id	chrl	l5	l3	chrh	h5	h3	stl	sth	paired.Flag	PD9769a	PD9769c	brass1.presence.summary	brass2_chr_from	brass2_strand_from	brass2_loc_from_min	brass2_loc_from_max	brass2_microhomology	brass2_nontemplated_insertion	brass2_chr_to	brass2_strand_to	brass2_loc_to_min	brass2_loc_to_max	brass2_score	distance.between.breakpoints	CN_A	CN_C	CN.presence.regions	val.verdict	val.platform	CONFIDENCE	consensus.regions	color	TIMING
4	1	66593563	66593973	1	66996801	66997280	-	+	4	5	0	(a-)	1	-	66593863	66593861	GA	null	1	-	66996961	66996959	97	403098	1	0	a	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	a	blue	LATE
5	1	66804011	66804553	16	51754736	51755229	-	-	32	5	9	(ac)	1	-	66804421	66804419	CA	null	16	+	51754952	51754954	97	NA	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
6	1	78633871	78634125	1	78665871	78666167	+	-	2	29	14	(ac)	1	+	78633962	78633969	TTAAAGC	null	1	+	78666051	78666058	99	32089	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
19	1	146537321	146537632	1	184554924	184555213	-	+	4	23	18	(ac)	1	-	146537537	146537535	CA	null	1	-	184555020	184555018	91	38017483	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
20	1	146672732	146673042	1	186966475	186966809	+	+	1	20	13	(ac)	1	+	146672843	0	null	ACTG	1	-	186966572	0	99	40293729	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
23	1	149334109	149334619	1	180370059	180370434	-	-	8	11	6	(ac)	1	-	149334500	0	null	TAAATTTAA	1	+	180370274	0	100	31035774	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
25	1	150120128	150120417	1	151479965	151480271	+	+	1	24	24	(ac)	1	+	150120218	150120223	ATTTT	null	1	-	151480063	151480058	99	1359845	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
26	1	150491882	150492120	1	189171887	189172182	+	-	2	29	15	(ac)	1	+	150491973	150491975	AT	null	1	+	189172087	189172089	99	38680114	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
27	1	151462958	151463268	1	203682947	203683268	-	-	8	18	13	(ac)	1	-	151463162	0	null	A	1	+	203683163	0	98	52220001	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
28	1	151522273	151522552	1	232900613	232900878	-	-	8	19	15	(ac)	1	-	151522461	151522457	TTTG	null	1	+	232900785	232900789	100	81378324	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
29	1	151990087	151990542	1	152280084	152280514	+	+	1	7	5	(ac)	1	+	151990181	0	null	CATGGG	1	-	152280340	0	100	290159	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
30	1	152070710	152070998	1	154696917	154697188	-	+	4	19	17	(ac)	1	-	152070903	0	null	AAAC	1	-	154697012	0	94	2626109	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
31	1	152456391	152456695	1	200968906	200969239	-	-	8	14	12	(ac)	1	-	152456583	152456582	A	null	1	+	200969143	200969144	100	48512560	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
32	1	154273156	154273450	1	154923981	154924279	-	+	4	17	7	(ac)	1	-	154273356	154273352	GACA	null	1	-	154924078	154924074	99	650722	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
33	1	154575899	154576230	1	160582162	160582461	-	-	8	24	10	(ac)	1	-	154576132	154576129	CTG	null	1	+	160582362	160582365	100	6006230	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
35	1	155149349	155149698	1	157228213	157228539	-	+	4	11	6	(ac)	1	-	155149603	0	null	TAAACGTCACCATTTTACT	1	-	157228328	0	100	2078725	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
36	1	155775706	155775993	1	156944113	156944433	+	-	2	26	13	(ac)	1	+	155775806	155775809	GTC	null	1	+	156944325	156944328	98	1168519	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
38	1	156530634	156530927	1	161461542	161461846	-	+	4	23	11	(ac)	1	-	156530839	156530835	CTAC	null	1	-	161461636	161461632	85	4930797	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
39	1	156992632	156992977	1	157203231	157203564	-	+	4	25	9	(ac)	1	-	156992833	156992830	TTT	null	1	-	157203327	157203324	94	210494	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
41	1	157460073	157460428	1	234619013	234619349	+	-	2	23	17	(ac)	1	+	157460172	0	null	ATT	1	+	234619252	0	98	77159080	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
42	1	158443775	158444126	1	223921240	223921547	-	-	8	29	5	(ac)	1	-	158444013	158444010	GAA	null	1	+	223921448	223921451	85	65477435	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
43	1	158688026	158688394	1	204139540	204139884	+	+	1	15	15	(ac)	1	+	158688119	0	null	CTAGAAGCAAACTCATGAACAGAAGTTAGTAATCACAAATAGTATAGTGTGATTATTTGCCC	1	-	204139633	0	98	45451514	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
46	1	161124996	161125271	1	203246517	203246795	+	+	1	18	12	(ac)	1	+	161125088	161125094	AGCCAA	null	1	-	203246615	203246609	100	42121527	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
47	1	162008762	162009104	1	202843262	202843646	-	+	4	21	13	(ac)	1	-	162008988	0	null	null	1	-	202843362	0	98	40834374	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
48	1	163155333	163155666	1	164821226	164821569	+	-	2	21	8	(ac)	1	+	163155448	163155454	GTTCCC	null	1	+	164821474	164821480	100	1666026	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
49	1	165306504	165306768	1	166479485	166479779	+	+	1	16	12	(ac)	1	+	165306601	165306604	TGA	null	1	-	166479578	166479575	93	1172977	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
50	1	167350057	167350384	1	207235676	207235991	-	-	8	22	7	(ac)	1	-	167350283	167350282	A	null	1	+	207235887	207235888	97	39885604	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
52	1	168699760	168700135	1	238777814	238778123	-	-	8	12	3	(ac)	1	-	168699994	0	null	null	1	+	238778026	0	96	70078032	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
53	1	169137440	169137712	1	208772696	208772971	+	+	1	23	9	(ac)	1	+	169137534	0	null	null	1	-	208772790	0	99	39635256	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
54	1	170596331	170596656	1	206226908	206227203	-	+	4	18	14	(ac)	1	-	170596556	0	null	GCTCCAGTTATGTACATAACTGCT	1	-	206227003	0	100	35630447	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
56	1	173748574	173748880	1	174120350	174120713	-	+	4	30	10	(ac)	1	-	173748778	0	null	GTT	1	-	174120467	0	99	371689	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
57	1	174491181	174491514	1	175511470	175511842	-	-	8	14	13	(ac)	1	-	174491402	174491399	CCT	null	1	+	175511721	175511724	99	1020319	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
