	1	1	NA	NA	NA	unphased	2.156565657	1.078282828	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214224918	7	149790254	A	C	-	-	-	-	-	-	35	0	0	62	26	41.93548387	0	0	NA	0	0	NA	2.63E-43	3	2	1	1	NA	NA	NA	unphased	2.325513196	1.162756598	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214225209	7	152013987	G	C	BAGE3	CCDS5931.1	r.?	-	-	intronic	37	0	0	70	12	17.14285714	0	0	NA	0	0	NA	1.99E-15	3	2	1	1	NA	NA	NA	unphased	0.950649351	0.950649351	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214225542	7	154599965	T	C	DPP6	ENST00000404039	r.?	-	-	intronic	32	0	0	61	9	14.75409836	0	0	NA	0	0	NA	2.68E-11	3	2	1	1	NA	NA	NA	unphased	0.818181818	0.818181818	1	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214225603	7	155148519	G	C	BLACE	ENST00000378120	r.?	-	-	downstream	15	0	0	65	26	40	0	0	NA	0	0	NA	1.24E-42	3	2	1	1	NA	NA	NA	unphased	2.218181818	1.109090909	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214226345	8	3602887	G	C	CSMD1	ENST00000318252	r.?	-	-	intronic	41	0	0	47	12	25.53191489	0	0	NA	0	0	NA	1.09E-17	0.749246041	0	0	0.250753959	1	0	0.749246041	unphased	0.84120015	1.122728855	0.749246041	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214226746	8	9481681	T	C	TNKS	CCDS5974.1	r.?	-	-	intronic	27	0	0	34	4	11.76470588	0	0	NA	0	0	NA	2.57E-05	1.721104505	1	0	0.278895495	2	0	0.721104505	unphased	0.501948124	0.696082357	0.721104505	0.0025	0.99625	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214226776	8	10305992	G	C	-	-	-	-	-	-	30	0	0	53	13	24.52830189	0	0	NA	0	0	NA	8.53E-19	1.721104505	1	0	0.278895495	2	0	0.721104505	unphased	1.046514484	1.046514484	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214227534	8	23439697	A	C	-	-	-	-	-	-	28	0	0	45	7	15.55555556	0	0	NA	0	0	NA	3.00E-09	1.721104505	1	0	0.278895495	2	0	0.721104505	unphased	0.663686963	0.920375561	0.721104505	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214227535	8	23454531	G	C	-	-	-	-	-	-	32	0	0	60	5	8.333333333	0	0	NA	0	0	NA	1.36E-05	1.721104505	1	0	0.278895495	2	0	0.721104505	unphased	0.355546588	0.493058336	0.721104505	0.0425	0.9575	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214227765	8	27255764	T	C	PTK2B	CCDS6057.1	r.?	-	-	intronic	24	0	0	45	16	35.55555556	0	0	NA	0	0	NA	8.61E-26	1.721104505	1	0	0.278895495	2	0	0.721104505	unphased	1.516998774	0.88141003	1.721104505	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214228188	8	34436421	T	C	-	-	-	-	-	-	23	0	0	46	12	26.08695652	0	0	NA	0	0	NA	8.12E-18	1.721104505	1	0	0.278895495	2	0	0.721104505	unphased	1.113015405	1.113015405	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214228275	8	36828660	G	C	-	-	-	-	-	-	29	0	0	95	37	38.94736842	0	0	NA	0	0	NA	1.75E-59	5.281616629	3	2	0.718383371	4	2	0.281616629	unphased	3.048438247	1.016146082	3	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214228404	8	37875516	T	C	-	-	-	-	-	-	36	0	0	88	21	23.86363636	0	0	NA	0	0	NA	3.45E-29	5.281616629	3	2	0.718383371	4	2	0.281616629	unphased	1.867823803	0.933911901	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214228425	8	38025584	A	C	LSM1	CCDS6103.1	r.?	-	-	intronic	10	0	0	86	11	12.79069767	0	0	NA	0	0	NA	8.47E-13	5.281616629	3	2	0.718383371	4	2	0.281616629	unphased	1.001137011	1.001137011	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214228595	8	39468306	T	C	ADAM18	CCDS6113.1	r.?	-	-	intronic	43	0	0	85	11	12.94117647	0	0	NA	0	0	NA	7.42E-13	5.281616629	3	2	0.718383371	4	2	0.281616629	unphased	1.012915093	1.012915093	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214228714	8	40575310	T	C	ZMAT4	CCDS34885.1	r.?	-	-	intronic	31	0	0	77	20	25.97402597	0	0	NA	0	0	NA	1.07E-28	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	1.851113673	0.925556836	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214228869	8	42211891	G	C	POLB	CCDS6129.1	r.?	-	-	intronic	30	0	0	67	21	31.34328358	0	0	NA	0	0	NA	4.96E-32	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	2.23376926	1.11688463	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214228894	8	42444320	T	C	-	-	-	-	-	-	20	0	0	64	20	31.25	0	0	NA	0	0	NA	1.52E-30	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	2.227121137	1.113560569	2	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214229901	8	50491464	G	C	-	-	-	-	-	-	28	0	0	78	14	17.94871795	0	0	NA	0	0	NA	4.63E-18	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	1.279167012	1.279167012	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214229952	8	50896084	G	C	-	-	-	-	-	-	28	0	0	72	20	27.77777778	0	0	NA	0	0	NA	2.32E-29	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	1.979663233	0.989831617	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214229965	8	51109375	A	C	-	-	-	-	-	-	33	0	0	71	21	29.57746479	0	0	NA	0	0	NA	2.05E-31	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	2.107923105	1.053961552	2	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214230622	8	58434465	G	C	-	-	-	-	-	-	36	0	0	86	16	18.60465116	0	0	NA	0	0	NA	1.06E-20	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	1.325913979	1.325913979	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214230625	8	58443753	T	C	-	-	-	-	-	-	33	0	0	92	25	27.17391304	1	0	0	0	0	NA	4.74E-36	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	1.936627076	0.968313538	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214230994	8	63081431	T	C	-	-	-	-	-	-	46	0	0	87	14	16.09195402	0	0	NA	0	0	NA	2.35E-17	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	1.14683939	1.14683939	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214231136	8	65120481	G	C	-	-	-	-	-	-	40	0	0	83	14	16.86746988	0	0	NA	0	0	NA	1.17E-17	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	1.202108758	1.202108758	1	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214231174	8	65545130	A	C	CYP7B1	CCDS6180.1	r.?	-	-	intronic	38	0	0	93	13	13.97849462	0	0	NA	0	0	NA	2.18E-15	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	0.996217627	0.996217627	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214231176	8	65652311	G	C	CYP7B1	CCDS6180.1	r.?	-	-	intronic	30	0	0	90	7	7.777777778	0	0	NA	0	0	NA	4.06E-07	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	0.554305705	0.953507913	0.581333094	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214231490	8	69211870	T	C	-	-	-	-	-	-	38	0	0	76	20	26.31578947	0	0	NA	0	0	NA	7.96E-29	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	1.875470431	0.937735216	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214232139	8	75716887	G	C	-	-	-	-	-	-	42	0	0	73	10	13.69863014	0	0	NA	0	0	NA	4.56E-12	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	0.976272279	0.976272279	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214232441	8	79299896	G	C	-	-	-	-	-	-	32	0	0	94	9	9.574468085	87	0	0	107	8	7.476635514	1.42E-09	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	0.682352008	1.173771139	0.581333094	0.00125	0.99875	0	2	1	8.20E-08	1	YES	1_1	somatic	custom.pulldown.HiSeq
1352322	PD9768b	1214232713	8	82764113	A	C	-	-	-	-	-	-	30	0	0	61	5	8.196721311	0	0	NA	0	0	NA	1.47E-05	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	0.584162921	1.004867824	0.581333094	0.0025	0.99625	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214232776	8	83655844	T	C	-	-	-	-	-	-	35	0	0	92	16	17.39130435	0	0	NA	0	0	NA	3.36E-20	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	1.239441329	1.239441329	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214232926	8	85276191	G	C	-	-	-	-	-	-	35	0	0	71	18	25.35211268	0	0	NA	0	0	NA	9.22E-26	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	1.806791233	0.903395616	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214233316	8	88543091	T	C	-	-	-	-	-	-	41	0	0	66	11	16.66666667	0	0	NA	0	0	NA	4.07E-14	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	1.18779794	1.18779794	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214233358	8	89005900	G	C	-	-	-	-	-	-	39	0	0	86	21	24.41860465	0	0	NA	0	0	NA	2.01E-29	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	1.740262098	1.10050318	1.581333094	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214233590	8	92000924	T	C	-	-	-	-	-	-	39	0	0	79	12	15.18987342	0	0	NA	0	0	NA	9.17E-15	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	1.082550021	1.082550021	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214233666	8	93049344	G	C	RUNX1T1	CCDS47891.1	r.?	-	-	intronic	33	0	0	87	15	17.24137931	0	0	NA	0	0	NA	5.73E-19	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	1.22875649	1.22875649	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214233735	8	93945597	A	C	C8orf83	ENST00000378861	r.?	-	-	intronic	33	0	0	96	11	11.45833333	0	0	NA	0	0	NA	2.92E-12	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	0.816611084	0.816611084	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214233947	8	96067022	G	C	C8orf38	CCDS6266.2	r.?	-	-	intronic	17	0	0	67	7	10.44776119	0	0	NA	0	0	NA	5.23E-08	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	0.744589753	0.744589753	1	0.0075	0.9925	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214233966	8	96157148	G	C	PLEKHF2	CCDS6267.1	r.?	-	-	intronic	27	0	0	80	11	13.75	0	0	NA	0	0	NA	3.73E-13	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	0.9799333	0.9799333	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214234390	8	100560832	A	C	VPS13B	CCDS6280.1	r.?	-	-	intronic	37	0	0	62	11	17.74193548	0	0	NA	0	0	NA	1.96E-14	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	1.264430065	1.264430065	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214234402	8	100735505	T	C	VPS13B	CCDS6280.1	r.?	-	-	intronic	46	0	0	85	16	18.82352941	0	0	NA	0	0	NA	8.67E-21	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	1.341512967	1.341512967	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214234408	8	100818863	G	C	VPS13B	CCDS6280.1	r.?	-	-	intronic	38	0	0	88	26	29.54545455	0	0	NA	0	0	NA	1.61E-38	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	2.105641803	1.052820901	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214234606	8	102484249	T	C	-	-	-	-	-	-	29	0	0	88	11	12.5	0	0	NA	0	0	NA	1.10E-12	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	0.890848455	0.890848455	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214234986	8	106251227	G	C	-	-	-	-	-	-	26	0	0	94	13	13.82978723	0	0	NA	0	0	NA	2.52E-15	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	0.985619567	0.985619567	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214235003	8	106485507	A	C	ZFPM2	CCDS47908.1	r.?	-	-	intronic	33	0	0	88	19	21.59090909	0	0	NA	0	0	NA	1.22E-25	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	1.53873824	0.973063959	1.581333094	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214235069	8	107314157	T	C	OXR1	CCDS47909.1	r.?	-	-	intronic	40	0	0	91	26	28.57142857	0	0	NA	0	0	NA	4.43E-38	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	2.03622504	1.01811252	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214235241	8	109331948	T	C	-	-	-	-	-	-	31	0	0	80	12	15	0	0	NA	0	0	NA	1.07E-14	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	1.069018146	1.069018146	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214235373	8	110995821	G	C	-	-	-	-	-	-	28	0	0	76	16	21.05263158	0	0	NA	0	0	NA	1.25E-21	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	1.500376345	1.500376345	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214235387	8	111201046	T	C	-	-	-	-	-	-	28	0	0	62	5	8.064516129	0	0	NA	0	0	NA	1.60E-05	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	0.574740939	0.988660279	0.581333094	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214235433	8	111732249	G	C	-	-	-	-	-	-	32	0	0	68	5	7.352941176	0	0	NA	0	0	NA	2.51E-05	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	0.524028503	0.901425548	0.581333094	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214235482	8	112346114	G	C	-	-	-	-	-	-	36	0	0	73	11	15.06849315	0	0	NA	0	0	NA	1.31E-13	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	1.073899507	1.073899507	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214235590	8	113615179	G	C	CSMD3	CCDS6315.1	r.?	-	-	intronic	26	0	0	81	8	9.87654321	0	0	NA	0	0	NA	9.08E-09	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	0.703880261	1.210803699	0.581333094	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214235648	8	114375444	T	C	CSMD3	CCDS6315.1	r.?	-	-	intronic	27	0	0	58	6	10.34482759	0	0	NA	0	0	NA	5.06E-07	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	0.737253894	0.737253894	1	0.01125	0.98875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214236052	8	119290250	T	C	SAMD12	CCDS47913.1	r.?	-	-	intronic	35	0	0	82	12	14.63414634	0	0	NA	0	0	NA	1.46E-14	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	1.042944533	1.042944533	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214236523	8	124162950	G	C	WDR67	CCDS6338.1	r.?	-	-	intronic	39	0	0	82	23	28.04878049	0	0	NA	0	0	NA	1.19E-33	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	1.998977021	0.99948851	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214236662	8	125526885	T	C	TATDN1	CCDS6351.1	r.?	-	-	intronic	23	0	0	79	17	21.51898734	0	0	NA	0	0	NA	4.55E-23	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	1.53361253	0.969822573	1.581333094	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214236690	8	125813827	T	C	ENSG00000235517	ENST00000422573	r.?	-	-	intronic	39	0	0	81	5	6.172839506	0	0	NA	0	0	NA	5.84E-05	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	0.439925163	0.756752312	0.581333094	0.00375	0.99625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214237085	8	129612615	G	C	-	-	-	-	-	-	32	0	0	68	21	30.88235294	0	0	NA	0	0	NA	7.15E-32	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	2.200919712	1.100459856	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214237113	8	130110206	G	C	-	-	-	-	-	-	39	0	0	73	15	20.54794521	0	0	NA	0	0	NA	3.38E-20	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	1.464408419	1.464408419	1	0.00125	0.9975	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214237621	8	136385935	A	C	-	-	-	-	-	-	36	0	0	66	7	10.60606061	0	0	NA	0	0	NA	4.70E-08	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	0.755871416	0.755871416	1	0.005	0.995	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214237657	8	136860295	A	C	-	-	-	-	-	-	34	0	0	74	18	24.32432432	0	0	NA	0	0	NA	2.13E-25	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	1.733542939	1.096254133	1.581333094	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214237861	8	138968131	G	C	-	-	-	-	-	-	36	0	0	88	19	21.59090909	0	0	NA	0	0	NA	1.22E-25	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	1.53873824	0.973063959	1.581333094	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214237991	8	140160518	A	C	-	-	-	-	-	-	29	0	0	87	21	24.13793103	0	0	NA	0	0	NA	2.64E-29	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	1.720259085	1.087853718	1.581333094	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214238051	8	140910919	G	C	TRAPPC9	CCDS34946.1	r.?	-	-	intronic	30	0	0	68	15	22.05882353	0	0	NA	0	0	NA	1.06E-20	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	1.572085509	0.994152032	1.581333094	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214238359	8	144017444	G	C	-	-	-	-	-	-	16	0	0	74	17	22.97297297	0	0	NA	0	0	NA	1.34E-23	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	1.637234998	1.035351125	1.581333094	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214238589	8	146262440	G	C	-	-	-	-	-	-	21	0	0	83	31	37.34939759	0	0	NA	0	0	NA	2.15E-49	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214238713	9	929936	A	C	DMRT1	CCDS6442.1	r.?	-	-	intronic	38	0	0	58	13	22.4137931	0	0	NA	0	0	NA	3.12E-18	3	2	1	1	NA	NA	NA	unphased	1.242946708	1.242946708	1	0	0.99625	0.00375	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214239293	9	9437365	T	C	PTPRD	CCDS43786.1	r.?	-	-	intronic	33	0	0	65	7	10.76923077	0	0	NA	0	0	NA	4.22E-08	3	2	1	1	NA	NA	NA	unphased	0.597202797	0.597202797	1	0.015	0.985	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214239407	9	11272107	T	C	-	-	-	-	-	-	36	0	0	42	12	28.57142857	0	0	NA	0	0	NA	2.35E-18	3	2	1	1	NA	NA	NA	unphased	1.584415584	1.584415584	1	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214239704	9	15658908	G	C	C9orf93	CCDS6481.1	r.?	-	-	intronic	32	0	0	62	6	9.677419355	0	0	NA	0	0	NA	7.56E-07	3	2	1	1	NA	NA	NA	unphased	0.536656891	0.536656891	1	0.03875	0.96125	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214240012	9	20899846	T	C	KIAA1797	CCDS34993.1	r.?	-	-	intronic	33	0	0	60	22	36.66666667	0	0	NA	0	0	NA	2.81E-35	3	2	1	1	NA	NA	NA	unphased	2.033333333	1.016666667	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214240015	9	20909685	T	C	KIAA1797	CCDS34993.1	r.?	-	-	intronic	35	0	0	67	14	20.89552239	0	0	NA	0	0	NA	4.66E-19	3	2	1	1	NA	NA	NA	unphased	1.158751696	1.158751696	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214240111	9	22616072	T	C	-	-	-	-	-	-	40	0	0	55	17	30.90909091	0	0	NA	0	0	NA	4.35E-26	3	2	1	1	NA	NA	NA	unphased	1.714049587	0.857024793	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214240307	9	26672314	A	C	-	-	-	-	-	-	29	0	0	55	4	7.272727273	0	0	NA	0	0	NA	0.000173903	3	2	1	1	NA	NA	NA	unphased	0.403305785	0.403305785	1	0.10625	0.89375	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214240389	9	28022182	T	C	LINGO2	CCDS6524.1	r.?	-	-	intronic	32	0	0	69	14	20.28985507	0	0	NA	0	0	NA	7.30E-19	3	2	1	1	NA	NA	NA	unphased	1.12516469	1.12516469	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214240516	9	30023622	T	C	-	-	-	-	-	-	44	0	0	57	6	10.52631579	0	0	NA	0	0	NA	4.56E-07	3	2	1	1	NA	NA	NA	unphased	0.583732057	0.583732057	1	0.01125	0.98875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214240684	9	32421932	G	C	ACO1	CCDS6525.1	r.?	-	-	intronic	30	0	0	66	12	18.18181818	0	0	NA	0	0	NA	9.36E-16	3	2	1	1	NA	NA	NA	unphased	1.008264463	1.008264463	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214241321	9	40612717	A	C	-	-	-	-	-	-	35	0	0	52	5	9.615384615	0	0	NA	0	0	NA	6.68E-06	3	2	1	1	NA	NA	NA	unphased	0.533216783	0.533216783	1	0.02625	0.97375	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214243589	9	68380828	A	C	-	-	-	-	-	-	17	0	0	89	29	32.58426966	0	0	NA	0	0	NA	3.13E-44	2.697349171	1	1	0.302650829	2	1	0.697349171	unphased	1.708329301	1.006468987	1.697349171	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214246848	9	73704796	T	C	TRPM3	CCDS43835.1	r.?	-	-	intronic	25	0	0	71	17	23.94366197	0	0	NA	0	0	NA	6.12E-24	2.697349171	1	1	0.302650829	2	1	0.697349171	unphased	1.2553192	1.2553192	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214246920	9	74583187	T	C	C9orf85	CCDS6639.1	r.?	-	-	intronic	33	0	0	71	8	11.26760563	0	0	NA	0	0	NA	3.14E-09	2.697349171	1	1	0.302650829	2	1	0.697349171	unphased	0.590738447	0.847120025	0.697349171	0.00375	0.99625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214247349	9	81086413	T	C	-	-	-	-	-	-	31	0	0	58	18	31.03448276	0	0	NA	0	0	NA	1.42E-27	2.697349171	1	1	0.302650829	2	1	0.697349171	unphased	1.627077015	0.958598881	1.697349171	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214247374	9	81690741	G	C	-	-	-	-	-	-	11	0	0	34	9	26.47058824	0	0	NA	0	0	NA	9.15E-14	2.697349171	1	1	0.302650829	2	1	0.697349171	unphased	1.387800984	1.387800984	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214248343	9	96785148	G	C	-	-	-	-	-	-	31	0	0	66	5	7.575757576	0	0	NA	0	0	NA	2.17E-05	3.236559885	2	1	0.763440115	3	1	0.236559885	unphased	0.438031396	0.438031396	1	0.09875	0.90125	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214248972	9	108654306	T	C	-	-	-	-	-	-	36	0	0	57	11	19.29824561	0	0	NA	0	0	NA	7.29E-15	2.370148363	1	1	0.629851637	2	1	0.370148363	unphased	0.948625123	0.948625123	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214248991	9	108944653	A	C	-	-	-	-	-	-	28	0	0	41	11	26.82926829	0	0	NA	0	0	NA	1.34E-16	2.370148363	1	1	0.629851637	2	1	0.370148363	unphased	1.318820293	1.318820293	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214249410	9	116535233	A	C	-	-	-	-	-	-	26	0	0	74	16	21.62162162	0	0	NA	0	0	NA	7.81E-22	2.370148363	1	1	0.629851637	2	1	0.370148363	unphased	1.062833061	1.062833061	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214249584	9	119235894	A	C	ASTN2	CCDS48009.1	r.?	-	-	intronic	18	0	0	69	24	34.7826087	0	0	NA	0	0	NA	1.11E-37	2.370148363	1	1	0.629851637	2	1	0.370148363	unphased	1.709774925	1.247875756	1.370148363	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214249832	9	123317890	T	C	CDK5RAP2	CCDS6823.1	r.?	-	-	intronic	32	0	0	75	21	28	0	0	NA	0	0	NA	7.75E-31	2.370148363	1	1	0.629851637	2	1	0.370148363	unphased	1.376368814	1.376368814	1	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214250057	9	126416083	T	C	DENND1A	CCDS35133.1	r.?	-	-	intronic	37	0	0	79	20	25.3164557	0	0	NA	0	0	NA	1.91E-28	2.370148363	1	1	0.629851637	2	1	0.370148363	unphased	1.244456433	1.244456433	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214250367	9	129775893	G	C	RALGPS1	CCDS35143.1	r.?	-	-	intronic	18	0	0	56	11	19.64285714	0	0	NA	0	0	NA	5.91E-15	2.370148363	1	1	0.629851637	2	1	0.370148363	unphased	0.965564857	0.965564857	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214251195	X	4044651	T	C	-	-	-	-	-	-	34	0	0	64	12	18.75	0	0	NA	0	0	NA	6.30E-16	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214251300	X	5735667	G	C	-	-	-	-	-	-	29	0	0	47	6	12.76595745	0	0	NA	0	0	NA	1.41E-07	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	0.615026211	0.615026211	1	0.00875	0.99125	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214251642	X	11621021	G	C	ARHGAP6	CCDS14140.1	r.?	-	-	intronic	28	0	0	61	10	16.39344262	0	0	NA	0	0	NA	6.98E-13	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	0.789787758	0.789787758	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214251678	X	12514922	G	C	FRMPD4	CCDS35201.1	r.?	-	-	intronic	30	0	0	54	6	11.11111111	2	0	0	0	0	NA	3.29E-07	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	0.535300591	0.535300591	1	0.035	0.965	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214251762	X	14219591	G	C	-	-	-	-	-	-	39	0	0	60	13	21.66666667	0	0	NA	0	0	NA	5.07E-18	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	1.043836153	1.043836153	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214251895	X	16879461	G	C	RBBP7	CCDS14179.1	r.?	-	-	intronic	20	0	0	58	14	24.13793103	0	0	NA	0	0	NA	5.04E-20	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	1.162894388	1.162894388	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214251997	X	18985872	G	C	PHKA2	CCDS14190.1	r.?	-	-	intronic	38	0	0	62	9	14.51612903	0	0	NA	0	0	NA	3.12E-11	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	0.699344321	0.699344321	1	0.0075	0.9925	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214252069	X	20500442	A	C	-	-	-	-	-	-	29	0	0	62	11	17.74193548	0	0	NA	0	0	NA	1.96E-14	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	0.85475417	0.85475417	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214252085	X	21388108	A	C	CNKSR2	CCDS14198.1	r.?	-	-	upstream	36	0	0	58	5	8.620689655	0	0	NA	0	0	NA	1.15E-05	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	0.415319424	1.525503171	0.272250778	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214252163	X	23444395	G	C	-	-	-	-	-	-	21	0	0	78	21	26.92307692	0	0	NA	0	0	NA	1.99E-30	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	1.29707451	1.29707451	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214252412	X	29912337	A	C	IL1RAPL1	CCDS14218.1	r.?	-	-	intronic	36	0	0	52	13	25	0	0	NA	0	0	NA	6.47E-19	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	1.204426331	1.204426331	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214252656	X	36284859	G	C	CXorf30	ENST00000378653	r.?	-	-	intronic	9	0	0	64	17	26.5625	0	0	NA	0	0	NA	8.43E-25	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	1.279702976	1.279702976	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214252708	X	37919071	T	C	SYTL5	CCDS14244.1	r.?	-	-	intronic	43	0	0	62	13	20.96774194	0	0	NA	0	0	NA	8.08E-18	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	1.010164019	1.010164019	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214252709	X	37921049	T	C	SYTL5	CCDS14244.1	r.?	-	-	intronic	29	0	0	61	11	18.03278689	0	0	NA	0	0	NA	1.62E-14	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	0.868766534	0.868766534	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214252726	X	38372429	T	C	ENSG00000250349	ENST00000465127	r.?	-	-	intronic	41	0	0	54	8	14.81481481	0	0	NA	0	0	NA	3.31E-10	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	0.713734122	0.713734122	1	0.005	0.995	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214252770	X	39764365	G	C	-	-	-	-	-	-	9	0	0	41	9	21.95121951	0	0	NA	0	0	NA	5.92E-13	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	1.057545071	1.057545071	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214252798	X	40206867	T	C	-	-	-	-	-	-	38	0	0	51	12	23.52941176	0	0	NA	0	0	NA	3.24E-17	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	1.133577723	1.133577723	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214253031	X	44872276	A	C	KDM6A	CCDS14265.1	r.?	-	-	intronic	30	0	0	56	23	41.07142857	0	0	NA	0	0	NA	3.22E-38	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	1.978700401	1.55527545	1.272250778	0	0.98875	0.01125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214253211	X	48234019	G	C	-	-	-	-	-	-	14	0	0	40	8	20	0	0	NA	0	0	NA	2.61E-11	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	0.963541065	0.963541065	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214253338	X	50920837	G	C	-	-	-	-	-	-	30	0	0	53	9	16.98113208	0	0	NA	0	0	NA	7.10E-12	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	0.818100904	0.818100904	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214253539	X	55809447	T	C	-	-	-	-	-	-	27	0	0	62	12	19.35483871	0	0	NA	0	0	NA	4.19E-16	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	0.932459095	0.932459095	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214253544	X	55954490	T	C	-	-	-	-	-	-	37	0	0	57	19	33.33333333	0	0	NA	0	0	NA	1.01E-29	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	1.605901774	1.262252539	1.272250778	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214253569	X	56507493	G	C	-	-	-	-	-	-	28	0	0	55	13	23.63636364	0	0	NA	0	0	NA	1.46E-18	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	1.138730349	1.138730349	1	0.00125	0.9975	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214254371	X	65905928	G	C	-	-	-	-	-	-	29	0	0	42	9	21.42857143	0	0	NA	0	0	NA	7.51E-13	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	1.032365426	1.032365426	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214254416	X	67331349	G	C	OPHN1	CCDS14388.1	r.?	-	-	intronic	34	0	0	67	13	19.40298507	0	0	NA	0	0	NA	2.41E-17	2	1	1	1	NA	NA	NA	unphased	0.881953867	0.881953867	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214254591	X	70853719	T	C	-	-	-	-	-	-	17	0	0	44	11	25	0	0	NA	0	0	NA	3.22E-16	2	1	1	1	NA	NA	NA	unphased	1.136363636	1.136363636	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214254703	X	73586993	T	C	-	-	-	-	-	-	30	0	0	49	11	22.44897959	0	0	NA	0	0	NA	1.19E-15	2	1	1	1	NA	NA	NA	unphased	1.020408163	1.020408163	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214254712	X	73852808	T	C	-	-	-	-	-	-	31	0	0	54	14	25.92592593	0	0	NA	0	0	NA	1.64E-20	2	1	1	1	NA	NA	NA	unphased	1.178451178	1.178451178	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214254724	X	74216590	A	C	-	-	-	-	-	-	26	0	0	56	8	14.28571429	0	0	NA	0	0	NA	4.48E-10	2	1	1	1	NA	NA	NA	unphased	0.649350649	0.649350649	1	0.00875	0.99125	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214254758	X	74976141	G	C	-	-	-	-	-	-	27	0	0	57	12	21.05263158	0	0	NA	0	0	NA	1.40E-16	2	1	1	1	NA	NA	NA	unphased	0.956937799	0.956937799	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214254877	X	77954777	A	C	-	-	-	-	-	-	29	0	0	49	9	18.36734694	0	0	NA	0	0	NA	3.35E-12	2	1	1	1	NA	NA	NA	unphased	0.834879406	0.834879406	1	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214254901	X	78561887	T	C	-	-	-	-	-	-	31	0	0	50	14	28	0	0	NA	0	0	NA	4.84E-21	2	1	1	1	NA	NA	NA	unphased	1.272727273	1.272727273	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214254931	X	79514644	G	C	-	-	-	-	-	-	32	0	0	44	6	13.63636364	0	0	NA	0	0	NA	9.37E-08	2	1	1	1	NA	NA	NA	unphased	0.619834711	0.619834711	1	0.01375	0.98625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214255114	X	85341567	A	C	-	-	-	-	-	-	27	0	0	48	12	25	0	0	NA	0	0	NA	1.44E-17	2	1	1	1	NA	NA	NA	unphased	1.136363636	1.136363636	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214255358	X	90338108	G	C	-	-	-	-	-	-	18	0	0	54	7	12.96296296	0	0	NA	0	0	NA	1.13E-08	1.633981384	1	0	0.366018616	1	1	0.633981384	unphased	0.541778732	0.854565679	0.633981384	0.005	0.995	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214255402	X	91530696	G	C	PCDH11X	CCDS14461.1	r.?	-	-	intronic	17	0	0	48	10	20.83333333	0	0	NA	0	0	NA	5.37E-14	1.633981384	1	0	0.366018616	1	1	0.633981384	unphased	0.870715819	0.870715819	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214255433	X	92163521	T	C	-	-	-	-	-	-	35	0	0	47	9	19.14893617	0	0	NA	0	0	NA	2.24E-12	2	1	1	1	NA	NA	NA	unphased	0.87040619	0.87040619	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214255438	X	92316063	G	C	-	-	-	-	-	-	23	0	0	63	12	19.04761905	0	0	NA	0	0	NA	5.15E-16	2	1	1	1	NA	NA	NA	unphased	0.865800866	0.865800866	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214255686	X	98536437	G	C	-	-	-	-	-	-	33	0	0	50	6	12	0	0	NA	0	0	NA	2.06E-07	2	1	1	1	NA	NA	NA	unphased	0.545454545	0.545454545	1	0.03125	0.96875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214255971	X	106320534	T	C	RBM41	CCDS14526.1	r.?	-	-	intronic	17	0	0	48	7	14.58333333	0	0	NA	0	0	NA	4.81E-09	2	1	1	1	NA	NA	NA	unphased	0.662878788	0.662878788	1	0.00625	0.99375	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214256115	X	110356443	T	C	PAK3	CCDS48153.1	r.?	-	-	intronic	39	0	0	52	13	25	0	0	NA	0	0	NA	6.47E-19	2	1	1	1	NA	NA	NA	unphased	1.136363636	1.136363636	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214256292	X	115294222	G	C	-	-	-	-	-	-	31	0	0	61	6	9.836065574	0	0	NA	0	0	NA	6.85E-07	2	1	1	1	NA	NA	NA	unphased	0.44709389	0.44709389	1	0.14125	0.85875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214256320	X	115943584	A	C	-	-	-	-	-	-	22	0	0	40	10	25	0	0	NA	0	0	NA	7.22E-15	2	1	1	1	NA	NA	NA	unphased	1.136363636	1.136363636	1	0.0025	0.99625	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214256395	X	117562020	G	C	WDR44	CCDS14572.1	r.?	-	-	intronic	21	0	0	54	12	22.22222222	0	0	NA	0	0	NA	6.90E-17	2	1	1	1	NA	NA	NA	unphased	1.01010101	1.01010101	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214256619	X	122324055	T	C	GRIA3	ENST00000264357	r.?	-	-	intronic	21	0	0	41	8	19.51219512	0	0	NA	0	0	NA	3.22E-11	2	1	1	1	NA	NA	NA	unphased	0.88691796	0.88691796	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214256662	X	123426567	G	C	-	-	-	-	-	-	24	0	0	45	15	33.33333333	0	0	NA	0	0	NA	9.14E-24	2	1	1	1	NA	NA	NA	unphased	1.515151515	1.515151515	1	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214256710	X	124930243	A	C	-	-	-	-	-	-	33	0	0	47	15	31.91489362	0	0	NA	0	0	NA	1.97E-23	2	1	1	1	NA	NA	NA	unphased	1.450676983	1.450676983	1	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214256729	X	125247717	T	C	-	-	-	-	-	-	34	0	0	41	8	19.51219512	0	0	NA	0	0	NA	3.22E-11	2	1	1	1	NA	NA	NA	unphased	0.88691796	0.88691796	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214256810	X	127082485	T	C	-	-	-	-	-	-	31	0	0	55	11	20	0	0	NA	0	0	NA	4.77E-15	2	1	1	1	NA	NA	NA	unphased	0.909090909	0.909090909	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214256857	X	128197332	G	C	-	-	-	-	-	-	28	0	0	43	9	20.93023256	0	0	NA	0	0	NA	9.45E-13	2	1	1	1	NA	NA	NA	unphased	0.951374207	0.951374207	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214256931	X	129863471	T	C	ENOX2	CCDS14626.1	r.?	-	-	intronic	30	0	0	60	21	35	0	0	NA	0	0	NA	3.16E-33	2	1	1	1	NA	NA	NA	unphased	1.590909091	1.590909091	1	0	0.995	0.005	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214256935	X	129991565	T	C	ENOX2	CCDS14626.1	r.?	-	-	intronic	35	0	0	59	14	23.72881356	0	0	NA	0	0	NA	6.58E-20	2	1	1	1	NA	NA	NA	unphased	1.078582435	1.078582435	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214257212	X	137357745	T	C	-	-	-	-	-	-	42	0	0	44	5	11.36363636	0	0	NA	0	0	NA	2.88E-06	2	1	1	1	NA	NA	NA	unphased	0.516528926	0.516528926	1	0.03875	0.96125	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214257325	X	140380307	T	C	-	-	-	-	-	-	21	0	0	42	8	19.04761905	0	0	NA	0	0	NA	3.96E-11	2	1	1	1	NA	NA	NA	unphased	0.865800866	0.865800866	1	0.00375	0.99625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214257383	X	141610443	A	C	-	-	-	-	-	-	25	0	0	40	10	25	0	0	NA	0	0	NA	7.22E-15	2	1	1	1	NA	NA	NA	unphased	1.136363636	1.136363636	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214257414	X	142381651	G	C	-	-	-	-	-	-	33	0	0	43	8	18.60465116	0	0	NA	0	0	NA	4.85E-11	2	1	1	1	NA	NA	NA	unphased	0.845665962	0.845665962	1	0.00375	0.99625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214257518	X	145027840	T	C	-	-	-	-	-	-	37	0	0	62	14	22.58064516	0	0	NA	0	0	NA	1.42E-19	2	1	1	1	NA	NA	NA	unphased	1.026392962	1.026392962	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214257605	X	147123169	T	C	-	-	-	-	-	-	9	0	0	57	7	12.28070175	0	0	NA	0	0	NA	1.66E-08	2	1	1	1	NA	NA	NA	unphased	0.558213716	0.558213716	1	0.035	0.965	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214257852	X	154062037	A	C	F8	CCDS35457.1	r.?	-	-	downstream	26	0	0	55	12	21.81818182	0	0	NA	0	0	NA	8.78E-17	2	1	1	1	NA	NA	NA	unphased	0.991735537	0.991735537	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1213999086	1	6131230	T	G	KCNAB2	CCDS55.1	r.?	-	-	intronic	13	0	0	53	16	30.18867925	0	0	NA	0	0	NA	1.90E-24	2.087633076	2	0	0.912366924	2	1	0.087633076	unphased	1.398667961	1.398667961	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1213999633	1	15656986	A	G	FHAD1	CCDS44062.1	r.?	-	-	intronic	25	0	0	57	22	38.59649123	0	0	NA	0	0	NA	7.03E-36	2.087633076	2	0	0.912366924	2	1	0.087633076	unphased	1.788209257	0.935076441	1.912366924	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214000311	1	18504936	C	G	IGSF21	CCDS184.1	r.?	-	-	intronic	18	0	0	53	17	32.0754717	0	0	NA	0	0	NA	2.08E-26	4.399047721	2	2	0.600952279	3	2	0.399047721	unphased	2.227481859	0.928485848	2.399047721	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214000418	1	19873438	A	G	-	-	-	-	-	-	23	0	0	51	15	29.41176471	0	0	NA	0	0	NA	8.22E-23	2.076176848	2	0	0.923823152	2	1	0.076176848	unphased	1.359303351	1.359303351	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214001431	1	36114003	A	G	-	-	-	-	-	-	26	0	0	66	19	28.78787879	0	0	NA	0	0	NA	2.64E-28	3.641171102	2	1	0.358828898	2	2	0.641171102	unphased	1.780998293	0.890499146	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214002410	1	47561507	A	G	CYP4Z1	CCDS545.1	r.?	-	-	intronic	33	0	0	60	25	41.66666667	0	0	NA	0	0	NA	1.31E-41	3.641171102	2	1	0.358828898	2	2	0.641171102	unphased	2.577760687	1.288880343	2	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214002518	1	49069580	C	G	AGBL4	CCDS44137.1	r.?	-	-	intronic	18	0	0	48	12	25	0	0	NA	0	0	NA	1.44E-17	3.641171102	2	1	0.358828898	2	2	0.641171102	unphased	1.546656412	1.546656412	1	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214002562	1	50010940	C	G	AGBL4	CCDS44137.1	r.?	-	-	intronic	30	0	0	68	19	27.94117647	0	0	NA	0	0	NA	5.06E-28	3.641171102	2	1	0.358828898	2	2	0.641171102	unphased	1.72861599	0.864307995	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214002779	1	52867208	C	G	ORC1L	CCDS566.1	r.?	-	-	intronic	44	0	0	70	6	8.571428571	0	0	NA	0	0	NA	1.56E-06	3.641171102	2	1	0.358828898	2	2	0.641171102	unphased	0.530282198	0.827052555	0.641171102	0.00375	0.99625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214002808	1	53182452	T	G	-	-	-	-	-	-	34	0	0	74	26	35.13513514	0	0	NA	0	0	NA	7.81E-41	3.641171102	2	1	0.358828898	2	2	0.641171102	unphased	2.173679282	1.086839641	2	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214003098	1	57056941	T	G	-	-	-	-	-	-	14	0	0	79	24	30.37974684	0	0	NA	0	0	NA	5.20E-36	3.641171102	2	1	0.358828898	2	2	0.641171102	unphased	1.879481209	0.939740605	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214003406	1	61898532	A	G	NFIA	CCDS44156.1	r.?	-	-	intronic	32	0	0	67	13	19.40298507	0	0	NA	0	0	NA	2.41E-17	3.641171102	2	1	0.358828898	2	2	0.641171102	unphased	1.200390051	1.200390051	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214004344	1	74493266	A	G	LRRIQ3	CCDS41350.1	r.?	-	-	intronic	43	0	0	67	26	38.80597015	0	0	NA	0	0	NA	3.31E-42	3.641171102	2	1	0.358828898	2	2	0.641171102	unphased	2.400780102	1.200390051	2	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214004357	1	74611189	A	G	LRRIQ3	CCDS41350.1	r.?	-	-	intronic	28	0	0	66	18	27.27272727	0	0	NA	0	0	NA	2.08E-26	3.641171102	2	1	0.358828898	2	2	0.641171102	unphased	1.68726154	0.84363077	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214005402	1	87286640	C	G	ENSG00000183291	ENST00000499679	r.?	-	-	intronic	19	0	0	74	22	29.72972973	0	0	NA	0	0	NA	6.78E-33	3.641171102	2	1	0.358828898	2	2	0.641171102	unphased	1.839267085	0.919633542	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214005441	1	87810864	T	G	LMO4	CCDS713.1	r.1663u>g	c.?	p.?	3'UTR variant	36	0	0	67	4	5.970149254	0	0	NA	0	0	NA	0.000372648	3.641171102	2	1	0.358828898	2	2	0.641171102	unphased	0.369350785	0.576056506	0.641171102	0.01	0.99	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214005499	1	88670884	C	G	-	-	-	-	-	-	33	0	0	63	22	34.92063492	0	0	NA	0	0	NA	1.03E-34	3.641171102	2	1	0.358828898	2	2	0.641171102	unphased	2.160408956	1.080204478	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214005608	1	90169387	A	G	LRRC8C	CCDS725.1	r.?	-	-	intronic	31	0	0	71	15	21.12676056	0	0	NA	0	0	NA	2.15E-20	3.641171102	2	1	0.358828898	2	2	0.641171102	unphased	1.307033588	1.307033588	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214005968	1	94728097	A	G	-	-	-	-	-	-	38	0	0	75	22	29.33333333	0	0	NA	0	0	NA	9.55E-33	3.641171102	2	1	0.358828898	2	2	0.641171102	unphased	1.814743523	0.907371762	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214006169	1	97664030	A	G	DPYD	CCDS30777.1	r.?	-	-	intronic	27	0	0	51	14	27.45098039	0	0	NA	0	0	NA	6.64E-21	3.641171102	2	1	0.358828898	2	2	0.641171102	unphased	1.698289394	0.849144697	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214006192	1	97866510	C	G	DPYD	CCDS30777.1	r.?	-	-	intronic	41	0	0	69	27	39.13043478	0	0	NA	0	0	NA	6.80E-44	3.641171102	2	1	0.358828898	2	2	0.641171102	unphased	2.420853514	1.210426757	2	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214006285	1	99178425	A	G	SNX7	CCDS755.2	r.?	-	-	intronic	44	0	0	79	19	24.05063291	2	0	0	0	0	NA	1.27E-26	3.641171102	2	1	0.358828898	2	2	0.641171102	unphased	1.487922624	1.095003666	1.358828898	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214006836	1	107759386	A	G	NTNG1	CCDS44180.1	r.?	-	-	intronic	31	0	0	72	18	25	0	0	NA	0	0	NA	1.22E-25	3.641171102	2	1	0.358828898	2	2	0.641171102	unphased	1.546656412	1.138227495	1.358828898	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214007000	1	109835884	C	G	MYBPHL	CCDS30793.1	r.?	-	-	intronic	30	0	0	63	15	23.80952381	0	0	NA	0	0	NA	2.97E-21	3.641171102	2	1	0.358828898	2	2	0.641171102	unphased	1.473006107	1.473006107	1	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214007088	1	111066733	C	G	KCNA10	CCDS826.1	r.?	-	-	upstream	18	0	0	64	19	29.6875	1	0	0	0	0	NA	1.34E-28	3.641171102	2	1	0.358828898	2	2	0.641171102	unphased	1.836654489	0.918327245	2	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214007111	1	111367649	A	G	-	-	-	-	-	-	25	0	0	58	8	13.79310345	0	0	NA	0	0	NA	5.99E-10	3.641171102	2	1	0.358828898	2	2	0.641171102	unphased	0.853327676	0.853327676	1	0.005	0.995	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214007782	1	119282077	A	G	-	-	-	-	-	-	23	0	0	66	7	10.60606061	0	0	NA	0	0	NA	4.70E-08	3.641171102	2	1	0.358828898	2	2	0.641171102	unphased	0.656157266	1.023373111	0.641171102	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214012774	1	146700005	T	G	FMO5	CCDS926.1	r.?	-	-	upstream	34	0	0	47	19	40.42553191	0	0	NA	0	0	NA	1.16E-31	3	2	1	1	NA	NA	NA	unphased	2.241779497	1.120889749	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214015062	1	159537058	A	G	-	-	-	-	-	-	21	0	0	83	18	21.68674699	0	0	NA	0	0	NA	2.09E-24	4	3	1	1	NA	NA	NA	unphased	1.419496166	1.419496166	1	0	0.99625	0.00375	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214015554	1	164407882	A	G	-	-	-	-	-	-	30	0	0	75	31	41.33333333	0	0	NA	0	0	NA	4.27E-51	4	3	1	1	NA	NA	NA	unphased	2.705454545	0.901818182	3	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214015926	1	168369138	A	G	-	-	-	-	-	-	25	0	0	94	14	14.89361702	0	0	NA	0	0	NA	7.32E-17	4	3	1	1	NA	NA	NA	unphased	0.974854932	0.974854932	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214016183	1	171414611	T	G	-	-	-	-	-	-	33	0	0	88	16	18.18181818	0	0	NA	0	0	NA	1.57E-20	4	3	1	1	NA	NA	NA	unphased	1.190082645	1.190082645	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214016321	1	173204368	T	G	AL022310.2	ENST00000421168	r.5450a>c	-	-	non-coding variant	35	0	0	86	5	5.813953488	0	0	NA	0	0	NA	7.77E-05	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	0.351280298	0.707418314	0.496566588	0.00375	0.99625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214016588	1	176787326	A	G	PAPPA2	CCDS41438.1	r.?	-	-	intronic	35	0	0	80	17	21.25	0	0	NA	0	0	NA	5.75E-23	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	1.283929491	1.283929491	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214016761	1	179262467	C	G	SOAT1	CCDS1330.1	r.?	-	-	upstream	10	0	0	79	7	8.860759494	0	0	NA	0	0	NA	1.65E-07	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	0.535368961	1.07814133	0.496566588	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214017296	1	185538677	C	G	-	-	-	-	-	-	27	0	0	64	7	10.9375	0	0	NA	0	0	NA	3.78E-08	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	0.660846061	1.330830704	0.496566588	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214017313	1	185868555	T	G	HMCN1	CCDS30956.1	r.?	-	-	intronic	29	0	0	74	13	17.56756757	0	0	NA	0	0	NA	9.62E-17	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	1.061436145	1.061436145	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214017366	1	186446704	C	G	-	-	-	-	-	-	41	0	0	71	15	21.12676056	0	0	NA	0	0	NA	2.15E-20	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	1.276483338	1.276483338	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214017401	1	186800759	T	G	PLA2G4A	CCDS1372.1	r.?	-	-	intronic	30	0	0	67	8	11.94029851	0	0	NA	0	0	NA	1.96E-09	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	0.721435359	0.721435359	1	0.00375	0.99625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214017450	1	187396389	C	G	-	-	-	-	-	-	44	0	0	70	10	14.28571429	0	0	NA	0	0	NA	2.95E-12	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	0.863145876	0.863145876	1	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214017470	1	187533952	C	G	-	-	-	-	-	-	32	0	0	93	5	5.376344086	0	0	NA	0	0	NA	0.000112692	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	0.324839846	0.654171775	0.496566588	0.00875	0.99125	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214017637	1	189679723	A	G	-	-	-	-	-	-	36	0	0	70	25	35.71428571	0	0	NA	0	0	NA	1.55E-39	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	2.15786469	1.078932345	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214017765	1	191314540	C	G	-	-	-	-	-	-	33	0	0	59	7	11.86440678	0	0	NA	0	0	NA	2.12E-08	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	0.716849965	0.716849965	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214017850	1	192877999	A	G	-	-	-	-	-	-	32	0	0	77	12	15.58441558	0	0	NA	0	0	NA	6.64E-15	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	0.941613683	0.941613683	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214018049	1	195316802	C	G	-	-	-	-	-	-	24	0	0	85	19	22.35294118	0	0	NA	0	0	NA	5.93E-26	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	1.35056943	1.35056943	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214018052	1	195442115	C	G	-	-	-	-	-	-	47	0	0	68	27	39.70588235	73	0	0	102	42	41.17647059	4.16E-44	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	2.399037803	0.960934835	2.496566588	0	1	0	2	1	1.39E-68	1	YES	1_1	somatic	custom.pulldown.HiSeq
1352322	PD9768b	1214018091	1	196222177	T	G	KCNT2	CCDS1384.1	r.?	-	-	intronic	41	0	0	95	34	35.78947368	0	0	NA	0	0	NA	2.98E-53	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	2.162407563	1.081203782	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214018097	1	196414954	A	G	KCNT2	CCDS1384.1	r.?	-	-	intronic	33	0	0	78	5	6.41025641	0	0	NA	0	0	NA	4.87E-05	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	0.387309047	0.779974039	0.496566588	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214019111	1	207303976	A	G	C4BPA	CCDS1477.1	r.?	-	-	intronic	29	0	0	73	9	12.32876712	0	0	NA	0	0	NA	1.42E-10	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	0.744906715	0.744906715	1	0.0075	0.9925	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214019337	1	210462057	C	G	-	-	-	-	-	-	27	0	0	83	13	15.6626506	0	0	NA	0	0	NA	4.66E-16	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	0.946340659	0.946340659	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214019969	1	217251721	T	G	ESRRG	CCDS1517.1	r.?	-	-	intronic	48	0	0	92	23	25	0	0	NA	0	0	NA	2.41E-32	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	1.510505283	1.009313782	1.496566588	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214020083	1	218857234	T	G	-	-	-	-	-	-	37	0	0	71	14	19.71830986	0	0	NA	0	0	NA	1.13E-18	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	1.191384449	1.191384449	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214020103	1	219044995	A	G	-	-	-	-	-	-	35	0	0	75	8	10.66666667	0	0	NA	0	0	NA	4.89E-09	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	0.644482254	1.297876801	0.496566588	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214020513	1	223913186	T	G	CAPN2	CCDS31035.1	r.?	-	-	intronic	24	0	0	88	11	12.5	0	0	NA	0	0	NA	1.10E-12	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	0.755252642	0.755252642	1	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214021085	1	229591616	C	G	NUP133	CCDS1579.1	r.?	-	-	intronic	39	0	0	70	28	40	0	0	NA	0	0	NA	8.50E-46	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	2.416808453	0.968052871	2.496566588	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214021279	1	231760775	C	G	DISC1	CCDS31056.1	r.?	-	-	upstream	30	0	0	78	29	37.17948718	0	0	NA	0	0	NA	3.09E-46	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	2.246392473	0.899792733	2.496566588	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214021431	1	233807408	T	G	KCNK1	CCDS1599.1	r.1311u>g	c.?	p.?	3'UTR variant	42	0	0	85	39	45.88235294	0	0	NA	0	0	NA	3.65E-66	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	2.772221461	1.110413588	2.496566588	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214021489	1	234354923	T	G	SLC35F3	CCDS1600.1	r.?	-	-	intronic	37	0	0	83	24	28.91566265	0	0	NA	0	0	NA	2.06E-35	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	1.747090448	0.873545224	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214021803	1	236974458	C	G	MTR	CCDS1614.1	r.?	-	-	intronic	35	0	0	64	10	15.625	0	0	NA	0	0	NA	1.16E-12	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	0.944065802	0.944065802	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214021841	1	237296025	T	G	RYR2	ENST00000366574	r.?	-	-	intronic	38	0	0	68	28	41.17647059	0	0	NA	0	0	NA	3.06E-46	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	2.487891055	0.996525014	2.496566588	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214021862	1	237391382	A	G	RYR2	ENST00000366574	r.?	-	-	intronic	23	0	0	55	9	16.36363636	0	0	NA	0	0	NA	1.01E-11	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	0.988694367	0.988694367	1	0.00125	0.9975	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214022026	1	239222992	A	G	-	-	-	-	-	-	30	0	0	69	28	40.57971014	0	0	NA	1	0	0	5.13E-46	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	2.451834663	0.982082623	2.496566588	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214022164	1	240630674	A	G	FMN2	CCDS31069.2	r.?	-	-	intronic	21	0	0	68	9	13.23529412	0	0	NA	0	0	NA	7.38E-11	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	0.799679268	0.799679268	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214022203	1	241139012	A	G	RGS7	CCDS31071.1	r.?	-	-	intronic	39	0	0	70	32	45.71428571	0	0	NA	0	0	NA	1.68E-54	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	2.762066804	1.106346138	2.496566588	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214022258	1	241904268	T	G	WDR64	ENST00000366552	r.?	-	-	intronic	20	0	0	69	11	15.94202899	0	0	NA	0	0	NA	6.82E-14	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	0.96322076	0.96322076	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214023557	10	1179214	A	G	WDR37	CCDS7057.1	r.?	-	-	downstream	35	0	0	230	10	4.347826087	0	0	NA	0	0	NA	3.37E-07	17.72953575	16	1	0.270464248	16	2	0.729535752	unphased	0.881521317	0.881521317	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214024001	10	1988105	A	G	-	-	-	-	-	-	26	0	0	245	12	4.897959184	0	0	NA	0	0	NA	6.19E-09	17.72953575	16	1	0.270464248	16	2	0.729535752	unphased	0.993060749	0.993060749	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214024068	10	2249213	C	G	-	-	-	-	-	-	36	0	0	155	10	6.451612903	0	0	NA	0	0	NA	8.29E-09	10.18708562	9	1	0.812914377	9	2	0.187085623	unphased	0.821454204	0.821454204	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214024452	10	3314703	A	G	-	-	-	-	-	-	29	0	0	158	13	8.227848101	0	0	NA	0	0	NA	2.30E-12	10.18708562	9	1	0.812914377	9	2	0.187085623	unphased	1.047614064	1.047614064	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214025206	10	6236419	A	G	PFKFB3	CCDS44353.1	r.?	-	-	intronic	39	0	0	89	10	11.23595506	0	0	NA	0	0	NA	3.47E-11	5.31519888	4	1	0.68480112	4	2	0.31519888	unphased	0.883219486	0.883219486	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214025283	10	6736299	T	G	-	-	-	-	-	-	35	0	0	99	11	11.11111111	0	0	NA	0	0	NA	4.11E-12	5.31519888	4	1	0.68480112	4	2	0.31519888	unphased	0.873405936	0.873405936	1	0.00125	0.9975	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214025743	10	9498338	A	G	-	-	-	-	-	-	34	0	0	94	20	21.27659574	0	0	NA	0	0	NA	9.05E-27	5.31519888	4	1	0.68480112	4	2	0.31519888	unphased	1.672479452	0.992686574	1.68480112	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214025893	10	10210825	C	G	-	-	-	-	-	-	37	0	0	139	19	13.66906475	0	0	NA	0	0	NA	1.27E-21	10	9	1	1	NA	NA	NA	unphased	1.714846305	0.857423152	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214025894	10	10210892	C	G	-	-	-	-	-	-	33	0	0	176	28	15.90909091	0	0	NA	0	0	NA	4.62E-33	10	9	1	1	NA	NA	NA	unphased	1.995867769	0.997933884	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214026262	10	12534176	T	G	CAMK1D	CCDS7091.1	r.?	-	-	intronic	10	0	0	91	14	15.38461538	0	0	NA	0	0	NA	4.55E-17	5.264024235	4	1	0.735975765	4	2	0.264024235	unphased	1.201458274	1.201458274	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214026429	10	13759412	C	G	FRMD4A	CCDS7101.1	r.?	-	-	intronic	39	0	0	89	8	8.988764045	0	0	NA	0	0	NA	1.92E-08	5.264024235	4	1	0.735975765	4	2	0.264024235	unphased	0.701975621	0.701975621	1	0.0075	0.9925	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214026568	10	14748881	T	G	FAM107B	CCDS7102.1	r.?	-	-	intronic	10	0	0	85	16	18.82352941	0	0	NA	0	0	NA	8.67E-21	4.370996424	3	1	0.629003576	4	1	0.370996424	unphased	1.301920183	1.301920183	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214026901	10	16996303	C	G	CUBN	CCDS7113.1	r.?	-	-	intronic	37	0	0	89	24	26.96629213	0	0	NA	0	0	NA	1.41E-34	4.370996424	3	1	0.629003576	4	1	0.370996424	unphased	1.865110374	0.932555187	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214027069	10	18861214	C	G	NSUN6	CCDS7130.1	r.?	-	-	intronic	43	0	0	99	20	20.2020202	0	0	NA	0	0	NA	2.81E-26	5	4	1	1	NA	NA	NA	unphased	1.524334252	0.762167126	2	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214027342	10	21693077	C	G	-	-	-	-	-	-	37	0	0	111	24	21.62162162	0	0	NA	0	0	NA	5.29E-32	6	5	1	1	NA	NA	NA	unphased	1.847665848	0.923832924	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214027734	10	26387176	T	G	MYO3A	CCDS7148.1	r.?	-	-	intronic	31	0	0	72	17	23.61111111	0	0	NA	0	0	NA	7.97E-24	3.282348422	2	1	0.717651578	2	2	0.282348422	unphased	1.376009034	1.376009034	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214027760	10	26622643	A	G	-	-	-	-	-	-	36	0	0	50	8	16	0	0	NA	0	0	NA	1.74E-10	3.282348422	2	1	0.717651578	2	2	0.282348422	unphased	0.932448475	0.932448475	1	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214028259	10	31698934	T	G	ZEB1	CCDS44370.1	r.?	-	-	intronic	37	0	0	70	15	21.42857143	0	0	NA	0	0	NA	1.70E-20	3.282348422	2	1	0.717651578	2	2	0.282348422	unphased	1.248814922	1.248814922	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214028495	10	35205585	T	G	-	-	-	-	-	-	28	0	0	62	22	35.48387097	0	0	NA	0	0	NA	6.75E-35	3.282348422	2	1	0.717651578	2	2	0.282348422	unphased	2.067930085	1.033965043	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214031314	10	45542465	C	G	-	-	-	-	-	-	26	0	0	50	11	22	0	0	NA	0	0	NA	1.52E-15	2.384744114	1	1	0.615255886	2	1	0.384744114	unphased	1.084643705	1.084643705	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214031324	10	45642112	C	G	-	-	-	-	-	-	25	0	0	58	20	34.48275862	0	0	NA	0	0	NA	1.47E-31	2.384744114	1	1	0.615255886	2	1	0.384744114	unphased	1.700068503	1.22771311	1.384744114	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214031806	10	54745168	A	G	-	-	-	-	-	-	36	0	0	40	17	42.5	0	0	NA	0	0	NA	6.07E-29	2.384744114	1	1	0.615255886	2	1	0.384744114	unphased	2.09533443	1.513156408	1.384744114	0	0.99375	0.00625	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214031869	10	55820513	T	G	PCDH15	CCDS44404.1	r.?	-	-	intronic	23	0	0	64	22	34.375	0	0	NA	0	0	NA	1.57E-34	2.384744114	1	1	0.615255886	2	1	0.384744114	unphased	1.694755789	1.223876507	1.384744114	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214031882	10	56065431	C	G	PCDH15	CCDS44404.1	r.?	-	-	intronic	40	0	0	69	16	23.1884058	0	0	NA	0	0	NA	2.27E-22	2	1	1	1	NA	NA	NA	unphased	1.054018445	1.054018445	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214031918	10	56500528	A	G	PCDH15	CCDS44404.1	r.?	-	-	intronic	37	0	0	69	17	24.63768116	0	0	NA	0	0	NA	3.56E-24	2	1	1	1	NA	NA	NA	unphased	1.119894598	1.119894598	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214031987	10	57402236	C	G	-	-	-	-	-	-	36	0	0	59	13	22.03389831	0	0	NA	0	0	NA	3.99E-18	2	1	1	1	NA	NA	NA	unphased	1.001540832	1.001540832	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214033685	10	79927440	A	G	-	-	-	-	-	-	37	0	0	67	20	29.85074627	0	0	NA	0	0	NA	4.42E-30	4	2	2	1	NA	NA	NA	unphased	1.953867028	0.976933514	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214034402	10	92577381	A	G	HTR7	CCDS7408.1	r.?	-	-	intronic	37	0	0	53	11	20.75471698	0	0	NA	2	0	0	3.07E-15	4	2	2	1	NA	NA	NA	unphased	1.358490566	1.358490566	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214035405	10	107105180	C	G	-	-	-	-	-	-	33	0	0	63	14	22.22222222	0	0	NA	0	0	NA	1.81E-19	4	2	2	1	NA	NA	NA	unphased	1.454545455	1.454545455	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214035577	10	109571182	A	G	-	-	-	-	-	-	44	0	0	78	17	21.79487179	0	0	NA	0	0	NA	3.59E-23	4	2	2	1	NA	NA	NA	unphased	1.426573427	1.426573427	1	0	0.995	0.005	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214035630	10	110391494	C	G	-	-	-	-	-	-	27	0	0	63	10	15.87301587	0	0	NA	0	0	NA	9.81E-13	4	2	2	1	NA	NA	NA	unphased	1.038961039	1.038961039	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214035703	10	111716262	C	G	ENSG00000203876	ENST00000369654	r.?	-	-	intronic	26	0	0	68	25	36.76470588	0	0	NA	0	0	NA	6.41E-40	4	2	2	1	NA	NA	NA	unphased	2.406417112	1.203208556	2	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214035716	10	111969261	A	G	MXI1	CCDS7563.1	r.?	-	-	intronic	14	0	0	52	10	19.23076923	0	0	NA	0	0	NA	1.28E-13	4	2	2	1	NA	NA	NA	unphased	1.258741259	1.258741259	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214035725	10	112124372	C	G	-	-	-	-	-	-	8	0	0	48	9	18.75	0	0	NA	0	0	NA	2.75E-12	4	2	2	1	NA	NA	NA	unphased	1.227272727	1.227272727	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214035764	10	112506226	T	G	RBM20	CCDS44477.1	r.?	-	-	intronic	39	0	0	79	21	26.58227848	0	0	NA	0	0	NA	2.69E-30	4	2	2	1	NA	NA	NA	unphased	1.739930955	0.869965478	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214035867	10	113859885	C	G	-	-	-	-	-	-	33	0	0	74	9	12.16216216	0	0	NA	0	0	NA	1.61E-10	4	2	2	1	NA	NA	NA	unphased	0.796068796	0.796068796	1	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214035950	10	114886447	A	G	TCF7L2	CCDS7576.1	r.?	-	-	intronic	8	0	0	65	13	20	0	0	NA	0	0	NA	1.57E-17	4	2	2	1	NA	NA	NA	unphased	1.309090909	1.309090909	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214036312	10	118759914	A	G	KIAA1598	CCDS44482.1	r.?	-	-	intronic	26	0	0	67	11	16.41791045	0	0	NA	0	0	NA	4.85E-14	4	2	2	1	NA	NA	NA	unphased	1.074626866	1.074626866	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214036817	10	125323282	A	G	-	-	-	-	-	-	6	0	0	80	27	33.75	0	0	NA	0	0	NA	8.87E-42	4	2	2	1	NA	NA	NA	unphased	2.209090909	1.104545455	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214037141	10	127798402	C	G	ADAM12	CCDS7653.1	r.930g>c	c.620G>C	p.R207T	missense	45	0	0	72	6	8.333333333	269	0	0	192	12	6.25	1.84E-06	4	2	2	1	NA	NA	NA	unphased	0.545454545	0.545454545	1	0.02125	0.97875	0	2	1	3.93E-10	1	YES	1_1	somatic	custom.pulldown.HiSeq
