id	chrl	l5	l3	chrh	h5	h3	stl	sth	paired.Flag	PD9694a	PD9694c	PD9694d	brass1.presence.summary	brass2_chr_from	brass2_strand_from	brass2_loc_from_min	brass2_loc_from_max	brass2_microhomology	brass2_nontemplated_insertion	brass2_chr_to	brass2_strand_to	brass2_loc_to_min	brass2_loc_to_max	brass2_score	CN_A	CN_C	CN_D	CN.presence.regions	notes	PCR_GEL_RESULT	REGIONS_GEL_BAND	STS_NAME1	current.conf.status	val.approach	distance.between.breakpoints	concensus.regions	CONFIDENCE	color	TIMING
8	1	155015485	155015831	1	155083032	155083399	-	+	4	24	0	0	(a--)	1	-	155015721	0	null	T	1	-	155083176	0	98	1	0	0	a	NA	FAILED_VAL	NA	stCENANA-858998	somatic	assoc.copy.num.change	67455	a	HIGH	red	LATE
11	1	219384742	219385129	1	219691847	219692131	+	-	2	0	16	0	(-c-)	1	+	219384839	219384842	CAG	null	1	+	219692028	219692031	99	0	1	0	c	NA	VAL_SOMATIC	C	stCENANA-859NA47	somatic	PCR_gel_electro.	307189	c	HIGH	purple	LATE
12	1	219713761	219714013	1	219715213	219715600	+	+	1	0	14	0	(-c-)	1	+	219713854	0	null	null	1	-	219715308	0	74	0	1	0	c	NA	VAL_SOMATIC	C	stCENANA-859NA46	somatic	PCR_gel_electro.	1454	c	HIGH	purple	LATE
13	1	225656612	225656945	16	24916258	24916758	+	+	32	0	3	4	(-cd)	1	+	225656746	225656748	CA	null	16	-	24916372	24916370	93	0	0	1	d	NA	NOT_SELECTED_FOR_VAL	NA	NA	somatic	assoc.copy.num.change	NA	d	HIGH	green	LATE
14	1	232995313	232995689	8	31438628	31438975	-	-	32	10	4	10	(acd)	1	-	232995594	0	null	null	8	+	31438874	0	88	1	0	1(subclonal(~50%))	ad	NA	VAL_SOMATIC	AD	stCENANA-859NA45	somatic	PCR_gel_electro.	NA	ad	HIGH	yellow	LATE
17	2	141759204	141759644	2	142812496	142812968	-	+	4	0	8	0	(-c-)	2	-	141759527	141759524	GGA	null	2	-	142812599	142812596	98	0	1	0	c	NA	FAILED_VAL	NA	stCENANA-859NA44	somatic	assoc.copy.num.change	1053072	c	HIGH	purple	LATE
18	2	152686058	152686510	2	152771592	152772073	+	-	2	0	6	0	(-c-)	2	+	152686204	152686206	AC	null	2	+	152771968	152771970	99	0	1	0	c	NA	NOT_SELECTED_FOR_VAL	NA	NA	somatic	assoc.copy.num.change	85764	c	HIGH	purple	LATE
21	2	197441908	197442439	11	23949062	23949503	-	+	32	0	12	0	(-c-)	2	-	197442340	197442336	AGAG	null	11	-	23949176	23949172	95	0	1	0	c	NA	VAL_SOMATIC	C	stCENANA-859NA42	somatic	PCR_gel_electro.	NA	c	HIGH	purple	LATE
20	2	197442453	197442984	11	23950076	23950649	+	+	32	0	9	0	(-c-)	2	+	197442544	0	null	TT	11	-	23950224	0	100	0	1	0	c	NA	FAILED_VAL	NA	stCENANA-859NA43	somatic	assoc.copy.num.change	NA	c	HIGH	purple	LATE
23	3	18009565	18009965	10	135071030	135071365	+	+	32	16	1	1	(acd)	3	+	18009649	18009655	AGGAAG	null	10	-	135071128	135071122	99	1	0	0	a	NA	FAILED_VAL	NA	stCENANA-858997	somatic	assoc.copy.num.change	117061479	a	HIGH	red	LATE
25	3	80692759	80693036	16	34289668	34290028	+	+	32	0	21	4	(-cd)	3	+	80692868	0	null	T	16	-	34289761	0	89	0	1	1(subclonal)	cd	may have been lost in 'a' 	VAL_SOMATIC	CD	stCENANA-859NA41	somatic	PCR_gel_electro.	NA	cd	HIGH	blue	LATE
27	3	85708814	85709181	3	85923865	85924185	-	-	8	0	17	6	(-cd)	3	-	85709083	85709082	T	null	3	+	85924090	85924091	95	0	1	1(subclonal)	cd	may have been lost in 'a' 	VAL_SOMATIC	CD	stCENANA-859NA4NA	somatic	PCR_gel_electro.	215007	cd	HIGH	blue	LATE
