id	chrl	l5	l3	chrh	h5	h3	stl	sth	paired.Flag	PD9849a	PD9849h	PD9849j	bass1.presence.summary	brass2_chr_from	brass2_strand_from	brass2_loc_from_min	brass2_loc_from_max	brass2_microhomology	brass2_nontemplated_insertion	brass2_chr_to	brass2_strand_to	brass2_loc_to_min	brass2_loc_to_max	brass2_score	distance.between.breakpoints	CN_A	CN_H	CN_J	val.regions	val.verdict	val.platform	consensus.regions	Confidence	color	TIMING
107	1	120237402	120237714	1	120239551	120239867	+	-	2	5	8	0	(ah-)	1	+	120237499	0	null	CT	1	+	120239771	0	94	2272	1	1	0	ah	bkpt.assoc.cn.change	copy.number.visual.inspection	ah	HIGH	yellow	LATE
108	1	120237938	120238280	1	120240601	120240961	+	+	1	6	11	0	(ah-)	1	+	120238069	120238072	CCA	null	1	-	120240694	120240691	100	2625	1	1	0	ah	bkpt.assoc.cn.change	copy.number.visual.inspection	ah	HIGH	yellow	LATE
145	1	180232394	180232744	1	180233852	180234204	+	-	2	8	3	6	(ahj)	1	+	180232491	180232492	A	null	1	+	180234065	180234066	89	1574	1	1	1	ahj	bkpt.assoc.cn.change	copy.number.visual.inspection	ahj	HIGH	grey	EARLY
146	1	180232326	180232635	1	180234726	180234994	-	+	4	3	5	2	(ahj)	1	-	180232542	180232537	TACAG	null	1	-	180234827	180234822	67	2285	1	1	1	ahj	bkpt.assoc.cn.change	copy.number.visual.inspection	ahj	HIGH	grey	EARLY
867	4	140937250	140937548	4	140940617	140940876	+	-	2	14	13	2	(ahj)	4	+	140937341	140937345	CACT	null	4	+	140940782	140940786	98	3441	1	1	0	ah	bkpt.assoc.cn.change	copy.number.visual.inspection	ah	HIGH	grey	EARLY
909	4	169668013	169668303	4	170375110	170375402	+	-	2	16	11	5	(ahj)	4	+	169668116	169668117	A	null	4	+	170375292	170375293	98	707176	1	1	0	ah	bkpt.assoc.cn.change	copy.number.visual.inspection	ah	HIGH	grey	EARLY
1136	6	292928	293272	16	26811450	26811747	+	+	32	5	7	3	(ahj)	6	+	293018	293020	GC	null	16	-	26811550	26811548	98	NA	0	0	0	na	no.associated.cn.change	copy.number.visual.inspection	ahj	MEDIUM	grey	NA
1262	6	120967161	120967512	6	121070150	121070623	-	-	8	0	5	0	(-h-)	6	-	120967383	120967378	ACAAA	null	6	+	121070451	121070456	100	103068	0	0	0	na	no.associated.cn.change	copy.number.visual.inspection	h	MEDIUM	green	NA
1452	7	108237231	108237511	7	108238366	108238642	-	-	8	0	0	5	(--j)	7	-	108237497	108237484	TTTGGTCATGTCG	null	7	+	108238496	108238509	75	999	0	0	0	na	no.associated.cn.change	copy.number.visual.inspection	j	MEDIUM	purple	NA
1549	8	36761107	36761358	8	39065381	39065620	-	+	4	167	142	56	(ahj)	8	-	36761267	36761264	AAA	null	8	-	39065474	39065471	99	2304207	1	1	1	ahj	bkpt.assoc.cn.change	copy.number.visual.inspection	ahj	HIGH	grey	EARLY
1551	8	36854026	36854300	8	36856605	36856843	-	-	8	31	41	16	(ahj)	8	-	36854209	36854207	GT	null	8	+	36856748	36856750	96	2539	1	1	1	ahj	bkpt.assoc.cn.change	copy.number.visual.inspection	ahj	HIGH	grey	EARLY
1554	8	37050201	37050477	8	37213084	37213370	+	+	1	15	20	3	(ahj)	8	+	37050303	37050305	GT	null	8	-	37213186	37213184	92	162883	0	0	0	na	no.associated.cn.change	copy.number.visual.inspection	ahj	MEDIUM	grey	NA
1559	8	37613797	37614072	8	38788893	38789154	+	-	2	26	32	13	(ahj)	8	+	37613883	37613887	AAAC	null	8	+	38789062	38789066	100	1175179	1	1	1	ahj	bkpt.assoc.cn.change	copy.number.visual.inspection	ahj	HIGH	grey	EARLY
1560	8	37615485	37615736	8	38795408	38795690	-	-	8	25	19	9	(ahj)	8	-	37615647	0	null	null	8	+	38795592	0	100	1179945	1	1	1	ahj	bkpt.assoc.cn.change	copy.number.visual.inspection	ahj	HIGH	grey	EARLY
1561	8	37626430	37626749	8	38795430	38795695	+	+	1	11	11	12	(ahj)	8	+	37626522	37626526	CTTT	null	8	-	38795528	38795524	70	1169006	1	1	1	ahj	bkpt.assoc.cn.change	copy.number.visual.inspection	ahj	HIGH	grey	EARLY
1562	8	37989071	37989343	8	38565388	38565644	+	-	2	114	129	29	(ahj)	8	+	37989162	37989163	C	null	8	+	38565554	38565555	98	576392	1	1	1	ahj	bkpt.assoc.cn.change	copy.number.visual.inspection	ahj	HIGH	grey	EARLY
1564	8	38828495	38829002	8	40031910	40032281	+	-	2	5	6	3	(ahj)	8	+	38828584	38828585	G	null	8	+	40032089	40032090	98	1203505	1	1	1	ahj	bkpt.assoc.cn.change	copy.number.visual.inspection	ahj	HIGH	grey	EARLY
1565	8	39101301	39101525	8	39113269	39113511	+	+	1	43	42	13	(ahj)	8	+	39101393	39101395	CT	null	8	-	39113360	39113358	99	11967	1	1	0	ah	bkpt.assoc.cn.change	copy.number.visual.inspection	ah	HIGH	grey	EARLY
1846	9	135401823	135402176	9	135404736	135405010	+	-	2	1	1	5	(ahj)	9	+	135401929	135401936	AAAAAAA	null	9	+	135404911	135404918	92	2982	0	0	0	na	no.associated.cn.change	copy.number.visual.inspection	ahj	MEDIUM	grey	NA
1878	10	32001134	32001418	10	32743452	32743731	+	+	1	8	10	2	(ahj)	10	+	32001224	0	null	TTATTGGTGA	10	-	32743560	0	94	742336	1	1	1	ahj	bkpt.assoc.cn.change	copy.number.visual.inspection	ahj	HIGH	grey	EARLY
1879	10	32002124	32002477	10	129776044	129776378	-	+	4	4	5	1	(ahj)	10	-	32002323	0	null	null	10	-	129776142	0	99	97773819	1	1	0	ah	bkpt.assoc.cn.change	copy.number.visual.inspection	ah	HIGH	grey	EARLY
1896	10	50321889	50322193	10	56159389	56159664	-	+	4	9	9	6	(ahj)	10	-	50322102	50322097	TCCTC	null	10	-	56159491	56159486	99	5837389	1	1	0	ah	bkpt.assoc.cn.change	copy.number.visual.inspection	ah	HIGH	grey	EARLY
1897	10	50717189	50717507	10	130915175	130915437	+	-	2	11	14	5	(ahj)	10	+	50717296	50717298	TG	null	10	+	130915347	130915349	99	80198051	NA	NA	NA	high.level.copy.number.region	not.assessed	NA	ahj	HIGH	grey	EARLY
1899	10	51646014	51646534	10	130914949	130915439	-	+	4	2	4	0	(ah-)	10	-	51646231	0	null	CG	10	-	130915043	0	97	79268812	1	1	1	ahj	bkpt.assoc.cn.change	copy.number.visual.inspection	ahj	HIGH	grey	EARLY
1907	10	55835605	55835922	10	129920710	129920985	-	-	8	9	11	4	(ahj)	10	-	55835832	55835830	AA	null	10	+	129920879	129920881	95	74085047	1	1	1	ahj	bkpt.assoc.cn.change	copy.number.visual.inspection	ahj	HIGH	grey	EARLY
1915	10	62563364	62563608	10	129550547	129550891	-	-	8	79	234	0	(ah-)	10	-	62563509	0	null	null	10	+	129550798	0	79	66987289	1	1	0	ah	bkpt.assoc.cn.change	copy.number.visual.inspection	ah	HIGH	yellow	LATE
1916	10	62571319	62571612	10	122820034	122820365	+	-	2	1	12	0	(ah-)	10	+	62571434	62571437	TTG	null	10	+	122820266	122820269	99	60248832	1	1	0	ah	bkpt.assoc.cn.change	copy.number.visual.inspection	ah	HIGH	yellow	LATE
1917	10	62572560	62572865	10	122925646	122925828	-	+	4	0	17	0	(-h-)	10	-	62572747	0	null	CTTGCAGGTGGCTGCCTCCTTGCTGCATCCTCACATGGTGGAAAGAAAT	10	-	122925699	0	99	60352952	NA	NA	NA	high.level.copy.number.region	not.assessed	NA	h	HIGH	green 	LATE