1352322	PD9768b	1214037399	10	132213356	C	G	-	-	-	-	-	-	35	0	0	68	15	22.05882353	0	0	NA	0	0	NA	1.06E-20	4	2	2	1	NA	NA	NA	unphased	1.443850267	1.443850267	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214037437	10	132628756	A	G	-	-	-	-	-	-	42	0	0	71	16	22.53521127	0	0	NA	0	0	NA	3.77E-22	4	2	2	1	NA	NA	NA	unphased	1.47503201	1.47503201	1	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214038363	11	7257827	C	G	MIR302E	ENST00000408776	r.?	-	-	downstream	29	0	0	69	8	11.5942029	0	0	NA	0	0	NA	2.49E-09	3	2	1	1	NA	NA	NA	unphased	0.642951252	0.642951252	1	0.01375	0.98625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214038934	11	16572580	C	G	-	-	-	-	-	-	33	0	0	62	7	11.29032258	0	0	NA	0	0	NA	3.02E-08	3	2	1	1	NA	NA	NA	unphased	0.626099707	0.626099707	1	0.01125	0.98875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214039014	11	17915033	T	G	SERGEF	CCDS7828.1	r.?	-	-	intronic	39	0	0	91	13	14.28571429	0	0	NA	0	0	NA	1.63E-15	3	2	1	1	NA	NA	NA	unphased	0.792207792	0.792207792	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214039474	11	24494741	C	G	-	-	-	-	-	-	26	0	0	55	5	9.090909091	0	0	NA	0	0	NA	8.83E-06	3	2	1	1	NA	NA	NA	unphased	0.504132231	0.504132231	1	0.03375	0.96625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214039655	11	26755974	A	G	-	-	-	-	-	-	30	0	0	63	14	22.22222222	0	0	NA	0	0	NA	1.81E-19	3	2	1	1	NA	NA	NA	unphased	1.232323232	1.232323232	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214039901	11	31277192	C	G	-	-	-	-	-	-	38	0	0	61	6	9.836065574	0	0	NA	0	0	NA	6.85E-07	3	2	1	1	NA	NA	NA	unphased	0.545454545	0.545454545	1	0.02625	0.97375	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214039988	11	32642796	T	G	CCDC73	CCDS41630.1	r.?	-	-	intronic	30	0	0	70	17	24.28571429	0	0	NA	0	0	NA	4.68E-24	3	2	1	1	NA	NA	NA	unphased	1.346753247	1.346753247	1	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214040110	11	34032253	T	G	-	-	-	-	-	-	24	0	0	69	22	31.88405797	0	0	NA	0	0	NA	1.12E-33	4	3	1	1	NA	NA	NA	unphased	2.086956522	1.043478261	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214040162	11	34707183	T	G	-	-	-	-	-	-	28	0	0	57	19	33.33333333	0	0	NA	0	0	NA	1.01E-29	2.86642458	1	1	0.13357542	2	1	0.86642458	unphased	1.803959709	0.966532335	1.86642458	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214040258	11	36173532	C	G	LDLRAD3	CCDS31462.1	r.?	-	-	intronic	26	0	0	56	17	30.35714286	0	0	NA	0	0	NA	6.22E-26	2.86642458	1	1	0.13357542	2	1	0.86642458	unphased	1.642891878	0.880234805	1.86642458	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214040263	11	36253737	A	G	LDLRAD3	CCDS31462.1	r.?	-	-	downstream	31	0	0	77	6	7.792207792	0	0	NA	0	0	NA	2.73E-06	2.86642458	1	1	0.13357542	2	1	0.86642458	unphased	0.421704867	0.486718494	0.86642458	0.08125	0.91875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214040670	11	42541090	C	G	-	-	-	-	-	-	36	0	0	70	16	22.85714286	0	0	NA	0	0	NA	2.93E-22	2.86642458	1	1	0.13357542	2	1	0.86642458	unphased	1.237000943	1.237000943	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214041403	11	49401799	A	G	-	-	-	-	-	-	29	0	0	68	13	19.11764706	0	0	NA	0	0	NA	2.96E-17	2.86642458	1	1	0.13357542	2	1	0.86642458	unphased	1.034623951	1.034623951	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214044218	11	82513042	T	G	-	-	-	-	-	-	25	0	0	50	25	50	0	0	NA	0	0	NA	3.34E-44	3.115135856	3	0	0.884864144	3	1	0.115135856	unphased	2.830295201	0.981084398	2.884864144	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214044288	11	84193779	C	G	DLG2	CCDS41696.1	r.?	-	-	intronic	36	0	0	51	5	9.803921569	0	0	NA	0	0	NA	6.06E-06	1.579521336	1	0	0.420478664	2	0	0.579521336	unphased	0.4044094	0.697833496	0.579521336	0.00625	0.99375	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214044536	11	88132116	C	G	-	-	-	-	-	-	35	0	0	66	33	50	0	0	NA	0	0	NA	7.16E-58	2.61870717	2	0	0.38129283	3	0	0.61870717	unphased	2.582080858	0.98601359	2.61870717	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214044992	11	95601283	C	G	MTMR2	CCDS8305.1	r.?	-	-	intronic	16	0	0	57	12	21.05263158	0	0	NA	0	0	NA	1.40E-16	2.61870717	2	0	0.38129283	3	0	0.61870717	unphased	1.08719194	1.08719194	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214045034	11	96557746	C	G	-	-	-	-	-	-	17	0	0	64	7	10.9375	0	0	NA	0	0	NA	3.78E-08	2.61870717	2	0	0.38129283	3	0	0.61870717	unphased	0.564830188	0.912920062	0.61870717	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214045077	11	97277341	A	G	-	-	-	-	-	-	29	0	0	51	26	50.98039216	0	0	NA	0	0	NA	3.27E-46	2.61870717	2	0	0.38129283	3	0	0.61870717	unphased	2.632709894	1.00534719	2.61870717	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214045296	11	100020518	T	G	CNTN5	ENST00000279463	r.?	-	-	intronic	17	0	0	59	11	18.6440678	0	0	NA	0	0	NA	1.10E-14	2.61870717	2	0	0.38129283	3	0	0.61870717	unphased	0.962809811	0.962809811	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214045313	11	100152434	C	G	CNTN5	ENST00000279463	r.?	-	-	intronic	32	0	0	63	10	15.87301587	0	0	NA	0	0	NA	9.81E-13	2.61870717	2	0	0.38129283	3	0	0.61870717	unphased	0.819708209	0.819708209	1	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214045785	11	106328776	C	G	-	-	-	-	-	-	30	0	0	72	16	22.22222222	0	0	NA	0	0	NA	4.82E-22	2.61870717	2	0	0.38129283	3	0	0.61870717	unphased	1.147591492	1.147591492	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214045806	11	106655385	C	G	GUCY1A2	CCDS8335.1	r.?	-	-	intronic	40	0	0	64	12	18.75	0	0	NA	0	0	NA	6.30E-16	2.61870717	2	0	0.38129283	3	0	0.61870717	unphased	0.968280322	0.968280322	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214047664	11	131828561	A	G	OPCML	CCDS8491.1	r.?	-	-	intronic	30	0	0	68	14	20.58823529	0	0	NA	0	0	NA	5.84E-19	2.61870717	2	0	0.38129283	3	0	0.61870717	unphased	1.063209765	1.063209765	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214047676	11	131953713	A	G	OPCML	CCDS8491.1	r.?	-	-	intronic	36	0	0	77	26	33.76623377	0	0	NA	0	0	NA	2.70E-40	2.61870717	2	0	0.38129283	3	0	0.61870717	unphased	1.743742917	1.077244204	1.61870717	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214047720	11	132643219	T	G	ENSG00000183715	CCDS8492.1	r.?	-	-	intronic	29	0	0	52	11	21.15384615	0	0	NA	0	0	NA	2.44E-15	2.49427502	2	0	0.50572498	3	0	0.49427502	unphased	1.066096639	1.066096639	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214048141	12	738601	A	G	NINJ2	CCDS8505.1	r.?	-	-	intronic	10	0	0	142	21	14.78873239	0	0	NA	0	0	NA	1.74E-24	15	13	2	1	NA	NA	NA	unphased	2.59475032	0.864916773	3	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214050049	12	7628408	T	G	CD163	CCDS8578.1	r.?	-	-	intronic	38	0	0	116	7	6.034482759	0	0	NA	0	0	NA	2.26E-06	9	7	2	1	NA	NA	NA	unphased	0.696708464	0.696708464	1	0.0125	0.9875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214050052	12	7684826	A	G	-	-	-	-	-	-	30	0	0	105	7	6.666666667	0	0	NA	0	0	NA	1.16E-06	9	7	2	1	NA	NA	NA	unphased	0.76969697	0.76969697	1	0.00375	0.99625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214051019	12	11208776	C	G	TAS2R14	ENST00000381852	r.?	-	-	intronic	43	0	0	88	12	13.63636364	0	0	NA	0	0	NA	3.53E-14	8.227310559	7	1	0.772689441	7	2	0.227310559	unphased	1.469013423	1.469013423	1	0	0.99625	0.00375	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214051119	12	11371714	A	G	-	-	-	-	-	-	22	0	0	148	100	67.56756757	0	0	NA	0	0	NA	1.37E-191	8.227310559	7	1	0.772689441	7	2	0.227310559	unphased	7.278895341	1.039842192	7	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214051129	12	11402139	T	G	-	-	-	-	-	-	41	0	0	175	9	5.142857143	0	0	NA	0	0	NA	3.19E-07	8.227310559	7	1	0.772689441	7	2	0.227310559	unphased	0.55402792	0.55402792	1	0.0475	0.9525	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214052091	12	14393367	C	G	-	-	-	-	-	-	20	0	0	104	15	14.42307692	0	0	NA	0	0	NA	9.59E-18	10.39661528	9	1	0.603384719	9	2	0.396615281	unphased	1.866644686	0.933322343	2	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214052211	12	14837877	C	G	GUCY2C	CCDS8664.1	r.?	-	-	intronic	28	0	0	165	9	5.454545455	0	0	NA	0	0	NA	1.94E-07	10.39661528	9	1	0.603384719	9	2	0.396615281	unphased	0.705931081	0.705931081	1	0.005	0.995	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214052247	12	14973556	A	G	C12orf60	CCDS8667.1	r.?	-	-	intronic	33	0	0	143	18	12.58741259	0	0	NA	0	0	NA	6.74E-20	10.39661528	9	1	0.603384719	9	2	0.396615281	unphased	1.629071726	1.016020489	1.603384719	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214052250	12	15038518	C	G	MGP	CCDS8669.1	r.?	-	-	intronic	35	0	0	174	17	9.770114943	0	0	NA	0	0	NA	5.59E-17	10.39661528	9	1	0.603384719	9	2	0.396615281	unphased	1.264455098	1.264455098	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214053950	12	20502538	A	G	-	-	-	-	-	-	34	0	0	294	14	4.761904762	0	0	NA	0	0	NA	4.99E-10	19.33517885	18	1	0.664821146	18	2	0.335178854	unphased	1.041934924	1.041934924	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214053959	12	20530359	C	G	PDE3A	CCDS31754.1	r.?	-	-	intronic	28	0	0	271	7	2.58302583	0	0	NA	0	0	NA	0.000489157	19.33517885	18	1	0.664821146	18	2	0.335178854	unphased	0.565182413	0.565182413	1	0.0175	0.9825	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214054058	12	20739736	C	G	PDE3A	CCDS31754.1	r.?	-	-	intronic	43	0	0	196	6	3.06122449	0	0	NA	0	0	NA	0.000507268	19.33517885	18	1	0.664821146	18	2	0.335178854	unphased	0.669815308	0.669815308	1	0.0125	0.9875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214054106	12	20852740	A	G	SLCO1C1	CCDS8683.1	r.?	-	-	intronic	31	0	0	282	18	6.382978723	0	0	NA	0	0	NA	1.25E-14	19.33517885	18	1	0.664821146	18	2	0.335178854	unphased	1.396636174	1.396636174	1	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214054310	12	21068191	C	G	SLCO1B3	CCDS8684.1	r.?	-	-	intronic	40	0	0	250	8	3.2	0	0	NA	0	0	NA	4.53E-05	19.33517885	18	1	0.664821146	18	2	0.335178854	unphased	0.700180269	0.700180269	1	0.0075	0.9925	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214054818	12	21785275	C	G	LDHB	CCDS8691.1	r.?	-	-	downstream	41	0	0	388	11	2.835051546	0	0	NA	0	0	NA	5.69E-06	19.33517885	18	1	0.664821146	18	2	0.335178854	unphased	0.620327236	0.620327236	1	0.01375	0.98625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214055565	12	23870684	A	G	SOX5	CCDS8699.1	r.?	-	-	intronic	38	0	0	250	30	12	0	0	NA	0	0	NA	1.71E-31	12	11	1	1	NA	NA	NA	unphased	1.745454545	0.872727273	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214055833	12	24869954	C	G	-	-	-	-	-	-	36	0	0	126	16	12.6984127	0	0	NA	0	0	NA	6.49E-18	6	5	1	1	NA	NA	NA	unphased	1.085137085	1.085137085	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214057050	12	28165361	A	G	-	-	-	-	-	-	39	0	0	200	27	13.5	0	0	NA	0	0	NA	6.34E-30	9.203254684	8	1	0.796745316	8	2	0.203254684	unphased	1.586075746	0.882749342	1.796745316	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214057081	12	28304093	T	G	-	-	-	-	-	-	31	0	0	141	18	12.76595745	0	0	NA	0	0	NA	5.19E-20	9.203254684	8	1	0.796745316	8	2	0.203254684	unphased	1.499835221	0.834751151	1.796745316	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214057230	12	28985607	C	G	-	-	-	-	-	-	25	0	0	235	19	8.085106383	0	0	NA	1	0	0	2.98E-17	20	19	1	1	NA	NA	NA	unphased	1.822823985	0.911411992	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214057448	12	29330815	A	G	-	-	-	-	-	-	33	0	0	360	10	2.777777778	0	0	NA	0	0	NA	1.78E-05	20	19	1	1	NA	NA	NA	unphased	0.626262626	0.626262626	1	0.0175	0.9825	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214057478	12	29367207	T	G	-	-	-	-	-	-	40	0	0	329	15	4.559270517	0	0	NA	0	0	NA	2.22E-10	20	19	1	1	NA	NA	NA	unphased	1.027908262	1.027908262	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214057676	12	29809749	C	G	TMTC1	CCDS8718.1	r.?	-	-	intronic	39	0	0	240	8	3.333333333	0	0	NA	0	0	NA	3.40E-05	20	19	1	1	NA	NA	NA	unphased	0.751515152	0.751515152	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214057968	12	31344049	A	G	ENSG00000177359	ENST00000266524	r.?	-	-	intronic	22	0	0	96	9	9.375	0	0	NA	0	0	NA	1.71E-09	8	6	2	1	NA	NA	NA	unphased	0.988636364	0.988636364	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214058141	12	31976090	T	G	-	-	-	-	-	-	26	0	0	96	13	13.54166667	0	0	NA	0	0	NA	3.35E-15	8	6	2	1	NA	NA	NA	unphased	1.428030303	1.428030303	1	0	0.99625	0.00375	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214058427	12	33445785	C	G	-	-	-	-	-	-	49	0	0	107	7	6.542056075	0	0	NA	0	0	NA	1.32E-06	8	6	2	1	NA	NA	NA	unphased	0.68988955	0.68988955	1	0.00625	0.99375	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214058499	12	33988296	C	G	-	-	-	-	-	-	44	0	0	107	5	4.672897196	0	0	NA	0	0	NA	0.000217575	8	6	2	1	NA	NA	NA	unphased	0.49277825	0.49277825	1	0.03125	0.96875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214059429	12	39140770	A	G	CPNE8	CCDS8733.1	r.?	-	-	intronic	38	0	0	82	23	28.04878049	0	0	NA	0	0	NA	1.19E-33	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	1.418867963	0.937711258	1.513118191	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214059567	12	40934451	C	G	MUC19	ENST00000380816	r.?	-	-	upstream	42	0	0	68	16	23.52941176	0	0	NA	0	0	NA	1.75E-22	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	1.190252409	1.190252409	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214059627	12	41953661	A	G	PDZRN4	CCDS8739.1	r.?	-	-	intronic	25	0	0	80	21	26.25	0	0	NA	0	0	NA	3.63E-30	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	1.327875343	1.327875343	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214059921	12	46520035	A	G	-	-	-	-	-	-	25	0	0	71	15	21.12676056	0	0	NA	0	0	NA	2.15E-20	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	1.06871255	1.06871255	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214060941	12	57931044	C	G	DCTN2	CCDS44930.1	r.?	-	-	intronic	15	0	0	65	25	38.46153846	0	0	NA	0	0	NA	1.60E-40	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	1.945604899	1.285824802	1.513118191	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214061342	12	64096085	C	G	-	-	-	-	-	-	29	1	3.448275862	57	8	14.03508772	0	0	NA	0	0	NA	5.19E-10	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	0.709975121	0.709975121	1	0.00125	0.99875	0	2	0.135292269	1	1	NA	NA	NA	NA
1352322	PD9768b	1214061397	12	64784696	T	G	C12orf56	CCDS44935.1	r.?	-	-	upstream	10	0	0	60	16	26.66666667	0	0	NA	0	0	NA	1.86E-23	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	1.34895273	1.34895273	1	0	0.99375	0.00625	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214061675	12	68734641	C	G	-	-	-	-	-	-	39	0	0	66	10	15.15151515	0	0	NA	0	0	NA	1.60E-12	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	0.766450415	0.766450415	1	0.005	0.995	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214061992	12	73765581	A	G	-	-	-	-	-	-	31	0	0	36	6	16.66666667	0	0	NA	0	0	NA	2.68E-08	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	0.843095456	0.843095456	1	0.00375	0.99625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214062036	12	74439181	A	G	-	-	-	-	-	-	27	0	0	61	11	18.03278689	0	0	NA	0	0	NA	1.62E-14	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	0.912201641	0.912201641	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214062068	12	74919908	A	G	-	-	-	-	-	-	34	0	0	82	24	29.26829268	0	0	NA	0	0	NA	1.47E-35	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	1.480557874	0.978481313	1.513118191	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214062451	12	80916906	C	G	PTPRQ	ENST00000418574	r.?	-	-	intronic	33	0	0	51	16	31.37254902	0	0	NA	0	0	NA	9.28E-25	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	1.587003212	1.048829642	1.513118191	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214062460	12	81062849	T	G	PTPRQ	ENST00000418574	r.6328u>g	c.6328T>G	p.F2110V	missense	25	0	0	76	22	28.94736842	151	0	0	170	38	22.35294118	1.34E-32	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	1.464323687	0.967752351	1.513118191	0	1	0	2	1	2.37E-50	1	YES	1_1	somatic	custom.pulldown.HiSeq
1352322	PD9768b	1214062893	12	88274071	C	G	-	-	-	-	-	-	35	0	0	72	31	43.05555556	0	0	NA	0	0	NA	8.50E-52	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	2.177996595	1.439409431	1.513118191	0	0.9925	0.0075	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214063051	12	90867694	T	G	-	-	-	-	-	-	35	0	0	68	16	23.52941176	0	0	NA	0	0	NA	1.75E-22	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	1.190252409	1.190252409	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214063201	12	93350664	C	G	-	-	-	-	-	-	24	0	0	52	14	26.92307692	0	0	NA	0	0	NA	9.04E-21	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	1.361923429	1.361923429	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214063286	12	94610515	A	G	PLXNC1	CCDS9049.1	r.?	-	-	intronic	29	0	0	70	16	22.85714286	0	0	NA	0	0	NA	2.93E-22	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	1.156245197	1.156245197	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214063450	12	96509233	C	G	-	-	-	-	-	-	21	0	0	73	16	21.91780822	0	0	NA	0	0	NA	6.15E-22	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	1.108728271	1.108728271	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214063538	12	97843695	T	G	-	-	-	-	-	-	35	0	0	57	7	12.28070175	0	0	NA	0	0	NA	1.66E-08	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	0.621228231	1.210692276	0.513118191	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214063682	12	100105852	C	G	ANKS1B	ENST00000329257	r.?	-	-	intronic	30	0	0	71	20	28.16901408	0	0	NA	0	0	NA	1.68E-29	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	1.424950067	1.424950067	1	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214065100	12	120243823	C	G	CIT	CCDS9192.1	r.?	-	-	intronic	32	0	0	65	5	7.692307692	0	0	NA	0	0	NA	2.01E-05	3.809816191	2	1	0.190183809	2	2	0.809816191	unphased	0.48886698	0.60367647	0.809816191	0.01	0.99	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214065761	12	129124253	A	G	TMEM132C	CCDS45009.1	r.?	-	-	intronic	29	0	0	56	10	17.85714286	0	0	NA	0	0	NA	2.82E-13	3.809816191	2	1	0.190183809	2	2	0.809816191	unphased	1.134869774	1.134869774	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214066680	13	21257876	A	G	IFT88	CCDS31945.1	r.?	-	-	intronic	32	0	0	65	17	26.15384615	0	0	NA	0	0	NA	1.14E-24	4	2	2	1	NA	NA	NA	unphased	1.711888112	0.855944056	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214066757	13	21812687	A	G	-	-	-	-	-	-	30	0	0	72	32	44.44444444	0	0	NA	0	0	NA	5.47E-54	4	2	2	1	NA	NA	NA	unphased	2.909090909	1.454545455	2	0	0.985	0.015	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214066921	13	23196334	C	G	-	-	-	-	-	-	28	0	0	77	25	32.46753247	0	0	NA	0	0	NA	2.69E-38	4	2	2	1	NA	NA	NA	unphased	2.12514758	1.06257379	2	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214067531	13	29522519	A	G	-	-	-	-	-	-	41	0	0	63	21	33.33333333	0	0	NA	0	0	NA	1.08E-32	4	2	2	1	NA	NA	NA	unphased	2.181818182	1.090909091	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214068278	13	40550265	C	G	-	-	-	-	-	-	29	0	0	52	18	34.61538462	0	0	NA	0	0	NA	1.39E-28	3	2	1	1	NA	NA	NA	unphased	1.91958042	0.95979021	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214068715	13	46837174	C	G	LRRC63	ENST00000446175	r.?	-	-	intronic	28	0	0	46	11	23.91304348	0	0	NA	0	0	NA	5.55E-16	3	2	1	1	NA	NA	NA	unphased	1.326086957	1.326086957	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214068914	13	49481003	A	G	-	-	-	-	-	-	18	0	0	51	9	17.64705882	0	0	NA	0	0	NA	4.92E-12	3	2	1	1	NA	NA	NA	unphased	0.978609626	0.978609626	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214069273	13	55504241	T	G	-	-	-	-	-	-	39	0	0	56	9	16.07142857	0	0	NA	0	0	NA	1.20E-11	3	2	1	1	NA	NA	NA	unphased	0.891233766	0.891233766	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214069403	13	57832683	A	G	-	-	-	-	-	-	45	0	0	67	24	35.82089552	0	0	NA	0	0	NA	4.72E-38	3	2	1	1	NA	NA	NA	unphased	1.986431479	0.993215739	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214069462	13	58680193	T	G	-	-	-	-	-	-	42	0	0	73	9	12.32876712	0	0	NA	0	0	NA	1.42E-10	3	2	1	1	NA	NA	NA	unphased	0.683686177	0.683686177	1	0.00125	0.9975	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214069476	13	58962292	A	G	-	-	-	-	-	-	34	0	0	43	5	11.62790698	0	0	NA	0	0	NA	2.57E-06	3	2	1	1	NA	NA	NA	unphased	0.644820296	0.644820296	1	0.01625	0.98375	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214069699	13	62856603	C	G	-	-	-	-	-	-	26	0	0	84	12	14.28571429	0	0	NA	0	0	NA	1.98E-14	3	2	1	1	NA	NA	NA	unphased	0.792207792	0.792207792	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214069922	13	64682610	T	G	-	-	-	-	-	-	19	0	0	48	11	22.91666667	0	0	NA	0	0	NA	9.31E-16	3	2	1	1	NA	NA	NA	unphased	1.270833333	1.270833333	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214070031	13	66458227	C	G	-	-	-	-	-	-	44	0	0	68	17	25	0	0	NA	0	0	NA	2.69E-24	3	2	1	1	NA	NA	NA	unphased	1.386363636	1.386363636	1	0	0.99625	0.00375	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214070128	13	67935676	C	G	-	-	-	-	-	-	37	0	0	65	8	12.30769231	0	0	NA	0	0	NA	1.53E-09	3	2	1	1	NA	NA	NA	unphased	0.682517483	0.682517483	1	0.00875	0.99125	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214070177	13	68690449	A	G	-	-	-	-	-	-	31	0	0	67	10	14.92537313	0	0	NA	0	0	NA	1.87E-12	3	2	1	1	NA	NA	NA	unphased	0.827679783	0.827679783	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214070977	13	81060185	A	G	-	-	-	-	-	-	44	0	0	62	21	33.87096774	0	0	NA	0	0	NA	7.22E-33	3	2	1	1	NA	NA	NA	unphased	1.87829912	0.93914956	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214071230	13	85118139	A	G	-	-	-	-	-	-	47	0	0	72	9	12.5	0	0	NA	0	0	NA	1.25E-10	3	2	1	1	NA	NA	NA	unphased	0.693181818	0.693181818	1	0.01	0.99	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214071397	13	87944641	A	G	-	-	-	-	-	-	28	0	0	66	23	34.84848485	0	0	NA	0	0	NA	3.38E-36	3	2	1	1	NA	NA	NA	unphased	1.932506887	0.966253444	2	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214071477	13	89134891	C	G	-	-	-	-	-	-	42	0	0	66	23	34.84848485	0	0	NA	0	0	NA	3.38E-36	3	2	1	1	NA	NA	NA	unphased	1.932506887	0.966253444	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214071699	13	92460180	A	G	GPC5	CCDS9468.1	r.?	-	-	intronic	38	0	0	66	15	22.72727273	0	0	NA	0	0	NA	6.45E-21	3	2	1	1	NA	NA	NA	unphased	1.260330579	1.260330579	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214071768	13	93710937	C	G	-	-	-	-	-	-	25	0	0	64	7	10.9375	0	0	NA	0	0	NA	3.78E-08	3	2	1	1	NA	NA	NA	unphased	0.606534091	0.606534091	1	0.01375	0.98625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214071836	13	94597113	A	G	GPC6	CCDS9469.1	r.?	-	-	intronic	39	0	0	74	8	10.81081081	0	0	NA	0	0	NA	4.39E-09	3	2	1	1	NA	NA	NA	unphased	0.5995086	0.5995086	1	0.01625	0.98375	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214072099	13	98855234	A	G	FARP1	CCDS9487.1	r.?	-	-	intronic	29	0	0	66	13	19.6969697	0	0	NA	0	0	NA	1.95E-17	3	2	1	1	NA	NA	NA	unphased	1.092286501	1.092286501	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214072100	13	98870540	A	G	FARP1	CCDS9487.1	r.?	-	-	intronic	16	0	0	62	10	16.12903226	0	0	NA	0	0	NA	8.29E-13	3	2	1	1	NA	NA	NA	unphased	0.894428152	0.894428152	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214072169	13	99991133	C	G	UBAC2	CCDS9490.1	r.?	-	-	intronic	36	0	0	61	24	39.3442623	0	0	NA	0	0	NA	2.97E-39	3	2	1	1	NA	NA	NA	unphased	2.181818182	1.090909091	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214072309	13	101835839	C	G	NALCN	CCDS9498.1	r.?	-	-	intronic	22	0	0	66	23	34.84848485	0	0	NA	0	0	NA	3.38E-36	3	2	1	1	NA	NA	NA	unphased	1.932506887	0.966253444	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214072523	13	105352058	T	G	-	-	-	-	-	-	36	0	0	63	15	23.80952381	0	0	NA	0	0	NA	2.97E-21	3	2	1	1	NA	NA	NA	unphased	1.32034632	1.32034632	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214072705	13	108170562	C	G	FAM155A	CCDS32006.1	r.?	-	-	intronic	39	0	0	75	8	10.66666667	100	0	0	141	7	4.964539007	4.89E-09	3	2	1	1	NA	NA	NA	unphased	0.591515152	0.591515152	1	0.025	0.975	0	2	1	8.23E-06	1	YES	1_1	somatic	custom.pulldown.HiSeq
1352322	PD9768b	1214072776	13	108919093	C	G	TNFSF13B	CCDS45067.1	r.?	-	-	upstream	35	0	0	59	19	32.20338983	0	0	NA	0	0	NA	2.20E-29	3	2	1	1	NA	NA	NA	unphased	1.785824345	0.892912173	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214074040	14	24330021	C	G	-	-	-	-	-	-	29	0	0	48	4	8.333333333	0	0	NA	0	0	NA	0.000102016	1.777411379	1	0	0.222588621	2	0	0.777411379	unphased	0.360238827	0.463382498	0.777411379	0.04875	0.95125	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214074256	14	28399522	A	G	-	-	-	-	-	-	19	0	0	57	7	12.28070175	0	0	NA	0	0	NA	1.66E-08	1.777411379	1	0	0.222588621	2	0	0.777411379	unphased	0.530878271	0.682879471	0.777411379	0.00625	0.99375	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214074460	14	33328415	A	G	-	-	-	-	-	-	22	0	0	50	20	40	0	0	NA	0	0	NA	3.90E-33	1.764536825	1	0	0.235463175	2	0	0.764536825	unphased	1.723996548	0.977024976	1.764536825	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214074974	14	41785404	A	G	-	-	-	-	-	-	39	0	0	40	12	30	0	0	NA	0	0	NA	1.20E-18	1.764536825	1	0	0.235463175	2	0	0.764536825	unphased	1.292997411	1.292997411	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214075099	14	43706077	A	G	-	-	-	-	-	-	32	0	0	49	24	48.97959184	0	0	NA	0	0	NA	3.34E-42	1.764536825	1	0	0.235463175	2	0	0.764536825	unphased	2.111016181	1.196357113	1.764536825	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214075162	14	44764013	A	G	-	-	-	-	-	-	41	0	0	59	21	35.59322034	0	0	NA	0	0	NA	2.06E-33	1.764536825	1	0	0.235463175	2	0	0.764536825	unphased	1.534064725	0.869386631	1.764536825	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214075166	14	44908413	C	G	-	-	-	-	-	-	30	0	0	53	19	35.8490566	0	0	NA	0	0	NA	1.93E-30	1.764536825	1	0	0.235463175	2	0	0.764536825	unphased	1.545091246	0.875635591	1.764536825	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214076264	14	65780391	C	G	-	-	-	-	-	-	15	0	0	45	18	40	0	0	NA	0	0	NA	5.76E-30	1.764536825	1	0	0.235463175	2	0	0.764536825	unphased	1.723996548	0.977024976	1.764536825	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214076629	14	73240152	A	G	DPF3	CCDS45133.1	r.?	-	-	intronic	28	0	0	48	13	27.08333333	0	0	NA	0	0	NA	2.00E-19	2.092087904	2	0	0.907912096	2	1	0.092087904	unphased	1.25600108	1.25600108	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214077288	14	85105896	C	G	-	-	-	-	-	-	40	0	0	61	7	11.47540984	154	0	0	114	13	11.40350877	2.69E-08	2.092087904	2	0	0.907912096	2	1	0.092087904	unphased	0.532177002	0.532177002	1	0.05125	0.94875	0	2	1	3.31E-14	1	YES	1_1	somatic	custom.pulldown.HiSeq
1352322	PD9768b	1214077394	14	87051184	A	G	-	-	-	-	-	-	27	0	0	37	6	16.21621622	0	0	NA	0	0	NA	3.18E-08	2.092087904	2	0	0.907912096	2	1	0.092087904	unphased	0.752033911	0.752033911	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214077433	14	87814583	A	G	-	-	-	-	-	-	31	0	0	47	11	23.40425532	0	0	NA	0	0	NA	7.21E-16	2.092087904	2	0	0.907912096	2	1	0.092087904	unphased	1.085382275	1.085382275	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214077816	14	94586910	C	G	IFI27	CCDS32148.1	r.?	-	-	downstream	34	0	0	61	10	16.39344262	0	0	NA	0	0	NA	6.98E-13	2.092087904	2	0	0.907912096	2	1	0.092087904	unphased	0.760252861	0.760252861	1	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214077838	14	95112007	C	G	-	-	-	-	-	-	35	0	0	56	23	41.07142857	0	0	NA	0	0	NA	3.22E-38	2.092087904	2	0	0.907912096	2	1	0.092087904	unphased	1.904704935	0.99831902	1.907912096	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214077927	14	96672377	C	G	BDKRB2	CCDS9942.1	r.?	-	-	intronic	7	0	0	39	4	10.25641026	0	0	NA	0	0	NA	4.47E-05	2.092087904	2	0	0.907912096	2	1	0.092087904	unphased	0.475645379	0.475645379	1	0.04625	0.95375	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214078142	14	101804179	A	G	-	-	-	-	-	-	38	0	0	60	26	43.33333333	0	0	NA	0	0	NA	8.84E-44	2.092087904	2	0	0.907912096	2	1	0.092087904	unphased	2.009601728	1.004800864	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214079717	15	23067907	T	G	NIPA1	CCDS10011.1	r.?	-	-	intronic	16	0	0	59	9	15.25423729	0	0	NA	0	0	NA	1.96E-11	2	1	1	1	NA	NA	NA	unphased	0.693374422	0.693374422	1	0.0075	0.9925	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214080029	15	27939699	C	G	-	-	-	-	-	-	29	0	0	46	9	19.56521739	0	0	NA	0	0	NA	1.82E-12	2	1	1	1	NA	NA	NA	unphased	0.889328063	0.889328063	1	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214080294	15	32806761	A	G	-	-	-	-	-	-	12	0	0	57	8	14.03508772	0	0	NA	0	0	NA	5.19E-10	2	1	1	1	NA	NA	NA	unphased	0.637958533	0.637958533	1	0.0125	0.9875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214080821	15	42593014	C	G	GANC	CCDS10084.1	r.?	-	-	intronic	25	0	0	63	11	17.46031746	0	0	NA	0	0	NA	2.37E-14	2	1	1	1	NA	NA	NA	unphased	0.793650794	0.793650794	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214081381	15	53712204	C	G	-	-	-	-	-	-	35	0	0	50	12	24	0	0	NA	0	0	NA	2.49E-17	2	1	1	1	NA	NA	NA	unphased	1.090909091	1.090909091	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214081410	15	54503528	A	G	UNC13C	CCDS45264.1	r.?	-	-	intronic	31	0	0	59	11	18.6440678	0	0	NA	0	0	NA	1.10E-14	2	1	1	1	NA	NA	NA	unphased	0.847457627	0.847457627	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214081720	15	60912259	C	G	RORA	CCDS10177.1	r.?	-	-	intronic	33	0	0	61	20	32.78688525	0	0	NA	0	0	NA	4.89E-31	2	1	1	1	NA	NA	NA	unphased	1.490312966	1.490312966	1	0	0.99	0.01	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214082165	15	68710227	C	G	ITGA11	CCDS45291.1	r.?	-	-	intronic	44	0	0	70	9	12.85714286	0	0	NA	0	0	NA	9.65E-11	2	1	1	1	NA	NA	NA	unphased	0.584415584	0.584415584	1	0.02625	0.97375	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214082579	15	76777004	T	G	SCAPER	ENST00000303521	r.?	-	-	intronic	22	0	0	54	11	20.37037037	0	0	NA	0	0	NA	3.84E-15	2	1	1	1	NA	NA	NA	unphased	0.925925926	0.925925926	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214083112	15	87819783	A	G	-	-	-	-	-	-	26	0	0	52	7	13.46153846	0	0	NA	0	0	NA	8.58E-09	2	1	1	1	NA	NA	NA	unphased	0.611888112	0.611888112	1	0.0175	0.9825	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214083284	15	90949490	C	G	IQGAP1	CCDS10362.1	r.?	-	-	intronic	35	0	0	57	17	29.8245614	0	0	NA	0	0	NA	8.82E-26	2	1	1	1	NA	NA	NA	unphased	1.355661882	1.355661882	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214083496	15	95721694	T	G	-	-	-	-	-	-	15	0	0	33	10	30.3030303	0	0	NA	0	0	NA	8.14E-16	2	1	1	1	NA	NA	NA	unphased	1.377410468	1.377410468	1	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214083565	15	97217579	A	G	-	-	-	-	-	-	45	0	0	50	13	26	0	0	NA	0	0	NA	3.65E-19	2	1	1	1	NA	NA	NA	unphased	1.181818182	1.181818182	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214084139	16	3834342	T	G	CREBBP	CCDS10509.1	r.?	-	-	intronic	31	0	0	76	17	22.36842105	0	0	NA	0	0	NA	2.21E-23	5.787524616	3	2	0.212475384	3	3	0.787524616	unphased	1.863955865	0.931977933	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214084233	16	5010355	T	G	SEC14L5	CCDS45403.1	r.?	-	-	intronic	30	0	0	52	11	21.15384615	0	0	NA	0	0	NA	2.44E-15	5.787524616	3	2	0.212475384	3	3	0.787524616	unphased	1.762745592	0.881372796	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214084392	16	6719463	T	G	-	-	-	-	-	-	35	0	0	69	22	31.88405797	0	0	NA	0	0	NA	1.12E-33	3.500213656	2	1	0.499786344	2	2	0.500213656	unphased	1.927604354	0.963802177	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214084475	16	7405846	C	G	ENSG00000078328	CCDS45405.1	r.?	-	-	intronic	33	0	0	74	19	25.67567568	0	0	NA	0	0	NA	3.14E-27	3.500213656	2	1	0.499786344	2	2	0.500213656	unphased	1.55226616	1.034991528	1.499786344	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214084514	16	7894153	C	G	-	-	-	-	-	-	24	0	0	75	26	34.66666667	0	0	NA	0	0	NA	1.19E-40	3.500213656	2	1	0.499786344	2	2	0.500213656	unphased	2.095831643	1.047915822	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214084536	16	8159458	C	G	-	-	-	-	-	-	27	0	0	62	5	8.064516129	0	0	NA	0	0	NA	1.60E-05	3.500213656	2	1	0.499786344	2	2	0.500213656	unphased	0.487553887	0.974691277	0.500213656	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214084676	16	9709718	C	G	-	-	-	-	-	-	38	0	0	65	20	30.76923077	0	0	NA	0	0	NA	2.18E-30	3.500213656	2	1	0.499786344	2	2	0.500213656	unphased	1.860205601	0.9301028	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214085198	16	15718757	A	G	KIAA0430	CCDS10562.2	r.2346u>c	c.2139T>C	p.V713V	silent	22	0	0	68	26	38.23529412	190	0	0	185	52	28.10810811	5.33E-42	3.500213656	2	1	0.499786344	2	2	0.500213656	unphased	2.311579018	1.155789509	2	0	1	0	2	1	3.97E-74	1	YES	1_1	somatic	custom.pulldown.HiSeq
1352322	PD9768b	1214085329	16	17475870	T	G	XYLT1	CCDS10569.1	r.?	-	-	intronic	28	0	0	60	16	26.66666667	0	0	NA	0	0	NA	1.86E-23	3.500213656	2	1	0.499786344	2	2	0.500213656	unphased	1.612178187	1.07493857	1.499786344	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214085796	16	23175567	A	G	-	-	-	-	-	-	29	0	0	64	9	14.0625	0	0	NA	0	0	NA	4.20E-11	1	1	0	1	NA	NA	NA	unphased	0.498579545	0.498579545	1	0.18125	0.81875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214085876	16	24352025	C	G	CACNG3	CCDS10620.1	r.?	-	-	intronic	22	0	0	60	11	18.33333333	0	0	NA	0	0	NA	1.34E-14	1	1	0	1	NA	NA	NA	unphased	0.65	0.65	1	0.02125	0.97875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214090612	16	47387085	C	G	ITFG1	CCDS10728.1	r.?	-	-	intronic	33	0	0	57	5	8.771929825	0	0	NA	0	0	NA	1.05E-05	1.755790266	1	0	0.244209734	2	0	0.755790266	unphased	0.377302176	0.499215448	0.755790266	0.0475	0.9525	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214090813	16	51803310	T	G	-	-	-	-	-	-	33	0	0	61	12	19.67213115	0	0	NA	0	0	NA	3.39E-16	1.755790266	1	0	0.244209734	2	0	0.755790266	unphased	0.84614652	1.119552022	0.755790266	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214091346	16	59293731	A	G	-	-	-	-	-	-	9	0	0	20	5	25	0	0	NA	0	0	NA	4.55E-08	3.175765079	2	1	0.824234921	2	2	0.175765079	unphased	1.430304906	1.430304906	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214091483	16	61743040	A	G	CDH8	CCDS10802.1	r.?	-	-	intronic	38	0	0	57	23	40.35087719	0	0	NA	0	0	NA	5.38E-38	3.175765079	2	1	0.824234921	2	2	0.175765079	unphased	2.308562305	1.154281152	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214091489	16	61866189	A	G	CDH8	CCDS10802.1	r.?	-	-	intronic	40	0	0	62	20	32.25806452	0	0	NA	0	0	NA	7.19E-31	3.175765079	2	1	0.824234921	2	2	0.175765079	unphased	1.845554718	1.01168698	1.824234921	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214091618	16	63918676	C	G	-	-	-	-	-	-	37	0	0	54	19	35.18518519	0	0	NA	0	0	NA	2.97E-30	3.175765079	2	1	0.824234921	2	2	0.175765079	unphased	2.01302172	1.00651086	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214092020	16	69850730	A	G	WWP2	CCDS10885.1	r.?	-	-	intronic	32	0	0	65	10	15.38461538	0	0	NA	0	0	NA	1.36E-12	3.175765079	2	1	0.824234921	2	2	0.175765079	unphased	0.880187635	0.880187635	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214092187	16	71304774	A	G	-	-	-	-	-	-	46	0	0	76	19	25	0	0	NA	0	0	NA	5.56E-27	3.175765079	2	1	0.824234921	2	2	0.175765079	unphased	1.430304906	1.430304906	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214092393	16	74122174	A	G	-	-	-	-	-	-	33	0	0	75	16	21.33333333	0	0	NA	0	0	NA	9.88E-22	3.175765079	2	1	0.824234921	2	2	0.175765079	unphased	1.220526853	1.220526853	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214092559	16	75890260	T	G	-	-	-	-	-	-	20	0	0	65	27	41.53846154	0	0	NA	0	0	NA	8.98E-45	3.175765079	2	1	0.824234921	2	2	0.175765079	unphased	2.376506613	1.188253307	2	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214093199	16	84696430	C	G	KLHL36	CCDS10948.1	r.2707c>g	c.?	p.?	3'UTR variant	30	0	0	65	23	35.38461538	0	0	NA	0	0	NA	2.21E-36	3.175765079	2	1	0.824234921	2	2	0.175765079	unphased	2.024431559	1.01221578	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214093297	16	86008908	C	G	-	-	-	-	-	-	39	0	0	102	25	24.50980392	0	0	NA	0	0	NA	8.78E-35	3.175765079	2	1	0.824234921	2	2	0.175765079	unphased	1.402259712	0.768683735	1.824234921	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214093952	17	986168	A	G	ABR	CCDS10999.1	r.?	-	-	intronic	7	0	0	65	19	29.23076923	0	0	NA	0	0	NA	1.89E-28	7	4	3	1	NA	NA	NA	unphased	2.79020979	0.93006993	3	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214094066	17	1562328	A	G	PRPF8	CCDS11010.1	r.?	-	-	intronic	10	0	0	89	10	11.23595506	0	0	NA	0	0	NA	3.47E-11	7	4	3	1	NA	NA	NA	unphased	1.072522983	1.072522983	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214094285	17	3129175	A	G	-	-	-	-	-	-	25	0	0	70	25	35.71428571	0	0	NA	0	0	NA	1.55E-39	7	4	3	1	NA	NA	NA	unphased	3.409090909	1.136363636	3	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214094469	17	4563583	A	G	-	-	-	-	-	-	10	0	0	77	35	45.45454545	0	0	NA	0	0	NA	2.37E-59	7	4	3	1	NA	NA	NA	unphased	4.338842975	1.084710744	4	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214094470	17	4563587	A	G	-	-	-	-	-	-	7	0	0	76	36	47.36842105	0	0	NA	0	0	NA	7.44E-62	7	4	3	1	NA	NA	NA	unphased	4.5215311	1.130382775	4	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214094534	17	5038486	A	G	USP6	CCDS11069.2	r.?	-	-	intronic	24	0	0	72	23	31.94444444	0	0	NA	0	0	NA	3.67E-35	3	2	1	1	NA	NA	NA	unphased	1.771464646	0.885732323	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214094637	17	5998295	C	G	WSCD1	CCDS32538.1	r.?	-	-	intronic	19	0	0	61	12	19.67213115	0	0	NA	0	0	NA	3.39E-16	3	2	1	1	NA	NA	NA	unphased	1.090909091	1.090909091	1	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214094834	17	8497653	A	G	MYH10	CCDS11144.1	r.?	-	-	intronic	27	0	0	61	11	18.03278689	0	0	NA	0	0	NA	1.62E-14	3	2	1	1	NA	NA	NA	unphased	1	1	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214094957	17	9787055	C	G	GLP2R	CCDS11150.1	r.?	-	-	intronic	34	0	0	62	12	19.35483871	0	0	NA	0	0	NA	4.19E-16	3	2	1	1	NA	NA	NA	unphased	1.073313783	1.073313783	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214095352	17	14928860	C	G	-	-	-	-	-	-	32	0	0	66	19	28.78787879	0	0	NA	0	0	NA	2.64E-28	3	2	1	1	NA	NA	NA	unphased	1.596418733	0.798209366	2	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214095643	17	18189439	A	G	TOP3A	CCDS11194.1	r.?	-	-	intronic	12	0	0	73	12	16.43835616	0	0	NA	0	0	NA	3.39E-15	3	2	1	1	NA	NA	NA	unphased	0.911581569	0.911581569	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214095719	17	18967362	C	G	SNORD3B-1	ENST00000363359	r.?	-	-	downstream	11	0	0	18	4	22.22222222	0	0	NA	0	0	NA	1.81E-06	3	2	1	1	NA	NA	NA	unphased	1.232323232	1.232323232	1	0.00125	0.995	0.00375	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214097839	17	29352336	C	G	-	-	-	-	-	-	16	0	0	34	9	26.47058824	0	0	NA	0	0	NA	9.15E-14	3	2	1	1	NA	NA	NA	unphased	1.467914439	1.467914439	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214098149	17	34842467	A	G	ZNHIT3	CCDS11312.1	r.?	-	-	upstream	7	0	0	46	19	41.30434783	0	0	NA	0	0	NA	6.97E-32	2.076017236	2	0	0.923982764	2	1	0.076017236	unphased	1.908868779	0.992144429	1.923982764	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214098579	17	42012061	C	G	-	-	-	-	-	-	26	0	0	56	24	42.85714286	0	0	NA	0	0	NA	2.23E-40	2.076017236	2	0	0.923982764	2	1	0.076017236	unphased	1.980630764	0.990315382	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214099097	17	47134390	T	G	IGF2BP1	CCDS11543.1	r.?	-	-	downstream	13	0	0	42	12	28.57142857	0	0	NA	0	0	NA	2.35E-18	2.076017236	2	0	0.923982764	2	1	0.076017236	unphased	1.320420509	1.320420509	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214099316	17	50742076	C	G	-	-	-	-	-	-	40	0	0	47	6	12.76595745	189	0	0	166	37	22.28915663	1.41E-07	2.076017236	2	0	0.923982764	2	1	0.076017236	unphased	0.589975121	0.589975121	1	0.01875	0.98125	0	2	1	5.10E-49	1	YES	1_1	somatic	custom.pulldown.HiSeq
1352322	PD9768b	1214099824	17	59795221	C	G	BRIP1	CCDS11631.1	r.?	-	-	intronic	32	0	0	55	6	10.90909091	0	0	NA	0	0	NA	3.67E-07	2.076017236	2	0	0.923982764	2	1	0.076017236	unphased	0.504160558	0.504160558	1	0.05625	0.94375	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214100393	17	67958177	A	G	-	-	-	-	-	-	21	0	0	61	25	40.98360656	0	0	NA	0	0	NA	2.20E-41	2.076017236	2	0	0.923982764	2	1	0.076017236	unphased	1.894045812	0.984440115	1.923982764	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214101680	18	7259818	A	G	-	-	-	-	-	-	29	0	0	58	25	43.10344828	0	0	NA	0	0	NA	4.44E-42	2	2	0	1	NA	NA	NA	unphased	1.959247649	0.979623824	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214101699	18	7782455	A	G	PTPRM	CCDS11840.1	r.?	-	-	intronic	39	0	0	60	24	40	0	0	NA	0	0	NA	1.81E-39	2	2	0	1	NA	NA	NA	unphased	1.818181818	0.909090909	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214102046	18	13474792	A	G	C18orf1	CCDS32793.1	r.?	-	-	intronic	16	0	0	49	17	34.69387755	0	0	NA	0	0	NA	4.26E-27	5	4	1	1	NA	NA	NA	unphased	2.617810761	0.872603587	3	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214102362	18	14776213	C	G	ENSG00000180777	ENST00000320584	r.?	-	-	intronic	27	0	0	53	13	24.52830189	0	0	NA	0	0	NA	8.53E-19	5	4	1	1	NA	NA	NA	unphased	1.85077187	0.925385935	2	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214103292	18	19403100	C	G	MIB1	CCDS11871.1	r.?	-	-	intronic	32	0	0	114	8	7.01754386	0	0	NA	0	0	NA	1.34E-07	5	4	1	1	NA	NA	NA	unphased	0.529505582	0.529505582	1	0.06875	0.93125	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214103311	18	19487394	C	G	-	-	-	-	-	-	23	0	0	132	24	18.18181818	0	0	NA	0	0	NA	4.82E-30	5	4	1	1	NA	NA	NA	unphased	1.371900826	1.371900826	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214103676	18	21272929	A	G	LAMA3	CCDS42419.1	r.?	-	-	intronic	22	0	0	145	10	6.896551724	0	0	NA	0	0	NA	4.36E-09	5	4	1	1	NA	NA	NA	unphased	0.520376176	0.520376176	1	0.10125	0.89875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214104156	18	23899813	C	G	TAF4B	CCDS42421.1	r.?	-	-	intronic	34	0	0	105	21	20	0	0	NA	0	0	NA	2.04E-27	5	4	1	1	NA	NA	NA	unphased	1.509090909	0.754545455	2	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214104182	18	24007365	C	G	-	-	-	-	-	-	32	0	0	114	11	9.649122807	0	0	NA	0	0	NA	1.96E-11	5	4	1	1	NA	NA	NA	unphased	0.728070175	0.728070175	1	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214104346	18	25191910	C	G	-	-	-	-	-	-	36	0	0	108	18	16.66666667	0	0	NA	0	0	NA	3.47E-22	5	4	1	1	NA	NA	NA	unphased	1.257575758	1.257575758	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214104638	18	27156086	T	G	-	-	-	-	-	-	39	0	0	124	14	11.29032258	0	0	NA	0	0	NA	3.97E-15	5	4	1	1	NA	NA	NA	unphased	0.851906158	0.851906158	1	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214104720	18	27587238	T	G	-	-	-	-	-	-	35	0	0	99	5	5.050505051	0	0	NA	0	0	NA	0.000151292	5	4	1	1	NA	NA	NA	unphased	0.381083563	0.381083563	1	0.19875	0.80125	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214105310	18	31681878	A	G	NOL4	CCDS11907.2	r.?	-	-	intronic	40	0	0	114	22	19.29824561	0	0	NA	0	0	NA	2.79E-28	5	4	1	1	NA	NA	NA	unphased	1.456140351	0.728070175	2	0.005	0.995	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214105332	18	31822188	A	G	-	-	-	-	-	-	29	0	0	97	6	6.18556701	0	0	NA	0	0	NA	1.05E-05	5	4	1	1	NA	NA	NA	unphased	0.466729147	0.466729147	1	0.06875	0.93125	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214105356	18	32085386	A	G	DTNA	CCDS45848.1	r.?	-	-	intronic	43	0	0	126	6	4.761904762	0	0	NA	0	0	NA	4.61E-05	5	4	1	1	NA	NA	NA	unphased	0.359307359	0.359307359	1	0.4725	0.5275	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214105545	18	33425348	C	G	-	-	-	-	-	-	31	0	0	126	12	9.523809524	0	0	NA	0	0	NA	2.81E-12	5	4	1	1	NA	NA	NA	unphased	0.718614719	0.718614719	1	0.00375	0.99625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214105670	18	34173695	T	G	FHOD3	CCDS32816.1	r.?	-	-	intronic	20	1	5	84	15	17.85714286	0	0	NA	0	0	NA	3.27E-19	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	1.402012399	1.402012399	1	0	0.9975	0.0025	2	0.09538952	1	1	NA	NA	NA	NA
1352322	PD9768b	1214105788	18	35277381	C	G	-	-	-	-	-	-	25	0	0	95	5	5.263157895	0	0	NA	0	0	NA	0.000124602	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	0.413224707	1.351224943	0.30581489	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214106107	18	37847086	C	G	-	-	-	-	-	-	28	0	0	107	10	9.345794393	0	0	NA	0	0	NA	2.21E-10	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	0.733763499	0.733763499	1	0.00375	0.99625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214106316	18	39499657	A	G	-	-	-	-	-	-	34	0	0	102	12	11.76470588	0	0	NA	0	0	NA	2.18E-13	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	0.923678757	0.923678757	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214106435	18	40479216	A	G	RIT2	CCDS11921.1	r.?	-	-	intronic	29	0	0	95	8	8.421052632	0	0	NA	0	0	NA	3.23E-08	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	0.661159531	0.661159531	1	0.00625	0.99375	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214106550	18	41514205	T	G	-	-	-	-	-	-	35	0	0	104	9	8.653846154	95	0	0	211	16	7.582938389	3.50E-09	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	0.679436778	0.679436778	1	0.005	0.995	0	2	1	2.51E-14	1	YES	1_1	somatic	custom.pulldown.HiSeq
1352322	PD9768b	1214106945	18	44504768	T	G	-	-	-	-	-	-	31	0	0	101	21	20.79207921	0	0	NA	0	0	NA	8.38E-28	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	1.63244216	0.96355596	1.69418511	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214107191	18	46054385	A	G	-	-	-	-	-	-	26	0	0	118	20	16.94915254	0	0	NA	0	0	NA	1.22E-24	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	1.330723633	1.330723633	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214107578	18	48573285	T	G	SMAD4	CCDS11950.1	r.412-5u>g	c.?	p.?	splice region	35	0	0	94	18	19.14893617	107	0	0	280	51	18.21428571	2.40E-23	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	1.503434573	0.88740868	1.69418511	0	0.99875	0.00125	2	1	4.62E-62	1	YES	1_1	somatic	custom.pulldown.HiSeq
1352322	PD9768b	1214107704	18	49516221	C	G	-	-	-	-	-	-	37	0	0	86	6	6.976744186	0	0	NA	0	0	NA	5.22E-06	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	0.547762984	0.547762984	1	0.02625	0.97375	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214107964	18	50990947	T	G	DCC	CCDS11952.1	r.?	-	-	intronic	28	0	0	105	9	8.571428571	0	0	NA	0	0	NA	3.81E-09	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	0.672965952	0.672965952	1	0.0125	0.9875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214108258	18	53121463	C	G	TCF4	CCDS42438.1	r.?	-	-	intronic	34	0	0	122	15	12.29508197	0	0	NA	0	0	NA	1.14E-16	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	0.965320013	0.965320013	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214108448	18	54637315	C	G	WDR7	CCDS11962.1	r.?	-	-	intronic	33	0	0	92	11	11.95652174	0	0	NA	0	0	NA	1.81E-12	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	0.938738737	0.938738737	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214108688	18	56135936	C	G	-	-	-	-	-	-	32	0	0	101	14	13.86138614	0	0	NA	0	0	NA	2.08E-16	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	1.088294773	1.088294773	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214108859	18	57311755	C	G	CCBE1	CCDS32838.1	r.?	-	-	intronic	26	0	0	104	24	23.07692308	0	0	NA	0	0	NA	9.41E-33	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	1.811831408	1.06944123	1.69418511	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214108962	18	58170306	A	G	-	-	-	-	-	-	36	0	0	79	17	21.51898734	0	0	NA	0	0	NA	4.55E-23	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	1.689513676	0.997242666	1.69418511	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214109450	18	61192837	T	G	-	-	-	-	-	-	33	0	0	108	55	50.92592593	0	0	NA	0	0	NA	5.22E-96	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	3.998331657	0.999582914	4	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214109605	18	62618030	A	G	-	-	-	-	-	-	28	0	0	95	9	9.473684211	0	0	NA	0	0	NA	1.56E-09	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	0.743804473	0.743804473	1	0.00375	0.99625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214109934	18	64948881	T	G	-	-	-	-	-	-	24	0	0	102	23	22.54901961	0	0	NA	0	0	NA	3.39E-31	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	1.770384284	1.044976888	1.69418511	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214110590	18	69222354	T	G	-	-	-	-	-	-	32	0	0	121	10	8.26446281	0	0	NA	0	0	NA	7.46E-10	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	0.648865243	0.648865243	1	0.0075	0.9925	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214110674	18	69779780	A	G	-	-	-	-	-	-	21	0	0	102	25	24.50980392	0	0	NA	0	0	NA	8.78E-35	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	1.924330744	0.962165372	2	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214110781	18	70570501	A	G	-	-	-	-	-	-	24	0	0	112	7	6.25	0	0	NA	0	0	NA	1.79E-06	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	0.49070434	0.49070434	1	0.0775	0.9225	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214110824	18	70855752	T	G	-	-	-	-	-	-	30	0	0	89	5	5.617977528	0	0	NA	0	0	NA	9.15E-05	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	0.441082553	1.442318759	0.30581489	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214111454	18	75004365	T	G	-	-	-	-	-	-	31	0	0	100	14	14	0	0	NA	0	0	NA	1.80E-16	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	1.099177721	1.099177721	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214111456	18	75020467	C	G	-	-	-	-	-	-	34	0	0	111	8	7.207207207	0	0	NA	0	0	NA	1.09E-07	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	0.565857257	0.565857257	1	0.0275	0.9725	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214112694	19	8821119	T	G	-	-	-	-	-	-	14	0	0	51	9	17.64705882	0	0	NA	0	0	NA	4.92E-12	5	4	1	1	NA	NA	NA	unphased	1.331550802	1.331550802	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214112707	19	8899733	A	G	-	-	-	-	-	-	31	0	0	84	19	22.61904762	0	0	NA	0	0	NA	4.62E-26	6	3	3	1	NA	NA	NA	unphased	1.932900433	0.966450216	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214112982	19	10951231	T	G	TMED1	CCDS12249.1	r.?	-	-	upstream	21	0	0	67	4	5.970149254	0	0	NA	0	0	NA	0.000372648	6	3	3	1	NA	NA	NA	unphased	0.510176391	0.510176391	1	0.01125	0.98875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214113887	19	17805538	T	G	-	-	-	-	-	-	10	0	0	68	7	10.29411765	0	0	NA	0	0	NA	5.80E-08	4.455748631	2	2	0.544251369	3	2	0.455748631	unphased	0.720712092	0.720712092	1	0.01	0.99	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214114029	19	19112318	T	G	SFRS14	CCDS12392.1	r.?	-	-	intronic	14	0	0	82	31	37.80487805	0	0	NA	0	0	NA	1.35E-49	4.455748631	2	2	0.544251369	3	2	0.455748631	unphased	2.646796323	1.07779611	2.455748631	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214114420	19	21846457	A	G	AC092364.2	ENST00000504760	r.?	-	-	intronic	21	0	0	92	12	13.04347826	0	0	NA	0	0	NA	6.12E-14	4.455748631	2	2	0.544251369	3	2	0.455748631	unphased	0.913200414	0.913200414	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214114814	19	24135738	C	G	AC011503.1	ENST00000300996	r.?	-	-	intronic	28	0	0	74	8	10.81081081	0	0	NA	0	0	NA	4.39E-09	4.455748631	2	2	0.544251369	3	2	0.455748631	unphased	0.75688683	0.75688683	1	0.00375	0.99625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214114815	19	24137690	A	G	AC011503.1	ENST00000300996	r.?	-	-	intronic	36	0	0	80	18	22.5	0	0	NA	0	0	NA	1.01E-24	4.455748631	2	2	0.544251369	3	2	0.455748631	unphased	1.575270715	1.082103518	1.455748631	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214115778	19	31240153	A	G	-	-	-	-	-	-	39	0	0	93	24	25.80645161	0	0	NA	0	0	NA	4.66E-34	5	3	2	1	NA	NA	NA	unphased	1.947214076	0.973607038	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214116254	19	35259048	C	G	ZNF599	CCDS32991.1	r.?	-	-	intronic	42	0	0	79	26	32.91139241	0	0	NA	0	0	NA	5.99E-40	3	3	0	1	NA	NA	NA	unphased	1.825086306	0.912543153	2	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214116504	19	37944878	C	G	ZNF569	CCDS12503.1	r.?	-	-	intronic	36	0	0	87	15	17.24137931	0	0	NA	0	0	NA	5.73E-19	3	3	0	1	NA	NA	NA	unphased	0.956112853	0.956112853	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214116619	19	39172875	C	G	ACTN4	CCDS12518.1	r.?	-	-	intronic	16	0	0	64	8	12.5	0	0	NA	0	0	NA	1.35E-09	3	3	0	1	NA	NA	NA	unphased	0.693181818	0.693181818	1	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214118283	19	49963639	C	G	ALDH16A1	CCDS12766.1	r.?	-	-	intronic	20	0	0	42	16	38.0952381	0	0	NA	0	0	NA	2.25E-26	3.161750156	3	0	0.838249844	3	1	0.161750156	unphased	2.17417322	1.08708661	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214118663	19	54110799	A	G	ENSG00000188666	ENST00000342791	r.?	-	-	upstream	29	0	0	58	31	53.44827586	0	0	NA	0	0	NA	1.07E-55	3.161750156	3	0	0.838249844	3	1	0.161750156	unphased	3.050402513	1.016800838	3	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214119502	19	58760430	T	G	ZNF544	CCDS12973.1	r.?	-	-	intronic	32	0	0	90	6	6.666666667	0	0	NA	0	0	NA	6.79E-06	4.211727166	4	0	0.788272834	4	1	0.211727166	unphased	0.450478781	0.450478781	1	0.12125	0.87875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214120004	2	3917529	A	G	-	-	-	-	-	-	29	0	0	85	30	35.29411765	0	0	NA	0	0	NA	5.97E-47	4	2	2	1	NA	NA	NA	unphased	2.310160428	1.155080214	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214120208	2	6056573	A	G	-	-	-	-	-	-	29	0	0	79	18	22.78481013	0	0	NA	0	0	NA	7.86E-25	4	2	2	1	NA	NA	NA	unphased	1.49136939	0.745684695	2	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214120501	2	9724120	C	G	YWHAQ	CCDS1666.1	r.2197g>c	c.?	p.?	3'UTR variant	29	0	0	85	8	9.411764706	0	0	NA	0	0	NA	1.34E-08	4	2	2	1	NA	NA	NA	unphased	0.616042781	0.616042781	1	0.0175	0.9825	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214121741	2	24832746	T	G	NCOA1	CCDS1713.1	r.?	-	-	intronic	28	0	0	88	27	30.68181818	0	0	NA	0	0	NA	1.86E-40	4	2	2	1	NA	NA	NA	unphased	2.008264463	1.004132231	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214122316	2	30428475	A	G	-	-	-	-	-	-	41	0	0	71	26	36.61971831	0	0	NA	0	0	NA	2.11E-41	3	2	1	1	NA	NA	NA	unphased	2.030729834	1.015364917	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214122424	2	32343581	T	G	SPAST	CCDS1778.1	r.?	-	-	intronic	35	0	0	69	24	34.7826087	0	0	NA	0	0	NA	1.11E-37	3	2	1	1	NA	NA	NA	unphased	1.928853755	0.964426877	2	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214122601	2	34389026	T	G	-	-	-	-	-	-	23	0	0	55	11	20	0	0	NA	0	0	NA	4.77E-15	3	2	1	1	NA	NA	NA	unphased	1.109090909	1.109090909	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214122718	2	36164012	C	G	-	-	-	-	-	-	30	0	0	57	26	45.61403509	0	0	NA	0	0	NA	1.57E-44	3	2	1	1	NA	NA	NA	unphased	2.529505582	1.264752791	2	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214123725	2	50094058	A	G	-	-	-	-	-	-	44	0	0	52	12	23.07692308	0	0	NA	0	0	NA	4.19E-17	3	2	1	1	NA	NA	NA	unphased	1.27972028	1.27972028	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214123776	2	51328184	C	G	-	-	-	-	-	-	26	0	0	72	21	29.16666667	1	0	0	0	0	NA	2.89E-31	3	2	1	1	NA	NA	NA	unphased	1.617424242	0.808712121	2	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214123882	2	53268464	T	G	-	-	-	-	-	-	36	0	0	64	17	26.5625	0	0	NA	0	0	NA	8.43E-25	3	2	1	1	NA	NA	NA	unphased	1.473011364	1.473011364	1	0	0.995	0.005	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214123919	2	54097584	C	G	PSME4	CCDS33197.2	r.?	-	-	intronic	20	0	0	33	8	24.24242424	0	0	NA	0	0	NA	4.85E-12	3	2	1	1	NA	NA	NA	unphased	1.344352617	1.344352617	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214124484	2	62620174	C	G	-	-	-	-	-	-	22	0	0	70	25	35.71428571	0	0	NA	0	0	NA	1.55E-39	3	2	1	1	NA	NA	NA	unphased	1.980519481	0.99025974	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214125368	2	77229696	T	G	LRRTM4	CCDS46346.1	r.?	-	-	intronic	41	0	0	57	9	15.78947368	0	0	NA	0	0	NA	1.42E-11	3	2	1	1	NA	NA	NA	unphased	0.875598086	0.875598086	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214125475	2	79350935	T	G	REG1A	CCDS1964.1	r.?	-	-	downstream	44	0	0	78	15	19.23076923	0	0	NA	0	0	NA	9.92E-20	3	2	1	1	NA	NA	NA	unphased	1.066433566	1.066433566	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214125673	2	82817902	C	G	-	-	-	-	-	-	38	0	0	52	4	7.692307692	0	0	NA	0	0	NA	0.000139698	3	2	1	1	NA	NA	NA	unphased	0.426573427	0.426573427	1	0.05875	0.94125	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214126086	2	88463092	C	G	-	-	-	-	-	-	35	0	0	66	11	16.66666667	0	0	NA	0	0	NA	4.07E-14	3	2	1	1	NA	NA	NA	unphased	0.924242424	0.924242424	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214127625	2	92066602	C	G	-	-	-	-	-	-	32	0	0	90	6	6.666666667	0	0	NA	0	0	NA	6.79E-06	3	2	1	1	NA	NA	NA	unphased	0.36969697	0.36969697	1	0.44625	0.55375	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214129114	2	100308068	A	G	AFF3	CCDS42723.1	r.?	-	-	intronic	37	0	0	64	17	26.5625	0	0	NA	0	0	NA	8.43E-25	3	2	1	1	NA	NA	NA	unphased	1.473011364	1.473011364	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214129365	2	104689186	A	G	-	-	-	-	-	-	33	0	0	61	30	49.18032787	0	0	NA	0	0	NA	1.86E-52	3	2	1	1	NA	NA	NA	unphased	2.727272727	1.363636364	2	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214130162	2	115173693	C	G	-	-	-	-	-	-	22	0	0	64	15	23.4375	0	0	NA	0	0	NA	3.87E-21	3	2	1	1	NA	NA	NA	unphased	1.299715909	1.299715909	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214130927	2	126223129	A	G	-	-	-	-	-	-	41	0	0	57	9	15.78947368	0	0	NA	0	0	NA	1.42E-11	3	2	1	1	NA	NA	NA	unphased	0.875598086	0.875598086	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214131183	2	130010628	C	G	-	-	-	-	-	-	15	0	0	51	8	15.68627451	0	0	NA	0	0	NA	2.05E-10	3	2	1	1	NA	NA	NA	unphased	0.869875223	0.869875223	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214131329	2	132077889	A	G	PLEKHB2	ENST00000404460	r.?	-	-	intronic	35	1	2.857142857	48	5	10.41666667	0	0	NA	0	0	NA	4.47E-06	3	2	1	1	NA	NA	NA	unphased	0.577651515	0.577651515	1	0.01375	0.98625	0	2	0.16091139	1	1	NA	NA	NA	NA
1352322	PD9768b	1214132560	2	133146591	T	G	-	-	-	-	-	-	35	0	0	55	5	9.090909091	0	0	NA	0	0	NA	8.83E-06	3	2	1	1	NA	NA	NA	unphased	0.504132231	0.504132231	1	0.0425	0.9575	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214132645	2	134379008	A	G	-	-	-	-	-	-	36	0	0	72	11	15.27777778	0	0	NA	0	0	NA	1.12E-13	3	2	1	1	NA	NA	NA	unphased	0.847222222	0.847222222	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214132848	2	137493355	C	G	-	-	-	-	-	-	39	0	0	56	17	30.35714286	0	0	NA	0	0	NA	6.22E-26	3	2	1	1	NA	NA	NA	unphased	1.683441558	0.841720779	2	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214132881	2	138107070	A	G	THSD7B	ENST00000409968	r.?	-	-	intronic	37	0	0	61	8	13.1147541	0	0	NA	0	0	NA	9.09E-10	3	2	1	1	NA	NA	NA	unphased	0.727272727	0.727272727	1	0.00625	0.99375	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214133002	2	140448403	A	G	-	-	-	-	-	-	32	0	0	56	14	25	0	0	NA	0	0	NA	2.91E-20	3	2	1	1	NA	NA	NA	unphased	1.386363636	1.386363636	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214133510	2	149177217	A	G	MBD5	CCDS33302.1	r.?	-	-	intronic	32	0	0	65	14	21.53846154	0	0	NA	0	0	NA	2.93E-19	3	2	1	1	NA	NA	NA	unphased	1.194405594	1.194405594	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214133814	2	153827359	A	G	-	-	-	-	-	-	36	0	0	56	17	30.35714286	0	0	NA	0	0	NA	6.22E-26	4	2	2	1	NA	NA	NA	unphased	1.987012987	0.993506494	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214133860	2	154723001	A	G	-	-	-	-	-	-	36	0	0	38	9	23.68421053	0	0	NA	0	0	NA	2.79E-13	3	2	1	1	NA	NA	NA	unphased	1.313397129	1.313397129	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214133929	2	155656172	C	G	KCNJ3	CCDS2200.1	r.?	-	-	intronic	29	0	0	53	19	35.8490566	0	0	NA	0	0	NA	1.93E-30	3	2	1	1	NA	NA	NA	unphased	1.987993139	0.993996569	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214133937	2	155812706	C	G	-	-	-	-	-	-	26	0	0	53	19	35.8490566	0	0	NA	0	0	NA	1.93E-30	3	2	1	1	NA	NA	NA	unphased	1.987993139	0.993996569	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214133939	2	155873094	C	G	-	-	-	-	-	-	36	0	0	61	25	40.98360656	0	0	NA	0	0	NA	2.20E-41	3	2	1	1	NA	NA	NA	unphased	2.272727273	1.136363636	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214134062	2	158368744	C	G	-	-	-	-	-	-	27	0	0	69	12	17.39130435	0	0	NA	0	0	NA	1.65E-15	3	2	1	1	NA	NA	NA	unphased	0.964426877	0.964426877	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214134661	2	168055953	A	G	XIRP2	CCDS42769.1	r.?	-	-	intronic	41	0	0	75	13	17.33333333	0	0	NA	0	0	NA	1.16E-16	4	2	2	1	NA	NA	NA	unphased	1.134545455	1.134545455	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214134738	2	169257484	A	G	-	-	-	-	-	-	31	0	0	66	19	28.78787879	0	0	NA	0	0	NA	2.64E-28	4	2	2	1	NA	NA	NA	unphased	1.884297521	0.94214876	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214134812	2	170382622	T	G	KBTBD10	CCDS2234.1	r.2314u>g	c.?	p.?	3'UTR variant	31	0	0	78	15	19.23076923	0	0	NA	0	0	NA	9.92E-20	4	2	2	1	NA	NA	NA	unphased	1.258741259	1.258741259	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214135202	2	173885336	A	G	RAPGEF4	CCDS42775.1	r.2299-10a>g	c.2156-10A>G	p.?	splice region	35	0	0	74	10	13.51351351	267	0	0	209	29	13.87559809	5.24E-12	4	2	2	1	NA	NA	NA	unphased	0.884520885	0.884520885	1	0.0025	0.9975	0	2	1	2.21E-32	1	YES	1_1	somatic	custom.pulldown.HiSeq