58	1	174692652	174692969	1	226835704	226836021	+	+	1	24	11	(ac)	1	+	174692755	0	null	CCACACCTGGTAA	1	-	226835811	0	100	52143056	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
59	1	175683717	175684073	1	180323125	180323390	+	+	1	23	4	(ac)	1	+	175683807	175683811	GGAA	null	1	-	180323222	180323218	98	4639415	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
61	1	182744481	182744769	1	186814991	186815337	-	-	8	41	23	(ac)	1	-	182744675	0	null	TA	1	+	186815240	0	99	4070565	0	0	na	no.cn.change	no.cn.change	MEDIUM	na	grey	NA
62	1	183596042	183596431	1	192833245	192833627	+	+	1	17	5	(ac)	1	+	183596134	0	null	GTGTGGGTGTGTGTGTGTGTGTGTAAATATTTAGTCTACAACAAACCCTGACTAGCATAACCATACT	1	-	192833346	0	99	9237212	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
64	1	189312172	189312440	1	231865197	231865510	+	-	2	48	23	(ac)	1	+	189312264	189312266	TA	null	1	+	231865415	231865417	99	42553151	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
65	1	190944978	190945262	1	191024968	191025225	-	-	8	30	20	(ac)	1	-	190945168	0	null	TGACTCAAA	1	+	191025133	0	98	79965	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
66	1	191011110	191011411	20	48709633	48709914	+	-	32	47	23	(ac)	1	+	191011203	0	null	CATTACCTGCTTTG	20	+	48709820	0	99	NA	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
69	1	192019772	192020109	1	202716335	202716584	-	-	8	21	9	(ac)	1	-	192020017	0	null	AATATTACTAAGGGCAGTAAGT	1	+	202716492	0	98	10696475	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
70	1	193499529	193499794	1	193729788	193730068	-	+	4	22	10	(ac)	1	-	193499701	193499697	ATAT	null	1	-	193729887	193729883	84	230186	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
73	1	200111198	200111520	1	201935811	201936146	-	+	4	11	8	(ac)	1	-	200111413	0	null	null	1	-	201935925	0	96	1824512	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
74	1	201210120	201210413	1	201380915	201381215	-	+	4	28	8	(ac)	1	-	201210320	201210319	C	null	1	-	201381010	201381009	99	170690	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
75	1	206992428	206992770	1	207768916	207769263	+	+	1	16	8	(ac)	1	+	206992527	0	null	TATATATATATATA	1	-	207769034	0	93	776507	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
77	1	225648442	225648767	1	225694701	225695040	-	+	4	20	12	(ac)	1	-	225648675	225648673	GC	null	1	-	225694809	225694807	99	46134	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
78	1	231756041	231756348	1	233278153	233278433	-	+	4	19	14	(ac)	1	-	231756248	231756247	T	null	1	-	233278254	233278253	99	1522006	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
79	1	233881677	233881941	1	239195671	239195961	+	+	1	23	13	(ac)	1	+	233881770	0	null	GAATACT	1	-	239195759	0	99	5313989	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
81	1	234871222	234871528	1	235328129	235328390	-	+	4	47	27	(ac)	1	-	234871427	234871423	TGAC	null	1	-	235328226	235328222	99	456799	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
83	1	235526628	235526955	1	236736885	236737171	+	-	2	12	9	(ac)	1	+	235526714	235526718	GGTG	null	1	+	236737058	236737062	99	1210344	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
84	1	236263049	236263342	1	236650719	236650978	-	+	4	20	11	(ac)	1	-	236263248	0	null	G	1	-	236650816	0	98	387568	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
87	1	240838593	240839086	1	246661763	246662191	+	-	2	0	6	(-c)	1	+	240838735	240838739	GGAG	null	1	+	246661965	246661969	85	5823230	0	1	c	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	c	yellow	LATE
89	1	244920368	244920631	1	245490823	245491118	-	+	4	42	23	(ac)	1	-	244920539	244920536	TCA	null	1	-	245490914	245490911	97	570375	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
90	1	246045474	246045781	1	246402334	246402639	-	+	4	28	18	(ac)	1	-	246045692	246045690	GA	null	1	-	246402428	246402426	100	356736	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
91	1	246654954	246655290	22	36355577	36355874	-	+	32	0	14	(-c)	1	-	246655197	0	null	AGATAGTGG	22	-	36355677	0	99	NA	0	1	c	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	c	yellow	LATE
93	2	38647519	38647956	2	38759063	38759491	-	+	4	10	0	(a-)	2	-	38647775	38647772	CCT	null	2	-	38759162	38759159	98	111387	1	0	a	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	a	blue	LATE
94	2	47028117	47028445	2	47201238	47201594	-	+	4	17	0	(a-)	2	-	47028332	0	null	TTATTCCA	2	-	47201327	0	99	172995	1	0	a	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	a	blue	LATE
106	2	114344012	114344460	10	87138309	87138721	+	-	32	17	12	(ac)	2	+	114344161	114344162	A	null	10	+	87138594	87138595	66	NA	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
109	2	120185060	120185384	2	120330344	120330688	-	+	4	0	7	(-c)	2	-	120185256	0	null	TTAATGTTGTTAATGTTGTTAATGTT	2	-	120330445	0	100	145189	0	1	c	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	c	yellow	LATE
112	2	141677566	141677958	2	141842211	141842550	+	-	2	16	0	(a-)	2	+	141677707	141677709	GA	null	2	+	141842448	141842450	100	164741	1	0	a	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	a	blue	LATE
114	2	160437861	160438263	2	160626794	160627066	+	-	2	14	7	(ac)	2	+	160437964	0	null	CACTTTT	2	+	160626948	0	98	188984	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
115	2	160636366	160636706	2	160638532	160638859	+	-	2	7	7	(ac)	2	+	160636466	0	null	TTTCACTTTT	2	+	160638729	0	93	2263	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
118	2	186687196	186687561	2	186712627	186712946	+	-	2	14	7	(ac)	2	+	186687300	186687302	TA	null	2	+	186712835	186712837	100	25535	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
119	2	187356527	187356963	2	187403833	187404241	-	+	4	0	7	(-c)	2	-	187356863	187356861	CA	null	2	-	187404020	187404018	100	47157	0	1	c	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	c	yellow	LATE
123	2	226884076	226884383	2	226948128	226948350	-	+	4	20	13	(ac)	2	-	226884293	226884292	C	null	2	-	226948220	226948219	99	63927	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
132	3	12848355	12848670	3	179143767	179144032	-	+	4	35	34	(ac)	3	-	12848577	12848576	G	null	3	-	179143863	179143862	99	166295286	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
145	3	122860237	122860571	3	122862794	122863165	+	-	2	0	4	(-c)	3	+	122860365	122860368	CTC	null	3	+	122863031	122863034	99	2666	0	1	c	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	c	yellow	LATE