1920	10	62577659	62577873	10	129551228	129551475	-	+	4	101	224	0	(ah-)	10	-	62577777	0	null	GTGC	10	-	129551316	0	79	66973539	1	1	0	ah	bkpt.assoc.cn.change	copy.number.visual.inspection	ah	HIGH	yellow	LATE
1921	10	62585647	62585901	10	123620271	123620562	+	-	2	0	13	0	(-h-)	10	+	62585743	0	null	TC	10	+	123620454	0	100	61034711	1	1	0	ah	bkpt.assoc.cn.change	copy.number.visual.inspection	ah	HIGH	yellow	LATE
1922	10	62621026	62621321	10	122843692	122843989	-	+	4	13	6	0	(ah-)	10	-	62621226	62621222	ATTT	null	10	-	122843810	122843806	99	60222584	1	1	0	ah	bkpt.assoc.cn.change	copy.number.visual.inspection	ah	HIGH	yellow	LATE
1923	10	62627014	62627262	10	123457742	123457963	+	-	2	94	247	0	(ah-)	10	+	62627101	62627104	TCA	null	10	+	123457871	123457874	95	60830770	1	1	0	ah	bkpt.assoc.cn.change	copy.number.visual.inspection	ah	HIGH	yellow	LATE
1924	10	62764336	62764618	10	122842914	122843206	-	+	4	84	184	21	(ahj)	10	-	62764484	62764480	TGCA	null	10	-	122843007	122843003	100	60078523	1	1	1	ahj	bkpt.assoc.cn.change	copy.number.visual.inspection	ahj	HIGH	grey	EARLY
1926	10	62776901	62777191	10	126699796	126700132	-	+	4	0	0	27	(--j)	10	-	62777098	62777096	GG	null	10	-	126699920	126699918	100	63922822	0	0	1	j	bkpt.assoc.cn.change	copy.number.visual.inspection	j	HIGH	purple	LATE
1928	10	62812664	62812867	10	129228217	129228465	+	+	1	79	175	63	(ahj)	10	+	62812748	62812753	GTCTG	null	10	-	129228304	129228299	100	66415556	NA	NA	NA	high.level.copy.number.region	not.assessed	NA	ahj	HIGH	grey	EARLY
1930	10	63045360	63045594	10	122935096	122935327	-	+	4	114	208	27	(ahj)	10	-	63045500	0	null	TG	10	-	122935189	0	100	59889689	NA	NA	NA	high.level.copy.number.region	not.assessed	NA	ahj	HIGH	grey	EARLY
1931	10	63049136	63049394	10	123316059	123316359	-	-	8	0	0	23	(--j)	10	-	63049299	63049297	CT	null	10	+	123316247	123316249	100	60266948	0	0	1	j	bkpt.assoc.cn.change	copy.number.visual.inspection	j	HIGH	purple	LATE
1933	10	63062950	63063231	10	125289585	125289915	+	+	1	2	5	0	(ah-)	10	+	63063052	0	null	AATGACAAAATATG	10	-	125289676	0	69	62226624	NA	NA	NA	high.level.copy.number.region	not.assessed	NA	ah	HIGH	yellow	LATE
1934	10	63076627	63076954	10	123047119	123047549	-	+	4	0	6	0	(-h-)	10	-	63076828	0	null	GTTATGAAAGGGCACCCTAT	10	-	123047259	0	64	59970431	NA	NA	NA	high.level.copy.number.region	not.assessed	NA	h	HIGH	green 	LATE
1935	10	63084331	63084759	10	125579256	125579665	+	+	1	0	6	0	(-h-)	10	+	63084475	0	null	TAGAGCTTAGGAAGGTAGCCTGGGGTCAGGTCCTGTAAAGCCTGTGTGGTAATTTTTTATGTGTC	10	-	125579382	0	94	62494907	NA	NA	NA	high.level.copy.number.region	not.assessed	NA	h	HIGH	green	LATE
1938	10	63116200	63116676	10	122857293	122857793	-	-	8	5	0	0	(a--)	10	-	63116434	63116426	TGCATGAA	null	10	+	122857621	122857629	94	59741187	NA	NA	NA	high.level.copy.number.region	not.assessed	NA	a	HIGH	yellow	LATE
1939	10	63142738	63142875	10	125624197	125624380	+	+	1	126	269	55	(ahj)	10	+	63142824	63142827	TGT	null	10	-	125624287	125624284	95	62481463	1	1	1	ahj	bkpt.assoc.cn.change	copy.number.visual.inspection	ahj	HIGH	grey	EARLY
1940	10	63223625	63223934	10	63223948	63224173	-	-	8	45	112	22	(ahj)	10	-	63223844	63223841	TGG	null	10	+	63224075	63224078	95	231	1	1	1	ahj	bkpt.assoc.cn.change	copy.number.visual.inspection	ahj	HIGH	grey	EARLY
1941	10	63228566	63229078	10	127194943	127195316	+	-	2	0	4	0	(-h-)	10	+	63228782	63228784	CA	null	10	+	127195205	127195207	94	63966423	1	1	1	ahj	bkpt.assoc.cn.change	copy.number.visual.inspection	ahj	HIGH	grey	EARLY
1942	10	63231967	63232281	10	122901510	122901882	-	-	8	0	5	0	(-h-)	10	-	63232197	63232189	GTGAGAAG	null	10	+	122901761	122901769	95	59669564	1	1	1	ahj	bkpt.assoc.cn.change	copy.number.visual.inspection	ahj	HIGH	grey	EARLY
1944	10	63245080	63245456	10	122992275	122992618	+	-	2	0	9	0	(-h-)	10	+	63245193	0	null	null	10	+	122992483	0	95	59747290	1	1	1	ahj	bkpt.assoc.cn.change	copy.number.visual.inspection	ahj	HIGH	grey	EARLY
1946	10	63255387	63255747	10	125529557	125529820	+	-	2	104	253	47	(ahj)	10	+	63255479	63255481	GC	null	10	+	125529720	125529722	99	62274241	NA	NA	NA	high.level.copy.number.region	not.assessed	NA	ahj	HIGH	grey	EARLY
1947	10	63344948	63345212	10	125229833	125230071	-	+	4	150	253	76	(ahj)	10	-	63345123	63345122	T	null	10	-	125229930	125229929	99	61884807	NA	NA	NA	high.level.copy.number.region	not.assessed	NA	ahj	HIGH	grey	EARLY
1948	10	63357120	63357495	10	123365788	123366243	+	+	1	5	0	0	(a--)	10	+	63357250	0	null	A	10	-	123365915	0	94	60008665	1	1	1	ahj	bkpt.assoc.cn.change	copy.number.visual.inspection	ahj	HIGH	grey	EARLY
1951	10	63363930	63364316	10	123617860	123618261	-	+	4	6	0	0	(a--)	10	-	63364142	63364140	TT	null	10	-	123617957	123617955	85	60253815	NA	NA	NA	high.level.copy.number.region	not.assessed	NA	a	HIGH	yellow	LATE
1953	10	63410195	63410656	10	122992244	122992730	-	+	4	0	4	0	(-h-)	10	-	63410465	0	null	null	10	-	122992384	0	95	59581919	NA	NA	NA	high.level.copy.number.region	not.assessed	NA	h	HIGH	green 	LATE
1954	10	63424878	63425171	10	125428266	125428508	-	-	8	50	129	0	(ah-)	10	-	63425077	63425076	G	null	10	+	125428415	125428416	94	62003338	1	1	0	ah	bkpt.assoc.cn.change	copy.number.visual.inspection	ah	HIGH	yellow	LATE
1955	10	63433361	63433605	10	129189002	129189375	+	-	2	73	228	0	(ah-)	10	+	63433468	0	null	null	10	+	129189282	0	98	65755814	1	1	0	ah	bkpt.assoc.cn.change	copy.number.visual.inspection	ah	HIGH	yellow	LATE
1956	10	63435814	63436056	10	126608456	126608674	+	-	2	77	159	71	(ahj)	10	+	63435908	63435909	C	null	10	+	126608580	126608581	92	63172672	NA	NA	NA	high.level.copy.number.region	not.assessed	NA	ahj	HIGH	grey	EARLY
2004	10	118954494	118954782	10	134071294	134071598	-	-	8	5	3	4	(ahj)	10	-	118954686	118954685	A	null	10	+	134071502	134071503	99	15116816	NA	NA	NA	high.level.copy.number.region	not.assessed	NA	ahj	HIGH	grey	EARLY
2010	10	122804502	122804797	10	125574878	125575173	+	+	1	0	8	0	(-h-)	10	+	122804630	122804634	AAAC	null	10	-	125574975	125574971	93	2770345	NA	NA	NA	high.level.copy.number.region	not.assessed	NA	h	HIGH	green	LATE
2011	10	122809131	122809387	10	123328864	123329177	+	+	1	0	14	0	(-h-)	10	+	122809222	122809223	G	null	10	-	123328961	123328960	96	519739	NA	NA	NA	high.level.copy.number.region	not.assessed	NA	h	HIGH	green	LATE
2012	10	122812872	122813221	10	123424745	123425098	-	+	4	0	13	0	(-h-)	10	-	122813082	122813081	A	null	10	-	123424839	123424838	99	611757	1	1	1	ahj	bkpt.assoc.cn.change	copy.number.visual.inspection	ahj	HIGH	grey	EARLY
