id	chrl	l5	l3	chrh	h5	h3	stl	sth	paired.Flag	PD9775a	PD9775c	brass1.presence.summary	brass2_chr_from	brass2_strand_from	brass2_loc_from_min	brass2_loc_from_max	brass2_microhomology	brass2_nontemplated_insertion	brass2_chr_to	brass2_strand_to	brass2_loc_to_min	brass2_loc_to_max	brass2_score	distance.between.breakpoints	CN_a	CN_c	CN.presence.regions	val.verdict	val.platform	CONFIDENCE	consensus.regions	color	TIMING
6	1	27303660	27304000	8	19599824	19600333	+	-	32	2	5	(ac)	1	+	27303825	27303828	TTC	null	8	+	19600243	19600246	93	NA	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
7	1	28565806	28566035	1	28568250	28568659	-	+	4	3	4	(ac)	1	-	28565945	28565943	GC	null	1	-	28568348	28568346	92	2403	0	0	na	no.cn.change	copy.number.visual.inspection	MEDIUM	ac	grey	NA
15	1	151805576	151805891	1	151839755	151840034	-	+	4	12	11	(ac)	1	-	151805787	151805784	GTG	null	1	-	151839863	151839860	64	34076	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
16	1	155626916	155627229	1	155627533	155627971	+	+	1	5	5	(ac)	1	+	155627074	155627075	G	null	1	-	155627634	155627633	94	560	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
18	1	193180007	193180378	1	193184570	193184922	-	+	4	6	10	(ac)	1	-	193180275	193180273	CT	null	1	-	193184666	193184664	95	4391	0	0	na	no.cn.change	copy.number.visual.inspection	MEDIUM	ac	grey	NA
20	1	196497821	196498223	7	110653494	110653997	-	+	32	4	3	(ac)	1	-	196498062	196498059	TCA	null	7	-	110653593	110653590	95	NA	0	0	na	no.cn.change	copy.number.visual.inspection	MEDIUM	ac	grey	NA
21	1	214396000	214396275	1	214587556	214587844	-	+	4	8	9	(ac)	1	-	214396171	0	null	CCACA	1	-	214587659	0	99	191488	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
23	1	228266566	228266977	1	228279964	228280406	+	+	1	3	4	(ac)	1	+	228266652	228266654	CT	null	1	-	228280059	228280057	100	13407	0	0	na	no.cn.change	copy.number.visual.inspection	MEDIUM	ac	grey	NA
27	2	9728374	9728687	2	9767246	9767654	-	+	4	2	5	(ac)	2	-	9728572	9728568	AGAG	null	2	-	9767354	9767350	94	38782	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
42	2	72039594	72039962	2	72046470	72046835	-	+	4	5	6	(ac)	2	-	72039804	72039803	T	null	2	-	72046571	72046570	100	6767	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
43	2	72757823	72758276	2	72759950	72760411	+	-	2	2	4	(ac)	2	+	72758038	72758041	CAA	null	2	+	72760312	72760315	100	2274	0	0	na	no.cn.change	copy.number.visual.inspection	MEDIUM	ac	grey	NA
45	2	83830569	83830937	2	83832757	83833067	-	+	4	4	4	(ac)	2	-	83830825	83830823	AT	null	2	-	83832867	83832865	99	2042	0	0	na	no.cn.change	copy.number.visual.inspection	MEDIUM	ac	grey	NA
48	2	152072094	152072576	2	152075821	152076254	-	+	4	7	2	(ac)	2	-	152072475	152072472	ATT	null	2	-	152075931	152075928	100	3456	0	0	na	no.cn.change	copy.number.visual.inspection	MEDIUM	ac	grey	NA
50	2	158557269	158557631	2	158566452	158566868	-	+	4	3	10	(ac)	2	-	158557532	0	null	CACA	2	-	158566564	0	65	9032	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
51	2	159013029	159013491	2	159034635	159035066	-	+	4	4	3	(ac)	2	-	159013393	0	null	null	2	-	159034767	0	97	21374	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
53	2	197027853	197028363	2	197056799	197057290	-	+	4	5	2	(ac)	2	-	197028184	197028182	AT	null	2	-	197056894	197056892	97	28710	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
56	2	200347464	200347914	2	201231218	201231631	-	+	4	3	5	(ac)	2	-	200347768	200347767	T	null	2	-	201231314	201231313	99	883546	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
57	2	201642359	201642751	7	134993216	134993636	+	-	32	5	6	(ac)	2	+	201642466	201642469	GGC	null	7	+	134993538	134993541	99	NA	0	0	na	no.cn.change	copy.number.visual.inspection	MEDIUM	ac	grey	NA
58	2	204576310	204576766	2	204579894	204580348	-	+	4	4	2	(ac)	2	-	204576661	0	null	null	2	-	204580046	0	95	3385	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
60	3	974322	974631	3	975746	976117	-	+	4	8	11	(ac)	3	-	974523	0	null	null	3	-	975841	0	89	1318	0	0	na	no.cn.change	copy.number.visual.inspection	MEDIUM	ac	grey	NA
62	3	15660339	15660628	3	15665740	15666175	-	+	4	10	10	(ac)	3	-	15660522	15660520	AA	null	3	-	15665851	15665849	100	5329	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
63	3	25222652	25223155	9	94638697	94639152	-	-	32	5	1	(ac)	3	-	25223066	25223062	TATT	null	9	+	94639013	94639017	97	NA	0	0	na	no.cn.change	copy.number.visual.inspection	MEDIUM	ac	grey	NA
64	3	25227921	25228216	9	94648730	94649158	+	+	32	7	8	(ac)	3	+	25228025	0	null	A	9	-	94648827	0	78	NA	0	0	na	no.cn.change	copy.number.visual.inspection	MEDIUM	ac	grey	NA
65	3	39757267	39757708	7	128899041	128899336	-	-	32	5	5	(ac)	3	-	39757589	39757585	TTGA	null	7	+	128899241	128899245	94	NA	0	0	na	no.cn.change	copy.number.visual.inspection	MEDIUM	ac	grey	NA
66	3	39769539	39770018	7	128921052	128921547	+	+	32	6	2	(ac)	3	+	39769647	39769649	AG	null	7	-	128921163	128921161	99	NA	0	0	na	no.cn.change	copy.number.visual.inspection	MEDIUM	ac	grey	NA
71	3	135477991	135478440	3	135481857	135482175	-	+	4	5	3	(ac)	3	-	135478336	135478334	AG	null	3	-	135482021	135482019	95	3685	0	0	na	no.cn.change	copy.number.visual.inspection	MEDIUM	ac	grey	NA
72	3	137724696	137725136	3	137739180	137739513	-	+	4	3	4	(ac)	3	-	137725028	137725026	TT	null	3	-	137739340	137739338	85	14312	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
78	4	3770628	3771102	5	131807243	131807562	-	-	32	6	4	(ac)	4	-	3771001	0	null	T	5	+	131807459	0	95	NA	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
84	4	75937370	75937733	15	97614740	97615170	-	-	32	5	5	(ac)	4	-	75937606	75937603	ATA	null	15	+	97615055	97615058	100	NA	0	0	na	no.cn.change	copy.number.visual.inspection	MEDIUM	ac	grey	NA
85	4	75989353	75989656	4	78833675	78833920	+	+	1	8	7	(ac)	4	+	75989445	75989446	G	null	4	-	78833783	78833782	100	2844338	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
87	4	144236964	144237388	4	144876283	144876846	-	+	4	5	0	(a-)	4	-	144237277	0	null	ATGTATTTTATGTACAGAATAAAATATATATTTGGTGTACTTTCATATTTTATGTACAGTATATAATACATGCTTTGGGTACT	4	-	144876423	0	100	639146	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	MEDIUM	ac	grey	NA
89	4	153295719	153296241	10	96484906	96485397	+	-	32	2	4	(ac)	4	+	153295839	153295842	TCA	null	10	+	96485233	96485236	93	NA	0	0	na	no.cn.change	copy.number.visual.inspection	MEDIUM	ac	grey	NA
88	4	153295676	153295984	10	96485102	96485516	-	+	32	5	2	(ac)	4	-	153295865	0	null	AACTTT	10	-	96485207	0	92	NA	0	0	na	no.cn.change	copy.number.visual.inspection	MEDIUM	ac	grey	NA
90	4	175311922	175312242	4	175327846	175328271	-	+	4	5	5	(ac)	4	-	175312143	0	null	AA	4	-	175327959	0	89	15816	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
91	5	4791837	4792276	5	5148886	5149395	-	+	4	5	1	(ac)	5	-	4792141	4792137	CATC	null	5	-	5149013	5149009	99	356872	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
95	5	41866804	41867279	5	41878691	41879018	+	-	2	5	7	(ac)	5	+	41866900	41866905	TACTC	null	5	+	41878909	41878914	99	12009	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
108	6	21318654	21318974	13	19933014	19933281	+	+	32	5	8	(ac)	6	+	21318746	21318750	CACC	null	13	-	19933112	19933108	100	NA	0	0	na	no.cn.change	copy.number.visual.inspection	MEDIUM	ac	grey	NA
109	6	21598661	21599053	6	21599210	21599540	+	-	2	5	7	(ac)	6	+	21598755	21598758	TGT	null	6	+	21599424	21599427	65	669	0	0	na	no.cn.change	copy.number.visual.inspection	MEDIUM	ac	grey	NA
110	6	28825080	28825443	6	99484317	99484684	+	+	1	4	2	(ac)	6	+	28825169	28825171	GT	null	6	-	99484413	99484411	98	70659244	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
111	6	30137416	30137870	6	30143644	30144150	-	+	4	4	0	(a-)	6	-	30137734	0	null	null	6	-	30143779	0	93	6045	0	0	na	no.cn.change	copy.number.visual.inspection	MEDIUM	a	yellow	NA
112	6	37263083	37263400	6	37292444	37292782	-	+	4	8	4	(ac)	6	-	37263286	37263284	CT	null	6	-	37292542	37292540	100	29256	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
113	6	38632649	38632912	6	75209959	75210287	-	-	8	5	2	(ac)	6	-	38632814	0	null	null	6	+	75210160	0	93	36577346	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
118	6	41396613	41397076	17	27312616	27313118	+	+	32	4	1	(ac)	6	+	41396720	41396723	CAC	null	17	-	27312859	27312856	98	NA	0	0	na	no.cn.change	copy.number.visual.inspection	MEDIUM	ac	grey	NA
119	6	66851806	66852217	6	66853918	66854230	+	-	2	4	6	(ac)	6	+	66851902	66851904	TT	null	6	+	66854126	66854128	95	2224	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
125	6	153909744	153910017	6	153915685	153915990	-	+	4	9	7	(ac)	6	-	153909916	153909913	CAA	null	6	-	153915777	153915774	95	5861	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
128	7	69086898	69087368	7	69244653	69244964	-	+	4	6	3	(ac)	7	-	69087254	69087252	AG	null	7	-	69244748	69244746	64	157494	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
131	7	86765859	86766346	7	86772322	86772845	+	-	2	4	1	(ac)	7	+	86766013	86766014	C	null	7	+	86772727	86772728	95	6714	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
132	7	119503174	119503559	7	119511707	119512054	+	-	2	5	3	(ac)	7	+	119503331	119503337	TCAAAT	null	7	+	119511933	119511939	100	8602	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
134	7	134685920	134686358	7	134691737	134692167	+	-	2	5	3	(ac)	7	+	134686012	0	null	TGC	7	+	134692043	0	93	6031	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
135	7	142761859	142762223	7	142770523	142770985	-	+	4	3	7	(ac)	7	-	142762049	142762047	AC	null	7	-	142770616	142770614	100	8567	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
141	8	39329894	39330323	8	40309588	40310015	-	-	8	5	1	(ac)	8	-	39330218	39330215	CAT	null	8	+	40309917	40309920	95	979699	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
148	8	120877224	120877655	8	122016507	122016822	-	+	4	5	4	(ac)	8	-	120877562	120877559	AGT	null	8	-	122016643	122016640	85	1139081	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
151	8	131065904	131066363	8	131072586	131073138	-	+	4	3	4	(ac)	8	-	131066239	131066238	T	null	8	-	131072753	131072752	100	6514	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
154	9	3282877	3283241	9	3289007	3289333	-	+	4	6	5	(ac)	9	-	3283115	3283113	CA	null	9	-	3289096	3289094	99	5981	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
155	9	10161264	10161673	9	10189643	10190087	-	+	4	4	2	(ac)	9	-	10161563	0	null	AA	9	-	10189749	0	70	28186	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
156	9	12288042	12288323	9	12296166	12296497	-	+	4	15	6	(ac)	9	-	12288224	12288221	TCC	null	9	-	12296259	12296256	99	8035	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
157	9	12686028	12686323	9	12690013	12690324	-	+	4	11	9	(ac)	9	-	12686231	0	null	A	9	-	12690104	0	100	3873	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
165	9	95810596	95810967	9	95824047	95824551	-	+	4	5	5	(ac)	9	-	95810848	95810847	T	null	9	-	95824140	95824139	94	13292	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
169	10	15130210	15130697	10	15194573	15195039	-	+	4	4	2	(ac)	10	-	15130575	15130572	ATG	null	10	-	15194665	15194662	95	64090	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
179	10	86747175	86747424	10	86750556	86750950	-	+	4	5	2	(ac)	10	-	86747320	86747319	T	null	10	-	86750682	86750681	99	3362	0	0	na	no.cn.change	copy.number.visual.inspection	MEDIUM	ac	grey	NA
181	10	94517870	94518252	10	95612180	95612490	-	+	4	4	5	(ac)	10	-	94518112	94518110	AT	null	10	-	95612298	95612296	94	1094186	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
182	10	100970124	100970405	10	100974490	100974861	-	+	4	4	2	(ac)	10	-	100970271	100970266	TTTTT	null	10	-	100974582	100974577	94	4311	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
184	11	17593374	17593942	11	18481344	18481874	-	+	4	0	5	(-c)	11	-	17593798	17593797	C	null	11	-	18481476	18481475	99	887678	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
190	11	103160626	103160998	11	103182485	103182914	+	-	2	6	4	(ac)	11	+	103160721	0	null	AG	11	+	103182815	0	80	22094	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
193	12	12099385	12099789	12	12208980	12209300	+	+	1	9	2	(ac)	12	+	12099471	0	null	GT	12	-	12209071	0	90	109600	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
196	12	75802390	75802776	12	75818066	75818495	-	+	4	4	1	(ac)	12	-	75802610	0	null	G	12	-	75818158	0	100	15548	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
198	12	91454894	91455384	12	91460187	91460672	-	+	4	4	2	(ac)	12	-	91455193	0	null	null	12	-	91460280	0	100	5087	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
199	12	102947379	102947768	12	102954439	102954854	-	+	4	4	7	(ac)	12	-	102947659	0	null	null	12	-	102954534	0	94	6875	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
200	12	118111324	118111635	12	118681219	118681586	-	+	4	5	3	(ac)	12	-	118111496	118111495	T	null	12	-	118681318	118681317	90	569822	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
202	12	123639798	123640224	12	123645236	123645569	-	+	4	6	1	(ac)	12	-	123640122	123640119	TCA	null	12	-	123645331	123645328	100	5209	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
207	14	35870842	35871165	14	97913985	97914320	+	-	2	5	2	(ac)	14	+	35870941	35870943	GA	null	14	+	97914205	97914207	83	62043264	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
210	14	44733365	44733661	14	46341975	46342410	-	+	4	4	8	(ac)	14	-	44733541	0	null	null	14	-	46342070	0	99	1608529	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
213	14	101911676	101912178	14	101918456	101918730	-	+	4	4	3	(ac)	14	-	101912063	101912062	G	null	14	-	101918570	101918569	69	6507	1	1	ac	bkpt.assoc.cn.change	copy.number.visual.inspection	HIGH	ac	grey	EARLY
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