1352322	PD9768b	1214135373	2	176140614	A	G	-	-	-	-	-	-	43	0	0	88	17	19.31818182	0	0	NA	0	0	NA	3.34E-22	4	2	2	1	NA	NA	NA	unphased	1.26446281	1.26446281	1	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214135561	2	178403247	A	G	AGPS	CCDS2275.1	r.2447a>g	c.?	p.?	3'UTR variant	37	0	0	85	26	30.58823529	0	0	NA	0	0	NA	5.65E-39	4	2	2	1	NA	NA	NA	unphased	2.002139037	1.001069519	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214135870	2	182560895	T	G	-	-	-	-	-	-	35	0	0	78	20	25.64102564	0	0	NA	0	0	NA	1.43E-28	4	2	2	1	NA	NA	NA	unphased	1.678321678	0.839160839	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214136266	2	187881357	C	G	-	-	-	-	-	-	36	0	0	98	14	14.28571429	0	0	NA	0	0	NA	1.34E-16	4	2	2	1	NA	NA	NA	unphased	0.935064935	0.935064935	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214136318	2	188771765	T	G	-	-	-	-	-	-	25	0	0	68	11	16.17647059	0	0	NA	0	0	NA	5.76E-14	4	2	2	1	NA	NA	NA	unphased	1.058823529	1.058823529	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214136991	2	197578714	A	G	CCDC150	CCDS46478.1	r.?	-	-	intronic	38	0	0	81	15	18.51851852	0	0	NA	0	0	NA	1.82E-19	4	2	2	1	NA	NA	NA	unphased	1.212121212	1.212121212	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214137321	2	201414039	T	G	SGOL2	CCDS42796.1	r.?	-	-	intronic	35	0	0	82	5	6.097560976	0	0	NA	0	0	NA	6.19E-05	4	2	2	1	NA	NA	NA	unphased	0.399113082	0.399113082	1	0.1475	0.8525	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214137346	2	201718104	A	G	CLK1	CCDS2331.1	r.1516u>c	c.1380T>C	p.Y460Y	silent	27	0	0	90	31	34.44444444	113	1	0.884955752	177	47	26.55367232	4.56E-48	4	2	2	1	NA	NA	NA	unphased	2.254545455	1.127272727	2	0	1	0	2	1	7.86E-66	0.432444778	YES	1_1	somatic	custom.pulldown.HiSeq
1352322	PD9768b	1214137661	2	204828749	A	G	ICOS	CCDS2363.1	r.?	-	-	downstream	19	0	0	75	11	14.66666667	0	0	NA	0	0	NA	1.78E-13	4	2	2	1	NA	NA	NA	unphased	0.96	0.96	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214137867	2	207268496	A	G	-	-	-	-	-	-	31	0	0	86	32	37.20930233	0	0	NA	1	0	0	7.14E-51	4	2	2	1	NA	NA	NA	unphased	2.43551797	1.217758985	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214138164	2	210880811	A	G	RPE	CCDS2388.1	r.414a>g	c.317A>G	p.K106R	missense	28	0	0	80	6	7.5	236	1	0.423728814	259	15	5.791505792	3.42E-06	4	2	2	1	NA	NA	NA	unphased	0.490909091	0.490909091	1	0.0575	0.9425	0	2	1	7.79E-12	0.693629422	YES	1_1	somatic	custom.pulldown.HiSeq
1352322	PD9768b	1214138268	2	212452801	A	G	ERBB4	CCDS2394.1	r.?	-	-	intronic	32	0	0	78	9	11.53846154	0	0	NA	0	0	NA	2.61E-10	2	1	1	1	NA	NA	NA	unphased	0.524475524	0.524475524	1	0.0975	0.9025	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214138379	2	213723695	A	G	-	-	-	-	-	-	40	0	0	70	22	31.42857143	0	0	NA	0	0	NA	1.63E-33	2	1	1	1	NA	NA	NA	unphased	1.428571429	1.428571429	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214138577	2	217066994	C	G	XRCC5	CCDS2402.1	r.?	-	-	intronic	29	0	0	72	19	26.38888889	154	0	0	193	39	20.20725389	1.75E-27	2.085536502	2	0	0.914463498	2	1	0.085536502	unphased	1.222067082	1.222067082	1	0	0.99875	0.00125	2	1	9.32E-50	1	YES	1_1	somatic	custom.pulldown.HiSeq
1352322	PD9768b	1214138578	2	217067023	C	G	XRCC5	CCDS2402.1	r.?	-	-	intronic	36	0	0	76	21	27.63157895	136	0	0	187	33	17.64705882	1.07E-30	2.085536502	2	0	0.914463498	2	1	0.085536502	unphased	1.279615947	1.279615947	1	0	1	0	2	1	2.94E-40	1	YES	1_1	somatic	custom.pulldown.HiSeq
1352322	PD9768b	1214138812	2	221620455	A	G	-	-	-	-	-	-	38	0	0	71	29	40.84507042	0	0	NA	0	0	NA	1.04E-47	2.085536502	2	0	0.914463498	2	1	0.085536502	unphased	1.891531555	0.988021739	1.914463498	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214138883	2	222985547	A	G	-	-	-	-	-	-	35	0	0	41	16	39.02439024	0	0	NA	0	0	NA	1.40E-26	2.085536502	2	0	0.914463498	2	1	0.085536502	unphased	1.807216019	0.9439804	1.914463498	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214139144	2	228322419	T	G	-	-	-	-	-	-	20	0	0	55	28	50.90909091	0	0	NA	0	0	NA	1.25E-49	2.085536502	2	0	0.914463498	2	1	0.085536502	unphased	2.357595442	1.178797721	2	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214139252	2	230640706	C	G	TRIP12	CCDS33391.1	r.?	-	-	intronic	25	0	0	56	9	16.07142857	0	0	NA	0	0	NA	1.20E-11	2.085536502	2	0	0.914463498	2	1	0.085536502	unphased	0.744266418	0.744266418	1	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214140860	20	12424327	C	G	-	-	-	-	-	-	12	0	0	24	5	20.83333333	0	0	NA	0	0	NA	1.23E-07	3.731603834	2	1	0.268396166	2	2	0.731603834	unphased	1.307720496	1.307720496	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214141101	20	15639186	C	G	MACROD2	CCDS13120.2	r.?	-	-	intronic	30	0	0	75	27	36	0	0	NA	0	0	NA	1.08E-42	3.731603834	2	1	0.268396166	2	2	0.731603834	unphased	2.259741017	1.129870508	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214145348	20	30669006	C	G	HCK	CCDS33460.1	r.?	-	-	intronic	30	0	0	74	28	37.83783784	0	0	NA	0	0	NA	5.88E-45	4	2	2	1	NA	NA	NA	unphased	2.476658477	1.238329238	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214145749	20	34649213	C	G	-	-	-	-	-	-	34	0	0	96	12	12.5	0	0	NA	0	0	NA	1.03E-13	4	2	2	1	NA	NA	NA	unphased	0.818181818	0.818181818	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214145966	20	36718219	A	G	RPRD1B	CCDS13301.1	r.1325a>g	c.923A>G	p.N308S	missense	18	0	0	77	16	20.77922078	326	0	0	241	55	22.82157676	1.56E-21	4	2	2	1	NA	NA	NA	unphased	1.360094451	1.360094451	1	0	1	0	2	1	1.12E-72	1	YES	1_1	somatic	custom.pulldown.HiSeq
1352322	PD9768b	1214146267	20	41074576	T	G	PTPRT	CCDS42874.1	r.?	-	-	intronic	23	0	0	92	28	30.43478261	0	0	NA	0	0	NA	8.79E-42	4	2	2	1	NA	NA	NA	unphased	1.992094862	0.996047431	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214146953	20	47351721	A	G	PREX1	CCDS13410.1	r.?	-	-	intronic	20	0	0	78	25	32.05128205	0	0	NA	0	0	NA	3.94E-38	4	2	2	1	NA	NA	NA	unphased	2.097902098	1.048951049	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214147147	20	49459713	C	G	BCAS4	CCDS33487.1	r.?	-	-	intronic	25	0	0	71	23	32.3943662	0	0	NA	0	0	NA	2.51E-35	4	2	2	1	NA	NA	NA	unphased	2.120358515	1.060179257	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214147160	20	49671028	C	G	-	-	-	-	-	-	23	0	0	81	14	17.28395062	0	0	NA	0	0	NA	8.14E-18	4	2	2	1	NA	NA	NA	unphased	1.131313131	1.131313131	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214147367	20	51554280	C	G	-	-	-	-	-	-	37	0	0	78	19	24.35897436	0	0	NA	0	0	NA	9.67E-27	4	2	2	1	NA	NA	NA	unphased	1.594405594	0.797202797	2	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214147702	20	54693322	A	G	-	-	-	-	-	-	26	0	0	60	10	16.66666667	0	0	NA	0	0	NA	5.86E-13	4	2	2	1	NA	NA	NA	unphased	1.090909091	1.090909091	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214148123	20	59962809	T	G	CDH4	CCDS13488.1	r.?	-	-	intronic	14	0	0	63	24	38.0952381	1	0	0	0	0	NA	7.74E-39	4	2	2	1	NA	NA	NA	unphased	2.493506494	1.246753247	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214148125	20	60008647	A	G	CDH4	CCDS13488.1	r.?	-	-	intronic	30	0	0	97	36	37.11340206	0	0	NA	0	0	NA	5.51E-57	4	2	2	1	NA	NA	NA	unphased	2.429240862	1.214620431	2	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214148741	21	9463331	C	G	-	-	-	-	-	-	153	0	0	240	26	10.83333333	0	0	NA	0	0	NA	2.48E-26	1.765333865	1	0	0.234666135	2	0	0.765333865	unphased	0.467002078	0.467002078	1	0.9975	0.0025	0	1	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214154238	21	15732585	A	G	ENSG00000233112	ENST00000450407	r.?	-	-	intronic	28	0	0	45	11	24.44444444	0	0	NA	0	0	NA	4.24E-16	1.765333865	1	0	0.234666135	2	0	0.765333865	unphased	1.053748278	1.053748278	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214154652	21	23864245	T	G	-	-	-	-	-	-	39	0	0	57	23	40.35087719	0	0	NA	0	0	NA	5.38E-38	1.765333865	1	0	0.234666135	2	0	0.765333865	unphased	1.739440938	0.985332561	1.765333865	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214154742	21	25452505	A	G	-	-	-	-	-	-	30	0	0	66	21	31.81818182	0	0	NA	0	0	NA	3.42E-32	1.765333865	1	0	0.234666135	2	0	0.765333865	unphased	1.371614494	1.371614494	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214155255	21	34940378	A	G	SON	CCDS13629.1	r.?	-	-	intronic	18	0	0	50	6	12	0	0	NA	0	0	NA	2.06E-07	1.765333865	1	0	0.234666135	2	0	0.765333865	unphased	0.517294609	0.675907121	0.765333865	0.00875	0.99125	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214158341	22	37010611	C	G	CACNG2	CCDS13931.1	r.?	-	-	intronic	10	0	0	52	23	44.23076923	0	0	NA	0	0	NA	3.66E-39	2.072240472	2	0	0.927759528	2	1	0.072240472	unphased	2.042442027	1.021221014	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214158661	22	42434827	C	G	NAGA	ENST00000361920	r.?	-	-	intronic	10	0	0	61	22	36.06557377	0	0	NA	0	0	NA	4.38E-35	2.072240472	2	0	0.927759528	2	1	0.072240472	unphased	1.665398203	0.8639035	1.927759528	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214159347	3	1573657	A	G	-	-	-	-	-	-	49	0	0	80	9	11.25	0	0	NA	0	0	NA	3.29E-10	3.412637193	3	0	0.587362807	4	0	0.412637193	unphased	0.670285321	0.670285321	1	0.0125	0.9875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214159414	3	2341180	C	G	CNTN4	CCDS43041.1	r.?	-	-	intronic	24	0	0	69	5	7.246376812	0	0	NA	0	0	NA	2.69E-05	3.412637193	3	0	0.587362807	4	0	0.412637193	unphased	0.431745778	1.046308442	0.412637193	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214159432	3	2542599	C	G	CNTN4	CCDS43041.1	r.?	-	-	intronic	23	0	0	69	42	60.86956522	0	0	NA	0	0	NA	2.23E-78	3.412637193	3	0	0.587362807	4	0	0.412637193	unphased	3.626664536	1.062716114	3.412637193	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214159539	3	3920398	C	G	-	-	-	-	-	-	27	0	0	88	15	17.04545455	0	0	NA	0	0	NA	6.87E-19	3.412637193	3	0	0.587362807	4	0	0.412637193	unphased	1.015583819	1.015583819	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214159811	3	6585338	T	G	-	-	-	-	-	-	19	0	0	77	7	9.090909091	0	0	NA	0	0	NA	1.38E-07	3.412637193	3	0	0.587362807	4	0	0.412637193	unphased	0.541644703	1.3126415	0.412637193	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214159962	3	8395486	A	G	ENSG00000234563	ENST00000446572	r.?	-	-	intronic	27	0	0	78	11	14.1025641	0	0	NA	0	0	NA	2.79E-13	3.412637193	3	0	0.587362807	4	0	0.412637193	unphased	0.840243707	0.840243707	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214160460	3	13140989	C	G	-	-	-	-	-	-	12	0	0	82	5	6.097560976	0	0	NA	0	0	NA	6.19E-05	3.412637193	3	0	0.587362807	4	0	0.412637193	unphased	0.363298277	0.880430274	0.412637193	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214160638	3	15195308	T	G	-	-	-	-	-	-	27	0	0	53	29	54.71698113	0	0	NA	0	0	NA	1.29E-52	3.412637193	3	0	0.587362807	4	0	0.412637193	unphased	3.260087932	0.955298717	3.412637193	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214161901	3	30301023	C	G	-	-	-	-	-	-	35	0	0	65	31	47.69230769	111	0	0	153	77	50.32679739	1.34E-53	3.412637193	3	0	0.587362807	4	0	0.412637193	unphased	2.841551444	0.947183815	3	0	1	0	2	1	3.33E-133	1	YES	1_1	somatic	custom.pulldown.HiSeq
1352322	PD9768b	1214163071	3	45179536	C	G	CDCP1	CCDS2727.1	r.?	-	-	intronic	20	0	0	63	13	20.63492063	0	0	NA	0	0	NA	1.01E-17	3	3	0	1	NA	NA	NA	unphased	1.144300144	1.144300144	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214163208	3	47151549	C	G	SETD2	CCDS2749.2	r.?	-	-	intronic	42	0	0	70	33	47.14285714	0	0	NA	0	0	NA	9.75E-57	3	3	0	1	NA	NA	NA	unphased	2.614285714	0.871428571	3	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214164023	3	59754669	C	G	FHIT	CCDS2894.1	r.?	-	-	intronic	17	0	0	32	10	31.25	0	0	NA	0	0	NA	5.70E-16	2	2	0	1	NA	NA	NA	unphased	1.420454545	1.420454545	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214164063	3	60704789	A	G	FHIT	CCDS2894.1	r.?	-	-	intronic	36	0	0	50	12	24	0	0	NA	0	0	NA	2.49E-17	2	2	0	1	NA	NA	NA	unphased	1.090909091	1.090909091	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214164165	3	62070187	T	G	PTPRG	CCDS2895.1	r.?	-	-	intronic	34	0	0	59	22	37.28813559	0	0	NA	0	0	NA	1.79E-35	2	2	0	1	NA	NA	NA	unphased	1.694915254	0.847457627	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214164465	3	67974411	A	G	-	-	-	-	-	-	42	0	0	53	10	18.86792453	0	0	NA	0	0	NA	1.57E-13	2	2	0	1	NA	NA	NA	unphased	0.857632933	0.857632933	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214166500	3	84581373	C	G	-	-	-	-	-	-	39	0	0	46	11	23.91304348	0	0	NA	0	0	NA	5.55E-16	2	2	0	1	NA	NA	NA	unphased	1.086956522	1.086956522	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214166744	3	89541988	T	G	-	-	-	-	-	-	34	0	0	54	21	38.88888889	0	0	NA	0	0	NA	2.12E-34	2	2	0	1	NA	NA	NA	unphased	1.767676768	0.883838384	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214167538	3	102697333	C	G	-	-	-	-	-	-	37	0	0	57	27	47.36842105	0	0	NA	0	0	NA	9.04E-47	2	2	0	1	NA	NA	NA	unphased	2.153110048	1.076555024	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214167940	3	110205936	A	G	-	-	-	-	-	-	39	0	0	59	19	32.20338983	0	0	NA	0	0	NA	2.20E-29	2	2	0	1	NA	NA	NA	unphased	1.463790447	0.731895223	2	0.00375	0.99625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214168139	3	114111744	T	G	ZBTB20	CCDS2981.1	r.?	-	-	intronic	40	0	0	48	21	43.75	0	0	NA	0	0	NA	9.35E-36	2	2	0	1	NA	NA	NA	unphased	1.988636364	0.994318182	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214168892	3	127437426	A	G	MGLL	CCDS43148.1	r.?	-	-	intronic	22	0	0	56	24	42.85714286	0	0	NA	0	0	NA	2.23E-40	2	2	0	1	NA	NA	NA	unphased	1.948051948	0.974025974	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214169546	3	138050773	A	G	TXNDC6	CCDS3099.1	r.?	-	-	upstream	17	0	0	48	7	14.58333333	0	0	NA	0	0	NA	4.81E-09	2	2	0	1	NA	NA	NA	unphased	0.662878788	0.662878788	1	0.0075	0.9925	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214169914	3	145311289	T	G	-	-	-	-	-	-	32	0	0	43	10	23.25581395	0	0	NA	0	0	NA	1.61E-14	2	2	0	1	NA	NA	NA	unphased	1.057082452	1.057082452	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214170420	3	155670634	A	G	-	-	-	-	-	-	42	0	0	72	38	52.77777778	0	0	NA	0	0	NA	1.22E-67	2	2	0	1	NA	NA	NA	unphased	2.398989899	1.199494949	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214170623	3	159837155	C	G	-	-	-	-	-	-	32	0	0	57	30	52.63157895	0	0	NA	0	0	NA	1.15E-53	2	2	0	1	NA	NA	NA	unphased	2.392344498	1.196172249	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214170726	3	161937082	A	G	-	-	-	-	-	-	36	0	0	62	30	48.38709677	0	0	NA	0	0	NA	3.60E-52	2	2	0	1	NA	NA	NA	unphased	2.19941349	1.099706745	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214170900	3	164631585	A	G	-	-	-	-	-	-	32	0	0	73	21	28.76712329	0	0	NA	0	0	NA	4.03E-31	2	2	0	1	NA	NA	NA	unphased	1.307596513	1.307596513	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214170928	3	164950416	C	G	-	-	-	-	-	-	37	0	0	36	8	22.22222222	0	0	NA	0	0	NA	1.04E-11	2	2	0	1	NA	NA	NA	unphased	1.01010101	1.01010101	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214171158	3	169538323	C	G	LRRIQ4	CCDS46951.1	r.?	-	-	upstream	11	0	0	28	8	28.57142857	0	0	NA	0	0	NA	1.11E-12	2	2	0	1	NA	NA	NA	unphased	1.298701299	1.298701299	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214171897	3	182880314	C	G	LAMP3	CCDS3242.1	r.?	-	-	intronic	8	0	0	55	24	43.63636364	0	0	NA	0	0	NA	1.28E-40	2	2	0	1	NA	NA	NA	unphased	1.983471074	0.991735537	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214172005	3	184181670	T	G	EIF2B5	ENST00000444495	r.?	-	-	intronic	28	0	0	51	22	43.1372549	0	0	NA	0	0	NA	3.24E-37	2	2	0	1	NA	NA	NA	unphased	1.960784314	0.980392157	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214172166	3	186627958	C	G	-	-	-	-	-	-	9	0	0	50	21	42	0	0	NA	0	0	NA	2.79E-35	2	2	0	1	NA	NA	NA	unphased	1.909090909	0.954545455	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214172220	3	187295217	A	G	-	-	-	-	-	-	34	0	0	57	28	49.12280702	0	0	NA	0	0	NA	4.87E-49	2	2	0	1	NA	NA	NA	unphased	2.232854864	1.116427432	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214172249	3	187905489	A	G	LPP	ENST00000448637	r.?	-	-	intronic	28	0	0	72	19	26.38888889	0	0	NA	0	0	NA	1.75E-27	2	2	0	1	NA	NA	NA	unphased	1.199494949	1.199494949	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214172359	3	190187028	A	G	-	-	-	-	-	-	26	0	0	44	24	54.54545455	0	0	NA	0	0	NA	9.53E-44	2	2	0	1	NA	NA	NA	unphased	2.479338843	1.239669421	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214173390	4	1926242	C	G	WHSC1	CCDS3356.1	r.?	-	-	intronic	13	0	0	41	4	9.756097561	0	0	NA	0	0	NA	5.46E-05	1.74953812	1	0	0.25046188	2	0	0.74953812	unphased	0.419023675	0.559042514	0.74953812	0.01375	0.98625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214174371	4	19752475	A	G	-	-	-	-	-	-	41	0	0	50	20	40	0	0	NA	0	0	NA	3.90E-33	1.74953812	1	0	0.25046188	2	0	0.74953812	unphased	1.717997066	0.981971782	1.74953812	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214174759	4	27268640	C	G	-	-	-	-	-	-	46	0	0	52	21	40.38461538	0	0	NA	0	0	NA	7.89E-35	1.74953812	1	0	0.25046188	2	0	0.74953812	unphased	1.734516269	0.991413819	1.74953812	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214174839	4	29231380	A	G	-	-	-	-	-	-	24	0	0	52	22	42.30769231	0	0	NA	0	0	NA	5.59E-37	1.74953812	1	0	0.25046188	2	0	0.74953812	unphased	1.817112282	1.038624001	1.74953812	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214174999	4	32596809	C	G	-	-	-	-	-	-	33	0	0	61	13	21.31147541	0	0	NA	0	0	NA	6.41E-18	1.74953812	1	0	0.25046188	2	0	0.74953812	unphased	0.915326306	0.915326306	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214175114	4	33899712	C	G	-	-	-	-	-	-	37	0	0	46	19	41.30434783	0	0	NA	0	0	NA	6.97E-32	1.74953812	1	0	0.25046188	2	0	0.74953812	unphased	1.77401871	1.013992601	1.74953812	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214175293	4	37382280	A	G	KIAA1239	CCDS47040.1	r.?	-	-	intronic	41	0	0	45	6	13.33333333	0	0	NA	0	0	NA	1.08E-07	1.74953812	1	0	0.25046188	2	0	0.74953812	unphased	0.572665689	0.764024768	0.74953812	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214175646	4	43250503	C	G	-	-	-	-	-	-	29	0	0	61	19	31.14754098	0	0	NA	0	0	NA	4.64E-29	1.74953812	1	0	0.25046188	2	0	0.74953812	unphased	1.337784601	1.337784601	1	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214175694	4	44111151	T	G	-	-	-	-	-	-	22	0	0	53	20	37.73584906	0	0	NA	0	0	NA	1.65E-32	1.74953812	1	0	0.25046188	2	0	0.74953812	unphased	1.620751949	0.926388474	1.74953812	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214179802	4	58530799	C	G	-	-	-	-	-	-	32	0	0	63	15	23.80952381	0	0	NA	0	0	NA	2.97E-21	3	2	1	1	NA	NA	NA	unphased	1.32034632	1.32034632	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214179823	4	58829410	C	G	-	-	-	-	-	-	41	0	0	61	7	11.47540984	0	0	NA	0	0	NA	2.69E-08	3	2	1	1	NA	NA	NA	unphased	0.636363636	0.636363636	1	0.0175	0.9825	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214179826	4	58930778	A	G	-	-	-	-	-	-	30	0	0	54	15	27.77777778	0	0	NA	0	0	NA	2.20E-22	3	2	1	1	NA	NA	NA	unphased	1.54040404	0.77020202	2	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214179905	4	60232405	C	G	-	-	-	-	-	-	38	0	0	74	16	21.62162162	0	0	NA	0	0	NA	7.81E-22	3	2	1	1	NA	NA	NA	unphased	1.199017199	1.199017199	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214180012	4	62472094	A	G	LPHN3	ENST00000512091	r.?	-	-	intronic	22	0	0	57	23	40.35087719	0	0	NA	0	0	NA	5.38E-38	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	1.735494137	0.988574239	1.755552662	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214180034	4	63066350	A	G	-	-	-	-	-	-	29	0	0	48	19	39.58333333	0	0	NA	0	0	NA	1.92E-31	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	1.70248202	0.969769837	1.755552662	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214180106	4	64421899	A	G	-	-	-	-	-	-	28	0	0	47	18	38.29787234	0	0	NA	0	0	NA	1.52E-29	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	1.64719425	0.938276752	1.755552662	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214180132	4	64814016	C	G	-	-	-	-	-	-	30	0	0	40	17	42.5	0	0	NA	0	0	NA	6.07E-29	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	1.827928063	1.041226562	1.755552662	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214180228	4	66854596	T	G	-	-	-	-	-	-	27	0	0	57	24	42.10526316	0	0	NA	0	0	NA	3.83E-40	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	1.810950403	1.031555727	1.755552662	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214180443	4	71371194	C	G	-	-	-	-	-	-	37	0	0	67	10	14.92537313	137	0	0	134	35	26.11940299	1.87E-12	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	0.641941374	0.849631543	0.755552662	0.0025	0.99625	0.00125	2	1	3.71E-49	1	YES	1_1	somatic	custom.pulldown.HiSeq
1352322	PD9768b	1214181060	4	85376972	C	G	-	-	-	-	-	-	44	0	0	58	5	8.620689655	0	0	NA	0	0	NA	1.15E-05	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	0.370776483	0.49073546	0.755552662	0.04625	0.95375	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214181648	4	98466928	A	G	-	-	-	-	-	-	29	0	0	47	17	36.17021277	0	0	NA	0	0	NA	1.81E-27	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	1.555683458	0.886150266	1.755552662	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214181968	4	105023172	C	G	-	-	-	-	-	-	26	0	0	52	25	48.07692308	0	0	NA	0	0	NA	1.25E-43	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	2.067791927	1.177858102	1.755552662	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214182349	4	113413686	C	G	-	-	-	-	-	-	31	0	0	39	17	43.58974359	0	0	NA	0	0	NA	3.51E-29	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	1.874798014	1.067924679	1.755552662	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214182434	4	115075525	C	G	-	-	-	-	-	-	32	0	0	55	14	25.45454545	0	0	NA	0	0	NA	2.19E-20	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	1.094801835	1.094801835	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214182566	4	117856099	A	G	-	-	-	-	-	-	29	0	0	48	22	45.83333333	0	0	NA	0	0	NA	5.76E-38	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	1.97129497	1.122891391	1.755552662	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214182946	4	124920327	A	G	-	-	-	-	-	-	31	0	0	44	21	47.72727273	0	0	NA	0	0	NA	8.60E-37	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	2.05275344	1.169291861	1.755552662	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214183029	4	127311352	A	G	-	-	-	-	-	-	26	0	0	53	21	39.62264151	0	0	NA	0	0	NA	1.30E-34	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	1.704172667	0.970732866	1.755552662	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214183054	4	127845819	C	G	-	-	-	-	-	-	34	0	0	50	9	18	0	0	NA	0	0	NA	4.07E-12	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	0.774181297	1.024655641	0.755552662	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214183065	4	128175210	C	G	-	-	-	-	-	-	37	0	0	56	13	23.21428571	0	0	NA	0	0	NA	1.89E-18	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	0.998448102	0.998448102	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214183135	4	129447610	C	G	-	-	-	-	-	-	33	0	0	66	25	37.87878788	0	0	NA	0	0	NA	2.57E-40	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	1.629169397	0.928009414	1.755552662	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214184176	4	147454599	A	G	-	-	-	-	-	-	30	0	0	51	21	41.17647059	0	0	NA	0	0	NA	4.73E-35	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	1.771002968	1.008800821	1.755552662	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214184507	4	154088465	C	G	TRIM2	CCDS47147.1	r.?	-	-	intronic	20	0	0	52	5	9.615384615	0	0	NA	0	0	NA	6.68E-06	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	0.413558385	0.547358782	0.755552662	0.025	0.975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214184617	4	156432716	C	G	-	-	-	-	-	-	35	0	0	49	21	42.85714286	0	0	NA	0	0	NA	1.63E-35	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	1.843288803	1.049976365	1.755552662	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214185147	4	166125546	A	G	KLHL2	CCDS34094.1	r.?	-	-	upstream	33	0	0	50	17	34	0	0	NA	0	0	NA	6.43E-27	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	1.462342451	1.462342451	1	0	0.995	0.005	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214185191	4	167064639	A	G	-	-	-	-	-	-	31	0	0	47	17	36.17021277	0	0	NA	0	0	NA	1.81E-27	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	1.555683458	0.886150266	1.755552662	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214185341	4	169612407	A	G	PALLD	CCDS34098.1	r.?	-	-	intronic	33	0	0	52	24	46.15384615	0	0	NA	0	0	NA	2.22E-41	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	1.98508025	1.130743778	1.755552662	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214185564	4	173960004	C	G	GALNTL6	CCDS34104.1	r.?	-	-	intronic	37	0	0	49	21	42.85714286	0	0	NA	0	0	NA	1.63E-35	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	1.843288803	1.049976365	1.755552662	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214186181	4	184535986	T	G	-	-	-	-	-	-	27	0	0	56	5	8.928571429	0	0	NA	0	0	NA	9.65E-06	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	0.384018501	0.508261727	0.755552662	0.03875	0.96125	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214186431	4	187515468	A	G	FAT1	CCDS47177.1	r.?	-	-	intronic	6	0	0	49	13	26.53061224	0	0	NA	0	0	NA	2.71E-19	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	1.141083545	1.141083545	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214186656	4	190177086	A	G	-	-	-	-	-	-	42	0	0	39	18	46.15384615	0	0	NA	0	0	NA	2.15E-31	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	1.98508025	1.130743778	1.755552662	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214186720	4	190403425	C	G	ENSG00000227461	ENST00000454642	r.?	-	-	intronic	24	1	4.166666667	27	11	40.74074074	0	0	NA	0	0	NA	5.92E-19	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	1.752262196	0.99812568	1.755552662	0	1	0	2	0.113346489	1	1	NA	NA	NA	NA
1352322	PD9768b	1214189001	5	11811771	C	G	CTNND2	CCDS3881.1	r.?	-	-	intronic	29	0	0	56	8	14.28571429	0	0	NA	0	0	NA	4.48E-10	3	2	1	1	NA	NA	NA	unphased	0.792207792	0.792207792	1	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214189214	5	15018990	T	G	-	-	-	-	-	-	18	0	0	62	5	8.064516129	0	0	NA	0	0	NA	1.60E-05	3	2	1	1	NA	NA	NA	unphased	0.447214076	0.447214076	1	0.095	0.905	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214189357	5	17135136	A	G	-	-	-	-	-	-	22	0	0	76	31	40.78947368	0	0	NA	0	0	NA	7.17E-51	3	2	1	1	NA	NA	NA	unphased	2.261961722	1.130980861	2	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214189435	5	17976347	C	G	-	-	-	-	-	-	38	0	0	64	16	25	0	0	NA	0	0	NA	5.94E-23	3	2	1	1	NA	NA	NA	unphased	1.386363636	1.386363636	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214190029	5	25430972	A	G	-	-	-	-	-	-	33	0	0	35	10	28.57142857	0	0	NA	0	0	NA	1.60E-15	3	2	1	1	NA	NA	NA	unphased	1.584415584	1.584415584	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214190033	5	25479267	A	G	-	-	-	-	-	-	31	0	0	57	16	28.07017544	0	0	NA	0	0	NA	7.28E-24	3	2	1	1	NA	NA	NA	unphased	1.55661882	0.77830941	2	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214190112	5	26723405	A	G	-	-	-	-	-	-	27	0	0	70	10	14.28571429	0	0	NA	0	0	NA	2.95E-12	3	2	1	1	NA	NA	NA	unphased	0.792207792	0.792207792	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214190134	5	27107778	T	G	CDH9	ENST00000513289	r.?	-	-	intronic	31	0	0	87	15	17.24137931	1	0	0	0	0	NA	5.73E-19	3	2	1	1	NA	NA	NA	unphased	0.956112853	0.956112853	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214190161	5	27592740	A	G	-	-	-	-	-	-	45	0	0	57	14	24.56140351	0	0	NA	0	0	NA	3.84E-20	3	2	1	1	NA	NA	NA	unphased	1.362041467	1.362041467	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214190190	5	28266862	T	G	-	-	-	-	-	-	36	0	0	49	15	30.6122449	0	0	NA	0	0	NA	4.10E-23	3	2	1	1	NA	NA	NA	unphased	1.697588126	0.848794063	2	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214190318	5	29799839	T	G	-	-	-	-	-	-	30	0	0	63	21	33.33333333	0	0	NA	0	0	NA	1.08E-32	3	2	1	1	NA	NA	NA	unphased	1.848484848	0.924242424	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214190594	5	33179537	C	G	-	-	-	-	-	-	24	0	0	79	11	13.92405063	0	0	NA	0	0	NA	3.23E-13	3	2	1	1	NA	NA	NA	unphased	0.772151899	0.772151899	1	0.00375	0.99625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214190836	5	36897991	A	G	NIPBL	CCDS3920.1	r.?	-	-	intronic	31	0	0	57	18	31.57894737	0	0	NA	0	0	NA	9.84E-28	3	2	1	1	NA	NA	NA	unphased	1.751196172	0.875598086	2	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214190962	5	39004690	T	G	RICTOR	CCDS34148.1	r.?	-	-	intronic	15	0	0	63	12	19.04761905	0	0	NA	0	0	NA	5.15E-16	3	2	1	1	NA	NA	NA	unphased	1.056277056	1.056277056	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214190978	5	39254900	C	G	FYB	ENST00000512982	r.?	-	-	intronic	35	0	0	65	26	40	0	0	NA	0	0	NA	1.24E-42	3	2	1	1	NA	NA	NA	unphased	2.218181818	1.109090909	2	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214191168	5	42897133	T	G	-	-	-	-	-	-	30	0	0	64	9	14.0625	0	0	NA	0	0	NA	4.20E-11	3	2	1	1	NA	NA	NA	unphased	0.779829545	0.779829545	1	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214191280	5	45108687	C	G	-	-	-	-	-	-	35	0	0	61	11	18.03278689	0	0	NA	0	0	NA	1.62E-14	3	2	1	1	NA	NA	NA	unphased	1	1	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214192282	5	59132085	A	G	PDE4D	CCDS47213.1	r.?	-	-	intronic	28	0	0	53	17	32.0754717	0	0	NA	0	0	NA	2.08E-26	1.761129122	1	0	0.238870878	2	0	0.761129122	unphased	1.381357025	1.381357025	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214192626	5	66858108	C	G	-	-	-	-	-	-	24	0	0	47	20	42.55319149	0	0	NA	0	0	NA	8.18E-34	1.754521149	1	0	0.245478851	2	0	0.754521149	unphased	1.829776891	1.042892468	1.754521149	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214192882	5	73112906	A	G	ENSG00000214944	CCDS47231.1	r.?	-	-	intronic	36	0	0	57	24	42.10526316	0	0	NA	0	0	NA	3.83E-40	1.754521149	1	0	0.245478851	2	0	0.754521149	unphased	1.810516082	1.031914653	1.754521149	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214193442	5	84697405	C	G	-	-	-	-	-	-	34	0	0	51	25	49.01960784	0	0	NA	0	0	NA	6.52E-44	1.754521149	1	0	0.245478851	2	0	0.754521149	unphased	2.107831223	1.201371226	1.754521149	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214193569	5	88056053	A	G	MEF2C	CCDS47244.1	r.?	-	-	intronic	43	0	0	58	16	27.5862069	0	0	NA	0	0	NA	1.00E-23	1.754521149	1	0	0.245478851	2	0	0.754521149	unphased	1.186200191	1.186200191	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214194698	5	112599336	C	G	MCC	CCDS4111.1	r.?	-	-	intronic	43	0	0	45	13	28.88888889	0	0	NA	0	0	NA	7.68E-20	2	1	1	1	NA	NA	NA	unphased	1.313131313	1.313131313	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214194775	5	114454478	A	G	-	-	-	-	-	-	37	0	0	61	8	13.1147541	0	0	NA	0	0	NA	9.09E-10	1.788223154	1	0	0.211776846	2	0	0.788223154	unphased	0.568351174	0.721053639	0.788223154	0.00625	0.99375	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214195165	5	123532852	T	G	-	-	-	-	-	-	36	0	0	55	17	30.90909091	0	0	NA	0	0	NA	4.35E-26	1.788223154	1	0	0.211776846	2	0	0.788223154	unphased	1.33950038	1.33950038	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214195957	5	140518273	A	G	PCDHB5	CCDS4247.1	r.?	-	-	downstream	38	0	0	49	7	14.28571429	0	0	NA	0	0	NA	5.58E-09	1.788223154	1	0	0.211776846	2	0	0.788223154	unphased	0.619096814	0.785433428	0.788223154	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214196376	5	149337798	C	G	SLC26A2	CCDS4300.1	r.?	-	-	upstream	17	0	0	22	6	27.27272727	0	0	NA	0	0	NA	1.09E-09	1.788223154	1	0	0.211776846	2	0	0.788223154	unphased	1.1819121	1.1819121	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214196493	5	152022263	A	G	-	-	-	-	-	-	32	0	0	52	21	40.38461538	0	0	NA	0	0	NA	7.89E-35	1.788223154	1	0	0.211776846	2	0	0.788223154	unphased	1.750139071	0.978702835	1.788223154	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214197096	5	164936319	A	G	-	-	-	-	-	-	53	0	0	56	21	37.5	0	0	NA	0	0	NA	5.43E-34	1.788223154	1	0	0.211776846	2	0	0.788223154	unphased	1.625129137	0.90879549	1.788223154	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214197405	5	170241856	T	G	GABRP	CCDS4375.1	r.?	-	-	downstream	23	0	0	73	14	19.17808219	0	0	NA	0	0	NA	1.71E-18	1.82619718	1	0	0.17380282	2	0	0.82619718	unphased	0.838398961	1.014768607	0.82619718	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214197408	5	170269168	C	G	-	-	-	-	-	-	38	0	0	59	15	25.42372881	0	0	NA	0	0	NA	9.90E-22	1.82619718	1	0	0.17380282	2	0	0.82619718	unphased	1.111436879	1.111436879	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214197409	5	170269400	C	G	-	-	-	-	-	-	29	0	0	59	7	11.86440678	0	0	NA	0	0	NA	2.12E-08	1.82619718	1	0	0.17380282	2	0	0.82619718	unphased	0.518670544	0.627780579	0.82619718	0.0125	0.9875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214198597	6	314081	C	G	DUSP22	CCDS4468.1	r.?	-	-	intronic	30	0	0	131	11	8.396946565	0	0	NA	0	0	NA	8.94E-11	4	2	2	1	NA	NA	NA	unphased	0.549618321	0.549618321	1	0.08625	0.91375	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214198717	6	1400431	C	G	FOXF2	CCDS4472.1	r.?	-	-	downstream	11	0	0	78	13	16.66666667	0	0	NA	0	0	NA	1.99E-16	4	2	2	1	NA	NA	NA	unphased	1.090909091	1.090909091	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214198719	6	1419761	A	G	-	-	-	-	-	-	21	0	0	69	21	30.43478261	0	0	NA	0	0	NA	1.02E-31	4	2	2	1	NA	NA	NA	unphased	1.992094862	0.996047431	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214198818	6	2659423	C	G	MYLK4	CCDS34330.1	r.?	-	-	downstream	32	0	0	58	12	20.68965517	0	0	NA	0	0	NA	1.76E-16	4	2	2	1	NA	NA	NA	unphased	1.354231975	1.354231975	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214199007	6	5454367	T	G	FARS2	CCDS4494.1	r.?	-	-	intronic	22	0	0	56	18	32.14285714	0	0	NA	0	0	NA	6.76E-28	4	2	2	1	NA	NA	NA	unphased	2.103896104	1.051948052	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214199800	6	14720464	C	G	-	-	-	-	-	-	38	0	0	83	21	25.30120482	0	0	NA	0	0	NA	8.70E-30	3.560177833	2	1	0.439822167	2	2	0.560177833	unphased	1.544798553	1.072909272	1.439822167	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214199905	6	15545664	T	G	DTNBP1	CCDS4535.1	r.?	-	-	intronic	41	0	0	78	24	30.76923077	0	0	NA	0	0	NA	3.63E-36	3.560177833	2	1	0.439822167	2	2	0.560177833	unphased	1.878656116	0.939328058	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214200146	6	18262084	C	G	DEK	CCDS34344.1	r.?	-	-	intronic	35	0	0	90	33	36.66666667	0	0	NA	0	0	NA	3.72E-52	3.560177833	2	1	0.439822167	2	2	0.560177833	unphased	2.238731872	1.119365936	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214200372	6	20494149	C	G	E2F3	CCDS4545.1	r.?	-	-	downstream	20	0	0	68	27	39.70588235	0	0	NA	0	0	NA	4.16E-44	3.560177833	2	1	0.439822167	2	2	0.560177833	unphased	2.424295209	1.212147604	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214200383	6	20582001	C	G	CDKAL1	CCDS4546.1	r.?	-	-	intronic	33	0	0	74	19	25.67567568	0	0	NA	0	0	NA	3.14E-27	3.560177833	2	1	0.439822167	2	2	0.560177833	unphased	1.567662367	1.088788882	1.439822167	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214200429	6	21030283	A	G	CDKAL1	CCDS4546.1	r.?	-	-	intronic	44	0	0	91	29	31.86813187	0	0	NA	0	0	NA	6.70E-44	3.560177833	2	1	0.439822167	2	2	0.560177833	unphased	1.945750978	0.972875489	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214200570	6	22229769	C	G	-	-	-	-	-	-	29	0	0	68	13	19.11764706	0	0	NA	0	0	NA	2.96E-17	3.560177833	2	1	0.439822167	2	2	0.560177833	unphased	1.167253249	1.167253249	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214201072	6	27985688	C	G	-	-	-	-	-	-	32	0	0	57	19	33.33333333	0	0	NA	0	0	NA	1.01E-29	3.560177833	2	1	0.439822167	2	2	0.560177833	unphased	2.035210793	1.017605396	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214201563	6	31738874	T	G	C6orf27	CCDS4721.2	r.?	-	-	intronic	34	0	0	69	19	27.53623188	0	0	NA	0	0	NA	6.95E-28	3.560177833	2	1	0.439822167	2	2	0.560177833	unphased	1.68126109	0.840630545	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214201960	6	34124862	C	G	GRM4	ENST00000374177	r.?	-	-	upstream	27	0	0	96	23	23.95833333	0	0	NA	0	0	NA	7.21E-32	3.560177833	2	1	0.439822167	2	2	0.560177833	unphased	1.462807757	1.015964187	1.439822167	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214202125	6	36228981	C	G	PNPLA1	CCDS34438.1	r.?	-	-	intronic	27	0	0	66	28	42.42424242	0	0	NA	0	0	NA	1.06E-46	3.560177833	2	1	0.439822167	2	2	0.560177833	unphased	2.590268282	1.295134141	2	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214202207	6	37230966	C	G	TBC1D22B	CCDS4832.1	r.?	-	-	intronic	22	0	0	74	30	40.54054054	0	0	NA	0	0	NA	3.53E-49	3.560177833	2	1	0.439822167	2	2	0.560177833	unphased	2.475256369	1.237628185	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214202254	6	37748520	C	G	-	-	-	-	-	-	22	0	0	83	6	7.228915663	0	0	NA	0	0	NA	4.24E-06	3.560177833	2	1	0.439822167	2	2	0.560177833	unphased	0.441371015	0.787912319	0.560177833	0.005	0.995	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214202361	6	38998918	A	G	DNAH8	CCDS4838.1	r.?	-	-	downstream	25	0	0	80	26	32.5	0	0	NA	0	0	NA	8.83E-40	3.560177833	2	1	0.439822167	2	2	0.560177833	unphased	1.984330523	0.992165261	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214202477	6	40895309	C	G	-	-	-	-	-	-	41	0	0	52	6	11.53846154	0	0	NA	0	0	NA	2.61E-07	3.560177833	2	1	0.439822167	2	2	0.560177833	unphased	0.704496044	1.257629279	0.560177833	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214202981	6	47351324	C	G	-	-	-	-	-	-	32	0	0	56	15	26.78571429	0	0	NA	0	0	NA	4.09E-22	3.560177833	2	1	0.439822167	2	2	0.560177833	unphased	1.635437244	1.135860581	1.439822167	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214203072	6	48649713	A	G	-	-	-	-	-	-	38	0	0	67	25	37.31343284	0	0	NA	0	0	NA	4.07E-40	3.560177833	2	1	0.439822167	2	2	0.560177833	unphased	2.278221037	1.139110518	2	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214203434	6	54600660	T	G	-	-	-	-	-	-	22	0	0	63	5	7.936507937	0	0	NA	0	0	NA	1.73E-05	3.560177833	2	1	0.439822167	2	2	0.560177833	unphased	0.484573998	0.865036012	0.560177833	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214203479	6	55296277	C	G	HMGCLL1	CCDS43475.1	r.?	-	-	downstream	31	0	0	56	17	30.35714286	0	0	NA	0	0	NA	6.22E-26	3.560177833	2	1	0.439822167	2	2	0.560177833	unphased	1.853495543	0.926747772	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214203690	6	57398651	A	G	PRIM2	ENST00000425433	r.?	-	-	intronic	105	0	0	195	15	7.692307692	0	0	NA	0	0	NA	1.29E-13	3.560177833	2	1	0.439822167	2	2	0.560177833	unphased	0.469664029	0.838419519	0.560177833	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214204371	6	65893754	C	G	EYS	CCDS47445.1	r.?	-	-	intronic	34	0	0	57	13	22.80701754	0	0	NA	0	0	NA	2.44E-18	2.563226083	1	1	0.436773917	2	1	0.563226083	unphased	1.165137687	1.165137687	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214204505	6	67907559	T	G	-	-	-	-	-	-	34	0	0	70	14	20	0	0	NA	0	0	NA	9.08E-19	2.563226083	1	1	0.436773917	2	1	0.563226083	unphased	1.021736126	1.021736126	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214204597	6	69379323	C	G	BAI3	CCDS4968.1	r.?	-	-	intronic	27	0	0	59	10	16.94915254	0	0	NA	0	0	NA	4.91E-13	2.563226083	1	1	0.436773917	2	1	0.563226083	unphased	0.865878073	0.865878073	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214205034	6	77458554	T	G	-	-	-	-	-	-	33	0	0	59	12	20.33898305	0	0	NA	0	0	NA	2.20E-16	2.563226083	1	1	0.436773917	2	1	0.563226083	unphased	1.039053687	1.039053687	1	0.00125	0.9975	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214205035	6	77458585	C	G	-	-	-	-	-	-	41	0	0	60	12	20	0	0	NA	0	0	NA	2.74E-16	2.563226083	1	1	0.436773917	2	1	0.563226083	unphased	1.021736126	1.021736126	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214205090	6	78557683	A	G	-	-	-	-	-	-	21	0	0	50	17	34	0	0	NA	0	0	NA	6.43E-27	2.563226083	1	1	0.436773917	2	1	0.563226083	unphased	1.736951414	1.111132569	1.563226083	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214205261	6	81476065	C	G	-	-	-	-	-	-	21	0	0	58	6	10.34482759	0	0	NA	0	0	NA	5.06E-07	2.563226083	1	1	0.436773917	2	1	0.563226083	unphased	0.528484203	0.93831628	0.563226083	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214205300	6	82023128	A	G	-	-	-	-	-	-	32	0	0	42	10	23.80952381	0	0	NA	0	0	NA	1.24E-14	2.563226083	1	1	0.436773917	2	1	0.563226083	unphased	1.216352531	1.216352531	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214205473	6	84889033	A	G	KIAA1009	CCDS34494.2	r.?	-	-	intronic	28	0	0	50	13	26	0	0	NA	0	0	NA	3.65E-19	2.563226083	1	1	0.436773917	2	1	0.563226083	unphased	1.328256963	1.328256963	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214205667	6	87946913	A	G	ZNF292	CCDS47457.1	r.?	-	-	intronic	42	0	0	72	9	12.5	0	0	NA	0	0	NA	1.25E-10	2.563226083	1	1	0.436773917	2	1	0.563226083	unphased	0.638585079	1.133798838	0.563226083	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214205694	6	88249738	T	G	RARS2	CCDS5011.1	r.?	-	-	intronic	39	0	0	69	27	39.13043478	0	0	NA	0	0	NA	6.80E-44	2.563226083	1	1	0.436773917	2	1	0.563226083	unphased	1.999048942	1.278797074	1.563226083	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214205894	6	91509839	A	G	-	-	-	-	-	-	29	0	0	61	16	26.2295082	0	0	NA	0	0	NA	2.50E-23	2.563226083	1	1	0.436773917	2	1	0.563226083	unphased	1.339981804	1.339981804	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214205952	6	92615048	C	G	-	-	-	-	-	-	30	0	0	57	9	15.78947368	0	0	NA	0	0	NA	1.42E-11	2.563226083	1	1	0.436773917	2	1	0.563226083	unphased	0.806633783	0.806633783	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214206104	6	95185445	A	G	-	-	-	-	-	-	35	0	0	61	13	21.31147541	0	0	NA	0	0	NA	6.41E-18	2.563226083	1	1	0.436773917	2	1	0.563226083	unphased	1.088735216	1.088735216	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214206223	6	97750663	T	G	-	-	-	-	-	-	21	0	0	73	4	5.479452055	0	0	NA	0	0	NA	0.000516741	2.563226083	1	1	0.436773917	2	1	0.563226083	unphased	0.279927706	0.49700771	0.563226083	0.0375	0.9625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214206248	6	98364778	C	G	-	-	-	-	-	-	31	0	0	53	14	26.41509434	0	0	NA	0	0	NA	1.22E-20	2.563226083	1	1	0.436773917	2	1	0.563226083	unphased	1.349462807	1.349462807	1	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214206684	6	106921964	A	G	-	-	-	-	-	-	35	0	0	75	22	29.33333333	0	0	NA	0	0	NA	9.55E-33	2.563226083	1	1	0.436773917	2	1	0.563226083	unphased	1.498546318	0.958624177	1.563226083	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214207275	6	117236832	C	G	RFX6	CCDS5113.1	r.?	-	-	intronic	41	0	0	63	16	25.3968254	0	0	NA	0	0	NA	4.48E-23	3.675145481	2	1	0.324854519	2	2	0.675145481	unphased	1.579834927	1.192459175	1.324854519	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214207697	6	122647960	A	G	-	-	-	-	-	-	26	0	0	57	12	21.05263158	0	0	NA	0	0	NA	1.40E-16	3.675145481	2	1	0.324854519	2	2	0.675145481	unphased	1.309600005	1.309600005	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214207794	6	123720920	T	G	TRDN	ENST00000334268	r.?	-	-	intronic	37	0	0	73	10	13.69863014	0	0	NA	0	0	NA	4.56E-12	3.675145481	2	1	0.324854519	2	2	0.675145481	unphased	0.85213699	0.85213699	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214208071	6	128057347	A	G	THEMIS	CCDS34534.1	r.?	-	-	intronic	33	0	0	69	8	11.5942029	0	0	NA	0	0	NA	2.49E-09	3.675145481	2	1	0.324854519	2	2	0.675145481	unphased	0.721228989	1.068257152	0.675145481	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214208094	6	128337736	C	G	PTPRK	CCDS47473.1	r.?	-	-	intronic	30	0	0	69	17	24.63768116	0	0	NA	0	0	NA	3.56E-24	3.675145481	2	1	0.324854519	2	2	0.675145481	unphased	1.532611601	1.156815015	1.324854519	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214210390	6	159760213	A	G	-	-	-	-	-	-	33	0	0	63	21	33.33333333	0	0	NA	0	0	NA	1.08E-32	4.7421074	2	2	0.2578926	3	2	0.7421074	unphased	2.429187315	0.885883359	2.7421074	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214210398	6	159886013	C	G	-	-	-	-	-	-	20	0	0	64	19	29.6875	0	0	NA	0	0	NA	1.34E-28	4.7421074	2	2	0.2578926	3	2	0.7421074	unphased	2.163494953	1.081747476	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214211086	6	167723470	A	G	UNC93A	CCDS5300.1	r.?	-	-	intronic	17	0	0	76	20	26.31578947	0	0	NA	0	0	NA	7.96E-29	4.7421074	2	2	0.2578926	3	2	0.7421074	unphased	1.917779459	0.95888973	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214212009	7	8693880	C	G	NXPH1	CCDS47540.1	r.?	-	-	intronic	36	0	0	55	23	41.81818182	0	0	NA	0	0	NA	1.91E-38	1.755712721	1	0	0.244287279	2	0	0.755712721	unphased	1.798669948	1.024467116	1.755712721	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214212041	7	9355741	T	G	-	-	-	-	-	-	42	0	0	64	24	37.5	0	0	NA	0	0	NA	1.23E-38	1.755712721	1	0	0.244287279	2	0	0.755712721	unphased	1.612937725	0.918679751	1.755712721	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214212095	7	10425131	A	G	-	-	-	-	-	-	24	0	0	45	21	46.66666667	0	0	NA	0	0	NA	1.60E-36	1.755712721	1	0	0.244287279	2	0	0.755712721	unphased	2.007211391	1.143245912	1.755712721	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214212276	7	14661671	C	G	DGKB	CCDS47547.1	r.?	-	-	intronic	30	0	0	51	14	27.45098039	0	0	NA	0	0	NA	6.64E-21	1.755712721	1	0	0.244287279	2	0	0.755712721	unphased	1.180712583	1.180712583	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214213348	7	35882094	C	G	Sep-07	ENST00000435235	r.?	-	-	intronic	29	0	0	51	5	9.803921569	0	0	NA	0	0	NA	6.06E-06	1.755712721	1	0	0.244287279	2	0	0.755712721	unphased	0.421683065	0.55799387	0.755712721	0.0175	0.9825	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214213516	7	38810593	A	G	VPS41	CCDS5457.1	r.?	-	-	intronic	24	0	0	45	18	40	0	0	NA	0	0	NA	5.76E-30	1.755712721	1	0	0.244287279	2	0	0.755712721	unphased	1.720466906	0.979925068	1.755712721	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214213630	7	41375966	A	G	ENSG00000236089	ENST00000443116	r.?	-	-	intronic	32	0	0	56	28	50	0	0	NA	0	0	NA	2.49E-49	1.755712721	1	0	0.244287279	2	0	0.755712721	unphased	2.150583633	1.224906334	1.755712721	0	0.99625	0.00375	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214214030	7	48991414	C	G	-	-	-	-	-	-	34	0	0	48	10	20.83333333	0	0	NA	0	0	NA	5.37E-14	1.755712721	1	0	0.244287279	2	0	0.755712721	unphased	0.896076514	0.896076514	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214214366	7	54218231	C	G	-	-	-	-	-	-	30	0	0	58	15	25.86206897	0	0	NA	0	0	NA	7.42E-22	1.755712721	1	0	0.244287279	2	0	0.755712721	unphased	1.112370845	1.112370845	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214214659	7	57577006	C	G	-	-	-	-	-	-	36	0	0	79	6	7.594936709	0	0	NA	0	0	NA	3.18E-06	4	2	2	1	NA	NA	NA	unphased	0.49712313	0.49712313	1	0.06125	0.93875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214218283	7	62721615	C	G	-	-	-	-	-	-	32	0	0	63	20	31.74603175	0	0	NA	0	0	NA	1.05E-30	4	2	2	1	NA	NA	NA	unphased	2.077922078	1.038961039	2	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214218323	7	63026840	A	G	-	-	-	-	-	-	12	0	0	111	17	15.31531532	0	0	NA	0	0	NA	2.23E-20	4	2	2	1	NA	NA	NA	unphased	1.002457002	1.002457002	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214218419	7	63879042	C	G	-	-	-	-	-	-	32	0	0	82	22	26.82926829	0	0	NA	0	0	NA	9.09E-32	4	2	2	1	NA	NA	NA	unphased	1.756097561	0.87804878	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214219723	7	72977538	A	G	-	-	-	-	-	-	13	0	0	44	18	40.90909091	0	0	NA	0	0	NA	3.47E-30	3	2	1	1	NA	NA	NA	unphased	2.268595041	1.134297521	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214219871	7	75397737	A	G	CCL26	CCDS5578.1	r.?	-	-	downstream	16	0	0	49	13	26.53061224	0	0	NA	0	0	NA	2.71E-19	3	2	1	1	NA	NA	NA	unphased	1.471243043	1.471243043	1	0	0.99625	0.00375	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214220105	7	77731680	A	G	MAGI2	CCDS5594.1	r.?	-	-	intronic	39	0	0	74	22	29.72972973	0	0	NA	0	0	NA	6.78E-33	3	2	1	1	NA	NA	NA	unphased	1.648648649	0.824324324	2	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214220233	7	79528372	A	G	-	-	-	-	-	-	40	0	0	69	9	13.04347826	0	0	NA	0	0	NA	8.45E-11	3	2	1	1	NA	NA	NA	unphased	0.723320158	0.723320158	1	0.00375	0.99625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214220401	7	82344719	C	G	-	-	-	-	-	-	32	0	0	77	17	22.07792208	0	0	NA	0	0	NA	2.82E-23	3	2	1	1	NA	NA	NA	unphased	1.224321133	1.224321133	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214220499	7	83985588	T	G	SEMA3A	ENST00000424555	r.?	-	-	intronic	26	0	0	39	12	30.76923077	0	0	NA	0	0	NA	8.43E-19	3	2	1	1	NA	NA	NA	unphased	1.706293706	0.853146853	2	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214220616	7	86187684	A	G	-	-	-	-	-	-	34	0	0	57	7	12.28070175	0	0	NA	0	0	NA	1.66E-08	3	2	1	1	NA	NA	NA	unphased	0.681020734	0.681020734	1	0.0075	0.9925	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214220973	7	92890308	C	G	CCDC132	CCDS43617.1	r.?	-	-	intronic	18	0	0	68	25	36.76470588	0	0	NA	0	0	NA	6.41E-40	3	2	1	1	NA	NA	NA	unphased	2.038770053	1.019385027	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214220978	7	92969816	T	G	CCDC132	CCDS43617.1	r.?	-	-	intronic	37	0	0	43	17	39.53488372	0	0	NA	0	0	NA	2.84E-28	3	2	1	1	NA	NA	NA	unphased	2.192389006	1.096194503	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214220984	7	93066610	A	G	CALCR	CCDS5631.1	r.?	-	-	intronic	41	0	0	63	26	41.26984127	0	0	NA	0	0	NA	4.45E-43	3	2	1	1	NA	NA	NA	unphased	2.288600289	1.144300144	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214220991	7	93118861	A	G	CALCR	CCDS5631.1	r.?	-	-	intronic	32	0	0	67	27	40.29850746	0	0	NA	0	0	NA	2.52E-44	3	2	1	1	NA	NA	NA	unphased	2.234735414	1.117367707	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214221308	7	97985493	C	G	BAIAP2L1	CCDS34687.1	r.?	-	-	intronic	31	0	0	60	6	10	0	0	NA	0	0	NA	6.21E-07	3	2	1	1	NA	NA	NA	unphased	0.554545455	0.554545455	1	0.01625	0.98375	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214221993	7	106075172	C	G	-	-	-	-	-	-	31	0	0	73	26	35.61643836	0	0	NA	0	0	NA	5.09E-41	3	2	1	1	NA	NA	NA	unphased	1.9750934	0.9875467	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214222278	7	110778800	C	G	IMMP2L	CCDS5753.1	r.?	-	-	intronic	37	0	0	68	17	25	0	0	NA	0	0	NA	2.69E-24	3	2	1	1	NA	NA	NA	unphased	1.386363636	1.386363636	1	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214222435	7	113839489	A	G	FOXP2	ENST00000484307	r.?	-	-	intronic	42	0	0	63	11	17.46031746	0	0	NA	0	0	NA	2.37E-14	3	2	1	1	NA	NA	NA	unphased	0.968253968	0.968253968	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214222706	7	118600123	A	G	-	-	-	-	-	-	32	0	0	61	27	44.26229508	0	0	NA	0	0	NA	9.98E-46	3	2	1	1	NA	NA	NA	unphased	2.454545455	1.227272727	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214222946	7	122716224	T	G	-	-	-	-	-	-	33	0	0	65	24	36.92307692	0	0	NA	0	0	NA	1.94E-38	3	2	1	1	NA	NA	NA	unphased	2.047552448	1.023776224	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214223123	7	125776511	C	G	-	-	-	-	-	-	37	0	0	64	10	15.625	102	1	0.980392157	141	25	17.73049645	1.16E-12	3	2	1	1	NA	NA	NA	unphased	0.866477273	0.866477273	1	0.00125	0.99875	0	2	1	6.15E-31	0.400272124	YES	1_1	somatic	custom.pulldown.HiSeq
1352322	PD9768b	1214223160	7	126468491	T	G	GRM8	CCDS5794.1	r.?	-	-	intronic	33	0	0	69	19	27.53623188	0	0	NA	0	0	NA	6.95E-28	3	2	1	1	NA	NA	NA	unphased	1.527009223	0.763504611	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214223996	7	138805399	T	G	-	-	-	-	-	-	29	0	0	64	23	35.9375	0	0	NA	0	0	NA	1.44E-36	3	2	1	1	NA	NA	NA	unphased	1.992897727	0.996448864	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214224560	7	144498206	C	G	TPK1	CCDS5888.1	r.?	-	-	intronic	33	0	0	64	15	23.4375	0	0	NA	0	0	NA	3.87E-21	3	2	1	1	NA	NA	NA	unphased	1.299715909	1.299715909	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214224589	7	145033617	A	G	-	-	-	-	-	-	31	0	0	55	26	47.27272727	0	0	NA	0	0	NA	4.61E-45	3	2	1	1	NA	NA	NA	unphased	2.621487603	1.310743802	2	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214224652	7	146191939	A	G	CNTNAP2	CCDS5889.1	r.?	-	-	intronic	36	0	0	79	14	17.72151899	0	0	NA	0	0	NA	5.60E-18	3	2	1	1	NA	NA	NA	unphased	0.98273878	0.98273878	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214224703	7	146800486	A	G	CNTNAP2	CCDS5889.1	r.?	-	-	intronic	31	0	0	56	12	21.42857143	0	0	NA	0	0	NA	1.11E-16	3	2	1	1	NA	NA	NA	unphased	1.188311688	1.188311688	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214225413	7	152667239	C	G	-	-	-	-	-	-	42	0	0	58	25	43.10344828	0	0	NA	0	0	NA	4.44E-42	3	2	1	1	NA	NA	NA	unphased	2.390282132	1.195141066	2	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214225871	7	157962718	A	G	PTPRN2	CCDS5949.1	r.?	-	-	intronic	8	0	0	57	9	15.78947368	1	0	0	2	0	0	1.42E-11	3	2	1	1	NA	NA	NA	unphased	0.875598086	0.875598086	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214226291	8	2908962	T	G	CSMD1	ENST00000318252	r.?	-	-	intronic	38	0	0	57	10	17.54385965	0	0	NA	0	0	NA	3.40E-13	2.174127563	2	0	0.825872437	2	1	0.174127563	unphased	0.827996861	0.827996861	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214226481	8	5784533	A	G	-	-	-	-	-	-	47	0	0	59	6	10.16949153	0	0	NA	0	0	NA	5.61E-07	1.721104505	1	0	0.278895495	2	0	0.721104505	unphased	0.433887361	0.601698309	0.721104505	0.0175	0.9825	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214227314	8	18697308	C	G	PSD3	CCDS43720.1	r.?	-	-	intronic	35	15	42.85714286	46	29	63.04347826	0	0	NA	0	0	NA	3.00E-55	1.721104505	1	0	0.278895495	2	0	0.721104505	unphased	2.689787228	1.562826208	1.721104505	0	0.9525	0.0475	2	9.02E-26	1	1	NA	NA	NA	NA
1352322	PD9768b	1214227315	8	18697309	C	G	PSD3	CCDS43720.1	r.?	-	-	intronic	35	15	42.85714286	46	29	63.04347826	0	0	NA	0	0	NA	3.00E-55	1.721104505	1	0	0.278895495	2	0	0.721104505	unphased	2.689787228	1.562826208	1.721104505	0	0.95125	0.04875	2	9.02E-26	1	1	NA	NA	NA	NA
1352322	PD9768b	1214227397	8	20473133	C	G	-	-	-	-	-	-	24	0	0	45	18	40	0	0	NA	0	0	NA	5.76E-30	1.721104505	1	0	0.278895495	2	0	0.721104505	unphased	1.70662362	0.991586284	1.721104505	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214227403	8	20542298	C	G	-	-	-	-	-	-	21	0	0	22	5	22.72727273	0	0	NA	0	0	NA	7.67E-08	1.721104505	1	0	0.278895495	2	0	0.721104505	unphased	0.969672512	0.969672512	1	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214227945	8	30128195	C	G	-	-	-	-	-	-	21	0	0	44	4	9.090909091	0	0	NA	0	0	NA	7.23E-05	1.721104505	1	0	0.278895495	2	0	0.721104505	unphased	0.387869005	0.537881821	0.721104505	0.03	0.97	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214228701	8	40385942	T	G	ZMAT4	CCDS34885.1	r.?	-	-	downstream	42	0	0	79	17	21.51898734	0	0	NA	0	0	NA	4.55E-23	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	1.53361253	0.969822573	1.581333094	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214228853	8	42044931	T	G	PLAT	CCDS6126.1	r.733a>c	c.524A>C	p.N175T	missense	17	0	0	72	20	27.77777778	185	0	0	164	45	27.43902439	2.32E-29	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	1.979663233	0.989831617	2	0	0.99875	0.00125	2	1	7.82E-64	1	YES	1_1	somatic	custom.pulldown.HiSeq