2013	10	122815162	122815414	10	126718603	126718826	-	+	4	123	267	25	(ahj)	10	-	122815322	122815320	TG	null	10	-	126718693	126718691	99	3903371	1	1	1	ahj	bkpt.assoc.cn.change	copy.number.visual.inspection	ahj	HIGH	grey	EARLY
2014	10	122817794	122818095	10	123130170	123130452	-	+	4	71	189	25	(ahj)	10	-	122817977	0	null	null	10	-	123130264	0	68	312287	1	1	1	ahj	bkpt.assoc.cn.change	copy.number.visual.inspection	ahj	HIGH	grey	EARLY
2015	10	122818511	122818905	10	125596982	125597364	-	+	4	0	7	0	(-h-)	10	-	122818772	0	null	CCT	10	-	125597098	0	96	2778326	1	1	1	ahj	bkpt.assoc.cn.change	copy.number.visual.inspection	ahj	HIGH	grey	EARLY
2019	10	122820293	122820700	10	122897631	122898035	+	+	1	0	6	0	(-h-)	10	+	122820452	0	null	ACTCATTTTTTACTTGAATTGTGCC	10	-	122897752	0	64	77300	1	1	1	ahj	bkpt.assoc.cn.change	copy.number.visual.inspection	ahj	HIGH	grey	EARLY
2020	10	122820927	122821283	10	123430077	123430424	-	-	8	0	9	0	(-h-)	10	-	122821172	122821168	GTTT	null	10	+	123430329	123430333	98	609157	1	1	1	ahj	bkpt.assoc.cn.change	copy.number.visual.inspection	ahj	HIGH	grey	EARLY
2021	10	122823482	122823863	10	129213434	129213767	+	+	1	5	0	0	(a--)	10	+	122823592	0	null	GACCA	10	-	129213585	0	100	6389993	1	1	1	ahj	bkpt.assoc.cn.change	copy.number.visual.inspection	ahj	HIGH	grey	EARLY
2022	10	122828466	122828714	10	126251723	126251933	+	+	1	101	212	18	(ahj)	10	+	122828558	0	null	null	10	-	126251813	0	100	3423255	NA	NA	NA	high.level.copy.number.region	not.assessed	NA	ahj	HIGH	grey	EARLY
2023	10	122839324	122839549	10	123011541	123011792	-	-	8	135	296	41	(ahj)	10	-	122839454	0	null	null	10	+	123011699	0	100	172245	NA	NA	NA	high.level.copy.number.region	not.assessed	NA	ahj	HIGH	grey	EARLY
2025	10	122858324	122858576	16	6918744	6919023	-	+	32	11	9	0	(ah-)	10	-	122858486	122858484	AT	null	16	-	6918836	6918834	98	NA	1	1	0	ah	bkpt.assoc.cn.change	copy.number.visual.inspection	ah	HIGH	yellow	LATE
2026	10	122875790	122876142	10	125587580	125587930	-	+	4	0	8	0	(-h-)	10	-	122876047	122876045	AT	null	10	-	125587740	125587738	94	2711693	NA	NA	NA	high.level.copy.number.region	not.assessed	NA	h	HIGH	green 	LATE
2027	10	122883494	122883756	16	23843622	23843879	-	-	32	15	3	0	(ah-)	10	-	122883662	122883660	CT	null	16	+	23843783	23843785	95	NA	NA	NA	NA	high.level.copy.number.region	not.assessed	NA	ah	HIGH	yellow	LATE
2028	10	122896916	122897357	10	125478581	125479023	+	+	1	6	5	0	(ah-)	10	+	122897018	0	null	null	10	+	125478680	0	75	2581662	1	1	0	ah	bkpt.assoc.cn.change	copy.number.visual.inspection	ah	HIGH	yellow	LATE
2030	10	122914611	122915023	10	123521783	123522167	+	+	1	0	7	0	(-h-)	10	+	122914720	0	null	GGTCA	10	-	123521919	0	99	607199	NA	NA	NA	high.level.copy.number.region	not.assessed	NA	h	HIGH	green	LATE
2031	10	122916779	122917062	10	126641839	126642212	+	-	2	9	0	0	(a--)	10	+	122916896	0	null	null	10	+	126642112	0	94	3725216	NA	NA	NA	high.level.copy.number.region	not.assessed	NA	a	HIGH	yellow	LATE
2032	10	122921688	122922071	10	123045946	123046354	+	+	1	0	7	0	(-h-)	10	+	122921839	122921843	GTCA	null	10	-	123046069	123046065	99	124230	NA	NA	NA	high.level.copy.number.region	not.assessed	NA	h	HIGH	green	LATE
2034	10	122935513	122935957	10	129171317	129171663	-	-	8	0	10	0	(-h-)	10	-	122935844	122935838	TTTAGG	null	10	+	129171513	129171519	92	6235669	1	1	1	ahj	bkpt.assoc.cn.change	copy.number.visual.inspection	ahj	HIGH	grey	EARLY
2036	10	122936137	122936433	10	129168511	129168786	-	+	4	0	31	0	(-h-)	10	-	122936338	122936337	C	null	10	-	129168600	129168599	95	6232262	1	1	1	ahj	bkpt.assoc.cn.change	copy.number.visual.inspection	ahj	HIGH	grey	EARLY
2038	10	122954677	122955010	10	129189473	129189857	+	+	1	23	60	0	(ah-)	10	+	122954808	122954811	CCT	null	10	-	129189571	129189568	99	6234763	1	1	1	ahj	bkpt.assoc.cn.change	copy.number.visual.inspection	ahj	HIGH	grey	EARLY
2040	10	122971920	122972214	10	125816760	125817194	-	+	4	37	69	18	(ahj)	10	-	122972037	0	null	null	10	-	125816850	0	98	2844813	1	1	1	ahj	bkpt.assoc.cn.change	copy.number.visual.inspection	ahj	HIGH	grey	EARLY
2044	10	123025006	123025248	10	125212902	125213077	+	-	2	124	251	57	(ahj)	10	+	123025095	123025097	TA	null	10	+	125212983	125212985	99	2187888	1	1	1	ahj	bkpt.assoc.cn.change	copy.number.visual.inspection	ahj	HIGH	grey	EARLY
2048	10	123242817	123243084	10	126245911	126246183	-	-	8	98	184	25	(ahj)	10	-	123242991	123242989	AC	null	10	+	126246088	126246090	100	3003097	1	1	1	ahj	bkpt.assoc.cn.change	copy.number.visual.inspection	ahj	HIGH	grey	EARLY
2049	10	123314556	123314764	10	123366682	123366846	-	+	4	126	209	48	(ahj)	10	-	123314715	123314690	GGGTTTCACCATGTTGGCCAGGCTG	null	10	-	123366765	123366740	98	52050	1	1	0	ah	bkpt.assoc.cn.change	copy.number.visual.inspection	ah	HIGH	grey	EARLY
2051	10	123350875	123351205	10	123630809	123631189	+	-	2	5	0	0	(a--)	10	+	123350964	123350967	TTA	null	10	+	123631049	123631052	99	280085	1	1	0	ah	bkpt.assoc.cn.change	copy.number.visual.inspection	ah	HIGH	yellow	LATE
2053	10	123445388	123445635	10	129041203	129041444	+	-	2	101	236	46	(ahj)	10	+	123445479	123445481	AG	null	10	+	129041350	129041352	99	5595871	1	1	0	ah	bkpt.assoc.cn.change	copy.number.visual.inspection	ah	HIGH	grey	EARLY
2054	10	123481862	123482066	10	129141673	129141926	-	+	4	0	8	0	(-h-)	10	-	123481982	123481979	TGC	null	10	-	129141769	129141766	99	5659787	1	1	0	ah	bkpt.assoc.cn.change	copy.number.visual.inspection	ah	HIGH	yellow	LATE
2055	10	123495902	123496200	10	126622190	126622466	-	+	4	0	0	25	(--j)	10	-	123496102	123496100	GA	null	10	-	126622316	126622314	99	3126214	0	0	1	j	bkpt.assoc.cn.change	copy.number.visual.inspection	j	HIGH	purple	LATE
2056	10	123573512	123573927	10	126703919	126704348	-	-	8	7	0	0	(a--)	10	-	123573678	123573673	GTGTG	null	10	+	126704249	126704254	95	3130571	1	1	1	ahj	bkpt.assoc.cn.change	copy.number.visual.inspection	ahj	HIGH	grey	EARLY
2058	10	123606692	123606978	10	125215487	125215759	-	-	8	0	0	22	(--j)	10	-	123606880	123606878	GC	null	10	+	125215659	125215661	91	1608779	0	0	1	j	bkpt.assoc.cn.change	copy.number.visual.inspection	j	HIGH	purple	LATE
2059	10	123634957	123635446	10	127207405	127207891	-	+	4	10	15	4	(ahj)	10	-	123635356	0	null	GTTA	10	-	127207747	0	98	3572391	1	1	1	ahj	bkpt.assoc.cn.change	copy.number.visual.inspection	ahj	HIGH	grey	EARLY
2060	10	123656972	123657221	10	125044365	125044596	+	+	1	130	245	53	(ahj)	10	+	123657065	0	null	CCC	10	-	125044458	0	98	1387393	1	1	1	ahj	bkpt.assoc.cn.change	copy.number.visual.inspection	ahj	HIGH	grey	EARLY