148	3	156874963	156875228	3	159438508	159438802	-	+	4	49	19	(ac)	3	-	156875129	0	null	C	3	-	159438600	0	97	2563471	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
150	3	159409531	159409788	3	179129177	179129411	+	-	2	53	21	(ac)	3	+	159409624	0	null	null	3	+	179129318	0	98	19719694	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
151	3	159431113	159431413	3	159955323	159955620	-	-	8	42	25	(ac)	3	-	159431317	159431316	T	null	3	+	159955521	159955522	97	524204	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
157	3	179096633	179096948	3	179147544	179147904	+	+	1	41	9	(ac)	3	+	179096741	0	null	null	3	-	179147636	0	97	50895	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
158	3	179147058	179147410	3	180661975	180662244	-	-	8	27	18	(ac)	3	-	179147319	179147316	CAC	null	3	+	180662147	180662150	96	1514828	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
159	3	195986835	195987438	3	196116503	196116973	+	-	2	6	0	(a-)	3	+	195986978	0	null	TTTATTAGTTTAGTAGTTTAGTAGTTTTTTTTTTTTTGTATTTTAGTAGTATTGTAGTTTTAAT	3	+	196116810	0	99	129832	1	0	a	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	a	blue	LATE
160	4	931255	931555	4	1135972	1136278	-	+	4	26	18	(ac)	4	-	931459	0	null	AATAAATAAATAATAAATAATAAT	4	-	1136076	0	100	204617	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
165	4	6510223	6510657	7	85956576	85957128	+	+	32	4	6	(ac)	4	+	6510293	0	null	TGACGGAGTGAGACTCCATCTCAAAAAAAAGA	7	-	85956848	0	97	NA	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
169	4	89967396	89967850	4	90004592	90005009	+	-	2	6	0	(a-)	4	+	89967579	89967583	AACA	null	4	+	90004885	90004889	99	37306	1	0	a	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	a	blue	LATE
170	4	91523769	91524305	4	91562734	91563223	+	-	2	5	0	(a-)	4	+	91523984	91523986	CA	null	4	+	91563120	91563122	99	39136	1	0	a	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	a	blue	LATE
171	4	91746740	91747020	4	91753532	91753826	+	-	2	28	13	(ac)	4	+	91746835	91746836	T	null	4	+	91753732	91753733	99	6897	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
177	4	123644120	123644537	4	123701482	123701797	-	+	4	0	7	(-c)	4	-	123644411	123644409	AG	null	4	-	123701588	123701586	100	57177	0	1	c	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	c	yellow	LATE
180	4	142161443	142161764	4	142407015	142407359	-	+	4	18	0	(a-)	4	-	142161653	0	null	ACTA	4	-	142407111	0	96	245458	1	0	a	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	a	blue	LATE
181	4	153786031	153786423	4	153872009	153872361	+	-	2	0	9	(-c)	4	+	153786147	153786150	GTA	null	4	+	153872268	153872271	98	86121	0	1	c	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	c	yellow	LATE
182	4	155605296	155605532	4	155672985	155673262	+	-	2	42	57	(ac)	4	+	155605387	0	null	T	4	+	155673172	0	97	67785	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
187	5	59351057	59351421	5	59490538	59490924	+	-	2	13	0	(a-)	5	+	59351167	0	null	GAAAGAAAG	5	+	59490819	0	100	139652	1	0	a	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	a	blue	LATE
188	5	59457632	59458035	5	59608273	59608695	+	-	2	6	0	(a-)	5	+	59457740	59457742	GA	null	5	+	59608522	59608524	100	150782	1	0	a	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	a	blue	LATE
189	5	66188153	66188509	5	66196104	66196454	-	+	4	21	6	(ac)	5	-	66188405	0	null	TAATTTCAAAGATAAGC	5	-	66196198	0	68	7793	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
190	5	71652260	71652631	8	41132147	41132466	-	+	32	21	10	(ac)	5	-	71652537	71652534	GCA	null	8	-	41132246	41132243	99	NA	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
191	5	71836001	71836434	19	1030204	1030671	+	-	32	14	6	(ac)	5	+	71836255	71836283	CCACTGCACTCCAGCCTGGGCGACAGAG	null	19	+	1030583	1030611	98	NA	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
198	5	116758379	116758771	10	107143053	107143622	-	+	32	4	2	(ac)	5	-	116758570	0	null	GGGGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTAC	10	-	107143091	0	100	NA	0	0	na	no.cn.change	no.cn.change	MEDIUM	na	grey	NA
201	5	180147702	180148051	5	180149497	180149879	-	-	8	0	15	(-c)	5	-	180147943	180147941	TT	null	5	+	180149758	180149760	100	1815	0	1	c	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	c	yellow	LATE
202	5	180161080	180161392	6	44121771	44122096	+	-	32	1	13	(ac)	5	+	180161177	0	null	GAGCTACATTGAGCTCAAGCTACTGGCTACATT	6	+	44121975	0	98	NA	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
205	6	54108555	54108920	22	43077205	43077613	+	-	32	2	8	(ac)	6	+	54108680	0	null	AAAAATAAGCCAAA	22	+	43077503	0	92	NA	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
208	6	70903279	70903529	6	70967698	70967982	-	-	8	16	31	(ac)	6	-	70903430	0	null	T	6	+	70967888	0	99	64458	0	0	na	no.cn.change	no.cn.change	MEDIUM	na	grey	NA
209	6	70965125	70965372	8	116491535	116491874	+	-	32	32	20	(ac)	6	+	70965219	0	null	AG	8	+	116491777	0	95	NA	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
213	6	78239746	78239983	6	112502416	112502713	+	+	1	44	28	(ac)	6	+	78239835	78239836	C	null	6	-	112502518	112502517	98	34262683	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
214	6	85702639	85702930	6	87859554	87859860	-	+	4	0	14	(-c)	6	-	85702829	0	null	null	6	-	87859646	0	100	2156817	0	1	c	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	c	yellow	LATE
215	6	85715902	85716219	6	85837103	85837476	-	+	4	0	7	(-c)	6	-	85716105	85716102	GCA	null	6	-	85837214	85837211	99	121109	0	1	c	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	c	yellow	LATE
216	6	101815423	101815827	6	101949132	101949544	+	-	2	0	5	(-c)	6	+	101815608	101815611	ATG	null	6	+	101949426	101949429	98	133818	0	1	c	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	c	yellow	LATE
218	6	109946936	109947243	6	134467625	134467919	-	-	8	36	26	(ac)	6	-	109947149	109947148	T	null	6	+	134467823	134467824	68	24520674	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
219	6	109973613	109973921	6	112580310	112580617	+	+	1	47	20	(ac)	6	+	109973703	109973705	CT	null	6	-	112580401	112580399	99	2606698	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
220	6	112387197	112387455	6	113185475	113185726	-	-	8	50	19	(ac)	6	-	112387366	112387363	TTT	null	6	+	113185629	113185632	100	798263	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
221	6	112541327	112541627	6	114085259	114085504	-	+	4	42	28	(ac)	6	-	112541532	112541530	TT	null	6	-	114085355	114085353	98	1543823	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