1352322	PD9768b	1214229668	8	47641343	A	G	-	-	-	-	-	-	42	0	0	74	6	8.108108108	0	0	NA	0	0	NA	2.16E-06	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	0.577847646	0.994004388	0.581333094	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214229811	8	49399133	A	G	-	-	-	-	-	-	31	0	0	97	23	23.71134021	0	0	NA	0	0	NA	9.40E-32	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	1.689856863	1.068628026	1.581333094	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214229823	8	49540143	A	G	-	-	-	-	-	-	7	0	0	100	26	26	0	0	NA	0	0	NA	7.29E-37	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	1.852964786	0.926482393	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214230144	8	53183089	A	G	ST18	CCDS6149.1	r.?	-	-	intronic	32	0	0	85	18	21.17647059	0	0	NA	0	0	NA	3.35E-24	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	1.509202088	0.954385951	1.581333094	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214230408	8	56028136	A	G	XKR4	CCDS34893.1	r.?	-	-	intronic	27	0	0	92	11	11.95652174	0	0	NA	0	0	NA	1.81E-12	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	0.852115913	0.852115913	1	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214230748	8	60087632	A	G	-	-	-	-	-	-	18	0	0	66	12	18.18181818	0	0	NA	0	0	NA	9.36E-16	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	1.295779571	1.295779571	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214230924	8	62267555	A	G	CLVS1	CCDS6176.1	r.?	-	-	intronic	42	0	0	92	24	26.08695652	0	0	NA	0	0	NA	3.47E-34	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	1.859161993	0.929580996	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214231023	8	63728661	A	G	NKAIN3	ENST00000328472	r.?	-	-	intronic	32	0	0	100	17	17	0	0	NA	0	0	NA	3.43E-21	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	1.211553899	1.211553899	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214231107	8	64677796	C	G	-	-	-	-	-	-	29	0	0	66	17	25.75757576	0	0	NA	0	0	NA	1.52E-24	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	1.835687725	0.917843863	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214231118	8	64935874	A	G	-	-	-	-	-	-	43	0	0	85	18	21.17647059	0	0	NA	0	0	NA	3.35E-24	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	1.509202088	0.954385951	1.581333094	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214231205	8	66029631	T	G	-	-	-	-	-	-	28	0	0	105	35	33.33333333	0	0	NA	0	0	NA	1.81E-53	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	2.37559588	0.920298076	2.581333094	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214231320	8	67254061	C	G	-	-	-	-	-	-	28	0	0	83	13	15.6626506	0	0	NA	0	0	NA	4.66E-16	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	1.116243847	1.116243847	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214231422	8	68221099	C	G	ARFGEF1	CCDS6199.1	r.?	-	-	intronic	44	0	0	82	10	12.19512195	0	0	NA	0	0	NA	1.51E-11	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	0.869120444	0.869120444	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214232294	8	77787047	C	G	-	-	-	-	-	-	20	0	0	66	22	33.33333333	0	0	NA	0	0	NA	3.52E-34	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	2.37559588	0.920298076	2.581333094	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214232295	8	77803915	C	G	-	-	-	-	-	-	36	0	0	93	8	8.602150538	0	0	NA	0	0	NA	2.73E-08	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	0.613057001	1.054570964	0.581333094	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214232791	8	83864102	A	G	-	-	-	-	-	-	25	0	0	68	8	11.76470588	0	0	NA	0	0	NA	2.21E-09	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	0.838445605	0.838445605	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214233366	8	89167647	C	G	MMP16	CCDS6246.1	r.?	-	-	intronic	34	0	0	59	4	6.779661017	0	0	NA	0	0	NA	0.00022841	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	0.483172043	0.831144912	0.581333094	0.00375	0.99625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214233376	8	89361738	T	G	-	-	-	-	-	-	31	0	0	78	22	28.20512821	0	0	NA	0	0	NA	2.58E-32	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	2.010119591	1.005059795	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214233738	8	94036352	A	G	-	-	-	-	-	-	30	0	0	82	17	20.73170732	0	0	NA	0	0	NA	9.09E-23	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	1.477504755	1.477504755	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214234107	8	97472990	A	G	-	-	-	-	-	-	34	0	0	84	7	8.333333333	0	0	NA	0	0	NA	2.53E-07	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	0.59389897	1.021615621	0.581333094	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214234383	8	100392265	A	G	VPS13B	CCDS6280.1	r.?	-	-	intronic	36	0	0	73	25	34.24657534	0	0	NA	0	0	NA	5.49E-39	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	2.440680698	0.945511722	2.581333094	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214234448	8	101268397	C	G	RNF19A	CCDS6286.1	r.?	-	-	downstream	30	0	0	115	18	15.65217391	0	0	NA	0	0	NA	1.14E-21	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	1.115497196	1.115497196	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214234569	8	102170891	T	G	-	-	-	-	-	-	36	0	0	96	28	29.16666667	0	0	NA	0	0	NA	3.52E-41	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	2.078646395	1.039323197	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214234649	8	102866235	C	G	NCALD	CCDS6292.1	r.?	-	-	intronic	35	0	0	73	19	26.02739726	0	0	NA	0	0	NA	2.35E-27	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	1.854917331	0.927458665	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214235192	8	108733688	T	G	-	-	-	-	-	-	32	0	0	66	25	37.87878788	0	0	NA	0	0	NA	2.57E-40	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	2.699540772	1.045793268	2.581333094	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214235296	8	110065787	A	G	-	-	-	-	-	-	36	0	0	87	15	17.24137931	0	0	NA	0	0	NA	5.73E-19	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	1.22875649	1.22875649	1	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214235358	8	110717846	C	G	-	-	-	-	-	-	24	0	0	104	11	10.57692308	0	0	NA	0	0	NA	7.11E-12	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	0.753794846	0.753794846	1	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214235364	8	110832712	T	G	-	-	-	-	-	-	18	0	0	34	6	17.64705882	0	0	NA	0	0	NA	1.86E-08	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	1.257668407	1.257668407	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214235470	8	112190776	A	G	-	-	-	-	-	-	41	0	0	60	5	8.333333333	0	0	NA	0	0	NA	1.36E-05	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	0.59389897	1.021615621	0.581333094	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214235519	8	112728300	A	G	-	-	-	-	-	-	40	0	0	90	23	25.55555556	0	0	NA	0	0	NA	1.36E-32	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	1.821290175	0.910645087	2	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214235681	8	114803116	C	G	-	-	-	-	-	-	29	0	0	62	18	29.03225806	0	0	NA	0	0	NA	5.72E-27	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	2.069067379	1.03453369	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214236028	8	119062570	T	G	EXT1	CCDS6324.1	r.?	-	-	intronic	30	0	0	97	13	13.40206186	0	0	NA	0	0	NA	3.85E-15	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	0.955136488	0.955136488	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214236089	8	119713733	C	G	-	-	-	-	-	-	31	0	0	83	6	7.228915663	0	0	NA	0	0	NA	4.24E-06	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	0.515189468	0.88622078	0.581333094	0.00375	0.99625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214236180	8	120781201	A	G	TAF2	CCDS34937.1	r.?	-	-	intronic	28	0	0	71	14	19.71830986	0	0	NA	0	0	NA	1.13E-18	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	1.40528207	1.40528207	1	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214236575	8	124598135	C	G	-	-	-	-	-	-	39	0	0	82	12	14.63414634	0	0	NA	0	0	NA	1.46E-14	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	1.042944533	1.042944533	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214236858	8	127791033	C	G	-	-	-	-	-	-	25	0	0	82	10	12.19512195	0	0	NA	0	0	NA	1.51E-11	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	0.869120444	0.869120444	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214237305	8	132524161	A	G	-	-	-	-	-	-	31	0	0	58	18	31.03448276	0	0	NA	0	0	NA	1.42E-27	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	2.211761681	1.105880841	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214237337	8	132970035	A	G	EFR3A	CCDS34942.2	r.?	-	-	intronic	38	0	0	91	20	21.97802198	0	0	NA	0	0	NA	4.44E-27	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	1.566326954	0.99051045	1.581333094	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214237366	8	133380391	A	G	KCNQ3	CCDS34943.1	r.?	-	-	intronic	31	0	0	88	22	25	0	0	NA	0	0	NA	5.27E-31	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	1.78169691	0.890848455	2	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214237480	8	134774155	A	G	-	-	-	-	-	-	32	0	0	76	15	19.73684211	0	0	NA	0	0	NA	6.51E-20	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	1.406602824	1.406602824	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214237519	8	135264286	C	G	-	-	-	-	-	-	23	0	0	54	6	11.11111111	0	0	NA	0	0	NA	3.29E-07	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	0.791865293	0.791865293	1	0.00375	0.99625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214237567	8	135776603	A	G	-	-	-	-	-	-	39	0	0	91	27	29.67032967	0	0	NA	0	0	NA	5.35E-40	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	2.114541388	1.057270694	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214237731	8	137642565	A	G	-	-	-	-	-	-	32	0	0	79	17	21.51898734	0	0	NA	0	0	NA	4.55E-23	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	1.53361253	0.969822573	1.581333094	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214237839	8	138833131	A	G	-	-	-	-	-	-	37	0	0	72	24	33.33333333	0	0	NA	0	0	NA	3.76E-37	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	2.37559588	0.920298076	2.581333094	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214237862	8	138970394	C	G	-	-	-	-	-	-	41	0	0	78	14	17.94871795	0	0	NA	0	0	NA	4.63E-18	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	1.279167012	1.279167012	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214237964	8	139892276	A	G	COL22A1	CCDS6376.1	r.?	-	-	intronic	20	0	0	93	14	15.05376344	0	0	NA	0	0	NA	6.26E-17	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	1.072849752	1.072849752	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214237980	8	140006918	A	G	-	-	-	-	-	-	23	0	0	90	8	8.888888889	0	0	NA	0	0	NA	2.10E-08	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	0.633492235	1.089723329	0.581333094	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214238759	9	1691059	C	G	-	-	-	-	-	-	35	0	0	55	5	9.090909091	0	0	NA	0	0	NA	8.83E-06	3	2	1	1	NA	NA	NA	unphased	0.504132231	0.504132231	1	0.0325	0.9675	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214239005	9	5263805	A	G	-	-	-	-	-	-	29	0	0	63	16	25.3968254	0	0	NA	0	0	NA	4.48E-23	3	2	1	1	NA	NA	NA	unphased	1.408369408	1.408369408	1	0	0.99625	0.00375	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214239232	9	8281117	T	G	-	-	-	-	-	-	36	0	0	74	14	18.91891892	0	0	NA	0	0	NA	2.10E-18	3	2	1	1	NA	NA	NA	unphased	1.049140049	1.049140049	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214239417	9	11441249	C	G	-	-	-	-	-	-	40	0	0	74	9	12.16216216	0	0	NA	0	0	NA	1.61E-10	3	2	1	1	NA	NA	NA	unphased	0.674447174	0.674447174	1	0.0075	0.9925	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214239881	9	18361169	A	G	-	-	-	-	-	-	31	0	0	65	9	13.84615385	0	0	NA	0	0	NA	4.85E-11	3	2	1	1	NA	NA	NA	unphased	0.767832168	0.767832168	1	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214239959	9	19623621	C	G	SLC24A2	CCDS6493.1	r.?	-	-	intronic	31	0	0	59	20	33.89830508	0	0	NA	0	0	NA	2.21E-31	3	2	1	1	NA	NA	NA	unphased	1.8798151	0.93990755	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214239987	9	20305315	A	G	-	-	-	-	-	-	23	0	0	58	21	36.20689655	0	0	NA	0	0	NA	1.34E-33	3	2	1	1	NA	NA	NA	unphased	2.007836991	1.003918495	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214240148	9	23305238	T	G	-	-	-	-	-	-	32	0	0	61	19	31.14754098	0	0	NA	0	0	NA	4.64E-29	3	2	1	1	NA	NA	NA	unphased	1.727272727	0.863636364	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214240191	9	24060663	T	G	-	-	-	-	-	-	30	0	0	89	27	30.33707865	0	0	NA	0	0	NA	2.66E-40	3	2	1	1	NA	NA	NA	unphased	1.682328907	0.841164454	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214240524	9	30122794	A	G	-	-	-	-	-	-	31	0	0	54	17	31.48148148	0	0	NA	0	0	NA	3.02E-26	3	2	1	1	NA	NA	NA	unphased	1.745791246	0.872895623	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214241053	9	36835091	A	G	PAX5	CCDS6607.1	r.6717u>c	c.?	p.?	3'UTR variant	17	0	0	57	21	36.84210526	0	0	NA	0	0	NA	8.56E-34	3	2	1	1	NA	NA	NA	unphased	2.043062201	1.0215311	2	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214241282	9	40288039	A	G	-	-	-	-	-	-	9	0	0	34	6	17.64705882	0	0	NA	0	0	NA	1.86E-08	3	2	1	1	NA	NA	NA	unphased	0.978609626	0.978609626	1	0.00375	0.99625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214241653	9	44161085	C	G	-	-	-	-	-	-	34	0	0	72	11	15.27777778	0	0	NA	0	0	NA	1.12E-13	2.697349171	1	1	0.302650829	2	1	0.697349171	unphased	0.800983901	1.148612395	0.697349171	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214246983	9	75399126	C	G	TMC1	CCDS6643.1	r.?	-	-	intronic	43	0	0	65	16	24.61538462	0	0	NA	0	0	NA	7.85E-23	2.697349171	1	1	0.302650829	2	1	0.697349171	unphased	1.290536299	1.290536299	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214247121	9	77444385	C	G	TRPM6	CCDS6647.1	r.?	-	-	intronic	33	0	0	51	7	13.7254902	0	0	NA	0	0	NA	7.46E-09	2.697349171	1	1	0.302650829	2	1	0.697349171	unphased	0.71960051	1.031908462	0.697349171	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214247302	9	80320368	C	G	-	-	-	-	-	-	35	0	0	41	9	21.95121951	0	0	NA	0	0	NA	5.92E-13	2.697349171	1	1	0.302650829	2	1	0.697349171	unphased	1.150859352	1.150859352	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214247411	9	82423348	A	G	-	-	-	-	-	-	42	0	0	56	22	39.28571429	0	0	NA	0	0	NA	4.34E-36	2.697349171	1	1	0.302650829	2	1	0.697349171	unphased	2.059672889	1.213464456	1.697349171	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214247672	9	87085273	A	G	-	-	-	-	-	-	31	0	0	64	17	26.5625	0	0	NA	0	0	NA	8.43E-25	2.697349171	1	1	0.302650829	2	1	0.697349171	unphased	1.392619737	1.392619737	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214247675	9	87106631	C	G	-	-	-	-	-	-	28	0	0	62	25	40.32258065	0	0	NA	0	0	NA	3.68E-41	2.697349171	1	1	0.302650829	2	1	0.697349171	unphased	2.114033757	1.245491377	1.697349171	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214247754	9	88778518	C	G	-	-	-	-	-	-	31	0	0	68	5	7.352941176	0	0	NA	0	0	NA	2.51E-05	2.697349171	1	1	0.302650829	2	1	0.697349171	unphased	0.385500273	0.552808104	0.697349171	0.0175	0.9825	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214247797	9	89425853	C	G	-	-	-	-	-	-	25	0	0	72	9	12.5	0	0	NA	0	0	NA	1.25E-10	2.697349171	1	1	0.302650829	2	1	0.697349171	unphased	0.655350465	0.939773778	0.697349171	0.0025	0.99625	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214247805	9	89571597	A	G	-	-	-	-	-	-	37	0	0	58	21	36.20689655	0	0	NA	0	0	NA	1.34E-33	2.697349171	1	1	0.302650829	2	1	0.697349171	unphased	1.898256518	1.118365361	1.697349171	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214247813	9	89648989	C	G	-	-	-	-	-	-	41	0	0	55	13	23.63636364	0	0	NA	0	0	NA	1.46E-18	2.697349171	1	1	0.302650829	2	1	0.697349171	unphased	1.239208151	1.239208151	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214247820	9	89907936	T	G	-	-	-	-	-	-	27	0	0	48	14	29.16666667	0	0	NA	0	0	NA	2.51E-21	2.697349171	1	1	0.302650829	2	1	0.697349171	unphased	1.529151084	1.529151084	1	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214247916	9	90855470	A	G	-	-	-	-	-	-	23	0	0	60	19	31.66666667	0	0	NA	0	0	NA	3.21E-29	3.236559885	2	1	0.763440115	3	1	0.236559885	unphased	1.830971236	0.915485618	2	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214248009	9	92102423	A	G	SEMA4D	CCDS6685.1	r.?	-	-	intronic	35	0	0	65	12	18.46153846	0	0	NA	0	0	NA	7.70E-16	3.236559885	2	1	0.763440115	3	1	0.236559885	unphased	1.067448818	1.067448818	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214248081	9	93325645	T	G	-	-	-	-	-	-	35	0	0	58	9	15.51724138	0	0	NA	0	0	NA	1.67E-11	3.236559885	2	1	0.763440115	3	1	0.236559885	unphased	0.897209136	0.897209136	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214248797	9	105089074	C	G	-	-	-	-	-	-	38	0	0	72	16	22.22222222	0	0	NA	0	0	NA	4.82E-22	2.370148363	1	1	0.629851637	2	1	0.370148363	unphased	1.092356202	1.092356202	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214248943	9	108066740	T	G	SLC44A1	CCDS6763.1	r.?	-	-	intronic	25	0	0	48	10	20.83333333	0	0	NA	0	0	NA	5.37E-14	2.370148363	1	1	0.629851637	2	1	0.370148363	unphased	1.024083939	1.024083939	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214249642	9	120105539	C	G	ASTN2	CCDS48009.1	r.?	-	-	intronic	32	0	0	75	8	10.66666667	0	0	NA	0	0	NA	4.89E-09	2.370148363	1	1	0.629851637	2	1	0.370148363	unphased	0.524330977	1.41654274	0.370148363	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214249670	9	120774686	T	G	-	-	-	-	-	-	35	0	0	65	25	38.46153846	0	0	NA	0	0	NA	1.60E-40	2.370148363	1	1	0.629851637	2	1	0.370148363	unphased	1.890616503	1.379862615	1.370148363	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214249719	9	121734581	T	G	-	-	-	-	-	-	38	0	0	53	21	39.62264151	0	0	NA	0	0	NA	1.30E-34	2.370148363	1	1	0.629851637	2	1	0.370148363	unphased	1.947691719	1.421518845	1.370148363	0	0.99625	0.00375	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214249733	9	121935878	C	G	DBC1	CCDS6822.1	r.?	-	-	intronic	27	0	0	71	22	30.98591549	0	0	NA	0	0	NA	2.34E-33	2.370148363	1	1	0.629851637	2	1	0.370148363	unphased	1.523144563	1.111663966	1.370148363	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214249782	9	122625335	C	G	-	-	-	-	-	-	30	0	0	70	10	14.28571429	0	0	NA	0	0	NA	2.95E-12	2.370148363	1	1	0.629851637	2	1	0.370148363	unphased	0.702228987	0.702228987	1	0.0075	0.9925	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214249828	9	123202448	T	G	CDK5RAP2	CCDS6823.1	r.?	-	-	intronic	26	0	0	69	24	34.7826087	0	0	NA	0	0	NA	1.11E-37	2.370148363	1	1	0.629851637	2	1	0.370148363	unphased	1.709774925	1.247875756	1.370148363	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214249883	9	124007188	A	G	GSN	CCDS6829.1	r.?	-	-	intronic	36	0	0	59	16	27.11864407	0	0	NA	0	0	NA	1.37E-23	2.370148363	1	1	0.629851637	2	1	0.370148363	unphased	1.333044857	1.333044857	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214249920	9	124401652	C	G	DAB2IP	CCDS6833.2	r.?	-	-	intronic	15	0	0	70	19	27.14285714	242	1	0.41322314	163	54	33.12883436	9.50E-28	2.370148363	1	1	0.629851637	2	1	0.370148363	unphased	1.334235075	1.334235075	1	0	0.99875	0.00125	2	1	1.95E-81	0.702706413	YES	1_1	somatic	custom.pulldown.HiSeq
1352322	PD9768b	1214250052	9	126356431	C	G	DENND1A	CCDS35133.1	r.?	-	-	intronic	28	0	0	70	24	34.28571429	0	0	NA	0	0	NA	1.68E-37	2.370148363	1	1	0.629851637	2	1	0.370148363	unphased	1.685349569	1.230048959	1.370148363	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214250739	9	134301830	C	G	BAT2L1	CCDS48044.1	r.?	-	-	upstream	21	0	0	67	12	17.91044776	0	0	NA	0	0	NA	1.14E-15	4.864050964	3	1	0.135949036	3	2	0.864050964	unphased	1.327075614	1.327075614	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214250835	9	135598655	A	G	C9orf98	CCDS6954.1	r.?	-	-	downstream	15	0	0	46	9	19.56521739	0	0	NA	0	0	NA	1.82E-12	2.687706236	2	0	0.312293764	2	1	0.687706236	unphased	1.023879283	1.023879283	1	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214251201	X	4204259	C	G	-	-	-	-	-	-	30	0	0	46	13	28.26086957	0	0	NA	0	0	NA	1.07E-19	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214251230	X	4701716	A	G	-	-	-	-	-	-	33	0	0	60	12	20	0	0	NA	0	0	NA	2.74E-16	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214251283	X	5571003	C	G	-	-	-	-	-	-	38	0	0	57	14	24.56140351	0	0	NA	0	0	NA	3.84E-20	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	1.183296044	1.183296044	1	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214251288	X	5606942	A	G	-	-	-	-	-	-	22	0	0	36	9	25	0	0	NA	0	0	NA	1.63E-13	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	1.204426331	1.204426331	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214251422	X	8075701	T	G	-	-	-	-	-	-	31	0	0	53	13	24.52830189	0	0	NA	0	0	NA	8.53E-19	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	1.181701306	1.181701306	1	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214252015	X	19423814	C	G	MAP3K15	CCDS35212.1	r.?	-	-	intronic	35	0	0	61	11	18.03278689	0	0	NA	0	0	NA	1.62E-14	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	0.868766534	0.868766534	1	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214252036	X	19692285	A	G	SH3KBP1	CCDS14193.1	r.?	-	-	intronic	35	0	0	57	16	28.07017544	0	0	NA	0	0	NA	7.28E-24	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	1.352338336	1.352338336	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214252182	X	23827609	C	G	-	-	-	-	-	-	21	0	0	66	15	22.72727273	0	0	NA	0	0	NA	6.45E-21	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	1.094933028	1.094933028	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214252314	X	27156637	A	G	-	-	-	-	-	-	25	0	0	51	10	19.60784314	0	0	NA	0	0	NA	1.04E-13	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	0.944648103	0.944648103	1	0.00125	0.9975	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214252330	X	27685225	T	G	-	-	-	-	-	-	33	0	0	33	8	24.24242424	1	0	0	0	0	NA	4.85E-12	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	1.167928563	1.167928563	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214252334	X	27777377	C	G	-	-	-	-	-	-	10	0	0	59	11	18.6440678	0	0	NA	0	0	NA	1.10E-14	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	0.898216247	0.898216247	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214252346	X	28232739	C	G	-	-	-	-	-	-	34	0	0	42	12	28.57142857	0	0	NA	0	0	NA	2.35E-18	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	1.376487235	1.376487235	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214252564	X	33230598	A	G	DMD	CCDS14233.1	r.?	-	-	upstream	31	0	0	65	20	30.76923077	0	0	NA	0	0	NA	2.18E-30	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	1.482370869	1.16515619	1.272250778	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214252571	X	33605123	C	G	-	-	-	-	-	-	37	0	0	64	17	26.5625	0	0	NA	0	0	NA	8.43E-25	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	1.279702976	1.279702976	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214252747	X	39260465	C	G	-	-	-	-	-	-	19	0	0	47	6	12.76595745	0	0	NA	0	0	NA	1.41E-07	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	0.615026211	0.615026211	1	0.02	0.98	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214253132	X	46898867	T	G	PHF16	CCDS14271.1	r.?	-	-	intronic	27	0	0	47	4	8.510638298	0	0	NA	0	0	NA	9.39E-05	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	0.410017474	1.506028662	0.272250778	0.0025	0.99625	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214253294	X	49940068	T	G	-	-	-	-	-	-	29	0	0	52	8	15.38461538	0	0	NA	0	0	NA	2.42E-10	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	0.741185434	0.741185434	1	0.005	0.995	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214253454	X	53926981	C	G	-	-	-	-	-	-	25	0	0	53	11	20.75471698	0	0	NA	0	0	NA	3.07E-15	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	0.999901105	0.999901105	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214254448	X	68131324	T	G	-	-	-	-	-	-	21	0	0	46	5	10.86956522	0	0	NA	0	0	NA	3.61E-06	2	1	1	1	NA	NA	NA	unphased	0.494071146	0.494071146	1	0.05375	0.94625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214254648	X	72390641	C	G	-	-	-	-	-	-	26	0	0	51	8	15.68627451	0	0	NA	0	0	NA	2.05E-10	2	1	1	1	NA	NA	NA	unphased	0.713012478	0.713012478	1	0.005	0.995	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214254710	X	73803618	C	G	RLIM	CCDS14427.1	r.?	-	-	downstream	8	0	0	44	13	29.54545455	0	0	NA	0	0	NA	5.49E-20	2	1	1	1	NA	NA	NA	unphased	1.342975207	1.342975207	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214254722	X	74147361	A	G	KIAA2022	CCDS35337.1	r.?	-	-	upstream	29	0	0	49	11	22.44897959	0	0	NA	0	0	NA	1.19E-15	2	1	1	1	NA	NA	NA	unphased	1.020408163	1.020408163	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214254874	X	77749257	A	G	-	-	-	-	-	-	29	0	0	61	12	19.67213115	8	0	0	6	2	33.33333333	3.39E-16	2	1	1	1	NA	NA	NA	unphased	0.894187779	0.894187779	1	0.00125	0.99875	0	2	1	0.000370028	1	NA	NA	NA	NA
1352322	PD9768b	1214254928	X	79273074	C	G	TBX22	CCDS43975.1	r.?	-	-	intronic	31	0	0	56	10	17.85714286	0	0	NA	0	0	NA	2.82E-13	2	1	1	1	NA	NA	NA	unphased	0.811688312	0.811688312	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214254986	X	81021955	A	G	-	-	-	-	-	-	33	0	0	52	15	28.84615385	0	0	NA	0	0	NA	1.15E-22	2	1	1	1	NA	NA	NA	unphased	1.311188811	1.311188811	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214255051	X	83750336	T	G	HDX	CCDS35342.1	r.?	-	-	intronic	41	0	0	53	8	15.09433962	0	0	NA	0	0	NA	2.83E-10	2	1	1	1	NA	NA	NA	unphased	0.686106346	0.686106346	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214255089	X	84548412	A	G	POF1B	CCDS14452.1	r.?	-	-	intronic	30	0	0	59	13	22.03389831	0	0	NA	0	0	NA	3.99E-18	2	1	1	1	NA	NA	NA	unphased	1.001540832	1.001540832	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214255224	X	87769406	T	G	-	-	-	-	-	-	32	0	0	57	18	31.57894737	0	0	NA	0	0	NA	9.84E-28	2	1	1	1	NA	NA	NA	unphased	1.435406699	1.435406699	1	0	0.99625	0.00375	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214255236	X	87985808	A	G	-	-	-	-	-	-	28	0	0	58	12	20.68965517	0	0	NA	0	0	NA	1.76E-16	2	1	1	1	NA	NA	NA	unphased	0.940438871	0.940438871	1	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214255237	X	87999499	T	G	CPXCR1	CCDS14458.1	r.?	-	-	upstream	33	0	0	62	16	25.80645161	0	0	NA	0	0	NA	3.36E-23	2	1	1	1	NA	NA	NA	unphased	1.173020528	1.173020528	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214255312	X	89051836	T	G	-	-	-	-	-	-	40	0	0	53	11	20.75471698	0	0	NA	0	0	NA	3.07E-15	1.633981384	1	0	0.366018616	1	1	0.633981384	unphased	0.867430099	0.867430099	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214255350	X	90007826	A	G	-	-	-	-	-	-	27	0	0	42	8	19.04761905	0	0	NA	0	0	NA	3.96E-11	1.633981384	1	0	0.366018616	1	1	0.633981384	unphased	0.796083034	0.796083034	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214255432	X	92156772	C	G	-	-	-	-	-	-	31	0	0	63	14	22.22222222	1	0	0	0	0	NA	1.81E-19	2	1	1	1	NA	NA	NA	unphased	1.01010101	1.01010101	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214255560	X	95405826	A	G	-	-	-	-	-	-	35	0	0	52	5	9.615384615	0	0	NA	0	0	NA	6.68E-06	2	1	1	1	NA	NA	NA	unphased	0.437062937	0.437062937	1	0.09375	0.90625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214255569	X	95599038	A	G	-	-	-	-	-	-	36	0	0	52	14	26.92307692	0	0	NA	0	0	NA	9.04E-21	2	1	1	1	NA	NA	NA	unphased	1.223776224	1.223776224	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214255691	X	98845519	A	G	-	-	-	-	-	-	27	0	0	56	19	33.92857143	0	0	NA	0	0	NA	6.79E-30	2	1	1	1	NA	NA	NA	unphased	1.542207792	1.542207792	1	0	0.99625	0.00375	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214255789	X	101039888	T	G	-	-	-	-	-	-	32	0	0	46	5	10.86956522	0	0	NA	0	0	NA	3.61E-06	2	1	1	1	NA	NA	NA	unphased	0.494071146	0.494071146	1	0.05125	0.94875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214255914	X	104262119	C	G	IL1RAPL2	CCDS14517.1	r.?	-	-	intronic	35	0	0	53	10	18.86792453	0	0	NA	0	0	NA	1.57E-13	2	1	1	1	NA	NA	NA	unphased	0.857632933	0.857632933	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214255931	X	104873395	T	G	IL1RAPL2	CCDS14517.1	r.?	-	-	intronic	37	0	0	56	18	32.14285714	0	0	NA	0	0	NA	6.76E-28	2	1	1	1	NA	NA	NA	unphased	1.461038961	1.461038961	1	0	0.99625	0.00375	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214255947	X	105340361	C	G	-	-	-	-	-	-	39	0	0	60	13	21.66666667	0	0	NA	0	0	NA	5.07E-18	2	1	1	1	NA	NA	NA	unphased	0.984848485	0.984848485	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214256101	X	110028926	C	G	CHRDL1	CCDS48149.1	r.?	-	-	intronic	40	0	0	45	10	22.22222222	0	0	NA	0	0	NA	2.66E-14	2	1	1	1	NA	NA	NA	unphased	1.01010101	1.01010101	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214256145	X	111345947	A	G	-	-	-	-	-	-	39	0	0	54	19	35.18518519	0	0	NA	0	0	NA	2.97E-30	2	1	1	1	NA	NA	NA	unphased	1.599326599	1.599326599	1	0	0.99125	0.00875	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214256355	X	116646051	C	G	-	-	-	-	-	-	29	0	0	63	6	9.523809524	0	0	NA	0	0	NA	8.32E-07	2	1	1	1	NA	NA	NA	unphased	0.432900433	0.432900433	1	0.18125	0.81875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214256490	X	119400946	A	G	FAM70A	CCDS43986.1	r.?	-	-	intronic	47	0	0	58	11	18.96551724	0	0	NA	0	0	NA	8.96E-15	2	1	1	1	NA	NA	NA	unphased	0.862068966	0.862068966	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214256499	X	119550601	A	G	-	-	-	-	-	-	41	0	0	69	16	23.1884058	0	0	NA	0	0	NA	2.27E-22	2	1	1	1	NA	NA	NA	unphased	1.054018445	1.054018445	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214256553	X	120787007	C	G	-	-	-	-	-	-	36	0	0	45	11	24.44444444	0	0	NA	0	0	NA	4.24E-16	2	1	1	1	NA	NA	NA	unphased	1.111111111	1.111111111	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214256557	X	120882915	A	G	-	-	-	-	-	-	26	0	0	53	12	22.64150943	0	0	NA	0	0	NA	5.39E-17	2	1	1	1	NA	NA	NA	unphased	1.02915952	1.02915952	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214256992	X	131920471	C	G	HS6ST2	CCDS48169.1	r.?	-	-	intronic	27	0	0	52	11	21.15384615	0	0	NA	0	0	NA	2.44E-15	2	1	1	1	NA	NA	NA	unphased	0.961538462	0.961538462	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214257267	X	138810598	T	G	ATP11C	CCDS14668.1	r.4025a>c	c.?	p.?	3'UTR variant	34	0	0	49	16	32.65306122	0	0	NA	0	0	NA	4.37E-25	2	1	1	1	NA	NA	NA	unphased	1.484230056	1.484230056	1	0	0.99625	0.00375	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214257291	X	139321729	T	G	-	-	-	-	-	-	41	0	0	47	13	27.65957447	0	0	NA	0	0	NA	1.47E-19	2	1	1	1	NA	NA	NA	unphased	1.257253385	1.257253385	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214257413	X	142375516	A	G	-	-	-	-	-	-	29	0	0	69	17	24.63768116	0	0	NA	0	0	NA	3.56E-24	2	1	1	1	NA	NA	NA	unphased	1.119894598	1.119894598	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214257461	X	143864680	A	G	-	-	-	-	-	-	32	0	0	41	7	17.07317073	0	0	NA	0	0	NA	1.51E-09	2	1	1	1	NA	NA	NA	unphased	0.776053215	0.776053215	1	0.00375	0.99625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214257540	X	145584990	T	G	-	-	-	-	-	-	31	0	0	55	7	12.72727273	0	0	NA	0	0	NA	1.28E-08	2	1	1	1	NA	NA	NA	unphased	0.578512397	0.578512397	1	0.03	0.97	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214257580	X	146295168	C	G	MIR513A1	ENST00000385138	r.?	-	-	upstream	21	0	0	53	9	16.98113208	0	0	NA	0	0	NA	7.10E-12	2	1	1	1	NA	NA	NA	unphased	0.77186964	0.77186964	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214257680	X	149563285	T	G	MAMLD1	CCDS14693.2	r.?	-	-	intronic	28	0	0	54	9	16.66666667	0	0	NA	0	0	NA	8.48E-12	2	1	1	1	NA	NA	NA	unphased	0.757575758	0.757575758	1	0.00375	0.99625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1213998933	1	4580569	C	T	-	-	-	-	-	-	10	0	0	40	8	20	0	0	NA	0	0	NA	2.61E-11	2.087633076	2	0	0.912366924	2	1	0.087633076	unphased	0.926617524	0.926617524	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1213999413	1	12341946	A	T	VPS13D	CCDS30588.1	r.?	-	-	intronic	23	0	0	43	24	55.81395349	2	0	0	0	0	NA	4.35E-44	2.087633076	2	0	0.912366924	2	1	0.087633076	unphased	2.58590937	1.292954685	2	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1213999417	1	12374949	C	T	VPS13D	CCDS30588.1	r.?	-	-	intronic	32	0	0	49	10	20.40816327	0	0	NA	0	0	NA	6.72E-14	2.087633076	2	0	0.912366924	2	1	0.087633076	unphased	0.945528086	0.945528086	1	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214000323	1	18614335	C	T	IGSF21	CCDS184.1	r.?	-	-	intronic	16	0	0	84	32	38.0952381	0	0	NA	0	0	NA	2.82E-51	4.399047721	2	2	0.600952279	3	2	0.399047721	unphased	2.645524673	1.102739495	2.399047721	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214000356	1	19025371	G	T	PAX7	CCDS44074.1	r.?	-	-	intronic	8	0	0	74	43	58.10810811	0	0	NA	0	0	NA	6.50E-79	4.399047721	2	2	0.600952279	3	2	0.399047721	unphased	4.035318885	1.682050277	2.399047721	0	0.69	0.31	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214001515	1	37012000	C	T	-	-	-	-	-	-	34	0	0	81	12	14.81481481	0	0	NA	0	0	NA	1.26E-14	3.641171102	2	1	0.358828898	2	2	0.641171102	unphased	0.916537133	0.916537133	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214001524	1	37139362	C	T	-	-	-	-	-	-	26	0	0	77	13	16.88311688	0	0	NA	0	0	NA	1.67E-16	3.641171102	2	1	0.358828898	2	2	0.641171102	unphased	1.044495239	1.044495239	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214001694	1	39161263	C	T	-	-	-	-	-	-	33	0	0	64	17	26.5625	0	0	NA	0	0	NA	8.43E-25	3.641171102	2	1	0.358828898	2	2	0.641171102	unphased	1.643322438	0.821661219	2	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214002046	1	42832510	C	T	-	-	-	-	-	-	11	0	0	56	17	30.35714286	0	0	NA	0	0	NA	6.22E-26	3.641171102	2	1	0.358828898	2	2	0.641171102	unphased	1.878082786	0.939041393	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214002117	1	43698226	G	T	ENSG00000164012	ENST00000372492	r.1165g>u	c.1165G>T	p.E389D	missense	25	0	0	67	24	35.82089552	242	1	0.41322314	247	81	32.79352227	4.72E-38	3.641171102	2	1	0.358828898	2	2	0.641171102	unphased	2.21610471	1.108052355	2	0	1	0	2	1	7.29E-121	0.702706413	YES	1_1	somatic	custom.pulldown.HiSeq
1352322	PD9768b	1214002172	1	44611489	C	T	-	-	-	-	-	-	31	0	0	65	14	21.53846154	0	0	NA	0	0	NA	2.93E-19	3.641171102	2	1	0.358828898	2	2	0.641171102	unphased	1.332503986	1.332503986	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214002201	1	44992158	G	T	RNF220	CCDS510.1	r.?	-	-	intronic	30	0	0	61	30	49.18032787	1	0	0	0	0	NA	1.86E-52	3.641171102	2	1	0.358828898	2	2	0.641171102	unphased	3.042602778	1.521301389	2	0	0.98125	0.01875	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214002497	1	48703725	C	T	SLC5A9	CCDS44136.1	r.?	-	-	intronic	33	0	0	67	17	25.37313433	0	0	NA	0	0	NA	2.03E-24	3.641171102	2	1	0.358828898	2	2	0.641171102	unphased	1.569740836	1.155215965	1.358828898	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214002634	1	51287334	G	T	FAF1	CCDS554.1	r.?	-	-	intronic	41	0	0	65	15	23.07692308	0	0	NA	0	0	NA	5.00E-21	3.641171102	2	1	0.358828898	2	2	0.641171102	unphased	1.427682842	1.427682842	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214003727	1	65405731	A	T	JAK1	CCDS41346.1	r.?	-	-	intronic	40	0	0	82	29	35.36585366	0	0	NA	0	0	NA	1.81E-45	3.641171102	2	1	0.358828898	2	2	0.641171102	unphased	2.187952973	1.093976487	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214004201	1	72364080	C	T	NEGR1	CCDS661.1	r.?	-	-	intronic	9	0	0	62	15	24.19354839	0	0	NA	0	0	NA	2.28E-21	3.641171102	2	1	0.358828898	2	2	0.641171102	unphased	1.49676427	1.49676427	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214004207	1	72500662	C	T	NEGR1	CCDS661.1	r.?	-	-	intronic	30	0	0	79	26	32.91139241	0	0	NA	0	0	NA	5.99E-40	3.641171102	2	1	0.358828898	2	2	0.641171102	unphased	2.036104644	1.018052322	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214004222	1	72797730	A	T	-	-	-	-	-	-	22	0	0	31	14	45.16129032	0	0	NA	0	0	NA	1.49E-24	3.641171102	2	1	0.358828898	2	2	0.641171102	unphased	2.79395997	1.396979985	2	0	0.99625	0.00375	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214004340	1	74395219	G	T	-	-	-	-	-	-	33	0	0	71	17	23.94366197	0	0	NA	0	0	NA	6.12E-24	3.641171102	2	1	0.358828898	2	2	0.641171102	unphased	1.481304733	1.481304733	1	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214004514	1	76716432	C	T	ST6GALNAC3	CCDS672.1	r.?	-	-	intronic	44	0	0	67	8	11.94029851	0	0	NA	0	0	NA	1.96E-09	3.641171102	2	1	0.358828898	2	2	0.641171102	unphased	0.73870157	1.152113012	0.641171102	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214004669	1	78609105	C	T	GIPC2	CCDS685.1	r.?	-	-	downstream	38	0	0	78	6	7.692307692	0	0	NA	0	0	NA	2.95E-06	3.641171102	2	1	0.358828898	2	2	0.641171102	unphased	0.475894281	0.742226652	0.641171102	0.00625	0.99375	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214004753	1	79881990	C	T	-	-	-	-	-	-	40	0	0	71	16	22.53521127	0	0	NA	0	0	NA	3.77E-22	3.641171102	2	1	0.358828898	2	2	0.641171102	unphased	1.39416916	1.39416916	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214004763	1	80000807	A	T	-	-	-	-	-	-	45	0	0	73	14	19.17808219	0	0	NA	0	0	NA	1.71E-18	3.641171102	2	1	0.358828898	2	2	0.641171102	unphased	1.186476152	1.186476152	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214005437	1	87760272	C	T	-	-	-	-	-	-	23	0	0	62	18	29.03225806	0	0	NA	0	0	NA	5.72E-27	3.641171102	2	1	0.358828898	2	2	0.641171102	unphased	1.796117124	0.898058562	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214005647	1	90737227	G	T	-	-	-	-	-	-	37	0	0	69	20	28.98550725	0	0	NA	0	0	NA	8.73E-30	3.641171102	2	1	0.358828898	2	2	0.641171102	unphased	1.793224825	0.896612413	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214006247	1	98749160	G	T	-	-	-	-	-	-	30	0	0	76	21	27.63157895	0	0	NA	0	0	NA	1.07E-30	3.641171102	2	1	0.358828898	2	2	0.641171102	unphased	1.70946235	0.854731175	2	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214006270	1	99000965	C	T	-	-	-	-	-	-	39	0	0	53	13	24.52830189	0	0	NA	0	0	NA	8.53E-19	3.641171102	2	1	0.358828898	2	2	0.641171102	unphased	1.517474216	1.517474216	1	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214006288	1	99225327	C	T	SNX7	CCDS755.2	r.?	-	-	intronic	41	0	0	66	20	30.3030303	0	0	NA	0	0	NA	3.11E-30	3.641171102	2	1	0.358828898	2	2	0.641171102	unphased	1.874735045	0.937367522	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214006559	1	103460468	A	T	COL11A1	CCDS779.1	r.?	-	-	intronic	33	0	0	69	16	23.1884058	0	0	NA	0	0	NA	2.27E-22	3.641171102	2	1	0.358828898	2	2	0.641171102	unphased	1.43457986	1.43457986	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214006744	1	106254912	A	T	-	-	-	-	-	-	37	0	0	65	17	26.15384615	0	0	NA	0	0	NA	1.14E-24	3.641171102	2	1	0.358828898	2	2	0.641171102	unphased	1.618040554	1.190761072	1.358828898	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214006834	1	107714796	C	T	NTNG1	CCDS44180.1	r.?	-	-	intronic	39	0	0	69	17	24.63768116	0	0	NA	0	0	NA	3.56E-24	3.641171102	2	1	0.358828898	2	2	0.641171102	unphased	1.524241102	1.121731444	1.358828898	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214007151	1	112067927	C	T	ADORA3	CCDS41369.1	r.?	-	-	intronic	35	0	0	66	19	28.78787879	0	0	NA	0	0	NA	2.64E-28	3.641171102	2	1	0.358828898	2	2	0.641171102	unphased	1.780998293	0.890499146	2	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214007405	1	114725176	C	T	-	-	-	-	-	-	37	0	0	75	28	37.33333333	0	0	NA	0	0	NA	9.34E-45	3.641171102	2	1	0.358828898	2	2	0.641171102	unphased	2.309673575	1.154836788	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214007785	1	119371292	C	T	-	-	-	-	-	-	37	0	0	85	29	34.11764706	0	0	NA	0	0	NA	6.36E-45	3.641171102	2	1	0.358828898	2	2	0.641171102	unphased	2.110731103	1.055365552	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214010252	1	142934909	C	T	-	-	-	-	-	-	10	0	0	30	4	13.33333333	0	0	NA	0	0	NA	1.54E-05	3.641171102	2	1	0.358828898	2	2	0.641171102	unphased	0.82488342	0.82488342	1	0.00625	0.99375	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214014329	1	151844195	A	T	THEM4	CCDS1006.1	r.?	-	-	downstream	45	0	0	74	38	51.35135135	0	0	NA	0	0	NA	5.19E-67	4	3	1	1	NA	NA	NA	unphased	3.361179361	1.12039312	3	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214014399	1	152619375	A	T	-	-	-	-	-	-	32	0	0	111	54	48.64864865	0	0	NA	0	0	NA	7.90E-93	4	3	1	1	NA	NA	NA	unphased	3.184275184	1.061425061	3	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214014411	1	152892864	C	T	-	-	-	-	-	-	25	0	0	81	12	14.81481481	0	0	NA	0	0	NA	1.26E-14	4	3	1	1	NA	NA	NA	unphased	0.96969697	0.96969697	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214014797	1	156319670	C	T	C1orf182	CCDS1141.1	r.?	-	-	downstream	24	0	0	77	7	9.090909091	0	0	NA	0	0	NA	1.38E-07	4	3	1	1	NA	NA	NA	unphased	0.595041322	0.595041322	1	0.0225	0.9775	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214014976	1	158559004	A	T	-	-	-	-	-	-	41	0	0	93	9	9.677419355	0	0	NA	0	0	NA	1.29E-09	4	3	1	1	NA	NA	NA	unphased	0.633431085	0.633431085	1	0.0125	0.9875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214015231	1	161023400	C	T	ARHGAP30	CCDS30918.1	r.?	-	-	intronic	24	0	0	76	11	14.47368421	0	0	NA	0	0	NA	2.08E-13	4	3	1	1	NA	NA	NA	unphased	0.947368421	0.947368421	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214015390	1	162574879	G	T	-	-	-	-	-	-	19	0	0	71	22	30.98591549	0	0	NA	0	0	NA	2.34E-33	4	3	1	1	NA	NA	NA	unphased	2.028169014	1.014084507	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214015559	1	164506622	C	T	-	-	-	-	-	-	20	0	0	70	9	12.85714286	0	0	NA	0	0	NA	9.65E-11	4	3	1	1	NA	NA	NA	unphased	0.841558442	0.841558442	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214016098	1	170605900	C	T	-	-	-	-	-	-	41	0	0	89	30	33.70786517	0	0	NA	0	0	NA	3.14E-46	4	3	1	1	NA	NA	NA	unphased	2.206332993	1.103166496	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214016401	1	174413146	C	T	RABGAP1L	CCDS1314.1	r.?	-	-	intronic	31	0	0	79	36	45.56962025	0	0	NA	0	0	NA	4.70E-61	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	2.753326086	1.102845043	2.496566588	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214016534	1	176066936	C	T	RFWD2	CCDS30944.1	r.?	-	-	intronic	21	0	0	51	16	31.37254902	0	0	NA	0	0	NA	9.28E-25	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	1.895536042	0.947768021	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214016578	1	176635339	C	T	PAPPA2	CCDS41438.1	r.?	-	-	intronic	28	0	0	82	6	7.317073171	0	0	NA	0	0	NA	3.95E-06	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	0.442099107	0.89031183	0.496566588	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214016627	1	177646550	G	T	-	-	-	-	-	-	8	0	0	73	14	19.17808219	0	0	NA	0	0	NA	1.71E-18	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	1.158743779	1.158743779	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214017117	1	183212589	C	T	LAMC2	CCDS1352.1	r.3701c>u	c.?	p.?	3'UTR variant	24	0	0	61	13	21.31147541	0	0	NA	0	0	NA	6.41E-18	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	1.287643848	1.287643848	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214017279	1	185320174	C	T	-	-	-	-	-	-	31	0	0	72	31	43.05555556	0	0	NA	0	0	NA	8.50E-52	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	2.601425766	1.042001354	2.496566588	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214017291	1	185481560	C	T	-	-	-	-	-	-	35	0	0	70	13	18.57142857	0	0	NA	0	0	NA	4.44E-17	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	1.122089639	1.122089639	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214017302	1	185628446	G	T	-	-	-	-	-	-	20	0	0	71	11	15.49295775	0	0	NA	0	0	NA	9.49E-14	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	0.936087781	0.936087781	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214017453	1	187416233	G	T	-	-	-	-	-	-	25	0	0	74	37	50	0	0	NA	0	0	NA	1.06E-64	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	3.021010567	1.210066089	2.496566588	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214017600	1	188842784	A	T	-	-	-	-	-	-	26	0	0	57	11	19.29824561	0	0	NA	0	0	NA	7.29E-15	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	1.166004078	1.166004078	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214018085	1	196155414	A	T	-	-	-	-	-	-	33	0	0	74	28	37.83783784	0	0	NA	0	0	NA	5.88E-45	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	2.286170158	0.915725689	2.496566588	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214018300	1	198350690	C	T	-	-	-	-	-	-	35	0	0	63	8	12.6984127	0	0	NA	0	0	NA	1.18E-09	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	0.767240779	0.767240779	1	0.005	0.995	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214018812	1	203856569	G	T	-	-	-	-	-	-	35	0	0	82	15	18.29268293	0	0	NA	0	0	NA	2.22E-19	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	1.105247768	1.105247768	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214019409	1	211115893	A	T	KCNH1	CCDS31015.1	r.?	-	-	intronic	36	0	0	91	41	45.05494505	0	0	NA	0	0	NA	4.73E-69	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	2.722229302	1.090389223	2.496566588	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214019810	1	214960949	A	T	-	-	-	-	-	-	31	0	0	81	33	40.74074074	0	0	NA	0	0	NA	4.96E-54	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	2.461564165	0.985979776	2.496566588	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214019816	1	215024283	A	T	-	-	-	-	-	-	49	0	0	69	13	18.84057971	0	0	NA	0	0	NA	3.64E-17	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	1.138351808	1.138351808	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214019865	1	215711831	A	T	-	-	-	-	-	-	29	0	0	65	5	7.692307692	0	0	NA	0	0	NA	2.01E-05	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	0.464770856	0.935968847	0.496566588	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214019888	1	216164936	A	T	USH2A	CCDS31025.1	r.?	-	-	intronic	33	0	0	73	22	30.1369863	0	0	NA	0	0	NA	4.79E-33	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	1.820883081	0.910441541	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214019983	1	217614409	A	T	GPATCH2	CCDS1518.1	r.?	-	-	intronic	34	0	0	59	7	11.86440678	0	0	NA	0	0	NA	2.12E-08	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	0.716849965	0.716849965	1	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214020039	1	218349348	C	T	-	-	-	-	-	-	31	0	0	83	13	15.6626506	0	0	NA	0	0	NA	4.66E-16	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	0.946340659	0.946340659	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214020075	1	218807755	C	T	-	-	-	-	-	-	37	0	0	51	24	47.05882353	0	0	NA	0	0	NA	1.20E-41	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	2.843304063	1.138885731	2.496566588	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214020838	1	226658576	G	T	-	-	-	-	-	-	18	0	0	70	11	15.71428571	0	0	NA	0	0	NA	8.06E-14	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	0.949460464	0.949460464	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214021281	1	231813966	A	T	DISC1	CCDS31056.1	r.?	-	-	intronic	27	0	0	57	24	42.10526316	0	0	NA	0	0	NA	3.83E-40	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	2.544008898	1.019003022	2.496566588	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214021577	1	235102053	C	T	-	-	-	-	-	-	26	0	0	78	37	47.43589744	0	0	NA	0	0	NA	1.47E-63	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	2.866086948	1.148011418	2.496566588	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214021738	1	236425008	C	T	ERO1LB	CCDS31064.1	r.?	-	-	intronic	46	0	0	78	30	38.46153846	0	0	NA	0	0	NA	2.54E-48	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	2.323854282	0.930820068	2.496566588	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214021758	1	236566374	G	T	EDARADD	CCDS31065.1	r.?	-	-	intronic	25	0	0	76	31	40.78947368	0	0	NA	0	0	NA	7.17E-51	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	2.46450862	0.987159178	2.496566588	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214021875	1	237544835	C	T	RYR2	ENST00000366574	r.?	-	-	intronic	25	0	0	67	24	35.82089552	0	0	NA	0	0	NA	4.72E-38	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	2.164306078	1.082153039	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214022028	1	239297936	A	T	-	-	-	-	-	-	22	0	0	65	10	15.38461538	0	0	NA	0	0	NA	1.36E-12	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	0.929541713	0.929541713	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214022048	1	239698518	C	T	-	-	-	-	-	-	33	0	0	60	7	11.66666667	0	0	NA	0	0	NA	2.39E-08	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	0.704902466	0.704902466	1	0.00375	0.99625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214022154	1	240486088	C	T	FMN2	CCDS31069.2	r.?	-	-	intronic	29	0	0	59	23	38.98305085	0	0	NA	0	0	NA	1.45E-37	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	2.355364171	0.943441357	2.496566588	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214022170	1	240738512	A	T	GREM2	CCDS31070.1	r.?	-	-	intronic	18	0	0	72	24	33.33333333	0	0	NA	0	0	NA	3.76E-37	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	2.014007044	1.007003522	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214022190	1	240959211	G	T	RGS7	CCDS31071.1	r.?	-	-	intronic	25	0	0	76	35	46.05263158	0	0	NA	0	0	NA	1.30E-59	3.496566588	2	1	0.503433412	3	1	0.496566588	unphased	2.782509732	1.114534556	2.496566588	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214023103	10	195217	A	T	ZMYND11	CCDS7052.1	r.?	-	-	intronic	20	0	0	213	8	3.755868545	0	0	NA	0	0	NA	1.45E-05	17.72953575	16	1	0.270464248	16	2	0.729535752	unphased	0.761501983	1.043817223	0.729535752	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214023558	10	1194509	C	T	-	-	-	-	-	-	21	0	0	204	9	4.411764706	0	0	NA	0	0	NA	1.15E-06	17.72953575	16	1	0.270464248	16	2	0.729535752	unphased	0.894484866	0.894484866	1	0.0025	0.99625	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214023648	10	1315387	G	T	ADARB2	CCDS7058.1	r.?	-	-	intronic	13	1	7.692307692	225	10	4.444444444	0	0	NA	0	0	NA	2.75E-07	17.72953575	16	1	0.270464248	16	2	0.729535752	unphased	0.90111068	0.90111068	1	0.00125	0.99875	0	2	0.063085307	1	1	NA	NA	NA	NA
1352322	PD9768b	1214023850	10	1686448	C	T	ADARB2	CCDS7058.1	r.?	-	-	intronic	13	0	0	164	11	6.707317073	0	0	NA	0	0	NA	9.94E-10	17.72953575	16	1	0.270464248	16	2	0.729535752	unphased	1.359907886	1.359907886	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214024050	10	2190310	C	T	-	-	-	-	-	-	28	0	0	154	9	5.844155844	0	0	NA	0	0	NA	1.08E-07	17.72953575	16	1	0.270464248	16	2	0.729535752	unphased	1.18490203	1.18490203	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214024267	10	2744960	G	T	-	-	-	-	-	-	32	0	0	166	12	7.228915663	0	0	NA	0	0	NA	7.30E-11	10.18708562	9	1	0.812914377	9	2	0.187085623	unphased	0.92042459	0.92042459	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214024923	10	4639194	C	T	-	-	-	-	-	-	26	0	0	216	14	6.481481481	0	0	NA	0	0	NA	8.53E-12	15	14	1	1	NA	NA	NA	unphased	1.137205387	1.137205387	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214025302	10	6842270	C	T	-	-	-	-	-	-	9	0	0	63	46	73.01587302	0	0	NA	0	0	NA	1.32E-91	5.31519888	4	1	0.68480112	4	2	0.31519888	unphased	5.739524723	1.434881181	4	0	0.88375	0.11625	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214025494	10	7940461	A	T	TAF3	CCDS41487.1	r.?	-	-	intronic	17	0	0	102	63	61.76470588	0	0	NA	0	0	NA	2.13E-117	5.31519888	4	1	0.68480112	4	2	0.31519888	unphased	4.855109468	1.213777367	4	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214025820	10	9970014	G	T	-	-	-	-	-	-	38	0	0	99	24	24.24242424	0	0	NA	0	0	NA	2.52E-33	5.31519888	4	1	0.68480112	4	2	0.31519888	unphased	1.905612952	0.952806476	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214025892	10	10210403	C	T	-	-	-	-	-	-	39	0	0	171	30	17.54385965	0	0	NA	0	0	NA	1.16E-36	10	9	1	1	NA	NA	NA	unphased	2.200956938	1.100478469	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214026064	10	11687722	C	T	-	-	-	-	-	-	16	0	0	78	11	14.1025641	0	0	NA	0	0	NA	2.79E-13	5.264024235	4	1	0.735975765	4	2	0.264024235	unphased	1.101336751	1.101336751	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214026234	10	12342965	G	T	-	-	-	-	-	-	32	0	0	96	9	9.375	0	0	NA	0	0	NA	1.71E-09	5.264024235	4	1	0.735975765	4	2	0.264024235	unphased	0.732138636	0.732138636	1	0.00375	0.99625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214026501	10	14347460	G	T	FRMD4A	CCDS7101.1	r.?	-	-	intronic	43	0	0	78	40	51.28205128	0	0	NA	0	0	NA	2.00E-70	5.264024235	4	1	0.735975765	4	2	0.264024235	unphased	4.004860913	1.001215228	4	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214026525	10	14497280	C	T	-	-	-	-	-	-	15	0	0	65	19	29.23076923	0	0	NA	0	0	NA	1.89E-28	4.370996424	3	1	0.629003576	4	1	0.370996424	unphased	2.021731822	1.010865911	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214026732	10	15681575	C	T	ITGA8	CCDS31155.1	r.?	-	-	intronic	26	0	0	66	6	9.090909091	0	0	NA	0	0	NA	1.10E-06	4.370996424	3	1	0.629003576	4	1	0.370996424	unphased	0.62876827	0.62876827	1	0.01375	0.98625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214026872	10	16775378	G	T	RSU1	CCDS7112.1	r.?	-	-	intronic	29	0	0	85	12	14.11764706	0	0	NA	0	0	NA	2.29E-14	4.370996424	3	1	0.629003576	4	1	0.370996424	unphased	0.976440137	0.976440137	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214026874	10	16777253	G	T	RSU1	CCDS7112.1	r.?	-	-	intronic	32	0	0	107	13	12.14953271	107	0	0	212	46	21.69811321	1.43E-14	4.370996424	3	1	0.629003576	4	1	0.370996424	unphased	0.840316473	0.840316473	1	0.00125	0.99875	0	2	1	6.02E-60	1	YES	1_1	somatic	custom.pulldown.HiSeq
1352322	PD9768b	1214027096	10	18960391	C	T	ARL5B	CCDS7131.1	r.?	-	-	intronic	23	0	0	110	10	9.090909091	0	0	NA	0	0	NA	2.91E-10	5	4	1	1	NA	NA	NA	unphased	0.685950413	0.685950413	1	0.00625	0.99375	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214027143	10	19389410	G	T	ENSG00000234778	ENST00000455529	r.?	-	-	intronic	41	0	0	84	5	5.952380952	0	0	NA	0	0	NA	6.95E-05	2.686348135	1	1	0.313651865	2	1	0.686348135	unphased	0.311416826	0.453730127	0.686348135	0.07125	0.92875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214027475	10	23416901	A	T	-	-	-	-	-	-	27	0	0	65	8	12.30769231	0	0	NA	0	0	NA	1.53E-09	3.282348422	2	1	0.717651578	2	2	0.282348422	unphased	0.717268058	0.717268058	1	0.00625	0.99375	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214027516	10	24063127	C	T	KIAA1217	CCDS41496.1	r.?	-	-	intronic	23	0	0	67	26	38.80597015	0	0	NA	0	0	NA	3.31E-42	3.282348422	2	1	0.717651578	2	2	0.282348422	unphased	2.26153548	1.13076774	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214027700	10	25909444	A	T	-	-	-	-	-	-	28	0	0	73	12	16.43835616	0	0	NA	0	0	NA	3.39E-15	3.282348422	2	1	0.717651578	2	2	0.282348422	unphased	0.957995008	0.957995008	1	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214027756	10	26600576	C	T	-	-	-	-	-	-	27	0	0	55	15	27.27272727	0	0	NA	0	0	NA	3.01E-22	3.282348422	2	1	0.717651578	2	2	0.282348422	unphased	1.589400809	0.925333653	1.717651578	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214027983	10	28449522	C	T	MPP7	CCDS7158.1	r.?	-	-	intronic	28	0	0	61	14	22.95081967	0	0	NA	0	0	NA	1.10E-19	3.282348422	2	1	0.717651578	2	2	0.282348422	unphased	1.33752855	1.33752855	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214028067	10	29253352	C	T	-	-	-	-	-	-	31	0	0	59	8	13.55932203	0	0	NA	0	0	NA	6.90E-10	3.282348422	2	1	0.717651578	2	2	0.282348422	unphased	0.790210572	0.790210572	1	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214031635	10	51552306	C	T	MSMB	CCDS7235.1	r.?	-	-	intronic	17	0	0	43	11	25.58139535	0	0	NA	0	0	NA	2.42E-16	2.384744114	1	1	0.615255886	2	1	0.384744114	unphased	1.261213611	1.261213611	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214031721	10	53419233	G	T	PRKG1	CCDS7244.1	r.?	-	-	intronic	30	0	0	60	19	31.66666667	0	0	NA	0	0	NA	3.21E-29	2.384744114	1	1	0.615255886	2	1	0.384744114	unphased	1.561229576	1.127449873	1.384744114	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214031749	10	53914506	C	T	PRKG1	CCDS7244.1	r.?	-	-	intronic	30	0	0	52	8	15.38461538	0	0	NA	0	0	NA	2.42E-10	2.384744114	1	1	0.615255886	2	1	0.384744114	unphased	0.758492102	0.758492102	1	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214031816	10	54927303	C	T	-	-	-	-	-	-	38	0	0	66	19	28.78787879	0	0	NA	0	0	NA	2.64E-28	2.384744114	1	1	0.615255886	2	1	0.384744114	unphased	1.419299614	1.419299614	1	0	0.99375	0.00625	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214031926	10	56582509	C	T	PCDH15	ENST00000373957	r.?	-	-	intronic	33	0	0	67	17	25.37313433	0	0	NA	0	0	NA	2.03E-24	2	1	1	1	NA	NA	NA	unphased	1.153324288	1.153324288	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214031947	10	56866234	C	T	PCDH15	ENST00000373957	r.?	-	-	intronic	25	0	0	54	13	24.07407407	0	0	NA	0	0	NA	1.12E-18	2	1	1	1	NA	NA	NA	unphased	1.094276094	1.094276094	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214031968	10	57178915	C	T	PCDH15	ENST00000373957	r.?	-	-	intronic	38	0	0	56	6	10.71428571	0	0	NA	0	0	NA	4.09E-07	2	1	1	1	NA	NA	NA	unphased	0.487012987	0.487012987	1	0.0675	0.9325	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214031974	10	57243580	A	T	PCDH15	ENST00000373957	r.?	-	-	intronic	29	0	0	71	16	22.53521127	0	0	NA	0	0	NA	3.77E-22	2	1	1	1	NA	NA	NA	unphased	1.024327785	1.024327785	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214032133	10	59376467	C	T	-	-	-	-	-	-	39	0	0	71	16	22.53521127	0	0	NA	0	0	NA	3.77E-22	2	1	1	1	NA	NA	NA	unphased	1.024327785	1.024327785	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214032254	10	61027220	C	T	FAM13C	CCDS44406.1	r.?	-	-	intronic	26	0	0	69	26	37.68115942	0	0	NA	0	0	NA	8.50E-42	2	1	1	1	NA	NA	NA	unphased	1.712779974	1.712779974	1	0	0.9575	0.0425	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214032542	10	64936876	A	T	JMJD1C	CCDS41532.1	r.?	-	-	intronic	31	0	0	55	10	18.18181818	0	0	NA	0	0	NA	2.33E-13	2	1	1	1	NA	NA	NA	unphased	0.826446281	0.826446281	1	0.005	0.995	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214032554	10	65065778	C	T	JMJD1C	CCDS41532.1	r.?	-	-	intronic	14	0	0	59	12	20.33898305	0	0	NA	0	0	NA	2.20E-16	2	1	1	1	NA	NA	NA	unphased	0.92449923	0.92449923	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214032681	10	66676173	A	T	-	-	-	-	-	-	23	0	0	60	22	36.66666667	0	0	NA	0	0	NA	2.81E-35	2	1	1	1	NA	NA	NA	unphased	1.666666667	1.666666667	1	0	0.98375	0.01625	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214032795	10	68209836	C	T	CTNNA3	CCDS7269.1	r.?	-	-	intronic	36	0	0	73	7	9.589041096	0	0	NA	0	0	NA	9.54E-08	2	1	1	1	NA	NA	NA	unphased	0.435865504	0.435865504	1	0.2425	0.7575	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214032842	10	68824964	G	T	LRRTM3	CCDS7270.1	r.?	-	-	intronic	32	0	0	60	5	8.333333333	0	0	NA	0	0	NA	1.36E-05	1.190955641	1	0	0.809044359	1	1	0.190955641	unphased	0.311367516	1.630575109	0.190955641	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214032844	10	68939967	C	T	CTNNA3	CCDS7269.1	r.?	-	-	intronic	40	0	0	61	18	29.50819672	0	0	NA	0	0	NA	4.08E-27	1.190955641	1	0	0.809044359	1	1	0.190955641	unphased	1.102547268	1.102547268	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214033303	10	74570544	C	T	CCDC109A	CCDS7317.1	r.?	-	-	intronic	17	0	0	80	7	8.75	0	0	NA	0	0	NA	1.80E-07	5	3	2	1	NA	NA	NA	unphased	0.660227273	0.660227273	1	0.01125	0.98875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214033326	10	74890215	C	T	ECD	CCDS7321.1	r.?	-	-	downstream	14	0	0	67	7	10.44776119	0	0	NA	2	2	100	5.23E-08	5	3	2	1	NA	NA	NA	unphased	0.788331072	0.788331072	1	0.00625	0.99375	0	2	1	2.50E-05	1	NA	NA	NA	NA
1352322	PD9768b	1214033472	10	76622736	C	T	MYST4	CCDS7345.1	r.?	-	-	intronic	32	0	0	68	18	26.47058824	0	0	NA	0	0	NA	3.83E-26	4	2	2	1	NA	NA	NA	unphased	1.732620321	0.86631016	2	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214033815	10	81943613	C	T	ANXA11	CCDS7364.1	r.?	-	-	intronic	22	0	0	54	17	31.48148148	0	0	NA	2	0	0	3.02E-26	4	2	2	1	NA	NA	NA	unphased	2.060606061	1.03030303	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214033862	10	82496273	C	T	-	-	-	-	-	-	30	0	0	69	20	28.98550725	0	0	NA	0	0	NA	8.73E-30	4	2	2	1	NA	NA	NA	unphased	1.897233202	0.948616601	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214033912	10	83807006	C	T	NRG3	CCDS31233.1	r.?	-	-	intronic	33	0	0	71	8	11.26760563	0	0	NA	0	0	NA	3.14E-09	4	2	2	1	NA	NA	NA	unphased	0.737516005	0.737516005	1	0.00375	0.99625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214034156	10	88305254	A	T	-	-	-	-	-	-	31	0	0	68	22	32.35294118	0	0	NA	0	0	NA	7.67E-34	4	2	2	1	NA	NA	NA	unphased	2.117647059	1.058823529	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214034169	10	88530144	G	T	BMPR1A	CCDS7378.1	r.?	-	-	intronic	20	0	0	58	16	27.5862069	0	0	NA	0	0	NA	1.00E-23	4	2	2	1	NA	NA	NA	unphased	1.805642633	0.902821317	2	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214034448	10	93503918	C	T	-	-	-	-	-	-	32	0	0	73	24	32.87671233	0	0	NA	0	0	NA	5.58E-37	4	2	2	1	NA	NA	NA	unphased	2.151930262	1.075965131	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214034467	10	93879270	G	T	CPEB3	CCDS31246.1	r.?	-	-	intronic	39	0	0	74	20	27.02702703	0	0	NA	0	0	NA	4.34E-29	4	2	2	1	NA	NA	NA	unphased	1.769041769	0.884520885	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214034581	10	94921994	C	T	-	-	-	-	-	-	32	0	0	69	6	8.695652174	0	0	NA	0	0	NA	1.43E-06	4	2	2	1	NA	NA	NA	unphased	0.56916996	0.56916996	1	0.01875	0.98125	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214034602	10	95054657	C	T	-	-	-	-	-	-	15	0	0	77	7	9.090909091	0	0	NA	0	0	NA	1.38E-07	4	2	2	1	NA	NA	NA	unphased	0.595041322	0.595041322	1	0.01625	0.98375	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214034849	10	98962142	A	T	-	-	-	-	-	-	14	0	0	75	11	14.66666667	0	0	NA	0	0	NA	1.78E-13	4	2	2	1	NA	NA	NA	unphased	0.96	0.96	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214034920	10	100202883	C	T	HPS1	CCDS7475.1	r.349g>a	c.115G>A	p.E39K	missense	21	0	0	65	7	10.76923077	260	1	0.384615385	218	14	6.422018349	4.22E-08	4	2	2	1	NA	NA	NA	unphased	0.704895105	0.704895105	1	0.00375	0.99625	0	2	1	9.66E-12	0.728355451	YES	1_1	somatic	custom.pulldown.HiSeq
1352322	PD9768b	1214034954	10	100528537	G	T	HPSE2	CCDS7477.1	r.?	-	-	intronic	27	0	0	62	15	24.19354839	0	0	NA	0	0	NA	2.28E-21	4	2	2	1	NA	NA	NA	unphased	1.583577713	0.791788856	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214034996	10	101247567	A	T	-	-	-	-	-	-	42	0	0	85	26	30.58823529	0	0	NA	0	0	NA	5.65E-39	4	2	2	1	NA	NA	NA	unphased	2.002139037	1.001069519	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214035258	10	104673266	C	T	CNNM2	CCDS44474.1	r.?	-	-	upstream	40	0	0	67	19	28.35820896	0	0	NA	0	0	NA	3.67E-28	4	2	2	1	NA	NA	NA	unphased	1.856173677	0.928086839	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214035472	10	108036496	G	T	-	-	-	-	-	-	39	0	0	71	22	30.98591549	0	0	NA	0	0	NA	2.34E-33	4	2	2	1	NA	NA	NA	unphased	2.028169014	1.014084507	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214035839	10	113403472	C	T	-	-	-	-	-	-	22	0	0	64	5	7.8125	0	0	NA	0	0	NA	1.86E-05	4	2	2	1	NA	NA	NA	unphased	0.511363636	0.511363636	1	0.025	0.975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214036195	10	117353241	C	T	ATRNL1	CCDS7592.1	r.?	-	-	intronic	26	0	0	64	13	20.3125	0	0	NA	0	0	NA	1.26E-17	4	2	2	1	NA	NA	NA	unphased	1.329545455	1.329545455	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214036198	10	117373318	G	T	ATRNL1	CCDS7592.1	r.?	-	-	intronic	31	0	0	87	19	21.83908046	0	0	NA	0	0	NA	9.64E-26	4	2	2	1	NA	NA	NA	unphased	1.429467085	1.429467085	1	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214036598	10	122118844	C	T	-	-	-	-	-	-	14	0	0	82	19	23.17073171	0	0	NA	0	0	NA	2.79E-26	4	2	2	1	NA	NA	NA	unphased	1.516629712	0.758314856	2	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214036680	10	123196052	C	T	-	-	-	-	-	-	40	0	0	69	20	28.98550725	0	0	NA	0	0	NA	8.73E-30	4	2	2	1	NA	NA	NA	unphased	1.897233202	0.948616601	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214036769	10	124396846	C	T	DMBT1	CCDS44490.1	r.?	-	-	intronic	25	0	0	59	11	18.6440678	0	0	NA	0	0	NA	1.10E-14	4	2	2	1	NA	NA	NA	unphased	1.220338983	1.220338983	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214036900	10	126551709	G	T	-	-	-	-	-	-	23	0	0	87	24	27.5862069	0	0	NA	0	0	NA	7.54E-35	4	2	2	1	NA	NA	NA	unphased	1.805642633	0.902821317	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214037158	10	127969863	C	T	ADAM12	CCDS7653.1	r.?	-	-	intronic	32	0	0	79	17	21.51898734	0	0	NA	0	0	NA	4.55E-23	4	2	2	1	NA	NA	NA	unphased	1.408515535	1.408515535	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214037364	10	131246433	A	T	-	-	-	-	-	-	15	0	0	72	10	13.88888889	0	0	NA	0	0	NA	3.95E-12	4	2	2	1	NA	NA	NA	unphased	0.909090909	0.909090909	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214037393	10	132065916	C	T	-	-	-	-	-	-	30	0	0	61	13	21.31147541	0	0	NA	0	0	NA	6.41E-18	4	2	2	1	NA	NA	NA	unphased	1.394932936	1.394932936	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214038591	11	10822391	C	T	EIF4G2	CCDS31428.1	r.1957-9g>a	c.1540-9G>A	p.?	splice region	31	0	0	64	13	20.3125	174	0	0	152	16	10.52631579	1.26E-17	3	2	1	1	NA	NA	NA	unphased	1.126420455	1.126420455	1	0	1	0	2	1	1.38E-16	1	YES	1_1	somatic	custom.pulldown.HiSeq