2063	10	124409276	124409729	10	124409547	124409883	-	-	8	16	44	7	(ahj)	10	-	124409635	124409634	C	null	10	+	124409701	124409702	95	66	NA	NA	NA	high.level.copy.number.region	not.assessed	NA	ahj	HIGH	grey	EARLY
2064	10	124417750	124417998	10	125343429	125343700	+	+	1	32	39	17	(ahj)	10	+	124417853	0	null	TGG	10	-	125343523	0	98	925670	1	1	0	ah	bkpt.assoc.cn.change	copy.number.visual.inspection	ah	HIGH	grey	EARLY
2065	10	124428410	124428716	10	127179631	127179944	+	-	2	52	88	24	(ahj)	10	+	124428503	0	null	GGCATCTTGTCCATGGGTAGAGTTACTCCTATA	10	+	127179852	0	99	2751349	1	1	1	ahj	bkpt.assoc.cn.change	copy.number.visual.inspection	ahj	HIGH	grey	EARLY
2066	10	124943528	124943782	10	125816283	125816718	-	-	8	60	105	25	(ahj)	10	-	124943667	0	null	GTGTGTATGTATACATAC	10	+	125816628	0	100	872961	1	1	1	ahj	bkpt.assoc.cn.change	copy.number.visual.inspection	ahj	HIGH	grey	EARLY
2068	10	125478544	125478841	10	125478706	125479072	+	+	1	30	85	0	(ah-)	10	+	125478671	125478677	TATCCA	null	10	-	125478799	125478793	95	128	1	1	0	ah	bkpt.assoc.cn.change	copy.number.visual.inspection	ah	HIGH	yellow	LATE
2071	10	125587636	125587981	10	125598426	125598769	-	+	4	0	7	0	(-h-)	10	-	125587886	0	null	GAAGTATCATAGATGATATCTGGCAACAAAGGCTGGAAATATTTAGAAAATATAGACAGAGAAAGCTGCTTA	10	-	125598486	0	98	10600	NA	NA	NA	high.level.copy.number.region	not.assessed	NA	h	HIGH	green 	LATE
2075	10	130484038	130484308	10	130775559	130775827	+	-	2	4	3	4	(ahj)	10	+	130484132	130484133	G	null	10	+	130775738	130775739	95	291606	1	1	0	ah	bkpt.assoc.cn.change	copy.number.visual.inspection	ah	HIGH	grey	EARLY
2077	10	130639621	130639921	10	131518054	131518369	+	-	2	6	8	4	(ahj)	10	+	130639718	130639719	A	null	10	+	131518262	131518263	100	878544	1	1	1	ahj	bkpt.assoc.cn.change	copy.number.visual.inspection	ahj	HIGH	grey	EARLY
2549	16	6403979	6404330	16	6910356	6910645	+	-	2	5	3	0	(ah-)	16	+	6404092	6404093	C	null	16	+	6910553	6910554	97	506461	NA	NA	NA	high.level.copy.number.region	not.assessed	NA	ah	HIGH	yellow	LATE
2552	16	7724525	7724806	16	25517617	25517909	-	-	8	12	6	2	(ahj)	16	-	7724704	0	null	null	16	+	25517815	0	100	17793111	1	1	1	ahj	bkpt.assoc.cn.change	copy.number.visual.inspection	ahj	HIGH	grey	EARLY
2553	16	7856337	7856634	16	25396424	25396695	-	+	4	5	14	1	(ahj)	16	-	7856526	0	null	ACAG	16	-	25396522	0	94	17539996	NA	NA	NA	high.level.copy.number.region	not.assessed	NA	ahj	HIGH	grey	EARLY
2554	16	8024522	8024846	16	9777248	9777544	+	-	2	6	6	5	(ahj)	16	+	8024631	0	null	null	16	+	9777448	0	100	1752817	NA	NA	NA	high.level.copy.number.region	not.assessed	NA	ahj	HIGH	grey	EARLY
2555	16	8103274	8103520	16	26056503	26056814	+	+	1	11	22	4	(ahj)	16	+	8103367	8103368	G	null	16	-	26056607	26056606	98	17953240	NA	NA	NA	high.level.copy.number.region	not.assessed	NA	ahj	HIGH	grey	EARLY
2558	16	15048297	15048589	16	67258846	67259118	+	+	1	15	24	1	(ahj)	16	+	15048393	15048394	G	null	16	-	67258938	67258937	99	52210545	NA	NA	NA	high.level.copy.number.region	not.assessed	NA	ahj	HIGH	grey	EARLY
2560	16	15188842	15189163	16	25101684	25102011	-	-	8	11	4	0	(ah-)	16	-	15189056	15189052	ACGC	null	16	+	25101912	25101916	90	9912856	NA	NA	NA	high.level.copy.number.region	not.assessed	NA	ah	HIGH	yellow	LATE
2561	16	15326266	15326513	16	27714022	27714313	+	+	1	41	50	12	(ahj)	16	+	15326354	15326357	GAG	null	16	-	27714125	27714122	68	12387771	1	1	1	ahj	bkpt.assoc.cn.change	copy.number.visual.inspection	ahj	HIGH	grey	EARLY
2563	16	16687968	16688245	16	17016450	17016742	+	-	2	9	13	3	(ahj)	16	+	16688057	0	null	null	16	+	17016647	0	94	328590	1	1	1	ahj	bkpt.assoc.cn.change	copy.number.visual.inspection	ahj	HIGH	grey	EARLY
2564	16	16850202	16850687	16	16958278	16958743	+	+	1	1	5	1	(ahj)	16	+	16850310	0	null	GTACCC	16	-	16958503	0	95	108193	1	1	1	ahj	bkpt.assoc.cn.change	copy.number.visual.inspection	ahj	HIGH	grey	EARLY
2565	16	16860478	16860795	16	17540972	17541288	-	-	8	5	8	0	(ah-)	16	-	16860683	0	null	AG	16	+	17541194	0	98	680511	NA	NA	NA	high.level.copy.number.region	not.assessed	NA	ah	HIGH	yellow	LATE
2566	16	16941975	16942218	16	51590026	51590303	-	+	4	21	24	3	(ahj)	16	-	16942176	0	null	AATACCATCTCACACCAGTTAGAATGGCCATCATTAAAAAGTCAGGAAACAACAGATGC	16	-	51590114	0	93	34647938	NA	NA	NA	high.level.copy.number.region	not.assessed	NA	ahj	HIGH	grey	EARLY
2567	16	16981581	16981853	16	52256911	52257202	+	+	1	25	27	5	(ahj)	16	+	16981682	16981683	G	null	16	-	52257007	52257006	97	35275325	NA	NA	NA	high.level.copy.number.region	not.assessed	NA	ahj	HIGH	grey	EARLY
2569	16	17024633	17024932	16	52199357	52199627	+	-	2	27	34	4	(ahj)	16	+	17024723	17024730	TAAGCCA	null	16	+	52199525	52199532	99	35174802	NA	NA	NA	high.level.copy.number.region	not.assessed	NA	ahj	HIGH	grey	EARLY
2570	16	17027244	17027530	16	52193095	52193382	-	+	4	24	39	6	(ahj)	16	-	17027433	17027432	G	null	16	-	52193191	52193190	94	35165758	NA	NA	NA	high.level.copy.number.region	not.assessed	NA	ahj	HIGH	grey	EARLY
2571	16	17166867	17167148	16	29745519	29745806	+	+	1	3	9	3	(ahj)	16	+	17166965	17166968	GTA	null	16	-	29745615	29745612	99	12578650	NA	NA	NA	high.level.copy.number.region	not.assessed	NA	ahj	HIGH	grey	EARLY
2572	16	17282681	17282986	16	33401316	33401631	+	+	1	8	12	4	(ahj)	16	+	17282783	0	null	null	16	-	33401408	0	97	16118625	NA	NA	NA	high.level.copy.number.region	not.assessed	NA	ahj	HIGH	grey	EARLY
2573	16	17640607	17640982	16	18026762	18027122	+	-	2	7	7	0	(ah-)	16	+	17640701	0	null	AACTGAAAAAAAAAAACTGAAATGTATCACGTGGGCCCCACGTGTGGT	16	+	18027012	0	98	386311	1	1	0	ah	bkpt.assoc.cn.change	copy.number.visual.inspection	ah	HIGH	yellow	LATE
2576	16	20359289	20359625	16	20366783	20367095	+	+	1	7	6	2	(ahj)	16	+	20359425	20359426	T	null	16	-	20366884	20366883	97	7459	NA	NA	NA	high.level.copy.number.region	not.assessed	NA	ahj	HIGH	grey	EARLY
2581	16	22848611	22848902	16	31174131	31174419	-	-	8	20	15	4	(ahj)	16	-	22848804	0	null	GTT	16	+	31174323	0	100	8325519	NA	NA	NA	high.level.copy.number.region	not.assessed	NA	ahj	HIGH	grey	EARLY
2587	16	24045848	24046162	16	27086238	27086596	+	+	1	0	7	0	(-h-)	16	+	24045944	0	null	null	16	-	27086336	0	98	3040392	NA	NA	NA	high.level.copy.number.region	not.assessed	NA	h	HIGH	green	LATE
2589	16	25451865	25452094	16	67261446	67261728	+	-	2	10	19	11	(ahj)	16	+	25451956	25451957	A	null	16	+	67261620	67261621	98	41809664	NA	NA	NA	high.level.copy.number.region	not.assessed	NA	ahj	HIGH	grey	EARLY