222	6	113339206	113339512	6	113349551	113349865	-	+	4	50	17	(ac)	6	-	113339412	113339411	G	null	6	-	113349646	113349645	100	10234	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
224	6	118477086	118477352	17	57554975	57555242	-	+	32	43	30	(ac)	6	-	118477256	118477254	TA	null	17	-	57555067	57555065	100	NA	0	0	na	no.cn.change	no.cn.change	MEDIUM	na	grey	NA
229	6	138833501	138833785	6	138982418	138982741	+	-	2	25	13	(ac)	6	+	138833589	138833591	AA	null	6	+	138982640	138982642	99	149051	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
240	6	149911987	149912242	6	158271826	158272044	+	-	2	76	47	(ac)	6	+	149912078	149912079	A	null	6	+	158271951	158271952	98	8359873	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
243	6	158305461	158305736	6	158314737	158315035	+	+	1	16	10	(ac)	6	+	158305550	158305552	CT	null	6	-	158314835	158314833	98	9285	0	0	na	no.cn.change	no.cn.change	MEDIUM	na	grey	NA
244	6	167624686	167625097	6	167629988	167630339	+	-	2	10	0	(a-)	6	+	167624803	167624805	GT	null	6	+	167630236	167630238	74	5433	1	0	a	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	a	blue	LATE
245	7	755251	755703	7	820941	821387	-	+	4	6	0	(a-)	7	-	755515	755512	CGG	null	7	-	821062	821059	63	65547	1	0	a	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	a	blue	LATE
246	7	1939448	1939827	7	2231623	2231944	+	-	2	0	10	(-c)	7	+	1939553	1939556	GGC	null	7	+	2231824	2231827	100	292271	0	1	c	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	c	yellow	LATE
253	7	70270066	70270376	7	71435681	71435954	-	+	4	39	22	(ac)	7	-	70270277	70270276	A	null	7	-	71435772	71435771	98	1165495	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
258	7	122468661	122468978	7	122483558	122483844	-	+	4	20	11	(ac)	7	-	122468862	122468860	AG	null	7	-	122483656	122483654	99	14794	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
262	7	135905704	135906012	7	135923112	135923456	-	+	4	25	0	(a-)	7	-	135905904	135905901	TAA	null	7	-	135923202	135923199	100	17298	1	0	a	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	a	blue	LATE
263	7	135912470	135912835	7	136035028	136035418	-	+	4	0	9	(-c)	7	-	135912714	135912711	ACA	null	7	-	136035153	136035150	93	122439	0	1	c	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	c	yellow	LATE
266	8	3358602	3358851	8	3449845	3450199	+	-	2	0	10	(-c)	8	+	3358701	3358704	AAA	null	8	+	3450090	3450093	98	91389	0	1	c	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	c	yellow	LATE
267	8	3367486	3367950	8	3715948	3716299	+	-	2	7	0	(a-)	8	+	3367585	0	null	TGT	8	+	3716183	0	93	348598	1	0	a	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	a	blue	LATE
268	8	3387468	3387771	8	3656110	3656454	+	-	2	16	0	(a-)	8	+	3387584	0	null	AA	8	+	3656359	0	98	268775	1	0	a	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	a	blue	LATE
269	8	3806464	3806810	8	3915325	3915664	+	-	2	16	2	(ac)	8	+	3806560	0	null	TTTCTAAT	8	+	3915541	0	99	108981	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
271	8	4007892	4008299	8	4061026	4061359	+	-	2	11	4	(ac)	8	+	4008018	4008019	A	null	8	+	4061232	4061233	99	53214	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
272	8	4361672	4361976	8	4625897	4626176	+	-	2	29	3	(ac)	8	+	4361758	4361762	AAAT	null	8	+	4626080	4626084	98	264322	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
273	8	4413380	4413693	8	4812688	4812934	+	-	2	37	25	(ac)	8	+	4413468	4413471	AGG	null	8	+	4812838	4812841	90	399370	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
274	8	4433384	4433817	8	4655841	4656238	+	-	2	0	4	(-c)	8	+	4433487	4433489	CA	null	8	+	4656059	4656061	94	222572	0	1	c	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	c	yellow	LATE
275	8	4496363	4496655	8	4787969	4788271	+	-	2	15	0	(a-)	8	+	4496463	4496467	GAAA	null	8	+	4788173	4788177	97	291710	1	0	a	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	a	blue	LATE
281	8	41049255	41049586	19	1300526	1300853	-	+	32	9	7	(ac)	8	-	41049490	41049488	GG	null	19	-	1300628	1300626	75	NA	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
293	8	116480175	116480622	11	27518916	27519374	+	+	32	0	8	(-c)	8	+	116480431	116480435	TCAT	null	11	-	27519022	27519018	99	NA	0	1	c	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	c	yellow	LATE
294	8	116500148	116500431	8	116522652	116522921	+	-	2	0	15	(-c)	8	+	116500248	116500251	AGA	null	8	+	116522819	116522822	100	22571	0	1	c	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	c	yellow	LATE
295	8	116502611	116502912	8	116553130	116553431	+	-	2	22	22	(ac)	8	+	116502696	0	null	TTAACTTGTTTTAACTTGCAAGTTCAC	8	+	116553337	0	100	50641	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
296	8	116509034	116509391	11	27518443	27518889	-	-	32	0	11	(-c)	8	-	116509196	116509194	TG	null	11	+	27518795	27518797	100	NA	0	1	c	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	c	yellow	LATE
297	8	116865509	116865803	8	117017988	117018335	-	-	8	14	7	(ac)	8	-	116865690	0	null	AGTCAAAGATATTACTTATATTTACATATAAAGTAAATGGCCT	8	+	117018237	0	99	152547	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
298	8	117017924	117018242	8	117026507	117026781	+	+	1	12	19	(ac)	8	+	117018030	0	null	ATATTACATTATATTAG	8	-	117026629	0	100	8599	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
299	8	117021945	117022341	8	117026562	117026953	-	+	4	13	7	(ac)	8	-	117022244	0	null	ATAAAAACACAGAATAAAAACTGAGATAAAAACACAGAATAAAAACACAGATAATGTAATATCTGTGACTAAT	8	-	117026663	0	100	4419	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
306	8	128616416	128616649	8	128828107	128828316	-	+	4	93	43	(ac)	8	-	128616576	128616567	GCTGGTCTC	null	8	-	128828176	128828167	97	211600	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
311	8	144832661	144833039	8	144899868	144900147	-	+	4	20	0	(a-)	8	-	144832945	144832943	TG	null	8	-	144899977	144899975	100	67032	1	0	a	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	a	blue	LATE
312	8	144878154	144878565	8	144914584	144914958	+	-	2	0	4	(-c)	8	+	144878284	144878286	AG	null	8	+	144914855	144914857	99	36571	0	1	c	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	c	yellow	LATE
314	8	146273317	146273624	8	146280062	146280358	+	+	1	22	0	(a-)	8	+	146273409	146273410	T	null	8	-	146280164	146280163	99	6755	1	0	a	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	a	blue	LATE