1352322	PD9768b	1214039114	11	19128794	C	T	-	-	-	-	-	-	33	0	0	73	22	30.1369863	0	0	NA	0	0	NA	4.79E-33	3	2	1	1	NA	NA	NA	unphased	1.671232877	0.835616438	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214039153	11	19789228	C	T	NAV2	CCDS7851.2	r.?	-	-	intronic	29	0	0	58	11	18.96551724	0	0	NA	0	0	NA	8.96E-15	3	2	1	1	NA	NA	NA	unphased	1.051724138	1.051724138	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214039560	11	25426586	A	T	-	-	-	-	-	-	39	0	0	56	6	10.71428571	0	0	NA	0	0	NA	4.09E-07	3	2	1	1	NA	NA	NA	unphased	0.594155844	0.594155844	1	0.01375	0.98625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214039590	11	25776491	C	T	-	-	-	-	-	-	18	0	0	58	10	17.24137931	0	0	NA	0	0	NA	4.10E-13	3	2	1	1	NA	NA	NA	unphased	0.956112853	0.956112853	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214039709	11	27503533	C	T	-	-	-	-	-	-	27	0	0	83	16	19.27710843	0	0	NA	0	0	NA	5.75E-21	3	2	1	1	NA	NA	NA	unphased	1.069003286	1.069003286	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214039887	11	31006444	C	T	ENSG00000226746	ENST00000399333	r.?	-	-	intronic	31	0	0	55	13	23.63636364	0	0	NA	0	0	NA	1.46E-18	3	2	1	1	NA	NA	NA	unphased	1.310743802	1.310743802	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214040128	11	34160034	C	T	NAT10	CCDS7889.1	r.?	-	-	intronic	11	0	0	84	11	13.0952381	0	0	NA	0	0	NA	6.49E-13	2.86642458	1	1	0.13357542	2	1	0.86642458	unphased	0.708698457	0.817957469	0.86642458	0.00125	0.9975	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214040281	11	36513411	C	T	TRAF6	CCDS7901.1	r.?	-	-	intronic	24	0	0	75	13	17.33333333	0	0	NA	0	0	NA	1.16E-16	2.86642458	1	1	0.13357542	2	1	0.86642458	unphased	0.938059048	0.938059048	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214040508	11	40056669	G	T	-	-	-	-	-	-	24	0	0	65	11	16.92307692	0	0	NA	0	0	NA	3.41E-14	2.86642458	1	1	0.13357542	2	1	0.86642458	unphased	0.915856467	1.057052729	0.86642458	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214040568	11	41044183	A	T	-	-	-	-	-	-	40	0	0	53	8	15.09433962	0	0	NA	0	0	NA	2.83E-10	2.86642458	1	1	0.13357542	2	1	0.86642458	unphased	0.816887415	0.942825762	0.86642458	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214040635	11	42112990	C	T	-	-	-	-	-	-	40	0	0	67	27	40.29850746	0	0	NA	0	0	NA	2.52E-44	2.86642458	1	1	0.13357542	2	1	0.86642458	unphased	2.180906513	1.168494316	1.86642458	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214040658	11	42351114	C	T	-	-	-	-	-	-	32	0	0	65	9	13.84615385	0	0	NA	0	0	NA	4.85E-11	2.86642458	1	1	0.13357542	2	1	0.86642458	unphased	0.74933711	0.864861324	0.86642458	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214040805	11	44602424	C	T	CD82	CCDS7909.1	r.?	-	-	intronic	24	0	0	47	15	31.91489362	0	0	NA	0	0	NA	1.97E-23	2.86642458	1	1	0.13357542	2	1	0.86642458	unphased	1.727195466	0.9254033	1.86642458	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214040851	11	45321267	G	T	-	-	-	-	-	-	23	0	0	66	24	36.36363636	0	0	NA	0	0	NA	3.04E-38	2.86642458	1	1	0.13357542	2	1	0.86642458	unphased	1.967956046	1.054398911	1.86642458	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214040977	11	47509001	C	T	CELF1	CCDS7939.1	r.?	-	-	intronic	31	0	0	87	16	18.3908046	0	0	NA	0	0	NA	1.29E-20	2.86642458	1	1	0.13357542	2	1	0.86642458	unphased	0.995288115	0.995288115	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214041120	11	48465859	A	T	-	-	-	-	-	-	32	0	0	67	10	14.92537313	0	0	NA	0	0	NA	1.87E-12	2.86642458	1	1	0.13357542	2	1	0.86642458	unphased	0.807743153	0.932271742	0.86642458	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214041144	11	48758035	G	T	-	-	-	-	-	-	18	0	0	56	10	17.85714286	0	0	NA	0	0	NA	2.82E-13	2.86642458	1	1	0.13357542	2	1	0.86642458	unphased	0.966406987	0.966406987	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214041381	11	49084430	C	T	TRIM64C	ENST00000340070	r.?	-	-	upstream	33	0	0	45	18	40	0	0	NA	0	0	NA	5.76E-30	2.86642458	1	1	0.13357542	2	1	0.86642458	unphased	2.16475165	1.159838803	1.86642458	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214041410	11	49630708	C	T	ENSG00000205035	ENST00000357667	r.?	-	-	intronic	30	0	0	67	6	8.955223881	140	0	0	207	13	6.280193237	1.20E-06	2.86642458	1	1	0.13357542	2	1	0.86642458	unphased	0.484645892	0.559363045	0.86642458	0.01875	0.98125	0	2	1	6.95E-11	1	YES	1_1	somatic	custom.pulldown.HiSeq
1352322	PD9768b	1214041428	11	49746800	G	T	ENSG00000205035	ENST00000357667	r.?	-	-	intronic	23	0	0	72	6	8.333333333	0	0	NA	0	0	NA	1.84E-06	2.86642458	1	1	0.13357542	2	1	0.86642458	unphased	0.450989927	0.520518389	0.86642458	0.035	0.965	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214041487	11	50189201	G	T	-	-	-	-	-	-	16	0	0	60	22	36.66666667	0	0	NA	0	0	NA	2.81E-35	2.86642458	1	1	0.13357542	2	1	0.86642458	unphased	1.984355679	1.063185569	1.86642458	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214042065	11	55349020	C	T	-	-	-	-	-	-	23	0	0	81	30	37.03703704	0	0	NA	0	0	NA	1.02E-47	2.86642458	1	1	0.13357542	2	1	0.86642458	unphased	2.004399676	1.073924817	1.86642458	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214042204	11	57437428	C	T	ZDHHC5	CCDS7965.1	r.?	-	-	intronic	19	0	0	65	13	20	0	0	NA	0	0	NA	1.57E-17	2.86642458	1	1	0.13357542	2	1	0.86642458	unphased	1.082375825	1.082375825	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214042882	11	64657291	G	T	ATG2A	CCDS31602.1	r.?	-	-	downstream	19	0	0	62	38	61.29032258	0	0	NA	0	0	NA	3.14E-71	3.115135856	3	0	0.884864144	3	1	0.115135856	unphased	3.469394117	1.156464706	3	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214043016	11	66591037	A	T	C11orf80	ENST00000360962	r.?	-	-	intronic	16	0	0	51	8	15.68627451	0	0	NA	0	0	NA	2.05E-10	3.115135856	3	0	0.884864144	3	1	0.115135856	unphased	0.887935749	0.887935749	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214043039	11	66902665	G	T	KDM2A	CCDS44657.1	r.?	-	-	intronic	11	0	0	70	41	58.57142857	0	0	NA	0	0	NA	1.60E-75	3.115135856	3	0	0.884864144	3	1	0.115135856	unphased	3.315488664	1.105162888	3	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214043217	11	68754539	C	T	-	-	-	-	-	-	24	0	0	59	30	50.84745763	0	0	NA	0	0	NA	4.78E-53	3.115135856	3	0	0.884864144	3	1	0.115135856	unphased	2.878266306	0.997712947	2.884864144	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214043474	11	71638249	C	T	RNF121	CCDS8203.1	r.?	-	-	upstream	9	0	0	60	31	51.66666667	0	0	NA	0	0	NA	4.63E-55	3.115135856	3	0	0.884864144	3	1	0.115135856	unphased	2.924638374	1.013787211	2.884864144	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214043702	11	74311709	G	T	POLD3	CCDS8233.1	r.?	-	-	intronic	18	0	0	55	10	18.18181818	0	0	NA	0	0	NA	2.33E-13	3.115135856	3	0	0.884864144	3	1	0.115135856	unphased	1.029198255	1.029198255	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214043895	11	77466190	C	T	RSF1	CCDS8253.1	r.?	-	-	intronic	31	0	0	63	10	15.87301587	0	0	NA	0	0	NA	9.81E-13	3.115135856	3	0	0.884864144	3	1	0.115135856	unphased	0.898506413	0.898506413	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214043925	11	77762102	C	T	-	-	-	-	-	-	26	0	0	61	32	52.45901639	0	0	NA	0	0	NA	4.41E-57	3.115135856	3	0	0.884864144	3	1	0.115135856	unphased	2.969490047	0.989830016	3	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214044183	11	82103722	C	T	AP002802.1	ENST00000500502	r.?	-	-	intronic	11	0	0	45	10	22.22222222	0	0	NA	0	0	NA	2.66E-14	3.115135856	3	0	0.884864144	3	1	0.115135856	unphased	1.257908978	1.257908978	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214044187	11	82158855	C	T	-	-	-	-	-	-	44	0	0	56	27	48.21428571	133	1	0.751879699	125	58	46.4	4.78E-47	3.115135856	3	0	0.884864144	3	1	0.115135856	unphased	2.729213229	0.946045669	2.884864144	0	1	0	2	1	5.48E-98	0.486583598	YES	1_1	somatic	custom.pulldown.HiSeq
1352322	PD9768b	1214044322	11	85043428	G	T	DLG2	CCDS44690.1	r.?	-	-	intronic	32	0	0	57	6	10.52631579	0	0	NA	0	0	NA	4.56E-07	2.61870717	2	0	0.38129283	3	0	0.61870717	unphased	0.54359597	0.878599759	0.61870717	0.00125	0.9975	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214044349	11	85679425	C	T	PICALM	CCDS8272.1	r.?	-	-	intronic	28	0	0	66	33	50	0	0	NA	0	0	NA	7.16E-58	2.61870717	2	0	0.38129283	3	0	0.61870717	unphased	2.582080858	0.98601359	2.61870717	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214044384	11	86349561	C	T	ME3	CCDS8277.1	r.?	-	-	intronic	38	0	0	73	21	28.76712329	0	0	NA	0	0	NA	4.03E-31	2.61870717	2	0	0.38129283	3	0	0.61870717	unphased	1.485580767	0.917757575	1.61870717	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214044488	11	87400479	C	T	-	-	-	-	-	-	37	0	0	73	35	47.94520548	0	0	NA	0	0	NA	2.00E-60	2.61870717	2	0	0.38129283	3	0	0.61870717	unphased	2.475967946	0.945492484	2.61870717	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214044651	11	90076564	G	T	-	-	-	-	-	-	31	0	0	78	13	16.66666667	0	0	NA	0	0	NA	1.99E-16	2.61870717	2	0	0.38129283	3	0	0.61870717	unphased	0.860693619	0.860693619	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214044713	11	91280537	C	T	-	-	-	-	-	-	29	0	0	55	8	14.54545455	0	0	NA	0	0	NA	3.86E-10	2.61870717	2	0	0.38129283	3	0	0.61870717	unphased	0.751150795	1.214065121	0.61870717	0.00125	0.99625	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214044867	11	93644065	G	T	-	-	-	-	-	-	31	0	0	70	5	7.142857143	0	0	NA	0	0	NA	2.89E-05	2.61870717	2	0	0.38129283	3	0	0.61870717	unphased	0.368868694	0.596192693	0.61870717	0.0125	0.98625	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214044890	11	93912230	C	T	PANX1	CCDS8296.1	r.?	-	-	intronic	32	0	0	71	8	11.26760563	0	0	NA	0	0	NA	3.14E-09	2.61870717	2	0	0.38129283	3	0	0.61870717	unphased	0.581877376	0.940472981	0.61870717	0.0025	0.99625	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214044906	11	94107213	A	T	GPR83	CCDS8297.1	r.?	-	-	downstream	33	0	0	69	16	23.1884058	0	0	NA	0	0	NA	2.27E-22	2.61870717	2	0	0.38129283	3	0	0.61870717	unphased	1.197486775	1.197486775	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214045001	11	95752740	C	T	MAML2	CCDS44714.1	r.?	-	-	intronic	24	0	0	69	36	52.17391304	0	0	NA	0	0	NA	6.56E-64	2.61870717	2	0	0.38129283	3	0	0.61870717	unphased	2.694345243	1.028883746	2.61870717	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214045235	11	99258917	C	T	-	-	-	-	-	-	22	0	0	58	24	41.37931034	0	0	NA	0	0	NA	6.49E-40	2.61870717	2	0	0.38129283	3	0	0.61870717	unphased	2.136894503	1.068447251	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214045239	11	99300310	A	T	-	-	-	-	-	-	45	0	0	66	36	54.54545455	0	0	NA	0	0	NA	6.94E-65	2.61870717	2	0	0.38129283	3	0	0.61870717	unphased	2.816815481	1.075651189	2.61870717	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214045279	11	99717565	A	T	CNTN5	ENST00000279463	r.?	-	-	intronic	29	0	0	62	33	53.22580645	0	0	NA	0	0	NA	4.14E-59	2.61870717	2	0	0.38129283	3	0	0.61870717	unphased	2.748666719	1.04962737	2.61870717	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214045712	11	105080815	C	T	-	-	-	-	-	-	34	0	0	71	13	18.30985915	0	0	NA	0	0	NA	5.42E-17	2.61870717	2	0	0.38129283	3	0	0.61870717	unphased	0.945550737	0.945550737	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214045768	11	106004407	C	T	-	-	-	-	-	-	33	0	0	64	12	18.75	0	0	NA	0	0	NA	6.30E-16	2.61870717	2	0	0.38129283	3	0	0.61870717	unphased	0.968280322	0.968280322	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214046122	11	110964411	C	T	-	-	-	-	-	-	43	0	0	68	31	45.58823529	0	0	NA	0	0	NA	8.53E-53	2.61870717	2	0	0.38129283	3	0	0.61870717	unphased	2.354250194	0.899012391	2.61870717	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214046229	11	112713691	C	T	-	-	-	-	-	-	39	0	0	79	13	16.4556962	0	0	NA	0	0	NA	2.37E-16	2.61870717	2	0	0.38129283	3	0	0.61870717	unphased	0.849798763	0.849798763	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214046540	11	117194963	G	T	CEP164	CCDS31683.1	r.?	-	-	upstream	29	0	0	48	5	10.41666667	0	0	NA	0	0	NA	4.47E-06	2.61870717	2	0	0.38129283	3	0	0.61870717	unphased	0.537933512	0.869447678	0.61870717	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214046836	11	120622649	C	T	GRIK4	CCDS8433.1	r.?	-	-	intronic	10	0	0	52	8	15.38461538	0	0	NA	0	0	NA	2.42E-10	2.61870717	2	0	0.38129283	3	0	0.61870717	unphased	0.794486418	0.794486418	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214047178	11	124680124	C	T	AP000866.1	ENST00000499143	r.?	-	-	intronic	25	0	0	53	13	24.52830189	0	0	NA	0	0	NA	8.53E-19	2.61870717	2	0	0.38129283	3	0	0.61870717	unphased	1.266681175	1.266681175	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214047422	11	128217980	G	T	-	-	-	-	-	-	34	0	0	63	19	30.15873016	0	0	NA	0	0	NA	9.48E-29	2.61870717	2	0	0.38129283	3	0	0.61870717	unphased	1.557445597	0.962154011	1.61870717	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214047670	11	131888449	C	T	OPCML	CCDS8491.1	r.?	-	-	intronic	27	0	0	55	10	18.18181818	0	0	NA	0	0	NA	2.33E-13	2.61870717	2	0	0.38129283	3	0	0.61870717	unphased	0.938938494	0.938938494	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214047703	11	132458298	C	T	ENSG00000183715	CCDS8492.1	r.?	-	-	intronic	46	0	0	55	27	49.09090909	0	0	NA	0	0	NA	2.49E-47	2.49427502	2	0	0.50572498	3	0	0.49427502	unphased	2.47404906	0.991891046	2.49427502	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214048029	12	454440	C	T	KDM5A	CCDS41736.1	r.?	-	-	intronic	35	0	0	151	21	13.90728477	0	0	NA	0	0	NA	6.69E-24	15	13	2	1	NA	NA	NA	unphased	2.440096328	0.813365443	3	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214048290	12	1008462	G	T	WNK1	CCDS8506.1	r.?	-	-	intronic	20	0	0	136	5	3.676470588	0	0	NA	0	0	NA	0.000653795	15	13	2	1	NA	NA	NA	unphased	0.645053476	0.645053476	1	0.0125	0.9875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214048372	12	1166703	A	T	ERC1	CCDS8508.1	r.?	-	-	intronic	12	0	0	231	19	8.225108225	0	0	NA	0	0	NA	2.17E-17	15	13	2	1	NA	NA	NA	unphased	1.443132625	1.443132625	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214049097	12	4054544	C	T	-	-	-	-	-	-	25	0	0	141	13	9.219858156	0	0	NA	0	0	NA	5.32E-13	9	7	2	1	NA	NA	NA	unphased	1.064474533	1.064474533	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214049339	12	5088532	A	T	-	-	-	-	-	-	33	0	0	252	13	5.158730159	0	0	NA	0	0	NA	7.80E-10	20.49391387	19	1	0.506086134	19	2	0.493913866	unphased	1.188538847	1.188538847	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214049456	12	5415127	G	T	-	-	-	-	-	-	21	0	0	128	15	11.71875	0	0	NA	0	0	NA	2.37E-16	15	13	2	1	NA	NA	NA	unphased	2.056107955	1.028053977	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214049457	12	5415128	A	T	-	-	-	-	-	-	22	0	0	128	10	7.8125	0	0	NA	0	0	NA	1.30E-09	15	13	2	1	NA	NA	NA	unphased	1.370738636	1.370738636	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214049559	12	5769685	C	T	ANO2	CCDS44807.1	r.?	-	-	intronic	28	0	0	210	10	4.761904762	0	0	NA	2	0	0	1.46E-07	15	13	2	1	NA	NA	NA	unphased	0.835497835	0.835497835	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214049663	12	6035422	G	T	ANO2	CCDS44807.1	r.?	-	-	intronic	17	0	0	147	23	15.6462585	0	0	NA	0	0	NA	2.92E-27	15	13	2	1	NA	NA	NA	unphased	2.745207174	0.915069058	3	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214049843	12	6502670	C	T	LTBR	CCDS8544.1	r.?	-	-	downstream	34	0	0	172	13	7.558139535	0	0	NA	0	0	NA	6.79E-12	15	13	2	1	NA	NA	NA	unphased	1.326109937	1.326109937	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214049992	12	7323724	C	T	-	-	-	-	-	-	37	0	0	99	12	12.12121212	0	0	NA	0	0	NA	1.51E-13	9	7	2	1	NA	NA	NA	unphased	1.399449036	1.399449036	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214050370	12	8862070	C	T	RIMKLB	CCDS41748.1	r.?	-	-	intronic	21	0	0	136	99	72.79411765	0	0	NA	0	0	NA	3.74E-195	10.44259323	9	1	0.557406766	9	2	0.442593234	unphased	9.454534781	1.050503865	9	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214050487	12	9240995	C	T	A2M	CCDS44827.1	r.?	-	-	intronic	36	0	0	121	8	6.611570248	0	0	NA	0	0	NA	2.13E-07	6.262547385	5	1	0.737452615	5	2	0.262547385	unphased	0.582347235	0.582347235	1	0.0275	0.9725	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214050812	12	10446566	C	T	-	-	-	-	-	-	32	0	0	110	9	8.181818182	0	0	NA	0	0	NA	5.76E-09	6.262547385	5	1	0.737452615	5	2	0.262547385	unphased	0.720654703	0.720654703	1	0.005	0.995	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214051215	12	11736886	C	T	-	-	-	-	-	-	37	0	0	238	19	7.983193277	0	0	NA	0	0	NA	3.78E-17	8.227310559	7	1	0.772689441	7	2	0.227310559	unphased	0.86001066	0.86001066	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214051753	12	12953373	C	T	-	-	-	-	-	-	39	0	0	119	9	7.56302521	0	0	NA	0	0	NA	1.15E-08	8.67563371	7	1	0.32436629	7	2	0.67563371	unphased	0.848653734	0.848653734	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214051823	12	13197050	C	T	KIAA1467	CCDS31750.1	r.?	-	-	upstream	16	0	0	97	15	15.46391753	0	0	NA	0	0	NA	3.21E-18	8.67563371	7	1	0.32436629	7	2	0.67563371	unphased	1.735219833	0.867609917	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214051872	12	13539082	G	T	-	-	-	-	-	-	27	0	0	123	15	12.19512195	0	0	NA	0	0	NA	1.29E-16	8.67563371	7	1	0.32436629	7	2	0.67563371	unphased	1.368425397	1.368425397	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214051903	12	13713152	C	T	GRIN2B	CCDS8662.1	r.?	-	-	downstream	32	0	0	161	23	14.28571429	0	0	NA	0	0	NA	2.61E-26	10.39661528	9	1	0.603384719	9	2	0.396615281	unphased	1.848867118	0.924433559	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214052343	12	15535203	A	T	PTPRO	CCDS8675.1	r.?	-	-	intronic	32	0	0	307	22	7.166123779	0	0	NA	0	0	NA	1.31E-18	10.39661528	9	1	0.603384719	9	2	0.396615281	unphased	0.927444743	0.927444743	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214052661	12	16712161	G	T	LMO3	CCDS8678.1	r.?	-	-	intronic	30	0	0	120	7	5.833333333	0	0	NA	0	0	NA	2.84E-06	7	5	2	1	NA	NA	NA	unphased	0.556818182	0.556818182	1	0.02625	0.97375	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214052676	12	16888929	C	T	-	-	-	-	-	-	30	0	0	107	12	11.21495327	0	0	NA	0	0	NA	3.90E-13	7	5	2	1	NA	NA	NA	unphased	1.070518267	1.070518267	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214052799	12	17426003	A	T	-	-	-	-	-	-	38	0	0	203	158	77.83251232	0	0	NA	0	0	NA	6.41356496179439e-319	11	10	1	1	NA	NA	NA	unphased	10.54276758	1.054276758	10	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214052909	12	17978205	C	T	-	-	-	-	-	-	35	0	0	197	24	12.18274112	0	0	NA	0	0	NA	1.13E-25	13.23055981	12	1	0.769440192	12	2	0.230559808	unphased	1.921950987	0.960975494	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214052958	12	18189123	A	T	-	-	-	-	-	-	26	0	0	200	15	7.5	0	0	NA	0	0	NA	1.87E-13	13.23055981	12	1	0.769440192	12	2	0.230559808	unphased	1.183201076	1.183201076	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214053886	12	20336989	A	T	-	-	-	-	-	-	13	0	0	46	13	28.26086957	0	0	NA	0	0	NA	1.07E-19	19.33517885	18	1	0.664821146	18	2	0.335178854	unphased	6.183657265	1.030609544	6	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214054101	12	20836337	G	T	PDE3A	CCDS31754.1	r.?	-	-	downstream	29	0	0	284	19	6.690140845	0	0	NA	0	0	NA	9.86E-16	19.33517885	18	1	0.664821146	18	2	0.335178854	unphased	1.463845192	1.463845192	1	0	0.995	0.005	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214054724	12	21667641	G	T	GOLT1B	CCDS8689.1	r.?	-	-	intronic	31	0	0	400	12	3	0	0	NA	0	0	NA	1.22E-06	19.33517885	18	1	0.664821146	18	2	0.335178854	unphased	0.656419002	0.656419002	1	0.01125	0.98875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214054748	12	21695001	A	T	GYS2	CCDS8690.1	r.?	-	-	intronic	22	0	0	315	8	2.53968254	0	0	NA	0	0	NA	0.000221508	19.33517885	18	1	0.664821146	18	2	0.335178854	unphased	0.555698626	0.555698626	1	0.035	0.965	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214055111	12	22455159	A	T	ST8SIA1	CCDS8697.1	r.?	-	-	intronic	46	0	0	325	8	2.461538462	0	0	NA	0	0	NA	0.000273031	19.33517885	18	1	0.664821146	18	2	0.335178854	unphased	0.538600207	0.538600207	1	0.02875	0.97125	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214055189	12	22657171	C	T	KIAA0528	CCDS31758.1	r.?	-	-	intronic	32	0	0	221	13	5.882352941	0	0	NA	0	0	NA	1.56E-10	12	11	1	1	NA	NA	NA	unphased	0.855614973	0.855614973	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214055468	12	23627896	C	T	-	-	-	-	-	-	7	0	0	118	12	10.16949153	0	0	NA	0	0	NA	1.28E-12	12	11	1	1	NA	NA	NA	unphased	1.479198767	1.479198767	1	0	0.995	0.005	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214055786	12	24625427	G	T	-	-	-	-	-	-	35	0	0	139	8	5.755395683	0	0	NA	0	0	NA	6.15E-07	6	5	1	1	NA	NA	NA	unphased	0.491824722	0.491824722	1	0.11125	0.88875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214056437	12	26510682	C	T	ITPR2	CCDS41764.1	r.?	-	-	intronic	15	0	0	164	8	4.87804878	0	0	NA	0	0	NA	2.13E-06	19	17	2	1	NA	NA	NA	unphased	1.050997783	1.050997783	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214056492	12	26647667	C	T	ITPR2	CCDS41764.1	r.?	-	-	intronic	23	0	0	149	11	7.382550336	0	0	NA	0	0	NA	3.58E-10	19	17	2	1	NA	NA	NA	unphased	1.590604027	1.590604027	1	0	0.99625	0.00375	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214056624	12	27008994	C	T	-	-	-	-	-	-	41	0	0	221	23	10.40723982	0	0	NA	0	0	NA	4.54E-23	19	17	2	1	NA	NA	NA	unphased	2.242287125	1.121143562	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214056803	12	27357756	C	T	-	-	-	-	-	-	14	0	0	520	14	2.692307692	0	0	NA	0	0	NA	5.90E-07	19	17	2	1	NA	NA	NA	unphased	0.58006993	0.58006993	1	0.04125	0.95875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214057185	12	28863299	G	T	-	-	-	-	-	-	45	0	0	138	19	13.76811594	0	0	NA	0	0	NA	1.10E-21	9.203254684	8	1	0.796745316	8	2	0.203254684	unphased	1.617575908	0.900281133	1.796745316	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214057301	12	29079881	C	T	-	-	-	-	-	-	31	0	0	332	122	36.74698795	0	0	NA	0	0	NA	1.97E-188	20	19	1	1	NA	NA	NA	unphased	8.284775465	1.035596933	8	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214057530	12	29495436	A	T	ERGIC2	CCDS41765.1	r.?	-	-	intronic	27	0	0	307	9	2.931596091	0	0	NA	0	0	NA	3.05E-05	20	19	1	1	NA	NA	NA	unphased	0.660941664	0.660941664	1	0.0075	0.9925	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214057658	12	29757567	C	T	TMTC1	CCDS8718.1	r.?	-	-	intronic	30	0	0	244	12	4.918032787	0	0	NA	0	0	NA	5.92E-09	20	19	1	1	NA	NA	NA	unphased	1.108792846	1.108792846	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214057727	12	29894478	C	T	TMTC1	CCDS8718.1	r.?	-	-	intronic	24	0	0	238	203	85.29411765	0	0	NA	0	0	NA	0	20	19	1	1	NA	NA	NA	unphased	19.22994652	1.012102449	19	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214057912	12	30917217	A	T	AC010198.2	ENST00000500076	r.?	-	-	intronic	41	0	0	110	11	10	0	0	NA	0	0	NA	1.32E-11	8	6	2	1	NA	NA	NA	unphased	1.054545455	1.054545455	1	0.005	0.99375	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214058216	12	32298298	G	T	BICD1	CCDS8726.1	r.?	-	-	intronic	35	0	0	94	23	24.46808511	0	0	NA	0	0	NA	4.19E-32	8	6	2	1	NA	NA	NA	unphased	2.580270793	0.860090264	3	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214058478	12	33869177	G	T	-	-	-	-	-	-	26	0	0	111	8	7.207207207	0	0	NA	0	0	NA	1.09E-07	8	6	2	1	NA	NA	NA	unphased	0.76003276	0.76003276	1	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214059494	12	40339712	G	T	SLC2A13	CCDS8736.2	r.?	-	-	intronic	20	0	0	57	20	35.0877193	0	0	NA	0	0	NA	9.67E-32	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	1.774937802	1.173033153	1.513118191	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214059746	12	43675342	C	T	-	-	-	-	-	-	40	0	0	83	14	16.86746988	0	0	NA	0	0	NA	1.17E-17	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	0.853253233	0.853253233	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214060154	12	49465380	C	T	RHEBL1	CCDS8778.1	r.?	-	-	upstream	27	0	0	68	8	11.76470588	0	0	NA	0	0	NA	2.21E-09	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	0.595126204	1.159822853	0.513118191	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214060174	12	49647784	A	T	-	-	-	-	-	-	17	0	0	43	6	13.95348837	0	0	NA	0	0	NA	8.13E-08	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	0.705847359	0.705847359	1	0.00625	0.99375	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214060194	12	49966152	C	T	MCRS1	CCDS8787.1	r.?	-	-	upstream	30	0	0	62	13	20.96774194	0	0	NA	0	0	NA	8.08E-18	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	1.060668477	1.060668477	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214060376	12	51741186	C	T	GALNT6	CCDS8813.1	r.?	-	-	downstream	23	0	0	59	25	42.37288136	0	0	NA	0	0	NA	7.66E-42	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	2.143463024	1.416586646	1.513118191	0	0.99375	0.00625	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214060842	12	56857412	C	T	SPRYD4	CCDS8920.1	r.?	-	-	upstream	23	0	0	65	14	21.53846154	0	0	NA	0	0	NA	2.93E-19	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	1.089538743	1.089538743	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214060881	12	57257838	A	T	-	-	-	-	-	-	29	0	0	69	12	17.39130435	0	0	NA	0	0	NA	1.65E-15	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	0.87975178	0.87975178	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214061149	12	61415771	C	T	-	-	-	-	-	-	29	0	0	59	13	22.03389831	0	0	NA	0	0	NA	3.99E-18	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	1.114600772	1.114600772	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214061224	12	62296178	C	T	FAM19A2	CCDS8962.1	r.?	-	-	intronic	27	0	0	75	16	21.33333333	0	0	NA	0	0	NA	9.88E-22	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	1.079162184	1.079162184	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214061227	12	62352130	C	T	FAM19A2	CCDS8962.1	r.?	-	-	intronic	37	0	0	70	19	27.14285714	0	0	NA	0	0	NA	9.50E-28	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	1.373041171	1.373041171	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214061339	12	64056995	C	T	ENSG00000177990	CCDS31851.1	r.?	-	-	intronic	35	0	0	67	15	22.3880597	0	0	NA	0	0	NA	8.27E-21	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	1.132516284	1.132516284	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214061589	12	67512647	A	T	-	-	-	-	-	-	35	0	0	61	14	22.95081967	0	0	NA	0	0	NA	1.10E-19	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	1.160983907	1.160983907	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214061693	12	69073417	C	T	AC090061.1	ENST00000500695	r.?	-	-	intronic	31	0	0	62	22	35.48387097	0	0	NA	0	0	NA	6.75E-35	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	1.794977423	1.186277075	1.513118191	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214061871	12	71450004	A	T	-	-	-	-	-	-	33	0	0	61	8	13.1147541	0	0	NA	0	0	NA	9.09E-10	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	0.663419375	1.292917278	0.513118191	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214061961	12	73242021	G	T	-	-	-	-	-	-	38	0	0	62	16	25.80645161	0	0	NA	0	0	NA	3.36E-23	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	1.305438126	1.305438126	1	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214061983	12	73619274	A	T	-	-	-	-	-	-	35	0	0	57	23	40.35087719	0	0	NA	0	0	NA	5.38E-38	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	2.041178473	1.348988126	1.513118191	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214062003	12	73893042	C	T	-	-	-	-	-	-	34	0	0	62	16	25.80645161	0	0	NA	0	0	NA	3.36E-23	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	1.305438126	1.305438126	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214062007	12	73915228	A	T	-	-	-	-	-	-	26	0	0	61	11	18.03278689	0	0	NA	0	0	NA	1.62E-14	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	0.912201641	0.912201641	1	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214062315	12	78478659	G	T	NAV3	CCDS41815.1	r.?	-	-	intronic	37	0	0	57	19	33.33333333	0	0	NA	0	0	NA	1.01E-29	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	1.686190912	1.114381495	1.513118191	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214062330	12	78666618	A	T	-	-	-	-	-	-	32	0	0	77	14	18.18181818	0	0	NA	0	0	NA	3.82E-18	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	0.919740498	0.919740498	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214062783	12	86395247	C	T	MGAT4C	CCDS9030.1	r.?	-	-	intronic	41	0	0	52	12	23.07692308	0	0	NA	0	0	NA	4.19E-17	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	1.167362939	1.167362939	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214062790	12	86562848	C	T	-	-	-	-	-	-	32	0	0	78	21	26.92307692	97	0	0	130	46	35.38461538	1.99E-30	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	1.361923429	1.361923429	1	0	0.9925	0.0075	2	1	3.34E-71	1	YES	1_1	somatic	custom.pulldown.HiSeq
1352322	PD9768b	1214062814	12	86995055	G	T	-	-	-	-	-	-	18	0	0	56	14	25	0	0	NA	0	0	NA	2.91E-20	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	1.264643184	1.264643184	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214062882	12	87968809	A	T	-	-	-	-	-	-	31	0	0	52	14	26.92307692	0	0	NA	0	0	NA	9.04E-21	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	1.361923429	1.361923429	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214063020	12	90288796	A	T	-	-	-	-	-	-	32	0	0	94	17	18.08510638	0	0	NA	0	0	NA	1.12E-21	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	0.914848261	0.914848261	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214063163	12	92813499	C	T	CLLU1OS	CCDS31871.1	r.?	-	-	downstream	31	0	0	91	33	36.26373626	0	0	NA	0	0	NA	5.82E-52	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	1.834427476	1.212349099	1.513118191	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214063229	12	93787942	C	T	NUDT4P1	CCDS9044.1	r.?	-	-	intronic	17	0	0	69	16	23.1884058	0	0	NA	0	0	NA	2.27E-22	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	1.173002374	1.173002374	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214063434	12	96145419	C	T	NTN4	CCDS9054.1	r.?	-	-	intronic	14	0	0	40	10	25	0	0	NA	0	0	NA	7.22E-15	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	1.264643184	1.264643184	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214063492	12	96991162	C	T	-	-	-	-	-	-	30	0	0	60	6	10	0	0	NA	0	0	NA	6.21E-07	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	0.505857274	0.985849425	0.513118191	0.00375	0.995	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214063644	12	99216045	C	T	ANKS1B	ENST00000329257	r.?	-	-	intronic	34	0	0	60	17	28.33333333	0	0	NA	0	0	NA	2.41E-25	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	1.433262275	1.433262275	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214063647	12	99240295	A	T	ANKS1B	ENST00000329257	r.?	-	-	intronic	29	0	0	57	17	29.8245614	0	0	NA	0	0	NA	8.82E-26	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	1.508697132	0.99707818	1.513118191	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214064140	12	106192285	C	T	-	-	-	-	-	-	36	0	0	53	5	9.433962264	0	0	NA	0	0	NA	7.34E-06	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	0.477223843	0.930046627	0.513118191	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214064270	12	108346079	C	T	-	-	-	-	-	-	30	0	0	61	17	27.86885246	0	0	NA	0	0	NA	3.33E-25	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	1.409766173	1.409766173	1	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214064476	12	111295074	C	T	CCDC63	CCDS9151.1	r.?	-	-	intronic	10	0	0	48	10	20.83333333	0	0	NA	0	0	NA	5.37E-14	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	1.05386932	1.05386932	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214064530	12	112207431	C	T	ALDH2	CCDS9155.1	r.?	-	-	intronic	20	0	0	55	16	29.09090909	0	0	NA	0	0	NA	3.78E-24	2.513118191	1	1	0.486881809	2	1	0.513118191	unphased	1.471584796	1.471584796	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214064662	12	114475174	A	T	-	-	-	-	-	-	6	0	0	46	6	13.04347826	0	0	NA	1	0	0	1.23E-07	3.809816191	2	1	0.190183809	2	2	0.809816191	unphased	0.828948357	1.023625319	0.809816191	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214064706	12	115098653	C	T	-	-	-	-	-	-	13	0	0	61	14	22.95081967	0	0	NA	0	0	NA	1.10E-19	3.809816191	2	1	0.190183809	2	2	0.809816191	unphased	1.458586726	1.458586726	1	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214064746	12	115557753	A	T	-	-	-	-	-	-	32	0	0	64	8	12.5	0	0	NA	0	0	NA	1.35E-09	3.809816191	2	1	0.190183809	2	2	0.809816191	unphased	0.794408842	0.980974264	0.809816191	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214064896	12	117367781	C	T	FBXW8	CCDS9182.1	r.?	-	-	intronic	42	0	0	64	6	9.375	0	0	NA	0	0	NA	9.14E-07	3.809816191	2	1	0.190183809	2	2	0.809816191	unphased	0.595806632	0.735730698	0.809816191	0.00375	0.99625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214065009	12	118826618	G	T	SUDS3	CCDS44993.1	r.?	-	-	intronic	16	0	0	56	7	12.5	0	0	NA	0	0	NA	1.46E-08	3.809816191	2	1	0.190183809	2	2	0.809816191	unphased	0.794408842	0.980974264	0.809816191	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214065075	12	120001648	C	T	AC084881.2	ENST00000509470	r.?	-	-	intronic	25	0	0	53	12	22.64150943	0	0	NA	0	0	NA	5.39E-17	3.809816191	2	1	0.190183809	2	2	0.809816191	unphased	1.438929223	1.438929223	1	0	0.99625	0.00375	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214065569	12	125842586	G	T	TMEM132B	CCDS41859.1	r.?	-	-	intronic	31	0	0	61	18	29.50819672	0	0	NA	0	0	NA	4.08E-27	3.809816191	2	1	0.190183809	2	2	0.809816191	unphased	1.875325791	0.937662896	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214065769	12	129219862	C	T	-	-	-	-	-	-	23	0	0	61	11	18.03278689	0	0	NA	0	0	NA	1.62E-14	3.809816191	2	1	0.190183809	2	2	0.809816191	unphased	1.146032428	1.146032428	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214065851	12	129923950	G	T	TMEM132D	CCDS9266.1	r.?	-	-	intronic	32	0	0	68	11	16.17647059	0	0	NA	0	0	NA	5.76E-14	3.809816191	2	1	0.190183809	2	2	0.809816191	unphased	1.028058501	1.028058501	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214065882	12	130292414	C	T	TMEM132D	CCDS9266.1	r.?	-	-	intronic	29	0	0	49	18	36.73469388	0	0	NA	0	0	NA	3.80E-29	3.809816191	2	1	0.190183809	2	2	0.809816191	unphased	2.33458925	1.167294625	2	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214066131	12	133172147	C	T	-	-	-	-	-	-	16	0	0	62	21	33.87096774	0	0	NA	0	0	NA	7.22E-33	3.809816191	2	1	0.190183809	2	2	0.809816191	unphased	2.152591701	1.076295851	2	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214066232	13	19151857	G	T	-	-	-	-	-	-	28	0	0	44	12	27.27272727	0	0	NA	0	0	NA	4.44E-18	4	2	2	1	NA	NA	NA	unphased	1.785123967	0.892561983	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214066658	13	21064060	A	T	CRYL1	CCDS41871.1	r.?	-	-	intronic	20	0	0	80	34	42.5	0	0	NA	0	0	NA	2.05E-56	4	2	2	1	NA	NA	NA	unphased	2.781818182	1.390909091	2	0	0.995	0.005	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214067205	13	25964424	G	T	ATP8A2	CCDS41873.1	r.?	-	-	intronic	36	0	0	58	15	25.86206897	0	0	NA	0	0	NA	7.42E-22	4	2	2	1	NA	NA	NA	unphased	1.692789969	0.846394984	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214067533	13	29532198	C	T	-	-	-	-	-	-	34	0	0	73	19	26.02739726	0	0	NA	0	0	NA	2.35E-27	4	2	2	1	NA	NA	NA	unphased	1.703611457	0.851805729	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214067851	13	33106889	A	T	N4BP2L2	CCDS9346.1	r.?	-	-	intronic	10	0	0	81	6	7.407407407	0	0	NA	0	0	NA	3.68E-06	4	2	2	1	NA	NA	NA	unphased	0.484848485	0.484848485	1	0.0625	0.9375	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214067858	13	33185946	C	T	PDS5B	CCDS41878.1	r.?	-	-	intronic	22	0	0	70	12	17.14285714	0	0	NA	0	0	NA	1.99E-15	4	2	2	1	NA	NA	NA	unphased	1.122077922	1.122077922	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214068066	13	37323333	C	T	-	-	-	-	-	-	32	0	0	54	16	29.62962963	0	0	NA	0	0	NA	2.69E-24	3	2	1	1	NA	NA	NA	unphased	1.643097643	0.821548822	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214068072	13	37372897	C	T	-	-	-	-	-	-	36	0	0	49	15	30.6122449	0	0	NA	0	0	NA	4.10E-23	3	2	1	1	NA	NA	NA	unphased	1.697588126	0.848794063	2	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214068198	13	39260001	C	T	FREM2	CCDS31960.1	r.?	-	-	upstream	37	0	0	69	10	14.49275362	0	0	NA	0	0	NA	2.54E-12	3	2	1	1	NA	NA	NA	unphased	0.803689065	0.803689065	1	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214068202	13	39319962	C	T	FREM2	CCDS31960.1	r.?	-	-	intronic	42	0	0	62	7	11.29032258	0	0	NA	0	0	NA	3.02E-08	3	2	1	1	NA	NA	NA	unphased	0.626099707	0.626099707	1	0.0125	0.9875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214068362	13	41750528	C	T	AL354696.6	ENST00000499512	r.?	-	-	intronic	29	0	0	68	20	29.41176471	0	0	NA	0	0	NA	6.23E-30	3	2	1	1	NA	NA	NA	unphased	1.631016043	0.815508021	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214068472	13	43363910	A	T	C13orf30	CCDS9386.1	r.1468a>u	c.?	p.?	3'UTR variant	30	0	0	69	10	14.49275362	0	0	NA	0	0	NA	2.54E-12	3	2	1	1	NA	NA	NA	unphased	0.803689065	0.803689065	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214068570	13	44849156	C	T	-	-	-	-	-	-	33	0	0	68	24	35.29411765	0	0	NA	0	0	NA	7.25E-38	3	2	1	1	NA	NA	NA	unphased	1.957219251	0.978609626	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214068817	13	48146188	C	T	-	-	-	-	-	-	39	0	0	59	12	20.33898305	0	0	NA	0	0	NA	2.20E-16	3	2	1	1	NA	NA	NA	unphased	1.12788906	1.12788906	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214068872	13	48693315	G	T	-	-	-	-	-	-	30	0	0	65	10	15.38461538	0	0	NA	0	0	NA	1.36E-12	3	2	1	1	NA	NA	NA	unphased	0.853146853	0.853146853	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214068878	13	48749317	C	T	-	-	-	-	-	-	31	0	0	71	17	23.94366197	0	0	NA	0	0	NA	6.12E-24	3	2	1	1	NA	NA	NA	unphased	1.327784891	1.327784891	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214069012	13	50866391	C	T	-	-	-	-	-	-	33	0	0	59	15	25.42372881	0	0	NA	0	0	NA	9.90E-22	3	2	1	1	NA	NA	NA	unphased	1.409861325	1.409861325	1	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214069380	13	57349464	C	T	-	-	-	-	-	-	31	0	0	55	18	32.72727273	0	0	NA	0	0	NA	4.61E-28	3	2	1	1	NA	NA	NA	unphased	1.814876033	0.907438017	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214069450	13	58500176	C	T	-	-	-	-	-	-	35	0	0	68	9	13.23529412	0	0	NA	0	0	NA	7.38E-11	3	2	1	1	NA	NA	NA	unphased	0.733957219	0.733957219	1	0.005	0.995	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214069460	13	58626261	C	T	-	-	-	-	-	-	11	0	0	65	14	21.53846154	0	0	NA	0	0	NA	2.93E-19	3	2	1	1	NA	NA	NA	unphased	1.194405594	1.194405594	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214069482	13	59171191	A	T	-	-	-	-	-	-	35	0	0	55	20	36.36363636	0	0	NA	0	0	NA	4.08E-32	3	2	1	1	NA	NA	NA	unphased	2.016528926	1.008264463	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214069654	13	62201498	A	T	-	-	-	-	-	-	44	0	0	68	27	39.70588235	0	0	NA	0	0	NA	4.16E-44	3	2	1	1	NA	NA	NA	unphased	2.201871658	1.100935829	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214069722	13	63427210	C	T	-	-	-	-	-	-	34	0	0	53	9	16.98113208	0	0	NA	0	0	NA	7.10E-12	3	2	1	1	NA	NA	NA	unphased	0.941680961	0.941680961	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214069915	13	64509860	G	T	-	-	-	-	-	-	41	0	0	62	10	16.12903226	0	0	NA	0	0	NA	8.29E-13	3	2	1	1	NA	NA	NA	unphased	0.894428152	0.894428152	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214070039	13	66610375	A	T	-	-	-	-	-	-	37	0	0	53	13	24.52830189	0	0	NA	0	0	NA	8.53E-19	3	2	1	1	NA	NA	NA	unphased	1.360205832	1.360205832	1	0.00125	0.99375	0.005	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214070132	13	67957630	C	T	-	-	-	-	-	-	34	0	0	54	11	20.37037037	0	0	NA	0	0	NA	3.84E-15	3	2	1	1	NA	NA	NA	unphased	1.12962963	1.12962963	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214070159	13	68304673	G	T	-	-	-	-	-	-	38	0	0	51	9	17.64705882	0	0	NA	1	0	0	4.92E-12	3	2	1	1	NA	NA	NA	unphased	0.978609626	0.978609626	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214070180	13	68797836	G	T	-	-	-	-	-	-	36	0	0	84	34	40.47619048	0	0	NA	0	0	NA	1.68E-55	3	2	1	1	NA	NA	NA	unphased	2.244588745	1.122294372	2	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214070263	13	69819420	C	T	-	-	-	-	-	-	32	0	0	73	16	21.91780822	0	0	NA	0	0	NA	6.15E-22	3	2	1	1	NA	NA	NA	unphased	1.215442092	1.215442092	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214070294	13	70492115	C	T	KLHL1	CCDS9445.1	r.?	-	-	intronic	41	0	0	68	30	44.11764706	0	0	NA	0	0	NA	1.38E-50	3	2	1	1	NA	NA	NA	unphased	2.446524064	1.223262032	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214070305	13	70577202	G	T	KLHL1	CCDS9445.1	r.?	-	-	intronic	30	0	0	56	20	35.71428571	0	0	NA	0	0	NA	6.31E-32	3	2	1	1	NA	NA	NA	unphased	1.980519481	0.99025974	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214070690	13	75972398	G	T	TBC1D4	CCDS41901.1	r.?	-	-	intronic	47	0	0	84	13	15.47619048	0	0	NA	0	0	NA	5.49E-16	3	2	1	1	NA	NA	NA	unphased	0.858225108	0.858225108	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214070827	13	78159798	C	T	SCEL	CCDS9458.1	r.?	-	-	intronic	22	0	0	45	14	31.11111111	0	0	NA	0	0	NA	8.81E-22	3	2	1	1	NA	NA	NA	unphased	1.725252525	0.862626263	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214070896	13	79576308	G	T	-	-	-	-	-	-	34	0	0	60	17	28.33333333	0	0	NA	0	0	NA	2.41E-25	3	2	1	1	NA	NA	NA	unphased	1.571212121	0.785606061	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214071076	13	82670995	C	T	-	-	-	-	-	-	22	0	0	86	17	19.76744186	0	0	NA	0	0	NA	2.19E-22	3	2	1	1	NA	NA	NA	unphased	1.096194503	1.096194503	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214071201	13	84639111	A	T	-	-	-	-	-	-	29	0	0	54	18	33.33333333	0	0	NA	0	0	NA	3.12E-28	3	2	1	1	NA	NA	NA	unphased	1.848484848	0.924242424	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214071432	13	88454074	C	T	-	-	-	-	-	-	33	0	0	45	11	24.44444444	0	0	NA	0	0	NA	4.24E-16	3	2	1	1	NA	NA	NA	unphased	1.355555556	1.355555556	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214071659	13	91590017	C	T	-	-	-	-	-	-	37	0	0	71	11	15.49295775	226	1	0.442477876	207	31	14.97584541	9.49E-14	3	2	1	1	NA	NA	NA	unphased	0.85915493	0.85915493	1	0.00125	0.99875	0	2	1	1.41E-35	0.677881069	YES	1_1	somatic	custom.pulldown.HiSeq
1352322	PD9768b	1214071731	13	93200387	C	T	GPC5	CCDS9468.1	r.?	-	-	intronic	10	0	0	53	8	15.09433962	0	0	NA	0	0	NA	2.83E-10	3	2	1	1	NA	NA	NA	unphased	0.837049743	0.837049743	1	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214071751	13	93438524	G	T	GPC5	CCDS9468.1	r.?	-	-	intronic	42	0	0	61	14	22.95081967	0	0	NA	0	0	NA	1.10E-19	3	2	1	1	NA	NA	NA	unphased	1.272727273	1.272727273	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214071782	13	93967294	A	T	GPC6	CCDS9469.1	r.?	-	-	intronic	34	0	0	40	13	32.5	0	0	NA	0	0	NA	1.30E-20	3	2	1	1	NA	NA	NA	unphased	1.802272727	0.901136364	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214071855	13	94954272	G	T	GPC6	CCDS9469.1	r.?	-	-	intronic	32	0	0	58	7	12.06896552	216	0	0	206	34	16.50485437	1.88E-08	3	2	1	1	NA	NA	NA	unphased	0.669278997	0.669278997	1	0.005	0.995	0	2	1	2.24E-40	1	YES	1_1	somatic	custom.pulldown.HiSeq
1352322	PD9768b	1214072135	13	99387694	C	T	SLC15A1	CCDS9489.1	r.?	-	-	intronic	28	0	0	70	14	20	0	0	NA	0	0	NA	9.08E-19	3	2	1	1	NA	NA	NA	unphased	1.109090909	1.109090909	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214072143	13	99565548	A	T	DOCK9	CCDS45062.1	r.?	-	-	intronic	21	0	0	56	13	23.21428571	0	0	NA	0	0	NA	1.89E-18	3	2	1	1	NA	NA	NA	unphased	1.287337662	1.287337662	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214072193	13	100204539	C	T	TM9SF2	CCDS9493.1	r.1637c>u	c.1447C>T	p.P483S	missense	38	0	0	55	9	16.36363636	202	0	0	209	24	11.48325359	1.01E-11	3	2	1	1	NA	NA	NA	unphased	0.907438017	0.907438017	1	0.00125	0.99875	0	2	1	4.82E-25	1	YES	1_1	somatic	custom.pulldown.HiSeq
1352322	PD9768b	1214072225	13	100503513	C	T	CLYBL	ENST00000376360	r.?	-	-	intronic	19	0	0	51	9	17.64705882	0	0	NA	0	0	NA	4.92E-12	3	2	1	1	NA	NA	NA	unphased	0.978609626	0.978609626	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214072296	13	101558919	A	T	-	-	-	-	-	-	41	0	0	53	9	16.98113208	0	0	NA	0	0	NA	7.10E-12	3	2	1	1	NA	NA	NA	unphased	0.941680961	0.941680961	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214072567	13	106058636	C	T	-	-	-	-	-	-	31	0	0	59	12	20.33898305	0	0	NA	0	0	NA	2.20E-16	3	2	1	1	NA	NA	NA	unphased	1.12788906	1.12788906	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214072584	13	106398456	C	T	-	-	-	-	-	-	32	0	0	77	17	22.07792208	0	0	NA	0	0	NA	2.82E-23	3	2	1	1	NA	NA	NA	unphased	1.224321133	1.224321133	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214072589	13	106468807	C	T	-	-	-	-	-	-	30	0	0	83	12	14.45783133	0	0	NA	0	0	NA	1.70E-14	3	2	1	1	NA	NA	NA	unphased	0.801752464	0.801752464	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214072810	13	109378982	A	T	MYO16	CCDS32008.1	r.?	-	-	intronic	22	0	0	56	10	17.85714286	0	0	NA	0	0	NA	2.82E-13	3	2	1	1	NA	NA	NA	unphased	0.99025974	0.99025974	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214073011	13	112310977	A	T	ENSG00000204398	ENST00000375713	r.?	-	-	intronic	30	0	0	57	16	28.07017544	0	0	NA	0	0	NA	7.28E-24	3	2	1	1	NA	NA	NA	unphased	1.55661882	0.77830941	2	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214073099	13	113194040	C	T	TUBGCP3	CCDS9525.1	r.?	-	-	intronic	32	0	0	71	14	19.71830986	0	0	NA	0	0	NA	1.13E-18	3	2	1	1	NA	NA	NA	unphased	1.09346991	1.09346991	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214073239	13	114890459	C	T	RASA3	CCDS32016.1	r.?	-	-	intronic	19	0	0	70	26	37.14285714	0	0	NA	0	0	NA	1.35E-41	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214074046	14	24454170	C	T	DHRS4L2	CCDS9606.2	r.?	-	-	upstream	33	0	0	76	12	15.78947368	0	0	NA	0	0	NA	5.63E-15	1.777411379	1	0	0.222588621	2	0	0.777411379	unphased	0.682557778	0.877987892	0.777411379	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214074150	14	26731558	C	T	-	-	-	-	-	-	36	0	0	49	22	44.89795918	0	0	NA	0	0	NA	1.04E-37	1.777411379	1	0	0.222588621	2	0	0.777411379	unphased	1.940878578	1.091969254	1.777411379	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214074156	14	26849529	C	T	-	-	-	-	-	-	29	0	0	75	34	45.33333333	0	0	NA	0	0	NA	1.20E-57	1.777411379	1	0	0.222588621	2	0	0.777411379	unphased	1.959699219	1.102558047	1.777411379	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214074176	14	27241584	C	T	-	-	-	-	-	-	30	0	0	47	22	46.80851064	0	0	NA	0	0	NA	3.14E-38	1.777411379	1	0	0.222588621	2	0	0.777411379	unphased	2.023469156	1.138436031	1.777411379	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214074267	14	28856620	C	T	-	-	-	-	-	-	40	0	0	53	9	16.98113208	0	0	NA	0	0	NA	7.10E-12	1.777411379	1	0	0.222588621	2	0	0.777411379	unphased	0.734071572	0.944251129	0.777411379	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214074923	14	40952677	C	T	-	-	-	-	-	-	32	0	0	62	32	51.61290323	0	0	NA	0	0	NA	9.07E-57	1.764536825	1	0	0.235463175	2	0	0.764536825	unphased	2.224511675	1.260677388	1.764536825	0	0.995	0.005	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214074964	14	41473647	A	T	-	-	-	-	-	-	30	0	0	53	22	41.50943396	0	0	NA	0	0	NA	9.50E-37	1.764536825	1	0	0.235463175	2	0	0.764536825	unphased	1.789053022	1.013893843	1.764536825	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214075057	14	43223659	C	T	-	-	-	-	-	-	19	0	0	51	10	19.60784314	0	0	NA	0	0	NA	1.04E-13	1.764536825	1	0	0.235463175	2	0	0.764536825	unphased	0.845096347	1.105370362	0.764536825	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214075138	14	44384626	G	T	-	-	-	-	-	-	32	0	0	46	23	50	0	0	NA	0	0	NA	8.79E-41	1.764536825	1	0	0.235463175	2	0	0.764536825	unphased	2.154995685	1.221281219	1.764536825	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214075249	14	46858628	A	T	-	-	-	-	-	-	31	0	0	56	21	37.5	0	0	NA	0	0	NA	5.43E-34	1.764536825	1	0	0.235463175	2	0	0.764536825	unphased	1.616246764	0.915960915	1.764536825	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214075305	14	47579606	G	T	MDGA2	CCDS41948.1	r.?	-	-	intronic	33	0	0	51	21	41.17647059	0	0	NA	0	0	NA	4.73E-35	1.764536825	1	0	0.235463175	2	0	0.764536825	unphased	1.774702329	1.005761004	1.764536825	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214075321	14	47962103	A	T	MDGA2	CCDS45098.1	r.?	-	-	intronic	23	0	0	62	33	53.22580645	0	0	NA	0	0	NA	4.14E-59	1.764536825	1	0	0.235463175	2	0	0.764536825	unphased	2.294027665	1.300073556	1.764536825	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214075782	14	56507531	C	T	-	-	-	-	-	-	20	0	0	38	12	31.57894737	0	0	NA	0	0	NA	5.86E-19	1.764536825	1	0	0.235463175	2	0	0.764536825	unphased	1.361049906	1.361049906	1	0	0.99625	0.00375	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214076229	14	65167069	C	T	PLEKHG3	CCDS32098.1	r.?	-	-	upstream	27	0	0	51	21	41.17647059	2	0	0	0	0	NA	4.73E-35	1.764536825	1	0	0.235463175	2	0	0.764536825	unphased	1.774702329	1.005761004	1.764536825	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214076468	14	70276014	C	T	-	-	-	-	-	-	29	0	0	46	22	47.82608696	0	0	NA	0	0	NA	1.68E-38	1.764536825	1	0	0.235463175	2	0	0.764536825	unphased	2.061300221	1.168182036	1.764536825	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214076859	14	76728298	G	T	-	-	-	-	-	-	28	0	0	48	22	45.83333333	0	0	NA	0	0	NA	5.76E-38	2.092087904	2	0	0.907912096	2	1	0.092087904	unphased	2.125540289	1.062770145	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214077155	14	82356849	C	T	-	-	-	-	-	-	29	0	0	59	6	10.16949153	0	0	NA	0	0	NA	5.61E-07	2.092087904	2	0	0.907912096	2	1	0.092087904	unphased	0.471614486	0.471614486	1	0.1075	0.8925	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214077364	14	86639253	G	T	-	-	-	-	-	-	24	0	0	60	20	33.33333333	0	0	NA	0	0	NA	3.30E-31	2.092087904	2	0	0.907912096	2	1	0.092087904	unphased	1.545847483	0.810229929	1.907912096	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214077387	14	86965793	A	T	-	-	-	-	-	-	26	0	0	44	18	40.90909091	0	0	NA	0	0	NA	3.47E-30	2.092087904	2	0	0.907912096	2	1	0.092087904	unphased	1.897176457	0.994373095	1.907912096	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214077388	14	86971544	G	T	-	-	-	-	-	-	30	0	0	57	23	40.35087719	0	0	NA	0	0	NA	5.38E-38	2.092087904	2	0	0.907912096	2	1	0.092087904	unphased	1.871289058	0.980804651	1.907912096	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214077429	14	87669981	G	T	-	-	-	-	-	-	27	0	0	58	24	41.37931034	0	0	NA	0	0	NA	6.49E-40	2.092087904	2	0	0.907912096	2	1	0.092087904	unphased	1.918983082	1.005802671	1.907912096	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214077782	14	93912890	C	T	KIAA1409	CCDS9911.2	r.?	-	-	intronic	20	0	0	43	21	48.8372093	0	0	NA	0	0	NA	4.52E-37	2.092087904	2	0	0.907912096	2	1	0.092087904	unphased	2.264846312	1.132423156	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214077833	14	94988935	C	T	SERPINA12	CCDS9926.1	r.?	-	-	upstream	8	0	0	48	24	50	0	0	NA	0	0	NA	1.71E-42	2.092087904	2	0	0.907912096	2	1	0.092087904	unphased	2.318771225	1.159385612	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214077952	14	97028975	C	T	PAPOLA	CCDS9946.1	r.?	-	-	intronic	36	0	0	49	12	24.48979592	0	0	NA	0	0	NA	1.90E-17	2.092087904	2	0	0.907912096	2	1	0.092087904	unphased	1.135724681	1.135724681	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214078267	14	104304765	C	T	PPP1R13B	CCDS41997.1	r.?	-	-	intronic	31	0	0	49	20	40.81632653	0	0	NA	0	0	NA	2.35E-33	2.092087904	2	0	0.907912096	2	1	0.092087904	unphased	1.892874469	0.992118281	1.907912096	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214079457	15	20472313	C	T	ENSG00000215407	ENST00000400226	r.?	-	-	intronic	63	0	0	121	15	12.39669421	0	0	NA	0	0	NA	1.00E-16	2	1	1	1	NA	NA	NA	unphased	0.563486101	0.563486101	1	0.12	0.88	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214079598	15	22352566	G	T	-	-	-	-	-	-	47	0	0	64	10	15.625	0	0	NA	0	0	NA	1.16E-12	2	1	1	1	NA	NA	NA	unphased	0.710227273	0.710227273	1	0.00625	0.99375	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214079682	15	22693870	A	T	-	-	-	-	-	-	14	0	0	100	28	28	0	0	NA	0	0	NA	1.31E-40	2	1	1	1	NA	NA	NA	unphased	1.272727273	1.272727273	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214079726	15	23156429	A	T	-	-	-	-	-	-	47	0	0	50	8	16	0	0	NA	0	0	NA	1.74E-10	2	1	1	1	NA	NA	NA	unphased	0.727272727	0.727272727	1	0.00375	0.99625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214079917	15	25651401	C	T	UBE3A	CCDS45191.1	r.?	-	-	intronic	36	0	0	58	11	18.96551724	0	0	NA	0	0	NA	8.96E-15	2	1	1	1	NA	NA	NA	unphased	0.862068966	0.862068966	1	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214079995	15	27175348	C	T	GABRA5	CCDS45194.1	r.?	-	-	intronic	19	0	0	56	11	19.64285714	0	0	NA	0	0	NA	5.91E-15	2	1	1	1	NA	NA	NA	unphased	0.892857143	0.892857143	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214080087	15	28956851	G	T	AC055876.6	ENST00000503380	r.?	-	-	downstream	15	0	0	63	11	17.46031746	0	0	NA	0	0	NA	2.37E-14	2	1	1	1	NA	NA	NA	unphased	0.793650794	0.793650794	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214080088	15	28956852	G	T	AC055876.6	ENST00000503380	r.?	-	-	downstream	16	0	0	62	12	19.35483871	0	0	NA	0	0	NA	4.19E-16	2	1	1	1	NA	NA	NA	unphased	0.879765396	0.879765396	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214080089	15	28981634	G	T	WHAMML2	ENST00000512149	r.?	-	-	upstream	16	0	0	45	10	22.22222222	0	0	NA	0	0	NA	2.66E-14	2	1	1	1	NA	NA	NA	unphased	1.01010101	1.01010101	1	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214080519	15	36544603	C	T	-	-	-	-	-	-	31	0	0	42	10	23.80952381	0	0	NA	0	0	NA	1.24E-14	2	1	1	1	NA	NA	NA	unphased	1.082251082	1.082251082	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214080694	15	40363126	A	T	AC021755.4	ENST00000504245	r.?	-	-	downstream	12	0	0	37	7	18.91891892	0	0	NA	0	0	NA	7.05E-10	2	1	1	1	NA	NA	NA	unphased	0.85995086	0.85995086	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214080725	15	40933209	C	T	CASC5	CCDS42023.1	r.6021c>u	c.5860C>T	p.R1954C	missense	38	0	0	45	7	15.55555556	125	1	0.8	144	15	10.41666667	3.00E-09	2	1	1	1	NA	NA	NA	unphased	0.707070707	0.707070707	1	0.00125	0.99875	0	2	1	1.42E-15	0.465577058	YES	1_1	somatic	custom.pulldown.HiSeq
1352322	PD9768b	1214081034	15	47289273	C	T	-	-	-	-	-	-	15	0	0	41	11	26.82926829	0	0	NA	0	0	NA	1.34E-16	2	1	1	1	NA	NA	NA	unphased	1.219512195	1.219512195	1	0.00125	0.9975	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214081103	15	47661191	A	T	-	-	-	-	-	-	34	0	0	48	9	18.75	0	0	NA	0	0	NA	2.75E-12	2	1	1	1	NA	NA	NA	unphased	0.852272727	0.852272727	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214081106	15	47697227	G	T	-	-	-	-	-	-	30	0	0	32	13	40.625	0	0	NA	0	0	NA	3.88E-22	2	1	1	1	NA	NA	NA	unphased	1.846590909	1.846590909	1	0	0.98875	0.01125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214081166	15	49264000	G	T	-	-	-	-	-	-	17	0	0	49	16	32.65306122	0	0	NA	0	0	NA	4.37E-25	2	1	1	1	NA	NA	NA	unphased	1.484230056	1.484230056	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214081356	15	53010977	C	T	-	-	-	-	-	-	24	0	0	51	10	19.60784314	0	0	NA	0	0	NA	1.04E-13	2	1	1	1	NA	NA	NA	unphased	0.891265597	0.891265597	1	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214081409	15	54478009	C	T	UNC13C	CCDS45264.1	r.?	-	-	intronic	21	0	0	49	7	14.28571429	0	0	NA	0	0	NA	5.58E-09	2	1	1	1	NA	NA	NA	unphased	0.649350649	0.649350649	1	0.005	0.995	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214081772	15	61828601	G	T	-	-	-	-	-	-	34	0	0	56	12	21.42857143	0	0	NA	0	0	NA	1.11E-16	2	1	1	1	NA	NA	NA	unphased	0.974025974	0.974025974	1	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214081781	15	62006583	A	T	-	-	-	-	-	-	26	0	0	52	10	19.23076923	0	0	NA	0	0	NA	1.28E-13	2	1	1	1	NA	NA	NA	unphased	0.874125874	0.874125874	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214081796	15	62312010	G	T	VPS13C	CCDS32257.1	r.?	-	-	intronic	39	0	0	46	8	17.39130435	0	0	NA	0	0	NA	8.61E-11	2	1	1	1	NA	NA	NA	unphased	0.790513834	0.790513834	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214081819	15	62548524	A	T	-	-	-	-	-	-	13	0	0	43	14	32.55813953	0	0	NA	0	0	NA	4.18E-22	2	1	1	1	NA	NA	NA	unphased	1.479915433	1.479915433	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214082267	15	70682945	A	T	-	-	-	-	-	-	22	0	0	51	13	25.49019608	0	0	NA	0	0	NA	4.87E-19	2	1	1	1	NA	NA	NA	unphased	1.158645276	1.158645276	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214082622	15	77473396	C	T	ENSG00000173517	CCDS42062.1	r.1152g>a	c.873G>A	p.W291*	nonsense	27	0	0	44	9	20.45454545	243	0	0	143	35	24.47552448	1.18E-12	2	1	1	1	NA	NA	NA	unphased	0.929752066	0.929752066	1	0.0025	0.9975	0	2	1	4.84E-48	1	YES	1_1	somatic	custom.pulldown.HiSeq
1352322	PD9768b	1214082763	15	80594206	G	T	-	-	-	-	-	-	41	0	0	51	9	17.64705882	0	0	NA	0	0	NA	4.92E-12	2	1	1	1	NA	NA	NA	unphased	0.802139037	0.802139037	1	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214082918	15	84162690	A	T	SH3GL3	CCDS10325.2	r.?	-	-	intronic	16	0	0	48	8	16.66666667	0	0	NA	0	0	NA	1.23E-10	2	1	1	1	NA	NA	NA	unphased	0.757575758	0.757575758	1	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214083121	15	88100821	C	T	-	-	-	-	-	-	25	0	0	63	12	19.04761905	0	0	NA	0	0	NA	5.15E-16	2	1	1	1	NA	NA	NA	unphased	0.865800866	0.865800866	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214083295	15	91136982	C	T	CRTC3	CCDS32331.1	r.452c>u	c.346C>T	p.R116*	nonsense	23	0	0	49	10	20.40816327	206	2	0.970873786	109	13	11.9266055	6.72E-14	2	1	1	1	NA	NA	NA	unphased	0.927643785	0.927643785	1	0	1	0	2	1	1.83E-14	0.275302805	YES	1_1	somatic	custom.pulldown.HiSeq