28	3	85888504	85888908	16	34288900	34289280	+	-	32	0	24	6	(-cd)	3	+	85888595	85888599	ATAA	null	16	+	34289188	34289192	95	0	1	1(subclonal)	cd	may have been lost in 'a' 	VAL_SOMATIC	CD	stCENANA-859NA39	somatic	PCR_gel_electro.	NA	cd	HIGH	blue	LATE
29	3	86454741	86455094	16	34289569	34289905	-	-	32	0	18	6	(-cd)	3	-	86454992	86454991	G	null	16	+	34289802	34289803	98	0	1	1(subclonal)	cd	may have been lost in 'a' 	VAL_SOMATIC	CD	stCENANA-859NA38	somatic	PCR_gel_electro.	NA	cd	HIGH	blue	LATE
31	3	88749780	88750052	16	34290635	34290954	-	+	32	0	27	3	(-cd)	3	-	88749948	88749947	C	null	16	-	34290728	34290727	100	0	1	1(subclonal)	cd	may have been lost in 'a' 	FAILED_VAL	NA	stCENANA-859NA36	somatic	assoc.copy.num.change	NA	cd	HIGH	blue	LATE
32	3	89208817	89209109	3	103707280	103707688	-	-	8	14	1	7	(acd)	3	-	89209013	89209012	T	null	3	+	103707589	103707590	85	1	0	1	ad	NA	VAL_SOMATIC	AD	stCENANA-859NA73	somatic	PCR_gel_electro.	14498576	ad	HIGH	yellow	LATE
33	3	95568443	95568805	3	147004346	147004631	-	-	8	3	3	10	(acd)	3	-	95568713	95568710	GAA	null	3	+	147004526	147004529	99	1	0	1	ad	NA	FAILED_VAL	NA	stCENANA-859NA84	somatic	assoc.copy.num.change	51435813	ad	HIGH	yellow	LATE
34	3	97968759	97969146	3	105679518	105679908	-	-	8	8	2	6	(acd)	3	-	97969051	0	null	AAATTT	3	+	105679752	0	99	1	0	1	ad	NA	VAL_SOMATIC	AD	stCENANA-859NA72	somatic	PCR_gel_electro.	7710701	ad	HIGH	yellow	LATE
35	3	99006275	99006615	16	6180287	6180723	+	+	32	8	4	8	(acd)	3	+	99006372	0	null	CGC	16	-	6180382	0	95	1	0	1	ad	NA	VAL_SOMATIC	AD	stCENANA-859NA71	somatic	PCR_gel_electro.	NA	ad	HIGH	yellow	LATE
36	3	102174559	102174857	16	20293632	20293929	+	+	32	12	2	11	(acd)	3	+	102174651	102174653	AT	null	16	-	20293739	20293737	95	1	0	1	ad	NA	VAL_SOMATIC	ACD	stCENANA-859NA7NA	somatic	PCR_gel_electro.	NA	ad	HIGH	yellow	LATE
37	3	106329295	106329641	3	175634715	175635090	-	-	8	11	2	8	(acd)	3	-	106329539	106329536	CAG	null	3	+	175634996	175634999	94	1	0	1	ad	NA	VAL_SOMATIC	AD	stCENANA-859NA69	somatic	PCR_gel_electro.	69305457	ad	HIGH	yellow	LATE
38	3	106337600	106338025	16	10164533	10164805	+	-	32	8	1	7	(acd)	3	+	106337692	0	null	AAA	16	+	10164710	0	98	1	0	1	ad	NA	VAL_SOMATIC	AD	stCENANA-859NA67	somatic	PCR_gel_electro.	NA	ad	HIGH	yellow	LATE
39	3	106341315	106341591	3	143263810	143264191	-	-	8	15	1	8	(acd)	3	-	106341481	106341480	C	null	3	+	143264093	143264094	94	1	0	1	ad	NA	VAL_SOMATIC	AD	stCENANA-859NA68	somatic	PCR_gel_electro.	36922612	ad	HIGH	yellow	LATE
40	3	108098911	108099276	3	143188417	143188838	+	+	1	7	1	8	(acd)	3	+	108099009	108099013	TGTT	null	3	-	143188513	143188509	99	1	0	1	ad	NA	VAL_SOMATIC	AD	stCENANA-859NA66	somatic	PCR_gel_electro.	35089504	ad	HIGH	yellow	LATE
41	3	108161655	108162009	16	26936550	26937032	-	-	32	12	1	7	(acd)	3	-	108161916	108161915	A	null	16	+	26936930	26936931	70	1	0	1	ad	NA	FAILED_VAL	NA	stCENANA-858996	somatic	assoc.copy.num.change	NA	ad	HIGH	yellow	LATE
43	3	110834927	110835305	16	25576448	25576778	+	+	32	15	4	13	(acd)	3	+	110835022	0	null	TAACAT	16	-	25576553	0	100	1	0	1	ad	NA	VAL_SOMATIC	ACD	stCENANA-859NA64	somatic	PCR_gel_electro.	NA	ad	HIGH	yellow	LATE