318	9	13269485	13269868	9	13416360	13416802	-	+	4	7	0	(a-)	9	-	13269709	0	null	GAA	9	-	13416452	0	75	146743	1	0	a	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	a	blue	LATE
320	9	14327488	14327758	9	14377707	14377982	+	-	2	21	0	(a-)	9	+	14327579	14327580	A	null	9	+	14377887	14377888	99	50308	1	0	a	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	a	blue	LATE
323	9	21947245	21947527	9	22135358	22135736	-	-	8	0	4	(-c)	9	-	21947420	0	null	CACTTTACACTTTACACTTTAAAGTGTA	9	+	22135641	0	83	188221	0	1	c	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	c	yellow	LATE
325	9	34652418	34652757	9	34902038	34902333	-	+	4	0	9	(-c)	9	-	34652656	34652654	TC	null	9	-	34902134	34902132	99	249478	0	1	c	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	c	yellow	LATE
327	10	276243	276507	10	284141	284409	-	-	8	28	27	(ac)	10	-	276407	276369	GAGTCTCACTCTGTCGCCCAGGCTGGAGTGCAGTGGTG	null	10	+	284321	284359	99	7914	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
328	10	285206	285486	10	293234	293515	+	+	1	48	26	(ac)	10	+	285297	285298	C	null	10	-	293330	293329	100	8033	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
330	10	10981554	10981924	10	10986043	10986399	+	-	2	16	9	(ac)	10	+	10981655	0	null	null	10	+	10986281	0	84	4626	0	0	na	no.cn.change	no.cn.change	MEDIUM	na	grey	NA
331	10	13331641	13331940	12	11659139	11659411	-	-	32	12	11	(ac)	10	-	13331850	13331847	TCT	null	12	+	11659310	11659313	94	NA	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
332	10	13484016	13484321	12	11851253	11851609	+	+	32	19	7	(ac)	10	+	13484114	13484116	CT	null	12	-	11851352	11851350	99	NA	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
341	10	76041820	76042061	10	92271094	92271351	+	-	2	55	27	(ac)	10	+	76041914	76041917	GCA	null	10	+	92271253	92271256	100	16229339	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
342	10	76965794	76966066	10	76971072	76971421	+	-	2	0	15	(-c)	10	+	76965897	76965898	C	null	10	+	76971325	76971326	97	5428	0	1	c	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	c	yellow	LATE
343	10	87158113	87158493	12	157065	157475	+	+	32	26	10	(ac)	10	+	87158225	87158227	AA	null	12	-	157210	157208	92	NA	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
344	10	87177499	87177754	12	159497	159776	-	+	32	27	12	(ac)	10	-	87177656	87177650	TCATTT	null	12	-	159590	159584	98	NA	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
345	10	88809793	88810087	10	88812090	88812366	+	+	1	35	23	(ac)	10	+	88809885	88809887	CC	null	10	-	88812181	88812179	99	2296	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
347	10	94961178	94961467	10	94992056	94992355	+	-	2	52	25	(ac)	10	+	94961274	94961277	ACA	null	10	+	94992252	94992255	100	30978	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
348	10	99428046	99428297	10	99462637	99462921	+	-	2	41	20	(ac)	10	+	99428136	99428137	C	null	10	+	99462830	99462831	99	34694	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
352	10	112614650	112614925	10	112616867	112617140	+	-	2	48	25	(ac)	10	+	112614743	0	null	TA	10	+	112617046	0	98	2303	0	0	na	no.cn.change	no.cn.change	MEDIUM	na	grey	NA
353	10	122748637	122748940	10	123385913	123386162	-	+	4	23	15	(ac)	10	-	122748846	122748843	GTG	null	10	-	123386009	123386006	98	637163	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
354	10	123090368	123090638	10	123213436	123213694	-	+	4	43	21	(ac)	10	-	123090546	123090542	TGGG	null	10	-	123213525	123213521	98	122979	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
359	11	22840217	22840595	11	22869602	22870028	+	-	2	23	0	(a-)	11	+	22840311	0	null	null	11	+	22869859	0	99	29548	1	0	a	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	a	blue	LATE
362	11	57337817	57338135	11	57364323	57364613	+	-	2	39	12	(ac)	11	+	57337908	0	null	TT	11	+	57364517	0	100	26609	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
363	11	63940505	63941077	X	129025576	129026108	+	+	32	4	1	(ac)	11	+	63940728	0	null	null	X	-	129025787	0	97	NA	0	0	na	no.cn.change	no.cn.change	MEDIUM	na	grey	NA
367	11	75376794	75377172	11	75379421	75379753	+	-	2	29	8	(ac)	11	+	75376892	0	null	GAGTAGAAGGGTGAGACGAGCGGCGTAGGGTGAGA	11	+	75379661	0	100	2769	0	0	na	no.cn.change	no.cn.change	MEDIUM	na	grey	NA
376	11	125075009	125075300	11	125076660	125076979	+	-	2	53	9	(ac)	11	+	125075100	125075102	TG	null	11	+	125076881	125076883	99	1781	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
377	11	128527096	128527468	11	128577645	128577931	-	+	4	1	7	(ac)	11	-	128527359	128527356	TGT	null	11	-	128577778	128577775	98	50419	0	1	c	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	c	yellow	LATE
381	12	6650795	6651046	12	6818324	6818601	-	+	4	0	8	(-c)	12	-	6650939	6650937	GC	null	12	-	6818428	6818426	89	167489	0	1	c	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	c	yellow	LATE
397	12	52225578	52225869	12	52357091	52357458	-	+	4	0	13	(-c)	12	-	52225779	52225773	GGTGGC	null	12	-	52357183	52357177	100	131404	0	1	c	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	c	yellow	LATE
403	12	100362268	100362663	12	100482014	100482369	+	-	2	12	0	(a-)	12	+	100362364	0	null	null	12	+	100482232	0	97	119868	1	0	a	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	a	blue	LATE
411	14	102900291	102900614	14	103150153	103150497	-	+	4	0	10	(-c)	14	-	102900488	102900486	AG	null	14	-	103150249	103150247	98	249761	0	1	c	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	c	yellow	LATE
417	15	50119888	50120300	15	50130187	50130593	+	-	2	14	0	(a-)	15	+	50119987	0	null	GCAGACAATTTAGCTAAATTTAGCTAAATTT	15	+	50130439	0	100	10452	1	0	a	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	a	blue	LATE
418	15	50133338	50133799	15	50238365	50238739	-	+	4	13	0	(a-)	15	-	50133614	50133610	TCTT	null	15	-	50238464	50238460	82	104850	1	0	a	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	a	blue	LATE
424	16	1921027	1921565	19	51249374	51249928	+	+	32	4	2	(ac)	16	+	1921322	1921365	CCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGC	null	19	-	51249479	51249436	91	NA	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
427	16	7322352	7322664	16	7324106	7324480	-	-	8	21	0	(a-)	16	-	7322563	0	null	AAGTGATAAAGTG	16	+	7324380	0	64	1817	1	0	a	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	a	blue	LATE
433	16	54806095	54806393	16	54813560	54813855	-	-	8	59	31	(ac)	16	-	54806294	54806293	C	null	16	+	54813749	54813750	90	7455	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