1352322	PD9768b	1214083314	15	91563713	C	T	VPS33B	CCDS10369.1	r.?	-	-	intronic	20	0	0	65	16	24.61538462	0	0	NA	0	0	NA	7.85E-23	2	1	1	1	NA	NA	NA	unphased	1.118881119	1.118881119	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214083394	15	93454803	A	T	CHD2	CCDS10374.2	r.?	-	-	intronic	23	0	0	61	12	19.67213115	0	0	NA	0	0	NA	3.39E-16	2	1	1	1	NA	NA	NA	unphased	0.894187779	0.894187779	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214083448	15	94471295	C	T	-	-	-	-	-	-	28	0	0	51	6	11.76470588	0	0	NA	0	0	NA	2.32E-07	2	1	1	1	NA	NA	NA	unphased	0.534759358	0.534759358	1	0.0375	0.9625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214083569	15	97327611	C	T	SPATA8	CCDS10376.1	r.?	-	-	intronic	9	0	0	49	13	26.53061224	0	0	NA	0	0	NA	2.71E-19	2	1	1	1	NA	NA	NA	unphased	1.20593692	1.20593692	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214083570	15	97334734	C	T	-	-	-	-	-	-	10	0	0	46	11	23.91304348	0	0	NA	0	0	NA	5.55E-16	2	1	1	1	NA	NA	NA	unphased	1.086956522	1.086956522	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214083594	15	97735279	A	T	-	-	-	-	-	-	15	0	0	52	10	19.23076923	0	0	NA	0	0	NA	1.28E-13	2	1	1	1	NA	NA	NA	unphased	0.874125874	0.874125874	1	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214083743	15	100383352	G	T	-	-	-	-	-	-	34	0	0	81	9	11.11111111	0	0	NA	0	0	NA	3.68E-10	3.107689431	2	1	0.892310569	2	2	0.107689431	unphased	0.628127108	0.628127108	1	0.015	0.985	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214083751	15	100460661	G	T	-	-	-	-	-	-	33	0	0	55	11	20	0	0	NA	0	0	NA	4.77E-15	3.107689431	2	1	0.892310569	2	2	0.107689431	unphased	1.130628795	1.130628795	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214083757	15	100667742	C	T	ADAMTS17	CCDS10383.1	r.?	-	-	intronic	10	0	0	58	19	32.75862069	0	0	NA	0	0	NA	1.50E-29	3.107689431	2	1	0.892310569	2	2	0.107689431	unphased	1.851891992	0.978640622	1.892310569	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214083766	15	100901327	A	T	-	-	-	-	-	-	26	0	0	72	11	15.27777778	0	0	NA	0	0	NA	1.12E-13	3.107689431	2	1	0.892310569	2	2	0.107689431	unphased	0.863674774	0.863674774	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214083771	15	100957336	C	T	LASS3	CCDS10384.1	r.?	-	-	intronic	14	0	0	46	8	17.39130435	0	0	NA	0	0	NA	8.61E-11	3.107689431	2	1	0.892310569	2	2	0.107689431	unphased	0.983155474	0.983155474	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214083946	16	900094	C	T	LMF1	CCDS45373.1	r.?	-	-	downstream	23	0	0	63	25	39.68253968	0	0	NA	0	0	NA	6.06E-41	5.787524616	3	2	0.212475384	3	3	0.787524616	unphased	3.306737762	1.102245921	3	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214084106	16	3383728	G	T	-	-	-	-	-	-	24	0	0	84	18	21.42857143	0	0	NA	0	0	NA	2.65E-24	5.787524616	3	2	0.212475384	3	3	0.787524616	unphased	1.785638392	0.892819196	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214084338	16	6125407	A	T	-	-	-	-	-	-	38	0	0	70	19	27.14285714	0	0	NA	0	0	NA	9.50E-28	3.500213656	2	1	0.499786344	2	2	0.500213656	unphased	1.640967083	1.094133901	1.499786344	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214084375	16	6522699	A	T	-	-	-	-	-	-	18	0	0	56	5	8.928571429	0	0	NA	0	0	NA	9.65E-06	3.500213656	2	1	0.499786344	2	2	0.500213656	unphased	0.539791804	1.079122485	0.500213656	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214084511	16	7861441	A	T	-	-	-	-	-	-	41	0	0	79	14	17.72151899	0	0	NA	0	0	NA	5.60E-18	3.500213656	2	1	0.499786344	2	2	0.500213656	unphased	1.071384238	1.071384238	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214084516	16	7963494	C	T	-	-	-	-	-	-	16	0	0	56	18	32.14285714	0	0	NA	0	0	NA	6.76E-28	3.500213656	2	1	0.499786344	2	2	0.500213656	unphased	1.943250493	0.971625247	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214084777	16	11023449	C	T	CIITA	CCDS10544.1	r.9279c>u	c.?	p.?	3'UTR variant	8	0	0	64	22	34.375	0	0	NA	0	0	NA	1.57E-34	3.500213656	2	1	0.499786344	2	2	0.500213656	unphased	2.078198444	1.039099222	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214084951	16	13123315	A	T	SHISA9	CCDS45417.1	r.?	-	-	intronic	17	0	0	67	17	25.37313433	0	0	NA	0	0	NA	2.03E-24	3.500213656	2	1	0.499786344	2	2	0.500213656	unphased	1.533975514	1.022796027	1.499786344	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214085291	16	16891468	A	T	-	-	-	-	-	-	32	0	0	59	18	30.50847458	0	0	NA	0	0	NA	2.03E-27	3.500213656	2	1	0.499786344	2	2	0.500213656	unphased	1.844441146	0.922220573	2	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214085604	16	20837459	C	T	ENSG00000005189	CCDS10591.1	r.?	-	-	intronic	42	0	0	69	23	33.33333333	0	0	NA	0	0	NA	1.15E-35	1	1	0	1	NA	NA	NA	unphased	1.181818182	1.181818182	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214085979	16	25337914	G	T	-	-	-	-	-	-	41	0	0	55	5	9.090909091	0	0	NA	0	0	NA	8.83E-06	1	1	0	1	NA	NA	NA	unphased	0.32231405	0.32231405	1	0.72375	0.27625	0	1	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214086935	16	32383798	C	T	-	-	-	-	-	-	50	0	0	101	12	11.88118812	0	0	NA	0	0	NA	1.93E-13	3	2	1	1	NA	NA	NA	unphased	0.658865887	0.658865887	1	0.0075	0.9925	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214090673	16	49309445	C	T	CBLN1	CCDS10736.1	r.?	-	-	downstream	6	0	0	43	20	46.51162791	0	0	NA	0	0	NA	8.21E-35	1.755790266	1	0	0.244209734	2	0	0.755790266	unphased	2.000578982	1.139417971	1.755790266	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214090684	16	49534438	C	T	ZNF423	CCDS32445.1	r.?	-	-	intronic	20	0	0	60	27	45	0	0	NA	0	0	NA	5.59E-46	1.755790266	1	0	0.244209734	2	0	0.755790266	unphased	1.935560165	1.102386887	1.755790266	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214090685	16	49536324	C	T	ZNF423	CCDS32445.1	r.?	-	-	intronic	12	0	0	43	17	39.53488372	0	0	NA	0	0	NA	2.84E-28	1.755790266	1	0	0.244209734	2	0	0.755790266	unphased	1.700492135	0.968505275	1.755790266	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214090820	16	51958779	C	T	-	-	-	-	-	-	46	0	0	56	24	42.85714286	0	0	NA	0	0	NA	2.23E-40	1.755790266	1	0	0.244209734	2	0	0.755790266	unphased	1.843390633	1.049892273	1.755790266	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214091172	16	57384683	C	T	-	-	-	-	-	-	19	0	0	66	10	15.15151515	0	0	NA	0	0	NA	1.60E-12	3.175765079	2	1	0.824234921	2	2	0.175765079	unphased	0.866851458	0.866851458	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214091564	16	62923254	A	T	-	-	-	-	-	-	24	0	0	38	6	15.78947368	0	0	NA	0	0	NA	3.76E-08	3.175765079	2	1	0.824234921	2	2	0.175765079	unphased	0.903350467	0.903350467	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214091606	16	63669984	G	T	-	-	-	-	-	-	35	0	0	77	13	16.88311688	0	0	NA	0	0	NA	1.67E-16	3.175765079	2	1	0.824234921	2	2	0.175765079	unphased	0.965920196	0.965920196	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214091652	16	64640639	A	T	-	-	-	-	-	-	34	0	0	58	11	18.96551724	0	0	NA	0	0	NA	8.96E-15	3.175765079	2	1	0.824234921	2	2	0.175765079	unphased	1.085058894	1.085058894	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214092592	16	76710343	C	T	-	-	-	-	-	-	32	0	0	76	17	22.36842105	0	0	NA	0	0	NA	2.21E-23	3.175765079	2	1	0.824234921	2	2	0.175765079	unphased	1.279746495	1.279746495	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214092605	16	76947911	A	T	-	-	-	-	-	-	26	0	0	60	13	21.66666667	0	0	NA	0	0	NA	5.07E-18	3.175765079	2	1	0.824234921	2	2	0.175765079	unphased	1.239597585	1.239597585	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214092706	16	78241970	A	T	WWOX	CCDS42196.1	r.?	-	-	intronic	24	0	0	60	19	31.66666667	0	0	NA	0	0	NA	3.21E-29	3.175765079	2	1	0.824234921	2	2	0.175765079	unphased	1.811719548	0.993139385	1.824234921	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214092776	16	79194166	A	T	WWOX	CCDS42196.1	r.?	-	-	intronic	27	0	0	67	14	20.89552239	0	0	NA	0	0	NA	4.66E-19	3.175765079	2	1	0.824234921	2	2	0.175765079	unphased	1.195478728	1.195478728	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214093043	16	82393781	C	T	-	-	-	-	-	-	26	0	0	66	8	12.12121212	0	0	NA	0	0	NA	1.73E-09	3.175765079	2	1	0.824234921	2	2	0.175765079	unphased	0.693481167	0.693481167	1	0.005	0.995	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214093093	16	83248133	C	T	CDH13	ENST00000268613	r.?	-	-	intronic	14	0	0	39	7	17.94871795	0	0	NA	0	0	NA	1.04E-09	3.175765079	2	1	0.824234921	2	2	0.175765079	unphased	1.026885574	1.026885574	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214093103	16	83467263	G	T	CDH13	ENST00000268613	r.?	-	-	intronic	26	0	0	49	8	16.32653061	0	0	NA	0	0	NA	1.47E-10	3.175765079	2	1	0.824234921	2	2	0.175765079	unphased	0.934076673	0.934076673	1	0.0025	0.99625	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214093339	16	86515153	A	T	AC125792.1	ENST00000501311	r.?	-	-	intronic	35	0	0	70	28	40	0	0	NA	0	0	NA	8.50E-46	3.175765079	2	1	0.824234921	2	2	0.175765079	unphased	2.28848785	1.144243925	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214094130	17	2018070	A	T	SMG6	CCDS11016.1	r.?	-	-	intronic	15	0	0	61	6	9.836065574	0	0	NA	0	0	NA	6.85E-07	7	4	3	1	NA	NA	NA	unphased	0.938897168	0.938897168	1	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214094268	17	3030516	C	T	OR1G1	CCDS11020.1	r.330g>a	c.330G>A	p.L110L	silent	37	0	0	94	39	41.4893617	225	0	0	210	71	33.80952381	5.84E-64	7	4	3	1	NA	NA	NA	unphased	3.960348162	0.990087041	4	0	1	0	2	1	2.76E-107	1	YES	1_1	somatic	custom.pulldown.HiSeq
1352322	PD9768b	1214095097	17	11693587	C	T	DNAH9	CCDS11160.1	r.?	-	-	intronic	29	0	0	70	12	17.14285714	0	0	NA	0	0	NA	1.99E-15	3	2	1	1	NA	NA	NA	unphased	0.950649351	0.950649351	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214095102	17	11772552	C	T	DNAH9	CCDS11160.1	r.10103c>u	c.10035C>T	p.I3345I	silent	26	0	0	62	12	19.35483871	268	0	0	212	29	13.67924528	4.19E-16	3	2	1	1	NA	NA	NA	unphased	1.073313783	1.073313783	1	0.00125	0.99875	0	2	1	3.39E-32	1	YES	1_1	somatic	custom.pulldown.HiSeq
1352322	PD9768b	1214095505	17	16192713	G	T	PIGL	CCDS11176.1	r.?	-	-	intronic	32	0	0	69	11	15.94202899	0	0	NA	0	0	NA	6.82E-14	3	2	1	1	NA	NA	NA	unphased	0.884057971	0.884057971	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214095813	17	20156463	C	T	CYTSB	CCDS32590.1	r.?	-	-	intronic	32	0	0	75	19	25.33333333	0	0	NA	0	0	NA	4.19E-27	3	2	1	1	NA	NA	NA	unphased	1.404848485	1.404848485	1	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214095841	17	20407280	C	T	-	-	-	-	-	-	7	0	0	52	8	15.38461538	0	0	NA	0	0	NA	2.42E-10	3	2	1	1	NA	NA	NA	unphased	0.853146853	0.853146853	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214095847	17	20505983	C	T	-	-	-	-	-	-	6	0	0	64	12	18.75	0	0	NA	0	0	NA	6.30E-16	3	2	1	1	NA	NA	NA	unphased	1.039772727	1.039772727	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214095871	17	20585536	C	T	-	-	-	-	-	-	25	0	0	43	16	37.20930233	0	0	NA	0	0	NA	3.56E-26	3	2	1	1	NA	NA	NA	unphased	2.063424947	1.031712474	2	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214097790	17	28798761	G	T	CPD	CCDS11257.1	r.?	-	-	downstream	34	0	0	74	14	18.91891892	0	0	NA	0	0	NA	2.10E-18	3	2	1	1	NA	NA	NA	unphased	1.049140049	1.049140049	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214097907	17	30218739	A	T	UTP6	CCDS11269.1	r.?	-	-	intronic	23	0	0	73	8	10.95890411	0	0	NA	2	0	0	3.93E-09	3	2	1	1	NA	NA	NA	unphased	0.607721046	0.607721046	1	0.025	0.975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214098010	17	31828443	C	T	ACCN1	CCDS42296.1	r.?	-	-	intronic	22	0	0	39	16	41.02564103	0	0	NA	0	0	NA	5.16E-27	2.076017236	2	0	0.923982764	2	1	0.076017236	unphased	1.895988423	0.985449797	1.923982764	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214098059	17	32978742	A	T	-	-	-	-	-	-	7	0	0	64	27	42.1875	0	0	NA	0	0	NA	5.28E-45	2.076017236	2	0	0.923982764	2	1	0.076017236	unphased	1.949683408	1.013358043	1.923982764	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214098937	17	44869631	C	T	WNT3	CCDS11505.1	r.?	-	-	intronic	34	0	0	52	25	48.07692308	0	0	NA	0	0	NA	1.25E-43	2.076017236	2	0	0.923982764	2	1	0.076017236	unphased	2.221861434	1.110930717	2	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214099157	17	48103791	A	T	-	-	-	-	-	-	7	0	0	42	23	54.76190476	0	0	NA	0	0	NA	4.86E-42	2.076017236	2	0	0.923982764	2	1	0.076017236	unphased	2.530805976	1.265402988	2	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214099317	17	50742083	G	T	-	-	-	-	-	-	43	0	0	45	7	15.55555556	188	0	0	164	35	21.34146341	3.00E-09	2.076017236	2	0	0.923982764	2	1	0.076017236	unphased	0.718895611	0.718895611	1	0.00375	0.99625	0	2	1	9.93E-46	1	YES	1_1	somatic	custom.pulldown.HiSeq
1352322	PD9768b	1214099392	17	52439424	C	T	-	-	-	-	-	-	44	0	0	56	23	41.07142857	0	0	NA	0	0	NA	3.22E-38	2.076017236	2	0	0.923982764	2	1	0.076017236	unphased	1.898104482	0.986549629	1.923982764	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214099625	17	56525557	G	T	HSF5	CCDS32690.1	r.?	-	-	intronic	22	0	0	49	22	44.89795918	0	0	NA	0	0	NA	1.04E-37	2.076017236	2	0	0.923982764	2	1	0.076017236	unphased	2.074946514	1.037473257	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214099808	17	59519047	C	T	-	-	-	-	-	-	40	0	0	54	22	40.74074074	0	0	NA	0	0	NA	1.60E-36	2.076017236	2	0	0.923982764	2	1	0.076017236	unphased	1.882821837	0.978606395	1.923982764	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214100610	17	71291236	C	T	CDC42EP4	CCDS11695.1	r.?	-	-	intronic	22	0	0	50	22	44	0	0	NA	0	0	NA	1.85E-37	2.076017236	2	0	0.923982764	2	1	0.076017236	unphased	2.033447584	1.016723792	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214100831	17	75232677	G	T	-	-	-	-	-	-	29	0	0	49	21	42.85714286	0	0	NA	0	0	NA	1.63E-35	2.076017236	2	0	0.923982764	2	1	0.076017236	unphased	1.980630764	0.990315382	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214100937	17	77048275	A	T	C1QTNF1	CCDS11761.1	r.?	-	-	downstream	32	0	0	50	21	42	0	0	NA	0	0	NA	2.79E-35	2.076017236	2	0	0.923982764	2	1	0.076017236	unphased	1.941018148	1.008854229	1.923982764	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214100951	17	77309341	G	T	ENSG00000167281	CCDS45805.1	r.?	-	-	intronic	12	0	0	40	17	42.5	0	0	NA	0	0	NA	6.07E-29	2.076017236	2	0	0.923982764	2	1	0.076017236	unphased	1.964125507	0.982062754	2	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214101149	17	80742150	C	T	TBCD	CCDS45818.1	r.?	-	-	intronic	14	0	0	55	23	41.81818182	0	0	NA	0	0	NA	1.91E-38	2.076017236	2	0	0.923982764	2	1	0.076017236	unphased	1.932615472	1.004486895	1.923982764	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214101479	18	3895779	C	T	-	-	-	-	-	-	45	0	0	53	24	45.28301887	0	0	NA	0	0	NA	4.04E-41	2	2	0	1	NA	NA	NA	unphased	2.058319039	1.02915952	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214102088	18	14023214	C	T	-	-	-	-	-	-	32	0	0	63	8	12.6984127	0	0	NA	0	0	NA	1.18E-09	5	4	1	1	NA	NA	NA	unphased	0.958152958	0.958152958	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214103259	18	19179453	A	T	ESCO1	CCDS32800.1	r.?	-	-	intronic	22	0	0	118	5	4.237288136	0	0	NA	0	0	NA	0.000342222	5	4	1	1	NA	NA	NA	unphased	0.31972265	0.31972265	1	0.5575	0.4425	0	1	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214103933	18	22712667	C	T	ZNF521	CCDS32806.1	r.?	-	-	intronic	30	0	0	112	6	5.357142857	0	0	NA	0	0	NA	2.38E-05	5	4	1	1	NA	NA	NA	unphased	0.404220779	0.404220779	1	0.24	0.76	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214104386	18	25583177	C	T	CDH2	CCDS11891.1	r.?	-	-	intronic	37	0	0	99	10	10.1010101	0	0	NA	0	0	NA	1.01E-10	5	4	1	1	NA	NA	NA	unphased	0.762167126	0.762167126	1	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214104392	18	25664901	C	T	CDH2	CCDS11891.1	r.?	-	-	intronic	38	0	0	121	23	19.00826446	0	0	NA	0	0	NA	2.47E-29	5	4	1	1	NA	NA	NA	unphased	1.434259955	0.717129977	2	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214104468	18	26150360	A	T	-	-	-	-	-	-	32	0	0	112	15	13.39285714	0	0	NA	0	0	NA	3.04E-17	5	4	1	1	NA	NA	NA	unphased	1.010551948	1.010551948	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214104514	18	26389839	C	T	-	-	-	-	-	-	35	0	0	108	21	19.44444444	0	0	NA	0	0	NA	3.87E-27	5	4	1	1	NA	NA	NA	unphased	1.467171717	0.733585859	2	0.005	0.995	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214104546	18	26597984	C	T	-	-	-	-	-	-	55	0	0	116	64	55.17241379	0	0	NA	0	0	NA	1.39E-114	5	4	1	1	NA	NA	NA	unphased	4.163009404	1.040752351	4	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214104571	18	26739554	A	T	-	-	-	-	-	-	46	0	0	95	11	11.57894737	0	0	NA	0	0	NA	2.59E-12	5	4	1	1	NA	NA	NA	unphased	0.873684211	0.873684211	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214104732	18	27637024	C	T	-	-	-	-	-	-	46	0	0	118	11	9.322033898	0	0	NA	0	0	NA	2.86E-11	5	4	1	1	NA	NA	NA	unphased	0.703389831	0.703389831	1	0.00875	0.99125	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214105614	18	33804790	G	T	MOCOS	CCDS11919.1	r.?	-	-	intronic	34	0	0	94	9	9.574468085	0	0	NA	0	0	NA	1.42E-09	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	0.751717286	0.751717286	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214105763	18	35113397	G	T	CELF4	CCDS32818.1	r.?	-	-	intronic	20	0	0	95	12	12.63157895	0	0	NA	0	0	NA	9.09E-14	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	0.991739297	0.991739297	1	0.00125	0.99625	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214105783	18	35258451	G	T	-	-	-	-	-	-	28	0	0	105	9	8.571428571	0	0	NA	0	0	NA	3.81E-09	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	0.672965952	0.672965952	1	0.01125	0.98875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214105784	18	35258452	A	T	-	-	-	-	-	-	29	0	0	100	8	8	0	0	NA	0	0	NA	4.83E-08	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	0.628101555	0.628101555	1	0.00875	0.99125	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214106178	18	38418113	A	T	-	-	-	-	-	-	30	0	0	99	26	26.26262626	0	0	NA	0	0	NA	5.42E-37	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	2.061949549	1.030974774	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214106202	18	38615767	C	T	-	-	-	-	-	-	31	0	0	107	11	10.28037383	0	0	NA	0	0	NA	9.74E-12	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	0.807139849	0.807139849	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214106239	18	38945082	C	T	-	-	-	-	-	-	29	0	0	126	61	48.41269841	0	0	NA	0	0	NA	1.78E-104	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	3.801011393	1.028917415	3.69418511	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214106289	18	39315291	C	T	-	-	-	-	-	-	37	0	0	85	12	14.11764706	0	0	NA	0	0	NA	2.29E-14	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	1.108414509	1.108414509	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214106444	18	40637044	G	T	RIT2	CCDS11921.1	r.?	-	-	intronic	26	0	0	70	10	14.28571429	0	0	NA	0	0	NA	2.95E-12	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	1.121609919	1.121609919	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214106446	18	40676177	C	T	RIT2	CCDS11921.1	r.?	-	-	intronic	27	0	0	96	53	55.20833333	0	0	NA	0	0	NA	3.45E-95	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	4.334555001	1.08363875	4	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214106873	18	44022860	C	T	RNF165	CCDS32823.1	r.?	-	-	intronic	28	0	0	104	11	10.57692308	0	0	NA	0	0	NA	7.11E-12	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	0.830422729	0.830422729	1	0.00125	0.9975	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214107078	18	45224323	C	T	-	-	-	-	-	-	38	0	0	91	20	21.97802198	0	0	NA	0	0	NA	4.44E-27	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	1.725553722	1.018515457	1.69418511	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214107304	18	46750707	G	T	DYM	CCDS11937.1	r.?	-	-	intronic	27	0	0	114	10	8.771929825	0	0	NA	0	0	NA	4.14E-10	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	0.688707845	0.688707845	1	0.00875	0.99125	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214107338	18	46994326	C	T	-	-	-	-	-	-	20	0	0	110	9	8.181818182	0	0	NA	0	0	NA	5.76E-09	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	0.64237659	0.64237659	1	0.00875	0.99125	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214108123	18	51944842	C	T	-	-	-	-	-	-	28	0	0	87	9	10.34482759	0	0	NA	0	0	NA	7.05E-10	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	0.812200286	0.812200286	1	0.00625	0.99375	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214108249	18	53047543	C	T	TCF4	CCDS42438.1	r.?	-	-	intronic	31	0	0	92	9	9.782608696	0	0	NA	0	0	NA	1.17E-09	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	0.768058967	0.768058967	1	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214108659	18	55942903	C	T	NEDD4L	CCDS45872.1	r.?	-	-	intronic	16	0	0	106	18	16.98113208	0	0	NA	0	0	NA	2.43E-22	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	1.333234432	1.333234432	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214109058	18	58706599	C	T	-	-	-	-	-	-	32	0	0	79	12	15.18987342	0	0	NA	0	0	NA	9.17E-15	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	1.192597889	1.192597889	1	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214109066	18	58774312	C	T	-	-	-	-	-	-	33	0	0	102	7	6.862745098	0	0	NA	0	0	NA	9.53E-07	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	0.538812608	0.538812608	1	0.035	0.965	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214109184	18	59798884	A	T	PIGN	CCDS45879.1	r.?	-	-	intronic	29	0	0	100	10	10	0	0	NA	0	0	NA	1.12E-10	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	0.785126944	0.785126944	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214109304	18	60459902	G	T	PHLPP1	CCDS45881.1	r.?	-	-	intronic	19	0	0	93	11	11.82795699	0	0	NA	0	0	NA	2.04E-12	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	0.928644772	0.928644772	1	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214109344	18	60729731	C	T	-	-	-	-	-	-	11	0	0	83	16	19.27710843	0	0	NA	0	0	NA	5.75E-21	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	1.513497722	1.513497722	1	0	0.995	0.005	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214109499	18	61627804	A	T	HMSD	CCDS42441.1	r.?	-	-	downstream	41	0	0	122	5	4.098360656	0	0	NA	0	0	NA	0.000398828	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	0.321773338	1.052183357	0.30581489	0.0025	0.99625	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214109542	18	62107123	C	T	-	-	-	-	-	-	6	0	0	83	34	40.96385542	0	0	NA	0	0	NA	1.01E-55	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	3.21618266	1.072060887	3	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214109591	18	62454631	G	T	-	-	-	-	-	-	46	0	0	92	13	14.13043478	0	0	NA	0	0	NA	1.89E-15	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	1.109418507	1.109418507	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214110151	18	66239055	A	T	-	-	-	-	-	-	41	0	0	123	8	6.504065041	0	0	NA	0	0	NA	2.41E-07	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	0.510651671	0.510651671	1	0.06125	0.93875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214110573	18	69117092	G	T	-	-	-	-	-	-	33	0	0	104	24	23.07692308	0	0	NA	0	0	NA	9.41E-33	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	1.811831408	1.06944123	1.69418511	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214110769	18	70440871	G	T	NETO1	CCDS12000.1	r.?	-	-	intronic	30	0	0	90	5	5.555555556	0	0	NA	0	0	NA	9.65E-05	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	0.436181635	1.426292995	0.30581489	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214110817	18	70831037	C	T	-	-	-	-	-	-	25	0	0	93	16	17.20430108	0	0	NA	0	0	NA	4.04E-20	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	1.350756032	1.350756032	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214110821	18	70849740	A	T	-	-	-	-	-	-	25	0	0	109	21	19.26605505	0	0	NA	0	0	NA	4.77E-27	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	1.512629891	0.892836256	1.69418511	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214111036	18	72433109	C	T	ZNF407	CCDS45885.1	r.?	-	-	intronic	48	0	0	114	61	53.50877193	0	0	NA	0	0	NA	3.91E-108	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	4.201117856	1.050279464	4	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214111124	18	72969040	C	T	TSHZ1	CCDS12009.1	r.?	-	-	intronic	39	0	0	94	11	11.70212766	0	0	NA	0	0	NA	2.30E-12	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	0.918765572	0.918765572	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214111198	18	73516168	C	T	-	-	-	-	-	-	39	0	0	105	11	10.47619048	0	0	NA	0	0	NA	7.90E-12	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	0.822513941	0.822513941	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214111473	18	75101618	C	T	-	-	-	-	-	-	33	0	0	96	12	12.5	0	0	NA	0	0	NA	1.03E-13	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	0.981408679	0.981408679	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214111523	18	75353034	C	T	-	-	-	-	-	-	46	0	0	110	26	23.63636364	0	0	NA	0	0	NA	1.18E-35	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	1.855754594	0.927877297	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214111541	18	75463674	C	T	-	-	-	-	-	-	24	0	0	95	10	10.52631579	0	0	NA	0	0	NA	6.70E-11	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	0.826449414	0.826449414	1	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214111543	18	75481929	A	T	-	-	-	-	-	-	14	0	0	78	11	14.1025641	0	0	NA	0	0	NA	2.79E-13	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	1.107230305	1.107230305	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214111563	18	75637310	G	T	-	-	-	-	-	-	28	0	0	95	8	8.421052632	0	0	NA	0	0	NA	3.23E-08	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	0.661159531	0.661159531	1	0.0125	0.9875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214111640	18	76155393	C	T	-	-	-	-	-	-	21	0	0	113	25	22.12389381	0	0	NA	0	0	NA	1.51E-33	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	1.737006512	1.025275516	1.69418511	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214111648	18	76187129	C	T	-	-	-	-	-	-	14	0	0	108	16	14.81481481	0	0	NA	0	0	NA	5.03E-19	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	1.163151027	1.163151027	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214111896	18	77066207	G	T	ATP9B	CCDS12014.1	r.?	-	-	intronic	30	0	0	100	20	20	0	0	NA	0	0	NA	3.49E-26	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	1.570253887	0.926849066	1.69418511	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214112057	18	77717585	C	T	-	-	-	-	-	-	17	0	0	92	10	10.86956522	0	0	NA	0	0	NA	4.85E-11	5.30581489	4	1	0.69418511	4	2	0.30581489	unphased	0.853398852	0.853398852	1	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214112551	19	7138540	C	T	INSR	CCDS12176.1	r.?	-	-	intronic	27	0	0	52	18	34.61538462	0	0	NA	0	0	NA	1.39E-28	5	4	1	1	NA	NA	NA	unphased	2.611888112	0.870629371	3	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214112877	19	10132882	C	T	RDH8	CCDS12223.1	r.1642c>u	c.?	p.?	3'UTR variant	24	0	0	79	11	13.92405063	2	0	0	0	0	NA	3.23E-13	6	3	3	1	NA	NA	NA	unphased	1.189873418	1.189873418	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214113451	19	14845621	A	T	EMR2	CCDS32935.1	r.4355u>a	c.?	p.?	3'UTR variant	28	0	0	81	13	16.04938272	0	0	NA	0	0	NA	3.34E-16	6	3	3	1	NA	NA	NA	unphased	1.371492705	1.371492705	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214113476	19	15029479	C	T	-	-	-	-	-	-	24	0	0	66	18	27.27272727	0	0	NA	0	0	NA	2.08E-26	6	3	3	1	NA	NA	NA	unphased	2.330578512	1.165289256	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214113477	19	15033637	C	T	-	-	-	-	-	-	34	0	0	79	25	31.64556962	0	0	NA	0	0	NA	5.74E-38	6	3	3	1	NA	NA	NA	unphased	2.704257768	0.901419256	3	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214113783	19	17252073	C	T	MYO9B	CCDS46010.1	r.?	-	-	intronic	15	0	0	71	16	22.53521127	0	0	NA	0	0	NA	3.77E-22	4.455748631	2	2	0.544251369	3	2	0.455748631	unphased	1.577735927	1.08379695	1.455748631	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214114342	19	21427096	C	T	-	-	-	-	-	-	22	0	0	80	6	7.5	1	0	0	6	0	0	3.42E-06	4.455748631	2	2	0.544251369	3	2	0.455748631	unphased	0.525090238	1.152148799	0.455748631	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214114476	19	22226096	C	T	-	-	-	-	-	-	27	0	0	85	15	17.64705882	0	0	NA	0	0	NA	3.95E-19	4.455748631	2	2	0.544251369	3	2	0.455748631	unphased	1.235506443	1.235506443	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214114492	19	22270196	G	T	ZNF257	CCDS46030.1	r.?	-	-	intronic	32	0	0	91	7	7.692307692	133	0	0	239	25	10.46025105	4.38E-07	4.455748631	2	2	0.544251369	3	2	0.455748631	unphased	0.538554091	1.181691076	0.455748631	0	1	0	2	1	5.39E-25	1	YES	1_1	somatic	custom.pulldown.HiSeq
1352322	PD9768b	1214114535	19	22464241	G	T	-	-	-	-	-	-	30	0	0	51	5	9.803921569	0	0	NA	0	0	NA	6.06E-06	4.455748631	2	2	0.544251369	3	2	0.455748631	unphased	0.686392468	0.686392468	1	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214114596	19	22822724	C	T	ZNF492	CCDS46032.1	r.?	-	-	intronic	29	0	0	77	9	11.68831169	0	0	NA	0	0	NA	2.32E-10	4.455748631	2	2	0.544251369	3	2	0.455748631	unphased	0.818322449	0.818322449	1	0.0075	0.9925	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214114693	19	23480031	C	T	-	-	-	-	-	-	37	0	0	72	9	12.5	0	0	NA	0	0	NA	1.25E-10	4.455748631	2	2	0.544251369	3	2	0.455748631	unphased	0.875150397	0.875150397	1	0.00125	0.9975	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214115566	19	29240713	C	T	-	-	-	-	-	-	16	0	0	65	23	35.38461538	1	0	0	0	0	NA	2.21E-36	5	3	2	1	NA	NA	NA	unphased	2.66993007	0.88997669	3	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214115594	19	29468154	G	T	-	-	-	-	-	-	27	0	0	65	17	26.15384615	0	0	NA	0	0	NA	1.14E-24	5	3	2	1	NA	NA	NA	unphased	1.973426573	0.986713287	2	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214115651	19	30084723	C	T	-	-	-	-	-	-	16	0	0	70	12	17.14285714	0	0	NA	0	0	NA	1.99E-15	5	3	2	1	NA	NA	NA	unphased	1.293506494	1.293506494	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214115770	19	31181348	C	T	-	-	-	-	-	-	49	0	0	89	41	46.06741573	0	0	NA	0	0	NA	1.43E-69	5	3	2	1	NA	NA	NA	unphased	3.475995914	1.158665305	3	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214115818	19	31595373	C	T	-	-	-	-	-	-	8	0	0	82	24	29.26829268	0	0	NA	0	0	NA	1.47E-35	5	3	2	1	NA	NA	NA	unphased	2.208425721	1.10421286	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214115834	19	31711968	C	T	-	-	-	-	-	-	28	0	0	85	30	35.29411765	0	0	NA	0	0	NA	5.97E-47	5	3	2	1	NA	NA	NA	unphased	2.663101604	0.887700535	3	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214115870	19	32116069	G	T	ENSG00000232700	ENST00000441786	r.?	-	-	intronic	19	0	0	66	6	9.090909091	0	0	NA	0	0	NA	1.10E-06	5	3	2	1	NA	NA	NA	unphased	0.685950413	0.685950413	1	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214115934	19	32757116	G	T	-	-	-	-	-	-	34	0	0	55	14	25.45454545	0	0	NA	0	0	NA	2.19E-20	5	3	2	1	NA	NA	NA	unphased	1.920661157	0.960330579	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214116016	19	33260929	C	T	TDRD12	CCDS46038.1	r.?	-	-	intronic	13	0	0	79	11	13.92405063	0	0	NA	0	0	NA	3.23E-13	5	3	2	1	NA	NA	NA	unphased	1.050632911	1.050632911	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214116113	19	33871960	G	T	CEBPG	CCDS12432.1	r.2104g>u	c.?	p.?	3'UTR variant	34	0	0	92	39	42.39130435	0	0	NA	0	0	NA	2.00E-64	5	3	2	1	NA	NA	NA	unphased	3.198616601	1.066205534	3	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214116145	19	34316962	C	T	-	-	-	-	-	-	27	0	0	72	34	47.22222222	0	0	NA	0	0	NA	1.92E-58	5	3	2	1	NA	NA	NA	unphased	3.563131313	1.187710438	3	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214116358	19	36502714	C	T	CLIP3	CCDS12486.1	r.?	-	-	downstream	14	0	0	58	19	32.75862069	0	0	NA	0	0	NA	1.50E-29	3	3	0	1	NA	NA	NA	unphased	1.81661442	0.90830721	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214116471	19	37523768	G	T	-	-	-	-	-	-	26	0	0	73	13	17.80821918	0	0	NA	0	0	NA	7.97E-17	3	3	0	1	NA	NA	NA	unphased	0.9875467	0.9875467	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214116776	19	40551858	G	T	ZNF780B	CCDS46077.1	r.?	-	-	intronic	31	0	0	79	17	21.51898734	0	0	NA	0	0	NA	4.55E-23	3	3	0	1	NA	NA	NA	unphased	1.193325662	1.193325662	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214117057	19	42940317	C	T	CXCL17	CCDS12608.1	r.?	-	-	intronic	41	0	0	88	11	12.5	0	0	NA	0	0	NA	1.10E-12	3	3	0	1	NA	NA	NA	unphased	0.693181818	0.693181818	1	0.00875	0.99125	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214117504	19	45236336	A	T	-	-	-	-	-	-	21	0	0	133	79	59.39849624	0	0	NA	0	0	NA	9.12E-145	11.44607427	11	0	0.553925734	11	1	0.446074266	unphased	8.310757715	0.971572349	8.553925734	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214117636	19	45765205	G	T	MARK4	CCDS12658.1	r.?	-	-	intronic	14	0	0	133	7	5.263157895	0	0	NA	0	0	NA	5.61E-06	11.44607427	11	0	0.553925734	11	1	0.446074266	unphased	0.736396253	0.736396253	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214119429	19	58123470	A	T	ZNF134	CCDS42638.1	r.?	-	-	upstream	22	0	0	72	21	29.16666667	0	0	NA	0	0	NA	2.89E-31	4.211727166	4	0	0.788272834	4	1	0.211727166	unphased	1.970844666	0.985422333	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214119593	2	590461	C	T	-	-	-	-	-	-	39	0	0	80	19	23.75	0	0	NA	0	0	NA	1.65E-26	4	2	2	1	NA	NA	NA	unphased	1.554545455	0.777272727	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214119691	2	1136791	C	T	SNTG2	CCDS46220.1	r.?	-	-	intronic	45	0	0	78	23	29.48717949	0	0	NA	0	0	NA	3.16E-34	4	2	2	1	NA	NA	NA	unphased	1.93006993	0.965034965	2	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214119884	2	2600055	C	T	-	-	-	-	-	-	22	0	0	76	19	25	0	0	NA	0	0	NA	5.56E-27	4	2	2	1	NA	NA	NA	unphased	1.636363636	0.818181818	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214119898	2	2794655	G	T	-	-	-	-	-	-	20	0	0	74	7	9.459459459	0	0	NA	0	0	NA	1.05E-07	4	2	2	1	NA	NA	NA	unphased	0.619164619	0.619164619	1	0.00875	0.99125	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214119917	2	3017993	C	T	-	-	-	-	-	-	38	0	0	60	17	28.33333333	0	0	NA	0	0	NA	2.41E-25	4	2	2	1	NA	NA	NA	unphased	1.854545455	0.927272727	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214120216	2	6275976	C	T	-	-	-	-	-	-	21	0	0	66	23	34.84848485	0	0	NA	0	0	NA	3.38E-36	4	2	2	1	NA	NA	NA	unphased	2.280991736	1.140495868	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214120296	2	7106306	A	T	RNF144A	CCDS1657.1	r.?	-	-	intronic	34	0	0	85	28	32.94117647	0	0	NA	0	0	NA	6.45E-43	4	2	2	1	NA	NA	NA	unphased	2.156149733	1.078074866	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214120647	2	10956398	G	T	PDIA6	CCDS1675.1	r.?	-	-	upstream	26	0	0	101	26	25.74257426	0	0	NA	0	0	NA	9.78E-37	4	2	2	1	NA	NA	NA	unphased	1.684968497	0.842484248	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214121098	2	15970038	C	T	-	-	-	-	-	-	24	0	0	71	15	21.12676056	0	0	NA	0	0	NA	2.15E-20	4	2	2	1	NA	NA	NA	unphased	1.38284251	1.38284251	1	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214121376	2	20145068	A	T	WDR35	CCDS33152.1	r.?	-	-	intronic	34	0	0	84	29	34.52380952	0	0	NA	0	0	NA	4.21E-45	4	2	2	1	NA	NA	NA	unphased	2.25974026	1.12987013	2	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214121446	2	21032193	A	T	-	-	-	-	-	-	34	0	0	77	33	42.85714286	0	0	NA	0	0	NA	5.91E-55	4	2	2	1	NA	NA	NA	unphased	2.805194805	1.402597403	2	0	0.99625	0.00375	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214121492	2	21610904	G	T	-	-	-	-	-	-	34	0	0	80	22	27.5	0	0	NA	0	0	NA	4.89E-32	4	2	2	1	NA	NA	NA	unphased	1.8	0.9	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214121549	2	22441024	C	T	-	-	-	-	-	-	32	1	3.125	83	27	32.53012048	0	0	NA	0	0	NA	2.90E-41	4	2	2	1	NA	NA	NA	unphased	2.12924425	1.064622125	2	0	1	0	2	0.14819814	1	1	NA	NA	NA	NA
1352322	PD9768b	1214121975	2	26663427	G	T	C2orf39	CCDS1723.1	r.?	-	-	intronic	33	0	0	69	19	27.53623188	0	0	NA	0	0	NA	6.95E-28	4	2	2	1	NA	NA	NA	unphased	1.802371542	0.901185771	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214122084	2	27526128	G	T	TRIM54	CCDS1745.2	r.?	-	-	intronic	14	0	0	67	18	26.86567164	0	0	NA	0	0	NA	2.83E-26	4	2	2	1	NA	NA	NA	unphased	1.758480326	0.879240163	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214122085	2	27526129	A	T	TRIM54	CCDS1745.2	r.?	-	-	intronic	14	0	0	67	18	26.86567164	0	0	NA	0	0	NA	2.83E-26	4	2	2	1	NA	NA	NA	unphased	1.758480326	0.879240163	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214122126	2	27978822	C	T	-	-	-	-	-	-	16	0	0	67	18	26.86567164	0	0	NA	2	0	0	2.83E-26	4	2	2	1	NA	NA	NA	unphased	1.758480326	0.879240163	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214122201	2	28756252	C	T	PLB1	CCDS33168.1	r.?	-	-	intronic	32	0	0	78	8	10.25641026	0	0	NA	0	0	NA	6.71E-09	4	2	2	1	NA	NA	NA	unphased	0.671328671	0.671328671	1	0.00875	0.99125	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214122328	2	30504928	G	T	LBH	ENST00000404397	r.?	-	-	intronic	7	0	0	77	15	19.48051948	0	0	NA	0	0	NA	8.05E-20	3	2	1	1	NA	NA	NA	unphased	1.080283353	1.080283353	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214122364	2	31090097	C	T	-	-	-	-	-	-	35	0	0	61	24	39.3442623	0	0	NA	0	0	NA	2.97E-39	3	2	1	1	NA	NA	NA	unphased	2.181818182	1.090909091	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214122366	2	31210080	C	T	GALNT14	CCDS1773.2	r.?	-	-	intronic	32	0	0	59	10	16.94915254	0	0	NA	0	0	NA	4.91E-13	3	2	1	1	NA	NA	NA	unphased	0.93990755	0.93990755	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214122542	2	33745617	C	T	RASGRP3	CCDS46256.1	r.977-3c>u	c.237-3C>T	p.?	splice region	32	1	3.125	76	26	34.21052632	174	0	0	213	74	34.74178404	1.80E-40	3	2	1	1	NA	NA	NA	unphased	1.897129187	0.948564593	2	0	1	0	2	0.14819814	8.44E-113	1	YES	1_1	somatic	custom.pulldown.HiSeq
1352322	PD9768b	1214122686	2	35745053	A	T	-	-	-	-	-	-	47	0	0	53	5	9.433962264	0	0	NA	0	0	NA	7.34E-06	3	2	1	1	NA	NA	NA	unphased	0.523156089	0.523156089	1	0.025	0.975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214123034	2	39192651	C	T	ENSG00000214694	CCDS46263.1	r.?	-	-	intronic	31	0	0	90	16	17.77777778	0	0	NA	0	0	NA	2.31E-20	3	2	1	1	NA	NA	NA	unphased	0.985858586	0.985858586	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214123759	2	50885023	C	T	NRXN1	CCDS46282.1	r.?	-	-	intronic	33	0	0	55	6	10.90909091	0	0	NA	0	0	NA	3.67E-07	3	2	1	1	NA	NA	NA	unphased	0.604958678	0.604958678	1	0.0125	0.9875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214124144	2	57240513	C	T	-	-	-	-	-	-	23	0	0	69	22	31.88405797	0	0	NA	0	0	NA	1.12E-33	3	2	1	1	NA	NA	NA	unphased	1.768115942	0.884057971	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214124147	2	57301217	A	T	-	-	-	-	-	-	27	0	0	53	21	39.62264151	0	0	NA	0	0	NA	1.30E-34	3	2	1	1	NA	NA	NA	unphased	2.197255575	1.098627787	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214124236	2	58910717	A	T	-	-	-	-	-	-	34	0	0	58	13	22.4137931	0	0	NA	0	0	NA	3.12E-18	3	2	1	1	NA	NA	NA	unphased	1.242946708	1.242946708	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214124264	2	59602203	C	T	-	-	-	-	-	-	32	0	0	68	21	30.88235294	0	0	NA	0	0	NA	7.15E-32	3	2	1	1	NA	NA	NA	unphased	1.712566845	0.856283422	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214124419	2	61826404	G	T	-	-	-	-	-	-	30	0	0	65	28	43.07692308	0	0	NA	0	0	NA	6.12E-47	3	2	1	1	NA	NA	NA	unphased	2.388811189	1.194405594	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214124532	2	63718812	C	T	C2orf86	CCDS42688.1	r.?	-	-	intronic	37	0	0	64	13	20.3125	0	0	NA	0	0	NA	1.26E-17	3	2	1	1	NA	NA	NA	unphased	1.126420455	1.126420455	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214124708	2	66298000	C	T	-	-	-	-	-	-	29	0	0	70	18	25.71428571	0	0	NA	0	0	NA	6.91E-26	3	2	1	1	NA	NA	NA	unphased	1.425974026	1.425974026	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214124713	2	66487906	C	T	-	-	-	-	-	-	24	0	0	61	21	34.42622951	0	0	NA	0	0	NA	4.80E-33	3	2	1	1	NA	NA	NA	unphased	1.909090909	0.954545455	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214125162	2	73668307	G	T	ALMS1	CCDS42697.1	r.?	-	-	intronic	28	0	0	54	13	24.07407407	0	0	NA	0	0	NA	1.12E-18	3	2	1	1	NA	NA	NA	unphased	1.335016835	1.335016835	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214125284	2	75732242	A	T	FAM176A	CCDS1959.1	r.?	-	-	intronic	38	0	0	46	8	17.39130435	0	0	NA	0	0	NA	8.61E-11	3	2	1	1	NA	NA	NA	unphased	0.964426877	0.964426877	1	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214125286	2	75856587	A	T	-	-	-	-	-	-	28	0	0	68	23	33.82352941	0	0	NA	0	0	NA	7.70E-36	3	2	1	1	NA	NA	NA	unphased	1.875668449	0.937834225	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214125346	2	76777608	G	T	-	-	-	-	-	-	28	0	0	65	13	20	0	0	NA	0	0	NA	1.57E-17	3	2	1	1	NA	NA	NA	unphased	1.109090909	1.109090909	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214125353	2	76918637	G	T	-	-	-	-	-	-	33	0	0	61	12	19.67213115	0	0	NA	0	0	NA	3.39E-16	3	2	1	1	NA	NA	NA	unphased	1.090909091	1.090909091	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214125444	2	79034468	G	T	-	-	-	-	-	-	38	0	0	74	20	27.02702703	0	0	NA	0	0	NA	4.34E-29	3	2	1	1	NA	NA	NA	unphased	1.498771499	0.749385749	2	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214125482	2	79485104	G	T	CTNNA2	CCDS42703.2	r.?	-	-	intronic	17	0	0	46	10	21.73913043	0	0	NA	0	0	NA	3.38E-14	3	2	1	1	NA	NA	NA	unphased	1.205533597	1.205533597	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214125495	2	79632225	C	T	CTNNA2	CCDS42703.2	r.?	-	-	intronic	40	0	0	56	5	8.928571429	0	0	NA	0	0	NA	9.65E-06	3	2	1	1	NA	NA	NA	unphased	0.49512987	0.49512987	1	0.03875	0.96125	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214125498	2	79715242	C	T	CTNNA2	CCDS42703.2	r.?	-	-	intronic	29	0	0	58	20	34.48275862	0	0	NA	0	0	NA	1.47E-31	3	2	1	1	NA	NA	NA	unphased	1.912225705	0.956112853	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214125499	2	79726716	C	T	CTNNA2	CCDS42703.2	r.?	-	-	intronic	36	0	0	73	17	23.28767123	0	0	NA	0	0	NA	1.03E-23	3	2	1	1	NA	NA	NA	unphased	1.291407223	1.291407223	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214125547	2	80476597	C	T	CTNNA2	CCDS42703.2	r.?	-	-	intronic	37	0	0	66	11	16.66666667	0	0	NA	0	0	NA	4.07E-14	3	2	1	1	NA	NA	NA	unphased	0.924242424	0.924242424	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214125599	2	81440306	A	T	-	-	-	-	-	-	24	0	0	63	22	34.92063492	0	0	NA	0	0	NA	1.03E-34	3	2	1	1	NA	NA	NA	unphased	1.936507937	0.968253968	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214125664	2	82631225	G	T	-	-	-	-	-	-	24	0	0	67	9	13.43283582	2	0	0	1	0	0	6.43E-11	3	2	1	1	NA	NA	NA	unphased	0.744911805	0.744911805	1	0.00625	0.99375	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214125679	2	82987726	G	T	-	-	-	-	-	-	35	0	0	32	10	31.25	0	0	NA	0	0	NA	5.70E-16	3	2	1	1	NA	NA	NA	unphased	1.732954545	0.866477273	2	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214129020	2	99120219	C	T	INPP4A	CCDS46369.1	r.?	-	-	intronic	25	0	0	59	15	25.42372881	0	0	NA	0	0	NA	9.90E-22	3	2	1	1	NA	NA	NA	unphased	1.409861325	1.409861325	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214129154	2	101177929	A	T	PDCL3	CCDS33261.1	r.?	-	-	upstream	28	0	0	62	7	11.29032258	0	0	NA	0	0	NA	3.02E-08	3	2	1	1	NA	NA	NA	unphased	0.626099707	0.626099707	1	0.0125	0.9875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214129363	2	104683566	C	T	-	-	-	-	-	-	35	0	0	58	13	22.4137931	0	0	NA	0	0	NA	3.12E-18	3	2	1	1	NA	NA	NA	unphased	1.242946708	1.242946708	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214129366	2	104690249	C	T	-	-	-	-	-	-	28	0	0	77	18	23.37662338	0	0	NA	0	0	NA	4.71E-25	3	2	1	1	NA	NA	NA	unphased	1.296340024	1.296340024	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214129367	2	104690279	A	T	-	-	-	-	-	-	26	0	0	72	15	20.83333333	0	0	NA	0	0	NA	2.70E-20	3	2	1	1	NA	NA	NA	unphased	1.15530303	1.15530303	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214129370	2	104747723	C	T	-	-	-	-	-	-	26	0	0	56	14	25	0	0	NA	0	0	NA	2.91E-20	3	2	1	1	NA	NA	NA	unphased	1.386363636	1.386363636	1	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214129425	2	105786764	C	T	-	-	-	-	-	-	20	0	0	63	12	19.04761905	0	0	NA	0	0	NA	5.15E-16	3	2	1	1	NA	NA	NA	unphased	1.056277056	1.056277056	1	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214129436	2	106014205	C	T	FHL2	CCDS2070.1	r.?	-	-	intronic	32	0	0	56	10	17.85714286	0	0	NA	0	0	NA	2.82E-13	3	2	1	1	NA	NA	NA	unphased	0.99025974	0.99025974	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214129832	2	111988229	G	T	-	-	-	-	-	-	41	0	0	69	29	42.02898551	0	0	NA	0	0	NA	3.64E-48	3	2	1	1	NA	NA	NA	unphased	2.330698287	1.165349144	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214130205	2	115964254	G	T	DPP10	CCDS46400.1	r.?	-	-	intronic	35	0	0	65	12	18.46153846	0	0	NA	0	0	NA	7.70E-16	3	2	1	1	NA	NA	NA	unphased	1.023776224	1.023776224	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214130210	2	116087583	C	T	DPP10	CCDS46400.1	r.?	-	-	intronic	32	0	0	58	7	12.06896552	0	0	NA	0	0	NA	1.88E-08	3	2	1	1	NA	NA	NA	unphased	0.669278997	0.669278997	1	0.0075	0.9925	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214130243	2	116392263	C	T	DPP10	CCDS46400.1	r.?	-	-	intronic	20	0	0	57	25	43.85964912	0	0	NA	0	0	NA	2.54E-42	3	2	1	1	NA	NA	NA	unphased	2.432216906	1.216108453	2	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214130253	2	116542450	A	T	DPP10	CCDS46400.1	r.?	-	-	intronic	31	0	0	64	9	14.0625	0	0	NA	0	0	NA	4.20E-11	3	2	1	1	NA	NA	NA	unphased	0.779829545	0.779829545	1	0.00375	0.99625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214130261	2	116714446	A	T	-	-	-	-	-	-	24	0	0	61	8	13.1147541	0	0	NA	0	0	NA	9.09E-10	3	2	1	1	NA	NA	NA	unphased	0.727272727	0.727272727	1	0.00375	0.99625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214130267	2	116781124	C	T	-	-	-	-	-	-	27	0	0	71	23	32.3943662	0	0	NA	0	0	NA	2.51E-35	3	2	1	1	NA	NA	NA	unphased	1.796414853	0.898207426	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214130270	2	116824933	G	T	-	-	-	-	-	-	22	0	0	61	17	27.86885246	0	0	NA	0	0	NA	3.33E-25	3	2	1	1	NA	NA	NA	unphased	1.545454545	0.772727273	2	0.00375	0.99625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214130304	2	117519164	A	T	-	-	-	-	-	-	38	0	0	57	16	28.07017544	0	0	NA	0	0	NA	7.28E-24	3	2	1	1	NA	NA	NA	unphased	1.55661882	0.77830941	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214130354	2	118205415	C	T	-	-	-	-	-	-	34	0	0	69	9	13.04347826	0	0	NA	0	0	NA	8.45E-11	3	2	1	1	NA	NA	NA	unphased	0.723320158	0.723320158	1	0.00375	0.99625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214130427	2	119171603	G	T	-	-	-	-	-	-	18	0	0	57	7	12.28070175	0	0	NA	0	0	NA	1.66E-08	3	2	1	1	NA	NA	NA	unphased	0.681020734	0.681020734	1	0.00375	0.995	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214130508	2	120166563	C	T	-	-	-	-	-	-	21	1	4.761904762	79	34	43.03797468	0	0	NA	0	0	NA	1.18E-56	4	3	1	1	NA	NA	NA	unphased	2.81703107	0.939010357	3	0	1	0	2	0.099912572	1	1	NA	NA	NA	NA
1352322	PD9768b	1214130795	2	124504014	G	T	-	-	-	-	-	-	32	0	0	61	14	22.95081967	0	0	NA	0	0	NA	1.10E-19	3	2	1	1	NA	NA	NA	unphased	1.272727273	1.272727273	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214131186	2	130054494	G	T	-	-	-	-	-	-	25	0	0	67	15	22.3880597	0	0	NA	0	0	NA	8.27E-21	3	2	1	1	NA	NA	NA	unphased	1.241519674	1.241519674	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214131191	2	130081389	C	T	-	-	-	-	-	-	33	0	0	51	9	17.64705882	0	0	NA	0	0	NA	4.92E-12	3	2	1	1	NA	NA	NA	unphased	0.978609626	0.978609626	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214132738	2	135715635	C	T	CCNT2	CCDS2174.1	r.5640c>u	c.?	p.?	3'UTR variant	35	0	0	83	17	20.48192771	0	0	NA	0	0	NA	1.14E-22	3	2	1	1	NA	NA	NA	unphased	1.135815991	1.135815991	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214132892	2	138379006	C	T	THSD7B	ENST00000409968	r.?	-	-	intronic	38	0	0	70	28	40	0	0	NA	0	0	NA	8.50E-46	3	2	1	1	NA	NA	NA	unphased	2.218181818	1.109090909	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214133033	2	140826012	A	T	-	-	-	-	-	-	29	0	0	51	9	17.64705882	0	0	NA	0	0	NA	4.92E-12	3	2	1	1	NA	NA	NA	unphased	0.978609626	0.978609626	1	0.0025	0.99625	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214133071	2	141429385	G	T	LRP1B	CCDS2182.1	r.?	-	-	intronic	23	0	0	45	6	13.33333333	0	0	NA	0	0	NA	1.08E-07	3	2	1	1	NA	NA	NA	unphased	0.739393939	0.739393939	1	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214133087	2	141606103	A	T	LRP1B	CCDS2182.1	r.?	-	-	intronic	43	0	0	53	18	33.96226415	43	0	0	26	3	11.53846154	2.09E-28	3	2	1	1	NA	NA	NA	unphased	1.883361921	0.941680961	2	0.00125	0.99875	0	2	1	0.000298167	1	NA	NA	NA	NA
1352322	PD9768b	1214133194	2	143193380	G	T	-	-	-	-	-	-	34	0	0	54	9	16.66666667	0	0	NA	0	0	NA	8.48E-12	3	2	1	1	NA	NA	NA	unphased	0.924242424	0.924242424	1	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214133288	2	144932985	C	T	GTDC1	CCDS33300.1	r.?	-	-	intronic	32	0	0	62	13	20.96774194	0	0	NA	0	0	NA	8.08E-18	3	2	1	1	NA	NA	NA	unphased	1.162756598	1.162756598	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214133350	2	146015591	C	T	-	-	-	-	-	-	37	0	0	82	6	7.317073171	0	0	NA	0	0	NA	3.95E-06	3	2	1	1	NA	NA	NA	unphased	0.405764967	0.405764967	1	0.2625	0.7375	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214133878	2	154861608	C	T	GALNT13	CCDS2199.1	r.?	-	-	intronic	43	0	0	55	13	23.63636364	0	0	NA	0	0	NA	1.46E-18	3	2	1	1	NA	NA	NA	unphased	1.310743802	1.310743802	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214134055	2	158205435	A	T	-	-	-	-	-	-	34	0	0	72	10	13.88888889	0	0	NA	0	0	NA	3.95E-12	3	2	1	1	NA	NA	NA	unphased	0.77020202	0.77020202	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214134167	2	160221725	G	T	BAZ2B	CCDS2209.2	r.?	-	-	intronic	37	0	0	75	14	18.66666667	16	0	0	6	0	0	2.57E-18	3	2	1	1	NA	NA	NA	unphased	1.035151515	1.035151515	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214134373	2	162883228	G	T	DPP4	CCDS2216.1	r.?	-	-	intronic	30	0	0	59	16	27.11864407	0	0	NA	0	0	NA	1.37E-23	4	2	2	1	NA	NA	NA	unphased	1.775038521	0.88751926	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214134402	2	163627291	C	T	KCNH7	CCDS2219.1	r.?	-	-	intronic	33	0	0	88	13	14.77272727	0	0	NA	0	0	NA	1.03E-15	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214134403	2	163627357	C	T	KCNH7	CCDS2219.1	r.?	-	-	intronic	31	0	0	96	14	14.58333333	0	0	NA	0	0	NA	9.96E-17	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214134421	2	163910164	C	T	-	-	-	-	-	-	29	0	0	68	25	36.76470588	0	0	NA	0	0	NA	6.41E-40	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214134423	2	163968839	G	T	-	-	-	-	-	-	24	0	0	60	16	26.66666667	0	0	NA	0	0	NA	1.86E-23	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214134628	2	167450327	A	T	-	-	-	-	-	-	31	0	0	92	14	15.2173913	0	0	NA	0	0	NA	5.34E-17	4	2	2	1	NA	NA	NA	unphased	0.996047431	0.996047431	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214134644	2	167562545	C	T	-	-	-	-	-	-	33	0	0	83	28	33.73493976	0	0	NA	0	0	NA	2.91E-43	4	2	2	1	NA	NA	NA	unphased	2.208105148	1.104052574	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214134656	2	167901407	C	T	XIRP2	CCDS42769.1	r.?	-	-	intronic	41	0	0	77	9	11.68831169	0	0	NA	0	0	NA	2.32E-10	4	2	2	1	NA	NA	NA	unphased	0.765053129	0.765053129	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214134785	2	170027851	G	T	LRP2	CCDS2232.1	r.?	-	-	intronic	29	0	0	84	17	20.23809524	0	0	NA	0	0	NA	1.42E-22	4	2	2	1	NA	NA	NA	unphased	1.324675325	1.324675325	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214134886	2	171118531	C	T	MYO3B	CCDS42773.1	r.?	-	-	intronic	40	0	0	84	21	25	0	0	NA	0	0	NA	1.15E-29	4	2	2	1	NA	NA	NA	unphased	1.636363636	0.818181818	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214135014	2	172400097	C	T	CYBRD1	CCDS2244.1	r.?	-	-	intronic	28	0	0	81	8	9.87654321	0	0	NA	0	0	NA	9.08E-09	4	2	2	1	NA	NA	NA	unphased	0.646464646	0.646464646	1	0.01	0.99	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214135395	2	176470194	C	T	-	-	-	-	-	-	38	0	0	69	18	26.08695652	0	0	NA	0	0	NA	5.16E-26	4	2	2	1	NA	NA	NA	unphased	1.707509881	0.853754941	2	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214135515	2	178041389	C	T	-	-	-	-	-	-	23	0	0	76	18	23.68421053	0	0	NA	0	0	NA	3.63E-25	4	2	2	1	NA	NA	NA	unphased	1.550239234	0.775119617	2	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214135886	2	182863860	A	T	PPP1R1C	CCDS46468.1	r.?	-	-	intronic	31	0	0	83	14	16.86746988	0	0	NA	0	0	NA	1.17E-17	4	2	2	1	NA	NA	NA	unphased	1.104052574	1.104052574	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214136007	2	184313790	G	T	-	-	-	-	-	-	39	1	2.564102564	110	7	6.363636364	0	0	NA	0	0	NA	1.59E-06	4	2	2	1	NA	NA	NA	unphased	0.416528926	0.416528926	1	0.29625	0.70375	0	2	0.177567718	1	1	NA	NA	NA	NA
1352322	PD9768b	1214136079	2	185400355	A	T	-	-	-	-	-	-	42	0	0	56	15	26.78571429	0	0	NA	0	0	NA	4.09E-22	4	2	2	1	NA	NA	NA	unphased	1.753246753	0.876623377	2	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214136103	2	186059778	C	T	-	-	-	-	-	-	33	0	0	58	11	18.96551724	0	0	NA	0	0	NA	8.96E-15	4	2	2	1	NA	NA	NA	unphased	1.24137931	1.24137931	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214136284	2	188140537	C	T	-	-	-	-	-	-	38	0	0	65	20	30.76923077	0	0	NA	0	0	NA	2.18E-30	4	2	2	1	NA	NA	NA	unphased	2.013986014	1.006993007	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214136372	2	189585925	C	T	-	-	-	-	-	-	28	0	0	82	14	17.07317073	0	0	NA	0	0	NA	9.77E-18	4	2	2	1	NA	NA	NA	unphased	1.11751663	1.11751663	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214136729	2	194484983	A	T	-	-	-	-	-	-	28	0	0	65	13	20	0	0	NA	0	0	NA	1.57E-17	4	2	2	1	NA	NA	NA	unphased	1.309090909	1.309090909	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214136883	2	196450545	G	T	SLC39A10	ENST00000458054	r.?	-	-	intronic	23	0	0	78	7	8.974358974	0	0	NA	0	0	NA	1.51E-07	4	2	2	1	NA	NA	NA	unphased	0.587412587	0.587412587	1	0.0275	0.9725	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214137107	2	198579984	A	T	ENSG00000222017	ENST00000409845	r.?	-	-	intronic	34	0	0	65	22	33.84615385	0	0	NA	0	0	NA	2.36E-34	4	2	2	1	NA	NA	NA	unphased	2.215384615	1.107692308	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214137473	2	203088777	C	T	SUMO1P3	CCDS2352.1	r.?	-	-	intronic	6	0	0	83	9	10.84337349	0	0	NA	0	0	NA	4.60E-10	4	2	2	1	NA	NA	NA	unphased	0.709748083	0.709748083	1	0.005	0.995	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214138075	2	209509881	G	T	-	-	-	-	-	-	39	0	0	58	12	20.68965517	0	0	NA	0	0	NA	1.76E-16	4	2	2	1	NA	NA	NA	unphased	1.354231975	1.354231975	1	0	0.99625	0.00375	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214138093	2	209758885	C	T	-	-	-	-	-	-	24	0	0	81	28	34.56790123	0	0	NA	0	0	NA	1.28E-43	4	2	2	1	NA	NA	NA	unphased	2.262626263	1.131313131	2	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214138210	2	211723033	G	T	-	-	-	-	-	-	39	0	0	89	14	15.73033708	0	0	NA	0	0	NA	3.28E-17	4	2	2	1	NA	NA	NA	unphased	1.029622063	1.029622063	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214138531	2	216334682	A	T	-	-	-	-	-	-	38	0	0	70	28	40	0	0	NA	0	0	NA	8.50E-46	2.085536502	2	0	0.914463498	2	1	0.085536502	unphased	1.852396419	0.96757991	1.914463498	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214138604	2	217559841	C	T	IGFBP5	CCDS2405.1	r.408g>a	c.?	p.?	5'UTR variant	7	0	0	41	17	41.46341463	0	0	NA	0	0	NA	1.03E-28	2.085536502	2	0	0.914463498	2	1	0.085536502	unphased	1.92016702	1.002979175	1.914463498	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214139965	20	685752	C	T	-	-	-	-	-	-	26	0	0	76	19	25	0	0	NA	0	0	NA	5.56E-27	4	2	2	1	NA	NA	NA	unphased	1.636363636	0.818181818	2	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214140674	20	9750528	A	T	PAK7	CCDS13107.1	r.?	-	-	intronic	34	0	0	66	13	19.6969697	0	0	NA	0	0	NA	1.95E-17	4	2	2	1	NA	NA	NA	unphased	1.289256198	1.289256198	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214140847	20	12308352	G	T	-	-	-	-	-	-	35	0	0	93	10	10.75268817	0	0	NA	0	0	NA	5.41E-11	3.731603834	2	1	0.268396166	2	2	0.731603834	unphased	0.674952514	0.922565578	0.731603834	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214140848	20	12322445	G	T	-	-	-	-	-	-	34	0	0	69	20	28.98550725	0	0	NA	0	0	NA	8.73E-30	3.731603834	2	1	0.268396166	2	2	0.731603834	unphased	1.819437211	0.909718606	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214141511	20	20853448	C	T	-	-	-	-	-	-	28	0	0	78	16	20.51282051	0	0	NA	0	0	NA	1.96E-21	3.731603834	2	1	0.268396166	2	2	0.731603834	unphased	1.287601719	1.287601719	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214141564	20	21633927	C	T	-	-	-	-	-	-	34	0	0	70	17	24.28571429	0	0	NA	0	0	NA	4.68E-24	3.731603834	2	1	0.268396166	2	2	0.731603834	unphased	1.524428464	1.201855149	1.268396166	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214141625	20	22425290	A	T	-	-	-	-	-	-	25	0	0	61	14	22.95081967	0	0	NA	0	0	NA	1.10E-19	3.731603834	2	1	0.268396166	2	2	0.731603834	unphased	1.440636349	1.440636349	1	0	0.99625	0.00375	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214141649	20	22790183	C	T	-	-	-	-	-	-	15	0	0	57	11	19.29824561	0	0	NA	0	0	NA	7.29E-15	3.731603834	2	1	0.268396166	2	2	0.731603834	unphased	1.211362143	1.211362143	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214145513	20	32266293	C	T	E2F1	CCDS13224.1	r.?	-	-	intronic	8	0	0	66	6	9.090909091	0	0	NA	0	0	NA	1.10E-06	4	2	2	1	NA	NA	NA	unphased	0.595041322	0.595041322	1	0.01875	0.98125	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214145517	20	32296867	G	T	PXMP4	CCDS13225.1	r.?	-	-	intronic	28	0	0	87	6	6.896551724	0	0	NA	0	0	NA	5.58E-06	4	2	2	1	NA	NA	NA	unphased	0.451410658	0.451410658	1	0.1175	0.8825	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214145538	20	32546973	G	T	-	-	-	-	-	-	14	0	0	56	16	28.57142857	2	0	0	0	0	NA	5.26E-24	4	2	2	1	NA	NA	NA	unphased	1.87012987	0.935064935	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214145790	20	35162101	C	T	-	-	-	-	-	-	20	0	0	76	15	19.73684211	0	0	NA	0	0	NA	6.51E-20	4	2	2	1	NA	NA	NA	unphased	1.291866029	1.291866029	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214145811	20	35392267	C	T	DSN1	CCDS13286.1	r.?	-	-	intronic	14	0	0	53	15	28.30188679	0	0	NA	0	0	NA	1.60E-22	4	2	2	1	NA	NA	NA	unphased	1.852487136	0.926243568	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214146282	20	41345341	A	T	PTPRT	CCDS42874.1	r.?	-	-	intronic	31	0	0	71	25	35.21126761	0	0	NA	0	0	NA	2.38E-39	4	2	2	1	NA	NA	NA	unphased	2.304737516	1.152368758	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214146317	20	41927800	G	T	-	-	-	-	-	-	32	0	0	75	19	25.33333333	0	0	NA	0	0	NA	4.19E-27	4	2	2	1	NA	NA	NA	unphased	1.658181818	0.829090909	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214146605	20	45063731	C	T	-	-	-	-	-	-	27	0	0	75	10	13.33333333	0	0	NA	0	0	NA	6.02E-12	4	2	2	1	NA	NA	NA	unphased	0.872727273	0.872727273	1	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214147130	20	49271779	G	T	FAM65C	CCDS13431.2	r.?	-	-	intronic	22	0	0	69	20	28.98550725	0	0	NA	0	0	NA	8.73E-30	4	2	2	1	NA	NA	NA	unphased	1.897233202	0.948616601	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214147324	20	51070453	C	T	-	-	-	-	-	-	29	0	0	75	28	37.33333333	0	0	NA	0	0	NA	9.34E-45	4	2	2	1	NA	NA	NA	unphased	2.443636364	1.221818182	2	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214147657	20	54054044	C	T	-	-	-	-	-	-	31	0	0	99	25	25.25252525	0	0	NA	0	0	NA	3.80E-35	4	2	2	1	NA	NA	NA	unphased	1.652892562	0.826446281	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214147897	20	57127988	C	T	-	-	-	-	-	-	28	0	0	74	19	25.67567568	0	0	NA	0	0	NA	3.14E-27	4	2	2	1	NA	NA	NA	unphased	1.680589681	0.84029484	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214147931	20	57725279	C	T	-	-	-	-	-	-	34	0	0	88	24	27.27272727	0	0	NA	0	0	NA	1.03E-34	4	2	2	1	NA	NA	NA	unphased	1.785123967	0.892561983	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214152494	21	10865328	C	T	IGHV1OR15-5	ENST00000302092	r.?	-	-	downstream	53	0	0	152	30	19.73684211	0	0	NA	0	0	NA	2.58E-38	1.765333865	1	0	0.234666135	2	0	0.765333865	unphased	0.850813502	1.111689344	0.765333865	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214154023	21	14937583	C	T	-	-	-	-	-	-	38	0	0	50	10	20	0	0	NA	0	0	NA	8.36E-14	1.765333865	1	0	0.234666135	2	0	0.765333865	unphased	0.862157682	1.126511868	0.765333865	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214154290	21	16687040	C	T	-	-	-	-	-	-	31	0	0	53	23	43.39622642	0	0	NA	0	0	NA	6.43E-39	1.765333865	1	0	0.234666135	2	0	0.765333865	unphased	1.870719499	1.059697282	1.765333865	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214154582	21	22137578	A	T	-	-	-	-	-	-	37	0	0	58	24	41.37931034	0	0	NA	0	0	NA	6.49E-40	1.765333865	1	0	0.234666135	2	0	0.765333865	unphased	1.783774515	1.010445984	1.765333865	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214154584	21	22148973	A	T	-	-	-	-	-	-	28	0	0	61	24	39.3442623	0	0	NA	0	0	NA	2.97E-39	1.765333865	1	0	0.234666135	2	0	0.765333865	unphased	1.696047899	0.960751919	1.765333865	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214154627	21	23271333	C	T	-	-	-	-	-	-	36	0	0	65	28	43.07692308	0	0	NA	0	0	NA	6.12E-47	1.765333865	1	0	0.234666135	2	0	0.765333865	unphased	1.856955008	1.051900178	1.765333865	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214155028	21	31239384	A	T	GRIK1	CCDS42913.1	r.?	-	-	intronic	35	0	0	50	22	44	0	0	NA	0	0	NA	1.85E-37	1.765333865	1	0	0.234666135	2	0	0.765333865	unphased	1.896746901	1.074440897	1.765333865	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214155033	21	31339112	C	T	-	-	-	-	-	-	31	0	0	43	18	41.86046512	0	0	NA	0	0	NA	2.06E-30	1.765333865	1	0	0.234666135	2	0	0.765333865	unphased	1.804516079	1.022195356	1.765333865	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214155250	21	34876669	C	T	GART	CCDS13627.1	r.?	-	-	intronic	37	0	0	67	8	11.94029851	146	1	0.684931507	137	11	8.02919708	1.96E-09	1.765333865	1	0	0.234666135	2	0	0.765333865	unphased	0.514721004	0.672544399	0.765333865	0.0125	0.9875	0	2	1	1.45E-10	0.518972629	YES	1_1	somatic	custom.pulldown.HiSeq