44	3	132929609	132930027	3	134923106	134923448	-	-	8	2	0	7	(a-d)	3	-	132929925	0	null	AA	3	+	134923349	0	97	1	0	1	ad	NA	NOT_SELECTED_FOR_VAL	NA	NA	somatic	assoc.copy.num.change	1993424	ad	HIGH	yellow	LATE
45	3	135036928	135037296	3	136517363	136517741	+	-	2	4	0	3	(a-d)	3	+	135037032	0	null	AATT	3	+	136517645	0	75	1	0	1	ad	NA	NOT_SELECTED_FOR_VAL	NA	NA	somatic	assoc.copy.num.change	1480613	ad	HIGH	yellow	LATE
46	3	135612598	135613028	16	11721363	11721775	+	+	32	9	2	4	(acd)	3	+	135612688	0	null	GGCT	16	-	11721461	0	98	1	0	1	ad	NA	NOT_SELECTED_FOR_VAL	NA	NA	somatic	assoc.copy.num.change	NA	ad	HIGH	yellow	LATE
48	3	137105371	137105733	3	185983716	185984199	+	+	1	8	2	6	(acd)	3	+	137105479	137105481	AA	null	3	-	185983843	185983841	93	1	0	1	ad	NA	VAL_SOMATIC	AD	stCENANA-859NA62	somatic	PCR_gel_electro.	48878364	ad	HIGH	yellow	LATE
49	3	137305653	137305924	3	157972994	157973272	-	+	4	12	1	11	(acd)	3	-	137305825	0	null	GCTAG	3	-	157973095	0	95	1	0	1	ad	NA	VAL_SOMATIC	ACD	stCENANA-858995	somatic	PCR_gel_electro.	20667270	ad	HIGH	yellow	LATE
50	3	142150019	142150366	3	142931725	142932054	+	-	2	10	1	8	(acd)	3	+	142150125	142150128	CAG	null	3	+	142931961	142931964	95	1	0	1	ad	NA	VAL_SOMATIC	A	stCENANA-859NA61	somatic	PCR_gel_electro.	781836	ad	HIGH	yellow	LATE
54	3	144733692	144734023	3	145357940	145358241	+	+	1	4	0	6	(a-d)	3	+	144733826	144733828	TG	null	3	-	145358051	145358049	95	1	0	1	ad	NA	VAL_SOMATIC	AD	stCENANA-859NA6NA	somatic	PCR_gel_electro.	624225	ad	HIGH	yellow	LATE
55	3	145030347	145030657	3	145422553	145422898	-	-	8	8	1	6	(acd)	3	-	145030563	145030559	CTGG	null	3	+	145422800	145422804	94	1	0	1	ad	NA	NOT_SELECTED_FOR_VAL	NA	NA	somatic	assoc.copy.num.change	392237	ad	HIGH	yellow	LATE
57	3	146754856	146755261	3	175233106	175233473	+	-	2	9	0	5	(a-d)	3	+	146754944	0	null	AGGCTGTGATCCAGATAGCTACATTTATCAT	3	+	175233364	0	95	1	0	1	ad	NA	VAL_SOMATIC	ACD	stCENANA-859NA82	somatic	PCR_gel_electro.	28478420	ad	HIGH	yellow	LATE
58	3	147291833	147292209	3	147499483	147499788	+	-	2	10	3	10	(acd)	3	+	147291922	147291926	GCTT	null	3	+	147499694	147499698	94	1	0	1	ad	NA	FAILED_VAL	NA	stCENANA-859NA59	somatic	assoc.copy.num.change	207772	ad	HIGH	yellow	LATE
59	3	147706449	147706732	3	147993322	147993753	+	-	2	7	0	12	(a-d)	3	+	147706546	147706549	TTC	null	3	+	147993655	147993658	65	1	0	1	ad	NA	FAILED_VAL	NA	stCENANA-859NA58	somatic	assoc.copy.num.change	287109	ad	HIGH	yellow	LATE
60	3	150685559	150685995	3	173805214	173805548	+	-	2	9	0	6	(a-d)	3	+	150685653	0	null	TCT	3	+	173805448	0	95	1	0	1	ad	NA	VAL_SOMATIC	AD	stCENANA-859NA57	somatic	PCR_gel_electro.	23119795	ad	HIGH	yellow	LATE
61	3	150685390	150685764	16	18314187	18314532	-	-	32	4	2	2	(acd)	3	-	150685668	150685664	TGAG	null	16	+	18314434	18314438	99	1	0	0	a	NA	NOT_SELECTED_FOR_VAL	NA	NA	somatic	assoc.copy.num.change	NA	a	HIGH	red	LATE
62	3	161872865	161873287	16	8823911	8824340	+	-	32	4	3	3	(acd)	3	+	161872965	0	null	AG	16	+	8824245	0	98	1	0	1	ad	NA	VAL_SOMATIC	ACD	stCENANA-858994	somatic	PCR_gel_electro.	NA	ad	HIGH	yellow	LATE