434	16	54815476	54815740	16	54818646	54818893	+	+	1	62	28	(ac)	16	+	54815564	54815568	ACTC	null	16	-	54818734	54818730	94	3170	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
435	16	54869074	54869374	18	77758199	77758521	+	+	32	46	16	(ac)	16	+	54869171	0	null	AGGCAGC	18	-	77758299	0	99	NA	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
436	16	57124657	57125010	16	57147755	57148078	+	-	2	19	0	(a-)	16	+	57124747	0	null	A	16	+	57147983	0	99	23236	1	0	a	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	a	blue	LATE
438	16	67241983	67242308	16	67252691	67253001	+	-	2	25	24	(ac)	16	+	67242071	67242073	CA	null	16	+	67252902	67252904	98	10831	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
440	16	86498762	86499153	16	86500297	86500653	+	-	2	19	5	(ac)	16	+	86498905	0	null	null	16	+	86500511	0	75	1606	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
441	16	86524285	86524604	16	86531062	86531433	+	-	2	14	7	(ac)	16	+	86524406	86524408	TC	null	16	+	86531336	86531338	84	6930	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
442	16	87169838	87170199	16	87408717	87409141	+	-	2	0	5	(-c)	16	+	87169999	87170020	GAGCTGAGATCACGCCACTGC	null	16	+	87409041	87409062	94	239042	0	1	c	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	c	yellow	LATE
443	16	87775839	87776350	22	40840644	40841150	-	+	32	0	5	(-c)	16	-	87776249	87776246	TGA	null	22	-	40840928	40840925	80	NA	0	1	c	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	c	yellow	LATE
444	16	87776327	87776824	22	40843246	40843708	+	+	32	0	5	(-c)	16	+	87776420	0	null	ACCCTGGCTAGGGCTTAATTCAGATGGGATGGATTCCACACCCTGATATTTTTATCAGGGGCATGGTAGTCACCCAATGGAAAGCAGCTACAGAAATGTAGTCCTTGGTCTTAGCACCCAAAAGG	22	-	40843339	0	85	NA	0	1	c	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	c	yellow	LATE
446	16	89692551	89692873	16	89754274	89754633	-	+	4	0	14	(-c)	16	-	89692748	0	null	AAATCTCT	16	-	89754371	0	98	61623	0	1	c	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	c	yellow	LATE
448	16	89749681	89749971	16	89752017	89752399	+	+	1	2	12	(ac)	16	+	89749770	89749772	GG	null	16	-	89752135	89752133	73	2365	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
449	17	16443912	16444256	17	16462036	16462349	+	-	2	20	10	(ac)	17	+	16444003	0	null	GAG	17	+	16462253	0	100	18250	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
450	17	40309188	40309453	17	40334714	40335024	-	+	4	50	24	(ac)	17	-	40309356	40309355	G	null	17	-	40334806	40334805	92	25450	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
451	17	45820495	45820849	17	45824564	45824890	-	-	8	22	10	(ac)	17	-	45820760	45820758	CA	null	17	+	45824793	45824795	98	4033	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
452	17	46170251	46170560	17	46208895	46209212	+	+	1	34	11	(ac)	17	+	46170341	46170343	GA	null	17	-	46209018	46209016	98	38677	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
453	17	47849787	47850041	17	47852915	47853211	+	-	2	36	16	(ac)	17	+	47849876	47849880	GCTG	null	17	+	47853112	47853116	99	3236	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
454	17	57445452	57445753	17	57490945	57491251	-	-	8	31	24	(ac)	17	-	57445661	57445660	C	null	17	+	57491157	57491158	99	45496	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
456	17	62501659	62501977	17	62502559	62502911	+	-	2	0	13	(-c)	17	+	62501755	0	null	null	17	+	62502805	0	70	1050	0	1	c	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	c	yellow	LATE
461	17	74119661	74119981	17	74296642	74296980	-	+	4	20	9	(ac)	17	-	74119890	74119886	GAGC	null	17	-	74296745	74296741	99	176855	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
463	17	79664719	79664985	17	79805626	79805897	-	+	4	0	18	(-c)	17	-	79664889	79664887	TA	null	17	-	79805719	79805717	99	140830	0	1	c	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	c	yellow	LATE
464	17	79695284	79695541	17	79797745	79797998	-	+	4	1	21	(ac)	17	-	79695462	79695432	GCGGTGGCTCACGCCTGTAATCCCAGCACT	null	17	-	79797838	79797808	97	102376	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
471	18	41420580	41420891	18	51176273	51176543	-	+	4	12	9	(ac)	18	-	41420802	41420799	CTT	null	18	-	51176375	51176372	100	9755573	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
472	18	41518220	41518505	18	41521662	41521931	-	-	8	23	14	(ac)	18	-	41518414	41518411	ACT	null	18	+	41521837	41521840	98	3423	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
474	18	54780665	54781068	18	55068805	55069177	-	+	4	20	0	(a-)	18	-	54780975	54780974	A	null	18	-	55068947	55068946	99	287972	1	0	a	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	a	blue	LATE
475	18	60572945	60573369	X	11343178	11343747	+	+	32	1	4	(ac)	18	+	60573211	0	null	null	X	-	11343266	0	99	NA	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
478	19	1389707	1390038	19	1436925	1437260	-	+	4	12	9	(ac)	19	-	1389972	1389935	GAGATCGCACCACTGCACTCCAGCCTGGGCGACAGAG	null	19	-	1437063	1437026	93	47091	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
480	19	7209992	7210340	19	7227517	7227824	+	-	2	21	0	(a-)	19	+	7210083	7210086	AGT	null	19	+	7227722	7227725	99	17639	1	0	a	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	a	blue	LATE
481	19	27810227	27810590	19	40718601	40718948	+	-	2	1	18	(ac)	19	+	27810333	0	null	CACGTTCGTCCCTTCTTCTTGCCCCCGACCAGTTCTTCCTTCTT	19	+	40718834	0	99	12908501	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
482	19	28194938	28195273	19	29022860	29023223	-	+	4	23	44	(ac)	19	-	28195180	0	null	CATGTAATATAATAATAAAGATATATTATTTATTTCCTGTAAAAAATTTTATTTTTTAAAATATATTTACATGTTTTTGCCAAAAGTTTATTTTA	19	-	29022958	0	88	827778	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
483	19	28201767	28202110	19	35980192	35980558	+	-	2	30	73	(ac)	19	+	28201859	0	null	TTTAATATGTAAACTTTTATAAATTTTATAAATTTTGTAAAGGATTATTTTATTTTAAAATATTTTGTAAAATATTTTATTGCACTTATAAAAT	19	+	35980462	0	98	7778603	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
485	19	28277248	28277530	19	39405377	39405681	+	-	2	22	57	(ac)	19	+	28277342	0	null	CTACCTATTTGGGCCCCTATT	19	+	39405583	0	97	11128241	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
486	19	28928813	28929217	19	30987739	30988149	-	+	4	11	22	(ac)	19	-	28929118	0	null	GTAAAATATTAAACTTAATATTTTAATAAATAATAATAAATTTAATTATAATAAAGATTTATTATTATAATAATTTATAAATAATACATGTTTATTATAAACGAGCATATGTGTTAGGATGTTTATAAACA	19	-	30987832	0	100	2058714	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