1352322	PD9768b	1214155323	21	36031408	C	T	-	-	-	-	-	-	34	0	0	60	24	40	0	0	NA	0	0	NA	1.81E-39	1.765333865	1	0	0.234666135	2	0	0.765333865	unphased	1.724315364	0.976764451	1.765333865	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214155640	21	41480163	A	T	DSCAM	CCDS42929.1	r.?	-	-	intronic	29	0	0	66	31	46.96969697	0	0	NA	0	0	NA	2.52E-53	1.765333865	1	0	0.234666135	2	0	0.765333865	unphased	2.024764253	1.146958257	1.765333865	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214157632	22	25058538	C	T	-	-	-	-	-	-	21	0	0	68	26	38.23529412	0	0	NA	0	0	NA	5.33E-42	2.072240472	2	0	0.927759528	2	1	0.072240472	unphased	1.765589271	0.915876304	1.927759528	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214157679	22	25819490	C	T	-	-	-	-	-	-	10	0	0	49	24	48.97959184	0	0	NA	0	0	NA	3.34E-42	2.072240472	2	0	0.927759528	2	1	0.072240472	unphased	2.261728172	1.130864086	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214157728	22	26691990	C	T	SEZ6L	CCDS13833.1	r.?	-	-	intronic	36	0	0	68	32	47.05882353	197	0	0	159	74	46.5408805	4.95E-55	2.072240472	2	0	0.927759528	2	1	0.072240472	unphased	2.17303295	1.086516475	2	0	1	0	2	1	1.10E-124	1	YES	1_1	somatic	custom.pulldown.HiSeq
1352322	PD9768b	1214157733	22	26721150	C	T	SEZ6L	CCDS13833.1	r.?	-	-	intronic	24	0	0	59	23	38.98305085	0	0	NA	0	0	NA	1.45E-37	2.072240472	2	0	0.927759528	2	1	0.072240472	unphased	1.800118397	0.933787835	1.927759528	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214158046	22	31878190	G	T	EIF4ENIF1	CCDS13898.1	r.?	-	-	intronic	26	0	0	50	5	10	0	0	NA	0	0	NA	5.49E-06	2.072240472	2	0	0.927759528	2	1	0.072240472	unphased	0.461769502	0.461769502	1	0.07875	0.92125	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214158157	22	33553724	C	T	-	-	-	-	-	-	36	0	0	54	7	12.96296296	0	0	NA	0	0	NA	1.13E-08	2.072240472	2	0	0.927759528	2	1	0.072240472	unphased	0.598590095	0.598590095	1	0.01875	0.98125	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214158607	22	41305456	G	T	XPNPEP3	CCDS14007.1	r.?	-	-	intronic	25	0	0	45	5	11.11111111	0	0	NA	0	0	NA	3.23E-06	2.072240472	2	0	0.927759528	2	1	0.072240472	unphased	0.513077224	0.513077224	1	0.04	0.96	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214159630	3	4854999	G	T	ITPR1	CCDS46740.1	r.?	-	-	intronic	29	0	0	82	10	12.19512195	0	0	NA	0	0	NA	1.51E-11	3.412637193	3	0	0.587362807	4	0	0.412637193	unphased	0.726596553	0.726596553	1	0.00625	0.99375	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214159890	3	7541110	C	T	GRM7	CCDS43042.1	r.?	-	-	intronic	27	0	0	82	21	25.6097561	0	0	NA	0	0	NA	6.53E-30	3.412637193	3	0	0.587362807	4	0	0.412637193	unphased	1.525852762	1.080144831	1.412637193	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214161186	3	21692076	C	T	ZNF385D	CCDS2636.1	r.?	-	-	intronic	36	0	0	65	36	55.38461538	0	0	NA	0	0	NA	3.17E-65	3.412637193	3	0	0.587362807	4	0	0.412637193	unphased	3.299866193	0.966954882	3.412637193	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214161316	3	23453767	G	T	UBE2E2	CCDS2637.1	r.?	-	-	intronic	30	0	0	71	13	18.30985915	0	0	NA	0	0	NA	5.42E-17	3.412637193	3	0	0.587362807	4	0	0.412637193	unphased	1.090918206	1.090918206	1	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214161815	3	28983481	G	T	-	-	-	-	-	-	24	0	0	69	6	8.695652174	0	0	NA	0	0	NA	1.43E-06	3.412637193	3	0	0.587362807	4	0	0.412637193	unphased	0.518094934	1.255570131	0.412637193	0.0025	0.99625	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214161854	3	29418329	G	T	RBMS3	CCDS33725.1	r.?	-	-	intronic	10	0	0	70	11	15.71428571	0	0	NA	0	0	NA	8.06E-14	3.412637193	3	0	0.587362807	4	0	0.412637193	unphased	0.936271559	0.936271559	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214162510	3	38119740	C	T	DLEC1	CCDS2672.2	r.?	-	-	intronic	40	0	0	66	14	21.21212121	0	0	NA	0	0	NA	3.71E-19	3	3	0	1	NA	NA	NA	unphased	1.17630854	1.17630854	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214163428	3	49726365	C	T	MST1	CCDS33757.2	r.122g>a	c.?	p.?	5'UTR variant	9	0	0	93	9	9.677419355	0	0	NA	0	0	NA	1.29E-09	2	2	0	1	NA	NA	NA	unphased	0.439882698	0.439882698	1	0.49375	0.50625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214164431	3	67072892	C	T	-	-	-	-	-	-	52	0	0	53	23	43.39622642	0	0	NA	0	0	NA	6.43E-39	2	2	0	1	NA	NA	NA	unphased	1.972555746	0.986277873	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214164695	3	72644350	C	T	AC103560.1	ENST00000509224	r.?	-	-	intronic	23	0	0	57	15	26.31578947	0	0	NA	0	0	NA	5.53E-22	2	2	0	1	NA	NA	NA	unphased	1.196172249	1.196172249	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214164767	3	73691377	G	T	-	-	-	-	-	-	29	0	0	51	21	41.17647059	0	0	NA	0	0	NA	4.73E-35	2	2	0	1	NA	NA	NA	unphased	1.871657754	0.935828877	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214166396	3	82234314	C	T	-	-	-	-	-	-	36	0	0	53	22	41.50943396	0	0	NA	0	0	NA	9.50E-37	2	2	0	1	NA	NA	NA	unphased	1.886792453	0.943396226	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214166448	3	83626723	C	T	-	-	-	-	-	-	38	0	0	48	9	18.75	0	0	NA	0	0	NA	2.75E-12	2	2	0	1	NA	NA	NA	unphased	0.852272727	0.852272727	1	0.00375	0.99625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214166602	3	87017883	G	T	VGLL3	CCDS43110.1	r.1158c>a	c.794C>A	p.P265H	missense	16	0	0	35	15	42.85714286	208	0	0	102	38	37.25490196	9.02E-26	2	2	0	1	NA	NA	NA	unphased	1.948051948	0.974025974	2	0	1	0	2	1	3.86E-60	1	YES	1_1	somatic	custom.pulldown.HiSeq
1352322	PD9768b	1214166672	3	88070352	A	T	-	-	-	-	-	-	49	0	0	62	5	8.064516129	0	0	NA	0	0	NA	1.60E-05	2	2	0	1	NA	NA	NA	unphased	0.366568915	0.366568915	1	0.30375	0.69625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214166739	3	89377018	C	T	EPHA3	CCDS2922.1	r.?	-	-	intronic	24	0	0	41	11	26.82926829	0	0	NA	0	0	NA	1.34E-16	2	2	0	1	NA	NA	NA	unphased	1.219512195	1.219512195	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214166742	3	89429595	A	T	EPHA3	CCDS2922.1	r.?	-	-	intronic	22	0	0	48	20	41.66666667	0	0	NA	0	0	NA	1.40E-33	2	2	0	1	NA	NA	NA	unphased	1.893939394	0.946969697	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214166767	3	90014466	C	T	-	-	-	-	-	-	38	0	0	59	8	13.55932203	0	0	NA	0	0	NA	6.90E-10	2	2	0	1	NA	NA	NA	unphased	0.61633282	0.61633282	1	0.0175	0.9825	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214167545	3	103011273	A	T	-	-	-	-	-	-	30	0	0	61	23	37.70491803	0	0	NA	0	0	NA	3.73E-37	2	2	0	1	NA	NA	NA	unphased	1.713859911	0.856929955	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214167650	3	104640053	G	T	-	-	-	-	-	-	30	0	0	65	16	24.61538462	0	0	NA	0	0	NA	7.85E-23	2	2	0	1	NA	NA	NA	unphased	1.118881119	1.118881119	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214167821	3	107719676	C	T	-	-	-	-	-	-	35	0	0	53	19	35.8490566	0	0	NA	0	0	NA	1.93E-30	2	2	0	1	NA	NA	NA	unphased	1.629502573	0.814751286	2	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214168152	3	114553245	C	T	ZBTB20	CCDS2981.1	r.?	-	-	intronic	28	0	0	50	18	36	0	0	NA	0	0	NA	5.92E-29	2	2	0	1	NA	NA	NA	unphased	1.636363636	0.818181818	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214168170	3	114926054	C	T	-	-	-	-	-	-	34	0	0	47	25	53.19148936	0	0	NA	0	0	NA	3.98E-45	2	2	0	1	NA	NA	NA	unphased	2.417794971	1.208897485	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214168230	3	116032216	C	T	LSAMP	CCDS2982.1	r.?	-	-	intronic	34	0	0	45	20	44.44444444	0	0	NA	0	0	NA	2.68E-34	2	2	0	1	NA	NA	NA	unphased	2.02020202	1.01010101	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214168291	3	117298218	A	T	-	-	-	-	-	-	31	0	0	53	17	32.0754717	0	0	NA	0	0	NA	2.08E-26	2	2	0	1	NA	NA	NA	unphased	1.457975986	1.457975986	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214168498	3	121108649	C	T	STXBP5L	CCDS43137.1	r.?	-	-	intronic	34	0	0	48	24	50	0	0	NA	0	0	NA	1.71E-42	2	2	0	1	NA	NA	NA	unphased	2.272727273	1.136363636	2	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214168680	3	124485968	A	T	ITGB5	CCDS3030.1	r.?	-	-	intronic	13	0	0	65	23	35.38461538	0	0	NA	0	0	NA	2.21E-36	2	2	0	1	NA	NA	NA	unphased	1.608391608	0.804195804	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214169222	3	132427036	A	T	NPHP3	CCDS3078.1	r.1271u>a	c.1184T>A	p.F395Y	missense	36	0	0	75	8	10.66666667	133	0	0	133	13	9.77443609	4.89E-09	2	2	0	1	NA	NA	NA	unphased	0.484848485	0.484848485	1	0.1525	0.8475	0	2	1	2.50E-13	1	YES	1_1	somatic	custom.pulldown.HiSeq
1352322	PD9768b	1214169383	3	134608680	C	T	EPHB1	CCDS46921.1	r.?	-	-	intronic	12	0	0	56	16	28.57142857	0	0	NA	0	0	NA	5.26E-24	2	2	0	1	NA	NA	NA	unphased	1.298701299	1.298701299	1	0.00125	0.99625	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214169517	3	137291410	C	T	-	-	-	-	-	-	27	0	0	46	22	47.82608696	0	0	NA	0	0	NA	1.68E-38	2	2	0	1	NA	NA	NA	unphased	2.173913043	1.086956522	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214169521	3	137315728	C	T	-	-	-	-	-	-	29	0	0	58	23	39.65517241	0	0	NA	0	0	NA	8.87E-38	2	2	0	1	NA	NA	NA	unphased	1.802507837	0.901253918	2	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214170001	3	146978184	C	T	-	-	-	-	-	-	29	0	0	56	24	42.85714286	0	0	NA	0	0	NA	2.23E-40	2	2	0	1	NA	NA	NA	unphased	1.948051948	0.974025974	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214170713	3	161730791	C	T	-	-	-	-	-	-	50	0	0	49	8	16.32653061	0	0	NA	0	0	NA	1.47E-10	2	2	0	1	NA	NA	NA	unphased	0.742115028	0.742115028	1	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214170777	3	162817698	C	T	-	-	-	-	-	-	35	0	0	53	16	30.18867925	0	0	NA	0	0	NA	1.90E-24	2	2	0	1	NA	NA	NA	unphased	1.372212693	1.372212693	1	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214171332	3	172672419	G	T	SPATA16	CCDS3221.1	r.?	-	-	intronic	28	0	0	49	11	22.44897959	0	0	NA	0	0	NA	1.19E-15	2	2	0	1	NA	NA	NA	unphased	1.020408163	1.020408163	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214171640	3	177741200	C	T	-	-	-	-	-	-	22	0	0	57	6	10.52631579	0	0	NA	0	0	NA	4.56E-07	2	2	0	1	NA	NA	NA	unphased	0.4784689	0.4784689	1	0.06875	0.93125	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214171760	3	180366859	G	T	CCDC39	CCDS46964.1	r.?	-	-	intronic	32	0	0	70	24	34.28571429	0	0	NA	0	0	NA	1.68E-37	2	2	0	1	NA	NA	NA	unphased	1.558441558	0.779220779	2	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214171784	3	181167772	C	T	-	-	-	-	-	-	30	0	0	61	9	14.75409836	0	0	NA	0	0	NA	2.68E-11	2	2	0	1	NA	NA	NA	unphased	0.670640835	0.670640835	1	0.005	0.995	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214172395	3	190889138	C	T	-	-	-	-	-	-	32	0	0	70	17	24.28571429	0	0	NA	0	0	NA	4.68E-24	2	2	0	1	NA	NA	NA	unphased	1.103896104	1.103896104	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214172530	3	193547825	G	T	-	-	-	-	-	-	23	0	0	43	25	58.13953488	0	0	NA	0	0	NA	1.66E-46	2	2	0	1	NA	NA	NA	unphased	2.642706131	1.321353066	2	0	0.995	0.005	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214173333	4	1159214	A	T	SPON2	CCDS3347.1	r.?	-	-	downstream	6	0	0	55	4	7.272727273	0	0	NA	0	0	NA	0.000173903	1.74953812	1	0	0.25046188	2	0	0.74953812	unphased	0.312363103	0.416740783	0.74953812	0.08625	0.91375	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214173581	4	4075668	A	T	AC116562.2	ENST00000503960	r.?	-	-	intronic	30	0	0	54	5	9.259259259	0	0	NA	0	0	NA	8.06E-06	1.74953812	1	0	0.25046188	2	0	0.74953812	unphased	0.397684506	0.530572756	0.74953812	0.02375	0.97625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214173654	4	5089769	G	T	STK32B	CCDS3380.1	r.?	-	-	intronic	25	0	0	39	14	35.8974359	0	0	NA	0	0	NA	8.19E-23	1.74953812	1	0	0.25046188	2	0	0.74953812	unphased	1.541792239	0.881256728	1.74953812	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214173664	4	5358322	C	T	STK32B	CCDS3380.1	r.?	-	-	intronic	22	0	0	42	15	35.71428571	0	0	NA	0	0	NA	2.65E-24	1.74953812	1	0	0.25046188	2	0	0.74953812	unphased	1.533925952	0.87676052	1.74953812	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214173896	4	9658354	C	T	-	-	-	-	-	-	24	0	0	62	6	9.677419355	142	0	0	96	3	3.125	7.56E-07	1.74953812	1	0	0.25046188	2	0	0.74953812	unphased	0.415644452	0.554534106	0.74953812	0.03125	0.96875	0	2	1	0.012645497	1	YES	1_1	somatic	custom.pulldown.HiSeq
1352322	PD9768b	1214174029	4	11891929	G	T	-	-	-	-	-	-	41	0	0	45	5	11.11111111	0	0	NA	0	0	NA	3.23E-06	1.74953812	1	0	0.25046188	2	0	0.74953812	unphased	0.477221407	0.636687307	0.74953812	0.00625	0.99375	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214174096	4	13489538	A	T	RAB28	CCDS3409.1	r.?	-	-	upstream	39	0	0	41	17	41.46341463	0	0	NA	0	0	NA	1.03E-28	1.74953812	1	0	0.25046188	2	0	0.74953812	unphased	1.780850617	1.017897579	1.74953812	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214174245	4	16976327	C	T	-	-	-	-	-	-	37	0	0	44	15	34.09090909	0	0	NA	0	0	NA	6.12E-24	1.74953812	1	0	0.25046188	2	0	0.74953812	unphased	1.464202045	1.464202045	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214174478	4	22157849	C	T	-	-	-	-	-	-	32	0	0	54	14	25.92592593	0	0	NA	0	0	NA	1.64E-20	1.74953812	1	0	0.25046188	2	0	0.74953812	unphased	1.113516617	1.113516617	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214174536	4	23648299	G	T	-	-	-	-	-	-	38	0	0	54	16	29.62962963	0	0	NA	0	0	NA	2.69E-24	1.74953812	1	0	0.25046188	2	0	0.74953812	unphased	1.272590419	1.272590419	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214174777	4	27937767	C	T	-	-	-	-	-	-	37	0	0	58	7	12.06896552	0	0	NA	0	0	NA	1.88E-08	1.74953812	1	0	0.25046188	2	0	0.74953812	unphased	0.518361184	0.691574144	0.74953812	0.00875	0.99125	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214174879	4	30297153	G	T	ENSG00000237496	ENST00000424014	r.?	-	-	intronic	27	0	0	57	17	29.8245614	0	0	NA	0	0	NA	8.82E-26	1.74953812	1	0	0.25046188	2	0	0.74953812	unphased	1.280962725	1.280962725	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214175190	4	35442072	G	T	-	-	-	-	-	-	33	0	0	42	23	54.76190476	0	0	NA	0	0	NA	4.86E-42	1.74953812	1	0	0.25046188	2	0	0.74953812	unphased	2.352019793	1.344366131	1.74953812	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214175270	4	36767828	G	T	-	-	-	-	-	-	31	0	0	46	18	39.13043478	1	0	0	0	0	NA	9.41E-30	1.74953812	1	0	0.25046188	2	0	0.74953812	unphased	1.680649304	0.96062457	1.74953812	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214175555	4	41369585	C	T	LIMCH1	CCDS33977.1	r.?	-	-	intronic	20	0	0	45	20	44.44444444	0	0	NA	0	0	NA	2.68E-34	1.74953812	1	0	0.25046188	2	0	0.74953812	unphased	1.908885629	1.091079758	1.74953812	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214175640	4	43205522	G	T	-	-	-	-	-	-	43	0	0	61	6	9.836065574	0	0	NA	0	0	NA	6.85E-07	1.74953812	1	0	0.25046188	2	0	0.74953812	unphased	0.422458295	0.563624829	0.74953812	0.0275	0.9725	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214175792	4	45704404	C	T	-	-	-	-	-	-	31	0	0	60	11	18.33333333	0	0	NA	0	0	NA	1.34E-14	1.74953812	1	0	0.25046188	2	0	0.74953812	unphased	0.787415322	1.050534057	0.74953812	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214175800	4	45799825	C	T	-	-	-	-	-	-	32	0	0	46	6	13.04347826	0	0	NA	0	0	NA	1.23E-07	1.74953812	1	0	0.25046188	2	0	0.74953812	unphased	0.560216435	0.747415534	0.74953812	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214175815	4	46269481	A	T	GABRA2	CCDS3471.1	r.?	-	-	intronic	33	0	0	48	20	41.66666667	0	0	NA	0	0	NA	1.40E-33	1.74953812	1	0	0.25046188	2	0	0.74953812	unphased	1.789580277	1.022887273	1.74953812	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214175976	4	48976534	G	T	-	-	-	-	-	-	33	0	0	63	7	11.11111111	0	0	NA	0	0	NA	3.38E-08	3	2	1	1	NA	NA	NA	unphased	0.616161616	0.616161616	1	0.0125	0.9875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214179644	4	56229251	C	T	SRD5A3	CCDS3498.1	r.?	-	-	intronic	12	0	0	67	10	14.92537313	0	0	NA	0	0	NA	1.87E-12	3	2	1	1	NA	NA	NA	unphased	0.827679783	0.827679783	1	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214179790	4	58330044	C	T	-	-	-	-	-	-	38	0	0	83	11	13.25301205	0	0	NA	0	0	NA	5.66E-13	3	2	1	1	NA	NA	NA	unphased	0.734939759	0.734939759	1	0.005	0.995	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214179845	4	59449070	C	T	-	-	-	-	-	-	29	0	0	58	13	22.4137931	0	0	NA	0	0	NA	3.12E-18	3	2	1	1	NA	NA	NA	unphased	1.242946708	1.242946708	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214179924	4	60478760	C	T	-	-	-	-	-	-	29	0	0	56	23	41.07142857	0	0	NA	0	0	NA	3.22E-38	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	1.766485103	1.00622735	1.755552662	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214180591	4	74788698	A	T	-	-	-	-	-	-	28	0	0	40	18	45	0	0	NA	0	0	NA	3.90E-31	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	1.935453244	1.102475183	1.755552662	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214180628	4	75907039	C	T	PARM1	CCDS47077.1	r.?	-	-	intronic	14	0	0	40	19	47.5	0	0	NA	0	0	NA	2.27E-33	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	2.042978424	1.163723805	1.755552662	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214180690	4	77259143	C	T	CCDC158	CCDS43242.1	r.?	-	-	intronic	29	0	0	62	30	48.38709677	0	0	NA	0	0	NA	3.60E-52	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	2.08113252	1.185457187	1.755552662	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214180994	4	84063284	C	T	-	-	-	-	-	-	13	0	0	37	14	37.83783784	0	0	NA	0	0	NA	3.35E-23	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	1.627408133	0.92700616	1.755552662	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214181006	4	84270232	C	T	-	-	-	-	-	-	34	0	0	55	23	41.81818182	0	0	NA	0	0	NA	1.91E-38	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	1.798603014	1.024522393	1.755552662	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214181008	4	84354918	C	T	HELQ	CCDS3603.1	r.?	-	-	intronic	19	0	0	50	7	14	0	0	NA	0	0	NA	6.46E-09	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	0.602141009	0.796954387	0.755552662	0.0075	0.9925	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214181057	4	85369454	A	T	-	-	-	-	-	-	37	0	0	57	7	12.28070175	0	0	NA	0	0	NA	1.66E-08	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	0.528193868	0.699082796	0.755552662	0.01125	0.98875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214181415	4	93197771	C	T	-	-	-	-	-	-	21	0	0	37	14	37.83783784	0	0	NA	0	0	NA	3.35E-23	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	1.627408133	0.92700616	1.755552662	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214181442	4	94016435	C	T	GRID2	CCDS3637.1	r.?	-	-	intronic	30	0	0	55	24	43.63636364	0	0	NA	0	0	NA	1.28E-40	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	1.876803145	1.069066845	1.755552662	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214181802	4	102041207	G	T	PPP3CA	CCDS34037.1	r.?	-	-	intronic	38	0	0	60	5	8.333333333	0	0	NA	0	0	NA	1.36E-05	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	0.358417267	0.474377611	0.755552662	0.05375	0.94625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214181947	4	104701380	C	T	-	-	-	-	-	-	34	0	0	48	18	37.5	0	0	NA	0	0	NA	2.42E-29	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	1.612877703	0.91872932	1.755552662	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214181992	4	105454511	C	T	-	-	-	-	-	-	31	0	0	59	10	16.94915254	0	0	NA	0	0	NA	4.91E-13	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	0.728984273	0.96483582	0.755552662	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214182184	4	109944615	C	T	COL25A1	CCDS43258.1	r.?	-	-	intronic	46	0	0	66	12	18.18181818	0	0	NA	0	0	NA	9.36E-16	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	0.782001311	1.035005698	0.755552662	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214182494	4	116309587	G	T	-	-	-	-	-	-	32	0	0	41	14	34.14634146	0	0	NA	0	0	NA	1.90E-22	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	1.468636608	1.468636608	1	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214182895	4	124061412	C	T	SPATA5	CCDS3730.1	r.?	-	-	intronic	27	0	0	54	20	37.03703704	0	0	NA	0	0	NA	2.61E-32	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	1.592965633	0.907386982	1.755552662	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214183471	4	132883651	C	T	-	-	-	-	-	-	34	0	0	57	24	42.10526316	0	0	NA	0	0	NA	3.83E-40	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	1.810950403	1.031555727	1.755552662	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214184086	4	145185412	C	T	-	-	-	-	-	-	28	0	0	66	11	16.66666667	0	0	NA	0	0	NA	4.07E-14	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	0.716834535	0.948755223	0.755552662	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214184128	4	146485061	A	T	-	-	-	-	-	-	36	0	0	58	25	43.10344828	0	0	NA	0	0	NA	4.44E-42	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	1.853882417	1.056010712	1.755552662	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214184197	4	148071469	C	T	-	-	-	-	-	-	30	0	0	47	18	38.29787234	0	0	NA	0	0	NA	1.52E-29	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	1.64719425	0.938276752	1.755552662	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214184524	4	154466933	G	T	KIAA0922	CCDS3783.2	r.?	-	-	intronic	19	0	0	45	10	22.22222222	0	0	NA	0	0	NA	2.66E-14	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	0.95577938	0.95577938	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214184717	4	158799209	G	T	-	-	-	-	-	-	39	0	0	57	22	38.59649123	0	0	NA	0	0	NA	7.03E-36	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	1.66003787	0.94559275	1.755552662	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214184739	4	159337254	C	T	RXFP1	ENST00000460056	r.?	-	-	intronic	32	0	0	36	13	36.11111111	0	0	NA	0	0	NA	2.53E-21	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	1.553141492	1.553141492	1	0	0.99625	0.00375	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214184756	4	159598441	G	T	ETFDH	ENST00000511912	r.?	-	-	intronic	34	0	0	60	28	46.66666667	0	0	NA	0	0	NA	3.31E-48	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	2.007136697	1.143307598	1.755552662	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214184770	4	159889234	C	T	C4orf45	CCDS47156.1	r.?	-	-	intronic	19	0	0	49	21	42.85714286	0	0	NA	0	0	NA	1.63E-35	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	1.843288803	1.049976365	1.755552662	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214184845	4	161024936	C	T	-	-	-	-	-	-	45	0	0	40	19	47.5	0	0	NA	0	0	NA	2.27E-33	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	2.042978424	1.163723805	1.755552662	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214184858	4	161291081	C	T	-	-	-	-	-	-	31	0	0	42	7	16.66666667	0	0	NA	0	0	NA	1.81E-09	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	0.716834535	0.948755223	0.755552662	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214184904	4	162256522	A	T	-	-	-	-	-	-	51	0	0	65	27	41.53846154	0	0	NA	0	0	NA	8.98E-45	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	1.786572225	1.0176694	1.755552662	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214185484	4	172058299	C	T	-	-	-	-	-	-	33	0	0	52	17	32.69230769	0	0	NA	0	0	NA	1.42E-26	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	1.40609851	1.40609851	1	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214185793	4	178219621	C	T	-	-	-	-	-	-	39	0	0	50	23	46	0	0	NA	0	0	NA	1.13E-39	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	1.978463316	1.126974632	1.755552662	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214185971	4	181173843	A	T	-	-	-	-	-	-	37	0	0	31	11	35.48387097	0	0	NA	0	0	NA	3.77E-18	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	1.526163848	1.526163848	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214186065	4	182610995	C	T	-	-	-	-	-	-	29	0	0	68	23	33.82352941	0	0	NA	0	0	NA	7.70E-36	1.755552662	1	0	0.244447338	2	0	0.755552662	unphased	1.454752438	0.828657818	1.755552662	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214188613	5	6345894	C	T	-	-	-	-	-	-	20	0	0	54	15	27.77777778	0	0	NA	0	0	NA	2.20E-22	3	2	1	1	NA	NA	NA	unphased	1.54040404	0.77020202	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214188709	5	7557767	G	T	ADCY2	CCDS3872.2	r.?	-	-	intronic	27	0	0	65	21	32.30769231	0	0	NA	0	0	NA	2.35E-32	3	2	1	1	NA	NA	NA	unphased	1.791608392	0.895804196	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214188764	5	8341765	C	T	-	-	-	-	-	-	37	0	0	62	10	16.12903226	0	0	NA	0	0	NA	8.29E-13	3	2	1	1	NA	NA	NA	unphased	0.894428152	0.894428152	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214188785	5	8721320	C	T	-	-	-	-	-	-	28	0	0	68	11	16.17647059	0	0	NA	0	0	NA	5.76E-14	3	2	1	1	NA	NA	NA	unphased	0.897058824	0.897058824	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214188811	5	9000809	G	T	-	-	-	-	-	-	40	0	0	71	20	28.16901408	0	0	NA	0	0	NA	1.68E-29	3	2	1	1	NA	NA	NA	unphased	1.562099872	0.781049936	2	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214188819	5	9117586	G	T	SEMA5A	CCDS3875.1	r.?	-	-	intronic	29	0	0	81	13	16.04938272	0	0	NA	0	0	NA	3.34E-16	3	2	1	1	NA	NA	NA	unphased	0.890011223	0.890011223	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214189032	5	12240251	C	T	-	-	-	-	-	-	41	0	0	46	8	17.39130435	0	0	NA	0	0	NA	8.61E-11	3	2	1	1	NA	NA	NA	unphased	0.964426877	0.964426877	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214189110	5	13520530	C	T	-	-	-	-	-	-	7	0	0	65	27	41.53846154	0	0	NA	0	0	NA	8.98E-45	3	2	1	1	NA	NA	NA	unphased	2.303496503	1.151748252	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214189274	5	15998284	A	T	-	-	-	-	-	-	25	0	0	62	27	43.5483871	0	0	NA	0	0	NA	1.76E-45	3	2	1	1	NA	NA	NA	unphased	2.414956012	1.207478006	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214189437	5	18007238	A	T	-	-	-	-	-	-	28	0	0	57	16	28.07017544	0	0	NA	2	0	0	7.28E-24	3	2	1	1	NA	NA	NA	unphased	1.55661882	0.77830941	2	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214189440	5	18109954	C	T	-	-	-	-	-	-	43	0	0	53	16	30.18867925	0	0	NA	0	0	NA	1.90E-24	3	2	1	1	NA	NA	NA	unphased	1.674099485	0.837049743	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214189524	5	19021397	C	T	-	-	-	-	-	-	21	0	0	40	8	20	0	0	NA	0	0	NA	2.61E-11	3	2	1	1	NA	NA	NA	unphased	1.109090909	1.109090909	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214189538	5	19364641	A	T	-	-	-	-	-	-	29	0	0	48	8	16.66666667	0	0	NA	0	0	NA	1.23E-10	3	2	1	1	NA	NA	NA	unphased	0.924242424	0.924242424	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214189539	5	19364643	A	T	-	-	-	-	-	-	31	0	0	49	8	16.32653061	0	0	NA	0	0	NA	1.47E-10	3	2	1	1	NA	NA	NA	unphased	0.905380334	0.905380334	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214189615	5	20522289	G	T	CDH18	CCDS3652.1	r.?	-	-	intronic	27	0	0	49	12	24.48979592	0	0	NA	0	0	NA	1.90E-17	3	2	1	1	NA	NA	NA	unphased	1.358070501	1.358070501	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214189923	5	24011029	G	T	-	-	-	-	-	-	38	0	0	64	16	25	0	0	NA	0	0	NA	5.94E-23	3	2	1	1	NA	NA	NA	unphased	1.386363636	1.386363636	1	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214189950	5	24460352	G	T	-	-	-	-	-	-	35	0	0	44	4	9.090909091	0	0	NA	0	0	NA	7.23E-05	3	2	1	1	NA	NA	NA	unphased	0.504132231	0.504132231	1	0.02	0.98	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214189965	5	24589244	A	T	CDH10	CCDS3892.1	r.?	-	-	intronic	28	0	0	49	19	38.7755102	0	0	NA	0	0	NA	3.12E-31	3	2	1	1	NA	NA	NA	unphased	2.150278293	1.075139147	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214189999	5	24994481	A	T	-	-	-	-	-	-	24	0	0	62	6	9.677419355	0	0	NA	0	0	NA	7.56E-07	3	2	1	1	NA	NA	NA	unphased	0.536656891	0.536656891	1	0.01875	0.98125	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214190081	5	26189749	C	T	-	-	-	-	-	-	41	0	0	62	8	12.90322581	0	0	NA	0	0	NA	1.04E-09	3	2	1	1	NA	NA	NA	unphased	0.715542522	0.715542522	1	0.0025	0.99625	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214190102	5	26556249	G	T	-	-	-	-	-	-	29	0	0	60	12	20	0	0	NA	0	0	NA	2.74E-16	3	2	1	1	NA	NA	NA	unphased	1.109090909	1.109090909	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214190116	5	26799352	C	T	-	-	-	-	-	-	10	0	0	17	6	35.29411765	0	0	NA	0	0	NA	1.84E-10	3	2	1	1	NA	NA	NA	unphased	1.957219251	1.957219251	1	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214190146	5	27347894	C	T	-	-	-	-	-	-	41	0	0	54	9	16.66666667	0	0	NA	0	0	NA	8.48E-12	3	2	1	1	NA	NA	NA	unphased	0.924242424	0.924242424	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214190767	5	35609462	G	T	-	-	-	-	-	-	36	0	0	73	12	16.43835616	0	0	NA	0	0	NA	3.39E-15	3	2	1	1	NA	NA	NA	unphased	0.911581569	0.911581569	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214191086	5	41074696	C	T	HEATR7B2	CCDS47202.1	r.?	-	-	upstream	21	0	0	39	6	15.38461538	0	0	NA	0	0	NA	4.43E-08	3	2	1	1	NA	NA	NA	unphased	0.853146853	0.853146853	1	0.00375	0.99625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214191112	5	41682618	G	T	-	-	-	-	-	-	38	0	0	60	11	18.33333333	0	0	NA	0	0	NA	1.34E-14	3	2	1	1	NA	NA	NA	unphased	1.016666667	1.016666667	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214191136	5	42389648	A	T	-	-	-	-	-	-	25	0	0	62	21	33.87096774	0	0	NA	0	0	NA	7.22E-33	3	2	1	1	NA	NA	NA	unphased	1.87829912	0.93914956	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214191240	5	44398260	C	T	-	-	-	-	-	-	30	0	0	68	22	32.35294118	0	0	NA	0	0	NA	7.67E-34	3	2	1	1	NA	NA	NA	unphased	1.794117647	0.897058824	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214191928	5	51711370	C	T	-	-	-	-	-	-	31	0	0	36	16	44.44444444	0	0	NA	0	0	NA	1.01E-27	1.761129122	1	0	0.238870878	2	0	0.761129122	unphased	1.914037185	1.08682388	1.761129122	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214192203	5	57212971	C	T	-	-	-	-	-	-	31	0	0	47	17	36.17021277	0	0	NA	0	0	NA	1.81E-27	1.761129122	1	0	0.238870878	2	0	0.761129122	unphased	1.557700475	0.884489647	1.761129122	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214192222	5	57577835	A	T	-	-	-	-	-	-	27	0	0	49	16	32.65306122	0	0	NA	0	0	NA	4.37E-25	1.761129122	1	0	0.238870878	2	0	0.761129122	unphased	1.406231402	1.406231402	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214193042	5	76259379	C	T	CRHBP	CCDS4034.1	r.?	-	-	intronic	34	0	0	73	29	39.7260274	0	0	NA	0	0	NA	2.86E-47	1.754521149	1	0	0.245478851	2	0	0.754521149	unphased	1.708209522	0.973604407	1.754521149	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214193587	5	88417708	G	T	-	-	-	-	-	-	9	0	0	49	15	30.6122449	1	0	0	0	0	NA	4.10E-23	1.754521149	1	0	0.245478851	2	0	0.754521149	unphased	1.31631909	1.31631909	1	0	0.99625	0.00375	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214193626	5	89139429	C	T	-	-	-	-	-	-	30	0	0	58	8	13.79310345	0	0	NA	0	0	NA	5.99E-10	1.754521149	1	0	0.245478851	2	0	0.754521149	unphased	0.593100096	0.786061593	0.754521149	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214193685	5	90612905	C	T	-	-	-	-	-	-	26	0	0	38	12	31.57894737	0	0	NA	0	0	NA	5.86E-19	1.754521149	1	0	0.245478851	2	0	0.754521149	unphased	1.357887061	1.357887061	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214193842	5	95601313	G	T	-	-	-	-	-	-	33	0	0	62	27	43.5483871	0	0	NA	0	0	NA	1.76E-45	1.754521149	1	0	0.245478851	2	0	0.754521149	unphased	1.87257006	1.067282695	1.754521149	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214193932	5	97131195	G	T	-	-	-	-	-	-	38	0	0	40	19	47.5	0	0	NA	0	0	NA	2.27E-33	1.754521149	1	0	0.245478851	2	0	0.754521149	unphased	2.042488455	1.164128718	1.754521149	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214194163	5	101051999	A	T	-	-	-	-	-	-	14	0	0	50	19	38	0	0	NA	0	0	NA	5.00E-31	1.754521149	1	0	0.245478851	2	0	0.754521149	unphased	1.633990764	0.931302974	1.754521149	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214194169	5	101157648	C	T	-	-	-	-	-	-	49	0	0	59	11	18.6440678	0	0	NA	0	0	NA	1.10E-14	1.754521149	1	0	0.245478851	2	0	0.754521149	unphased	0.801690384	1.062515458	0.754521149	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214194180	5	101356927	C	T	-	-	-	-	-	-	30	0	0	54	15	27.77777778	0	0	NA	0	0	NA	2.20E-22	1.754521149	1	0	0.245478851	2	0	0.754521149	unphased	1.194437693	1.194437693	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214194495	5	108068556	C	T	AC034207.1	ENST00000500295	r.?	-	-	downstream	34	0	0	41	6	14.63414634	0	0	NA	0	0	NA	6.05E-08	1.754521149	1	0	0.245478851	2	0	0.754521149	unphased	0.629264736	0.833992177	0.754521149	0.00375	0.99625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214194974	5	119153967	A	T	-	-	-	-	-	-	21	0	0	47	4	8.510638298	0	0	NA	0	0	NA	9.39E-05	1.788223154	1	0	0.211776846	2	0	0.788223154	unphased	0.368823634	0.467917787	0.788223154	0.02875	0.97125	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214195155	5	123382812	C	T	-	-	-	-	-	-	31	0	0	53	17	32.0754717	0	0	NA	0	0	NA	2.08E-26	1.788223154	1	0	0.211776846	2	0	0.788223154	unphased	1.390047564	1.390047564	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214195156	5	123394684	C	T	-	-	-	-	-	-	29	0	0	58	5	8.620689655	0	0	NA	0	0	NA	1.15E-05	1.788223154	1	0	0.211776846	2	0	0.788223154	unphased	0.373592905	0.473968448	0.788223154	0.06375	0.93625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214195668	5	134486589	C	T	-	-	-	-	-	-	12	0	0	57	28	49.12280702	2	0	0	0	0	NA	4.87E-49	1.788223154	1	0	0.211776846	2	0	0.788223154	unphased	2.128824133	1.190468946	1.788223154	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214195726	5	136054288	C	T	-	-	-	-	-	-	37	0	0	53	14	26.41509434	0	0	NA	0	0	NA	1.22E-20	1.788223154	1	0	0.211776846	2	0	0.788223154	unphased	1.144745053	1.144745053	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214195744	5	136419592	C	T	SPOCK1	CCDS4191.1	r.?	-	-	intronic	29	0	0	37	17	45.94594595	0	0	NA	0	0	NA	1.10E-29	1.788223154	1	0	0.211776846	2	0	0.788223154	unphased	1.991149213	1.113479159	1.788223154	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214195852	5	138188122	C	T	CTNNA1	CCDS34243.1	r.?	-	-	intronic	21	0	0	41	6	14.63414634	1	0	0	0	0	NA	6.05E-08	1.788223154	1	0	0.211776846	2	0	0.788223154	unphased	0.634196737	0.804590341	0.788223154	0.00375	0.99625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214196010	5	141561903	C	T	-	-	-	-	-	-	17	0	0	43	16	37.20930233	0	0	NA	0	0	NA	3.56E-26	1.788223154	1	0	0.211776846	2	0	0.788223154	unphased	1.612531237	0.901750564	1.788223154	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214196560	5	153645275	C	T	GALNT10	CCDS4325.1	r.?	-	-	intronic	28	0	0	65	8	12.30769231	0	0	NA	0	0	NA	1.53E-09	1.788223154	1	0	0.211776846	2	0	0.788223154	unphased	0.533375717	0.676681108	0.788223154	0.01	0.99	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214196647	5	155751677	G	T	SGCD	CCDS47325.1	r.?	-	-	upstream	31	0	0	53	21	39.62264151	0	0	NA	0	0	NA	1.30E-34	1.788223154	1	0	0.211776846	2	0	0.788223154	unphased	1.717117579	0.960236744	1.788223154	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214196903	5	161179466	C	T	-	-	-	-	-	-	36	0	0	61	7	11.47540984	0	0	NA	0	0	NA	2.69E-08	1.788223154	1	0	0.211776846	2	0	0.788223154	unphased	0.497307277	0.630921934	0.788223154	0.01	0.99	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214197085	5	164620576	C	T	-	-	-	-	-	-	48	0	0	54	20	37.03703704	0	0	NA	0	0	NA	2.61E-32	1.788223154	1	0	0.211776846	2	0	0.788223154	unphased	1.605065815	0.897575793	1.788223154	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214197142	5	166163757	C	T	-	-	-	-	-	-	14	0	0	51	19	37.25490196	0	0	NA	0	0	NA	7.94E-31	1.788223154	1	0	0.211776846	2	0	0.788223154	unphased	1.614507378	0.90285565	1.788223154	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214197164	5	166493854	C	T	-	-	-	-	-	-	21	0	0	48	21	43.75	0	0	NA	0	0	NA	9.35E-36	1.788223154	1	0	0.211776846	2	0	0.788223154	unphased	1.895983994	1.060261405	1.788223154	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214197440	5	170582665	G	T	RANBP17	CCDS34287.1	r.?	-	-	intronic	40	0	0	76	21	27.63157895	0	0	NA	0	0	NA	1.07E-30	4.20005043	4	0	0.79994957	4	1	0.20005043	unphased	1.863889533	1.035523197	1.79994957	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214197746	5	173749967	C	T	-	-	-	-	-	-	31	0	0	66	40	60.60606061	0	0	NA	0	0	NA	1.32E-74	4.20005043	4	0	0.79994957	4	1	0.20005043	unphased	4.088184833	1.022046208	4	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214197985	5	175767073	C	T	C5orf25	CCDS4398.2	r.?	-	-	intronic	35	0	0	80	29	36.25	0	0	NA	0	0	NA	7.59E-46	4.20005043	4	0	0.79994957	4	1	0.20005043	unphased	2.445245554	0.873317712	2.79994957	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214198018	5	176205126	C	T	-	-	-	-	-	-	22	0	0	92	50	54.34782609	0	0	NA	0	0	NA	2.10E-89	4.20005043	4	0	0.79994957	4	1	0.20005043	unphased	3.666035313	0.964758938	3.79994957	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214198267	5	178107156	G	T	-	-	-	-	-	-	17	0	0	81	45	55.55555556	0	0	NA	0	0	NA	3.10E-81	4.20005043	4	0	0.79994957	4	1	0.20005043	unphased	3.747502764	0.986198026	3.79994957	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214198631	6	422749	G	T	ENSG00000237960	ENST00000449432	r.?	-	-	intronic	40	0	0	68	18	26.47058824	0	0	NA	0	0	NA	3.83E-26	4	2	2	1	NA	NA	NA	unphased	1.732620321	0.86631016	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214198652	6	737502	C	T	-	-	-	-	-	-	21	0	0	66	8	12.12121212	0	0	NA	0	0	NA	1.73E-09	4	2	2	1	NA	NA	NA	unphased	0.79338843	0.79338843	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214198919	6	4149520	G	T	-	-	-	-	-	-	21	0	0	63	22	34.92063492	0	0	NA	0	0	NA	1.03E-34	4	2	2	1	NA	NA	NA	unphased	2.285714286	1.142857143	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214198950	6	4738203	C	T	CDYL	ENST00000328908	r.?	-	-	intronic	39	0	0	63	20	31.74603175	0	0	NA	0	0	NA	1.05E-30	4	2	2	1	NA	NA	NA	unphased	2.077922078	1.038961039	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214199081	6	6723034	C	T	AL031123.2	ENST00000501751	r.?	-	-	upstream	32	0	0	69	9	13.04347826	0	0	NA	0	0	NA	8.45E-11	3.560177833	2	1	0.439822167	2	2	0.560177833	unphased	0.796386832	0.796386832	1	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214199233	6	7928165	C	T	-	-	-	-	-	-	18	0	0	61	10	16.39344262	0	0	NA	0	0	NA	6.98E-13	3.560177833	2	1	0.439822167	2	2	0.560177833	unphased	1.000923341	1.000923341	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214199489	6	10919002	C	T	SYCP2L	CCDS43423.1	r.?	-	-	intronic	21	0	0	73	22	30.1369863	0	0	NA	0	0	NA	4.79E-33	3.560177833	2	1	0.439822167	2	2	0.560177833	unphased	1.840053593	0.920026797	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214199713	6	13665135	C	T	RANBP9	CCDS4529.1	r.?	-	-	intronic	32	0	0	75	22	29.33333333	0	0	NA	0	0	NA	9.55E-33	3.560177833	2	1	0.439822167	2	2	0.560177833	unphased	1.790985498	0.895492749	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214199743	6	14027881	C	T	-	-	-	-	-	-	34	0	0	85	27	31.76470588	0	0	NA	0	0	NA	6.20E-41	3.560177833	2	1	0.439822167	2	2	0.560177833	unphased	1.939436167	0.969718084	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214199927	6	15862372	C	T	-	-	-	-	-	-	18	0	0	76	23	30.26315789	0	0	NA	0	0	NA	1.58E-34	3.560177833	2	1	0.439822167	2	2	0.560177833	unphased	1.847757167	0.923878584	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214200414	6	20933025	A	T	CDKAL1	CCDS4546.1	r.?	-	-	intronic	31	0	0	62	18	29.03225806	0	0	NA	0	0	NA	5.72E-27	3.560177833	2	1	0.439822167	2	2	0.560177833	unphased	1.772602948	0.886301474	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214200571	6	22229780	C	T	-	-	-	-	-	-	27	0	0	68	17	25	0	0	NA	0	0	NA	2.69E-24	3.560177833	2	1	0.439822167	2	2	0.560177833	unphased	1.526408095	1.060136543	1.439822167	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214200634	6	23179003	C	T	-	-	-	-	-	-	22	0	0	65	21	32.30769231	0	0	NA	0	0	NA	2.35E-32	3.560177833	2	1	0.439822167	2	2	0.560177833	unphased	1.972588922	0.986294461	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214200771	6	24489167	C	T	GPLD1	CCDS4553.1	r.?	-	-	intronic	16	0	0	78	28	35.8974359	254	3	1.181102362	213	73	34.27230047	3.57E-44	3.560177833	2	1	0.439822167	2	2	0.560177833	unphased	2.191765469	1.095882735	2	0	1	0	2	1	8.88E-111	0.135620052	YES	1_1	somatic	custom.pulldown.HiSeq
1352322	PD9768b	1214200799	6	24839540	C	T	FAM65B	CCDS47383.1	r.?	-	-	intronic	28	0	0	62	13	20.96774194	0	0	NA	0	0	NA	8.08E-18	3.560177833	2	1	0.439822167	2	2	0.560177833	unphased	1.280213241	1.280213241	1	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214200831	6	25256630	C	T	-	-	-	-	-	-	20	0	0	88	19	21.59090909	0	0	NA	0	0	NA	1.22E-25	3.560177833	2	1	0.439822167	2	2	0.560177833	unphased	1.318261536	1.318261536	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214200893	6	25934352	C	T	SLC17A2	CCDS4567.1	r.?	-	-	upstream	26	0	0	77	8	10.38961039	0	0	NA	0	0	NA	6.05E-09	3.560177833	2	1	0.439822167	2	2	0.560177833	unphased	0.634351416	1.132410779	0.560177833	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214201071	6	27901418	C	T	-	-	-	-	-	-	38	0	0	65	19	29.23076923	0	0	NA	0	0	NA	1.89E-28	3.560177833	2	1	0.439822167	2	2	0.560177833	unphased	1.784723311	0.892361655	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214202068	6	35682396	C	T	FKBP5	CCDS4808.1	r.?	-	-	intronic	15	0	0	53	6	11.32075472	0	0	NA	0	0	NA	2.93E-07	3.560177833	2	1	0.439822167	2	2	0.560177833	unphased	0.691203665	1.233900424	0.560177833	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214202074	6	35749154	C	T	C6orf127	CCDS43456.1	r.?	-	-	intronic	19	0	0	64	6	9.375	0	0	NA	0	0	NA	9.14E-07	3.560177833	2	1	0.439822167	2	2	0.560177833	unphased	0.572403035	1.021823789	0.560177833	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214202398	6	39458085	G	T	KIF6	CCDS4844.1	r.?	-	-	intronic	33	0	0	87	20	22.98850575	0	0	NA	0	0	NA	1.65E-27	3.560177833	2	1	0.439822167	2	2	0.560177833	unphased	1.40359365	1.40359365	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214202413	6	39677507	C	T	KIF6	CCDS4844.1	r.?	-	-	intronic	24	0	0	82	22	26.82926829	0	0	NA	0	0	NA	9.09E-32	3.560177833	2	1	0.439822167	2	2	0.560177833	unphased	1.638096492	1.137707509	1.439822167	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214202521	6	41520113	C	T	FOXP4	CCDS34447.1	r.?	-	-	intronic	10	0	0	73	17	23.28767123	0	0	NA	0	0	NA	1.03E-23	3.560177833	2	1	0.439822167	2	2	0.560177833	unphased	1.421859595	1.421859595	1	0	0.99625	0.00375	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214202650	6	42810914	G	T	KIAA0240	CCDS34451.1	r.?	-	-	intronic	9	0	0	58	6	10.34482759	0	0	NA	0	0	NA	5.06E-07	3.560177833	2	1	0.439822167	2	2	0.560177833	unphased	0.631617143	1.127529698	0.560177833	0.00125	0.99625	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214203473	6	55209187	C	T	GFRAL	CCDS4957.1	r.?	-	-	intronic	35	0	0	57	17	29.8245614	0	0	NA	0	0	NA	8.82E-26	3.560177833	2	1	0.439822167	2	2	0.560177833	unphased	1.820978078	0.910489039	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214203553	6	56946897	C	T	ZNF451	ENST00000515290	r.?	-	-	upstream	34	0	0	61	6	9.836065574	0	0	NA	0	0	NA	6.85E-07	3.560177833	2	1	0.439822167	2	2	0.560177833	unphased	0.600554004	1.072077418	0.560177833	0.00125	0.9975	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214203949	6	57983276	C	T	-	-	-	-	-	-	32	0	0	65	18	27.69230769	0	0	NA	0	0	NA	1.52E-26	3.560177833	2	1	0.439822167	2	2	0.560177833	unphased	1.690790505	0.845395252	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214204197	6	62830534	G	T	KHDRBS2	CCDS4963.1	r.?	-	-	intronic	45	0	0	73	18	24.65753425	0	0	NA	0	0	NA	1.62E-25	3.560177833	2	1	0.439822167	2	2	0.560177833	unphased	1.505498395	1.045614124	1.439822167	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214204284	6	64238539	G	T	-	-	-	-	-	-	17	0	0	47	11	23.40425532	0	0	NA	0	0	NA	7.21E-16	2.563226083	1	1	0.436773917	2	1	0.563226083	unphased	1.195648658	1.195648658	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214204399	6	66430941	C	T	-	-	-	-	-	-	36	0	0	52	6	11.53846154	0	0	NA	0	0	NA	2.61E-07	2.563226083	1	1	0.436773917	2	1	0.563226083	unphased	0.589463149	1.046583543	0.563226083	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214204692	6	70911075	C	T	COL19A1	CCDS4970.1	r.?	-	-	intronic	34	0	0	73	12	16.43835616	0	0	NA	0	0	NA	3.39E-15	2.563226083	1	1	0.436773917	2	1	0.563226083	unphased	0.839783117	0.839783117	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214204793	6	73151838	C	T	-	-	-	-	-	-	36	0	0	72	19	26.38888889	0	0	NA	0	0	NA	1.75E-27	2.563226083	1	1	0.436773917	2	1	0.563226083	unphased	1.348124055	1.348124055	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214204867	6	74312168	A	T	SLC17A5	CCDS4981.1	r.?	-	-	intronic	9	0	0	36	3	8.333333333	0	0	NA	0	0	NA	0.000788827	2.563226083	1	1	0.436773917	2	1	0.563226083	unphased	0.425723386	0.755865892	0.563226083	0.00875	0.99125	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214204989	6	76720144	A	T	IMPG1	CCDS4985.1	r.?	-	-	intronic	29	0	0	52	15	28.84615385	0	0	NA	0	0	NA	1.15E-22	2.563226083	1	1	0.436773917	2	1	0.563226083	unphased	1.473657874	1.473657874	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214205284	6	81725238	G	T	-	-	-	-	-	-	47	0	0	54	9	16.66666667	0	0	NA	0	0	NA	8.48E-12	2.563226083	1	1	0.436773917	2	1	0.563226083	unphased	0.851446771	0.851446771	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214205341	6	82687647	C	T	-	-	-	-	-	-	26	0	0	66	12	18.18181818	0	0	NA	0	0	NA	9.36E-16	2.563226083	1	1	0.436773917	2	1	0.563226083	unphased	0.928851023	0.928851023	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214205543	6	85903746	C	T	-	-	-	-	-	-	30	0	0	65	10	15.38461538	77	0	0	69	4	5.797101449	1.36E-12	2.563226083	1	1	0.436773917	2	1	0.563226083	unphased	0.785950866	0.785950866	1	0.00625	0.99375	0	2	1	0.000416985	1	YES	1_1	somatic	custom.pulldown.HiSeq
1352322	PD9768b	1214205623	6	87330891	A	T	-	-	-	-	-	-	28	0	0	49	19	38.7755102	0	0	NA	0	0	NA	3.12E-31	2.563226083	1	1	0.436773917	2	1	0.563226083	unphased	1.980916978	1.267198008	1.563226083	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214205665	6	87926407	A	T	ZNF292	CCDS47457.1	r.?	-	-	intronic	26	0	0	61	21	34.42622951	0	0	NA	0	0	NA	4.80E-33	2.563226083	1	1	0.436773917	2	1	0.563226083	unphased	1.758726118	1.125061907	1.563226083	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214205921	6	92088820	C	T	-	-	-	-	-	-	37	0	0	70	21	30	0	0	NA	0	0	NA	1.45E-31	2.563226083	1	1	0.436773917	2	1	0.563226083	unphased	1.532604189	0.98041109	1.563226083	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214206167	6	96572188	C	T	FUT9	CCDS5033.1	r.?	-	-	intronic	13	0	0	45	6	13.33333333	0	0	NA	0	0	NA	1.08E-07	2.563226083	1	1	0.436773917	2	1	0.563226083	unphased	0.681157417	1.209385428	0.563226083	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214206267	6	98801052	C	T	-	-	-	-	-	-	48	0	0	50	16	32	0	0	NA	0	0	NA	6.40E-25	2.563226083	1	1	0.436773917	2	1	0.563226083	unphased	1.634777801	1.04577183	1.563226083	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214206297	6	99490262	G	T	-	-	-	-	-	-	42	0	0	60	17	28.33333333	0	0	NA	0	0	NA	2.41E-25	2.563226083	1	1	0.436773917	2	1	0.563226083	unphased	1.447459511	1.447459511	1	0	0.99625	0.00375	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214206367	6	100416639	A	T	MCHR2	CCDS5044.1	r.?	-	-	intronic	39	0	0	67	26	38.80597015	0	0	NA	0	0	NA	3.31E-42	2.563226083	1	1	0.436773917	2	1	0.563226083	unphased	1.98247308	1.26819345	1.563226083	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214206452	6	102021865	C	T	GRIK2	CCDS5049.1	r.?	-	-	intronic	35	0	0	40	9	22.5	0	0	NA	0	0	NA	4.64E-13	2.563226083	1	1	0.436773917	2	1	0.563226083	unphased	1.149453141	1.149453141	1	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214206485	6	102468346	C	T	GRIK2	CCDS5049.1	r.?	-	-	intronic	32	0	0	53	9	16.98113208	0	0	NA	0	0	NA	7.10E-12	2.563226083	1	1	0.436773917	2	1	0.563226083	unphased	0.867511805	0.867511805	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214206489	6	102626946	G	T	-	-	-	-	-	-	38	0	0	52	24	46.15384615	0	0	NA	0	0	NA	2.22E-41	2.563226083	1	1	0.436773917	2	1	0.563226083	unphased	2.357852598	1.508324754	1.563226083	0	0.98875	0.01125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214206507	6	103261861	C	T	-	-	-	-	-	-	31	0	0	61	15	24.59016393	0	0	NA	0	0	NA	1.73E-21	2.563226083	1	1	0.436773917	2	1	0.563226083	unphased	1.256232941	1.256232941	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214206516	6	103484066	G	T	-	-	-	-	-	-	37	0	0	65	13	20	0	0	NA	0	0	NA	1.57E-17	2.563226083	1	1	0.436773917	2	1	0.563226083	unphased	1.021736126	1.021736126	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214206537	6	103860015	A	T	-	-	-	-	-	-	30	0	0	61	26	42.62295082	0	0	NA	0	0	NA	1.53E-43	2.563226083	1	1	0.436773917	2	1	0.563226083	unphased	2.177470432	1.39293379	1.563226083	0	0.99625	0.00375	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214206555	6	104588157	G	T	-	-	-	-	-	-	26	0	0	50	8	16	0	0	NA	0	0	NA	1.74E-10	2.563226083	1	1	0.436773917	2	1	0.563226083	unphased	0.817388901	0.817388901	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214207115	6	114332702	C	T	-	-	-	-	-	-	38	0	0	56	11	19.64285714	0	0	NA	0	0	NA	5.91E-15	2.563226083	1	1	0.436773917	2	1	0.563226083	unphased	1.003490838	1.003490838	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214207183	6	115409761	A	T	-	-	-	-	-	-	22	0	0	45	8	17.77777778	0	0	NA	0	0	NA	7.14E-11	2.563226083	1	1	0.436773917	2	1	0.563226083	unphased	0.908209889	0.908209889	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214207200	6	115715092	C	T	-	-	-	-	-	-	31	0	0	64	20	31.25	0	0	NA	0	0	NA	1.52E-30	2.563226083	1	1	0.436773917	2	1	0.563226083	unphased	1.596462696	1.021261553	1.563226083	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214207365	6	118531832	G	T	SLC35F1	CCDS34524.1	r.?	-	-	intronic	36	0	0	90	24	26.66666667	0	0	NA	0	0	NA	1.91E-34	3.675145481	2	1	0.324854519	2	2	0.675145481	unphased	1.658826674	0.829413337	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214207390	6	118882996	C	T	C6orf204	CCDS43498.1	r.?	-	-	intronic	50	0	0	75	14	18.66666667	0	0	NA	0	0	NA	2.57E-18	3.675145481	2	1	0.324854519	2	2	0.675145481	unphased	1.161178672	1.161178672	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214207524	6	120524324	C	T	-	-	-	-	-	-	34	0	0	61	7	11.47540984	0	0	NA	0	0	NA	2.69E-08	3.675145481	2	1	0.324854519	2	2	0.675145481	unphased	0.713839347	1.057311895	0.675145481	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214207792	6	123702576	A	T	TRDN	ENST00000334268	r.?	-	-	intronic	32	0	0	74	17	22.97297297	0	0	NA	0	0	NA	1.34E-23	3.675145481	2	1	0.324854519	2	2	0.675145481	unphased	1.429056763	1.429056763	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214207798	6	123767156	A	T	TRDN	ENST00000334268	r.?	-	-	intronic	28	0	0	54	9	16.66666667	0	0	NA	0	0	NA	8.48E-12	3.675145481	2	1	0.324854519	2	2	0.675145481	unphased	1.036766671	1.036766671	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214207814	6	123999218	G	T	-	-	-	-	-	-	28	0	0	85	11	12.94117647	0	0	NA	0	0	NA	7.42E-13	3.675145481	2	1	0.324854519	2	2	0.675145481	unphased	0.805018827	1.192363498	0.675145481	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214207833	6	124117985	G	T	-	-	-	-	-	-	37	0	0	66	18	27.27272727	0	0	NA	0	0	NA	2.08E-26	3.675145481	2	1	0.324854519	2	2	0.675145481	unphased	1.69652728	0.84826364	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214207861	6	124763164	C	T	NKAIN2	CCDS34526.1	r.?	-	-	intronic	26	0	0	72	7	9.722222222	0	0	NA	0	0	NA	8.66E-08	3.675145481	2	1	0.324854519	2	2	0.675145481	unphased	0.604780558	0.895778133	0.675145481	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214207961	6	126474946	G	T	-	-	-	-	-	-	36	0	0	88	19	21.59090909	0	0	NA	0	0	NA	1.22E-25	3.675145481	2	1	0.324854519	2	2	0.675145481	unphased	1.343084097	1.343084097	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214208006	6	127234330	A	T	-	-	-	-	-	-	35	0	0	65	11	16.92307692	0	0	NA	0	0	NA	3.41E-14	3.675145481	2	1	0.324854519	2	2	0.675145481	unphased	1.052716927	1.052716927	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214208015	6	127291078	C	T	-	-	-	-	-	-	22	0	0	65	5	7.692307692	0	0	NA	0	0	NA	2.01E-05	3.675145481	2	1	0.324854519	2	2	0.675145481	unphased	0.478507694	0.708747534	0.675145481	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214208021	6	127362210	G	T	-	-	-	-	-	-	43	0	0	85	6	7.058823529	0	0	NA	0	0	NA	4.87E-06	3.675145481	2	1	0.324854519	2	2	0.675145481	unphased	0.439101178	0.65038009	0.675145481	0.01	0.99	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214208127	6	128984394	C	T	-	-	-	-	-	-	25	0	0	61	18	29.50819672	0	0	NA	0	0	NA	4.08E-27	3.675145481	2	1	0.324854519	2	2	0.675145481	unphased	1.835586893	0.917793446	2	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214208235	6	130788072	C	T	-	-	-	-	-	-	30	0	0	59	20	33.89830508	0	0	NA	0	0	NA	2.21E-31	3.675145481	2	1	0.324854519	2	2	0.675145481	unphased	2.108677975	1.054338987	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214208250	6	131104144	C	T	-	-	-	-	-	-	41	0	0	65	12	18.46153846	0	0	NA	0	0	NA	7.70E-16	3.675145481	2	1	0.324854519	2	2	0.675145481	unphased	1.148418466	1.148418466	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214208256	6	131166783	C	T	EPB41L2	CCDS5141.1	r.?	-	-	intronic	33	0	0	62	9	14.51612903	0	0	NA	0	0	NA	3.12E-11	3.675145481	2	1	0.324854519	2	2	0.675145481	unphased	0.902990326	0.902990326	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214208300	6	131646857	C	T	-	-	-	-	-	-	12	0	0	59	12	20.33898305	0	0	NA	0	0	NA	2.20E-16	3.675145481	2	1	0.324854519	2	2	0.675145481	unphased	1.265206785	1.265206785	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214208320	6	131845289	C	T	-	-	-	-	-	-	24	0	0	74	12	16.21621622	0	0	NA	0	0	NA	4.02E-15	3.675145481	2	1	0.324854519	2	2	0.675145481	unphased	1.00874595	1.00874595	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214208973	6	142007733	C	T	-	-	-	-	-	-	40	0	0	55	18	32.72727273	0	0	NA	0	0	NA	4.61E-28	3.675145481	2	1	0.324854519	2	2	0.675145481	unphased	2.035832736	1.017916368	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214209435	6	149518967	C	T	-	-	-	-	-	-	30	0	0	77	22	28.57142857	0	0	NA	0	0	NA	1.86E-32	3.675145481	2	1	0.324854519	2	2	0.675145481	unphased	1.777314293	0.888657147	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214209465	6	149871678	C	T	PPIL4	CCDS34550.1	r.?	-	-	upstream	35	0	0	84	28	33.33333333	0	0	NA	0	0	NA	4.34E-43	3.675145481	2	1	0.324854519	2	2	0.675145481	unphased	2.073533342	1.036766671	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214209657	6	151615579	C	T	AKAP12	CCDS5229.1	r.?	-	-	intronic	29	0	0	69	13	18.84057971	0	0	NA	0	0	NA	3.64E-17	3.675145481	2	1	0.324854519	2	2	0.675145481	unphased	1.171997106	1.171997106	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214209711	6	152311808	G	T	ESR1	CCDS5234.1	r.?	-	-	intronic	37	0	0	85	31	36.47058824	0	0	NA	0	0	NA	5.32E-49	3.675145481	2	1	0.324854519	2	2	0.675145481	unphased	2.268689421	1.134344711	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214209877	6	154340220	C	T	OPRM1	CCDS47503.1	r.?	-	-	intronic	27	0	0	86	24	27.90697674	0	0	NA	0	0	NA	5.49E-35	3.675145481	2	1	0.324854519	2	2	0.675145481	unphased	1.735981403	0.867990701	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214210536	6	161367811	G	T	-	-	-	-	-	-	44	0	0	70	29	41.42857143	0	0	NA	0	0	NA	6.18E-48	4.7421074	2	2	0.2578926	3	2	0.7421074	unphased	3.019132806	1.101026461	2.7421074	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214210583	6	161865942	A	T	PARK2	CCDS5281.1	r.?	-	-	intronic	10	0	0	68	27	39.70588235	0	0	NA	0	0	NA	4.16E-44	4.7421074	2	2	0.2578926	3	2	0.7421074	unphased	2.893590772	1.055243413	2.7421074	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214211060	6	167422010	C	T	FGFR1OP	CCDS5296.1	r.?	-	-	intronic	17	0	0	74	24	32.43243243	0	0	NA	0	0	NA	8.21E-37	4.7421074	2	2	0.2578926	3	2	0.7421074	unphased	2.363533604	0.861940566	2.7421074	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214211123	6	168043940	C	T	ENSG00000233092	ENST00000439231	r.?	-	-	intronic	34	0	0	75	7	9.333333333	0	0	NA	0	0	NA	1.15E-07	4.7421074	2	2	0.2578926	3	2	0.7421074	unphased	0.680172448	0.916541795	0.7421074	0.00375	0.99625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214211134	6	168168540	C	T	-	-	-	-	-	-	6	0	0	77	10	12.98701299	0	0	NA	0	0	NA	7.90E-12	4.7421074	2	2	0.2578926	3	2	0.7421074	unphased	0.946436616	0.946436616	1	0.00375	0.99625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214211160	6	168583505	A	T	-	-	-	-	-	-	27	0	0	78	11	14.1025641	0	0	NA	0	0	NA	2.79E-13	4.7421074	2	2	0.2578926	3	2	0.7421074	unphased	1.027733095	1.027733095	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214211584	7	1415711	C	T	-	-	-	-	-	-	7	0	0	58	25	43.10344828	0	0	NA	0	0	NA	4.44E-42	1.755712721	1	0	0.244287279	2	0	0.755712721	unphased	1.853951408	1.055953737	1.755712721	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214211680	7	3388588	G	T	SDK1	CCDS34590.1	r.?	-	-	intronic	21	0	0	53	14	26.41509434	0	0	NA	0	0	NA	1.22E-20	1.755712721	1	0	0.244287279	2	0	0.755712721	unphased	1.136157391	1.136157391	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214211705	7	4015503	C	T	SDK1	CCDS34590.1	r.?	-	-	intronic	8	0	0	59	33	55.93220339	0	0	NA	0	0	NA	4.06E-60	1.755712721	1	0	0.244287279	2	0	0.755712721	unphased	2.405737623	1.370234205	1.755712721	0	0.99	0.01	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214212300	7	14930573	C	T	DGKB	CCDS47547.1	r.?	-	-	intronic	38	0	0	57	32	56.14035088	0	0	NA	0	0	NA	2.05E-58	1.755712721	1	0	0.244287279	2	0	0.755712721	unphased	2.414690395	1.375333428	1.755712721	0	0.99625	0.00375	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214212804	7	24955593	G	T	OSBPL3	CCDS5390.1	r.?	-	-	intronic	41	0	0	62	7	11.29032258	0	0	NA	0	0	NA	3.02E-08	1.755712721	1	0	0.244287279	2	0	0.755712721	unphased	0.485615659	0.64259294	0.755712721	0.0125	0.9875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214212998	7	28702780	C	T	CREB5	CCDS5417.1	r.?	-	-	intronic	19	0	0	48	27	56.25	0	0	NA	0	0	NA	1.50E-49	1.755712721	1	0	0.244287279	2	0	0.755712721	unphased	2.419406587	1.378019626	1.755712721	0	0.99375	0.00625	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214213071	7	29753979	C	T	-	-	-	-	-	-	29	0	0	49	23	46.93877551	0	0	NA	0	0	NA	6.14E-40	1.755712721	1	0	0.244287279	2	0	0.755712721	unphased	2.018915247	1.149912069	1.755712721	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214213316	7	35304578	C	T	-	-	-	-	-	-	23	0	0	46	20	43.47826087	0	0	NA	0	0	NA	4.72E-34	1.755712721	1	0	0.244287279	2	0	0.755712721	unphased	1.870072724	1.065135943	1.755712721	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214213402	7	36625372	A	T	AOAH	CCDS5448.1	r.?	-	-	intronic	38	0	0	61	24	39.3442623	0	0	NA	0	0	NA	2.97E-39	1.755712721	1	0	0.244287279	2	0	0.755712721	unphased	1.692262531	0.963860722	1.755712721	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214213438	7	37522177	C	T	-	-	-	-	-	-	29	0	0	54	8	14.81481481	0	0	NA	0	0	NA	3.31E-10	1.755712721	1	0	0.244287279	2	0	0.755712721	unphased	0.637209965	0.843190736	0.755712721	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214214434	7	55472332	A	T	LANCL2	CCDS5517.1	r.?	