63	3	162807824	162808226	3	163136996	163137478	-	+	4	11	1	3	(acd)	3	-	162808121	0	null	CATGTGC	3	-	163137138	0	98	1	0	1	ad	NA	VAL_SOMATIC	AD	stCENANA-858993	somatic	PCR_gel_electro.	329017	ad	HIGH	yellow	LATE
64	3	163544421	163544775	3	170022626	170022963	-	+	4	7	2	10	(acd)	3	-	163544674	0	null	TATAAATAATTTATAAG	3	-	170022719	0	95	1	0	1	ad	NA	VAL_SOMATIC	D	stCENANA-859NA56	somatic	PCR_gel_electro.	6478045	ad	HIGH	yellow	LATE
65	3	164046120	164046495	3	165129595	165129969	+	+	1	11	1	6	(acd)	3	+	164046221	0	null	ACATG	3	-	165129692	0	93	1	0	1	ad	NA	VAL_SOMATIC	AD	stCENANA-859NA81	somatic	PCR_gel_electro.	1083471	ad	HIGH	yellow	LATE
66	3	164790667	164790999	3	165317262	165317699	-	-	8	6	0	5	(a-d)	3	-	164790900	0	null	CAACCTTCTCCA	3	+	165317604	0	91	1	0	1	ad	NA	VAL_SOMATIC	D	stCENANA-859NA55	somatic	PCR_gel_electro.	526704	ad	HIGH	yellow	LATE
67	3	165813016	165813305	3	166507634	166507982	+	-	2	14	1	8	(acd)	3	+	165813117	0	null	TTATTTAT	3	+	166507884	0	92	1	0	1	ad	NA	VAL_SOMATIC	ACD	stCENANA-859NA8NA	somatic	PCR_gel_electro.	694767	ad	HIGH	yellow	LATE
68	3	167373114	167373462	3	179916608	179917023	+	+	1	7	0	5	(a-d)	3	+	167373207	0	null	GCTTCT	3	-	179916710	0	89	1	0	1	ad	NA	VAL_SOMATIC	D	stCENANA-859NA54	somatic	PCR_gel_electro.	12543503	ad	HIGH	yellow	LATE
69	3	173370270	173370564	3	175097475	175097766	+	+	1	6	5	6	(acd)	3	+	173370365	0	null	AG	3	-	175097567	0	99	1	0	1	ad	NA	NOT_SELECTED_FOR_VAL	NA	NA	somatic	assoc.copy.num.change	1727202	ad	HIGH	yellow	LATE
70	4	31735548	31735978	4	31737520	31737955	-	-	8	0	8	0	(-c-)	4	-	31735827	31735824	GTC	null	4	+	31737861	31737864	98	0	1	0	c	NA	NOT_SELECTED_FOR_VAL	NA	NA	somatic	assoc.copy.num.change	2034	c	HIGH	purple	LATE
71	4	33528154	33528509	5	22789094	22789549	+	+	32	0	8	0	(-c-)	4	+	33528270	0	null	null	5	-	22789187	0	100	0	1	0	c	NA	NOT_SELECTED_FOR_VAL	NA	NA	somatic	assoc.copy.num.change	NA	c	HIGH	purple	LATE
73	4	149572681	149572984	4	151013937	151014321	-	+	4	12	4	8	(acd)	4	-	149572890	149572889	T	null	4	-	151014028	151014027	93	1	0	1	ad	NA	VAL_SOMATIC	D	stCENANA-859NA53	somatic	PCR_gel_electro.	1441138	ad	HIGH	yellow	LATE
76	5	16227552	16227971	5	27222218	27222709	+	+	1	0	5	0	(-c-)	5	+	16227674	0	null	null	5	-	27222369	0	99	0	1	0	c	NA	FAILED_VAL	NA	stCENANA-859NA35	somatic	assoc.copy.num.change	10994695	c	HIGH	purple	LATE
77	5	22475492	22475906	8	33566054	33566506	+	-	32	0	9	2	(-cd)	5	+	22475594	22475595	T	null	8	+	33566389	33566390	100	0	1	1(subclonal)	cd	NA	FAILED_VAL	NA	stCENANA-859NA34	somatic	assoc.copy.num.change	NA	cd	HIGH	blue	LATE
79	5	26977803	26978190	5	27959258	27959696	-	-	8	0	11	1	(-cd)	5	-	26978087	26978086	T	null	5	+	27959572	27959573	92	0	1	0	c	NA	FAILED_VAL	NA	stCENANA-859NA33	somatic	assoc.copy.num.change	981485	c	HIGH	purple	LATE
80	5	27693475	27693827	10	55882857	55883287	-	-	32	0	12	0	(-c-)	5	-	27693750	0	null	CCTTCCCAAATTGATGGGATTAC	10	+	55883153	0	99	0	1	0	c	NA	VAL_SOMATIC	C	stCENANA-859NA32	somatic	PCR_gel_electro.	NA	c	HIGH	purple	LATE
81	5	27805205	27805717	5	27962547	27962951	+	-	2	0	5	0	(-c-)	5	+	27805383	0	null	null	5	+	27962844	0	93	0	1	0	c	NA	VAL_SOMATIC	C	stCENANA-859NA31	somatic	PCR_gel_electro.	157461	c	HIGH	purple	LATE
82	5	27861548	27861859	5	27961930	27962277	-	+	4	0	18	0	(-c-)	5	-	27861763	27861762	T	null	5	-	27962019	27962018	98	0	1	0	c	NA	FAILED_VAL	NA	stCENANA-859NA3NA	somatic	assoc.copy.num.change	100256	c	HIGH	purple	LATE
85	5	129431408	129431746	5	129437614	129438092	+	-	2	0	9	1	(-cd)	5	+	129431521	129431522	C	null	5	+	129437971	129437972	94	0	1	0	c	NA	NOT_SELECTED_FOR_VAL	NA	NA	somatic	assoc.copy.num.change	6450	c	HIGH	purple	LATE
87	5	171300502	171300951	5	175581601	175581906	+	-	2	0	1	11	(-cd)	5	+	171300601	171300604	TGC	null	5	+	175581811	175581814	95	0	0	0	na	"(d)del and td in same place, no cn change"	NOT_SELECTED_FOR_VAL	NA	NA	unconfirmed	assoc.copy.num.change	4281210	d	MEDIUM	green	NA
88	5	171782533	171782976	5	175579299	175579790	-	+	4	0	0	4	(--d)	5	-	171782856	0	null	null	5	-	175579405	0	100	0	0	0	na	"(d)del and td in same place, no cn change"	NOT_SELECTED_FOR_VAL	NA	NA	unconfirmed	assoc.copy.num.change	3796549	d	MEDIUM	green	NA
92	6	99121872	99122219	7	145663829	145664093	+	-	32	15	3	10	(acd)	6	+	99121961	99121963	AT	null	7	+	145663999	145664001	95	1	0	1	ad	NA	NOT_SELECTED_FOR_VAL	NA	NA	somatic	assoc.copy.num.change	NA	ad	HIGH	yellow	LATE
93	6	99302519	99302773	13	87294090	87294497	+	-	32	0	12	3	(-cd)	6	+	99302637	99302641	TCTT	null	13	+	87294396	87294400	100	0	1	1(subclonal)	cd	NA	VAL_SOMATIC	CD	stCENANA-859NA29	somatic	PCR_gel_electro.	NA	cd	HIGH	blue	LATE
97	7	11411151	11411411	8	36499286	36499633	+	-	32	10	1	13	(acd)	7	+	11411249	0	null	C	8	+	36499528	0	93	1	0	1(subclonal)	ad	NA	NOT_SELECTED_FOR_VAL	NA	NA	somatic	assoc.copy.num.change	NA	ad	HIGH	yellow	LATE
100	8	36203069	36203336	8	36206110	36206372	-	-	8	47	4	37	(acd)	8	-	36203249	36203247	TG	null	8	+	36206276	36206278	95	1	1	1	acd	NA	NOT_SELECTED_FOR_VAL	NA	NA	somatic	assoc.copy.num.change	3027	acd	HIGH	grey	EARLY
101	8	36486617	36486882	8	36501386	36501688	+	+	1	13	1	11	(acd)	8	+	36486704	36486706	AA	null	8	-	36501490	36501488	93	1	0	1	ad	NA	VAL_SOMATIC	D	stCENANA-859NA51	somatic	PCR_gel_electro.	14786	ad	HIGH	yellow	LATE
103	8	38208127	38208513	8	38239181	38239600	-	-	8	8	2	6	(acd)	8	-	38208415	38208411	GCAC	null	8	+	38239506	38239510	87	1	1	1	acd	NA	FAILED_VAL	NA	stCENANA-859NA5NA	somatic	assoc.copy.num.change	31091	acd	HIGH	grey	EARLY
104	8	38369885	38370202	8	38395115	38395392	-	+	4	18	2	14	(acd)	8	-	38370103	0	null	A	8	-	38395209	0	92	1	0	1	ad	NA	NOT_SELECTED_FOR_VAL	NA	NA	somatic	assoc.copy.num.change	25106	ad	HIGH	yellow	LATE
105	8	38824272	38824560	8	38825759	38825968	+	+	1	63	8	24	(acd)	8	+	38824361	38824363	GA	null	8	-	38825850	38825848	89	1	1	1	acd	NA	FAILED_VAL	NA	stCENANA-859NA48	somatic	assoc.copy.num.change	1489	acd	HIGH	grey	EARLY
106	8	63502025	63502383	8	64754448	64754922	-	+	4	0	9	0	(-c-)	8	-	63502269	63502266	ATA	null	8	-	64754547	64754544	84	0	1	0	c	NA	FAILED_VAL	NA	stCENANA-859NA28	somatic	assoc.copy.num.change	1252278	c	HIGH	purple	LATE
108	8	93654314	93654574	9	87834853	87835239	-	+	32	15	0	6	(a-d)	8	-	93654449	93654448	C	null	9	-	87834953	87834952	98	1	0	1	ad	NA	FAILED_VAL	NA	stCENANA-859NA48	somatic	assoc.copy.num.change	NA	ad	HIGH	yellow	LATE
