id	chrl	l5	l3	chrh	h5	h3	stl	sth	paired.Flag	PD9852c	PD9852h	brass1.presence.summary	brass2_chr_from	brass2_strand_from	brass2_loc_from_min	brass2_loc_from_max	brass2_microhomology	brass2_nontemplated_insertion	brass2_chr_to	brass2_strand_to	brass2_loc_to_min	brass2_loc_to_max	brass2_score	distance.between.breakpoints	CN_c	CN_h	CN.presence.regions	val.verdict	val.platform	val.approach	concensus.regions	confidence	color	TIMING
4	1	2232426	2232757	1	2717807	2718100	-	+	4	15	5	(ch)	1	-	2232648	0	null	CACAGCA	1	-	2717916	0	99	485268	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
5	1	2382968	2383319	1	2523208	2523433	-	+	4	18	1	(ch)	1	-	2383126	0	null	T	1	-	2523302	0	99	140176	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
19	1	6470093	6470375	1	6472423	6472693	+	-	2	10	1	(ch)	1	+	6470178	6470201	GCCATTCTCCTGCCTCAGCCTCC	null	1	+	6472583	6472606	96	2405	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
24	1	9341268	9341630	1	9579589	9579968	-	+	4	11	0	(c-)	1	-	9341498	9341495	CCT	null	1	-	9579738	9579735	98	238240	1	0	c	bkpt.assoc.cn.change	copy.number.visual.inspection	bkpt.assoc.cn.change	c	HIGH	yellow	LATE
33	1	15358133	15358416	1	15713138	15713428	-	+	4	23	8	(ch)	1	-	15358316	15358314	GG	null	1	-	15713245	15713243	83	354929	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
49	1	21403474	21403705	1	21887039	21887269	-	+	4	17	13	(ch)	1	-	21403606	0	null	C	1	-	21887130	0	98	483524	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
51	1	21474698	21474969	1	21737408	21737696	-	+	4	5	6	(ch)	1	-	21474845	21474843	GC	null	1	-	21737517	21737515	99	262672	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
59	1	25672702	25673034	1	26154231	26154545	-	+	4	14	2	(ch)	1	-	25672918	25672913	GAGGC	null	1	-	26154339	26154334	84	481421	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
62	1	26104215	26104514	1	26140261	26140571	+	-	2	5	3	(ch)	1	+	26104349	26104353	GCTG	null	1	+	26140469	26140473	97	36120	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
63	1	26105230	26105480	1	26137826	26138122	-	+	4	7	8	(ch)	1	-	26105385	0	null	TTAAA	1	-	26137922	0	100	32537	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
67	1	27204232	27204444	1	27265692	27266052	-	+	4	0	4	(-h)	1	-	27204322	27204318	AACT	null	1	-	27265913	27265909	99	61591	0	1	h	bkpt.assoc.cn.change	copy.number.visual.inspection	bkpt.assoc.cn.change	h	HIGH	blue	LATE
70	1	27746180	27746471	1	27941663	27942033	-	+	4	6	0	(c-)	1	-	27746330	27746326	AGCT	null	1	-	27941760	27941756	100	195430	1	1	ch	bkpt.assoc.cn.change	copy.number.visual.inspection	bkpt.assoc.cn.change	ch	HIGH	grey	EARLY
112	1	44893631	44893909	1	45475443	45475719	-	+	4	20	6	(ch)	1	-	44893815	44893814	C	null	1	-	45475545	45475544	100	581730	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
122	1	48030654	48030912	1	48096961	48097231	-	+	4	35	7	(ch)	1	-	48030812	48030809	AGA	null	1	-	48097069	48097066	93	66257	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
185	1	61791456	61791751	1	62701249	62701558	-	+	4	8	4	(ch)	1	-	61791656	0	null	null	1	-	62701340	0	89	909684	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
186	1	61823256	61823565	1	62141039	62141376	-	+	4	11	1	(ch)	1	-	61823470	0	null	TTGAGCCACTGCACTCCAGCCTGGGCAACAGAGCAAG	1	-	62141137	0	89	317667	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
190	1	62397595	62397871	1	117608226	117608517	-	+	4	21	4	(ch)	1	-	62397772	0	null	CAA	1	-	117608317	0	98	55210545	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
191	1	62556784	62556997	1	116938966	116939187	+	-	2	30	9	(ch)	1	+	62556868	62556874	TGCATT	null	1	+	116939094	116939100	99	54382226	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