2590	16	25661532	25661764	16	26074141	26074370	+	-	2	8	16	2	(ahj)	16	+	25661621	25661623	AA	null	16	+	26074277	26074279	98	412656	NA	NA	NA	high.level.copy.number.region	not.assessed	NA	ahj	HIGH	grey	EARLY
2592	16	26042559	26042929	16	32946389	32946790	+	+	1	23	22	5	(ahj)	16	+	26042651	0	null	GA	16	-	32946571	0	99	6903920	NA	NA	NA	high.level.copy.number.region	not.assessed	NA	ahj	HIGH	grey	EARLY
2593	16	26045111	26045435	16	69961881	69962240	-	+	4	14	11	3	(ahj)	16	-	26045315	0	null	null	16	-	69961974	0	99	43916659	1	1	0	ah	bkpt.assoc.cn.change	copy.number.visual.inspection	ah	HIGH	grey	EARLY
2595	16	26864931	26865243	16	65748901	65749184	-	-	8	8	9	6	(ahj)	16	-	26865147	0	null	null	16	+	65749092	0	98	38883945	NA	NA	NA	high.level.copy.number.region	not.assessed	NA	ahj	HIGH	grey	EARLY
2597	16	27537288	27537737	16	32632507	32632971	+	-	2	7	6	3	(ahj)	16	+	27537521	27537523	CT	null	16	+	32632876	32632878	97	5095355	1	1	0	ah	bkpt.assoc.cn.change	copy.number.visual.inspection	ah	HIGH	grey	EARLY
2598	16	27567283	27567553	16	46885405	46885651	-	-	8	57	71	8	(ahj)	16	-	27567457	27567456	T	null	16	+	46885557	46885558	100	19318100	1	1	1	ahj	bkpt.assoc.cn.change	copy.number.visual.inspection	ahj	HIGH	grey	EARLY
2599	16	27568847	27569116	16	31235607	31235893	+	+	1	13	5	10	(ahj)	16	+	27568967	27568968	C	null	16	-	31235696	31235695	99	3666729	1	1	1	ahj	bkpt.assoc.cn.change	copy.number.visual.inspection	ahj	HIGH	grey	EARLY
2600	16	27568934	27569236	16	46857011	46857242	-	-	8	57	91	11	(ahj)	16	-	27569141	27569137	ATTT	null	16	+	46857148	46857152	99	19288007	1	1	1	ahj	bkpt.assoc.cn.change	copy.number.visual.inspection	ahj	HIGH	grey	EARLY
2602	16	27813462	27813896	16	27813740	27814240	+	+	1	3	7	3	(ahj)	16	+	27813702	27813703	C	null	16	-	27813843	27813842	95	141	1	1	1	ahj	bkpt.assoc.cn.change	copy.number.visual.inspection	ahj	HIGH	grey	EARLY
2606	16	28280076	28280330	16	68252563	68253013	+	+	1	2	4	3	(ahj)	16	+	28280204	28280208	CCCA	null	16	-	68252745	68252741	98	39972541	1	1	1	ahj	bkpt.assoc.cn.change	copy.number.visual.inspection	ahj	HIGH	grey	EARLY
2607	16	32922417	32922875	16	33476507	33476852	-	-	8	4	6	3	(ahj)	16	-	32922781	32922775	CACACA	null	16	+	33476679	33476685	97	553898	1	1	1	ahj	bkpt.assoc.cn.change	copy.number.visual.inspection	ahj	HIGH	grey	EARLY
2609	16	34218396	34218688	16	34315613	34315899	+	-	2	16	17	7	(ahj)	16	+	34218490	34218491	G	null	16	+	34315798	34315799	95	97308	1	1	1	ahj	bkpt.assoc.cn.change	copy.number.visual.inspection	ahj	HIGH	grey	EARLY
2610	16	34315611	34315877	16	34320354	34320585	+	+	1	29	48	14	(ahj)	16	+	34315699	34315703	CTTA	null	16	-	34320446	34320442	100	4747	NA	NA	NA	high.level.copy.number.region	not.assessed	NA	ahj	HIGH	grey	EARLY
2611	16	46858906	46859190	16	46891014	46891333	+	+	1	18	23	12	(ahj)	16	+	46859018	0	null	null	16	-	46891109	0	95	32091	1	1	0	ah	bkpt.assoc.cn.change	copy.number.visual.inspection	ah	HIGH	grey	EARLY
2614	16	51442598	51442883	16	52036759	52037008	-	-	8	21	35	7	(ahj)	16	-	51442788	0	null	null	16	+	52036905	0	98	594117	NA	NA	NA	high.level.copy.number.region	not.assessed	NA	ahj	HIGH	grey	EARLY
2642	16	65174877	65175115	16	65212764	65213025	+	-	2	13	19	3	(ahj)	16	+	65174970	65174974	ACAT	null	16	+	65212922	65212926	97	37952	1	1	1	ahj	bkpt.assoc.cn.change	copy.number.visual.inspection	ahj	HIGH	grey	EARLY
2643	16	65438850	65439189	16	65524363	65524642	+	-	2	4	7	3	(ahj)	16	+	65438953	0	null	CAGCTGGTGATGTGATCCACA	16	+	65524544	0	100	85591	1	1	1	ahj	bkpt.assoc.cn.change	copy.number.visual.inspection	ahj	HIGH	grey	EARLY
2840	20	14594911	14595275	20	15025415	15025783	+	-	2	0	5	0	(-h-)	20	+	14595047	14595048	C	null	20	+	15025672	15025673	100	430625	1	1	0	ah	bkpt.assoc.cn.change	copy.number.visual.inspection	ah	HIGH	yellow	LATE
2845	20	14857077	14857385	20	15037640	15037921	+	-	2	13	11	3	(ahj)	20	+	14857164	14857166	AC	null	20	+	15037807	15037809	99	180643	1	1	0	ah	bkpt.assoc.cn.change	copy.number.visual.inspection	ah	HIGH	grey	EARLY
2945	X	2806045	2806311	X	39364849	39365204	-	+	4	13	6	1	(ahj)	X	-	2806215	2806213	GA	null	X	-	39364951	39364949	99	36558736	NA	NA	NA	high.level.copy.number.region	not.assessed	NA	ahj	HIGH	grey	EARLY
2946	X	2929223	2929568	X	3895511	3895886	+	+	1	4	6	2	(ahj)	X	+	2929373	2929375	TC	null	X	-	3895630	3895628	100	966257	1	1	1	ahj	bkpt.assoc.cn.change	copy.number.visual.inspection	ahj	HIGH	grey	EARLY
2948	X	2939731	2940097	X	17549294	17549606	+	-	2	5	8	0	(ah-)	X	+	2939846	2939847	C	null	X	+	17549490	17549491	97	14609644	1	1	1	ahj	bkpt.assoc.cn.change	copy.number.visual.inspection	ahj	HIGH	grey	EARLY
2949	X	2939706	2939989	X	4002259	4002548	-	-	8	8	6	4	(ahj)	X	-	2939887	2939884	AGC	null	X	+	4002453	4002456	99	1062566	1	1	1	ahj	bkpt.assoc.cn.change	copy.number.visual.inspection	ahj	HIGH	grey	EARLY
2950	X	2940453	2940761	X	7583238	7583507	+	+	1	7	3	5	(ahj)	X	+	2940542	2940546	ACAA	null	X	-	7583333	7583329	99	4642791	1	1	1	ahj	bkpt.assoc.cn.change	copy.number.visual.inspection	ahj	HIGH	grey	EARLY
2951	X	2940537	2940850	X	18269722	18270049	-	+	4	9	5	5	(ahj)	X	-	2940762	2940757	AGACT	null	X	-	18269837	18269832	75	15329075	NA	NA	NA	high.level.copy.number.region	not.assessed	NA	ahj	HIGH	grey	EARLY
2952	X	2950759	2951118	X	19719286	19719603	+	-	2	3	7	4	(ahj)	X	+	2950885	2950888	GTG	null	X	+	19719500	19719503	88	16768615	1	1	1	ahj	bkpt.assoc.cn.change	copy.number.visual.inspection	ahj	HIGH	grey	EARLY
2954	X	2973039	2973381	X	39306858	39307238	-	-	8	7	3	3	(ahj)	X	-	2973275	2973273	AG	null	X	+	39307135	39307137	98	36333860	1	1	1	ahj	bkpt.assoc.cn.change	copy.number.visual.inspection	ahj	HIGH	grey	EARLY
2955	X	2977286	2977586	X	36199433	36199760	+	+	1	14	9	0	(ah-)	X	+	2977382	2977383	A	null	X	-	36199534	36199533	95	33222152	1	1	1	ahj	bkpt.assoc.cn.change	copy.number.visual.inspection	ahj	HIGH	grey	EARLY
2956	X	2977270	2977709	X	19552974	19553295	-	-	8	4	5	3	(ahj)	X	-	2977603	2977600	CCA	null	X	+	19553172	19553175	100	16575569	1	1	1	ahj	bkpt.assoc.cn.change	copy.number.visual.inspection	ahj	HIGH	grey	EARLY
2958	X	2977714	2978096	X	4038271	4038698	-	+	4	6	5	0	(ah-)	X	-	2977944	2977943	T	null	X	-	4038404	4038403	100	1060460	1	1	0	ah	bkpt.assoc.cn.change	copy.number.visual.inspection	ah	HIGH	yellow	LATE
2959	X	2999755	3000060	X	39286821	39287099	+	-	2	11	11	7	(ahj)	X	+	2999851	2999853	TA	null	X	+	39287001	39287003	99	36287150	1	1	0	ah	bkpt.assoc.cn.change	copy.number.visual.inspection	ah	HIGH	grey	EARLY
2960	X	3010840	3011085	X	3890513	3890776	+	-	2	13	11	5	(ahj)	X	+	3010932	0	null	null	X	+	3890685	0	100	879753	1	1	1	ahj	bkpt.assoc.cn.change	copy.number.visual.inspection	ahj	HIGH	grey	EARLY
2961	X	3028716	3029051	X	8362220	8362549	-	+	4	13	12	2	(ahj)	X	-	3028926	3028924	AC	null	X	-	8362338	8362336	95	5333412	1	1	1	ahj	bkpt.assoc.cn.change	copy.number.visual.inspection	ahj	HIGH	grey	EARLY
2962	X	3031713	3032022	X	39960250	39960585	+	+	1	12	7	1	(ahj)	X	+	3031812	3031816	CCCC	null	X	-	39960340	39960336	91	36928528	1	1	0	ah	bkpt.assoc.cn.change	copy.number.visual.inspection	ah	HIGH	grey	EARLY
2963	X	3031775	3032059	X	7575179	7575513	-	-	8	16	6	3	(ahj)	X	-	3031945	3031943	CA	null	X	+	7575413	7575415	98	4543468	NA	NA	NA	high.level.copy.number.region	not.assessed	NA	ahj	HIGH	grey	EARLY
2964	X	3035622	3035929	X	4553292	4553615	+	+	1	8	13	5	(ahj)	X	+	3035736	3035738	TG	null	X	-	4553387	4553385	90	1517651	NA	NA	NA	high.level.copy.number.region	not.assessed	NA	ahj	HIGH	grey	EARLY
2965	X	3058813	3059146	X	36220613	36220899	-	-	8	5	7	3	(ahj)	X	-	3059038	3059035	CCA	null	X	+	36220797	36220800	100	33161759	NA	NA	NA	high.level.copy.number.region	not.assessed	NA	ahj	HIGH	grey	EARLY
2966	X	3061340	3061616	X	17572711	17572999	+	-	2	9	7	3	(ahj)	X	+	3061449	3061451	TG	null	X	+	17572897	17572899	99	14511448	1	1	1	ahj	bkpt.assoc.cn.change	copy.number.visual.inspection	ahj	HIGH	grey	EARLY
2967	X	3068445	3068696	X	42314164	42314452	-	-	8	6	7	4	(ahj)	X	-	3068600	3068598	TG	null	X	+	42314359	42314361	99	39245759	NA	NA	NA	high.level.copy.number.region	not.assessed	NA	ahj	HIGH	grey	EARLY
2968	X	3069032	3069332	X	8294479	8294781	+	+	1	14	9	2	(ahj)	X	+	3069130	3069133	TCA	null	X	-	8294583	8294580	74	5225453	NA	NA	NA	high.level.copy.number.region	not.assessed	NA	ahj	HIGH	grey	EARLY
2969	X	3069805	3070084	X	5417347	5417644	-	+	4	10	9	2	(ahj)	X	-	3069984	3069983	T	null	X	-	5417443	5417442	98	2347459	NA	NA	NA	high.level.copy.number.region	not.assessed	NA	ahj	HIGH	grey	EARLY
2970	X	3073042	3073319	X	7584974	7585335	+	-	2	7	12	2	(ahj)	X	+	3073132	3073133	T	null	X	+	7585243	7585244	68	4512111	NA	NA	NA	high.level.copy.number.region	not.assessed	NA	ahj	HIGH	grey	EARLY
2972	X	3086175	3086480	X	4503482	4503772	-	-	8	10	15	3	(ahj)	X	-	3086376	3086374	TT	null	X	+	4503678	4503680	98	1417302	NA	NA	NA	high.level.copy.number.region	not.assessed	NA	ahj	HIGH	grey	EARLY
2971	X	3086679	3086983	X	5442586	5442890	+	+	1	5	6	5	(ahj)	X	+	3086769	3086775	GAATTC	null	X	-	5442707	5442701	89	2355938	NA	NA	NA	high.level.copy.number.region	not.assessed	NA	ahj	HIGH	grey	EARLY
2973	X	3857759	3858085	X	8694483	8694829	-	+	4	19	12	3	(ahj)	X	-	3857957	3857955	GG	null	X	-	8694579	8694577	95	4836622	1	1	1	ahj	bkpt.assoc.cn.change	copy.number.visual.inspection	ahj	HIGH	grey	EARLY
2974	X	3890548	3890959	X	8294538	8294908	+	-	2	11	4	0	(ah-)	X	+	3890646	3890648	AA	null	X	+	8294736	8294738	100	4404090	1	1	1	ahj	bkpt.assoc.cn.change	copy.number.visual.inspection	ahj	HIGH	grey	EARLY
2976	X	3920041	3920365	X	18174119	18174422	-	+	4	9	7	2	(ahj)	X	-	3920252	3920247	GCACT	null	X	-	18174222	18174217	95	14253970	1	1	1	ahj	bkpt.assoc.cn.change	copy.number.visual.inspection	ahj	HIGH	grey	EARLY
2975	X	3920537	3920870	X	18287735	18288088	+	-	2	14	9	2	(ahj)	X	+	3920628	3920629	A	null	X	+	18287986	18287987	95	14367358	1	1	1	ahj	bkpt.assoc.cn.change	copy.number.visual.inspection	ahj	HIGH	grey	EARLY
2977	X	3921204	3921487	X	8295567	8295872	-	+	4	16	6	4	(ahj)	X	-	3921394	3921393	G	null	X	-	8295675	8295674	95	4374281	NA	NA	NA	high.level.copy.number.region	not.assessed	NA	ahj	HIGH	grey	EARLY
2978	X	3929425	3929746	X	7558798	7559102	+	-	2	12	16	1	(ahj)	X	+	3929514	3929516	TG	null	X	+	7559000	7559002	100	3629486	1	1	0	ah	bkpt.assoc.cn.change	copy.number.visual.inspection	ah	HIGH	grey	EARLY
2979	X	3947507	3947797	X	8310516	8310808	+	-	2	10	17	3	(ahj)	X	+	3947602	0	null	null	X	+	8310706	0	100	4363104	NA	NA	NA	high.level.copy.number.region	not.assessed	NA	ahj	HIGH	grey	EARLY
2980	X	3955846	3956123	X	19568623	19568932	+	+	1	16	9	3	(ahj)	X	+	3955954	3955957	CCT	null	X	-	19568723	19568720	100	15612769	NA	NA	NA	high.level.copy.number.region	not.assessed	NA	ahj	HIGH	grey	EARLY
2981	X	3974587	3974871	X	39930128	39930417	-	+	4	7	8	0	(ah-)	X	-	3974776	0	null	null	X	-	39930233	0	95	35955457	NA	NA	NA	high.level.copy.number.region	not.assessed	NA	ah	HIGH	yellow	LATE
2982	X	3978396	3978674	X	5313871	5314197	+	+	1	12	8	4	(ahj)	X	+	3978504	3978506	AA	null	X	-	5313977	5313975	94	1335473	NA	NA	NA	high.level.copy.number.region	not.assessed	NA	ahj	HIGH	grey	EARLY
2984	X	4494994	4495370	X	7759995	7760387	-	+	4	12	1	2	(ahj)	X	-	4495248	4495247	C	null	X	-	7760112	7760111	99	3264864	NA	NA	NA	high.level.copy.number.region	not.assessed	NA	ahj	HIGH	grey	EARLY
2985	X	4508689	4508959	X	18180222	18180502	+	+	1	9	14	4	(ahj)	X	+	4508786	4508787	G	null	X	-	18180317	18180316	92	13671531	NA	NA	NA	high.level.copy.number.region	not.assessed	NA	ahj	HIGH	grey	EARLY
2986	X	4510868	4511112	X	8315589	8315924	-	+	4	16	11	4	(ahj)	X	-	4511012	4511010	GA	null	X	-	8315700	8315698	94	3804688	1	1	1	ahj	bkpt.assoc.cn.change	copy.number.visual.inspection	ahj	HIGH	grey	EARLY
2987	X	4515703	4515998	X	18161349	18161636	+	-	2	9	11	3	(ahj)	X	+	4515810	4515811	A	null	X	+	18161537	18161538	96	13645727	NA	NA	NA	high.level.copy.number.region	not.assessed	NA	ahj	HIGH	grey	EARLY
2988	X	4537298	4537654	X	4556364	4556753	-	+	4	10	7	1	(ahj)	X	-	4537518	4537515	CAG	null	X	-	4556482	4556479	99	18964	NA	NA	NA	high.level.copy.number.region	not.assessed	NA	ahj	HIGH	grey	EARLY
2989	X	4545312	4545619	X	42327561	42327906	+	+	1	9	12	3	(ahj)	X	+	4545436	0	null	null	X	-	42327657	0	100	37782221	NA	NA	NA	high.level.copy.number.region	not.assessed	NA	ahj	HIGH	grey	EARLY
2990	X	4546317	4546636	X	19535473	19535783	-	-	8	13	7	4	(ahj)	X	-	4546527	0	null	AG	X	+	19535687	0	100	14989160	NA	NA	NA	high.level.copy.number.region	not.assessed	NA	ahj	HIGH	grey	EARLY
2991	X	4555866	4556261	X	18287258	18287625	-	-	8	7	9	1	(ahj)	X	-	4556173	0	null	TGCACAAAAATATACAGGTGTGAAGAGAAAGAGTTGGTGGTGAGGAGGGATAAAGGTAATGATCTGAATGTTTAAAAAAAAAAAA	X	+	18287530	0	79	13731357	NA	NA	NA	high.level.copy.number.region	not.assessed	NA	ahj	HIGH	grey	EARLY
2992	X	4557176	4557444	X	18171343	18171613	-	-	8	15	14	2	(ahj)	X	-	4557358	4557353	TGGGA	null	X	+	18171517	18171522	97	13614159	NA	NA	NA	high.level.copy.number.region	not.assessed	NA	ahj	HIGH	grey	EARLY
2993	X	4593052	4593371	X	42344749	42345074	-	-	8	17	11	3	(ahj)	X	-	4593251	0	null	null	X	+	42344984	0	95	37751733	1	1	0	ah	bkpt.assoc.cn.change	copy.number.visual.inspection	ah	HIGH	grey	EARLY
2994	X	4594387	4594738	X	7460638	7460987	+	-	2	9	10	3	(ahj)	X	+	4594522	4594523	A	null	X	+	7460892	7460893	99	2866370	1	1	1	ahj	bkpt.assoc.cn.change	copy.number.visual.inspection	ahj	HIGH	grey	EARLY
2996	X	5301653	5301912	X	19550976	19551313	-	+	4	11	9	4	(ahj)	X	-	5301814	5301811	ACA	null	X	-	19551090	19551087	96	14249276	1	1	1	ahj	bkpt.assoc.cn.change	copy.number.visual.inspection	ahj	HIGH	grey	EARLY
2995	X	5302319	5302584	X	17533037	17533289	+	-	2	10	11	1	(ahj)	X	+	5302409	5302411	AG	null	X	+	17533180	17533182	100	12230771	1	1	1	ahj	bkpt.assoc.cn.change	copy.number.visual.inspection	ahj	HIGH	grey	EARLY
2997	X	5305564	5305841	X	5417538	5417875	-	-	8	9	15	1	(ahj)	X	-	5305747	5305745	GG	null	X	+	5417743	5417745	99	111996	1	1	1	ahj	bkpt.assoc.cn.change	copy.number.visual.inspection	ahj	HIGH	grey	EARLY
2998	X	5321275	5321584	X	8307179	8307473	-	-	8	11	4	1	(ahj)	X	-	5321475	0	null	null	X	+	8307368	0	100	2985893	NA	NA	NA	high.level.copy.number.region	not.assessed	NA	ahj	HIGH	grey	EARLY
2999	X	5341873	5342175	X	7623170	7623437	+	-	2	9	13	1	(ahj)	X	+	5341971	5341973	CT	null	X	+	7623321	7623323	100	2281350	1	1	1	ahj	bkpt.assoc.cn.change	copy.number.visual.inspection	ahj	HIGH	grey	EARLY
3000	X	5409323	5409442	X	42298495	42298733	-	+	4	9	5	6	(ahj)	X	-	5409352	5409348	TTTT	null	X	-	42298617	42298613	99	36889265	NA	NA	NA	high.level.copy.number.region	not.assessed	NA	ahj	HIGH	grey	EARLY
3005	X	7564197	7564513	X	8714375	8714711	+	-	2	8	15	2	(ahj)	X	+	7564303	7564309	GGAAAA	null	X	+	8714610	8714616	100	1150307	1	1	1	ahj	bkpt.assoc.cn.change	copy.number.visual.inspection	ahj	HIGH	grey	EARLY
3006	X	7623123	7623395	X	36262603	36262867	+	+	1	11	21	2	(ahj)	X	+	7623216	7623219	CTC	null	X	-	36262704	36262701	100	28639488	NA	NA	NA	high.level.copy.number.region	not.assessed	NA	ahj	HIGH	grey	EARLY
3007	X	7676216	7676557	X	19621069	19621439	+	-	2	9	9	2	(ahj)	X	+	7676306	0	null	GAGCCCAGGAGTTCGAGACCAGCCTGGGCAACAGAGCAAGACTCTGCCTCTACAAAAAAGTTAAAAATCAGCCGGGCA	X	+	19621350	0	100	11945044	1	1	0	ah	bkpt.assoc.cn.change	copy.number.visual.inspection	ah	HIGH	grey	EARLY
3008	X	7749994	7750285	X	39319531	39319838	-	+	4	9	5	4	(ahj)	X	-	7750197	7750192	AGGCA	null	X	-	39319631	39319626	100	31569434	1	1	1	ahj	bkpt.assoc.cn.change	copy.number.visual.inspection	ahj	HIGH	grey	EARLY
3009	X	7784360	7784757	X	19564236	19564609	+	+	1	9	7	2	(ahj)	X	+	7784489	7784491	AA	null	X	-	19564376	19564374	100	11779887	1	1	0	ah	bkpt.assoc.cn.change	copy.number.visual.inspection	ah	HIGH	grey	EARLY
3010	X	8293521	8293902	X	17594284	17594376	-	+	4	10	7	1	(ahj)	X	-	8293767	0	null	null	X	-	17594405	0	100	9300638	1	1	0	ah	bkpt.assoc.cn.change	copy.number.visual.inspection	ah	HIGH	grey	EARLY
3011	X	8305699	8305993	X	39955404	39955679	-	-	8	8	3	3	(ahj)	X	-	8305898	8305896	CA	null	X	+	39955577	39955579	93	31649679	1	1	1	ahj	bkpt.assoc.cn.change	copy.number.visual.inspection	ahj	HIGH	grey	EARLY
3012	X	8307022	8307313	X	19649514	19649813	+	-	2	16	11	4	(ahj)	X	+	8307117	0	null	null	X	+	19649719	0	100	11342602	1	1	1	ahj	bkpt.assoc.cn.change	copy.number.visual.inspection	ahj	HIGH	grey	EARLY
3013	X	8310290	8310648	X	36163850	36164151	+	-	2	16	8	3	(ahj)	X	+	8310382	0	null	null	X	+	36164055	0	95	27853673	NA	NA	NA	high.level.copy.number.region	not.assessed	NA	ahj	HIGH	grey	EARLY
3014	X	8317721	8318018	X	42354356	42354658	-	+	4	8	11	1	(ahj)	X	-	8317910	8317908	GG	null	X	-	42354449	42354447	99	34036539	1	1	1	ahj	bkpt.assoc.cn.change	copy.number.visual.inspection	ahj	HIGH	grey	EARLY
3016	X	8341187	8341542	X	39918190	39918570	-	+	4	4	3	1	(ahj)	X	-	8341422	8341420	TA	null	X	-	39918295	39918293	99	31576873	1	1	1	ahj	bkpt.assoc.cn.change	copy.number.visual.inspection	ahj	HIGH	grey	EARLY
3017	X	8346415	8346722	X	19643483	19643821	-	-	8	10	7	6	(ahj)	X	-	8346621	0	null	null	X	+	19643727	0	90	11297106	NA	NA	NA	high.level.copy.number.region	not.assessed	NA	ahj	HIGH	grey	EARLY
3019	X	8692403	8692636	X	42322851	42322953	-	-	8	12	15	4	(ahj)	X	-	8692541	8692538	GGA	null	X	+	42322858	42322861	100	33630317	1	1	1	ahj	bkpt.assoc.cn.change	copy.number.visual.inspection	ahj	HIGH	grey	EARLY
3020	X	8699326	8699657	X	17501561	17501865	+	-	2	3	4	4	(ahj)	X	+	8699428	8699430	GG	null	X	+	17501746	17501748	99	8802318	1	1	1	ahj	bkpt.assoc.cn.change	copy.number.visual.inspection	ahj	HIGH	grey	EARLY
3021	X	8715746	8716141	X	36165244	36165571	+	+	1	6	4	1	(ahj)	X	+	8715873	8715876	ATG	null	X	-	36165349	36165346	99	27449476	NA	NA	NA	high.level.copy.number.region	not.assessed	NA	ahj	HIGH	grey	EARLY
3022	X	10993857	10994320	X	18596886	18597293	-	-	8	4	7	2	(ahj)	X	-	10994225	10994223	CA	null	X	+	18597114	18597116	99	7602889	1	1	1	ahj	bkpt.assoc.cn.change	copy.number.visual.inspection	ahj	HIGH	grey	EARLY
3023	X	10995223	10995472	X	36714442	36714714	+	-	2	13	5	6	(ahj)	X	+	10995314	10995316	TG	null	X	+	36714612	36714614	95	25719298	NA	NA	NA	high.level.copy.number.region	not.assessed	NA	ahj	HIGH	grey	EARLY
3024	X	10995223	10995482	X	36714135	36714413	-	+	4	14	14	4	(ahj)	X	-	10995384	10995383	A	null	X	-	36714229	36714228	84	25718845	NA	NA	NA	high.level.copy.number.region	not.assessed	NA	ahj	HIGH	grey	EARLY
3025	X	11001210	11001496	X	36748364	36748644	+	+	1	12	12	3	(ahj)	X	+	11001298	0	null	GTCCC	X	-	36748462	0	94	25747164	1	1	1	ahj	bkpt.assoc.cn.change	copy.number.visual.inspection	ahj	HIGH	grey	EARLY
3026	X	11001199	11001525	X	18645364	18645708	-	+	4	9	12	1	(ahj)	X	-	11001421	0	null	null	X	-	18645458	0	79	7644037	NA	NA	NA	high.level.copy.number.region	not.assessed	NA	ahj	HIGH	grey	EARLY
3034	X	17290231	17290511	X	17290718	17291037	-	-	8	14	11	1	(ahj)	X	-	17290418	17290415	ATT	null	X	+	17290943	17290946	82	525	1	1	0	ah	bkpt.assoc.cn.change	copy.number.visual.inspection	ah	HIGH	grey	EARLY
3035	X	17445952	17446270	X	42354465	42354740	+	-	2	10	7	4	(ahj)	X	+	17446036	17446040	CTGA	null	X	+	42354638	42354642	95	24908602	1	1	1	ahj	bkpt.assoc.cn.change	copy.number.visual.inspection	ahj	HIGH	grey	EARLY
3036	X	17523464	17523847	X	19567459	19567715	+	-	2	10	6	1	(ahj)	X	+	17523573	17523575	TG	null	X	+	19567605	19567607	92	2044032	1	1	1	ahj	bkpt.assoc.cn.change	copy.number.visual.inspection	ahj	HIGH	grey	EARLY
3037	X	17544657	17544939	X	39916394	39916681	+	-	2	6	7	3	(ahj)	X	+	17544746	17544749	GGG	null	X	+	39916584	39916587	100	22371838	NA	NA	NA	high.level.copy.number.region	not.assessed	NA	ahj	HIGH	grey	EARLY
3038	X	17554080	17554431	X	18246536	18246867	+	-	2	9	4	7	(ahj)	X	+	17554177	0	null	null	X	+	18246749	0	96	692572	1	1	1	ahj	bkpt.assoc.cn.change	copy.number.visual.inspection	ahj	HIGH	grey	EARLY
3039	X	17564744	17565113	X	18235520	18235957	-	-	8	4	2	2	(ahj)	X	-	17564907	17564904	AAT	null	X	+	18235858	18235861	65	670951	NA	NA	NA	high.level.copy.number.region	not.assessed	NA	ahj	HIGH	grey	EARLY
3040	X	17572512	17572849	X	19623044	19623348	+	+	1	7	9	4	(ahj)	X	+	17572604	0	null	null	X	-	19623160	0	100	2050556	NA	NA	NA	high.level.copy.number.region	not.assessed	NA	ahj	HIGH	grey	EARLY
3041	X	17581733	17582021	X	19661490	19661853	+	+	1	9	6	4	(ahj)	X	+	17581846	17581849	AGG	null	X	-	19661582	19661579	95	2079736	NA	NA	NA	high.level.copy.number.region	not.assessed	NA	ahj	HIGH	grey	EARLY
3042	X	18163176	18163460	X	36226849	36227140	+	-	2	10	8	1	(ahj)	X	+	18163263	18163265	CC	null	X	+	36227041	36227043	97	18063778	1	1	1	ahj	bkpt.assoc.cn.change	copy.number.visual.inspection	ahj	HIGH	grey	EARLY
3043	X	18188054	18188332	X	19608305	19608615	-	+	4	11	9	1	(ahj)	X	-	18188232	18188229	TGC	null	X	-	19608398	19608395	75	1420166	1	1	0	ah	bkpt.assoc.cn.change	copy.number.visual.inspection	ah	HIGH	grey	EARLY
3044	X	18241961	18242240	X	39970981	39971281	+	+	1	8	8	3	(ahj)	X	+	18242053	18242054	G	null	X	-	39971089	39971088	96	21729036	1	1	0	ah	bkpt.assoc.cn.change	copy.number.visual.inspection	ah	HIGH	grey	EARLY
3045	X	18256548	18256847	X	39372256	39372611	-	+	4	6	2	4	(ahj)	X	-	18256750	18256749	T	null	X	-	39372362	39372361	99	21115612	1	1	1	ahj	bkpt.assoc.cn.change	copy.number.visual.inspection	ahj	HIGH	grey	EARLY
3047	X	18287407	18287426	X	19646349	19646641	+	+	1	9	12	4	(ahj)	X	+	18287498	18287499	T	null	X	-	19646440	19646439	100	1358942	1	1	1	ahj	bkpt.assoc.cn.change	copy.number.visual.inspection	ahj	HIGH	grey	EARLY
3048	X	18290893	18291184	X	42297884	42298199	+	-	2	12	15	1	(ahj)	X	+	18290981	18290982	C	null	X	+	42298087	42298088	100	24007106	1	1	1	ahj	bkpt.assoc.cn.change	copy.number.visual.inspection	ahj	HIGH	grey	EARLY
3051	X	18595306	18595628	X	38208084	38208375	+	-	2	9	3	1	(ahj)	X	+	18595427	18595432	AACTC	null	X	+	38208272	38208277	99	19612845	1	1	1	ahj	bkpt.assoc.cn.change	copy.number.visual.inspection	ahj	HIGH	grey	EARLY
3055	X	19558672	19558987	X	42290212	42290531	-	+	4	12	7	4	(ahj)	X	-	19558888	19558886	CA	null	X	-	42290308	42290306	98	22731420	NA	NA	NA	high.level.copy.number.region	not.assessed	NA	ahj	HIGH	grey	EARLY
3056	X	19609666	19610044	X	19716478	19716949	+	-	2	9	5	3	(ahj)	X	+	19609842	19609846	TAAG	null	X	+	19716853	19716857	100	107011	NA	NA	NA	high.level.copy.number.region	not.assessed	NA	ahj	HIGH	grey	EARLY
3058	X	19656842	19657164	X	42305427	42305725	+	-	2	13	8	1	(ahj)	X	+	19656939	19656942	TCT	null	X	+	42305621	42305624	100	22648682	NA	NA	NA	high.level.copy.number.region	not.assessed	NA	ahj	HIGH	grey	EARLY
3059	X	19661005	19661346	X	39969099	39969360	-	-	8	7	8	1	(ahj)	X	-	19661249	19661248	T	null	X	+	39969251	39969252	89	20308002	NA	NA	NA	high.level.copy.number.region	not.assessed	NA	ahj	HIGH	grey	EARLY
3060	X	19694020	19694330	X	39913787	39914128	-	-	8	13	9	2	(ahj)	X	-	19694224	0	null	null	X	+	39914024	0	100	20219800	NA	NA	NA	high.level.copy.number.region	not.assessed	NA	ahj	HIGH	grey	EARLY
3061	X	19698378	19698721	X	36255494	36255783	+	-	2	10	11	1	(ahj)	X	+	19698473	0	null	null	X	+	36255666	0	93	16557193	NA	NA	NA	high.level.copy.number.region	not.assessed	NA	ahj	HIGH	grey	EARLY
3063	X	19716984	19717450	X	42323289	42323639	+	+	1	6	10	0	(ah-)	X	+	19717074	19717075	A	null	X	-	42323516	42323515	99	22606442	NA	NA	NA	high.level.copy.number.region	not.assessed	NA	ah	HIGH	yellow	LATE
3070	X	24973424	24973721	X	57786785	57787074	-	-	8	15	7	5	(ahj)	X	-	24973619	0	null	null	X	+	57786971	0	98	32813352	1	1	1	ahj	bkpt.assoc.cn.change	copy.number.visual.inspection	ahj	HIGH	grey	EARLY
3071	X	24991773	24992074	X	43131460	43131791	+	+	1	10	9	4	(ahj)	X	+	24991871	24991874	GGC	null	X	-	43131553	43131550	75	18139682	NA	NA	NA	high.level.copy.number.region	not.assessed	NA	ahj	HIGH	grey	EARLY
3074	X	26760686	26761020	X	48070525	48070836	-	-	8	8	8	1	(ahj)	X	-	26760928	26760927	T	null	X	+	48070704	48070705	99	21309776	NA	NA	NA	high.level.copy.number.region	not.assessed	NA	ahj	HIGH	grey	EARLY
3075	X	26786418	26786720	X	43094648	43094983	+	-	2	7	4	2	(ahj)	X	+	26786528	26786529	C	null	X	+	43094879	43094880	85	16308351	NA	NA	NA	high.level.copy.number.region	not.assessed	NA	ahj	HIGH	grey	EARLY
3087	X	36133326	36133655	X	39298242	39298520	-	+	4	12	5	2	(ahj)	X	-	36133558	36133557	A	null	X	-	39298344	39298343	100	3164786	NA	NA	NA	high.level.copy.number.region	not.assessed	NA	ahj	HIGH	grey	EARLY
3088	X	36135228	36135573	X	39254884	39255220	+	+	1	12	9	3	(ahj)	X	+	36135343	0	null	null	X	-	39254985	0	99	3119642	NA	NA	NA	high.level.copy.number.region	not.assessed	NA	ahj	HIGH	grey	EARLY
3090	X	39368868	39369258	X	39915427	39915833	-	+	4	7	5	0	(ah-)	X	-	39369163	0	null	null	X	-	39915622	0	98	546459	NA	NA	NA	high.level.copy.number.region	not.assessed	NA	ah	HIGH	yellow	LATE
3092	X	39909403	39909722	X	42325780	42326063	-	-	8	4	7	5	(ahj)	X	-	39909620	0	null	null	X	+	42325943	0	85	2416323	NA	NA	NA	high.level.copy.number.region	not.assessed	NA	ahj	HIGH	grey	EARLY
3093	X	39918187	39918469	X	42346302	42346564	-	+	4	16	6	1	(ahj)	X	-	39918377	39918375	AT	null	X	-	42346395	42346393	95	2428018	NA	NA	NA	high.level.copy.number.region	not.assessed	NA	ahj	HIGH	grey	EARLY
3096	X	42289624	42290044	X	42355008	42355426	-	+	4	0	4	1	(-hj)	X	-	42289849	42289846	TTT	null	X	-	42355111	42355108	100	65262	NA	NA	NA	high.level.copy.number.region	not.assessed	NA	hj	HIGH	blue	LATE
3097	X	42306625	42306959	X	42316774	42317116	+	-	2	2	4	1	(ahj)	X	+	42306728	42306729	T	null	X	+	42316995	42316996	100	10267	1	1	1	ahj	bkpt.assoc.cn.change	copy.number.visual.inspection	ahj	HIGH	grey	EARLY
3107	X	48070440	48070670	X	50199021	50199348	+	-	2	8	9	3	(ahj)	X	+	48070552	0	null	null	X	+	50199203	0	100	2128651	1	1	1	ahj	bkpt.assoc.cn.change	copy.number.visual.inspection	ahj	HIGH	grey	EARLY
3108	X	49133426	49133733	X	53805797	53806066	+	+	1	11	11	1	(ahj)	X	+	49133523	49133527	GAGG	null	X	-	53805885	53805881	95	4672362	1	1	1	ahj	bkpt.assoc.cn.change	copy.number.visual.inspection	ahj	HIGH	grey	EARLY
3109	X	49152229	49152546	X	53754933	53755234	+	-	2	14	9	2	(ahj)	X	+	49152323	49152324	C	null	X	+	53755120	53755121	82	4602797	1	1	1	ahj	bkpt.assoc.cn.change	copy.number.visual.inspection	ahj	HIGH	grey	EARLY