487	19	29199793	29200080	19	40537878	40538156	-	-	8	47	91	(ac)	19	-	29199985	0	null	TAGCTGTA	19	+	40538065	0	98	11338080	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
490	19	29794223	29794526	19	30914391	30914663	-	+	4	24	42	(ac)	19	-	29794433	0	null	TTAGTTTTAAAAAAACTAAA	19	-	30914488	0	100	1120055	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
491	19	29847708	29848019	19	46381670	46382031	+	+	1	27	73	(ac)	19	+	29847801	0	null	GGCATATATTCAGTTTGAATATATATAAATTCAG	19	-	46381761	0	99	16533960	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
492	19	30036095	30036510	19	50858836	50859183	+	+	1	0	6	(-c)	19	+	30036229	0	null	TGCAAAGATGTTGAAAGAACACATGCCTGTT	19	-	50858928	0	95	20822699	0	1	c	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	c	yellow	LATE
493	19	30038189	30038638	19	30751817	30752287	-	-	8	4	10	(ac)	19	-	30038538	30038536	TC	null	19	+	30752009	30752011	98	713471	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
494	19	30101922	30102262	19	30385892	30386240	+	-	2	15	34	(ac)	19	+	30102019	0	null	GATAAATAATTATTAATAATTAATTTATTTAATTATTTAATTATTTATTATTTTAGCCAGGATGGTC	19	+	30386145	0	97	284126	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
496	19	30255103	30255456	19	46436860	46437223	+	-	2	6	20	(ac)	19	+	30255200	0	null	TTAAATAATTAAATAAATTTATTTAATAATTATTTAAATAATTTATATAAATTATTAAATTTATTTAAATTTAAATTTACTTTCACTCAC	19	+	46437125	0	100	16181925	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
498	19	30320833	30321069	19	30323735	30324035	+	-	2	2	12	(ac)	19	+	30320930	30320931	G	null	19	+	30323935	30323936	95	3005	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
499	19	30331470	30331747	19	45120356	45120655	-	-	8	15	49	(ac)	19	-	30331652	30331650	AG	null	19	+	45120561	45120563	99	14788909	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
501	19	30388487	30388775	19	30489409	30489677	+	+	1	26	76	(ac)	19	+	30388580	0	null	C	19	-	30489502	0	100	100922	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
502	19	30394546	30394826	19	41063562	41063795	+	+	1	42	97	(ac)	19	+	30394641	0	null	CC	19	-	41063659	0	99	10669018	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
503	19	30394576	30395014	19	30433363	30433769	-	-	8	15	25	(ac)	19	-	30394922	0	null	GGCCCTGGTGTGGAGAATTAATAAATAATTAAAATTTATTTTTTAATAAATTAATTATTAATTAAATATTATTTAAATAATAAATAAATAATTATTATTTTAAATAATTTATTATTTAAAAAAAAAATTAAATAATTCTCTAGGCACACAGTT	19	+	30433673	0	95	38751	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
504	19	30446156	30446463	19	46450855	46451179	+	+	1	12	41	(ac)	19	+	30446250	0	null	AATAAATAAATAATTCAAAATTATTTATAATTTTAAATAA	19	-	46450952	0	100	16004702	0	0	na	no.cn.change	no.cn.change	MEDIUM	na	grey	NA
506	19	30827826	30828155	19	45235381	45235715	+	+	1	12	39	(ac)	19	+	30827914	0	null	GCCTTTGCCTCAGAGGCTGAGGCAAGGAGAATTGCTTGGTCTCTGT	19	-	45235477	0	97	14407563	0	0	na	no.cn.change	no.cn.change	MEDIUM	na	grey	NA
507	19	30914291	30914594	19	30976308	30976580	-	+	4	26	50	(ac)	19	-	30914499	0	null	AAATTTGGTGTA	19	-	30976399	0	99	61900	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
509	19	36180426	36180742	19	40539137	40539432	+	+	1	53	66	(ac)	19	+	36180517	0	null	CTCCATCTGT	19	-	40539231	0	96	4358714	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
510	19	39538220	39538559	19	46794158	46794480	+	+	1	24	42	(ac)	19	+	39538310	0	null	CATTCAAAAAAAATACCCT	19	-	46794250	0	97	7255940	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
511	19	39742438	39742912	19	51369190	51369702	-	+	4	4	5	(ac)	19	-	39742823	0	null	TGATAAAATTATATCACACAAAATTATAAAATTTATTTATTAATAATTAAATAAAATAATAAATATTTAAAATAATAATTATTATATTTAATAATTATTTAATTATTTAATTAAATAATTAATTTAATTATTTTAAATATTTAAATATTTAAATATTTTATATATTTTAAATATATAATAATTATTTTTTAATAATTATAAATAATTATTTATAATTTAAATAATTAAAAAATTATTTAAAGTAAG	19	-	51369282	0	96	11626459	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
512	19	39774198	39774501	19	45092870	45093156	+	-	2	21	52	(ac)	19	+	39774295	0	null	TTTTTATAAATAT	19	+	45093061	0	100	5318766	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
514	19	40678239	40678563	19	40693616	40693912	-	+	4	11	12	(ac)	19	-	40678458	40678452	AAAAAA	null	19	-	40693721	40693715	100	15263	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
515	19	45188471	45188735	19	46676308	46676600	-	+	4	27	93	(ac)	19	-	45188642	0	null	AGTTGAATTTATTTTTT	19	-	46676399	0	97	1487757	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
516	19	45254814	45255103	19	50728240	50728580	+	+	1	2	10	(ac)	19	+	45254904	45254920	CTGGAGTGCAGTGGCA	null	19	-	50728334	50728318	96	5473430	0	0	na	no.cn.change	no.cn.change	MEDIUM	na	grey	NA
517	19	45269681	45270063	19	45510838	45511162	+	+	1	0	11	(-c)	19	+	45269771	0	null	TAGCTGGGACTACAGGTATCT	19	-	45510940	0	99	241169	0	1	c	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	c	yellow	LATE
518	19	45378799	45379125	19	46547734	46548040	+	-	2	0	10	(-c)	19	+	45378921	0	null	CA	19	+	46547945	0	100	1169024	0	1	c	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	c	yellow	LATE
519	19	45385931	45386402	19	45386283	45386751	-	-	8	1	4	(ac)	19	-	45386313	45386298	TAATCCCAGCACTTT	null	19	+	45386514	45386529	89	201	0	1	c	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	c	yellow	LATE
521	19	45572259	45572640	20	15588709	15588998	+	-	32	0	15	(-c)	19	+	45572385	45572386	A	null	20	+	15588876	15588877	98	NA	0	1	c	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	c	yellow	LATE
522	19	45610530	45610966	19	51050874	51051322	+	+	1	8	0	(a-)	19	+	45610662	45610664	CA	null	19	-	51051003	51051001	89	5440341	1	0	a	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	a	blue	LATE
523	19	46318363	46318618	19	46320236	46320511	-	-	8	42	139	(ac)	19	-	46318525	46318524	C	null	19	+	46320418	46320419	99	1893	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
526	19	46381130	46381346	19	46392232	46392545	+	-	2	14	50	(ac)	19	+	46381215	46381223	TGTCCATT	null	19	+	46392452	46392460	99	11237	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
527	19	46397293	46397686	19	50854260	50854592	+	-	2	6	2	(ac)	19	+	46397378	0	null	ATTTATTTTTTATTTATTTATTT	19	+	50854491	0	97	4457113	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
528	19	50697335	50697606	19	50895630	50895903	-	+	4	9	66	(ac)	19	-	50697511	50697509	GA	null	19	-	50895725	50895723	92	198214	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