109	8	116767613	116768157	8	117034734	117035124	-	+	4	0	8	0	(-c-)	8	-	116768013	116768012	T	null	8	-	117034827	117034826	100	0	1	0	c	NA	NOT_SELECTED_FOR_VAL	NA	NA	somatic	assoc.copy.num.change	266814	c	HIGH	purple	LATE
110	8	122712878	122713234	11	22599195	22599620	-	+	32	0	8	0	(-c-)	8	-	122713134	122713131	TTT	null	11	-	22599315	22599312	99	0	1	0	c	NA	VAL_SOMATIC	C	stCENANA-859NA27	somatic	PCR_gel_electro.	NA	c	HIGH	purple	LATE
114	10	31301201	31301792	10	35870974	35871415	+	+	1	3	1	4	(acd)	10	+	31301274	31301286	ATCTCCTGACCT	null	10	-	35871144	35871132	99	0	0	0	na	inv	NOT_SELECTED_FOR_VAL	NA	NA	unconfirmed	assoc.copy.num.change	4569870	ad	MEDIUM	NA	NA
115	10	55883753	55884053	10	55885714	55886063	+	+	1	0	15	1	(-cd)	10	+	55883854	55883855	A	null	10	-	55885818	55885817	95	0	1	0	c	NA	FAILED_VAL	NA	stCENANA-859NA26	somatic	assoc.copy.num.change	1964	c	HIGH	purple	LATE
116	10	87370014	87370286	10	100629325	100629695	+	-	2	12	0	6	(a-d)	10	+	87370106	0	null	null	10	+	100629591	0	94	1	0	1	ad	"LOH across this locus in all samples, so either this event was early or the 5' event in c occurred in all red subclone cells and this event occurred in all yellow subclone cells"	NOT_SELECTED_FOR_VAL	NA	NA	somatic	assoc.copy.num.change	13259485	ad	HIGH	grey	LATE
118	11	22404275	22404588	11	94230680	94231053	+	-	2	0	8	0	(-c-)	11	+	22404361	22404365	GACT	null	11	+	94230942	94230946	95	0	1	0	c	NA	VAL_SOMATIC	C	stCENANA-859NA25	somatic	PCR_gel_electro.	71826581	c	HIGH	purple	LATE
119	11	22436856	22437214	11	22439705	22440156	-	-	8	0	22	1	(-cd)	11	-	22437120	22437118	AC	null	11	+	22440056	22440058	100	0	1	0	c	NA	NOT_SELECTED_FOR_VAL	NA	NA	somatic	assoc.copy.num.change	2936	c	HIGH	purple	LATE
120	11	22743911	22744254	11	22780620	22780956	-	-	8	0	21	1	(-cd)	11	-	22744151	22744148	TAC	null	11	+	22780843	22780846	99	0	1	0	c	NA	VAL_SOMATIC	C	stCENANA-859NA24	somatic	PCR_gel_electro.	36692	c	HIGH	purple	LATE
121	11	23160886	23161234	11	23169126	23169495	+	-	2	0	17	0	(-c-)	11	+	23161001	23161002	C	null	11	+	23169388	23169389	100	0	1	0	c	NA	VAL_SOMATIC	C	stCENANA-859NA23	somatic	PCR_gel_electro.	8387	c	HIGH	purple	LATE
122	11	23169404	23169875	11	23170448	23170923	+	+	1	0	8	0	(-c-)	11	+	23169529	0	null	TAAAGAGTAGGGATTATAT	11	-	23170546	0	93	0	1	0	c	NA	VAL_SOMATIC	C	stCENANA-859NA22	somatic	PCR_gel_electro.	1017	c	HIGH	purple	LATE
124	11	55122544	55122897	22	29065484	29066009	+	-	32	0	7	3	(-cd)	11	+	55122667	0	null	GA	22	+	29065907	0	100	0	0	0	na	translocation	NOT_SELECTED_FOR_VAL	NA	NA	unconfirmed	assoc.copy.num.change	NA	cd	MEDIUM	blue	NA
126	11	94233400	94233811	11	94235229	94235695	+	+	1	0	12	0	(-c-)	11	+	94233552	94233555	ATT	null	11	-	94235323	94235320	98	0	1	0	c	NA	FAILED_VAL	NA	stCENANA-859NA2NA	somatic	assoc.copy.num.change	1771	c	HIGH	purple	LATE
128	12	69767851	69768168	12	71870115	71870559	-	-	8	0	9	1	(-cd)	12	-	69768076	69768073	GAA	null	12	+	71870466	71870469	89	0	1	0	c	NA	FAILED_VAL	NA	stCENANA-859NA19	somatic	assoc.copy.num.change	2102390	c	HIGH	purple	LATE
129	12	71705449	71705930	12	71973721	71974198	-	+	4	0	11	0	(-c-)	12	-	71705747	71705745	TT	null	12	-	71973822	71973820	98	0	1	0	c	part of complex event	FAILED_VAL	NA	stCENANA-859NA18	somatic	assoc.copy.num.change	268075	c	HIGH	purple	LATE
130	12	71709788	71710154	12	72785599	72786022	+	-	2	0	8	0	(-c-)	12	+	71709850	0	null	GAAATTGTTTCATTTTAATTAATATGCAGGGTTTT	12	+	72785864	0	95	0	1	0	c	NA	VAL_SOMATIC	C	stCENANA-859NA17	somatic	PCR_gel_electro.	1076014	c	HIGH	purple	LATE
131	12	71866591	71866985	12	72703598	72703933	-	+	4	0	9	0	(-c-)	12	-	71866892	0	null	C	12	-	72703693	0	100	0	1	0	c	NA	FAILED_VAL	NA	stCENANA-859NA16	somatic	assoc.copy.num.change	836801	c	HIGH	purple	LATE
132	12	71870282	71870789	12	77296986	77297308	+	-	2	0	12	0	(-c-)	12	+	71870377	0	null	null	12	+	77297165	0	99	0	1	0	c	NA	VAL_SOMATIC	C	stCENANA-859NA15	somatic	PCR_gel_electro.	5426788	c	HIGH	purple	LATE
133	12	71888748	71889102	12	72850970	72851399	+	+	1	0	6	0	(-c-)	12	+	71888862	0	null	null	12	-	72851066	0	100	0	1	0	c	NA	VAL_SOMATIC	C	stCENANA-859NA14	somatic	PCR_gel_electro.	962204	c	HIGH	purple	LATE
134	12	71970086	71970625	12	72691314	72691822	-	+	4	0	8	0	(-c-)	12	-	71970526	0	null	AAACAACTCTCTTGTTTCAGTGTTTATGGCTTTTACTATTCCTATTTTCTACCTGGCCTTGCAGGTGACACTG	12	-	72691370	0	92	0	1	0	c	NA	VAL_SOMATIC	C	stCENANA-859NA13	somatic	PCR_gel_electro.	720844	c	HIGH	purple	LATE
135	12	72689367	72689834	12	77409242	77409744	-	-	8	0	4	0	(-c-)	12	-	72689705	72689704	A	null	12	+	77409584	77409585	84	0	0	0	na	inv	NOT_SELECTED_FOR_VAL	NA	NA	unconfirmed	assoc.copy.num.change	4719879	c	MEDIUM	purple	NA
136	12	72697779	72698268	12	84270010	84270336	-	+	4	0	10	0	(-c-)	12	-	72698171	72698170	A	null	12	-	84270106	84270105	89	0	1	0	c	NA	FAILED_VAL	NA	stCENANA-859NA12	somatic	assoc.copy.num.change	11571935	c	HIGH	purple	LATE
137	12	72790371	72790828	12	84793531	84793824	+	-	2	0	12	0	(-c-)	12	+	72790463	72790464	C	null	12	+	84793675	84793676	97	0	1	0	c	NA	NOT_SELECTED_FOR_VAL	NA	NA	somatic	assoc.copy.num.change	12003212	c	HIGH	purple	LATE
138	12	72798513	72798742	18	13658700	13659134	-	+	32	0	12	1	(-cd)	12	-	72798646	72798643	AAA	null	18	-	13658811	13658808	99	0	1	0	c	NA	VAL_SOMATIC	C	stCENANA-859NA11	somatic	PCR_gel_electro.	NA	c	HIGH	purple	LATE
139	12	72823861	72824311	12	72896597	72896973	+	-	2	0	11	0	(-c-)	12	+	72823962	72823963	T	null	12	+	72896871	72896872	99	0	1	0	c	NA	FAILED_VAL	NA	stCENANA-859NA1NA	somatic	assoc.copy.num.change	72909	c	HIGH	purple	LATE
140	12	72837223	72837634	12	74345501	74345873	-	+	4	0	13	1	(-cd)	12	-	72837533	0	null	null	12	-	74345611	0	94	0	1	0	c	NA	FAILED_VAL	NA	stCENANA-859NANA9	somatic	assoc.copy.num.change	1508078	c	HIGH	purple	LATE
141	12	77299935	77300245	12	77406635	77407066	+	-	2	0	11	0	(-c-)	12	+	77300030	77300033	AAA	null	12	+	77406970	77406973	98	0	1	0	c	"LOOKS MORE LIKE A GAIN, COMPLEX EVENTS"	FAILED_VAL	NA	stCENANA-859NANA8	somatic	assoc.copy.num.change	106940	c	HIGH	purple	LATE
143	12	77400551	77400996	12	83783149	83783628	+	-	2	0	9	0	(-c-)	12	+	77400661	77400664	TGT	null	12	+	83783491	83783494	95	0	1	0	c	NA	FAILED_VAL	NA	stCENANA-859NANA6	somatic	assoc.copy.num.change	6382830	c	HIGH	purple	LATE
144	12	77409066	77409432	12	84303120	84303528	+	+	1	0	8	0	(-c-)	12	+	77409169	77409173	TTAT	null	12	-	84303245	84303241	94	0	1	0	c	NA	FAILED_VAL	NA	stCENANA-859NANA5	somatic	assoc.copy.num.change	6894076	c	HIGH	purple	LATE
145	12	83767265	83767642	12	84759907	84760356	+	+	1	0	8	0	(-c-)	12	+	83767372	0	null	null	12	-	84760010	0	99	0	1	0	c	NA	NOT_SELECTED_FOR_VAL	NA	NA	somatic	assoc.copy.num.change	992638	c	HIGH	purple	LATE
146	12	90441660	90441921	12	90456883	90457112	-	+	4	0	286	9	(-cd)	12	-	90441831	90441829	AA	null	12	-	90456973	90456971	95	0	1	1(SUBCLONAL)	cd	NA	VAL_SOMATIC	C	stCENANA-859NANA4	somatic	PCR_gel_electro.	15142	cd	HIGH	blue	LATE
147	12	90443153	90443626	12	90447160	90447541	+	+	1	0	12	0	(-c-)	12	+	90443275	0	null	null	12	-	90447278	0	91	0	1	1(SUBCLONAL)	cd	NA	FAILED_VAL	NA	stCENANA-859NANA3	somatic	assoc.copy.num.change	4003	cd	HIGH	blue	LATE
148	12	133338815	133339169	12	133347916	133348296	-	-	8	12	0	1	(a-d)	12	-	133339065	133339064	G	null	12	+	133348188	133348189	99	1	0	0	a	NA	NOT_SELECTED_FOR_VAL	NA	NA	somatic	assoc.copy.num.change	9123	a	HIGH	red	LATE
149	12	133343729	133344229	12	133839326	133839790	+	+	1	5	0	0	(a--)	12	+	133343824	0	null	null	12	-	133839582	0	88	1	0	0	a	NA	NOT_SELECTED_FOR_VAL	NA	NA	somatic	assoc.copy.num.change	495758	a	HIGH	red	LATE
153	16	5569974	5570289	16	10182833	10183141	+	-	2	15	0	8	(a-d)	16	+	5570066	0	null	null	16	+	10183032	0	97	1	0	1	ad	NA	NOT_SELECTED_FOR_VAL	NA	NA	somatic	assoc.copy.num.change	4612966	ad	HIGH	yellow	LATE
154	16	5800278	5800649	16	10179155	10179474	-	+	4	5	3	6	(acd)	16	-	5800538	0	null	TATTTGTTTG	16	-	10179245	0	99	1	0	1	ad	NA	NOT_SELECTED_FOR_VAL	NA	NA	somatic	assoc.copy.num.change	4378707	ad	HIGH	yellow	LATE
155	16	11781473	11781814	16	12267700	12268010	-	+	4	14	3	11	(acd)	16	-	11781725	11781723	CA	null	16	-	12267794	12267792	100	1	0	1	ad	NA	NOT_SELECTED_FOR_VAL	NA	NA	somatic	assoc.copy.num.change	486069	ad	HIGH	yellow	LATE
156	16	13506231	13506620	16	18293652	18293981	-	+	4	8	1	6	(acd)	16	-	13506513	0	null	A	16	-	18293755	0	94	1	0	1	ad	NA	NOT_SELECTED_FOR_VAL	NA	NA	somatic	assoc.copy.num.change	4787242	ad	HIGH	yellow	LATE
160	19	37958334	37958837	19	39217360	39217688	-	+	4	0	12	0	(-c-)	19	-	37958735	37958734	C	null	19	-	39217485	39217484	93	0	1	0	c	NA	VAL_SOMATIC	C	stCENANA-859NANA2	somatic	PCR_gel_electro.	1258750	c	HIGH	purple	LATE
161	20	50315117	50315557	20	53776999	53777465	-	+	4	7	0	0	(a--)	20	-	50315460	0	null	null	20	-	53777137	0	99	1	0	0	a	NA	NOT_SELECTED_FOR_VAL	NA	NA	somatic	assoc.copy.num.change	3461677	a	HIGH	red	LATE
165	X	81952573	81952961	X	81959411	81959785	+	-	2	0	12	0	(-c-)	X	+	81952667	81952671	ATTT	null	X	+	81959636	81959640	98	0	1	0	c	NA	FAILED_VAL	NA	stCENANA-859NANA1	somatic	assoc.copy.num.change	6969	c	HIGH	red	LATE
166	X	149935939	149936320	X	149938614	149938914	+	-	2	9	2	7	(acd)	X	+	149936044	149936047	ACA	null	X	+	149938790	149938793	94	1	0	1	ad	NA	NOT_SELECTED_FOR_VAL	NA	NA	somatic	assoc.copy.num.change	2746	ad	HIGH	yellow	LATE
167	X	149940369	149940635	X	149954834	149955202	+	-	2	9	0	9	(a-d)	X	+	149940464	149940465	A	null	X	+	149955097	149955098	100	1	0	1	ad	NA	NOT_SELECTED_FOR_VAL	NA	NA	somatic	assoc.copy.num.change	14633	ad	HIGH	yellow	LATE