-	-	intronic	17	0	0	56	29	51.78571429	0	0	NA	0	0	NA	1.21E-51	1.755712721	1	0	0.244287279	2	0	0.755712721	unphased	2.227390191	1.268652989	1.755712721	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214214531	7	56703481	C	T	-	-	-	-	-	-	28	0	0	78	23	29.48717949	0	0	NA	0	0	NA	3.16E-34	4	2	2	1	NA	NA	NA	unphased	1.93006993	0.965034965	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214214616	7	57282998	A	T	-	-	-	-	-	-	13	0	0	60	5	8.333333333	0	0	NA	1	0	0	1.36E-05	4	2	2	1	NA	NA	NA	unphased	0.545454545	0.545454545	1	0.0175	0.9825	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214214632	7	57385411	G	T	-	-	-	-	-	-	28	0	0	79	23	29.11392405	0	0	NA	0	0	NA	4.43E-34	4	2	2	1	NA	NA	NA	unphased	1.905638665	0.952819333	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214214648	7	57554023	C	T	-	-	-	-	-	-	50	0	0	107	21	19.62616822	0	0	NA	0	0	NA	3.13E-27	4	2	2	1	NA	NA	NA	unphased	1.28462192	1.28462192	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214215363	7	57796794	A	T	-	-	-	-	-	-	30	0	0	52	14	26.92307692	0	0	NA	0	0	NA	9.04E-21	4	2	2	1	NA	NA	NA	unphased	1.762237762	0.881118881	2	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214218248	7	62478362	G	T	-	-	-	-	-	-	29	0	0	73	24	32.87671233	0	0	NA	0	0	NA	5.58E-37	4	2	2	1	NA	NA	NA	unphased	2.151930262	1.075965131	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214218362	7	63302801	C	T	-	-	-	-	-	-	7	0	0	32	5	15.625	0	0	NA	0	0	NA	5.62E-07	4	2	2	1	NA	NA	NA	unphased	1.022727273	1.022727273	1	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214219037	7	66915950	C	T	-	-	-	-	-	-	20	0	0	70	15	21.42857143	0	0	NA	0	0	NA	1.70E-20	4	2	2	1	NA	NA	NA	unphased	1.402597403	1.402597403	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214219150	7	67761475	G	T	-	-	-	-	-	-	34	0	0	80	27	33.75	0	0	NA	0	0	NA	8.87E-42	4	2	2	1	NA	NA	NA	unphased	2.209090909	1.104545455	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214219176	7	67938378	A	T	-	-	-	-	-	-	17	0	0	68	21	30.88235294	0	0	NA	0	0	NA	7.15E-32	4	2	2	1	NA	NA	NA	unphased	2.021390374	1.010695187	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214219190	7	68037909	C	T	-	-	-	-	-	-	35	0	0	77	15	19.48051948	0	0	NA	0	0	NA	8.05E-20	4	2	2	1	NA	NA	NA	unphased	1.275088548	1.275088548	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214219342	7	69392485	C	T	AUTS2	CCDS5539.1	r.?	-	-	intronic	9	0	0	65	16	24.61538462	0	0	NA	0	0	NA	7.85E-23	4	2	2	1	NA	NA	NA	unphased	1.611188811	0.805594406	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214219540	7	71664692	C	T	CALN1	CCDS47603.1	r.?	-	-	intronic	23	0	0	74	6	8.108108108	0	0	NA	0	0	NA	2.16E-06	3	2	1	1	NA	NA	NA	unphased	0.44963145	0.44963145	1	0.11875	0.88125	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214219547	7	71686948	C	T	CALN1	CCDS47603.1	r.?	-	-	intronic	14	0	0	71	22	30.98591549	0	0	NA	0	0	NA	2.34E-33	3	2	1	1	NA	NA	NA	unphased	1.718309859	0.85915493	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214219719	7	72894295	C	T	BAZ1B	CCDS5549.1	r.?	-	-	intronic	23	0	0	82	30	36.58536585	0	0	NA	0	0	NA	1.61E-47	3	2	1	1	NA	NA	NA	unphased	2.028824834	1.014412417	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214220048	7	77247125	C	T	PTPN12	CCDS5592.1	r.?	-	-	intronic	32	0	0	78	23	29.48717949	0	0	NA	0	0	NA	3.16E-34	3	2	1	1	NA	NA	NA	unphased	1.635198135	0.817599068	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214220087	7	77570244	G	T	PHTF2	CCDS47622.1	r.?	-	-	intronic	30	0	0	55	17	30.90909091	0	0	NA	1	0	0	4.35E-26	3	2	1	1	NA	NA	NA	unphased	1.714049587	0.857024793	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214220110	7	77738697	C	T	MAGI2	CCDS5594.1	r.?	-	-	intronic	11	0	0	72	13	18.05555556	0	0	NA	0	0	NA	6.58E-17	3	2	1	1	NA	NA	NA	unphased	1.001262626	1.001262626	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214220122	7	77947721	C	T	MAGI2	CCDS5594.1	r.?	-	-	intronic	35	0	0	57	24	42.10526316	0	0	NA	0	0	NA	3.83E-40	3	2	1	1	NA	NA	NA	unphased	2.33492823	1.167464115	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214220180	7	78674905	G	T	MAGI2	CCDS5594.1	r.?	-	-	intronic	23	0	0	51	15	29.41176471	0	0	NA	0	0	NA	8.22E-23	3	2	1	1	NA	NA	NA	unphased	1.631016043	0.815508021	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214220193	7	78883067	C	T	MAGI2	CCDS5594.1	r.?	-	-	intronic	28	0	0	70	30	42.85714286	0	0	NA	0	0	NA	4.25E-50	3	2	1	1	NA	NA	NA	unphased	2.376623377	1.188311688	2	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214220231	7	79509068	G	T	-	-	-	-	-	-	30	0	0	76	12	15.78947368	0	0	NA	0	0	NA	5.63E-15	3	2	1	1	NA	NA	NA	unphased	0.875598086	0.875598086	1	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214220245	7	79777842	A	T	GNAI1	CCDS5595.1	r.?	-	-	intronic	33	0	0	50	5	10	0	0	NA	0	0	NA	5.49E-06	3	2	1	1	NA	NA	NA	unphased	0.554545455	0.554545455	1	0.0225	0.9775	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214220407	7	82551521	C	T	PCLO	CCDS47630.1	r.?	-	-	intronic	28	0	0	69	19	27.53623188	0	0	NA	0	0	NA	6.95E-28	3	2	1	1	NA	NA	NA	unphased	1.527009223	0.763504611	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214220429	7	82873631	G	T	-	-	-	-	-	-	39	0	0	62	14	22.58064516	0	0	NA	0	0	NA	1.42E-19	3	2	1	1	NA	NA	NA	unphased	1.252199413	1.252199413	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214220755	7	89185099	C	T	-	-	-	-	-	-	37	0	0	81	29	35.80246914	0	0	NA	0	0	NA	1.18E-45	3	2	1	1	NA	NA	NA	unphased	1.985409652	0.992704826	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214220837	7	90499759	C	T	CDK14	CCDS5619.1	r.?	-	-	intronic	23	0	0	54	20	37.03703704	0	0	NA	0	0	NA	2.61E-32	3	2	1	1	NA	NA	NA	unphased	2.053872054	1.026936027	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214220903	7	91859103	C	T	KRIT1	CCDS5624.1	r.?	-	-	intronic	37	0	0	66	14	21.21212121	0	0	NA	0	0	NA	3.71E-19	3	2	1	1	NA	NA	NA	unphased	1.17630854	1.17630854	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214221062	7	94308747	G	T	-	-	-	-	-	-	35	0	0	67	21	31.34328358	0	0	NA	0	0	NA	4.96E-32	3	2	1	1	NA	NA	NA	unphased	1.738127544	0.869063772	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214221364	7	98411747	C	T	-	-	-	-	-	-	18	0	0	56	7	12.5	0	0	NA	0	0	NA	1.46E-08	3	2	1	1	NA	NA	NA	unphased	0.693181818	0.693181818	1	0.0075	0.9925	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214221507	7	100526454	C	T	-	-	-	-	-	-	16	0	0	64	23	35.9375	0	0	NA	0	0	NA	1.44E-36	3	2	1	1	NA	NA	NA	unphased	1.992897727	0.996448864	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214221631	7	101675695	C	T	CUX1	CCDS5721.1	r.?	-	-	intronic	20	0	0	51	10	19.60784314	0	0	NA	0	0	NA	1.04E-13	3	2	1	1	NA	NA	NA	unphased	1.087344029	1.087344029	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214221999	7	106181388	G	T	-	-	-	-	-	-	34	0	0	72	10	13.88888889	0	0	NA	0	0	NA	3.95E-12	3	2	1	1	NA	NA	NA	unphased	0.77020202	0.77020202	1	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214222189	7	109142273	C	T	-	-	-	-	-	-	39	0	0	83	36	43.37349398	0	0	NA	0	0	NA	4.75E-60	3	2	1	1	NA	NA	NA	unphased	2.405257393	1.202628697	2	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214222490	7	114738607	C	T	-	-	-	-	-	-	34	0	0	62	23	37.09677419	0	0	NA	0	0	NA	5.90E-37	3	2	1	1	NA	NA	NA	unphased	2.057184751	1.028592375	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214222628	7	117172385	G	T	CFTR	CCDS5773.1	r.?	-	-	intronic	34	0	0	55	11	20	0	0	NA	0	0	NA	4.77E-15	3	2	1	1	NA	NA	NA	unphased	1.109090909	1.109090909	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214222702	7	118467412	A	T	-	-	-	-	-	-	41	0	0	71	26	36.61971831	0	0	NA	0	0	NA	2.11E-41	3	2	1	1	NA	NA	NA	unphased	2.030729834	1.015364917	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214222925	7	122221202	A	T	CADPS2	CCDS47691.1	r.?	-	-	intronic	27	0	0	74	26	35.13513514	0	0	NA	0	0	NA	7.81E-41	3	2	1	1	NA	NA	NA	unphased	1.948402948	0.974201474	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214223033	7	124281382	G	T	-	-	-	-	-	-	39	0	0	71	35	49.29577465	0	0	NA	0	0	NA	5.40E-61	3	2	1	1	NA	NA	NA	unphased	2.733674776	1.366837388	2	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214223064	7	124769891	C	T	-	-	-	-	-	-	38	0	0	67	25	37.31343284	0	0	NA	0	0	NA	4.07E-40	3	2	1	1	NA	NA	NA	unphased	2.069199457	1.034599729	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214223140	7	126011179	C	T	-	-	-	-	-	-	26	0	0	60	11	18.33333333	0	0	NA	0	0	NA	1.34E-14	3	2	1	1	NA	NA	NA	unphased	1.016666667	1.016666667	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214223183	7	126914898	C	T	-	-	-	-	-	-	44	0	0	59	11	18.6440678	0	0	NA	0	0	NA	1.10E-14	3	2	1	1	NA	NA	NA	unphased	1.033898305	1.033898305	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214223377	7	129557879	C	T	UBE2H	CCDS5814.1	r.?	-	-	intronic	29	0	0	57	18	31.57894737	0	0	NA	0	0	NA	9.84E-28	3	2	1	1	NA	NA	NA	unphased	1.751196172	0.875598086	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214223626	7	133067652	G	T	EXOC4	CCDS5829.1	r.?	-	-	intronic	27	0	0	62	17	27.41935484	0	0	NA	0	0	NA	4.56E-25	3	2	1	1	NA	NA	NA	unphased	1.520527859	0.76026393	2	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214223649	7	133347767	G	T	EXOC4	CCDS5829.1	r.?	-	-	intronic	27	0	0	50	12	24	0	0	NA	0	0	NA	2.49E-17	3	2	1	1	NA	NA	NA	unphased	1.330909091	1.330909091	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214223704	7	134222293	C	T	AKR1B10	CCDS5832.1	r.?	-	-	intronic	23	0	0	54	22	40.74074074	0	0	NA	0	0	NA	1.60E-36	3	2	1	1	NA	NA	NA	unphased	2.259259259	1.12962963	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214223825	7	136236479	C	T	-	-	-	-	-	-	30	0	0	66	20	30.3030303	0	0	NA	0	0	NA	3.11E-30	3	2	1	1	NA	NA	NA	unphased	1.680440771	0.840220386	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214224585	7	144937153	C	T	-	-	-	-	-	-	43	0	0	71	11	15.49295775	0	0	NA	0	0	NA	9.49E-14	3	2	1	1	NA	NA	NA	unphased	0.85915493	0.85915493	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214224613	7	145358603	A	T	-	-	-	-	-	-	37	0	0	61	6	9.836065574	0	0	NA	0	0	NA	6.85E-07	3	2	1	1	NA	NA	NA	unphased	0.545454545	0.545454545	1	0.0275	0.9725	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214224664	7	146286805	G	T	CNTNAP2	CCDS5889.1	r.?	-	-	intronic	29	0	0	59	8	13.55932203	0	0	NA	0	0	NA	6.90E-10	3	2	1	1	NA	NA	NA	unphased	0.75192604	0.75192604	1	0.00375	0.99625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214224734	7	147259219	G	T	CNTNAP2	CCDS5889.1	r.?	-	-	intronic	37	0	0	59	14	23.72881356	205	0	0	155	30	19.35483871	6.58E-20	3	2	1	1	NA	NA	NA	unphased	1.31587057	1.31587057	1	0	1	0	2	1	4.87E-38	1	YES	1_1	somatic	custom.pulldown.HiSeq
1352322	PD9768b	1214224750	7	147559985	C	T	CNTNAP2	CCDS5889.1	r.?	-	-	intronic	33	0	0	67	25	37.31343284	0	0	NA	0	0	NA	4.07E-40	3	2	1	1	NA	NA	NA	unphased	2.069199457	1.034599729	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214225053	7	151623982	C	T	-	-	-	-	-	-	24	0	0	63	26	41.26984127	0	0	NA	0	0	NA	4.45E-43	3	2	1	1	NA	NA	NA	unphased	2.288600289	1.144300144	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214225448	7	153431999	C	T	-	-	-	-	-	-	36	0	0	73	12	16.43835616	0	0	NA	0	0	NA	3.39E-15	3	2	1	1	NA	NA	NA	unphased	0.911581569	0.911581569	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214225475	7	153727770	C	T	DPP6	ENST00000404039	r.?	-	-	intronic	23	0	0	65	15	23.07692308	0	0	NA	0	0	NA	5.00E-21	3	2	1	1	NA	NA	NA	unphased	1.27972028	1.27972028	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214225509	7	154152411	C	T	DPP6	ENST00000404039	r.?	-	-	intronic	23	0	0	54	11	20.37037037	0	0	NA	0	0	NA	3.84E-15	3	2	1	1	NA	NA	NA	unphased	1.12962963	1.12962963	1	0.00125	0.9975	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214225736	7	156828599	G	T	-	-	-	-	-	-	21	0	0	51	11	21.56862745	0	0	NA	0	0	NA	1.94E-15	3	2	1	1	NA	NA	NA	unphased	1.196078431	1.196078431	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214226188	8	1918816	G	T	KBTBD11	CCDS34795.1	r.?	-	-	upstream	32	0	0	47	25	53.19148936	0	0	NA	0	0	NA	3.98E-45	2.174127563	2	0	0.825872437	2	1	0.174127563	unphased	2.510416015	1.255208008	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214226363	8	4084861	G	T	-	-	-	-	-	-	30	0	0	36	13	36.11111111	266	1	0.37593985	101	14	13.86138614	2.53E-21	0.746526821	0	0	0.253473179	1	0	0.746526821	unphased	1.188771049	1.188771049	1	0	1	0	2	1	2.08E-16	0.736403598	YES	1_1	somatic	custom.pulldown.HiSeq
1352322	PD9768b	1214226418	8	4957747	A	T	-	-	-	-	-	-	28	0	0	55	23	41.81818182	0	0	NA	0	0	NA	1.91E-38	1.721104505	1	0	0.278895495	2	0	0.721104505	unphased	1.784197421	1.036658388	1.721104505	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214226484	8	5816338	A	T	-	-	-	-	-	-	34	0	0	56	25	44.64285714	0	0	NA	0	0	NA	1.43E-42	1.721104505	1	0	0.278895495	2	0	0.721104505	unphased	1.904713862	1.10668112	1.721104505	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214226532	8	6596088	G	T	AGPAT5	CCDS34796.1	r.?	-	-	intronic	27	0	0	51	7	13.7254902	0	0	NA	0	0	NA	7.46E-09	1.721104505	1	0	0.278895495	2	0	0.721104505	unphased	0.585606144	0.812096083	0.721104505	0.00625	0.99375	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214228083	8	32489835	C	T	NRG1	CCDS6086.1	r.?	-	-	intronic	14	0	0	50	21	42	2	0	0	0	0	NA	2.79E-35	1.721104505	1	0	0.278895495	2	0	0.721104505	unphased	1.791954801	1.041165598	1.721104505	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214228089	8	32611125	C	T	NRG1	CCDS6086.1	r.?	-	-	intronic	28	0	0	59	22	37.28813559	141	0	0	114	33	28.94736842	1.79E-35	1.721104505	1	0	0.278895495	2	0	0.721104505	unphased	1.590920324	0.924360095	1.721104505	0	1	0	2	1	3.97E-48	1	YES	1_1	somatic	custom.pulldown.HiSeq
1352322	PD9768b	1214228261	8	36468280	C	T	-	-	-	-	-	-	41	0	0	47	19	40.42553191	0	0	NA	0	0	NA	1.16E-31	1.721104505	1	0	0.278895495	2	0	0.721104505	unphased	1.724779191	1.002135074	1.721104505	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214228276	8	36828687	G	T	-	-	-	-	-	-	32	0	0	85	34	40	0	0	NA	0	0	NA	2.79E-55	5.281616629	3	2	0.718383371	4	2	0.281616629	unphased	3.13082847	1.04360949	3	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214228830	8	41696048	C	T	ANK1	CCDS47849.1	r.?	-	-	intronic	7	0	0	68	17	25	0	0	NA	0	0	NA	2.69E-24	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	1.78169691	0.890848455	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214228836	8	41767483	C	T	-	-	-	-	-	-	16	0	0	79	10	12.65822785	0	0	NA	0	0	NA	1.03E-11	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	0.902125018	0.902125018	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214228873	8	42235888	C	T	DKK4	CCDS6130.1	r.?	-	-	upstream	30	0	0	70	10	14.28571429	0	0	NA	0	0	NA	2.95E-12	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	1.01811252	1.01811252	1	0.0025	0.99625	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214228874	8	42253987	C	T	VDAC3	CCDS47850.1	r.?	-	-	intronic	31	0	0	63	11	17.46031746	0	0	NA	0	0	NA	2.37E-14	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	1.244359747	1.244359747	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214228910	8	42594241	G	T	CHRNB3	CCDS6134.1	r.?	-	-	downstream	28	0	0	83	22	26.5060241	0	0	NA	0	0	NA	1.23E-31	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	1.889028049	0.944514024	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214228979	8	43182803	C	T	POTEA	CCDS43735.1	r.?	-	-	intronic	24	0	0	80	9	11.25	0	0	NA	2	0	0	3.29E-10	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	0.801763609	0.801763609	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214229669	8	47652602	G	T	-	-	-	-	-	-	42	0	0	85	24	28.23529412	0	0	NA	0	0	NA	3.98E-35	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	2.012269451	1.006134726	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214229939	8	50807312	A	T	-	-	-	-	-	-	32	0	0	88	18	20.45454545	0	0	NA	0	0	NA	6.62E-24	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	1.457752017	1.457752017	1	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214230025	8	51673918	G	T	SNTG1	CCDS6147.1	r.?	-	-	intronic	36	0	0	75	7	9.333333333	0	0	NA	0	0	NA	1.15E-07	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	0.665166846	1.144209496	0.581333094	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214230029	8	51886900	C	T	-	-	-	-	-	-	33	0	0	87	22	25.28735632	0	0	NA	0	0	NA	3.97E-31	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	1.802176185	0.901088092	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214230540	8	57652498	C	T	-	-	-	-	-	-	13	0	0	72	14	19.44444444	0	0	NA	0	0	NA	1.39E-18	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	1.385764263	1.385764263	1	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214230767	8	60464552	G	T	-	-	-	-	-	-	30	0	0	67	14	20.89552239	0	0	NA	0	0	NA	4.66E-19	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	1.489179507	1.489179507	1	0	0.9925	0.0075	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214230898	8	62055860	C	T	-	-	-	-	-	-	30	0	0	80	19	23.75	0	0	NA	0	0	NA	1.65E-26	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	1.692612064	1.070370355	1.581333094	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214231083	8	64359760	C	T	-	-	-	-	-	-	38	0	0	82	12	14.63414634	0	0	NA	0	0	NA	1.46E-14	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	1.042944533	1.042944533	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214231458	8	68698158	G	T	-	-	-	-	-	-	31	0	0	72	13	18.05555556	0	0	NA	0	0	NA	6.58E-17	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	1.286781102	1.286781102	1	0.00125	0.99625	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214231555	8	70051370	C	T	-	-	-	-	-	-	35	0	0	80	12	15	0	0	NA	0	0	NA	1.07E-14	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	1.069018146	1.069018146	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214232039	8	74694417	C	T	-	-	-	-	-	-	17	0	0	69	7	10.14492754	0	0	NA	0	0	NA	6.43E-08	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	0.723007442	1.243705974	0.581333094	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214232239	8	76932261	C	T	-	-	-	-	-	-	36	0	0	70	10	14.28571429	0	0	NA	0	0	NA	2.95E-12	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	1.01811252	1.01811252	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214232286	8	77659195	C	T	ZFHX4	CCDS47878.1	r.?	-	-	intronic	34	0	0	92	12	13.04347826	0	0	NA	0	0	NA	6.12E-14	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	0.929580996	0.929580996	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214232430	8	79118444	C	T	-	-	-	-	-	-	48	0	0	75	16	21.33333333	0	0	NA	0	0	NA	9.88E-22	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	1.520381363	0.961455476	1.581333094	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214232616	8	81362442	C	T	-	-	-	-	-	-	27	0	0	80	34	42.5	0	0	NA	0	0	NA	2.05E-56	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	3.028884747	1.173380047	2.581333094	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214232638	8	81767347	C	T	ZNF704	CCDS34913.1	r.?	-	-	intronic	38	0	0	81	30	37.03703704	0	0	NA	0	0	NA	1.02E-47	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	2.639550978	1.022553418	2.581333094	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214232832	8	84211718	A	T	-	-	-	-	-	-	45	0	0	84	7	8.333333333	0	0	NA	0	0	NA	2.53E-07	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	0.59389897	1.021615621	0.581333094	0.00125	0.9975	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214232880	8	84614106	C	T	-	-	-	-	-	-	48	0	0	77	20	25.97402597	0	0	NA	0	0	NA	1.07E-28	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	1.851113673	0.925556836	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214232928	8	85329022	G	T	-	-	-	-	-	-	41	0	0	98	22	22.44897959	0	0	NA	0	0	NA	7.37E-30	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	1.599891103	1.011735673	1.581333094	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214232960	8	85825821	G	T	RALYL	ENST00000399361	r.?	-	-	intronic	28	0	0	99	11	11.11111111	0	0	NA	0	0	NA	4.11E-12	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	0.791865293	0.791865293	1	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214233427	8	89960612	A	T	-	-	-	-	-	-	34	0	0	66	21	31.81818182	0	0	NA	0	0	NA	3.42E-32	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	2.267614249	0.878466345	2.581333094	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214233580	8	91832242	C	T	NECAB1	CCDS47889.1	r.?	-	-	intronic	37	0	0	86	34	39.53488372	0	0	NA	0	0	NA	4.60E-55	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	2.817567206	1.091516323	2.581333094	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214233612	8	92215695	A	T	LRRC69	CCDS47890.1	r.?	-	-	intronic	25	0	0	67	14	20.89552239	0	0	NA	0	0	NA	4.66E-19	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	1.489179507	1.489179507	1	0	0.99625	0.00375	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214233656	8	92905621	C	T	-	-	-	-	-	-	30	0	0	65	13	20	0	0	NA	0	0	NA	1.57E-17	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	1.425357528	1.425357528	1	0	0.99375	0.00625	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214234148	8	98039138	A	T	ENSG00000104324	CCDS6273.1	r.?	-	-	intronic	26	0	0	77	7	9.090909091	0	0	NA	0	0	NA	1.38E-07	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	0.647889785	1.114489769	0.581333094	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214234172	8	98288911	G	T	ENSG00000180543	CCDS34927.1	r.1266c>a	c.1162C>A	p.R388S	missense	35	0	0	68	18	26.47058824	278	0	0	260	55	21.15384615	3.83E-26	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	1.88650261	0.943251305	2	0.00125	0.99875	0	2	1	1.12E-70	1	YES	1_1	somatic	custom.pulldown.HiSeq
1352322	PD9768b	1214234393	8	100617627	G	T	VPS13B	CCDS6280.1	r.?	-	-	intronic	35	0	0	88	20	22.72727273	0	0	NA	0	0	NA	2.12E-27	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	1.619724463	1.024277851	1.581333094	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214234486	8	101614511	C	T	SNX31	CCDS6288.1	r.?	-	-	intronic	32	0	0	87	15	17.24137931	0	0	NA	0	0	NA	5.73E-19	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	1.22875649	1.22875649	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214234925	8	105702331	G	T	-	-	-	-	-	-	34	0	0	70	13	18.57142857	0	0	NA	0	0	NA	4.44E-17	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	1.323546276	1.323546276	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214234933	8	105782048	G	T	-	-	-	-	-	-	20	0	0	75	9	12	0	0	NA	0	0	NA	1.82E-10	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	0.855214517	0.855214517	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214235004	8	106507542	G	T	ZFPM2	CCDS47908.1	r.?	-	-	intronic	37	0	0	96	28	29.16666667	0	0	NA	0	0	NA	3.52E-41	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	2.078646395	1.039323197	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214235180	8	108583148	C	T	-	-	-	-	-	-	39	0	0	90	8	8.888888889	0	0	NA	0	0	NA	2.10E-08	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	0.633492235	1.089723329	0.581333094	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214235436	8	111762991	G	T	-	-	-	-	-	-	35	0	0	58	17	29.31034483	0	0	NA	0	0	NA	1.24E-25	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	2.088886032	1.044443016	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214235545	8	113095977	G	T	-	-	-	-	-	-	27	0	0	78	20	25.64102564	0	0	NA	0	0	NA	1.43E-28	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	1.827381446	0.913690723	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214235553	8	113230502	C	T	CSMD3	CCDS6315.1	r.?	-	-	downstream	15	0	0	65	19	29.23076923	0	0	NA	0	0	NA	1.89E-28	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	2.083214848	1.041607424	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214235643	8	114284400	G	T	CSMD3	CCDS6315.1	r.?	-	-	intronic	35	0	0	75	15	20	0	0	NA	0	0	NA	5.25E-20	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	1.425357528	1.425357528	1	0	0.99625	0.00375	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214235694	8	114901135	G	T	-	-	-	-	-	-	34	0	0	70	6	8.571428571	69	0	0	96	9	9.375	1.56E-06	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	0.610867512	1.050804639	0.581333094	0	1	0	2	1	1.71E-09	1	YES	1_1	somatic	custom.pulldown.HiSeq
1352322	PD9768b	1214236289	8	121595379	C	T	SNTB1	CCDS6334.1	r.?	-	-	intronic	46	0	0	84	14	16.66666667	0	0	NA	0	0	NA	1.40E-17	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	1.18779794	1.18779794	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214236628	8	125232296	G	T	ENSG00000214803	ENST00000399016	r.?	-	-	intronic	21	0	0	72	5	6.944444444	0	0	NA	0	0	NA	3.31E-05	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	0.494915808	0.851346351	0.581333094	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214236942	8	128482579	C	T	AC018714.1	ENST00000502082	r.?	-	-	intronic	33	0	0	92	10	10.86956522	0	0	NA	0	0	NA	4.85E-11	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	0.77465083	0.77465083	1	0.00375	0.99625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214237130	8	130516778	A	T	AC013300.1	ENST00000446592	r.?	-	-	intronic	40	0	0	68	9	13.23529412	0	0	NA	0	0	NA	7.38E-11	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	0.943251305	0.943251305	1	0.00125	0.9975	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214237272	8	131993562	G	T	ADCY8	CCDS6363.1	r.?	-	-	intronic	45	0	0	87	11	12.64367816	0	0	NA	0	0	NA	9.65E-13	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	0.901088092	0.901088092	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214237606	8	136204258	C	T	-	-	-	-	-	-	38	0	0	99	6	6.060606061	0	0	NA	0	0	NA	1.18E-05	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	0.431926524	0.742993179	0.581333094	0.005	0.995	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214237691	8	137122096	C	T	-	-	-	-	-	-	26	0	0	90	19	21.11111111	0	0	NA	0	0	NA	1.95E-25	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	1.504544057	0.951440315	1.581333094	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214237765	8	138092000	C	T	-	-	-	-	-	-	33	0	0	75	13	17.33333333	0	0	NA	0	0	NA	1.16E-16	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	1.235309857	1.235309857	1	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214237790	8	138422724	G	T	-	-	-	-	-	-	28	0	0	64	12	18.75	0	0	NA	0	0	NA	6.30E-16	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	1.336272682	1.336272682	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214237845	8	138864519	A	T	-	-	-	-	-	-	28	0	0	47	17	36.17021277	0	0	NA	0	0	NA	1.81E-27	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	2.577774253	0.998621316	2.581333094	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214237988	8	140154980	C	T	-	-	-	-	-	-	34	0	0	81	28	34.56790123	0	0	NA	0	0	NA	1.28E-43	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	2.463580912	0.95438319	2.581333094	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214238066	8	141072121	C	T	TRAPPC9	CCDS34946.1	r.?	-	-	intronic	9	0	0	81	33	40.74074074	0	0	NA	0	0	NA	4.96E-54	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	2.903506075	1.12480876	2.581333094	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214238272	8	143134910	A	T	-	-	-	-	-	-	36	0	0	79	4	5.063291139	0	0	NA	0	0	NA	0.000696582	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	0.360850007	0.620728479	0.581333094	0.01375	0.98625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214238285	8	143222957	C	T	-	-	-	-	-	-	12	0	0	73	12	16.43835616	0	0	NA	0	0	NA	3.39E-15	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	1.171526735	1.171526735	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214238541	8	145802990	C	T	ENSG00000147799	CCDS34971.1	r.?	-	-	intronic	29	0	0	81	18	22.22222222	0	0	NA	0	0	NA	1.29E-24	4.581333094	2	2	0.418666906	3	2	0.581333094	unphased	1.583730587	1.001516121	1.581333094	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214239065	9	6138633	C	T	-	-	-	-	-	-	27	0	0	59	12	20.33898305	0	0	NA	0	0	NA	2.20E-16	3	2	1	1	NA	NA	NA	unphased	1.12788906	1.12788906	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214239093	9	6449987	G	T	UHRF2	CCDS6469.1	r.?	-	-	intronic	32	0	0	68	18	26.47058824	0	0	NA	0	0	NA	3.83E-26	3	2	1	1	NA	NA	NA	unphased	1.467914439	0.733957219	2	0.00375	0.99625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214239286	9	9306907	G	T	PTPRD	CCDS43786.1	r.?	-	-	intronic	35	0	0	48	15	31.25	0	0	NA	0	0	NA	2.86E-23	3	2	1	1	NA	NA	NA	unphased	1.732954545	0.866477273	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214239395	9	11012156	C	T	-	-	-	-	-	-	9	0	0	60	20	33.33333333	0	0	NA	0	0	NA	3.30E-31	3	2	1	1	NA	NA	NA	unphased	1.848484848	0.924242424	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214239426	9	11586395	G	T	-	-	-	-	-	-	26	0	0	69	8	11.5942029	0	0	NA	0	0	NA	2.49E-09	3	2	1	1	NA	NA	NA	unphased	0.642951252	0.642951252	1	0.01375	0.98625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214239839	9	17479256	G	T	CNTLN	CCDS43789.1	r.?	-	-	intronic	40	0	0	60	8	13.33333333	0	0	NA	0	0	NA	7.93E-10	3	2	1	1	NA	NA	NA	unphased	0.739393939	0.739393939	1	0.00125	0.9975	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214239850	9	17687168	G	T	SH3GL2	CCDS6483.1	r.?	-	-	intronic	38	0	0	69	13	18.84057971	0	0	NA	0	0	NA	3.64E-17	3	2	1	1	NA	NA	NA	unphased	1.044795784	1.044795784	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214240016	9	20932566	C	T	KIAA1797	CCDS34993.1	r.?	-	-	intronic	29	0	0	51	8	15.68627451	0	0	NA	0	0	NA	2.05E-10	3	2	1	1	NA	NA	NA	unphased	0.869875223	0.869875223	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214240023	9	21021018	G	T	PTPLAD2	CCDS43791.1	r.?	-	-	intronic	37	0	0	66	9	13.63636364	0	0	NA	0	0	NA	5.59E-11	3	2	1	1	NA	NA	NA	unphased	0.756198347	0.756198347	1	0.00625	0.99375	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214240177	9	23796623	A	T	ELAVL2	CCDS6515.1	r.?	-	-	intronic	36	0	0	71	13	18.30985915	0	0	NA	0	0	NA	5.42E-17	3	2	1	1	NA	NA	NA	unphased	1.015364917	1.015364917	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214240261	9	25787447	C	T	-	-	-	-	-	-	29	0	0	67	18	26.86567164	158	1	0.632911392	183	36	19.67213115	2.83E-26	3	2	1	1	NA	NA	NA	unphased	1.489823609	0.744911805	2	0.005	0.995	0	2	1	1.34E-45	0.547053657	YES	1_1	somatic	custom.pulldown.HiSeq
1352322	PD9768b	1214240346	9	27252234	G	T	-	-	-	-	-	-	8	0	0	56	15	26.78571429	0	0	NA	0	0	NA	4.09E-22	3	2	1	1	NA	NA	NA	unphased	1.48538961	1.48538961	1	0	0.99625	0.00375	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214240449	9	28949203	A	T	-	-	-	-	-	-	23	0	0	69	12	17.39130435	0	0	NA	0	0	NA	1.65E-15	3	2	1	1	NA	NA	NA	unphased	0.964426877	0.964426877	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214240457	9	29229132	G	T	-	-	-	-	-	-	38	0	0	69	33	47.82608696	0	0	NA	0	0	NA	5.18E-57	3	2	1	1	NA	NA	NA	unphased	2.652173913	1.326086957	2	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214240530	9	30229671	A	T	-	-	-	-	-	-	31	0	0	66	17	25.75757576	0	0	NA	0	0	NA	1.52E-24	3	2	1	1	NA	NA	NA	unphased	1.428374656	1.428374656	1	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214240535	9	30309252	G	T	-	-	-	-	-	-	29	0	0	74	11	14.86486486	0	0	NA	0	0	NA	1.53E-13	3	2	1	1	NA	NA	NA	unphased	0.824324324	0.824324324	1	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214240558	9	30659631	A	T	-	-	-	-	-	-	31	0	0	71	22	30.98591549	0	0	NA	0	0	NA	2.34E-33	3	2	1	1	NA	NA	NA	unphased	1.718309859	0.85915493	2	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214241073	9	37079621	A	T	-	-	-	-	-	-	7	0	0	59	15	25.42372881	0	0	NA	0	0	NA	9.90E-22	3	2	1	1	NA	NA	NA	unphased	1.409861325	1.409861325	1	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214247075	9	76781248	A	T	-	-	-	-	-	-	17	0	0	63	10	15.87301587	0	0	NA	0	0	NA	9.81E-13	2.697349171	1	1	0.302650829	2	1	0.697349171	unphased	0.832191066	0.832191066	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214247189	9	78575671	G	T	PCSK5	CCDS6652.1	r.?	-	-	intronic	31	0	0	74	24	32.43243243	0	0	NA	0	0	NA	8.21E-37	2.697349171	1	1	0.302650829	2	1	0.697349171	unphased	1.700368773	1.001779011	1.697349171	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214247235	9	79064032	C	T	GCNT1	CCDS6653.1	r.?	-	-	intronic	18	0	0	58	14	24.13793103	0	0	NA	0	0	NA	5.04E-20	2.697349171	1	1	0.302650829	2	1	0.697349171	unphased	1.265504345	1.265504345	1	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214247514	9	84362417	A	T	-	-	-	-	-	-	14	0	0	51	7	13.7254902	0	0	NA	0	0	NA	7.46E-09	2.697349171	1	1	0.302650829	2	1	0.697349171	unphased	0.71960051	1.031908462	0.697349171	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214247948	9	91212235	C	T	-	-	-	-	-	-	26	0	0	62	5	8.064516129	0	0	NA	0	0	NA	1.60E-05	3.236559885	2	1	0.763440115	3	1	0.236559885	unphased	0.466291486	0.466291486	1	0.06	0.94	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214248084	9	93376791	G	T	DIRAS2	CCDS6687.1	r.?	-	-	intronic	27	0	0	43	11	25.58139535	0	0	NA	0	0	NA	2.42E-16	3.236559885	2	1	0.763440115	3	1	0.236559885	unphased	1.479119971	1.479119971	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214248733	9	103428564	A	T	-	-	-	-	-	-	32	0	0	60	17	28.33333333	0	0	NA	0	0	NA	2.41E-25	2.370148363	1	1	0.629851637	2	1	0.370148363	unphased	1.392754158	1.392754158	1	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214248769	9	104333032	C	T	GRIN3A	CCDS6758.1	r.6373g>a	c.?	p.?	3'UTR variant	39	0	0	55	12	21.81818182	0	0	NA	0	0	NA	8.78E-17	2.370148363	1	1	0.629851637	2	1	0.370148363	unphased	1.07249518	1.07249518	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214248821	9	105543337	A	T	-	-	-	-	-	-	16	0	0	51	10	19.60784314	0	0	NA	0	0	NA	1.04E-13	2.370148363	1	1	0.629851637	2	1	0.370148363	unphased	0.963843708	0.963843708	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214248832	9	105693148	C	T	-	-	-	-	-	-	35	0	0	55	9	16.36363636	0	0	NA	0	0	NA	1.01E-11	2.370148363	1	1	0.629851637	2	1	0.370148363	unphased	0.804371385	0.804371385	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214248860	9	106285699	C	T	-	-	-	-	-	-	42	0	0	53	13	24.52830189	0	0	NA	0	0	NA	8.53E-19	2.370148363	1	1	0.629851637	2	1	0.370148363	unphased	1.205713921	1.205713921	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214248968	9	108557924	G	T	-	-	-	-	-	-	30	0	0	57	15	26.31578947	0	0	NA	0	0	NA	5.53E-22	2.370148363	1	1	0.629851637	2	1	0.370148363	unphased	1.293579713	1.293579713	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214248988	9	108916035	A	T	-	-	-	-	-	-	36	0	0	46	6	13.04347826	0	0	NA	0	0	NA	1.23E-07	2.370148363	1	1	0.629851637	2	1	0.370148363	unphased	0.641165597	0.641165597	1	0.00625	0.99375	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214249059	9	110440361	C	T	-	-	-	-	-	-	24	0	0	36	9	25	0	0	NA	0	0	NA	1.63E-13	2.370148363	1	1	0.629851637	2	1	0.370148363	unphased	1.228900727	1.228900727	1	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214249076	9	110664892	C	T	-	-	-	-	-	-	37	0	0	45	14	31.11111111	0	0	NA	0	0	NA	8.81E-22	2.370148363	1	1	0.629851637	2	1	0.370148363	unphased	1.529298683	1.529298683	1	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214249319	9	115001444	G	T	ROD1	CCDS6784.1	r.?	-	-	intronic	29	0	0	63	14	22.22222222	0	0	NA	0	0	NA	1.81E-19	2.370148363	1	1	0.629851637	2	1	0.370148363	unphased	1.092356202	1.092356202	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214249489	9	117816593	A	T	TNC	CCDS6811.1	r.?	-	-	intronic	43	0	0	86	10	11.62790698	0	0	NA	0	0	NA	2.45E-11	2.370148363	1	1	0.629851637	2	1	0.370148363	unphased	0.571581734	0.571581734	1	0.03375	0.96625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214249562	9	118882804	G	T	-	-	-	-	-	-	17	0	0	81	29	35.80246914	0	0	NA	0	0	NA	1.18E-45	2.370148363	1	1	0.629851637	2	1	0.370148363	unphased	1.759907214	1.284464706	1.370148363	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214249609	9	119677122	G	T	ASTN2	CCDS48009.1	r.?	-	-	intronic	37	0	0	71	15	21.12676056	0	0	NA	0	0	NA	2.15E-20	2.370148363	1	1	0.629851637	2	1	0.370148363	unphased	1.038507657	1.038507657	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214249615	9	119745882	G	T	ASTN2	CCDS48009.1	r.?	-	-	intronic	37	0	0	48	10	20.83333333	0	0	NA	0	0	NA	5.37E-14	2.370148363	1	1	0.629851637	2	1	0.370148363	unphased	1.024083939	1.024083939	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214249625	9	119888798	G	T	ASTN2	CCDS48009.1	r.?	-	-	intronic	50	0	0	75	30	40	0	0	NA	0	0	NA	5.85E-49	2.370148363	1	1	0.629851637	2	1	0.370148363	unphased	1.966241164	1.435057119	1.370148363	0	0.98875	0.01125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214249704	9	121303906	C	T	-	-	-	-	-	-	31	0	0	63	22	34.92063492	0	0	NA	0	0	NA	1.03E-34	2.370148363	1	1	0.629851637	2	1	0.370148363	unphased	1.716559746	1.252827644	1.370148363	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214249741	9	122121138	C	T	DBC1	CCDS6822.1	r.?	-	-	intronic	22	0	0	60	12	20	0	0	NA	0	0	NA	2.74E-16	2.370148363	1	1	0.629851637	2	1	0.370148363	unphased	0.983120582	0.983120582	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214249776	9	122580195	A	T	-	-	-	-	-	-	44	0	0	66	10	15.15151515	0	0	NA	0	0	NA	1.60E-12	2.370148363	1	1	0.629851637	2	1	0.370148363	unphased	0.74478832	0.74478832	1	0.00625	0.99375	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214249892	9	124174410	C	T	-	-	-	-	-	-	19	0	0	60	19	31.66666667	0	0	NA	0	0	NA	3.21E-29	2.370148363	1	1	0.629851637	2	1	0.370148363	unphased	1.556607588	1.136086886	1.370148363	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214250487	9	131360742	G	T	SPTAN1	CCDS48036.1	r.3588g>u	c.3478G>T	p.E1160*	nonsense	34	0	0	73	23	31.50684932	181	0	0	132	38	28.78787879	5.33E-35	2.370148363	1	1	0.629851637	2	1	0.370148363	unphased	1.548751601	1.13035321	1.370148363	0	1	0	2	1	4.52E-55	1	YES	1_1	somatic	custom.pulldown.HiSeq
1352322	PD9768b	1214250738	9	134298959	C	T	BAT2L1	ENST00000405995	r.?	-	-	intronic	8	0	0	67	13	19.40298507	0	0	NA	0	0	NA	2.41E-17	4.864050964	3	1	0.135949036	3	2	0.864050964	unphased	1.437665248	1.437665248	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214250751	9	134438346	C	T	ENSG00000228468	ENST00000438289	r.?	-	-	downstream	29	0	0	57	7	12.28070175	0	0	NA	0	0	NA	1.66E-08	4.864050964	3	1	0.135949036	3	2	0.864050964	unphased	0.909939273	1.053108337	0.864050964	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214251282	X	5557254	C	T	-	-	-	-	-	-	40	0	0	47	10	21.27659574	0	0	NA	0	0	NA	4.27E-14	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	1.025043686	1.025043686	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214251318	X	6115819	A	T	NLGN4X	CCDS14126.1	r.?	-	-	intronic	9	0	0	51	12	23.52941176	0	0	NA	0	0	NA	3.24E-17	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	1.133577723	1.133577723	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214251362	X	7119765	C	T	-	-	-	-	-	-	34	0	0	42	8	19.04761905	0	0	NA	0	0	NA	3.96E-11	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	0.917658157	0.917658157	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214251425	X	8116859	C	T	-	-	-	-	-	-	27	0	0	56	13	23.21428571	0	0	NA	0	0	NA	1.89E-18	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	1.118395879	1.118395879	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214251454	X	8618441	C	T	KAL1	CCDS14130.1	r.?	-	-	intronic	31	0	0	56	15	26.78571429	0	0	NA	0	0	NA	4.09E-22	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	1.290456783	1.290456783	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214251630	X	11346693	C	T	ARHGAP6	CCDS14140.1	r.?	-	-	intronic	34	0	0	50	5	10	0	0	NA	0	0	NA	5.49E-06	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	0.481770532	0.481770532	1	0.05375	0.94625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214251671	X	12320131	A	T	FRMPD4	CCDS35201.1	r.?	-	-	intronic	44	0	0	65	14	21.53846154	0	0	NA	0	0	NA	2.93E-19	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	1.037659608	1.037659608	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214251685	X	12579893	C	T	FRMPD4	CCDS35201.1	r.?	-	-	intronic	30	0	0	67	9	13.43283582	0	0	NA	0	0	NA	6.43E-11	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	0.647154446	0.647154446	1	0.0175	0.9825	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214251857	X	16028918	C	T	-	-	-	-	-	-	37	0	0	61	17	27.86885246	0	0	NA	0	0	NA	3.33E-25	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	1.342639188	1.342639188	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214251863	X	16180260	C	T	-	-	-	-	-	-	14	0	0	58	8	13.79310345	0	0	NA	0	0	NA	5.99E-10	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	0.664511079	0.664511079	1	0.0075	0.9925	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214252017	X	19487615	C	T	MAP3K15	CCDS35212.1	r.?	-	-	intronic	22	0	0	32	10	31.25	0	0	NA	0	0	NA	5.70E-16	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	1.505532913	1.505532913	1	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214252067	X	20405560	A	T	-	-	-	-	-	-	31	0	0	65	9	13.84615385	0	0	NA	0	0	NA	4.85E-11	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	0.667066891	0.667066891	1	0.01	0.99	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214252276	X	26052702	A	T	-	-	-	-	-	-	34	0	0	57	13	22.80701754	0	0	NA	0	0	NA	2.44E-18	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	1.098774898	1.098774898	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214252277	X	26055067	G	T	-	-	-	-	-	-	27	0	0	60	17	28.33333333	0	0	NA	0	0	NA	2.41E-25	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	1.365016508	1.365016508	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214252293	X	26528069	G	T	-	-	-	-	-	-	32	0	0	59	9	15.25423729	0	0	NA	0	0	NA	1.96E-11	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	0.734904202	0.734904202	1	0.00375	0.99625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214252297	X	26697677	G	T	-	-	-	-	-	-	33	0	0	55	12	21.81818182	0	0	NA	0	0	NA	8.78E-17	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	1.051135707	1.051135707	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214252338	X	27980867	G	T	-	-	-	-	-	-	37	0	0	65	10	15.38461538	0	0	NA	0	0	NA	1.36E-12	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	0.741185434	0.741185434	1	0.00375	0.99625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214252353	X	28382800	G	T	-	-	-	-	-	-	22	0	0	40	16	40	0	0	NA	0	0	NA	8.56E-27	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	1.927082129	1.514703047	1.272250778	0	0.995	0.005	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214252360	X	28705908	A	T	IL1RAPL1	CCDS14218.1	r.?	-	-	intronic	8	0	0	40	11	27.5	0	0	NA	0	0	NA	9.88E-17	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	1.324868964	1.324868964	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214252364	X	28784798	C	T	IL1RAPL1	CCDS14218.1	r.?	-	-	intronic	26	0	0	63	7	11.11111111	0	0	NA	0	0	NA	3.38E-08	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	0.535300591	0.535300591	1	0.04	0.96	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214252397	X	29552811	C	T	IL1RAPL1	CCDS14218.1	r.?	-	-	intronic	13	0	0	54	15	27.77777778	0	0	NA	0	0	NA	2.20E-22	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	1.338251479	1.338251479	1	0	0.9925	0.0075	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214252561	X	33173797	C	T	DMD	CCDS14233.1	r.?	-	-	intronic	17	0	0	57	12	21.05263158	0	0	NA	0	0	NA	1.40E-16	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	1.014253752	1.014253752	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214252588	X	34067790	G	T	-	-	-	-	-	-	40	0	0	56	10	17.85714286	0	0	NA	0	0	NA	2.82E-13	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	0.860304522	0.860304522	1	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214252655	X	36284857	G	T	CXorf30	ENST00000378653	r.?	-	-	intronic	10	0	0	61	17	27.86885246	0	0	NA	0	0	NA	3.33E-25	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	1.342639188	1.342639188	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214252678	X	36782459	C	T	-	-	-	-	-	-	36	0	0	45	11	24.44444444	0	0	NA	0	0	NA	4.24E-16	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	1.177661301	1.177661301	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214252734	X	38632044	C	T	-	-	-	-	-	-	33	0	0	62	8	12.90322581	0	0	NA	0	0	NA	1.04E-09	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	0.621639397	0.621639397	1	0.01	0.99	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214252766	X	39708487	C	T	-	-	-	-	-	-	20	0	0	47	11	23.40425532	0	0	NA	0	0	NA	7.21E-16	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	1.127548054	1.127548054	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214252773	X	39794664	C	T	-	-	-	-	-	-	12	0	0	53	11	20.75471698	0	0	NA	0	0	NA	3.07E-15	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	0.999901105	0.999901105	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214252802	X	40303064	C	T	-	-	-	-	-	-	34	0	0	73	15	20.54794521	0	0	NA	0	0	NA	3.38E-20	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	0.98993945	0.98993945	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214252854	X	41255011	G	T	-	-	-	-	-	-	21	0	0	62	20	32.25806452	0	0	NA	0	0	NA	7.19E-31	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	1.554098491	1.221534715	1.272250778	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214252897	X	41926217	G	T	-	-	-	-	-	-	45	0	0	47	11	23.40425532	0	0	NA	0	0	NA	7.21E-16	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	1.127548054	1.127548054	1	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214252966	X	43853136	C	T	-	-	-	-	-	-	25	0	0	55	11	20	0	0	NA	0	0	NA	4.77E-15	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	0.963541065	0.963541065	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214253058	X	45602821	G	T	MIR221	ENST00000385135	r.?	-	-	downstream	25	1	4	56	18	32.14285714	0	0	NA	0	0	NA	6.76E-28	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	1.54854814	1.217172091	1.272250778	0	1	0	2	0.117779757	1	1	NA	NA	NA	NA
1352322	PD9768b	1214253130	X	46854342	C	T	PHF16	CCDS14271.1	r.?	-	-	intronic	26	0	0	77	22	28.57142857	0	0	NA	0	0	NA	1.86E-32	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	1.376487235	1.376487235	1	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214253174	X	47529037	G	T	-	-	-	-	-	-	16	0	0	19	6	31.57894737	0	0	NA	0	0	NA	4.01E-10	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	1.521380628	1.521380628	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214253243	X	48710378	C	T	-	-	-	-	-	-	30	0	0	63	18	28.57142857	0	0	NA	0	0	NA	7.98E-27	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	1.376487235	1.376487235	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214253371	X	51841169	G	T	-	-	-	-	-	-	26	0	0	56	11	19.64285714	0	0	NA	0	0	NA	5.91E-15	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	0.946334974	0.946334974	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214253596	X	56923672	C	T	-	-	-	-	-	-	30	0	0	54	15	27.77777778	0	0	NA	0	0	NA	2.20E-22	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	1.338251479	1.338251479	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214254268	X	62867813	A	T	ARHGEF9	CCDS35315.1	r.?	-	-	intronic	33	0	0	46	4	8.695652174	0	0	NA	0	0	NA	8.62E-05	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	0.418930898	1.538768416	0.272250778	0.00375	0.99375	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214254315	X	64505154	C	T	-	-	-	-	-	-	31	0	0	41	7	17.07317073	0	0	NA	0	0	NA	1.51E-09	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	0.822535055	0.822535055	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214254345	X	65197140	C	T	-	-	-	-	-	-	38	0	0	59	13	22.03389831	0	0	NA	0	0	NA	3.99E-18	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	1.061528292	1.061528292	1	0.00125	0.9975	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214254346	X	65236631	C	T	VSIG4	CCDS14383.1	r.?	-	-	downstream	37	0	0	51	10	19.60784314	0	0	NA	0	0	NA	1.04E-13	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	0.944648103	0.944648103	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214254356	X	65317863	C	T	-	-	-	-	-	-	33	0	0	50	9	18	0	0	NA	0	0	NA	4.07E-12	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	0.867186958	0.867186958	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214254359	X	65458082	G	T	HEPH	CCDS14384.2	r.?	-	-	intronic	40	0	0	46	11	23.91304348	0	0	NA	0	0	NA	5.55E-16	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	1.152059969	1.152059969	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214254370	X	65886139	C	T	-	-	-	-	-	-	31	0	0	48	11	22.91666667	0	0	NA	0	0	NA	9.31E-16	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	1.10405747	1.10405747	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214254393	X	66683950	G	T	-	-	-	-	-	-	32	0	0	43	9	20.93023256	0	0	NA	0	0	NA	9.45E-13	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	1.008356928	1.008356928	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214254402	X	66990265	C	T	-	-	-	-	-	-	27	0	0	41	12	29.26829268	0	0	NA	0	0	NA	1.69E-18	2.272250778	1	1	0.727749222	2	1	0.272250778	unphased	1.410060095	1.410060095	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214254465	X	68751023	C	T	FAM155B	CCDS35317.1	r.2685c>u	c.?	p.?	3'UTR variant	15	0	0	54	11	20.37037037	0	0	NA	0	0	NA	3.84E-15	2	1	1	1	NA	NA	NA	unphased	0.925925926	0.925925926	1	0.0025	0.99625	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214254553	X	70322492	G	T	FOXO4	CCDS43969.1	r.2408g>u	c.?	p.?	3'UTR variant	21	0	0	50	11	22	0	0	NA	0	0	NA	1.52E-15	2	1	1	1	NA	NA	NA	unphased	1	1	1	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214254723	X	74199269	A	T	-	-	-	-	-	-	19	0	0	41	12	29.26829268	0	0	NA	0	0	NA	1.69E-18	2	1	1	1	NA	NA	NA	unphased	1.33037694	1.33037694	1	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214254795	X	76140649	G	T	-	-	-	-	-	-	31	0	0	53	9	16.98113208	0	0	NA	0	0	NA	7.10E-12	2	1	1	1	NA	NA	NA	unphased	0.77186964	0.77186964	1	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214254845	X	76963749	G	T	ATRX	CCDS14434.1	r.?	-	-	intronic	22	0	0	49	12	24.48979592	0	0	NA	0	0	NA	1.90E-17	2	1	1	1	NA	NA	NA	unphased	1.113172542	1.113172542	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214254929	X	79297457	A	T	-	-	-	-	-	-	38	0	0	42	8	19.04761905	0	0	NA	0	0	NA	3.96E-11	2	1	1	1	NA	NA	NA	unphased	0.865800866	0.865800866	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214254979	X	80746770	C	T	-	-	-	-	-	-	27	0	0	51	8	15.68627451	0	0	NA	0	0	NA	2.05E-10	2	1	1	1	NA	NA	NA	unphased	0.713012478	0.713012478	1	0.00125	0.9975	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214255148	X	86016055	A	T	DACH2	CCDS48140.1	r.?	-	-	intronic	32	0	0	52	10	19.23076923	0	0	NA	0	0	NA	1.28E-13	2	1	1	1	NA	NA	NA	unphased	0.874125874	0.874125874	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214255159	X	86259655	C	T	-	-	-	-	-	-	34	0	0	44	13	29.54545455	0	0	NA	0	0	NA	5.49E-20	2	1	1	1	NA	NA	NA	unphased	1.342975207	1.342975207	1	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214255182	X	86713059	C	T	-	-	-	-	-	-	29	0	0	45	8	17.77777778	0	0	NA	0	0	NA	7.14E-11	2	1	1	1	NA	NA	NA	unphased	0.808080808	0.808080808	1	0.00375	0.995	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214255301	X	88758398	C	T	-	-	-	-	-	-	35	0	0	65	17	26.15384615	0	0	NA	0	0	NA	1.14E-24	1.633981384	1	0	0.366018616	1	1	0.633981384	unphased	1.093083243	1.093083243	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214255455	X	92647931	A	T	-	-	-	-	-	-	36	0	0	52	7	13.46153846	0	0	NA	0	0	NA	8.58E-09	2	1	1	1	NA	NA	NA	unphased	0.611888112	0.611888112	1	0.015	0.985	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214255465	X	92929824	G	T	FAM133A	CCDS14466.1	r.?	-	-	intronic	26	0	0	52	9	17.30769231	0	0	NA	0	0	NA	5.92E-12	2	1	1	1	NA	NA	NA	unphased	0.786713287	0.786713287	1	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214255481	X	93242407	G	T	-	-	-	-	-	-	28	0	0	38	9	23.68421053	0	0	NA	0	0	NA	2.79E-13	2	1	1	1	NA	NA	NA	unphased	1.076555024	1.076555024	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214255485	X	93364606	C	T	-	-	-	-	-	-	27	0	0	73	13	17.80821918	0	0	NA	0	0	NA	7.97E-17	2	1	1	1	NA	NA	NA	unphased	0.809464508	0.809464508	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214255514	X	94283471	A	T	-	-	-	-	-	-	40	0	0	48	15	31.25	0	0	NA	0	0	NA	2.86E-23	2	1	1	1	NA	NA	NA	unphased	1.420454545	1.420454545	1	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214255544	X	95053281	C	T	-	-	-	-	-	-	24	0	0	52	13	25	0	0	NA	0	0	NA	6.47E-19	2	1	1	1	NA	NA	NA	unphased	1.136363636	1.136363636	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214255689	X	98626294	C	T	-	-	-	-	-	-	21	0	0	37	6	16.21621622	0	0	NA	0	0	NA	3.18E-08	2	1	1	1	NA	NA	NA	unphased	0.737100737	0.737100737	1	0.005	0.995	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214255779	X	100695490	A	T	-	-	-	-	-	-	7	0	0	45	9	20	0	0	NA	0	0	NA	1.47E-12	2	1	1	1	NA	NA	NA	unphased	0.909090909	0.909090909	1	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214255823	X	101945704	A	T	-	-	-	-	-	-	39	0	0	45	5	11.11111111	0	0	NA	0	0	NA	3.23E-06	2	1	1	1	NA	NA	NA	unphased	0.505050505	0.505050505	1	0.03875	0.96125	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214255854	X	102861154	G	T	TCEAL3	CCDS14511.1	r.?	-	-	upstream	27	0	0	50	5	10	0	0	NA	0	0	NA	5.49E-06	2	1	1	1	NA	NA	NA	unphased	0.454545455	0.454545455	1	0.08625	0.91375	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214255909	X	104186875	G	T	IL1RAPL2	CCDS14517.1	r.?	-	-	intronic	30	0	0	47	7	14.89361702	0	0	NA	0	0	NA	4.12E-09	2	1	1	1	NA	NA	NA	unphased	0.676982592	0.676982592	1	0.00625	0.99375	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214256022	X	108168780	G	T	-	-	-	-	-	-	35	0	0	61	10	16.39344262	0	0	NA	0	0	NA	6.98E-13	2	1	1	1	NA	NA	NA	unphased	0.745156483	0.745156483	1	0.005	0.995	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214256196	X	112579840	G	T	-	-	-	-	-	-	32	0	0	52	9	17.30769231	0	0	NA	0	0	NA	5.92E-12	2	1	1	1	NA	NA	NA	unphased	0.786713287	0.786713287	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214256205	X	112714736	C	T	-	-	-	-	-	-	30	0	0	53	10	18.86792453	0	0	NA	0	0	NA	1.57E-13	2	1	1	1	NA	NA	NA	unphased	0.857632933	0.857632933	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214256213	X	112970040	C	T	-	-	-	-	-	-	46	0	0	50	12	24	0	0	NA	0	0	NA	2.49E-17	2	1	1	1	NA	NA	NA	unphased	1.090909091	1.090909091	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214256270	X	114801245	C	T	PLS3	CCDS14568.1	r.?	-	-	intronic	16	0	0	54	13	24.07407407	0	0	NA	0	0	NA	1.12E-18	2	1	1	1	NA	NA	NA	unphased	1.094276094	1.094276094	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214256368	X	117131273	A	T	KLHL13	ENST00000371882	r.?	-	-	intronic	34	0	0	55	8	14.54545455	0	0	NA	0	0	NA	3.86E-10	2	1	1	1	NA	NA	NA	unphased	0.661157025	0.661157025	1	0.00875	0.99125	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214256449	X	118675539	G	T	CXorf56	CCDS14579.1	r.?	-	-	intronic	33	0	0	56	14	25	0	0	NA	0	0	NA	2.91E-20	2	1	1	1	NA	NA	NA	unphased	1.136363636	1.136363636	1	0	0.99875	0.00125	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214256454	X	118768100	C	T	Sep-06	CCDS14585.1	r.?	-	-	intronic	18	0	0	51	8	15.68627451	0	0	NA	0	0	NA	2.05E-10	2	1	1	1	NA	NA	NA	unphased	0.713012478	0.713012478	1	0.00375	0.99625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214256558	X	121036453	C	T	-	-	-	-	-	-	30	0	0	56	9	16.07142857	0	0	NA	0	0	NA	1.20E-11	2	1	1	1	NA	NA	NA	unphased	0.730519481	0.730519481	1	0.00375	0.99625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214256595	X	121912402	A	T	-	-	-	-	-	-	31	0	0	58	10	17.24137931	0	0	NA	0	0	NA	4.10E-13	2	1	1	1	NA	NA	NA	unphased	0.78369906	0.78369906	1	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214256709	X	124923393	C	T	-	-	-	-	-	-	35	0	0	54	11	20.37037037	0	0	NA	0	0	NA	3.84E-15	2	1	1	1	NA	NA	NA	unphased	0.925925926	0.925925926	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214256838	X	128008984	G	T	-	-	-	-	-	-	30	0	0	64	12	18.75	0	0	NA	0	0	NA	6.30E-16	2	1	1	1	NA	NA	NA	unphased	0.852272727	0.852272727	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214256891	X	128970470	C	T	ZDHHC9	CCDS35395.1	r.?	-	-	intronic	25	0	0	52	13	25	0	0	NA	0	0	NA	6.47E-19	2	1	1	1	NA	NA	NA	unphased	1.136363636	1.136363636	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214256892	X	128993564	G	T	-	-	-	-	-	-	30	0	0	48	11	22.91666667	0	0	NA	0	0	NA	9.31E-16	2	1	1	1	NA	NA	NA	unphased	1.041666667	1.041666667	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214256927	X	129753464	C	T	ENOX2	CCDS14626.1	r.?	-	-	downstream	45	0	0	61	11	18.03278689	0	0	NA	0	0	NA	1.62E-14	2	1	1	1	NA	NA	NA	unphased	0.819672131	0.819672131	1	0.005	0.995	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214257013	X	132251398	A	T	-	-	-	-	-	-	22	0	0	57	11	19.29824561	0	0	NA	0	0	NA	7.29E-15	2	1	1	1	NA	NA	NA	unphased	0.877192982	0.877192982	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214257216	X	137504851	C	T	-	-	-	-	-	-	33	0	0	53	10	18.86792453	0	0	NA	0	0	NA	1.57E-13	2	1	1	1	NA	NA	NA	unphased	0.857632933	0.857632933	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214257337	X	140707439	G	T	-	-	-	-	-	-	28	12	42.85714286	47	21	44.68085106	0	0	NA	0	0	NA	5.29E-36	2	1	1	1	NA	NA	NA	unphased	2.030947776	2.030947776	1	0	0.9275	0.0725	2	6.90E-21	1	1	NA	NA	NA	NA
1352322	PD9768b	1214257379	X	141513842	A	T	-	-	-	-	-	-	29	0	0	54	6	11.11111111	0	0	NA	0	0	NA	3.29E-07	2	1	1	1	NA	NA	NA	unphased	0.505050505	0.505050505	1	0.0375	0.9625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214257399	X	142057723	C	T	-	-	-	-	-	-	29	0	0	49	11	22.44897959	0	0	NA	0	0	NA	1.19E-15	2	1	1	1	NA	NA	NA	unphased	1.020408163	1.020408163	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214257418	X	142575075	C	T	-	-	-	-	-	-	37	0	0	50	10	20	0	0	NA	0	0	NA	8.36E-14	2	1	1	1	NA	NA	NA	unphased	0.909090909	0.909090909	1	0.0025	0.9975	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214257435	X	143155378	A	T	-	-	-	-	-	-	31	0	0	55	16	29.09090909	0	0	NA	0	0	NA	3.78E-24	2	1	1	1	NA	NA	NA	unphased	1.32231405	1.32231405	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214257471	X	144107927	A	T	-	-	-	-	-	-	32	0	0	58	9	15.51724138	0	0	NA	0	0	NA	1.67E-11	2	1	1	1	NA	NA	NA	unphased	0.705329154	0.705329154	1	0.00625	0.99375	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214257476	X	144185257	C	T	-	-	-	-	-	-	36	0	0	34	5	14.70588235	0	0	NA	0	0	NA	7.71E-07	2	1	1	1	NA	NA	NA	unphased	0.668449198	0.668449198	1	0.0075	0.9925	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214257530	X	145263454	G	T	-	-	-	-	-	-	30	0	0	37	8	21.62162162	0	0	NA	0	0	NA	1.33E-11	2	1	1	1	NA	NA	NA	unphased	0.982800983	0.982800983	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214257548	X	145727885	G	T	-	-	-	-	-	-	33	0	0	62	12	19.35483871	0	0	NA	0	0	NA	4.19E-16	2	1	1	1	NA	NA	NA	unphased	0.879765396	0.879765396	1	0	1	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214257564	X	146006225	A	T	-	-	-	-	-	-	19	0	0	42	6	14.28571429	0	0	NA	0	0	NA	7.02E-08	2	1	1	1	NA	NA	NA	unphased	0.649350649	0.649350649	1	0.00875	0.99125	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214257569	X	146100907	C	T	-	-	-	-	-	-	33	0	0	58	8	13.79310345	0	0	NA	0	0	NA	5.99E-10	2	1	1	1	NA	NA	NA	unphased	0.626959248	0.626959248	1	0.01375	0.98625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214257577	X	146174244	A	T	-	-	-	-	-	-	33	0	0	51	8	15.68627451	0	0	NA	0	0	NA	2.05E-10	2	1	1	1	NA	NA	NA	unphased	0.713012478	0.713012478	1	0.00375	0.99625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214257793	X	152502765	A	T	-	-	-	-	-	-	30	0	0	38	8	21.05263158	0	0	NA	0	0	NA	1.67E-11	2	1	1	1	NA	NA	NA	unphased	0.956937799	0.956937799	1	0.00125	0.99875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214257802	X	152841491	C	T	ATP2B3	CCDS35440.1	r.?	-	-	intronic	11	0	0	55	9	16.36363636	0	0	NA	0	0	NA	1.01E-11	2	1	1	1	NA	NA	NA	unphased	0.743801653	0.743801653	1	0.00375	0.99625	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214257819	X	153233058	C	T	HCFC1	CCDS44020.1	r.?	-	-	intronic	13	0	0	44	6	13.63636364	0	0	NA	0	0	NA	9.37E-08	2	1	1	1	NA	NA	NA	unphased	0.619834711	0.619834711	1	0.0125	0.9875	0	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214257849	X	153983117	C	T	GAB3	CCDS48198.1	r.?	-	-	upstream	46	0	0	75	21	28	0	0	NA	0	0	NA	7.75E-31	2	1	1	1	NA	NA	NA	unphased	1.272727273	1.272727273	1	0	0.9975	0.0025	2	1	1	1	NA	NA	NA	NA
1352322	PD9768b	1214257860	X	154363586	A	T	MTCP1	CCDS44027.1	r.?	-	-	intronic	19	0	0	60	15	25	0	0	NA	0	0	NA	1.31E-21	2	1	1	1	NA	NA	NA	unphased	1.136363636	1.136363636	1	0	1	0	2	1	1	1	NA	NA	NA	NA