530	19	55210352	55210641	19	55483866	55484206	-	+	4	3	11	(ac)	19	-	55210551	55210547	GGCC	null	19	-	55483963	55483959	98	273412	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
531	20	3986887	3987224	20	4061247	4061569	-	+	4	24	7	(ac)	20	-	3987115	0	null	null	20	-	4061345	0	97	74230	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
532	20	6060437	6060747	20	6399477	6399869	-	-	8	12	0	(a-)	20	-	6060648	0	null	GTAA	20	+	6399757	0	100	339109	1	0	a	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	a	blue	LATE
533	20	6399668	6399961	20	6433839	6434164	+	+	1	19	0	(a-)	20	+	6399759	6399761	AA	null	20	-	6433937	6433935	100	34178	1	0	a	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	a	blue	LATE
537	20	14789002	14789462	20	14910331	14910766	+	-	2	7	0	(a-)	20	+	14789142	0	null	TTTTTGTACT	20	+	14910645	0	80	121503	1	0	a	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	a	blue	LATE
542	20	14964432	14964759	20	15253521	15253877	+	+	1	15	0	(a-)	20	+	14964531	0	null	ATGGAGGAGGCTCACAAGGTCCC	20	-	15253611	0	100	289080	1	0	a	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	a	blue	LATE
543	20	15015763	15016073	20	15107232	15107555	+	-	2	15	0	(a-)	20	+	15015869	15015872	TGT	null	20	+	15107454	15107457	98	91585	1	0	a	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	a	blue	LATE
544	20	15028673	15028986	20	15153147	15153570	+	-	2	6	0	(a-)	20	+	15028835	0	null	AC	20	+	15153473	0	98	124638	1	0	a	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	a	blue	LATE
546	20	15151860	15152141	20	16261719	16262062	-	+	4	31	19	(ac)	20	-	15152039	15152037	AC	null	20	-	16261817	16261815	78	1109778	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
547	20	15238304	15238760	20	15253749	15254164	-	-	8	9	0	(a-)	20	-	15238590	0	null	TAGCTC	20	+	15254017	0	100	15427	1	0	a	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	a	blue	LATE
549	20	15569407	15569738	20	15571977	15572331	+	-	2	27	16	(ac)	20	+	15569499	15569503	CATT	null	20	+	15572180	15572184	62	2681	0	0	na	no.cn.change	no.cn.change	MEDIUM	na	grey	NA
551	20	45879208	45879498	20	46035189	46035414	-	+	4	15	0	(a-)	20	-	45879396	45879394	CT	null	20	-	46035280	46035278	98	155884	1	0	a	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	a	blue	LATE
552	20	47541341	47541763	20	47690373	47690748	+	-	2	9	0	(a-)	20	+	47541439	47541441	GC	null	20	+	47690646	47690648	94	149207	1	0	a	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	a	blue	LATE
556	20	56563294	56563617	20	56719433	56719755	-	+	4	22	0	(a-)	20	-	56563512	56563509	CAT	null	20	-	56719550	56719547	99	156038	1	0	a	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	a	blue	LATE
557	20	62657378	62657780	20	62887994	62888358	-	+	4	12	0	(a-)	20	-	62657641	62657637	TGAT	null	20	-	62888127	62888123	100	230486	1	0	a	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	a	blue	LATE
558	20	62679201	62679554	20	62695956	62696322	+	-	2	25	0	(a-)	20	+	62679298	0	null	null	20	+	62696200	0	98	16902	1	0	a	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	a	blue	LATE
560	21	36173111	36173458	21	36214596	36214955	+	-	2	0	10	(-c)	21	+	36173261	36173264	AAA	null	21	+	36214859	36214862	98	41598	0	1	c	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	c	yellow	LATE
561	21	36174884	36175242	21	36536172	36536586	+	-	2	9	0	(a-)	21	+	36175025	0	null	ACAT	21	+	36536491	0	100	361466	1	0	a	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	a	blue	LATE
562	21	36238951	36239324	21	36258730	36259079	-	+	4	18	0	(a-)	21	-	36239232	36239231	G	null	21	-	36258828	36258827	100	19596	1	0	a	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	a	blue	LATE
565	21	38616284	38616567	21	39100716	39101071	-	+	4	0	14	(-c)	21	-	38616461	38616457	CAGT	null	21	-	39100836	39100832	100	484375	0	1	c	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	c	yellow	LATE
567	22	33823973	33824338	22	33861339	33861662	+	-	2	18	0	(a-)	22	+	33824063	33824067	AATA	null	22	+	33861546	33861550	99	37483	1	0	a	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	a	blue	LATE
568	22	35806270	35806552	22	41489875	41490208	-	-	8	0	24	(-c)	22	-	35806459	0	null	GTAACTTGGAGAAAGAATATGCTTAACACAGTTTTTTAACTCTTCACTTA	22	+	41490121	0	99	5683662	0	1	c	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	c	yellow	LATE
570	22	43068720	43069060	22	48185097	48185414	-	-	8	0	11	(-c)	22	-	43068965	43068964	C	null	22	+	48185286	48185287	99	5116321	0	1	c	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	c	yellow	LATE
571	22	43125717	43126141	22	44063284	44063731	+	+	1	0	9	(-c)	22	+	43125826	0	null	TTTTCACGGATGATTGCTGCCTTCTGGCTTGGGGCTGGATGCCCTTGGATGTACCCACCTTATTTAGACATCACTGGCA	22	-	44063400	0	94	937574	0	1	c	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	c	yellow	LATE
573	22	45810804	45811120	22	47209168	47209492	+	-	2	0	12	(-c)	22	+	45810920	0	null	ACACACAGGGT	22	+	47209394	0	95	1398474	0	1	c	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	c	yellow	LATE
575	22	47502842	47503187	22	49229319	49229703	+	-	2	0	20	(-c)	22	+	47502937	0	null	CATTCTACCCTGGGAAAACGGAAAAGCCAATAAAAAGTTAAAGTAAAAATAAGATTTCTCCCTCTCCAGAGAAGAAAAAATTAAGAATATT	22	+	49229610	0	99	1726673	0	1	c	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	c	yellow	LATE
576	22	50121335	50121728	22	50126206	50126633	+	+	1	0	13	(-c)	22	+	50121469	50121471	GC	null	22	-	50126346	50126344	83	4877	0	1	c	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	c	yellow	LATE
577	22	50867993	50868392	22	51150993	51151323	+	+	1	0	11	(-c)	22	+	50868136	50868137	C	null	22	-	51151096	51151095	99	282960	0	1	c	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	c	yellow	LATE
581	X	46405330	46405639	X	46415234	46415582	+	-	2	15	8	(ac)	X	+	46405427	0	null	CCTTGAACTGGA	X	+	46415457	0	65	10030	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
582	X	48342448	48342771	X	48375660	48375957	+	-	2	27	25	(ac)	X	+	48342552	48342555	GTT	null	X	+	48375856	48375859	97	33304	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
583	X	71530887	71531136	X	71829836	71830134	+	-	2	33	32	(ac)	X	+	71530976	71530978	TA	null	X	+	71830039	71830041	99	299063	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
594	X	152808013	152808367	X	152957680	152958012	-	+	4	15	14	(ac)	X	-	152808222	152808219	GGA	null	X	-	152957773	152957770	95	149551	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY