id	chrl	l5	l3	chrh	h5	h3	stl	sth	paired.Flag	PD9771a	PD9771c	PD9771d	PD9771e	brass1.presence.summary	brass2_chr_from	brass2_strand_from	brass2_loc_from_min	brass2_loc_from_max	brass2_microhomology	brass2_nontemplated_insertion	brass2_chr_to	brass2_strand_to	brass2_loc_to_min	brass2_loc_to_max	brass2_score	distance.between.breakpoints	CN_A	CN_C	CN_D	CN_E	CN.presence.regions	cn.confirmation?	Rg Id(link to validation)	ST_val	PCR_GEL_RESULT	REGIONS_GEL_BAND	val.platform	currrent.conf.status	CONFIDENCE	consensus.regions	color	TIMING
2	1	10244071	10244442	1	10247548	10247928	-	+	4	8	1	2	6	(acde)	1	-	10244324	10244322	AT	null	1	-	10247650	10247648	69	3326	0	0	0	0	na	no cn change seen	103554043	NA	0	NA	bkpt.assoc.cn.change	unconfirmed	MEDIUM	acde	grey	NA
5	1	12051005	12051485	1	19747141	19747490	-	-	8	0	1	0	8	(-c-e)	1	-	12051383	0	null	null	1	+	19747355	0	98	7695972	1	1	0	1	ace	na	103554045	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	ace	yellow	LATE
7	1	14869821	14870160	12	40538839	40539182	+	-	32	2	3	4	12	(acde)	1	+	14869914	14869917	TGG	null	12	+	40539094	40539097	93	NA	1	1	1	1	acde	na	103587241	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
8	1	15158661	15158927	1	16421876	16422238	-	+	4	9	2	5	13	(acde)	1	-	15158839	15158833	CCTGCT	null	1	-	16421982	16421976	100	1263143	1	1	1	1	acde	na	103592310	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
9	1	17592986	17593401	1	20147439	20147787	+	-	2	5	2	3	11	(acde)	1	+	17593075	0	null	CCATTGACATGACATTGCCATT	1	+	20147652	0	97	2554577	1	1	1	1	acde	na	103592311	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
10	1	19505594	19505816	2	99735081	99735491	+	-	32	1	0	3	13	(a-de)	1	+	19505690	19505691	T	null	2	+	99735396	99735397	98	NA	1	1	1	1	acde	na	103554049	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
12	1	52743666	52744078	18	42569054	42569681	-	-	32	3	2	0	2	(ac-e)	1	-	52743864	0	null	null	18	+	42569598	0	78	NA	0	0	0	0	na	no cn change seen	103592322	NA	0	NA	bkpt.assoc.cn.change	unconfirmed	MEDIUM	ace	yellow	NA
13	1	56098458	56098803	18	59996619	59997031	+	-	32	4	0	0	8	(a--e)	1	+	56098597	56098598	G	null	18	+	59996939	59996940	100	NA	1	1	1	1	acde	na	103592320	stCE00-859105	SOMATIC_VAL	ADE	pcr.gel.electro.AndCNchange	somatic	HIGH	acde	grey	EARLY
17	1	94407661	94408074	1	94602344	94602789	-	+	4	0	0	2	7	(--de)	1	-	94407985	94407983	TC	null	1	-	94602577	94602575	99	194592	1	1	1	1	acde	na	103554052	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
18	1	105479489	105479974	18	64335355	64335832	-	+	32	5	0	1	12	(a-de)	1	-	105479708	105479707	A	null	18	-	64335462	64335461	93	NA	1	1	1	1	acde	na	103592325	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
19	1	106010477	106010882	3	89056933	89057164	-	-	32	2	1	5	13	(acde)	1	-	106010781	0	null	null	3	+	89057064	0	100	NA	1	1	1	1	acde	na	103587243	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
20	1	106018625	106019010	18	63908931	63909328	-	+	32	4	3	1	8	(acde)	1	-	106018866	0	null	null	18	-	63909037	0	85	NA	1	1	1	1	acde	na	103554055	stCE00-859104	SOMATIC_VAL	ADE	pcr.gel.electro.AndCNchange	somatic	HIGH	acde	grey	EARLY
21	1	106059659	106059980	5	126550834	126551138	+	+	32	6	6	2	23	(acde)	1	+	106059745	106059750	TTATT	null	5	-	126550949	126550944	100	NA	1	1	1	1	acde	na	103592327	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
22	1	106149297	106149619	12	65048612	65048907	+	+	32	2	1	2	5	(acde)	1	+	106149400	106149401	A	null	12	-	65048703	65048702	99	NA	0	0	0	0	na	no cn change seen	103554057	NA	0	NA	bkpt.assoc.cn.change	unconfirmed	MEDIUM	acde	grey	NA
23	1	107284792	107285096	7	54221854	54222259	+	-	32	5	1	3	7	(acde)	1	+	107284891	107284892	T	null	7	+	54222163	54222164	100	NA	1	1	1	1	acde	na	103554058	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
24	1	107451022	107451320	11	87492859	87493166	+	+	32	9	9	14	44	(acde)	1	+	107451115	0	null	null	11	-	87492950	0	95	NA	1	1	1	1	acde	na	103592329	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
25	1	109928982	109929336	15	91037424	91037720	-	+	32	2	2	4	16	(acde)	1	-	109929235	0	null	null	15	-	91037516	0	97	NA	1	1	1	1	acde	na	103587245	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
27	1	111164200	111164478	15	89756294	89756587	+	-	32	4	3	3	13	(acde)	1	+	111164299	0	null	null	15	+	89756487	0	98	NA	1	1	1	1	acde	na	103592337	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
29	1	111992900	111993237	1	116568300	116568725	-	+	4	0	0	7	0	(--d-)	1	-	111993141	111993138	ATA	null	1	-	116568403	116568400	99	4575262	0	0	1	0	d	na	103587246	stCE00-859139	SOMATIC_VAL	D	pcr.gel.electro.AndCNchange	somatic	HIGH	d	purple	LATE
31	1	113738652	113738934	1	113775408	113775829	-	-	8	0	0	10	0	(--d-)	1	-	113738823	0	null	AAGTTAAT	1	+	113775714	0	98	36891	0	0	1	0	d	na	103587248	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	d	purple	LATE
32	1	114572260	114572674	1	114967726	114968172	-	+	4	0	0	9	0	(--d-)	1	-	114572560	0	null	TTGTAAAACACTTTCACAACAACTGAATATCCACTTGAAAACAACTGAATATCCAGTTGTTTTACAATATTTTATAAAAGTCTGTTTTACAGACTTTTATACAAATATTTATACAATTAAAAACTCTCAGTTAAAT	1	-	114967839	0	98	395279	0	0	1	0	d	na	103587249	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	d	purple	LATE
34	1	115563446	115563964	1	115706506	115707111	+	-	2	0	0	4	0	(--d-)	1	+	115563597	115563598	C	null	1	+	115706982	115706983	94	143385	0	0	1	0	d	na	103587250	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	d	purple	LATE
36	1	116511244	116511773	1	116512048	116512479	-	-	8	0	0	4	0	(--d-)	1	-	116511692	0	null	TCTCTTCATAA	1	+	116512369	0	90	677	0	0	0	0	na	no cn change seen	103587251	NA	0	NA	bkpt.assoc.cn.change	unconfirmed	MEDIUM	d	purple	NA
37	1	118327927	118328215	2	211612057	211612422	-	+	32	3	3	1	8	(acde)	1	-	118328087	118328085	AA	null	2	-	211612150	211612148	100	NA	1	1	0	1	ace	na	103592339	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	ace	yellow	LATE
38	1	119307101	119307494	20	8642485	8642847	-	+	32	5	1	1	8	(acde)	1	-	119307395	119307394	T	null	20	-	8642585	8642584	92	NA	1	1	1	1	acde	na	103554063	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
40	1	119608940	119609253	X	71129531	71129848	+	-	32	3	4	1	16	(acde)	1	+	119609032	119609033	A	null	X	+	71129743	71129744	97	NA	1	1	1	1	acde	na	103592340	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
43	1	146808175	146808459	9	32545192	32545499	+	+	32	4	4	0	12	(ac-e)	1	+	146808274	0	null	null	9	-	32545285	0	98	NA	1	1	0	1	ace	na	103554065	stCE00-859119	SOMATIC_VAL	E	pcr.gel.electro.AndCNchange	somatic	HIGH	ace	yellow	LATE
45	1	155063410	155063862	1	155298674	155299056	+	+	1	1	0	0	13	(a--e)	1	+	155063502	0	null	GTCTATCTCCTTTATTCAACTTTTTTTCTCTCTTTGTACAC	1	-	155298795	0	99	235293	0	0	0	1	e	na	103554066	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	e	red	LATE
47	1	155263114	155263587	19	14358397	14358862	+	-	32	8	1	0	0	(ac--)	1	+	155263212	0	null	ATTCTGAG	19	+	14358742	0	80	NA	1	1	0	0	ac	na	103592342	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	ac	blue	LATE
48	1	155296669	155297094	1	192716979	192717361	-	-	8	3	2	0	6	(ac-e)	1	-	155296994	0	null	TCC	1	+	192717251	0	100	37420257	1	1	0	1	ace	na	103554067	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	ace	yellow	LATE
49	1	158362729	158363070	12	65163534	65163865	-	+	32	15	10	12	58	(acde)	1	-	158362971	0	null	null	12	-	65163626	0	92	NA	1	1	1	1	acde	na	103592344	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
52	1	161152800	161153277	7	2084893	2085219	+	+	32	0	0	2	11	(--de)	1	+	161152896	161152898	CC	null	7	-	2085015	2085013	98	NA	0	0	0	1	e	na	103554069	stCE00-859182	SOMATIC_VAL	E	pcr.gel.electro.AndCNchange	somatic	HIGH	e	red	LATE
53	1	161563257	161563545	5	108592689	108593014	+	+	32	5	9	4	24	(acde)	1	+	161563355	161563357	GA	null	5	-	108592778	108592776	93	NA	1	1	1	1	acde	na	103592346	stCE00-859118	SOMATIC_VAL	ADE	pcr.gel.electro.AndCNchange	somatic	HIGH	acde	grey	EARLY
55	1	166804639	166804945	1	220033280	220033604	-	-	8	4	2	8	24	(acde)	1	-	166804846	166804845	G	null	1	+	220033507	220033508	98	53228661	1	1	1	1	acde	na	103592348	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
56	1	167439564	167439908	1	167442757	167443045	+	+	1	7	4	5	30	(acde)	1	+	167439651	167439653	GA	null	1	-	167442848	167442846	98	3197	0	0	0	0	na	no cn change seen	103592349	NA	0	NA	bkpt.assoc.cn.change	unconfirmed	MEDIUM	acde	grey	NA
59	1	186187340	186187604	1	186193235	186193698	+	-	2	2	1	2	12	(acde)	1	+	186187442	186187445	GAA	null	1	+	186193586	186193589	99	6144	1	1	1	1	acde	na	103556323	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
60	1	186382315	186382620	1	186386493	186386792	+	-	2	11	6	4	13	(acde)	1	+	186382413	0	null	ATAATGCAAATAATC	1	+	186386702	0	91	4289	1	1	1	1	acde	na	103592356	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
61	1	192865180	192865505	1	200465393	200465781	+	-	2	3	3	0	8	(ac-e)	1	+	192865271	192865272	A	null	1	+	200465685	200465686	99	7600414	1	1	0	1	ace	na	103556325	stCE00-859181	SOMATIC_VAL	ACE	pcr.gel.electro.AndCNchange	somatic	HIGH	ace	yellow	LATE
62	1	193963681	193964165	1	195266026	195266342	-	+	4	3	4	0	8	(ac-e)	1	-	193964040	0	null	ATGGATAAGATGT	1	-	195266119	0	97	1302079	1	1	0	1	ace	na	103556326	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	ace	yellow	LATE
63	1	193967914	193968169	1	197583385	197583729	+	-	2	4	3	0	10	(ac-e)	1	+	193968007	193968010	GGC	null	1	+	197583633	197583636	99	3615626	1	1	0	1	ace	na	103592360	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	ace	yellow	LATE
64	1	194993999	194994363	1	205732354	205732879	-	+	4	0	0	0	5	(---e)	1	-	194994268	0	null	ATTCAGACAAATGAAAGAATATTGATAATTGAGGCTAAGTTTACAGGTAAAGGGATAACCAAAGTTTTAGAACTGAGAAAGTTC	1	-	205732461	0	97	10738193	?1(subclonal)	?1(subclonal)	0	1	e	na	103556328	stCE00-859180	SOMATIC_VAL	CE	pcr.gel.electro.AndCNchange	somatic	HIGH	e	red	LATE
65	1	195266322	195266669	1	202675981	202676395	-	-	8	1	2	0	10	(ac-e)	1	-	195266543	195266540	AAT	null	1	+	202676279	202676282	98	7409736	1	1	0	1	ace	na	103592369	stCE00-859179	SOMATIC_VAL	CE	pcr.gel.electro.AndCNchange	somatic	HIGH	ace	yellow	LATE
66	1	195269891	195270462	1	203735029	203735448	-	-	8	3	2	0	4	(ac-e)	1	-	195270283	195270279	CAGC	null	1	+	203735354	203735358	96	8465071	1	1	0	1	ace	na	103592370	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	ace	yellow	LATE
68	1	215749487	215749937	19	5309295	5309695	-	+	32	7	2	0	0	(ac--)	1	-	215749838	215749836	AA	null	19	-	5309412	5309410	72	NA	1	1	0	0	ac	na	103592376	stCE00-859103	FAIL	NA	bkpt.assoc.cn.change	somatic	HIGH	ac	blue	LATE
69	1	219654344	219654770	1	224213645	224214025	+	-	2	7	6	0	0	(ac--)	1	+	219654446	219654449	GCT	null	1	+	224213918	224213921	98	4559472	1	1	0	0	ac	na	103592366	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	ac	blue	LATE
71	1	229758011	229758476	1	229783950	229784385	+	-	2	0	0	8	0	(--d-)	1	+	229758120	229758122	CT	null	1	+	229784242	229784244	96	26122	0	0	1	0	d	na	103587257	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	d	purple	LATE
73	1	234108121	234108441	19	42790111	42790461	+	-	32	11	5	0	18	(ac-e)	1	+	234108215	0	null	TT	19	+	42790364	0	99	NA	1	1	0	1	ace	na	103592373	stCE00-859117	SOMATIC_VAL	E	pcr.gel.electro.AndCNchange	somatic	HIGH	ace	yellow	LATE
74	1	239746935	239747257	11	77361849	77362178	-	-	32	12	3	6	32	(acde)	1	-	239747169	0	null	null	11	+	77362087	0	99	NA	1	1	1	1	acde	na	103592375	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
75	1	240660616	240660930	16	12432585	12432973	+	+	32	0	0	36	0	(--d-)	1	+	240660712	240660715	AAT	null	16	-	12432690	12432687	97	NA	0	0	1	0	d	na	103587259	stCE00-859138	FAIL	NA	bkpt.assoc.cn.change	somatic	HIGH	d	purple	LATE
77	1	241746924	241747538	5	116886552	116886932	-	-	32	0	1	1	9	(-cde)	1	-	241747443	0	null	T	5	+	116886776	0	89	NA	1	1	1	1	acde	na	103556335	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
82	2	7962918	7963243	5	41169293	41169567	+	+	32	30	15	26	102	(acde)	2	+	7963008	0	null	TATTATT	5	-	41169384	0	99	NA	1	1	1	1	acde	na	103592380	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
83	2	9443947	9444259	2	10691496	10691806	-	+	4	15	3	0	55	(ac-e)	2	-	9444164	0	null	C	2	-	10691589	0	99	1247425	1	1	1	1	acde	na	103592382	stCE00-859102	SOMATIC_VAL	E	pcr.gel.electro.AndCNchange	somatic	HIGH	acde	grey	EARLY
85	2	19513633	19514018	7	118056486	118056807	-	+	32	5	1	0	11	(ac-e)	2	-	19513911	0	null	null	7	-	118056613	0	99	NA	1	1	0	1	ace	na	103592386	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	ace	yellow	LATE
86	2	23143144	23143511	7	117809399	117809579	-	+	32	4	1	6	15	(acde)	2	-	23143416	23143415	A	null	7	-	117809491	117809490	100	NA	1	1	1	1	acde	na	103592387	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
87	2	25969855	25970311	2	25976240	25976749	+	-	2	5	0	0	0	(a---)	2	+	25970008	25970009	G	null	2	+	25976648	25976649	98	6640	1	0	0	0	na	no cn change seen	103592389	NA	0	NA	bkpt.assoc.cn.change	unconfirmed	MEDIUM	a	green	NA
88	2	27509967	27510244	5	124925871	124926230	+	-	32	2	3	5	7	(acde)	2	+	27510066	0	null	null	5	+	124926110	0	96	NA	1	1	1	1	acde	na	103587262	stCE00-859177	SOMATIC_VAL	ACDE	pcr.gel.electro.AndCNchange	somatic	HIGH	acde	grey	EARLY
89	2	27984246	27984542	5	91135332	91135650	-	+	32	4	1	4	13	(acde)	2	-	27984451	27984449	AA	null	5	-	91135429	91135427	99	NA	1	1	1	1	acde	na	103592393	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
90	2	29306658	29307050	19	32943652	32944095	+	-	32	3	0	2	5	(a-de)	2	+	29306813	29306816	TGT	null	19	+	32943967	32943970	98	NA	1	1	0	1	ace	na	103556342	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	ace	yellow	LATE
92	2	34293977	34294295	2	34625606	34625901	-	+	4	7	2	5	22	(acde)	2	-	34294206	34294203	CAC	null	2	-	34625714	34625711	97	331508	1	1	1	1	acde	na	103592394	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
93	2	34434192	34434544	10	20846046	20846560	+	-	32	0	0	1	6	(--de)	2	+	34434268	0	null	GCTATACACTAACAACAGTCAAGGTGAGGGCCAAAACAGGAATGCAATC	10	+	20846452	0	97	NA	1	1	1	1	acde	na	103556344	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
95	2	34567669	34568165	7	115975507	115975791	-	-	32	1	2	2	7	(acde)	2	-	34568071	34568068	GAG	null	7	+	115975669	115975672	97	NA	1	1	1	1	acde	na	103556346	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
94	2	34568229	34568713	7	117997751	117998132	+	-	32	4	0	4	12	(a-de)	2	+	34568326	0	null	null	7	+	117998012	0	94	NA	0	0	0	0	na	no cn change seen	103556345	NA	0	NA	bkpt.assoc.cn.change	unconfirmed	MEDIUM	ade	na	NA
96	2	35259374	35259772	7	107470505	107470961	-	+	32	4	2	0	10	(ac-e)	2	-	35259671	35259666	TCTGG	null	7	-	107470601	107470596	80	NA	1	1	1	1	acde	na	103592396	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
97	2	35463569	35463993	20	37994212	37994576	+	+	32	0	3	6	10	(-cde)	2	+	35463644	0	null	GAAAGCTGAACTGAAGGAAGTCAAGACATGAAAAACCATT	20	-	37994302	0	97	NA	1	1	1	1	acde	na	103556348	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
98	2	35745707	35746328	2	36522778	36523144	-	-	8	2	2	2	4	(acde)	2	-	35746230	0	null	TCAAAATTGAAAGAATGCCAAAATATCCCATTCTGAC	2	+	36522976	0	99	776746	1	1	1	1	acde	na	103556349	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
100	2	35757366	35757675	20	37548828	37549177	-	+	32	1	1	0	5	(ac-e)	2	-	35757666	0	null	TTGACAAAGGGCTAATATACAGAATTTACAAAGAACTCAAACAAATTTACAAGAAAAAAAGAAACGACCCCATTAAAAAGTGGGCGAAGG	20	-	37548944	0	99	NA	1	1	1	1	acde	na	103556351	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
101	2	35765043	35765479	20	38144602	38144946	+	+	32	1	0	4	12	(a-de)	2	+	35765151	0	null	CCTTTCCTATTCAAATTTATTAGAATTCTAAGGTAAAGT	20	-	38144692	0	94	NA	1	1	1	1	acde	na	103587268	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
102	2	36756484	36756731	8	38119212	38119528	+	+	32	1	1	6	26	(acde)	2	+	36756578	36756580	TA	null	8	-	38119305	38119303	98	NA	1	1	1	1	acde	na	103587269	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
103	2	37858161	37858477	20	33559724	33560100	+	-	32	5	1	2	8	(acde)	2	+	37858253	37858254	T	null	20	+	33559995	33559996	100	NA	1	1	1	1	acde	na	103592397	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
104	2	38178442	38178763	8	57140048	57140322	+	+	32	15	10	12	43	(acde)	2	+	38178534	0	null	null	8	-	57140142	0	99	NA	1	1	1	1	acde	na	103592398	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
105	2	68726601	68727003	2	68832657	68833103	+	-	2	0	0	1	6	(--de)	2	+	68726707	0	null	AAGTTTATACAAAACAAATTTTGTTTTAATAAGTTTTATGGAAAATATATGTGAGCCAGA	2	+	68832997	0	96	106290	1	1	1	1	acde	na	103556356	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
108	2	83306867	83307294	8	37055495	37055898	-	-	32	0	0	4	0	(--d-)	2	-	83307150	83307149	A	null	8	+	37055757	37055758	100	NA	0	0	1	0	d	na	103588221	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	d	purple	LATE
111	2	95559792	95560391	19	5910559	5910925	-	-	32	1	3	0	6	(ac-e)	2	-	95560272	0	null	null	19	+	5910827	0	93	NA	1	1	0	1	ace	na	103556360	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	ace	yellow	LATE
114	2	98674249	98674578	9	110993624	110993930	+	+	32	1	3	2	10	(acde)	2	+	98674353	98674356	TTA	null	9	-	110993718	110993715	99	NA	1	1	1	1	acde	na	103556362	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
117	2	129788302	129788906	20	48967619	48968031	-	-	32	0	0	0	4	(---e)	2	-	129788818	129788815	TCT	null	20	+	48967824	48967827	88	NA	0	0	0	1	e	na	103556365	stCE00-859176	FAIL	NA	bkpt.assoc.cn.change	somatic	HIGH	e	red	LATE
118	2	131018123	131018439	6	91741155	91741467	+	+	32	0	0	0	18	(---e)	2	+	131018223	131018224	G	null	6	-	91741251	91741250	99	NA	0	0	0	1	e	na	103556366	stCE00-859175	SOMATIC_VAL	E	pcr.gel.electro.AndCNchange	somatic	HIGH	e	red	LATE
120	2	135851949	135852310	2	136160023	136160372	+	-	2	0	3	5	10	(-cde)	2	+	135852039	135852041	GA	null	2	+	136160260	136160262	99	308221	1	1	1	1	acde	na	103588222	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
122	2	142933308	142933595	8	84847719	84848071	-	-	32	5	2	7	19	(acde)	2	-	142933478	0	null	null	8	+	84847979	0	100	NA	1	1	1	1	acde	na	103592418	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
123	2	142935950	142936230	2	171356229	171356547	+	+	1	6	3	5	33	(acde)	2	+	142936046	142936049	AGG	null	2	-	171356330	171356327	96	28420284	1	1	1	1	acde	na	103592419	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
125	2	153080625	153081025	2	168073797	168074110	-	-	8	9	5	6	22	(acde)	2	-	153080920	0	null	null	2	+	168074007	0	99	14993087	1	1	1	1	acde	na	103592421	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
128	2	171349276	171349623	8	84847551	84847859	+	+	32	8	5	2	21	(acde)	2	+	171349364	171349369	AGCAA	null	8	-	84847650	84847645	94	NA	1	1	1	1	acde	na	103592426	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
129	2	171354791	171355103	8	84846682	84846999	-	-	32	6	1	11	24	(acde)	2	-	171355010	0	null	null	8	+	84846905	0	97	NA	1	1	1	1	acde	na	103592427	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
130	2	196090039	196090376	10	109223579	109224195	+	-	32	1	0	4	2	(a-de)	2	+	196090158	196090213	TCTCTCAGACCACAGTGCAATCAAACTAGAACTCAGGATTAAGAATCTCACTCAA	null	10	+	109224088	109224143	99	NA	0	0	0	0	na	no cn change seen	103588227	NA	0	NA	bkpt.assoc.cn.change	unconfirmed	MEDIUM	ade	na	NA
133	2	199590022	199590438	2	208878755	208879153	-	-	8	2	3	3	10	(acde)	2	-	199590345	0	null	null	2	+	208879034	0	99	9288689	1	1	1	1	acde	na	103556377	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
134	2	201208971	201209267	2	201210260	201210657	+	-	2	7	2	3	8	(acde)	2	+	201209063	201209064	T	null	2	+	201210564	201210565	84	1501	0	0	0	0	na	no cn change seen	103556378	NA	0	NA	bkpt.assoc.cn.change	unconfirmed	MEDIUM	acde	grey	NA
135	2	206214158	206214508	7	54340685	54341238	+	+	32	0	0	1	6	(--de)	2	+	206214274	206214276	AA	null	7	-	54340846	54340844	97	NA	0	0	0	0	na	no cn change seen	103556379	stCE00-859174	FAIL	NA	pcr.gel.electro.AndCNchange	unconfirmed	MEDIUM	de	na	NA
138	2	210717401	210717767	2	210978196	210978471	+	+	1	7	0	5	10	(a-de)	2	+	210717488	210717493	TGTTT	null	2	-	210978308	210978303	95	260820	1	1	1	1	acde	na	103592437	stCE00-859173	FAIL	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
141	3	559195	559438	3	560675	561081	-	-	8	4	3	3	14	(acde)	3	-	559352	559348	TGTA	null	3	+	560989	560993	70	1637	1	1	1	1	acde	na	103592452	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
142	3	1291300	1291630	X	100549769	100550071	+	+	32	2	2	3	20	(acde)	3	+	1291394	0	null	null	X	-	100549864	0	90	NA	1	1	1	1	acde	na	103592453	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
143	3	1471090	1471450	3	87947292	87947727	-	-	8	0	0	5	6	(--de)	3	-	1471340	1471338	TC	null	3	+	87947635	87947637	94	86476295	1	1	1	1	acde	na	103556383	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
145	3	4327765	4328272	16	17145525	17145956	+	+	32	0	0	4	0	(--d-)	3	+	4327932	4327934	CA	null	16	-	17145638	17145636	94	NA	0	0	1	0	d	na	103588230	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	d	purple	LATE
147	3	5629299	5629695	X	90004710	90005151	-	+	32	1	0	0	8	(a--e)	3	-	5629531	5629528	TAT	null	X	-	90004814	90004811	99	NA	0	0	0	1	e	na	103556384	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	e	red	LATE
148	3	5639837	5640232	X	63969499	63970098	+	+	32	1	1	0	5	(ac-e)	3	+	5639989	0	null	ACTTA	X	-	63969624	0	69	NA	1	1	1	1	acde	na	103556385	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
150	3	56959028	56959429	3	56994317	56994684	+	-	2	1	1	1	7	(acde)	3	+	56959143	56959144	C	null	3	+	56994535	56994536	87	35392	1	1	1	1	acde	na	103556386	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
152	3	83989070	83989330	14	55122683	55123015	-	+	32	10	6	7	22	(acde)	3	-	83989238	83989235	TTA	null	14	-	55122772	55122769	100	NA	1	1	1	1	acde	na	103592454	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
153	3	85498079	85498402	18	68043146	68043413	-	-	32	7	4	9	5	(acde)	3	-	85498308	0	null	null	18	+	68043316	0	95	NA	1	1	1	1	acde	na	103588233	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
154	3	85519161	85519464	3	89056754	89057099	+	+	1	14	8	12	29	(acde)	3	+	85519251	85519253	TG	null	3	-	89056851	89056849	99	3537600	1	1	1	1	acde	na	103592456	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
155	3	85872079	85872468	6	11243294	11243611	-	-	32	0	0	6	8	(--de)	3	-	85872372	85872370	TA	null	6	+	11243503	11243505	100	NA	1	1	1	1	acde	na	103556391	stCE00-859172	SOMATIC_VAL	ACDE	pcr.gel.electro.AndCNchange	somatic	HIGH	acde	grey	EARLY
156	3	89049179	89049365	18	67801918	67802158	-	-	32	17	6	15	28	(acde)	3	-	89049270	89049265	CTAAT	null	18	+	67802067	67802072	100	NA	1	1	1	1	acde	na	103592458	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
158	3	107762447	107762825	3	107784006	107784344	-	+	4	4	2	2	6	(acde)	3	-	107762716	107762714	GT	null	3	-	107784103	107784101	93	21387	1	1	1	1	acde	na	103592459	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
159	3	107767335	107767762	3	107803240	107803655	+	-	2	0	0	0	4	(---e)	3	+	107767428	0	null	null	3	+	107803512	0	98	36084	0	0	0	1	e	na	103556394	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	e	red	LATE
160	3	107797727	107798115	3	107803901	107804283	-	+	4	3	1	2	9	(acde)	3	-	107798018	107798016	AT	null	3	-	107803999	107803997	99	5981	1	1	1	1	acde	na	103556395	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
161	3	115041233	115041781	3	115041915	115042438	+	+	1	0	0	0	4	(---e)	3	+	115041330	0	null	null	3	-	115042130	0	75	800	0	0	0	0	na	no cn change seen	103556396	NA	0	NA	bkpt.assoc.cn.change	unconfirmed	MEDIUM	e	red	NA
163	3	141899706	141900011	3	141928999	141929391	+	-	2	3	3	0	10	(ac-e)	3	+	141899796	141899799	CTG	null	3	+	141929289	141929292	100	29493	1	1	1	1	acde	na	103556397	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
166	3	182370350	182370655	3	182373681	182374052	+	-	2	4	0	4	7	(a-de)	3	+	182370461	182370464	TAT	null	3	+	182373955	182373958	74	3494	1	1	1	1	acde	na	103588237	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
167	3	182974987	182975416	3	182975824	182976280	+	-	2	2	1	3	9	(acde)	3	+	182975077	0	null	null	3	+	182976178	0	100	1101	1	1	1	1	acde	na	103556400	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
169	3	197681553	197681868	17	7929644	7929894	+	+	32	20	8	12	23	(acde)	3	+	197681643	197681644	G	null	17	-	7929739	7929738	98	NA	1	1	1	1	acde	na	103592479	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
173	4	4447312	4447742	4	4503030	4503461	+	-	2	0	0	5	13	(--de)	4	+	4447432	4447433	A	null	4	+	4503362	4503363	80	55930	1	1	1	1	acde	na	103588239	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
175	4	23945533	23945791	4	36227138	36227358	-	-	8	120	56	133	261	(acde)	4	-	23945699	0	null	null	4	+	36227268	0	97	12281569	1	1	1	1	acde	na	103592483	stCE00-859115	SOMATIC_VAL	ACDE	pcr.gel.electro.AndCNchange	somatic	HIGH	acde	grey	EARLY
176	4	24307384	24307619	6	69882045	69882297	+	-	32	65	49	40	208	(acde)	4	+	24307474	24307476	GG	null	6	+	69882203	69882205	94	NA	1	1	1	1	acde	na	103592484	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
177	4	36295996	36296327	4	36306800	36307048	-	-	8	8	12	7	46	(acde)	4	-	36296235	0	null	null	4	+	36306951	0	94	10716	1	1	1	1	acde	na	103592487	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
178	4	36600565	36600736	21	24679392	24679658	+	-	32	90	60	99	301	(acde)	4	+	36600647	36600649	AA	null	21	+	24679565	24679567	93	NA	1	1	1	1	acde	na	103592488	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
179	4	36940668	36940953	12	65935875	65936132	+	-	32	32	18	41	90	(acde)	4	+	36940762	0	null	T	12	+	65936043	0	99	NA	1	1	1	1	acde	na	103592489	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
180	4	38661314	38661699	X	56556743	56556996	-	-	32	2	3	6	9	(acde)	4	-	38661606	38661605	T	null	X	+	56556899	56556900	99	NA	1	1	1	1	acde	na	103588245	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
181	4	38792912	38793221	4	40155042	40155339	-	+	4	2	0	5	10	(a-de)	4	-	38793127	38793123	AAAT	null	4	-	40155133	40155129	100	1362006	1	1	1	1	acde	na	103588246	stCE00-859137	SOMATIC_VAL	ACDE	pcr.gel.electro.AndCNchange	somatic	HIGH	acde	grey	EARLY
182	4	39959854	39960229	8	41398679	41399036	+	-	32	1	4	2	5	(acde)	4	+	39959958	39959959	T	null	8	+	41398927	41398928	99	NA	1	1	1	1	acde	na	103556412	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
183	4	44079914	44079925	12	59118986	59119220	-	+	32	65	40	77	176	(acde)	4	-	44079837	44079836	T	null	12	-	59119074	59119073	98	NA	1	1	1	1	acde	na	103592523	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
184	4	44326692	44326977	12	58473753	58474021	+	-	32	41	16	50	115	(acde)	4	+	44326780	44326781	T	null	12	+	58473929	58473930	99	NA	1	1	1	1	acde	na	103592492	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
185	4	44698764	44699062	12	65162368	65162676	-	-	32	18	14	13	53	(acde)	4	-	44698974	44698972	AG	null	12	+	65162582	65162584	98	NA	1	1	1	1	acde	na	103592493	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
186	4	44955750	44956060	X	140383039	140383383	+	+	32	2	1	3	7	(acde)	4	+	44955840	0	null	null	X	-	140383136	0	99	NA	0	0	0	0	na	no cn change seen	103556416	NA	0	NA	bkpt.assoc.cn.change	unconfirmed	MEDIUM	acde	grey	NA
187	4	44961287	44961605	X	148301048	148301337	-	+	32	1	3	1	8	(acde)	4	-	44961510	44961509	A	null	X	-	148301147	148301146	99	NA	0	0	0	0	na	no cn change seen	103556417	NA	0	NA	bkpt.assoc.cn.change	unconfirmed	MEDIUM	acde	grey	NA
188	4	45287346	45287586	12	64560805	64561070	-	+	32	17	9	9	38	(acde)	4	-	45287494	45287493	G	null	12	-	64560898	64560897	100	NA	1	1	1	1	acde	na	103592494	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
189	4	45308981	45309229	12	58001688	58001959	+	-	32	65	41	90	196	(acde)	4	+	45309073	45309074	A	null	12	+	58001865	58001866	95	NA	1	1	1	1	acde	na	103592495	stCE00-859101	SOMATIC_VAL	ACDE	pcr.gel.electro.AndCNchange	somatic	HIGH	acde	grey	EARLY
190	4	48110924	48111198	X	148356507	148356825	-	-	32	6	2	37	0	(acd-)	4	-	48111107	48111105	AA	null	X	+	148356730	148356732	100	NA	1	1	1	0	acd	na	103592497	stCE00-859100	SOMATIC_VAL	ACD	pcr.gel.electro.AndCNchange	somatic	HIGH	acd	na	LATE
191	4	48818568	48819025	4	48819754	48820104	-	+	4	5	0	3	0	(a-d-)	4	-	48818877	0	null	CAGCC	4	-	48819864	0	88	987	0	0	0	0	na	no cn change seen	103592498	NA	0	NA	bkpt.assoc.cn.change	unconfirmed	MEDIUM	ad	na	NA
193	4	48890951	48891247	8	37945278	37945596	+	-	32	4	1	9	0	(acd-)	4	+	48891066	0	null	null	8	+	37945495	0	99	NA	0	0	1	0	acd	na	103592499	stCE00-859099	SOMATIC_VAL	ACD	pcr.gel.electro.AndCNchange	somatic	HIGH	acd	na	LATE
194	4	48918364	48918735	8	40390817	40391295	-	-	32	3	3	14	0	(acd-)	4	-	48918641	0	null	TAATGTAAACTAAAAAAATTGAA	8	+	40391218	0	99	NA	0	0	1	0	d	na	103592532	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	d	purple	LATE
195	4	53600507	53600818	17	26841153	26841477	-	-	32	7	4	6	17	(acde)	4	-	53600726	0	null	C	17	+	26841387	0	97	NA	1	1	1	1	acde	na	103592500	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
196	4	54749304	54749619	6	68118887	68119211	-	-	32	8	5	7	14	(acde)	4	-	54749531	54749528	AAA	null	6	+	68119120	68119123	89	NA	1	1	1	1	acde	na	103592501	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
197	4	56093037	56093356	11	133578171	133578505	+	+	32	11	4	7	16	(acde)	4	+	56093131	0	null	TCAGAAACAAAAGCACAA	11	-	133578252	0	97	NA	1	1	1	1	acde	na	103592502	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
199	4	59736122	59736549	4	59817136	59817557	+	-	2	0	0	7	0	(--d-)	4	+	59736239	59736241	AT	null	4	+	59817453	59817455	95	81214	1	1	1	1	acde	na	103588259	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
200	4	60553221	60553682	5	4486432	4486662	-	+	32	0	0	6	7	(--de)	4	-	60553574	60553569	TTTCT	null	5	-	4486543	4486538	98	NA	0	0	0	1	e	na	103556473	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	e	red	LATE
201	4	60780412	60780749	4	60781130	60781477	-	+	4	3	1	10	16	(acde)	4	-	60780656	60780654	TA	null	4	-	60781226	60781224	72	570	0	0	0	0	na	no cn change seen	103556474	NA	0	NA	bkpt.assoc.cn.change	unconfirmed	MEDIUM	acde	grey	NA
204	4	64679106	64679363	5	39558596	39558837	-	-	32	62	22	37	116	(acde)	4	-	64679270	64679267	TGG	null	5	+	39558749	39558752	99	NA	1	1	1	1	acde	na	103592504	stCE00-859114	SOMATIC_VAL	ACDE	pcr.gel.electro.AndCNchange	somatic	HIGH	acde	grey	EARLY
205	4	64776959	64777282	4	73892436	73892756	+	-	2	16	12	17	41	(acde)	4	+	64777118	64777119	T	null	4	+	73892646	73892647	94	9115528	1	1	1	1	acde	na	103592505	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
206	4	65172195	65172567	4	65381152	65381527	-	-	8	0	0	11	0	(--d-)	4	-	65172465	65172463	GC	null	4	+	65381406	65381408	96	208941	0	0	1	0	d	na	103588264	stCE00-859136	FAIL	NA	bkpt.assoc.cn.change	somatic	HIGH	d	purple	LATE
207	4	65559751	65560112	4	140144620	140144977	+	-	2	8	3	16	0	(acd-)	4	+	65559851	0	null	null	4	+	140144884	0	99	74585033	1	1	1	1	acde	na	103592506	stCE00-859098	FAIL	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
208	4	65563328	65563664	4	158840102	158840490	-	+	4	0	3	4	10	(-cde)	4	-	65563563	0	null	null	4	-	158840195	0	97	93276632	0	0	0	1	e	na	103588266	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	e	red	LATE
209	4	66701126	66701488	5	9946191	9946560	+	+	32	0	0	6	9	(--de)	4	+	66701238	66701240	GC	null	5	-	9946289	9946287	90	NA	0	0	?	1	de	na	103588267	stCE00-859135	FAIL	NA	bkpt.assoc.cn.change	somatic	HIGH	de	na	LATE
210	4	68382272	68382554	4	68383135	68383625	+	+	1	0	0	13	0	(--d-)	4	+	68382368	0	null	TATAG	4	-	68383239	0	94	871	0	0	1	0	d	na	103588268	stCE00-859134	SOMATIC_VAL	D	pcr.gel.electro.AndCNchange	somatic	HIGH	d	purple	LATE
211	4	68447131	68447504	4	152418500	152418804	+	+	1	10	0	6	25	(a-de)	4	+	68447237	68447240	TTT	null	4	-	152418600	152418597	89	83971363	1	1	1	1	acde	na	103592507	stCE00-859097	FAIL	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
214	4	72902287	72902564	4	148131201	148131514	-	+	4	15	9	14	43	(acde)	4	-	72902478	0	null	CTAAATACC	4	-	148131290	0	85	75228812	1	1	1	1	acde	na	103592508	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
215	4	74075498	74075996	4	74085209	74085722	+	+	1	1	3	0	0	(ac--)	4	+	74075697	74075699	AG	null	4	-	74085306	74085304	95	9609	0	0	0	0	na	no cn change seen	103592556	NA	0	NA	bkpt.assoc.cn.change	unconfirmed	MEDIUM	ac	na	NA
216	4	76215484	76215753	4	151269283	151269474	+	+	1	47	17	25	73	(acde)	4	+	76215575	0	null	null	4	-	151269379	0	92	75053804	1	1	1	1	acde	na	103592509	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
217	4	77625897	77626084	4	151961757	151962080	+	+	1	9	11	5	30	(acde)	4	+	77625990	0	null	null	4	-	151961849	0	97	74335859	1	1	1	1	acde	na	103592510	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
218	4	77626261	77626537	6	91165184	91165465	-	-	32	81	24	29	135	(acde)	4	-	77626439	77626438	A	null	6	+	91165372	91165373	97	NA	1	1	1	1	acde	na	103592562	stCE00-859113	SOMATIC_VAL	ACE	pcr.gel.electro.AndCNchange	somatic	HIGH	acde	grey	EARLY
219	4	77634652	77634917	6	80023104	80023372	+	-	32	65	31	32	135	(acde)	4	+	77634739	77634743	ATAA	null	6	+	80023281	80023285	99	NA	1	1	1	1	acde	na	103592512	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
220	4	77643630	77643886	6	135785709	135785958	-	+	32	77	32	54	161	(acde)	4	-	77643798	77643792	TACACA	null	6	-	135785800	135785794	100	NA	1	1	1	1	acde	na	103592513	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
221	4	77687356	77687639	6	80029530	80029776	+	+	32	29	21	31	114	(acde)	4	+	77687445	77687446	C	null	6	-	80029623	80029622	94	NA	1	1	1	1	acde	na	103592514	stCE00-859096	SOMATIC_VAL	ACDE	pcr.gel.electro.AndCNchange	somatic	HIGH	acde	grey	EARLY
223	4	122212576	122212887	12	47114398	47114794	-	-	32	4	3	3	3	(acde)	4	-	122212774	122212770	ATGT	null	12	+	47114684	47114688	99	NA	1	1	1	1	acde	na	103592533	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
224	4	123462998	123463286	4	158870038	158870443	-	-	8	3	5	2	9	(acde)	4	-	123463193	0	null	null	4	+	158870332	0	98	35407139	1	1	1	1	acde	na	103556487	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
225	4	126387221	126387604	12	39598237	39598533	+	-	32	3	2	5	6	(acde)	4	+	126387314	126387315	A	null	12	+	39598416	39598417	95	NA	1	1	1	1	acde	na	103588579	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
226	4	128145607	128145959	8	11489875	11490328	+	-	32	4	3	1	6	(acde)	4	+	128145710	0	null	null	8	+	11490235	0	100	NA	1	1	1	1	acde	na	103592536	stCE00-859170	FAIL	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
227	4	131839918	131840285	4	134937489	134937937	-	-	8	0	0	0	13	(---e)	4	-	131840206	0	null	TAATTTTGCTAATTTATTCAAAGAACCAATTAAAAAAAAAAAAAAAAAGTGTTGGGACTGCCACATTCTAT	4	+	134937825	0	98	3097619	0	0	0	1	e	na	103556490	stCE00-859169	SOMATIC_VAL	E	pcr.gel.electro.AndCNchange	somatic	HIGH	e	red	LATE
228	4	131840162	131840580	4	133517615	133517944	-	-	8	0	0	0	14	(---e)	4	-	131840479	131840477	GT	null	4	+	133517828	133517830	96	1677349	0	0	0	1	e	na	103556491	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	e	red	LATE
229	4	132271556	132271851	4	144003803	144004086	-	+	4	10	4	10	18	(acde)	4	-	132271759	132271757	TT	null	4	-	144003901	144003899	94	11732142	1	1	1	1	acde	na	103592539	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
230	4	132272578	132272972	4	144078078	144078465	-	-	8	2	1	5	10	(acde)	4	-	132272829	132272825	GTAC	null	4	+	144078368	144078372	95	11805539	1	1	1	1	acde	na	103588581	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
231	4	132273871	132274249	4	144099257	144099728	+	-	2	1	0	1	6	(a-de)	4	+	132273996	132273997	C	null	4	+	144099626	144099627	93	11825630	1	1	1	1	acde	na	103556494	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
232	4	132277320	132277722	4	144065261	144065599	+	-	2	5	1	3	11	(acde)	4	+	132277399	132277418	ATGTATCTCAAAATAATAA	null	4	+	144065502	144065521	75	11788103	1	1	1	1	acde	na	103556495	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
233	4	132629032	132629406	4	134405265	134405707	-	+	4	2	2	0	4	(ac-e)	4	-	132629296	0	null	ACAATATTGAAACACATAATGTTTTAGTGGCAAAACCACTAAAACAGCCTTATT	4	-	134405391	0	99	1776095	1	1	1	1	acde	na	103556496	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
234	4	134410975	134411444	4	158839420	158839864	+	-	2	2	2	4	6	(acde)	4	+	134411087	134411089	TG	null	4	+	158839767	158839769	98	24428680	1	1	1	1	acde	na	103556497	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
235	4	138286835	138287140	4	158839949	158840434	-	+	4	3	3	6	3	(acde)	4	-	138287041	138287037	TTTT	null	4	-	158840070	158840066	99	20553029	1	1	1	1	acde	na	103588583	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
238	4	142566311	142566612	4	169153674	169154058	-	-	8	3	3	5	10	(acde)	4	-	142566518	0	null	null	4	+	169153956	0	95	26587438	1	1	1	1	acde	na	103588584	stCE00-859132	SOMATIC_VAL	ADE	pcr.gel.electro.AndCNchange	somatic	HIGH	acde	grey	EARLY
239	4	142761850	142762171	4	144099795	144100068	-	+	4	19	5	18	40	(acde)	4	-	142762077	142762075	AG	null	4	-	144099885	144099883	93	1337808	1	1	1	1	acde	na	103592545	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
241	4	142762534	142762835	4	144101637	144101984	+	-	2	4	1	3	14	(acde)	4	+	142762626	142762627	T	null	4	+	144101880	144101881	92	1339254	1	1	1	1	acde	na	103592547	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
242	4	142762549	142762892	4	144097043	144097305	+	-	2	7	7	5	17	(acde)	4	+	142762652	0	null	null	4	+	144097206	0	97	1334554	1	1	1	1	acde	na	103592546	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
244	4	142762897	142763334	4	144066521	144066826	-	-	8	11	5	4	7	(acde)	4	-	142763230	142763228	AT	null	4	+	144066729	144066731	92	1303499	1	1	1	1	acde	na	103592548	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
245	4	142765171	142765549	4	144069054	144069383	+	+	1	1	4	3	10	(acde)	4	+	142765286	142765291	AAACT	null	4	-	144069151	144069146	92	1303865	1	1	1	1	acde	na	103592584	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
246	4	142765365	142765621	4	144101289	144101687	+	-	2	4	1	6	9	(acde)	4	+	142765456	142765458	AG	null	4	+	144101590	144101592	88	1336134	1	1	1	1	acde	na	103592549	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
247	4	142767037	142767416	4	144103598	144104141	+	-	2	1	0	5	6	(a-de)	4	+	142767155	142767159	TATT	null	4	+	144104042	144104046	89	1336887	1	1	1	1	acde	na	103588589	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
248	4	142767715	142768131	4	144099423	144099802	-	-	8	4	1	4	4	(acde)	4	-	142768039	142768037	TC	null	4	+	144099700	144099702	93	1331661	1	1	1	1	acde	na	103588590	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
249	4	142769062	142769418	4	144097263	144097557	+	+	1	2	2	5	7	(acde)	4	+	142769155	142769156	T	null	4	-	144097367	144097366	98	1328212	1	1	1	1	acde	na	103592585	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
250	4	142769231	142769707	4	144104083	144104441	+	+	1	3	1	5	7	(acde)	4	+	142769320	0	null	null	4	-	144104241	0	99	1334921	1	1	1	1	acde	na	103556509	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
251	4	143016810	143017249	4	161289819	161290234	-	-	8	0	3	4	8	(-cde)	4	-	143017156	143017153	AAG	null	4	+	161290102	161290105	99	18272946	1	1	1	1	acde	na	103556510	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
252	4	143733306	143733722	4	148808426	148808849	+	-	2	4	2	0	5	(ac-e)	4	+	143733399	143733400	T	null	4	+	148808747	148808748	100	5075348	1	1	1	1	acde	na	103556511	stCE00-859168	SOMATIC_VAL	DE	pcr.gel.electro.AndCNchange	somatic	HIGH	acde	grey	EARLY
253	4	143827132	143827546	4	148822552	148822963	-	+	4	2	3	5	4	(acde)	4	-	143827408	143827407	A	null	4	-	148822668	148822667	100	4995260	0	0	0	1	acde	na	103588594	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
254	4	144000862	144001280	4	144079730	144080078	-	+	4	0	0	2	8	(--de)	4	-	144001190	144001188	AA	null	4	-	144079871	144079869	100	78681	1	1	1	1	acde	na	103556513	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
255	4	144002500	144002780	14	33906860	33907231	-	-	32	3	3	3	14	(acde)	4	-	144002676	0	null	null	14	+	33907138	0	100	NA	1	1	1	1	acde	na	103592590	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
257	4	144096543	144096919	4	144104151	144104511	-	+	4	5	0	5	12	(a-de)	4	-	144096817	0	null	TTCAATGGGAGTAAAATTCTCTGTTGGGTTATAATAGATAGTGATAT	4	-	144104241	0	93	7424	1	1	1	1	acde	na	103592553	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
258	4	144102067	144102369	4	144103924	144104454	+	+	1	2	0	1	5	(a-de)	4	+	144102208	144102210	AT	null	4	-	144104027	144104025	100	1819	1	1	1	1	acde	na	103556517	stCE00-859166	FAIL	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
259	4	147921730	147922177	4	154558182	154558541	+	-	2	3	0	2	7	(a-de)	4	+	147921825	147921827	AG	null	4	+	154558433	154558435	99	6636608	1	1	1	1	acde	na	103556518	stCE00-859165	SOMATIC_VAL	ACDE	pcr.gel.electro.AndCNchange	somatic	HIGH	acde	grey	EARLY
260	4	148082485	148082735	4	149601185	149601457	-	-	8	12	10	11	28	(acde)	4	-	148082643	0	null	null	4	+	149601364	0	100	1518721	1	1	1	1	acde	na	103592557	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
261	4	151202588	151202842	6	92209104	92209393	-	+	32	74	30	40	139	(acde)	4	-	151202751	151202750	T	null	6	-	92209199	92209198	100	NA	1	1	1	1	acde	na	103592559	stCE00-859112	SOMATIC_VAL	CDE	pcr.gel.electro.AndCNchange	somatic	HIGH	acde	grey	EARLY
262	4	151524367	151524638	5	40369334	40369672	+	-	32	0	1	2	14	(-cde)	4	+	151524419	0	null	ATAATTATTTTTTAATTTAGTTTTTTCGTTCTTTGGTCTAACTT	5	+	40369574	0	95	NA	1	1	1	1	acde	na	103556521	stCE00-859164	FAIL	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
263	4	151689769	151690067	5	45063278	45063540	+	+	32	6	0	3	10	(a-de)	4	+	151689879	151689883	CATT	null	5	-	45063374	45063370	99	NA	1	1	1	1	acde	na	103592560	stCE00-859095	SOMATIC_VAL	ADE	pcr.gel.electro.AndCNchange	somatic	HIGH	acde	grey	EARLY
264	4	151703210	151703634	5	44289551	44289948	-	+	32	4	4	2	5	(acde)	4	-	151703537	0	null	TTTTTTTTGTAGAGAGAGTCTTGCTCTGTCACCAGGCTGGAGTGCAG	5	-	44289651	0	99	NA	1	1	1	1	acde	na	103592597	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
265	4	151703218	151703701	5	44290530	44291042	-	-	32	2	1	1	7	(acde)	4	-	151703540	151703537	TTT	null	5	+	44290946	44290949	99	NA	1	1	1	1	acde	na	103556524	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
266	4	163145690	163145995	4	177496757	177497087	+	-	2	1	1	2	13	(acde)	4	+	163145785	163145788	ATT	null	4	+	177496986	177496989	98	14351201	1	1	1	1	acde	na	103556525	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
267	5	2742285	2742647	8	87175598	87175980	-	-	32	0	0	6	10	(--de)	5	-	2742559	2742553	TCCCTT	null	8	+	87175883	87175889	69	NA	1	1	1	1	acde	na	103556526	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
269	5	4118713	4119121	5	4193017	4193410	+	-	2	0	0	3	4	(--de)	5	+	4118816	0	null	GGG	5	+	4193290	0	99	74474	0	0	0	0	de	no cn change seen	103556528	stCE00-859163	SOMATIC_VAL	DE	pcr.gel.electro.AndCNchange	somatic	HIGH	de	na	LATE
274	5	39856206	39856635	5	39857452	39857885	+	+	1	6	3	0	0	(ac--)	5	+	39856296	39856301	ATCAT	null	5	-	39857552	39857547	90	1256	1	1	0	0	ac	na	103592588	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	ac	blue	LATE
275	5	40368833	40369251	5	44773147	44773430	-	-	8	4	5	1	6	(acde)	5	-	40369159	0	null	null	5	+	44773334	0	99	4404175	1	1	1	1	acde	na	103592615	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
277	5	42726156	42726466	5	42967135	42967430	+	-	2	8	3	9	19	(acde)	5	+	42726249	42726250	G	null	5	+	42967321	42967322	97	241072	1	1	1	1	acde	na	103592593	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
278	5	44287388	44287755	5	44292206	44292510	+	+	1	4	2	1	9	(acde)	5	+	44287479	44287482	TCA	null	5	-	44292298	44292295	99	4819	1	1	1	1	acde	na	103592595	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
279	5	58398920	58399350	5	59526765	59527085	+	-	2	6	6	6	4	(acde)	5	+	58399014	58399020	TGATCT	null	5	+	59526999	59527005	98	1127985	1	1	1	1	acde	na	103592598	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
281	5	78965560	78965995	5	118537855	118538154	+	+	1	0	0	0	10	(---e)	5	+	78965659	78965660	C	null	5	-	118537958	118537957	100	39572299	0	0	0	0	na	no cn change seen	103556534	NA	0	NA	bkpt.assoc.cn.change	unconfirmed	MEDIUM	e	red	NA
282	5	78965261	78965759	5	118537731	118538073	-	-	8	0	0	0	8	(---e)	5	-	78965664	0	null	CCTA	5	+	118537966	0	94	39572302	0	0	0	0	na	no cn change seen	103556535	NA	0	NA	bkpt.assoc.cn.change	unconfirmed	MEDIUM	e	red	NA
283	5	89715508	89715873	5	132407868	132408121	-	+	4	3	3	4	12	(acde)	5	-	89715782	89715780	GA	null	5	-	132407963	132407961	98	42692181	1	1	1	1	acde	na	103556536	stCE00-859131	SOMATIC_VAL	ACDE	pcr.gel.electro.AndCNchange	somatic	HIGH	acde	grey	EARLY
286	5	97522307	97522857	9	83580753	83581151	-	+	32	6	1	7	4	(acde)	5	-	97522748	97522746	CA	null	9	-	83580854	83580852	76	NA	1	1	1	1	acde	na	103592603	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
285	5	97522837	97523383	9	83581310	83581592	+	+	32	9	2	9	12	(acde)	5	+	97522945	0	null	null	9	-	83581419	0	79	NA	1	1	1	1	acde	na	103592623	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
287	5	102157943	102158255	12	64612650	64612940	-	+	32	13	7	23	41	(acde)	5	-	102158162	0	null	null	12	-	64612743	0	100	NA	1	1	1	1	acde	na	103592604	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
289	5	102220011	102220356	5	107123588	107123886	-	+	4	4	1	5	13	(acde)	5	-	102220259	102220257	TA	null	5	-	107123690	107123688	95	4903431	1	1	1	1	acde	na	103592605	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
291	5	103881542	103881886	12	59475508	59475853	-	+	32	3	2	2	11	(acde)	5	-	103881793	0	null	null	12	-	59475598	0	97	NA	0	0	0	1	e	na	103592625	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	e	red	LATE
292	5	104021837	104022223	8	53525914	53526184	+	-	32	4	2	2	12	(acde)	5	+	104021942	104021944	TG	null	8	+	53526091	53526093	92	NA	0	0	0	0	na	no cn change seen	103556543	NA	0	NA	bkpt.assoc.cn.change	unconfirmed	MEDIUM	acde	grey	NA
293	5	104487184	104487671	12	57948319	57948769	+	+	32	5	1	3	0	(acd-)	5	+	104487375	104487376	T	null	12	-	57948412	57948411	100	NA	1	1	1	1	acde	na	103592607	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
294	5	105556867	105557091	14	51041264	51041599	-	+	32	13	1	9	28	(acde)	5	-	105557000	105556999	C	null	14	-	51041355	51041354	96	NA	1	1	1	1	acde	na	103588609	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
295	5	106573597	106573995	5	106742899	106743294	-	+	4	1	2	7	11	(acde)	5	-	106573883	106573881	CA	null	5	-	106743002	106743000	99	169119	1	1	1	1	acde	na	103588610	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
296	5	107107044	107107478	X	143811245	143811537	-	-	32	3	2	2	8	(acde)	5	-	107107389	107107386	ACA	null	X	+	143811428	143811431	96	NA	1	1	1	1	acde	na	103592630	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
297	5	107315029	107315455	5	107692512	107692821	+	-	2	2	4	2	11	(acde)	5	+	107315124	0	null	AGAGCATTCACAAAAAATCAGGCAGCAAA	5	+	107692717	0	95	377593	1	1	1	1	acde	na	103556547	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
299	5	122782434	122782711	18	63985966	63986235	+	+	32	12	7	16	51	(acde)	5	+	122782523	122782525	AT	null	18	-	63986060	63986058	98	NA	1	1	1	1	acde	na	103592610	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
300	5	126656219	126656635	12	59657506	59657863	-	+	32	7	1	12	18	(acde)	5	-	126656513	126656512	C	null	12	-	59657608	59657607	99	NA	1	1	1	1	acde	na	103592612	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
303	5	176898136	176898472	5	177057928	177058348	-	+	4	0	3	1	8	(-cde)	5	-	176898322	0	null	T	5	-	177058022	0	98	159700	0	0	0	1	e	na	103556551	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	e	red	LATE
304	6	1752680	1753007	6	2354370	2354753	+	-	2	2	2	0	13	(ac-e)	6	+	1752781	0	null	GTTCTCCACTATACACT	6	+	2354643	0	99	601862	1	1	1	1	acde	na	103556552	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
305	6	6506554	6506860	11	65897718	65898112	-	-	32	2	1	5	13	(acde)	6	-	6506758	6506755	TGT	null	11	+	65898007	65898010	98	NA	1	1	1	1	acde	na	103556553	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
307	6	28678647	28678979	6	28681188	28681579	-	+	4	5	4	4	0	(acd-)	6	-	28678887	0	null	null	6	-	28681286	0	77	2399	0	0	0	0	na	no cn change seen	103588615	NA	0	NA	bkpt.assoc.cn.change	unconfirmed	MEDIUM	acd	na	NA
309	6	28680707	28681005	20	21982092	21982530	-	+	32	3	3	8	5	(acde)	6	-	28680899	28680898	T	null	20	-	21982190	21982189	63	NA	1	1	1	1	acde	na	103588616	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
311	6	34545951	34546394	6	35637846	35638133	+	-	2	3	1	1	11	(acde)	6	+	34546119	34546122	AGC	null	6	+	35638036	35638039	98	1091917	1	1	1	1	acde	na	103556556	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
312	6	35798538	35798937	X	53770887	53771306	+	+	32	0	1	4	6	(-cde)	6	+	35798630	35798631	A	null	X	-	53771062	53771061	94	NA	1	1	1	1	acde	na	103556557	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
314	6	38285033	38285670	6	38288793	38289233	-	-	8	0	0	4	0	(--d-)	6	-	38285570	38285568	CA	null	6	+	38289031	38289033	94	3461	0	0	1	0	d	na	103588619	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	d	purple	LATE
316	6	39570869	39571356	19	12353759	12354122	+	-	32	0	0	11	0	(--d-)	6	+	39570991	39570992	T	null	19	+	12354013	12354014	94	NA	0	0	1	0	d	na	103588720	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	d	purple	LATE
318	6	40120172	40120643	9	83502574	83503084	-	+	32	0	0	6	0	(--d-)	6	-	40120461	40120460	A	null	9	-	83502699	83502698	98	NA	0	0	1	0	d	na	103588722	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	d	purple	LATE
320	6	65163241	65163546	6	66916091	66916405	+	-	2	1	2	4	17	(acde)	6	+	65163353	65163355	GA	null	6	+	66916302	66916304	98	1752949	1	1	1	1	acde	na	103592680	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
321	6	66872077	66872520	6	66877825	66878434	+	-	2	5	2	0	0	(ac--)	6	+	66872174	0	null	TTTTTTATTTCTC	6	+	66878296	0	98	6122	1	1	0	0	na	no cn change seen	103592637	NA	0	NA	bkpt.assoc.cn.change	unconfirmed	MEDIUM	ac	yellow	NA
322	6	67124640	67125034	6	69878206	69878522	+	-	2	0	0	6	9	(--de)	6	+	67124731	67124732	A	null	6	+	69878363	69878364	100	2753632	1	1	1	1	acde	na	103588724	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
328	6	69302211	69302509	6	106171782	106172045	+	+	1	18	15	22	39	(acde)	6	+	69302307	69302308	T	null	6	-	106171871	106171870	100	36869564	1	1	1	1	acde	na	103592640	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
329	6	69956272	69956567	21	24735782	24736042	+	+	32	47	21	44	101	(acde)	6	+	69956366	0	null	AT	21	-	24735871	0	99	NA	1	1	1	1	acde	na	103592641	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
330	6	70019735	70020001	18	55271511	55271781	+	+	32	67	40	74	179	(acde)	6	+	70019829	0	null	null	18	-	55271602	0	95	NA	1	1	1	1	acde	na	103592643	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
331	6	70330277	70330540	18	55270444	55270699	-	-	32	67	49	86	196	(acde)	6	-	70330454	70330451	ACA	null	18	+	55270607	55270610	93	NA	1	1	1	1	acde	na	103592644	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
332	6	70394402	70394707	11	85560876	85561447	+	-	32	8	2	5	20	(acde)	6	+	70394542	70394544	GA	null	11	+	85561351	85561353	92	NA	1	1	1	1	acde	na	103592645	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
333	6	70519831	70520062	10	52757105	52757348	-	-	32	40	28	77	120	(acde)	6	-	70519969	70519967	AG	null	10	+	52757252	52757254	100	NA	1	1	1	1	acde	na	103588732	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
334	6	70521785	70522023	6	70522788	70523072	+	+	1	50	26	67	132	(acde)	6	+	70521876	70521877	C	null	6	-	70522881	70522880	95	1005	1	1	1	1	acde	na	103592647	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
335	6	77792265	77792662	6	86452871	86453297	+	-	2	0	0	3	5	(--de)	6	+	77792383	77792385	TC	null	6	+	86453191	86453193	74	8660808	0	0	1	1	de	na	103556568	stCE00-859161	FAIL	NA	bkpt.assoc.cn.change	somatic	HIGH	de	na	LATE
338	6	86829986	86830388	X	80419169	80419691	+	+	32	0	0	1	6	(--de)	6	+	86830080	86830082	CT	null	X	-	80419275	80419273	100	NA	0	0	0	1	e	na	103556569	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	e	red	LATE
341	6	96001387	96001705	6	96075652	96075931	+	-	2	3	5	4	4	(acde)	6	+	96001488	96001489	A	null	6	+	96075830	96075831	100	74342	1	1	1	1	acde	na	103592693	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
342	6	105252572	105252878	6	116913388	116913706	-	+	4	21	10	16	15	(acde)	6	-	105252760	105252755	AGAAG	null	6	-	116913481	116913476	97	11660721	1	1	1	1	acde	na	103592651	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
343	6	105389982	105390237	11	77692147	77692441	-	+	32	37	23	30	105	(acde)	6	-	105390147	105390145	GC	null	11	-	77692236	77692234	95	NA	1	1	1	1	acde	na	103592652	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
344	6	105679726	105680075	X	144159436	144159733	-	+	32	2	2	6	28	(acde)	6	-	105679957	105679954	CAT	null	X	-	144159534	144159531	95	NA	1	1	1	1	acde	na	103592697	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
345	6	105711907	105712222	6	105721657	105721962	+	-	2	7	3	7	11	(acde)	6	+	105711997	105712000	CTA	null	6	+	105721869	105721872	93	9872	1	1	1	1	acde	na	103592654	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
346	6	105754366	105754645	12	65671972	65672431	+	+	32	4	0	0	9	(a--e)	6	+	105754467	105754468	C	null	12	-	65672071	65672070	95	NA	1	1	1	1	acde	na	103592655	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
347	6	105767618	105767873	12	65684535	65684807	+	+	32	36	16	40	144	(acde)	6	+	105767709	0	null	null	12	-	65684628	0	94	NA	1	1	1	1	acde	na	103592657	stCE00-859111	SOMATIC_VAL	ACDE	pcr.gel.electro.AndCNchange	somatic	HIGH	acde	grey	EARLY
348	6	106140797	106141227	6	106142111	106142414	-	-	8	0	0	0	7	(---e)	6	-	106141121	106141119	TC	null	6	+	106142319	106142321	67	1198	0	0	0	1	e	na	103556627	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	e	red	LATE
349	6	106339736	106339988	11	58943227	58943240	-	+	32	65	38	107	223	(acde)	6	-	106339893	0	null	null	11	-	58943321	0	92	NA	1	1	1	1	acde	na	103592658	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
351	6	106936372	106936742	6	107183412	107183739	-	+	4	0	0	0	9	(---e)	6	-	106936629	106936626	GCC	null	6	-	107183527	107183524	93	246898	0	0	0	1	e	na	103556630	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	e	red	LATE
352	6	107345676	107345984	6	111673977	111673977	+	-	2	69	38	62	186	(acde)	6	+	107345763	107345766	TGA	null	6	+	111673885	111673888	70	4328122	1	1	1	1	acde	na	103592703	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
354	6	111792855	111793273	6	111903173	111903492	+	-	2	4	5	7	21	(acde)	6	+	111792954	111792957	GGT	null	6	+	111903399	111903402	94	110445	1	1	1	1	acde	na	103592662	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
355	6	111895689	111896015	12	59134162	59134444	-	+	32	10	5	2	30	(acde)	6	-	111895920	0	null	C	12	-	59134265	0	94	NA	1	1	1	1	acde	na	103592663	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
356	6	112648070	112648403	21	25254855	25255185	+	+	32	19	10	24	51	(acde)	6	+	112648161	112648163	GT	null	21	-	25254943	25254941	92	NA	1	1	1	1	acde	na	103592707	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
357	6	113030639	113031225	21	25384644	25385008	+	+	32	4	0	2	6	(a-de)	6	+	113030735	113030736	C	null	21	-	25384775	25384774	94	NA	1	1	1	1	acde	na	103592665	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
358	6	113840764	113841024	21	24874724	24875081	+	-	32	5	6	15	21	(acde)	6	+	113840857	113840858	T	null	21	+	24874987	24874988	90	NA	1	1	1	1	acde	na	103588745	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
359	6	113944400	113944762	6	113945607	113945914	+	+	1	15	6	26	47	(acde)	6	+	113944491	113944493	CA	null	6	-	113945699	113945697	94	1208	1	1	1	1	acde	na	103592667	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
360	6	115832901	115833168	18	58100330	58100620	-	-	32	12	7	20	36	(acde)	6	-	115833076	115833074	TT	null	18	+	58100525	58100527	98	NA	1	1	1	1	acde	na	103592669	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
361	6	116843863	116844138	21	25426482	25426754	-	-	32	13	7	15	14	(acde)	6	-	116844047	116844045	CA	null	21	+	25426660	25426662	94	NA	1	1	1	1	acde	na	103592670	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
362	6	117341644	117341927	11	60589182	60589457	+	-	32	9	5	1	33	(acde)	6	+	117341737	0	null	null	11	+	60589361	0	98	NA	1	1	1	1	acde	na	103592671	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
365	6	133783186	133783441	21	41481137	41481422	+	+	32	14	3	14	23	(acde)	6	+	133783292	133783293	G	null	21	-	41481244	41481243	94	NA	1	1	1	1	acde	na	103592675	stCE00-859130	SOMATIC_VAL	ACDE	pcr.gel.electro.AndCNchange	somatic	HIGH	acde	grey	EARLY
366	6	134750756	134751132	12	58100168	58100533	-	-	32	1	2	0	8	(ac-e)	6	-	134751014	0	null	GTCTGAGAAGACCAAGACACAAACAGCTGCTCTG	12	+	58100407	0	64	NA	0	0	0	0	na	no cn change seen	103556642	NA	0	NA	bkpt.assoc.cn.change	unconfirmed	MEDIUM	ace	yellow	NA
368	6	135146203	135146611	6	135274372	135274822	+	+	1	0	0	0	7	(---e)	6	+	135146331	0	null	null	6	-	135274510	0	75	128179	0	0	0	1	e	na	103556644	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	e	red	LATE
369	6	135155542	135155828	8	101478839	101479379	-	-	32	0	0	0	6	(---e)	6	-	135155735	135155733	TG	null	8	+	101479270	101479272	95	NA	0	0	0	0	na	no cn change seen	103556645	stCE00-859160	FAIL	NA	pcr.gel.electro.AndCNchange	unconfirmed	MEDIUM	e	red	NA
370	6	135234297	135234723	6	135283342	135283864	+	+	1	0	0	0	4	(---e)	6	+	135234462	135234468	TATTTT	null	6	-	135283439	135283433	69	48977	0	0	0	0	e	no cn change seen	103556646	stCE00-859159	SOMATIC_VAL	E	pcr.gel.electro.AndCNchange	somatic	HIGH	e	red	LATE
375	7	1864053	1864485	7	2418697	2419084	+	-	2	4	1	1	9	(acde)	7	+	1864184	0	null	AC	7	+	2418988	0	100	554804	1	1	0	1	acde	na	103556649	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
376	7	30164727	30165150	7	30351331	30351493	-	+	4	6	5	1	0	(acd-)	7	-	30165055	30165054	T	null	7	-	30351430	30351429	99	186375	1	1	1	0	acd	na	103592692	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acd	na	LATE
377	7	50297474	50297911	7	50303974	50304461	-	-	8	0	0	0	5	(---e)	7	-	50297777	0	null	CTAGAAAAACCCCAAGTATTGTTAT	7	+	50304260	0	94	6483	0	0	0	1	e	na	103556650	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	e	red	LATE
378	7	54909360	54909652	8	85830031	85830321	+	-	32	14	5	5	24	(acde)	7	+	54909447	54909449	AG	null	8	+	85830228	85830230	99	NA	1	1	1	1	acde	na	103592695	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
383	7	106537587	106537928	7	115900909	115901224	+	-	2	8	4	22	39	(acde)	7	+	106537613	0	null	TAGTTTCCTATTGTAGGACATTATTAATAGATTGCTTTCAAGTTTACACAATTTTAAACCATGTTCTAATGAACATCCTTATAGATAAATG	7	+	115901128	0	98	9363515	1	1	1	1	acde	na	103592723	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
384	7	108308513	108308936	7	108443309	108443769	-	-	8	4	0	1	10	(a-de)	7	-	108308838	108308837	T	null	7	+	108443630	108443631	95	134792	1	1	1	1	acde	na	103592724	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
386	7	115596279	115596617	8	56792498	56792820	+	-	32	0	0	0	43	(---e)	7	+	115596377	0	null	null	8	+	56792722	0	99	NA	1	1	0	1	ace	na	103556656	stCE00-859157	FAIL	NA	bkpt.assoc.cn.change	somatic	HIGH	ace	yellow	LATE
388	7	119201009	119201254	X	53768682	53768959	+	+	32	0	2	5	6	(-cde)	7	+	119201112	0	null	GACAACCCCAGAATGAGAC	X	-	53768768	0	100	NA	1	1	1	1	acde	na	103556657	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
389	7	120134661	120134998	20	30212831	30213250	+	-	32	3	3	7	12	(acde)	7	+	120134754	0	null	G	20	+	30213132	0	98	NA	1	1	1	1	acde	na	103588754	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
391	7	127681399	127681828	7	128762293	128762611	+	-	2	0	0	0	12	(---e)	7	+	127681525	127681528	TAT	null	7	+	128762522	128762525	99	1080997	0	0	0	1	e	na	103556659	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	e	red	LATE
393	7	145836503	145836873	7	145837141	145837582	+	-	2	1	0	1	5	(a-de)	7	+	145836599	145836600	T	null	7	+	145837479	145837480	75	880	0	0	0	0	na	no cn change seen	103556660	NA	0	NA	bkpt.assoc.cn.change	unconfirmed	MEDIUM	ade	na	NA
394	7	151870570	151870897	7	152096687	152097007	+	-	2	6	1	8	20	(acde)	7	+	151870658	151870662	AAAT	null	7	+	152096909	152096913	98	226251	1	1	1	1	acde	na	103588755	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
396	7	159125737	159126065	7	159127367	159127688	+	+	1	5	2	7	21	(acde)	7	+	159125851	159125852	C	null	7	-	159127465	159127464	79	1614	1	1	1	1	acde	na	103592729	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
397	8	3633317	3633571	8	3710491	3710720	+	-	2	3	2	1	10	(acde)	8	+	3633416	0	null	null	8	+	3710615	0	98	77199	1	1	1	1	acde	na	103556663	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
398	8	3900711	3901043	8	3992032	3992371	+	-	2	1	0	3	12	(a-de)	8	+	3900803	0	null	G	8	+	3992279	0	74	91476	1	1	1	1	acde	na	103556664	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
399	8	11521484	11521763	15	101513632	101513968	+	-	32	1	1	2	22	(acde)	8	+	11521581	0	null	null	15	+	101513874	0	100	NA	1	1	1	1	acde	na	103556665	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
400	8	27622633	27622848	8	34881530	34881765	-	-	8	19	8	30	70	(acde)	8	-	27622762	27622759	ATC	null	8	+	34881672	34881675	94	7258910	1	1	1	1	acde	na	103592731	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
401	8	28286001	28286481	8	28375867	28376405	+	-	2	0	0	5	0	(--d-)	8	+	28286101	0	null	AAAGTGGACTGAA	8	+	28376307	0	99	90206	0	0	1	0	d	na	103588758	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	d	purple	LATE
402	8	29488952	29489296	8	36691216	36691592	+	+	1	1	2	2	7	(acde)	8	+	29489044	29489045	A	null	8	-	36691310	36691309	100	7202266	1	1	1	1	acde	na	103556667	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
403	8	30010922	30011245	8	30228430	30228676	+	+	1	24	9	21	44	(acde)	8	+	30011012	30011017	AGAAA	null	8	-	30228521	30228516	98	217509	1	1	1	1	acde	na	103592733	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
404	8	30011723	30012047	15	99045604	99045822	-	-	32	19	9	13	59	(acde)	8	-	30011950	30011949	C	null	15	+	99045728	99045729	95	NA	1	1	1	1	acde	na	103592734	stCE00-859110	SOMATIC_VAL	ADE	pcr.gel.electro.AndCNchange	somatic	HIGH	acde	grey	EARLY
405	8	30015870	30016231	15	99045586	99045888	+	+	32	14	7	6	46	(acde)	8	+	30015960	30015961	C	null	15	-	99045684	99045683	98	NA	1	1	1	1	acde	na	103592735	stCE00-858894	SOMATIC_VAL	AE	pcr.gel.electro.AndCNchange	somatic	HIGH	acde	grey	EARLY
406	8	30050012	30050291	15	99036678	99037015	-	-	32	20	4	4	41	(acde)	8	-	30050197	30050196	T	null	15	+	99036919	99036920	77	NA	1	1	1	1	acde	na	103592736	stCE00-859109	SOMATIC_VAL	ACDE	pcr.gel.electro.AndCNchange	somatic	HIGH	acde	grey	EARLY
407	8	35283704	35284156	20	30659038	30659393	-	-	32	2	3	0	9	(ac-e)	8	-	35284031	0	null	null	20	+	30659292	0	100	NA	1	1	1	1	acde	na	103556722	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
408	8	37779471	37779796	8	37782217	37782592	+	+	1	1	4	1	13	(acde)	8	+	37779573	37779576	CAA	null	8	-	37782321	37782318	100	2748	1	1	1	1	acde	na	103556723	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
409	8	37915588	37915950	17	14400992	14401355	+	+	32	4	4	0	11	(ac-e)	8	+	37915681	37915682	T	null	17	-	14401110	14401109	99	NA	1	1	0	1	ace	na	103592737	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	ace	yellow	LATE
411	8	37935149	37935572	8	37985783	37986155	+	-	2	2	1	1	11	(acde)	8	+	37935246	37935252	CTGGCC	null	8	+	37986029	37986035	98	50783	1	1	0	1	ace	na	103556726	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	ace	yellow	LATE
412	8	37987379	37987729	20	12953026	12953442	-	-	32	0	3	1	11	(-cde)	8	-	37987626	37987625	G	null	20	+	12953286	12953287	94	NA	1	1	1	1	acde	na	103556727	stCE00-859156	SOMATIC_VAL	ACDE	pcr.gel.electro.AndCNchange	somatic	HIGH	acde	grey	EARLY
413	8	38114562	38114892	8	38133283	38133640	-	-	8	2	5	4	24	(acde)	8	-	38114801	38114800	A	null	8	+	38133538	38133539	100	18737	1	1	1	1	acde	na	103588763	stCE00-859129	SOMATIC_VAL	CDE	pcr.gel.electro.AndCNchange	somatic	HIGH	acde	grey	EARLY
414	8	38437159	38437396	8	38438861	38439198	+	+	1	0	6	7	16	(-cde)	8	+	38437248	38437249	C	null	8	-	38438961	38438960	97	1713	1	1	1	1	acde	na	103588764	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
415	8	38540131	38540537	8	47523267	47523593	-	+	4	2	0	1	10	(a-de)	8	-	38540441	38540438	TTC	null	8	-	47523372	47523369	100	8982931	0	0	0	1	e	na	103556730	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	e	red	LATE
416	8	38790600	38790850	11	114917297	114917676	+	-	32	8	4	2	12	(acde)	8	+	38790716	0	null	null	11	+	114917583	0	93	NA	1	1	1	1	acde	na	103592738	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
417	8	39664789	39665130	15	100045065	100045391	+	+	32	7	6	2	15	(acde)	8	+	39664880	39664881	C	null	15	-	100045153	100045152	94	NA	1	1	0	1	ace	na	103592740	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	ace	yellow	LATE
418	8	40345756	40346124	8	40393022	40393389	+	+	1	7	0	13	0	(a-d-)	8	+	40345847	40345848	C	null	8	-	40393114	40393113	99	47267	1	1	1	0	acd	na	103592741	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acd	na	LATE
420	8	43088531	43088961	9	83369709	83370287	-	-	32	2	3	3	5	(acde)	8	-	43088810	0	null	null	9	+	83370191	0	94	NA	1	1	1	1	acde	na	103592793	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
419	8	43088457	43088906	9	83546944	83547397	-	-	32	3	0	4	9	(a-de)	8	-	43088810	0	null	TATCACCATGGGTCCTGTGTTTTAATTGCCACTGCATTTCTAGGACTTAGCAGTAAGTATCTAGATCAAACAGGCAATCAGTGAACGCTGAATAAAACAGATGTCAATAGATTTGCAAGGTAAAGAGCTAGGAAAAACCAGGATATTT	9	+	83547289	0	90	NA	1	1	1	1	acde	na	103592793	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
421	8	43112660	43112984	8	43346271	43346555	+	-	2	8	5	13	17	(acde)	8	+	43112750	0	null	null	8	+	43346434	0	100	233684	1	1	1	1	acde	na	103592742	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
422	8	48235170	48235596	X	115759646	115759931	+	-	32	1	1	0	6	(ac-e)	8	+	48235269	0	null	CAAGAGA	X	+	115759829	0	98	NA	0	0	0	0	na	no cn change seen	103556736	NA	0	NA	bkpt.assoc.cn.change	unconfirmed	MEDIUM	ace	yellow	NA
423	8	50869566	50869859	20	29854924	29855190	-	-	32	2	0	1	7	(a-de)	8	-	50869727	50869725	CA	null	20	+	29855085	29855087	100	NA	0	0	0	0	na	no cn change seen	103556737	NA	0	NA	bkpt.assoc.cn.change	unconfirmed	MEDIUM	ade	na	NA
424	8	51958006	51958273	8	53162044	53162388	-	-	8	13	5	17	20	(acde)	8	-	51958178	51958177	T	null	8	+	53162292	53162293	95	1204114	1	1	1	1	acde	na	103592743	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
425	8	52078657	52079081	14	22900614	22900996	+	+	32	4	2	0	4	(ac-e)	8	+	52078745	52078746	T	null	14	-	22900772	22900771	74	NA	1	1	1	1	acde	na	103592744	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
426	8	52140286	52140622	9	83369945	83370194	+	-	32	15	12	16	28	(acde)	8	+	52140382	52140383	A	null	9	+	83370101	83370102	100	NA	1	1	1	1	acde	na	103592745	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
428	8	53525074	53525381	12	64485166	64485503	+	-	32	2	0	3	8	(a-de)	8	+	53525172	0	null	TAATGTACCTTCACGAATGTTTCC	12	+	64485409	0	95	NA	1	1	1	1	acde	na	103556742	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
429	8	53647302	53647598	8	53649601	53649881	+	+	1	4	4	1	12	(acde)	8	+	53647385	53647391	GCATTC	null	8	-	53649710	53649704	97	2325	1	1	1	1	acde	na	103592798	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
430	8	59423549	59424015	8	60180515	60181035	+	+	1	0	0	0	6	(---e)	8	+	59423686	59423688	CT	null	8	-	60180631	60180629	93	756945	0	0	0	0	na	no cn change seen	103556744	NA	0	NA	bkpt.assoc.cn.change	unconfirmed	MEDIUM	e	red	NA
432	8	60180259	60180725	8	60184595	60184970	-	-	8	0	0	0	9	(---e)	8	-	60180623	60180622	C	null	8	+	60184835	60184836	99	4212	0	0	0	0	na	no cn change seen	103556746	NA	0	NA	bkpt.assoc.cn.change	unconfirmed	MEDIUM	e	red	NA
433	8	77075858	77076457	8	77083450	77083998	+	-	2	4	0	0	0	(a---)	8	+	77075965	77075970	AAAAA	null	8	+	77083749	77083754	95	7784	0	0	0	0	na	no cn change seen	103592751	NA	0	NA	bkpt.assoc.cn.change	unconfirmed	MEDIUM	a	green	NA
434	8	78253621	78253978	8	78256404	78256739	+	-	2	3	1	0	10	(ac-e)	8	+	78253719	78253722	TTA	null	8	+	78256615	78256618	100	2896	1	1	1	1	acde	na	103556747	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
435	8	86953488	86953889	8	87023183	87023522	-	-	8	5	1	2	13	(acde)	8	-	86953798	86953796	AA	null	8	+	87023413	87023415	100	69615	1	1	1	1	acde	na	103592752	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
436	8	87169507	87169998	8	87173833	87174199	+	+	1	2	2	1	9	(acde)	8	+	87169592	0	null	TATTTATATAATTAAATAAATATATATATATATATAAAATTAGCCAGGCATGGTGCACCTGTAGTCCTAGCTACTGAGGAGGCTGA	8	-	87173842	0	93	4250	1	1	1	1	acde	na	103592805	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
438	8	116969454	116969807	8	117869513	117869831	-	+	4	0	0	0	12	(---e)	8	-	116969717	116969716	G	null	8	-	117869614	117869613	97	899897	0	0	0	1	e	na	103556750	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	e	red	LATE
440	8	136625012	136625132	8	136846718	136846979	+	-	2	6	5	10	9	(acde)	8	+	136625096	136625097	A	null	8	+	136846891	136846892	84	221795	1	1	1	1	acde	na	103592762	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
442	8	140798694	140799188	8	141324140	141324606	+	-	2	4	1	1	0	(acd-)	8	+	140798820	0	null	TAATAATTG	8	+	141324462	0	100	525642	1	1	1	0	acd	na	103592764	stCE00-858893	SOMATIC_VAL	ACD	pcr.gel.electro.AndCNchange	somatic	HIGH	acd	na	LATE
443	9	1750801	1751078	9	1874165	1874454	+	-	2	8	5	3	36	(acde)	9	+	1750885	1750893	AGCCTCAG	null	9	+	1874346	1874354	98	123461	1	1	1	1	acde	na	103592766	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
444	9	10865428	10865902	9	10886083	10886643	+	-	2	0	0	5	0	(--d-)	9	+	10865592	10865596	CACA	null	9	+	10886490	10886494	80	20898	0	0	1	0	d	na	103589021	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	d	purple	LATE
445	9	21996801	21997291	9	22041701	22042258	+	-	2	0	0	5	0	(--d-)	9	+	21996904	21996910	AGGCAC	null	9	+	22042126	22042132	98	45222	0	0	1	0	d	na	103589022	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	d	purple	LATE
447	9	82127392	82127682	19	32748664	32748983	-	+	32	5	9	3	16	(acde)	9	-	82127584	82127583	T	null	19	-	32748758	32748757	100	NA	1	1	1	1	acde	na	103592780	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
448	9	82458365	82458786	10	43549718	43550219	+	-	32	2	3	1	11	(acde)	9	+	82458469	0	null	GAAGAATGGGGGAGCTACTGACATGTCGTGAGTAGAGACCAAGGACGTTGCAGTACATAGTACAATGTACAAGACACCAC	10	+	43550123	0	99	NA	1	1	1	1	acde	na	103556756	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
449	9	83370246	83370847	9	83547003	83547465	+	-	2	4	4	4	2	(acde)	9	+	83370338	83370340	TG	null	9	+	83547289	83547291	100	176951	1	1	1	1	acde	na	103592781	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
451	9	95822554	95822867	20	36315690	36316113	+	-	32	1	3	3	8	(acde)	9	+	95822654	95822656	AC	null	20	+	36316019	36316021	95	NA	1	1	0	1	acde	na	103556757	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
452	9	96724885	96725175	9	99375050	99375505	+	+	1	2	5	5	8	(acde)	9	+	96724978	96724980	CC	null	9	-	99375166	99375164	95	2650188	1	1	1	1	acde	na	103592835	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
453	9	97496487	97496860	9	101267722	101268099	+	-	2	5	0	0	12	(a--e)	9	+	97496586	0	null	null	9	+	101267954	0	97	3771368	1	1	1	1	acde	na	103556759	stCE00-859184	SOMATIC_VAL	ACDE	pcr.gel.electro.AndCNchange	somatic	HIGH	acde	grey	EARLY
454	9	99561462	99561916	9	104094309	104094558	-	+	4	3	1	5	5	(acde)	9	-	99561823	99561821	AT	null	9	-	104094410	104094408	100	4532587	1	1	1	1	acde	na	103589026	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
455	9	108077134	108077474	9	109318407	109318821	+	-	2	0	0	0	16	(---e)	9	+	108077265	0	null	null	9	+	109318722	0	95	1241457	0	0	0	1	e	na	103556761	stCE00-859183	SOMATIC_VAL	E	pcr.gel.electro.AndCNchange	somatic	HIGH	e	red	LATE
456	9	109928755	109929026	9	110064823	110065185	+	-	2	3	0	2	11	(a-de)	9	+	109928870	109928873	CGC	null	9	+	110065081	110065084	100	136211	1	1	1	1	acde	na	103556762	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
458	10	4300621	4300976	21	22385133	22385474	-	-	32	0	0	16	0	(--d-)	10	-	4300882	4300880	AA	null	21	+	22385367	22385369	97	NA	0	0	1	0	d	na	103589027	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	d	purple	LATE
460	10	44026948	44027274	10	52219948	52220271	+	-	2	2	1	5	9	(acde)	10	+	44027043	0	null	null	10	+	52220176	0	98	8193133	1	1	1	1	acde	na	103589028	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
461	10	48546796	48547181	18	70594848	70595192	-	-	32	0	0	2	14	(--de)	10	-	48547081	48547078	CCA	null	18	+	70595083	70595086	99	NA	0	0	0	1	e	na	103556764	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	e	red	LATE
463	10	53413853	53414125	12	66862702	66862956	-	+	32	48	30	65	137	(acde)	10	-	53414039	53414037	TT	null	12	-	66862796	66862794	70	NA	1	1	1	1	acde	na	103592807	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
464	10	53439911	53440178	10	53441034	53441250	+	+	1	45	34	62	134	(acde)	10	+	53440001	53440002	C	null	10	-	53441127	53441126	94	1126	1	1	1	1	acde	na	103592809	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
465	10	81285773	81286305	10	81297495	81298102	-	+	4	0	0	0	4	(---e)	10	-	81286157	81286152	GCTTT	null	10	-	81297627	81297622	97	11470	0	0	0	1	e	na	103556768	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	e	red	LATE
466	10	112992934	112993304	10	112995820	112996386	+	+	1	2	1	2	9	(acde)	10	+	112993096	112993099	CCT	null	10	-	112995924	112995921	94	2828	1	1	1	1	acde	na	103556769	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
467	10	115269073	115269398	12	61882016	61882298	-	-	32	9	7	9	19	(acde)	10	-	115269300	115269298	GA	null	12	+	61882206	61882208	99	NA	1	1	1	1	acde	na	103592818	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
468	10	115373825	115374146	10	128828098	128828376	+	+	1	7	2	6	19	(acde)	10	+	115373921	115373922	A	null	10	-	128828191	128828190	98	13454270	1	1	1	1	acde	na	103592819	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
469	10	120158928	120159239	10	129714661	129714941	-	-	8	8	3	7	22	(acde)	10	-	120159140	120159138	TG	null	10	+	129714823	129714825	94	9555683	1	1	1	1	acde	na	103592820	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
470	10	121125147	121125542	10	121162682	121163029	+	-	2	8	3	0	7	(ac-e)	10	+	121125256	0	null	GGATTAC	10	+	121162938	0	97	37682	1	1	1	1	acde	na	103556823	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
471	10	123471990	123472395	10	123476372	123476716	+	-	2	3	0	2	7	(a-de)	10	+	123472100	0	null	GGAGGTGA	10	+	123476612	0	99	4512	0	0	0	0	na	no cn change seen	103556824	NA	0	NA	bkpt.assoc.cn.change	unconfirmed	MEDIUM	ade	na	NA
472	10	125782886	125783250	12	46932391	46932731	+	-	32	4	2	8	21	(acde)	10	+	125783005	0	null	null	12	+	46932635	0	94	NA	1	1	1	1	acde	na	103592822	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
474	10	127261097	127261403	12	61804833	61805145	-	+	32	5	4	11	16	(acde)	10	-	127261309	0	null	null	12	-	61804928	0	100	NA	1	1	1	1	acde	na	103592823	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
475	10	130478383	130478730	12	69566069	69566358	+	+	32	9	0	5	21	(a-de)	10	+	130478471	130478472	T	null	12	-	69566159	69566158	97	NA	1	1	1	1	acde	na	103592824	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
479	11	56919186	56919428	18	60628979	60629258	-	+	32	35	17	29	76	(acde)	11	-	56919336	56919335	C	null	18	-	60629070	60629069	95	NA	1	1	1	1	acde	na	103592836	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
480	11	56975310	56975857	12	57947119	57947657	+	+	32	4	1	0	0	(ac--)	11	+	56975426	56975428	CC	null	12	-	57947223	57947221	70	NA	1	1	1	1	acde	na	103592837	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
481	11	57455352	57455643	11	58900093	58900192	-	-	8	25	13	32	69	(acde)	11	-	57455551	57455550	C	null	11	+	58900094	58900095	95	1444543	1	1	1	1	acde	na	103592838	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
482	11	62211146	62211426	11	91358295	91358614	+	-	2	6	2	7	18	(acde)	11	+	62211241	62211242	T	null	11	+	91358521	91358522	98	29147280	1	1	1	1	acde	na	103592839	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
483	11	63441731	63442070	11	64785549	64785909	+	-	2	5	0	0	17	(a--e)	11	+	63441833	63441835	CA	null	11	+	64785804	64785806	100	1343971	1	1	1	1	acde	na	103592840	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
485	11	67937115	67937471	11	82027804	82028148	-	+	4	8	6	11	25	(acde)	11	-	67937385	67937382	TGA	null	11	-	82027897	82027894	100	14090512	1	1	1	1	acde	na	103592842	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
486	11	67945215	67945520	11	68049796	68050118	-	+	4	3	4	9	14	(acde)	11	-	67945415	67945413	TG	null	11	-	68049929	68049927	100	104514	1	1	1	1	acde	na	103589041	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
487	11	68121661	68121922	12	65094007	65094263	+	+	32	16	5	5	26	(acde)	11	+	68121759	68121761	CT	null	12	-	65094098	65094096	98	NA	1	1	1	1	acde	na	103592843	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
488	11	76434629	76434905	21	25956277	25956586	+	-	32	5	2	9	18	(acde)	11	+	76434722	76434723	C	null	21	+	25956486	25956487	98	NA	1	1	1	1	acde	na	103556838	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
489	11	76545306	76545625	21	25667282	25667655	-	+	32	13	8	10	37	(acde)	11	-	76545522	76545520	CT	null	21	-	25667384	25667382	94	NA	1	1	1	1	acde	na	103592845	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
490	11	76729303	76729489	11	78581021	78581370	-	+	4	16	10	15	54	(acde)	11	-	76729396	76729393	CAA	null	11	-	78581116	78581113	94	1851720	1	1	1	1	acde	na	103592846	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
491	11	78032574	78032903	11	131869310	131869599	-	+	4	19	18	25	64	(acde)	11	-	78032860	0	null	GTGTTCCATTGGTCTACATGTGTGTTTTTGTAACAATACCATGCTGTGTTGG	11	-	131869405	0	98	53836545	1	1	1	1	acde	na	103592847	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
492	11	78840407	78840952	19	31133893	31134272	-	-	32	0	1	3	7	(-cde)	11	-	78840851	0	null	AGACAGAGCCTT	19	+	31134154	0	100	NA	0	0	0	1	e	na	103556842	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	e	red	LATE
493	11	79628931	79629187	11	80268548	80268842	+	-	2	9	1	5	25	(acde)	11	+	79629020	79629023	CAG	null	11	+	80268750	80268753	100	639730	1	1	1	1	acde	na	103592848	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
494	11	80440644	80440994	11	81893262	81893550	+	-	2	0	0	1	4	(--de)	11	+	80440750	80440752	TA	null	11	+	81893451	81893453	96	1452701	1	1	1	1	acde	na	103556844	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
495	11	81469072	81469399	11	81483761	81484054	+	-	2	0	3	3	12	(-cde)	11	+	81469181	81469182	T	null	11	+	81483958	81483959	100	14777	1	1	1	1	acde	na	103592914	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
497	11	87117327	87117627	11	115550458	115551010	-	+	4	8	4	4	28	(acde)	11	-	87117510	0	null	null	11	-	115550552	0	100	28433042	1	1	1	1	acde	na	103589048	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
498	11	87585518	87585849	11	87587844	87588146	+	-	2	2	5	7	22	(acde)	11	+	87585614	0	null	CT	11	+	87588038	0	99	2424	1	1	1	1	acde	na	103592918	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
499	11	92255501	92255817	11	92257521	92257894	+	-	2	0	0	0	9	(---e)	11	+	92255595	0	null	TCTATTTTGG	11	+	92257785	0	100	2190	0	0	0	0	na	no cn change seen	103556849	NA	0	NA	bkpt.assoc.cn.change	unconfirmed	MEDIUM	e	red	NA
500	11	92745509	92745823	18	63662479	63662823	-	+	32	5	3	6	23	(acde)	11	-	92745730	92745728	TT	null	18	-	63662573	63662571	95	NA	1	1	1	1	acde	na	103592851	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
501	11	94050240	94050532	12	58502313	58502558	+	+	32	14	11	23	53	(acde)	11	+	94050333	0	null	null	12	-	58502404	0	100	NA	1	1	1	1	acde	na	103592921	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
502	11	100659735	100659766	18	58131538	58131832	-	-	32	24	14	21	68	(acde)	11	-	100659672	0	null	null	18	+	58131740	0	100	NA	1	1	1	1	acde	na	103592854	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
505	11	107082502	107082913	11	107701737	107702061	+	+	1	8	4	5	15	(acde)	11	+	107082591	107082593	GG	null	11	-	107701852	107701850	99	619261	1	1	1	1	acde	na	103592855	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
507	11	112302874	112303218	11	133462582	133463005	-	+	4	0	0	0	11	(---e)	11	-	112303118	112303116	GA	null	11	-	133462686	133462684	100	21159568	0	0	0	1	e	na	103556855	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	e	red	LATE
508	11	115549921	115550476	11	115550415	115550696	-	-	8	13	6	8	32	(acde)	11	-	115550379	0	null	null	11	+	115550580	0	94	201	1	1	1	1	acde	na	103592857	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
509	11	115550395	115550670	11	131869054	131869317	+	-	2	13	5	15	26	(acde)	11	+	115550485	115550486	T	null	11	+	131869220	131869221	99	16318735	1	1	1	1	acde	na	103592858	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
510	11	115555872	115556117	11	131858961	131859210	+	-	2	13	8	25	60	(acde)	11	+	115555962	115555963	C	null	11	+	131859118	131859119	96	16303156	1	1	1	1	acde	na	103592859	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
511	11	124079264	124079603	11	124102576	124102838	+	-	2	5	5	13	32	(acde)	11	+	124079354	124079355	C	null	11	+	124102743	124102744	97	23389	1	1	1	1	acde	na	103592860	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
512	11	124103586	124103879	11	124105188	124105467	+	-	2	11	11	12	20	(acde)	11	+	124103682	124103683	T	null	11	+	124105373	124105374	85	1691	0	0	0	0	na	no cn change seen	103592861	NA	0	NA	bkpt.assoc.cn.change	unconfirmed	MEDIUM	acde	grey	NA
513	11	133287471	133287848	18	60343394	60343888	-	+	32	0	0	0	4	(---e)	11	-	133287751	0	null	TTCTTGTGACTCAGTGCACAAGAACCATTTTCCAC	18	-	60343494	0	94	NA	0	0	0	1	e	na	103556861	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	e	red	LATE
518	12	38471397	38471721	12	40555706	40556088	+	-	2	3	2	5	9	(acde)	12	+	38471498	38471503	TCCTG	null	12	+	40555994	40555999	99	2084496	1	1	1	1	acde	na	103592947	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
520	12	39695321	39695625	12	39696632	39697211	+	+	1	0	1	1	6	(-cde)	12	+	39695412	39695413	G	null	12	-	39696734	39696733	95	1322	0	0	0	1	e	na	103556863	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	e	red	LATE
522	12	40690153	40690475	12	40690754	40691216	-	-	8	1	2	3	10	(acde)	12	-	40690364	0	null	AG	12	+	40691111	0	95	747	1	1	1	1	acde	na	103592949	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
523	12	43084029	43084466	14	41924791	41925180	+	+	32	3	2	4	3	(acde)	12	+	43084140	0	null	GAGGAG	14	-	41924899	0	96	NA	1	1	1	1	acde	na	103589060	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
524	12	45612622	45613080	12	65744326	65744877	+	-	2	1	0	0	4	(a--e)	12	+	45612724	0	null	TTACTTTCTGGTCCAGATGAAAACAAATATTCTTCCATTAGATTTCAAAATG	12	+	65744719	0	69	20131995	1	1	1	1	acde	na	103556866	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
525	12	47019288	47019621	12	47021609	47021902	+	+	1	5	5	6	21	(acde)	12	+	47019384	47019388	AGGT	null	12	-	47021708	47021704	100	2324	1	1	1	1	acde	na	103592868	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
526	12	47254145	47254572	14	29580815	29581176	-	-	32	3	1	3	10	(acde)	12	-	47254411	0	null	ATTATTTCCAAATAAGGCCTATTTTA	14	+	29581101	0	96	NA	1	1	1	1	acde	na	103556868	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
527	12	49054622	49055006	12	49194804	49195182	-	+	4	2	2	0	11	(ac-e)	12	-	49054905	0	null	GCA	12	-	49194905	0	97	140000	1	1	0	1	ace	na	103556869	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	ace	yellow	LATE
528	12	57777441	57777704	14	29929113	29929342	-	-	32	126	66	121	318	(acde)	12	-	57777613	57777612	G	null	14	+	29929248	29929249	99	NA	1	1	1	1	acde	na	103592869	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
532	12	58025320	58025661	X	141744520	141744779	+	-	32	5	4	12	32	(acde)	12	+	58025415	0	null	null	X	+	141744681	0	95	NA	1	1	1	1	acde	na	103592870	stCE00-859128	FAIL	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
535	12	58312334	58312840	12	112968224	112968728	+	+	1	0	0	0	6	(---e)	12	+	58312434	0	null	null	12	-	112968420	0	80	54655986	0	0	0	0	na	no cn change seen	103556925	NA	0	NA	bkpt.assoc.cn.change	unconfirmed	MEDIUM	e	red	NA
534	12	58312280	58312538	12	112968089	112968515	-	-	8	0	0	0	8	(---e)	12	-	58312444	0	null	null	12	+	112968417	0	93	54655973	0	0	0	0	na	no cn change seen	103556924	NA	0	NA	bkpt.assoc.cn.change	unconfirmed	MEDIUM	e	red	NA
536	12	58354347	58354608	18	67533220	67533505	+	+	32	18	12	23	24	(acde)	12	+	58354437	0	null	GTC	18	-	67533315	0	97	NA	1	1	1	1	acde	na	103592872	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
537	12	58370352	58370645	21	25743729	25743994	-	+	32	7	6	14	48	(acde)	12	-	58370552	58370551	G	null	21	-	25743822	25743821	94	NA	0	0	0	0	na	no cn change seen	103592873	NA	0	NA	bkpt.assoc.cn.change	unconfirmed	MEDIUM	acde	grey	NA
538	12	58505658	58505934	15	96857472	96857862	+	-	32	0	0	1	10	(--de)	12	+	58505742	58505743	T	null	15	+	96857751	96857752	99	NA	0	0	0	1	e	na	103556928	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	e	red	LATE
540	12	59115524	59115961	X	144094802	144095252	-	+	32	0	4	2	6	(-cde)	12	-	59115842	59115841	A	null	X	-	144094922	144094921	94	NA	1	1	1	1	acde	na	103556929	stCE00-859155	SOMATIC_VAL	DE	pcr.gel.electro.AndCNchange	somatic	HIGH	acde	grey	EARLY
544	12	59680371	59680636	12	64259820	64260030	+	-	2	74	32	100	266	(acde)	12	+	59680462	0	null	null	12	+	64259937	0	98	4579475	1	1	1	1	acde	na	103592875	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
545	12	62856859	62857282	19	5198093	5198448	-	-	32	0	2	0	5	(-c-e)	12	-	62857173	62857171	TC	null	19	+	5198345	5198347	98	NA	1	1	1	1	acde	na	103556932	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
548	12	64818482	64818757	X	144978660	144978920	-	-	32	12	8	9	45	(acde)	12	-	64818664	64818663	A	null	X	+	144978820	144978821	99	NA	1	1	1	1	acde	na	103592879	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
549	12	65019145	65019463	21	25490696	25490987	-	-	32	12	8	14	38	(acde)	12	-	65019369	65019366	AGA	null	21	+	25490893	25490896	91	NA	1	1	1	1	acde	na	103592880	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
550	12	65050629	65050905	21	25640338	25640568	-	-	32	13	1	6	25	(acde)	12	-	65050811	65050810	C	null	21	+	25640474	25640475	94	NA	1	1	1	1	acde	na	103592881	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
551	12	65162189	65162450	21	25303617	25303919	+	-	32	22	12	20	87	(acde)	12	+	65162280	65162282	AA	null	21	+	25303824	25303826	69	NA	1	1	1	1	acde	na	103592971	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
553	12	65557789	65558047	18	63834985	63835251	-	-	32	22	15	34	109	(acde)	12	-	65557958	65557956	TT	null	18	+	63835159	63835161	94	NA	1	1	1	1	acde	na	103592883	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
554	12	65898581	65898971	18	59510377	59510692	+	-	32	9	1	4	19	(acde)	12	+	65898695	65898697	AA	null	18	+	59510598	59510600	89	NA	1	1	1	1	acde	na	103589124	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
556	12	66839436	66839682	21	24622710	24622977	+	-	32	36	15	44	88	(acde)	12	+	66839524	66839525	G	null	21	+	24622883	24622884	95	NA	1	1	1	1	acde	na	103592888	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
557	12	67379846	67380427	12	72283294	72283643	-	-	8	0	0	0	7	(---e)	12	-	67380227	0	null	ATTT	12	+	72283553	0	98	4903326	1	1	1	1	acde	na	103556941	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
558	12	67425411	67425696	19	58866596	58866913	+	-	32	2	4	3	10	(acde)	12	+	67425476	0	null	GTTTTATTCCTTCCTCTTTTTTATTTG	19	+	58866812	0	100	NA	1	1	1	1	acde	na	103556942	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
559	12	73634860	73635363	12	74057203	74057608	+	-	2	2	0	1	8	(a-de)	12	+	73634990	0	null	ATATGCCAAGTAAACCATACTTGGCATA	12	+	74057478	0	97	422488	1	1	1	1	acde	na	103556943	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
563	12	116577320	116577735	19	37092365	37092817	+	+	32	0	0	0	4	(---e)	12	+	116577428	116577430	AT	null	19	-	37092457	37092455	75	NA	0	0	0	1	e	na	103556945	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	e	red	LATE
569	12	131205194	131205551	12	131342586	131342908	+	-	2	0	0	0	15	(---e)	12	+	131205295	131205296	T	null	12	+	131342787	131342788	99	137492	0	0	0	1	e	na	103556948	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	e	red	LATE
571	12	131952054	131952570	12	132215070	132215529	-	-	8	0	0	0	5	(---e)	12	-	131952444	131952441	TGT	null	12	+	132215390	132215393	100	262946	0	0	0	0	na	no cn change seen	103556949	NA	0	NA	bkpt.assoc.cn.change	unconfirmed	MEDIUM	e	red	NA
573	12	133083128	133083462	12	133085307	133085678	+	+	1	0	0	0	7	(---e)	12	+	133083231	133083233	CC	null	12	-	133085418	133085416	99	2187	0	0	0	1	e	na	103556951	stCE00-859154	FAIL	NA	bkpt.assoc.cn.change	somatic	HIGH	e	red	LATE
574	13	20063423	20063738	15	94116967	94117026	-	+	32	8	2	4	8	(acde)	13	-	20063648	20063647	T	null	15	-	94117064	94117063	99	NA	1	1	1	1	acde	na	103589129	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
575	13	20448150	20448519	15	94174610	94174984	+	-	32	5	4	7	14	(acde)	13	+	20448245	20448247	CT	null	15	+	94174884	94174886	98	NA	1	1	1	1	acde	na	103592902	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
576	13	28826756	28827043	18	25158643	25158961	-	-	32	8	5	4	15	(acde)	13	-	28826936	0	null	TACTT	18	+	25158866	0	96	NA	1	1	1	1	acde	na	103592904	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
577	13	31069723	31070079	13	32051667	32052095	+	-	2	3	1	1	5	(acde)	13	+	31069833	31069836	CTC	null	13	+	32051981	32051984	100	982148	1	1	1	1	acde	na	103556955	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
579	13	96862322	96862585	15	96175402	96175732	-	-	32	19	4	5	31	(acde)	13	-	96862491	96862488	TTA	null	15	+	96175641	96175644	98	NA	1	1	1	1	acde	na	103592925	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
580	13	97095306	97095551	16	24518312	24518613	-	-	32	10	3	4	20	(acde)	13	-	97095455	0	null	GAA	16	+	24518512	0	98	NA	1	1	1	1	acde	na	103592926	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
581	13	97304913	97305171	13	97305351	97305633	+	+	1	15	10	12	32	(acde)	13	+	97305003	97305005	TC	null	13	-	97305452	97305450	90	449	1	1	1	1	acde	na	103592928	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
583	14	29664749	29665067	14	29665912	29666210	-	-	8	4	1	0	28	(ac-e)	14	-	29664955	29664951	ATTT	null	14	+	29666115	29666119	95	1160	1	1	0	1	ace	na	103592934	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	ace	yellow	LATE
584	14	29974771	29975009	14	30574783	30574991	+	+	1	130	62	117	340	(acde)	14	+	29974863	0	null	T	14	-	30574875	0	99	600012	1	1	1	1	acde	na	103592935	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
585	14	30535260	30535492	21	26063358	26063578	-	+	32	121	66	139	286	(acde)	14	-	30535401	0	null	AACCTCCAACTA	21	-	26063439	0	100	NA	1	1	1	1	acde	na	103592937	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
586	14	31055528	31056005	14	31057027	31057433	-	-	8	2	0	6	0	(a-d-)	14	-	31055908	31055906	AA	null	14	+	31057317	31057319	95	1409	0	0	0	0	na	no cn change seen	103589137	NA	0	NA	bkpt.assoc.cn.change	unconfirmed	MEDIUM	ad	na	NA
587	14	31382153	31382532	21	27428347	27428677	+	+	32	6	1	7	12	(acde)	14	+	31382288	31382290	TC	null	21	-	27428440	27428438	100	NA	1	1	1	1	acde	na	103592938	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
589	14	35919508	35919834	14	36010198	36010648	+	-	2	2	2	0	14	(ac-e)	14	+	35919616	0	null	A	14	+	36010554	0	98	90938	1	1	0	1	ace	na	103556963	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	ace	yellow	LATE
590	14	35975179	35975611	14	36015878	36016269	+	-	2	9	4	5	4	(acde)	14	+	35975271	35975272	G	null	14	+	36016169	36016170	100	40898	1	1	0	1	ace	na	103592939	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	ace	yellow	LATE
591	14	51365197	51365475	20	48411627	48411916	-	-	32	11	8	13	32	(acde)	14	-	51365385	0	null	null	20	+	48411827	0	99	NA	1	1	1	1	acde	na	103592942	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
592	14	51809792	51810065	14	52778053	52778334	+	-	2	10	9	14	48	(acde)	14	+	51809895	51809896	T	null	14	+	52778240	52778241	98	968345	1	1	1	1	acde	na	103589141	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
593	14	52624470	52624753	20	49508386	49508748	+	+	32	8	7	15	24	(acde)	14	+	52624560	52624562	GA	null	20	-	49508476	49508474	99	NA	1	1	1	1	acde	na	103592944	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
594	14	52732783	52733071	18	34506714	34507036	-	-	32	3	3	7	8	(acde)	14	-	52732971	0	null	null	18	+	34506940	0	92	NA	1	1	1	1	acde	na	103556968	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
595	14	82852956	82853268	14	83236017	83236380	-	+	4	0	0	0	7	(---e)	14	-	82853167	82853164	CTG	null	14	-	83236155	83236152	100	382988	0	0	0	1	e	na	103556969	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	e	red	LATE
596	15	62904961	62905358	17	16328449	16328788	-	+	32	17	5	13	48	(acde)	15	-	62905268	0	null	AAAGTTAGCTGCATCAAGAGTTCA	17	-	16328556	0	96	NA	1	1	1	1	acde	na	103592981	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
597	15	62905504	62905913	17	16326723	16326983	+	+	32	20	15	15	67	(acde)	15	+	62905592	62905595	TGC	null	17	-	16326819	16326816	98	NA	1	1	1	1	acde	na	103592982	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
598	15	67599541	67599869	15	68964786	68965101	-	+	4	0	0	5	17	(--de)	15	-	67599761	67599758	GAA	null	15	-	68964876	68964873	97	1365115	1	1	1	1	acde	na	103589146	stCE00-859153	FAIL	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
601	15	95885284	95885731	16	32098545	32099121	-	+	32	3	2	3	8	(acde)	15	-	95885638	0	null	AAATTAGCTAGTATGGTGTCATGCACTTGCAGTCCCTGCTACTCAGGAGACTGAGGTGGGAGAATCGC	16	-	32098737	0	96	NA	1	1	1	1	acde	na	103593041	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
602	15	99486994	99487498	18	49554250	49554699	+	-	32	0	0	1	4	(--de)	15	+	99487090	0	null	GCTAATTTGATCTACACCCCTGACTCTCTGAAGTATACAATCT	18	+	49554542	0	94	NA	0	0	0	0	na	no cn change seen	103557024	NA	0	NA	bkpt.assoc.cn.change	unconfirmed	MEDIUM	de	na	NA
603	15	100160975	100161267	15	100398915	100399414	-	+	4	9	1	0	0	(ac--)	15	-	100161168	0	null	null	15	-	100399026	0	99	237858	1	0	0	0	a	na	103592984	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	a	green	LATE
606	16	287725	288004	22	51177591	51177885	-	+	32	6	1	0	14	(ac-e)	16	-	287906	0	null	null	22	-	51177680	0	99	NA	1	1	1	1	acde	na	103592986	stCE00-858892	FAIL	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
607	16	11930904	11931337	16	12065582	12066104	+	-	2	0	0	9	0	(--d-)	16	+	11930998	0	null	GACATGCACTAATGACACTAATGACATTAATGACATGCAACACTAGT	16	+	12065984	0	99	134986	0	0	1	0	d	na	103589148	stCE00-859127	SOMATIC_VAL	D	pcr.gel.electro.AndCNchange	somatic	HIGH	d	purple	LATE
609	16	12220766	12221176	16	12841267	12841588	-	+	4	0	0	15	0	(--d-)	16	-	12221058	12221055	TGC	null	16	-	12841367	12841364	98	620309	0	0	1	0	d	na	103589150	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	d	purple	LATE
614	16	17579582	17579933	16	17581422	17581809	+	+	1	0	0	4	0	(--d-)	16	+	17579682	17579684	CT	null	16	-	17581589	17581587	89	1907	0	0	1	0	d	na	103589152	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	d	purple	LATE
615	16	17708867	17709206	16	17714152	17714667	+	-	2	0	0	5	0	(--d-)	16	+	17708993	0	null	null	16	+	17714535	0	71	5542	0	0	0	0	na	no cn change seen	103589153	NA	0	NA	bkpt.assoc.cn.change	unconfirmed	MEDIUM	d	na	NA
616	16	20404426	20404932	16	20729582	20730120	+	+	1	0	0	9	0	(--d-)	16	+	20404544	20404545	G	null	16	-	20729675	20729674	85	325131	0	0	1	0	d	na	103589154	stCE00-859126	FAIL	NA	bkpt.assoc.cn.change	somatic	HIGH	d	purple	LATE
617	16	20888723	20889186	16	20891501	20891890	+	+	1	0	0	7	0	(--d-)	16	+	20888818	20888820	CC	null	16	-	20891606	20891604	99	2788	0	0	1	0	d	na	103589155	stCE00-859125	SOMATIC_VAL	D	pcr.gel.electro.AndCNchange	somatic	HIGH	d	purple	LATE
618	16	23533610	23533919	16	23534853	23535142	+	+	1	0	0	24	0	(--d-)	16	+	23533708	23533713	AGTTC	null	16	-	23534948	23534943	87	1240	0	0	1	0	d	na	103589156	stCE00-859124	SOMATIC_VAL	D	pcr.gel.electro.AndCNchange	somatic	HIGH	d	purple	LATE
619	16	26453089	26453365	16	26455258	26455707	+	-	2	5	2	5	10	(acde)	16	+	26453195	26453197	TT	null	16	+	26455612	26455614	95	2417	1	1	1	1	acde	na	103592992	stCE00-859152	SOMATIC_VAL	ACDE	pcr.gel.electro.AndCNchange	somatic	HIGH	acde	grey	EARLY
620	16	27507637	27508080	21	25642893	25643089	+	-	32	0	0	10	0	(--d-)	16	+	27507749	0	null	null	21	+	25642988	0	95	NA	1	1	1	1	acde	na	103589158	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
622	16	34514117	34514498	16	34522828	34523128	-	+	4	3	1	4	9	(acde)	16	-	34514404	34514401	ACC	null	16	-	34522939	34522936	70	8535	0	0	0	1	e	na	103589160	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	e	red	LATE
623	16	65161318	65161830	16	65165272	65165722	-	+	4	1	2	3	6	(acde)	16	-	65161718	65161717	G	null	16	-	65165364	65165363	85	3646	1	1	1	1	acde	na	103557028	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
624	16	72423836	72424104	16	72842765	72843053	+	-	2	6	2	11	22	(acde)	16	+	72423925	72423930	TAAAT	null	16	+	72842955	72842960	100	419030	1	1	1	1	acde	na	103589161	stCE00-859123	SOMATIC_VAL	ACDE	pcr.gel.electro.AndCNchange	somatic	HIGH	acde	grey	EARLY
625	16	80161184	80161611	16	80279007	80279502	+	-	2	0	0	0	6	(---e)	16	+	80161337	0	null	AGCATAAATATCTTCTTTTGAGAA	16	+	80279397	0	98	118060	1	1	1	1	acde	na	103557030	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
627	17	6959172	6959461	17	72927404	72927733	-	-	8	2	4	2	11	(acde)	17	-	6959354	0	null	A	17	+	72927635	0	93	65968281	1	1	1	1	acde	na	103557032	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
628	17	10182247	10182710	17	16866145	16866577	-	-	8	1	2	2	6	(acde)	17	-	10182558	10182557	T	null	17	+	16866476	16866477	96	6683918	1	1	1	1	acde	na	103557033	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
629	17	15093889	15094230	17	15094413	15094769	-	-	8	6	3	1	28	(acde)	17	-	15094125	15094123	CT	null	17	+	15094673	15094675	89	548	1	1	1	1	acde	na	103593006	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
630	17	15147401	15147715	17	15186058	15186440	+	+	1	5	3	8	14	(acde)	17	+	15147501	15147502	A	null	17	-	15186155	15186154	96	38654	1	1	1	1	acde	na	103589162	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
632	17	16052836	16053260	17	16055613	16055963	+	+	1	0	0	2	10	(--de)	17	+	16052937	16052938	A	null	17	-	16055726	16055725	85	2789	1	1	1	1	acde	na	103557036	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
634	17	16320948	16321212	17	16321539	16321825	-	-	8	8	9	0	48	(ac-e)	17	-	16321124	16321119	GTCCT	null	17	+	16321736	16321741	94	612	1	1	1	1	acde	na	103593009	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
636	17	16332960	16333437	17	16343412	16343941	+	-	2	2	0	0	4	(a--e)	17	+	16333055	16333056	G	null	17	+	16343841	16343842	73	10786	1	1	1	1	acde	na	103557040	stCE00-859151	FAIL	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
638	17	21039419	21039802	17	21041585	21041860	-	-	8	6	2	1	10	(acde)	17	-	21039699	21039691	CCTTGTGA	null	17	+	21041768	21041776	93	2069	1	1	1	1	acde	na	103593064	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
639	17	26978685	26979041	17	26979423	26979693	+	-	2	3	6	15	20	(acde)	17	+	26978784	26978785	G	null	17	+	26979594	26979595	90	810	0	0	0	0	na	no cn change seen	103589163	NA	0	NA	bkpt.assoc.cn.change	unconfirmed	MEDIUM	acde	grey	NA
640	17	27059825	27060234	17	27068788	27069191	+	+	1	4	2	3	7	(acde)	17	+	27059928	0	null	CCCTGGATTCTGGACCCTGTTAGGCCAGAAAGAGAGTTTCAGCATCAACC	17	-	27068843	0	98	8915	1	1	1	1	acde	na	103557043	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
644	18	12349990	12350368	19	48212080	48212372	-	+	32	11	5	0	18	(ac-e)	18	-	12350269	12350264	GGAGT	null	19	-	48212178	48212173	99	NA	1	1	0	1	ace	na	103593029	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	ace	yellow	LATE
645	18	12396699	12397261	19	50168544	50168948	+	-	32	1	0	0	15	(a--e)	18	+	12396791	12396792	G	null	19	+	50168787	50168788	99	NA	1	1	0	1	ace	na	103557046	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	ace	yellow	LATE
647	18	12593934	12594241	20	42232256	42232574	-	+	32	5	1	0	12	(ac-e)	18	-	12594137	0	null	null	20	-	42232356	0	99	NA	1	1	0	1	ace	na	103557047	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	ace	yellow	LATE
649	18	21561980	21562351	22	22683003	22683391	+	+	32	0	0	4	12	(--de)	18	+	21562095	21562097	AG	null	22	-	22683110	22683108	100	NA	0	0	0	1	e	na	103557048	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	e	red	LATE
650	18	25157621	25157883	18	25159679	25159993	+	+	1	0	1	9	13	(-cde)	18	+	25157706	25157710	ATTT	null	18	-	25159788	25159784	96	2082	1	1	1	1	acde	na	103589165	stCE00-859150	SOMATIC_VAL	DE	pcr.gel.electro.AndCNchange	somatic	HIGH	acde	grey	EARLY
652	18	27114205	27114640	18	27196069	27196636	-	-	8	4	3	0	0	(ac--)	18	-	27114545	27114543	CA	null	18	+	27196484	27196486	100	81939	0	0	0	0	na	no cn change seen	103593031	NA	0	NA	bkpt.assoc.cn.change	unconfirmed	MEDIUM	ac	na	NA
654	18	49557679	49558001	18	49564611	49564865	+	+	1	0	0	7	18	(--de)	18	+	49557773	0	null	null	18	-	49564703	0	100	6930	0	0	0	0	na	no cn change seen	103589166	NA	0	NA	bkpt.assoc.cn.change	unconfirmed	MEDIUM	de	na	NA
655	18	55969814	55970185	18	56002295	56002735	+	-	2	3	0	0	8	(a--e)	18	+	55969909	0	null	null	18	+	56002617	0	99	32708	1	1	1	1	acde	na	103557051	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
657	18	58323275	58323673	22	29065260	29065790	+	-	32	2	3	0	4	(ac-e)	18	+	58323367	0	null	TGCAGGTTAGTTACATATGTATACATGTGCCATGCTGGT	22	+	29065648	0	94	NA	0	0	0	0	na	no cn change seen	103557053	NA	0	NA	bkpt.assoc.cn.change	unconfirmed	MEDIUM	ace	yellow	NA
659	18	60845064	60845509	18	61067230	61067517	-	+	4	0	0	0	10	(---e)	18	-	60845401	0	null	null	18	-	61067325	0	94	221924	0	0	0	1	e	na	103557055	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	e	red	LATE
660	18	74258760	74259036	18	74259021	74259384	+	+	1	6	4	7	25	(acde)	18	+	74258852	74258854	CA	null	18	-	74259109	74259107	95	257	1	1	1	1	acde	na	103593032	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
661	19	1259745	1260043	19	48216532	48216948	-	-	8	5	4	0	10	(ac-e)	19	-	1259952	0	null	null	19	+	48216848	0	100	46956896	1	1	0	1	ace	na	103593035	stCE00-859108	FAIL	NA	bkpt.assoc.cn.change	somatic	HIGH	ace	yellow	LATE
663	19	1827846	1828287	19	46462160	46462580	-	+	4	1	1	0	4	(ac-e)	19	-	1828197	1828195	GC	null	19	-	46462299	46462297	98	44634102	1	1	0	1	ace	na	103557059	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	ace	yellow	LATE
665	19	4966588	4966862	19	7873243	7873552	+	+	1	0	0	0	112	(---e)	19	+	4966686	4966688	CT	null	19	-	7873336	7873334	97	2906650	0	0	0	1	e	na	103557060	stCE00-859149	SOMATIC_VAL	E	pcr.gel.electro.AndCNchange	somatic	HIGH	e	red	LATE
667	19	5728934	5729349	19	5954813	5955307	+	-	2	1	2	4	8	(acde)	19	+	5729079	5729081	CT	null	19	+	5955209	5955211	93	226130	0	0	0	1	e	na	103557061	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	e	red	LATE
668	19	5849721	5850104	19	5850933	5851338	-	-	8	0	0	0	42	(---e)	19	-	5850003	5850002	G	null	19	+	5851238	5851239	98	1235	0	0	0	1	e	na	103557062	stCE00-859148	SOMATIC_VAL	E	pcr.gel.electro.AndCNchange	somatic	HIGH	e	red	LATE
669	19	5852569	5852947	19	5889376	5889810	-	-	8	0	0	0	7	(---e)	19	-	5852838	5852834	TCCA	null	19	+	5889716	5889720	97	36878	0	0	0	1	e	na	103557063	stCE00-859147	FAIL	NA	bkpt.assoc.cn.change	somatic	HIGH	e	red	LATE
671	19	5886211	5886678	19	5901123	5901469	-	-	8	0	0	0	6	(---e)	19	-	5886583	5886581	AC	null	19	+	5901373	5901375	97	14790	1	1	1	1	acde	na	103557065	stCE00-859146	SOMATIC_VAL	E	pcr.gel.electro.AndCNchange	somatic	HIGH	acde	grey	EARLY
673	19	6402537	6402862	19	7780855	7781107	+	-	2	18	6	0	63	(ac-e)	19	+	6402632	6402634	AG	null	19	+	7781008	7781010	98	1378376	1	1	0	1	ace	na	103593036	stCE00-858891	SOMATIC_VAL	ACDE	pcr.gel.electro.AndCNchange	somatic	HIGH	ace	yellow	LATE
675	19	7824746	7825127	19	7825527	7825973	-	-	8	0	0	0	11	(---e)	19	-	7825020	7825018	GC	null	19	+	7825862	7825864	89	842	0	0	0	1	e	na	103557069	stCE00-859144	FAIL	NA	bkpt.assoc.cn.change	somatic	HIGH	e	red	LATE
676	19	8012156	8012524	19	8202604	8202998	+	-	2	24	16	4	2	(acde)	19	+	8012251	0	null	CAAACTTT	19	+	8202896	0	93	190645	1	1	1	1	acde	na	103593038	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
679	19	10785413	10785886	19	10788692	10789182	+	+	1	4	2	0	0	(ac--)	19	+	10785513	0	null	ACCAGGCGGGACTGCCCTAGCCCCAGCCCTTA	19	-	10788758	0	89	3245	1	1	0	0	ac	na	103593101	stCE00-858890	SOMATIC_VAL	AC	pcr.gel.electro.AndCNchange	somatic	HIGH	ac	blue	LATE
680	19	10797975	10798545	19	10798330	10798797	-	-	8	5	5	0	0	(ac--)	19	-	10798447	10798442	GTGGG	null	19	+	10798634	10798639	95	187	1	1	0	0	ac	na	103593102	stCE00-859106	SOMATIC_VAL	AC	pcr.gel.electro.AndCNchange	somatic	HIGH	ac	blue	LATE
682	19	40263089	40263392	19	40645792	40646102	+	-	2	4	0	7	15	(a-de)	19	+	40263187	40263188	T	null	19	+	40646007	40646008	100	382820	1	0	0	1	ae	na	103589420	stCE00-859143	FAIL	NA	bkpt.assoc.cn.change	somatic	HIGH	ae	na	LATE
683	19	44948812	44949293	X	144214388	144214800	+	+	32	1	0	4	4	(a-de)	19	+	44948910	0	null	TAAAATAGTTTTCGAGAAGAGTATAGTATTAGTG	X	-	144214487	0	99	NA	0	0	0	0	ade	no cn change seen	103557172	stCE00-859142	SOMATIC_VAL	ADE	pcr.gel.electro.AndCNchange	somatic	HIGH	ade	na	LATE
684	19	48246763	48247069	19	50168637	50168924	+	+	1	5	3	0	20	(ac-e)	19	+	48246860	0	null	null	19	-	50168729	0	97	1921869	1	1	0	1	ace	na	103593044	stCE00-858889	FAIL	NA	bkpt.assoc.cn.change	somatic	HIGH	ace	yellow	LATE
685	19	48604836	48605112	19	50169439	50169687	-	+	4	3	0	0	13	(a--e)	19	-	48605018	0	null	TGAAGT	19	-	50169531	0	100	1564513	1	1	0	1	ace	na	103557174	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	ace	yellow	LATE
686	20	9303941	9304250	20	9305499	9305924	+	+	1	2	0	0	12	(a--e)	20	+	9304033	0	null	AAAGAAAAGGAATCTCAAATA	20	-	9305581	0	95	1548	1	1	0	1	ace	na	103557175	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	ace	yellow	LATE
687	20	12836348	12836628	20	14280837	14281264	-	+	4	9	7	9	20	(acde)	20	-	12836536	0	null	TACATTTGTGTGTATTATTATGTGTAACTTTCTTAAAAGTTA	20	-	14280930	0	98	1444394	1	1	1	1	acde	na	103593049	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
688	20	12998439	12998885	20	53647602	53648065	+	-	2	0	1	2	5	(-cde)	20	+	12998537	0	null	CATGAGCTACAAATATATATAATTGGGTAAATTATATATATTGTAATATATATATAATATATATATATATAAATACATATATATATATATATAATTATATATAATTGCTCTAATTAAATATATATT	20	+	53647969	0	99	40649432	1	1	1	1	acde	na	103557177	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
689	20	13999955	14000289	20	14230263	14230612	+	-	2	12	4	21	22	(acde)	20	+	14000062	0	null	TCA	20	+	14230519	0	98	230457	1	1	1	1	acde	na	103593050	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
692	20	22265477	22265791	20	53766630	53766947	+	-	2	0	0	6	6	(--de)	20	+	22265589	0	null	TATATATAATATATAGTATCTGATTATATAT	20	+	53766851	0	100	31501262	1	1	1	1	acde	na	103589424	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
693	20	30196063	30196456	20	51634147	51634548	+	+	1	2	2	5	20	(acde)	20	+	30196154	0	null	CGTGAGATATATATATATATATATATATATGTATATATATATATACATAAACATATATATATAGTATTTACCTTGTAAATACTAAGATTG	20	-	51634243	0	99	21438089	1	1	1	1	acde	na	103593114	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
694	20	30673356	30673637	20	30674314	30674758	+	+	1	5	1	1	5	(acde)	20	+	30673464	30673466	AG	null	20	-	30674406	30674404	89	942	1	1	1	1	acde	na	103557182	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
696	20	30909876	30910390	20	30911929	30912304	-	+	4	0	0	0	8	(---e)	20	-	30910284	30910279	ACCCG	null	20	-	30912042	30912037	95	1758	0	0	0	1	e	na	103557184	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	e	red	LATE
695	20	30910345	30910741	20	30911589	30911914	+	-	2	0	2	0	11	(-c-e)	20	+	30910445	0	null	null	20	+	30911807	0	62	1362	0	0	0	0	na	no cn change seen	103557183	NA	0	NA	bkpt.assoc.cn.change	unconfirmed	MEDIUM	ce	na	NA
701	20	37758059	37758366	20	38046379	38046727	-	-	8	3	1	3	8	(acde)	20	-	37758275	37758273	TG	null	20	+	38046629	38046631	99	288354	1	1	1	1	acde	na	103557185	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
702	20	37813568	37813914	20	49545371	49545676	-	-	8	6	0	3	10	(a-de)	20	-	37813818	37813816	AT	null	20	+	49545569	49545571	98	11731751	1	1	1	1	acde	na	103557186	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
706	20	42741598	42741896	20	42772208	42772519	+	-	2	2	5	2	7	(acde)	20	+	42741692	42741693	C	null	20	+	42772405	42772406	93	30713	1	1	1	1	acde	na	103557190	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
707	20	44144061	44144353	20	44144832	44145137	+	+	1	2	0	2	10	(a-de)	20	+	44144153	44144155	TC	null	20	-	44144946	44144944	95	793	1	1	0	1	ace	na	103557191	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	ace	yellow	LATE
708	20	50263121	50263539	20	52748211	52748643	-	+	4	0	0	6	0	(--d-)	20	-	50263399	50263397	CA	null	20	-	52748316	52748314	93	2484917	0	0	1	0	d	na	103589428	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	d	purple	LATE
709	20	61039400	61039828	20	61492501	61493028	+	+	1	0	0	0	6	(---e)	20	+	61039491	0	null	CCCAGTGACACACGTCAAGTGACTTGGGAC	20	-	61492596	0	96	453105	0	0	0	1	e	na	103557192	stCE00-859141	FAIL	NA	bkpt.assoc.cn.change	somatic	HIGH	e	red	LATE
710	20	61339684	61340010	20	61354294	61354646	+	+	1	0	0	0	8	(---e)	20	+	61339777	61339779	GG	null	20	-	61354419	61354417	99	14642	0	0	0	1	e	na	103557193	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	e	red	LATE
714	21	14516571	14517148	21	14521491	14521989	+	-	2	0	2	0	7	(-c-e)	21	+	14516728	14516730	TG	null	21	+	14521813	14521815	99	5085	0	0	0	0	na	no cn change seen	103557195	NA	0	NA	bkpt.assoc.cn.change	unconfirmed	MEDIUM	ce	na	NA
715	21	17754174	17754502	21	21698829	21699190	+	-	2	6	1	4	21	(acde)	21	+	17754267	17754269	AT	null	21	+	21699098	21699100	100	3944831	1	1	1	1	acde	na	103593065	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
716	21	17859904	17860447	21	17875904	17876339	-	-	8	7	0	0	0	(a---)	21	-	17860329	17860327	TA	null	21	+	17876202	17876204	99	15873	1	0	0	0	a	na	103593066	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	a	green	LATE
717	21	18186246	18186709	21	18251137	18251570	+	+	1	0	0	4	0	(--d-)	21	+	18186347	0	null	AGACATTTTAAAATAGACATTTTAAAATAGACATTTTAAA	21	-	18251283	0	98	64936	0	0	0	0	na	no cn change seen	103589431	NA	0	NA	bkpt.assoc.cn.change	unconfirmed	MEDIUM	d	purple	NA
718	21	18638980	18639365	21	19025699	19026125	+	-	2	0	0	0	11	(---e)	21	+	18639089	18639091	AC	null	21	+	19025984	19025986	62	386895	0	0	0	1	e	na	103557197	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	e	red	LATE
719	21	19284803	19285346	21	19286412	19286726	+	+	1	1	1	0	6	(ac-e)	21	+	19284906	0	null	T	21	-	19286512	0	94	1606	1	1	0	1	ace	na	103557198	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	ace	yellow	LATE
722	21	21819009	21819423	22	29065901	29066493	-	+	32	1	1	0	4	(ac-e)	21	-	21819207	21819205	AA	null	22	-	29066007	29066005	95	NA	0	0	0	0	na	no cn change seen	103557201	NA	0	NA	bkpt.assoc.cn.change	unconfirmed	MEDIUM	ace	yellow	NA
724	21	22703767	22704322	21	26553476	26553818	-	+	4	0	0	4	0	(--d-)	21	-	22704205	22704204	C	null	21	-	26553570	26553569	88	3849365	0	0	1	0	d	na	103589432	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	d	purple	LATE
725	21	24682898	24683152	21	24684111	24684341	+	-	2	103	49	120	281	(acde)	21	+	24682988	24682990	TG	null	21	+	24684248	24684250	64	1260	1	1	1	1	acde	na	103593069	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
727	21	25249871	25250131	21	25637043	25637300	-	+	4	46	24	45	173	(acde)	21	-	25250049	25250044	GTTCA	null	21	-	25637135	25637130	94	387086	1	1	1	1	acde	na	103593071	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
728	21	25392537	25392843	21	25394180	25394468	+	+	1	0	0	6	0	(--d-)	21	+	25392633	0	null	G	21	-	25394289	0	90	1656	1	1	1	1	acde	na	103589435	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
730	21	27358796	27359231	21	27449576	27449954	+	-	2	2	2	2	7	(acde)	21	+	27358884	27358889	TGCCT	null	21	+	27449823	27449828	94	90939	1	1	1	1	acde	na	103557204	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
731	21	31571265	31571557	21	41994802	41995056	+	-	2	16	5	33	39	(acde)	21	+	31571354	31571356	GC	null	21	+	41994965	41994967	92	10423611	1	1	1	1	acde	na	103593073	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
734	22	29065525	29066118	X	90035536	90035969	+	-	32	0	0	0	6	(---e)	22	+	29065602	29065609	CAAAATA	null	X	+	90035725	90035732	95	NA	0	0	0	0	na	no cn change seen	103557208	NA	0	NA	bkpt.assoc.cn.change	unconfirmed	MEDIUM	e	red	NA
737	22	40445215	40445602	22	40493397	40493842	+	-	2	2	1	1	16	(acde)	22	+	40445363	40445365	TA	null	22	+	40493745	40493747	98	48382	0	0	0	1	e	na	103557209	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	e	red	LATE
741	X	53710349	53710817	X	56712256	56712620	+	-	2	5	0	4	7	(a-de)	X	+	53710441	0	null	TACATATATATATATATGTATTAT	X	+	56712524	0	100	3002083	1	1	1	1	acde	na	103557213	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
743	X	65358043	65358490	X	67811876	67812323	-	+	4	5	3	4	10	(acde)	X	-	65358389	0	null	TCCTTATCTCCATCTGAGACCAACTCAGCCATCTTGGAAACAGATGACCATCTATATATAGATGACTATTGTCATCTATATATAGATGGTAGATATATATATATCTACCATCTATATATATATATATATATATATAGAC	X	-	67811968	0	82	2453579	1	1	1	1	acde	na	103593085	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
744	X	65937124	65937583	X	65941667	65942277	+	+	1	0	1	1	5	(-cde)	X	+	65937301	65937302	T	null	X	-	65941752	65941751	100	4451	1	1	1	1	acde	na	103557215	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
745	X	65937304	65937710	X	72632779	72633134	+	+	1	3	1	2	10	(acde)	X	+	65937393	65937396	CTT	null	X	-	72632877	72632874	97	6695484	1	1	1	1	acde	na	103557216	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
746	X	69891652	69892009	X	72631940	72632266	-	+	4	8	8	10	22	(acde)	X	-	69891919	69891916	AAT	null	X	-	72632030	72632027	64	2740111	1	1	1	1	acde	na	103593086	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
747	X	70013663	70013945	X	70016887	70017171	-	+	4	19	5	21	65	(acde)	X	-	70013854	70013851	TTT	null	X	-	70016975	70016972	98	3121	1	1	1	1	acde	na	103593087	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
748	X	71885318	71885652	X	75202932	75203406	+	-	2	2	2	2	7	(acde)	X	+	71885436	71885438	TG	null	X	+	75203309	75203311	100	3317873	1	1	1	1	acde	na	103557219	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
749	X	78892241	78892559	X	90006439	90006697	+	-	2	5	1	1	18	(acde)	X	+	78892332	78892337	TAAAA	null	X	+	90006606	90006611	100	11114274	1	1	1	1	acde	na	103593092	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
750	X	79508956	79509342	X	89986245	89986617	+	-	2	3	1	2	5	(acde)	X	+	79509075	79509080	GTCCA	null	X	+	89986519	89986524	100	10477444	1	1	1	1	acde	na	103557221	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
753	X	140369996	140370321	X	142022729	142023045	-	-	8	2	2	10	23	(acde)	X	-	140370232	0	null	null	X	+	142022950	0	94	1652718	1	1	1	1	acde	na	103593144	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
754	X	141340778	141341188	X	146956478	146956742	-	-	8	4	1	3	4	(acde)	X	-	141341098	141341096	TG	null	X	+	146956640	146956642	99	5615542	1	1	1	1	acde	na	103557225	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
755	X	142005709	142005955	X	142050932	142051226	-	-	8	26	16	12	68	(acde)	X	-	142005863	142005859	CAGT	null	X	+	142051136	142051140	99	45273	1	1	1	1	acde	na	103593104	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
756	X	142009302	142009605	X	142030000	142030279	+	+	1	10	7	5	21	(acde)	X	+	142009401	142009402	C	null	X	-	142030095	142030094	93	20694	1	1	1	1	acde	na	103593105	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
757	X	142085472	142085948	X	142093409	142093714	+	+	1	5	2	0	6	(ac-e)	X	+	142085586	0	null	ATTATTG	X	-	142093502	0	94	7916	1	1	0	1	ace	na	103557228	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	ace	yellow	LATE
758	X	142576814	142577059	X	146947688	146947945	+	+	1	8	7	11	44	(acde)	X	+	142576906	142576909	TGA	null	X	-	146947786	146947783	99	4370880	1	1	1	1	acde	na	103593107	NA	0	NA	bkpt.assoc.cn.change	somatic	HIGH	acde	grey	EARLY
760	X	148993554	148993988	X	148997444	148997744	+	+	1	7	0	9	0	(a-d-)	X	+	148993642	148993645	ATT	null	X	-	148997549	148997546	95	3907	0	0	0	0	acd	no cn change seen	103593109	stCE00-859120	SOMATIC_VAL	CD	pcr.gel.electro.AndCNchange	somatic	HIGH	acd	na	LATE