192	1	62700272	62700655	1	62729298	62729630	-	+	4	9	4	(ch)	1	-	62700539	62700535	TGCA	null	1	-	62729451	62729447	99	28912	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
199	1	64426494	64426756	1	64664951	64665228	-	+	4	19	3	(ch)	1	-	64426667	64426662	TCCTC	null	1	-	64665051	64665046	95	238384	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
338	1	101872380	101872677	1	102307720	102307976	-	+	4	15	7	(ch)	1	-	101872575	101872573	TT	null	1	-	102307841	102307839	99	435266	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
390	1	116129724	116129989	1	116268728	116269015	-	+	4	17	5	(ch)	1	-	116129884	116129882	GG	null	1	-	116268816	116268814	99	138932	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
393	1	116648971	116649243	1	116805226	116805545	-	+	4	9	2	(ch)	1	-	116649139	116649132	TTCCTTC	null	1	-	116805324	116805317	93	156185	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
430	1	146714963	146715229	1	147171602	147171864	-	+	4	34	3	(ch)	1	-	146715105	146715104	T	null	1	-	147171701	147171700	100	456596	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
439	1	151366236	151366529	1	200133606	200133963	-	+	4	10	5	(ch)	1	-	151366417	151366414	TCA	null	1	-	200133780	200133777	97	48767363	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
440	1	151366767	151367029	1	151624582	151624934	+	+	1	9	5	(ch)	1	+	151366860	0	null	A	1	-	151624695	0	90	257835	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
441	1	151366699	151366965	1	199945109	199945340	-	-	8	15	6	(ch)	1	-	151366871	151366869	GG	null	1	+	199945244	199945246	95	48578373	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
465	1	156318290	156318547	1	156440460	156440720	-	+	4	23	11	(ch)	1	-	156318458	156318453	CTTTT	null	1	-	156440568	156440563	79	122110	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
476	1	159628316	159628564	9	133420842	133421109	-	-	32	22	10	(ch)	1	-	159628469	159628467	TC	null	9	+	133421014	133421016	99	NA	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
482	1	160048187	160048502	1	160240211	160240554	-	+	4	7	3	(ch)	1	-	160048378	160048372	TCACAT	null	1	-	160240304	160240298	98	191926	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
491	1	162018540	162018831	1	162407577	162407843	-	+	4	14	6	(ch)	1	-	162018740	162018734	ATAATT	null	1	-	162407700	162407694	95	388960	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
538	1	173707701	173708042	1	173896257	173896584	-	+	4	16	4	(ch)	1	-	173707914	0	null	null	1	-	173896363	0	98	188449	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
545	1	175901524	175901735	1	176023479	176023703	-	+	4	26	9	(ch)	1	-	175901646	175901642	TAAT	null	1	-	176023572	176023568	95	121926	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
549	1	176648346	176648660	1	176836069	176836363	-	+	4	13	12	(ch)	1	-	176648517	176648516	G	null	1	-	176836186	176836185	92	187669	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
661	1	197373475	197373687	1	197487929	197488167	-	-	8	47	7	(ch)	1	-	197373592	197373591	T	null	1	+	197488075	197488076	64	114483	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
663	1	197378980	197379262	1	197613374	197613661	-	+	4	22	9	(ch)	1	-	197379169	197379168	C	null	1	-	197613471	197613470	99	234302	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
669	1	197488460	197488734	1	197823821	197824087	+	+	1	49	23	(ch)	1	+	197488552	197488556	TATT	null	1	-	197823916	197823912	100	335364	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
670	1	197488271	197488657	1	197488674	197489005	-	-	8	20	5	(ch)	1	-	197488561	197488557	ATAT	null	1	+	197488826	197488830	89	265	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
678	1	198421983	198422302	1	198548923	198549188	-	+	4	34	11	(ch)	1	-	198422208	198422206	TT	null	1	-	198549028	198549026	99	126820	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
706	1	205000031	205000431	1	205002422	205002914	-	+	4	8	0	(c-)	1	-	205000229	205000225	GCCT	null	1	-	205002519	205002515	100	2290	1	1	ch	bkpt.assoc.cn.change	copy.number.visual.inspection	bkpt.assoc.cn.change	ch	HIGH	grey	EARLY
752	1	217476761	217477076	1	217574238	217574508	-	+	4	23	10	(ch)	1	-	217476988	217476985	TAA	null	1	-	217574338	217574335	94	97350	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
806	1	226271448	226271718	1	226604958	226605200	-	+	4	11	4	(ch)	1	-	226271608	226271606	CC	null	1	-	226605056	226605054	99	333448	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
846	1	237122285	237122588	1	237251764	237252067	-	+	4	7	0	(c-)	1	-	237122482	0	null	null	1	-	237251897	0	95	129415	1	0	c	bkpt.assoc.cn.change	copy.number.visual.inspection	bkpt.assoc.cn.change	c	HIGH	yellow	LATE
852	1	238534643	238534888	1	238658737	238658951	-	+	4	17	1	(ch)	1	-	238534800	238534798	GT	null	1	-	238658836	238658834	100	124036	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
915	2	9877190	9877573	2	10025022	10025341	-	+	4	4	4	(ch)	2	-	9877473	9877470	ACA	null	2	-	10025184	10025181	74	147711	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
939	2	17686414	17686656	2	17706923	17707150	-	+	4	28	9	(ch)	2	-	17686553	0	null	A	2	-	17707022	0	94	20469	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
951	2	20291371	20291643	2	20445218	20445485	-	+	4	15	3	(ch)	2	-	20291549	0	null	null	2	-	20445317	0	95	153768	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
954	2	20439706	20440021	19	50925076	50925411	-	-	32	15	5	(ch)	2	-	20439934	0	null	GCACACATGACTGG	19	+	50925270	0	100	NA	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
956	2	20818498	20818775	19	53762682	53762962	+	+	32	14	9	(ch)	2	+	20818593	20818595	AT	null	19	-	53762783	53762781	100	NA	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
980	2	24524252	24524566	2	24646854	24647114	-	+	4	16	8	(ch)	2	-	24524473	24524471	CA	null	2	-	24646951	24646949	97	122478	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
1085	2	44054977	44055262	10	80494681	80494953	-	+	32	21	2	(ch)	2	-	44055163	0	null	null	10	-	80494785	0	98	NA	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
1087	2	44125865	44126333	16	54149925	54150380	+	+	32	10	0	(c-)	2	+	44126149	0	null	null	16	-	54150016	0	88	NA	1	1	ch	bkpt.assoc.cn.change	copy.number.visual.inspection	bkpt.assoc.cn.change	ch	HIGH	grey	EARLY
1096	2	45424517	45424773	2	45551394	45551696	-	+	4	20	8	(ch)	2	-	45424675	0	null	ACCAG	2	-	45551486	0	100	126811	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
1097	2	45460001	45460279	2	45472583	45472819	+	-	2	22	8	(ch)	2	+	45460099	0	null	GTT	2	+	45472716	0	99	12617	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
1111	2	47748030	47748308	2	47964176	47964499	-	+	4	8	0	(c-)	2	-	47748205	47748202	AAG	null	2	-	47964297	47964294	100	216092	1	1	ch	bkpt.assoc.cn.change	copy.number.visual.inspection	bkpt.assoc.cn.change	ch	HIGH	grey	EARLY
1203	2	61970504	61970776	2	62165152	62165260	-	+	4	25	6	(ch)	2	-	61970654	0	null	AGA	2	-	62165246	0	99	194592	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
1207	2	62365851	62366136	2	62776195	62776470	-	+	4	8	5	(ch)	2	-	62366020	62366018	TG	null	2	-	62776285	62776283	64	410265	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
1219	2	64287578	64287813	2	64312472	64312741	-	+	4	8	1	(ch)	2	-	64287729	64287709	CAAAGTGCTGGGATTACAGG	null	2	-	64312560	64312540	98	24831	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
1226	2	65393715	65393985	2	223737454	223737732	+	+	1	13	8	(ch)	2	+	65393818	0	null	T	2	-	223737554	0	99	158343736	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
1277	2	79390725	79390946	2	79683649	79683932	-	+	4	20	6	(ch)	2	-	79390854	79390849	AAATG	null	2	-	79683744	79683739	99	292890	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
1313	2	88006403	88006809	2	112164723	112165169	+	+	1	6	2	(ch)	2	+	88006607	0	null	AC	2	-	112164847	0	95	24158240	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
1336	2	99985264	99985516	2	100668368	100668635	-	+	4	12	1	(ch)	2	-	99985428	99985422	GAAAAT	null	2	-	100668468	100668462	99	683040	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
1344	2	102495746	102496065	2	102756622	102756907	-	+	4	22	3	(ch)	2	-	102495973	0	null	TATTCAATATATGT	2	-	102756725	0	98	260752	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
1346	2	102635702	102635936	2	102835183	102835421	-	+	4	28	13	(ch)	2	-	102635832	102635830	TT	null	2	-	102835274	102835272	100	199442	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
1351	2	102849198	102849726	2	110485850	110486336	+	+	1	5	0	(c-)	2	+	102849291	102849293	AG	null	2	-	110486148	110486146	99	7636857	0	0	na	no.cn.change	copy.number.visual.inspection	bkpt.assoc.cn.change	c	MEDIUM	yellow	NA
1355	2	103117762	103118006	2	103219208	103219505	-	+	4	11	2	(ch)	2	-	103117918	103117915	AGC	null	2	-	103219309	103219306	70	101391	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
1363	2	104630209	104630467	2	105239819	105240096	-	+	4	11	0	(c-)	2	-	104630363	104630361	AT	null	2	-	105239918	105239916	94	609555	1	0	c	bkpt.assoc.cn.change	copy.number.visual.inspection	bkpt.assoc.cn.change	c	HIGH	yellow	LATE
1378	2	108856079	108856379	2	108957960	108958274	-	+	4	17	8	(ch)	2	-	108856278	108856276	AT	null	2	-	108958064	108958062	95	101786	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
1384	2	110273828	110274206	2	110486051	110486451	-	+	4	10	2	(ch)	2	-	110274104	0	null	TTGCAGATGTGATGCAGCCTACCCAGCCTCAGCTTCACTCTTGAGCATTGGGGATAAGACCACCTCCCTCAGGGGTCCATTTGTGAGAGGAGATGATGTCCCTTGGCAGCCCCTGGCACCAAGTC	2	-	110486148	0	100	212044	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
1394	2	114333169	114333488	2	114496015	114496281	-	+	4	10	3	(ch)	2	-	114333388	114333387	C	null	2	-	114496135	114496134	99	162747	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
1426	2	121784467	121784749	2	121934291	121934588	-	+	4	12	4	(ch)	2	-	121784629	121784627	GT	null	2	-	121934403	121934401	65	149774	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
1430	2	122461312	122461782	2	127820653	127820971	+	-	2	9	1	(ch)	2	+	122461563	122461564	A	null	2	+	127820852	127820853	70	5359289	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
1442	2	127453792	127454077	2	127772022	127772264	-	+	4	26	3	(ch)	2	-	127453984	127453980	CAGA	null	2	-	127772117	127772113	99	318133	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
1447	2	128243864	128244108	2	128479304	128479573	-	+	4	28	8	(ch)	2	-	128244017	128244015	GA	null	2	-	128479403	128479401	98	235386	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
1450	2	129385317	129385646	2	129469008	129469181	-	-	8	21	6	(ch)	2	-	129385552	0	null	TA	2	+	129469087	0	100	83535	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
1452	2	129468911	129469185	2	129513314	129513568	+	+	1	19	9	(ch)	2	+	129469014	0	null	ATT	2	-	129513408	0	100	44394	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
1472	2	135828863	135829216	21	31954043	31954294	-	+	32	20	6	(ch)	2	-	135829113	0	null	ATT	21	-	31954148	0	100	NA	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
1473	2	135918276	135918539	21	31695001	31695244	+	-	32	15	12	(ch)	2	+	135918376	0	null	null	21	+	31695145	0	93	NA	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
1480	2	136949676	136949960	2	141784700	141784915	-	+	4	22	6	(ch)	2	-	136949871	136949869	TT	null	2	-	141784792	141784790	100	4834921	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
1503	2	138641205	138641424	2	138694436	138694719	+	-	2	17	8	(ch)	2	+	138641297	138641301	TCCA	null	2	+	138694615	138694619	84	53318	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
1590	2	155154887	155155344	2	155155228	155155726	+	+	1	4	0	(c-)	2	+	155155076	0	null	TTATATATAAATATATACAATTTTATATATAATAT	2	-	155155397	0	65	321	0	0	na	no.cn.change	copy.number.visual.inspection	bkpt.assoc.cn.change	c	MEDIUM	yellow	NA
1607	2	159231467	159231769	2	159379122	159379427	-	+	4	20	10	(ch)	2	-	159231680	159231678	TG	null	2	-	159379257	159379255	91	147577	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
1623	2	163234687	163234997	2	163374083	163374349	-	+	4	17	1	(ch)	2	-	163234900	0	null	TCATGGGTAATGACAG	2	-	163374205	0	100	139305	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
1673	2	172115628	172115878	2	172444468	172444712	-	+	4	17	12	(ch)	2	-	172115784	172115782	CA	null	2	-	172444561	172444559	99	328777	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
1739	2	185083750	185084012	2	185353837	185354101	-	+	4	0	5	(-h)	2	-	185083896	0	null	TAAAT	2	-	185353927	0	95	270031	0	1	h	bkpt.assoc.cn.change	copy.number.visual.inspection	bkpt.assoc.cn.change	h	HIGH	blue	LATE
1761	2	187660537	187660865	2	188502169	188502382	-	+	4	11	1	(ch)	2	-	187660758	0	null	null	2	-	188502185	0	79	841427	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
1815	2	195359437	195359712	16	51492853	51493187	-	-	32	15	4	(ch)	2	-	195359611	195359608	TCC	null	16	+	51493077	51493080	74	NA	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
1817	2	195359903	195360212	16	51684223	51684557	-	-	32	17	7	(ch)	2	-	195360092	0	null	ATATA	16	+	51684455	0	99	NA	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
1822	2	195601248	195601473	16	51684345	51684565	+	+	32	27	11	(ch)	2	+	195601339	195601340	A	null	16	-	51684442	51684441	99	NA	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
1836	2	197216603	197216882	2	198199487	198199708	-	+	4	15	6	(ch)	2	-	197216782	0	null	TGAA	2	-	198199579	0	99	982797	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
1939	2	213755034	213755424	2	213824801	213825223	-	+	4	8	1	(ch)	2	-	213755262	0	null	AGATT	2	-	213824951	0	100	69689	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
1963	2	217605932	217606047	2	217770111	217770394	-	+	4	28	5	(ch)	2	-	217605945	217605942	TAA	null	2	-	217770205	217770202	100	164260	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
1986	2	223442756	223443065	2	223828373	223828681	-	+	4	13	7	(ch)	2	-	223442925	0	null	ATT	2	-	223828473	0	99	385548	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
1993	2	224539167	224539418	2	224820413	224820504	-	+	4	20	10	(ch)	2	-	224539324	224539320	AAAA	null	2	-	224820509	224820505	98	281185	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
2013	2	231086404	231086692	2	231243383	231243664	-	+	4	13	7	(ch)	2	-	231086586	231086582	GCCT	null	2	-	231243490	231243486	97	156904	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
2030	2	241741113	241741399	2	242143682	242143951	-	+	4	21	10	(ch)	2	-	241741309	241741306	TAC	null	2	-	242143777	242143774	98	402468	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
2076	3	11581671	11581956	3	11642072	11642193	+	-	2	15	3	(ch)	3	+	11581773	11581775	AT	null	3	+	11642090	11642092	93	60317	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
2083	3	12962954	12963274	3	13056739	13057021	-	+	4	12	0	(c-)	3	-	12963168	12963167	A	null	3	-	13056847	13056846	98	93679	1	0	c	bkpt.assoc.cn.change	copy.number.visual.inspection	bkpt.assoc.cn.change	c	HIGH	yellow	LATE
2150	3	30532306	30532647	3	30685074	30685381	-	+	4	17	5	(ch)	3	-	30532548	0	null	TCTCTTCT	3	-	30685201	0	94	152653	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
2156	3	31755500	31755761	3	31919760	31920039	-	+	4	29	4	(ch)	3	-	31755664	0	null	TT	3	-	31919852	0	96	164188	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
2162	3	33391178	33391445	3	33935582	33935845	-	+	4	20	8	(ch)	3	-	33391358	33391355	ATT	null	3	-	33935672	33935669	100	544314	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
2204	3	45363134	45363414	7	29804315	29804603	-	+	32	19	11	(ch)	3	-	45363308	45363307	G	null	7	-	29804415	29804414	99	NA	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
2208	3	45563863	45564143	7	29683112	29683374	+	-	32	24	7	(ch)	3	+	45563966	45563969	AAT	null	7	+	29683280	29683283	82	NA	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
2222	3	49119458	49119711	3	49543062	49543348	-	+	4	13	9	(ch)	3	-	49119620	49119617	GCA	null	3	-	49543159	49543156	99	423539	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
2229	3	50156376	50156675	3	50340082	50340454	-	+	4	11	4	(ch)	3	-	50156574	50156571	TGT	null	3	-	50340217	50340214	98	183643	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
2231	3	50276410	50276743	3	50292922	50293237	+	-	2	21	2	(ch)	3	+	50276508	0	null	null	3	+	50293141	0	97	16633	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
2233	3	52303719	52303999	3	52993326	52993583	+	-	2	10	5	(ch)	3	+	52303823	52303826	CAG	null	3	+	52993479	52993482	100	689656	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
2234	3	52598202	52598457	3	52780050	52780302	+	-	2	8	3	(ch)	3	+	52598299	0	null	null	3	+	52780183	0	97	181884	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
2251	3	57806283	57806567	15	62588693	62589072	-	+	32	11	2	(ch)	3	-	57806453	0	null	GC	15	-	62588816	0	99	NA	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
2252	3	57955328	57955702	15	56046990	56047342	-	-	32	0	5	(-h)	3	-	57955521	57955518	ACC	null	15	+	56047232	56047235	100	NA	1	1	ch	bkpt.assoc.cn.change	copy.number.visual.inspection	bkpt.assoc.cn.change	ch	HIGH	grey	EARLY
2253	3	58112467	58112738	15	62606096	62606386	+	-	32	10	7	(ch)	3	+	58112566	58112568	GA	null	15	+	62606270	62606272	69	NA	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
2263	3	60674302	60674594	3	60996602	60996927	-	+	4	13	3	(ch)	3	-	60674490	0	null	GGGG	3	-	60996704	0	98	322214	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
2274	3	63679001	63679252	3	64255544	64255778	-	+	4	22	9	(ch)	3	-	63679162	63679160	TG	null	3	-	64255650	64255648	100	576488	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
2288	3	66520861	66521192	3	66529573	66529892	-	+	4	7	1	(ch)	3	-	66521095	0	null	CAGAGTATCTGTCTTATGTTCTTA	3	-	66529667	0	99	8572	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
2294	3	67299122	67299478	3	67345165	67345523	-	+	4	10	0	(c-)	3	-	67299383	0	null	ATTCCA	3	-	67345313	0	99	45930	1	0	c	bkpt.assoc.cn.change	copy.number.visual.inspection	bkpt.assoc.cn.change	c	HIGH	yellow	LATE
2330	3	77336769	77337060	3	77434758	77435004	-	+	4	10	5	(ch)	3	-	77336950	77336947	CTT	null	3	-	77434852	77434849	95	97902	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
2426	3	100937303	100937646	3	100937924	100938298	-	+	4	9	3	(ch)	3	-	100937515	100937510	GATGT	null	3	-	100938054	100938049	90	539	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
2517	3	119953912	119954201	3	120552532	120552772	-	+	4	20	6	(ch)	3	-	119954107	119954104	GAA	null	3	-	120552630	120552627	100	598523	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
2537	3	123776198	123776519	3	123820873	123821164	+	-	2	4	0	(c-)	3	+	123776290	123776291	A	null	3	+	123821064	123821065	90	44774	1	0	c	bkpt.assoc.cn.change	copy.number.visual.inspection	bkpt.assoc.cn.change	c	HIGH	yellow	LATE
2548	3	128932567	128932812	3	129488725	129489011	-	+	4	13	7	(ch)	3	-	128932722	128932714	TGGTGGCT	null	3	-	129488837	129488829	97	556115	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
2570	3	135148598	135148841	3	135352392	135352543	-	+	4	25	8	(ch)	3	-	135148740	0	null	AC	3	-	135352487	0	99	203747	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
2575	3	136203618	136203984	3	136267301	136267669	-	+	4	6	0	(c-)	3	-	136203830	0	null	ATTCT	3	-	136267458	0	99	63628	1	0	c	bkpt.assoc.cn.change	copy.number.visual.inspection	bkpt.assoc.cn.change	c	HIGH	yellow	LATE
2577	3	136451232	136451454	3	136728980	136729199	-	+	4	11	9	(ch)	3	-	136451364	136451362	CG	null	3	-	136729072	136729070	99	277708	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
2599	3	142283420	142283673	3	173860549	173860829	-	+	4	15	10	(ch)	3	-	142283552	0	null	TTTATAAATTAC	3	-	173860633	0	94	31577081	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
2620	3	146269419	146269749	3	146282721	146283054	-	+	4	16	3	(ch)	3	-	146269623	0	null	null	3	-	146282820	0	99	13197	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
2623	3	147012151	147012392	3	147855671	147855891	-	+	4	18	8	(ch)	3	-	147012303	147012301	AG	null	3	-	147855769	147855767	100	843466	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
2678	3	160181531	160181934	3	160407573	160408006	-	+	4	7	2	(ch)	3	-	160181830	0	null	AAAGCAAATATCTTCATACATGTTCCCTCATGGATCTATATGAAAATTCTTTAGATTCATGCTCAAGATTGGAATTACCGAATTATGGAGCATACTTAATCAAATCAAGAAGTGGCAGGGTGCTT	3	-	160407698	0	99	225868	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
2679	3	160217050	160217310	3	160335667	160335942	+	-	2	18	12	(ch)	3	+	160217139	0	null	G	3	+	160335841	0	98	118702	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
2709	3	166587465	166587894	19	50361051	50361484	-	+	32	6	0	(c-)	3	-	166587681	166587678	CTG	null	19	-	50361165	50361162	95	NA	1	0	c	bkpt.assoc.cn.change	copy.number.visual.inspection	bkpt.assoc.cn.change	c	HIGH	yellow	LATE
2739	3	172927346	172927579	3	173051239	173051519	-	+	4	16	7	(ch)	3	-	172927464	0	null	TC	3	-	173051338	0	100	123874	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
2823	3	192426005	192426328	3	192604783	192605046	-	+	4	19	3	(ch)	3	-	192426227	192426224	AAT	null	3	-	192604875	192604872	99	178648	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
2827	3	193513480	193513768	3	193747895	193748206	-	+	4	17	7	(ch)	3	-	193513662	0	null	null	3	-	193747988	0	99	234326	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
2840	4	613912	614368	4	736657	737107	-	+	4	6	0	(c-)	4	-	614188	614185	AGC	null	4	-	736827	736824	99	122639	1	0	c	bkpt.assoc.cn.change	copy.number.visual.inspection	bkpt.assoc.cn.change	c	HIGH	yellow	LATE
2843	4	1861228	1861500	4	2075622	2075949	-	+	4	8	0	(c-)	4	-	1861409	1861406	CCA	null	4	-	2075736	2075733	99	214327	1	0	c	bkpt.assoc.cn.change	copy.number.visual.inspection	bkpt.assoc.cn.change	c	HIGH	yellow	LATE
2854	4	7506898	7507171	4	7586626	7586935	-	+	4	9	6	(ch)	4	-	7507067	7507065	AA	null	4	-	7586727	7586725	97	79660	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
2974	4	42060546	42060952	12	83790602	83790947	+	+	32	4	0	(c-)	4	+	42060739	42060743	AAAC	null	12	-	83790708	83790704	93	NA	0	0	na	no.cn.change	copy.number.visual.inspection	bkpt.assoc.cn.change	c	MEDIUM	yellow	NA
3130	4	82630774	82631008	4	82754702	82754950	-	+	4	17	2	(ch)	4	-	82630901	82630899	CT	null	4	-	82754796	82754794	98	123895	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
3155	4	90939366	90939657	4	91066392	91066726	-	+	4	9	2	(ch)	4	-	90939548	90939546	CT	null	4	-	91066506	91066504	95	126958	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
3173	4	95494190	95494432	4	95722324	95722581	-	+	4	11	3	(ch)	4	-	95494340	95494338	TT	null	4	-	95722421	95722419	96	228081	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
3192	4	101896986	101897256	4	102196346	102196622	-	+	4	15	2	(ch)	4	-	101897164	101897162	GT	null	4	-	102196448	102196446	90	299284	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
3196	4	102999180	102999442	4	103374885	103375125	-	+	4	25	8	(ch)	4	-	102999341	102999340	A	null	4	-	103374985	103374984	100	375644	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
3215	4	105966189	105966489	4	106106950	106107288	-	+	4	11	5	(ch)	4	-	105966355	0	null	null	4	-	106107040	0	70	140685	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
3220	4	107154911	107155163	4	107754601	107754657	-	+	4	8	5	(ch)	4	-	107155066	107155064	AC	null	4	-	107754705	107754703	100	599639	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
3224	4	110719564	110719789	4	110878642	110878879	-	+	4	21	3	(ch)	4	-	110719698	110719697	C	null	4	-	110878740	110878739	100	159042	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
3245	4	118262872	118263195	4	122053653	122053933	-	+	4	7	4	(ch)	4	-	118263080	118263079	A	null	4	-	122053753	122053752	100	3790673	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
3342	4	143219908	143220278	4	143422803	143423153	-	+	4	9	2	(ch)	4	-	143220154	0	null	A	4	-	143422947	0	98	202793	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
3356	4	147045527	147045773	4	150066742	150067026	-	-	8	18	6	(ch)	4	-	147045684	147045679	GAAGT	null	4	+	150066914	150066919	100	3021230	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
3358	4	147248403	147248687	4	147257427	147257682	+	+	1	17	3	(ch)	4	+	147248514	0	null	TACATA	4	-	147257528	0	98	9014	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
3359	4	147254796	147255086	4	150113412	150113688	-	+	4	26	7	(ch)	4	-	147254988	0	null	A	4	-	150113516	0	95	2858528	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
3410	4	163051827	163051977	4	163195181	163195505	-	+	4	5	8	(ch)	4	-	163051887	163051883	TTTT	null	4	-	163195286	163195282	100	143399	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
3438	4	168486752	168487093	4	170037395	170037763	-	-	8	4	0	(c-)	4	-	168486988	168486986	CT	null	4	+	170037616	170037618	95	1550628	0	0	na	no.cn.change	copy.number.visual.inspection	bkpt.assoc.cn.change	c	MEDIUM	yellow	NA
3446	4	170617159	170617425	4	170910342	170910624	-	+	4	22	6	(ch)	4	-	170617333	170617330	GGA	null	4	-	170910443	170910440	95	293110	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
3501	4	186050029	186050298	4	186713873	186714165	-	+	4	20	9	(ch)	4	-	186050182	0	null	A	4	-	186713968	0	92	663786	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
3508	4	187157048	187157351	4	187303810	187304175	-	+	4	13	3	(ch)	4	-	187157191	187157189	GT	null	4	-	187303916	187303914	100	146725	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
3595	5	35152862	35153104	5	35768158	35768420	-	+	4	23	6	(ch)	5	-	35153011	35153007	ATGT	null	5	-	35768255	35768251	100	615244	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
3641	5	52646623	52646894	5	52909963	52910247	-	+	4	11	9	(ch)	5	-	52646793	0	null	null	5	-	52910067	0	99	263274	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
3655	5	57050038	57050343	5	57181161	57181505	-	+	4	9	3	(ch)	5	-	57050237	57050235	AC	null	5	-	57181286	57181284	98	131049	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
3715	5	75666600	75666876	5	75816757	75817096	-	+	4	5	2	(ch)	5	-	75666750	75666748	AG	null	5	-	75816850	75816848	97	150100	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
3726	5	78361243	78361504	5	78675918	78676144	-	+	4	23	4	(ch)	5	-	78361412	78361409	CAG	null	5	-	78676016	78676013	100	314604	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
3840	5	97525682	97526163	5	156006213	156006649	+	-	2	8	1	(ch)	5	+	97525920	97525925	TATTG	null	5	+	156006508	156006513	99	58480588	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
3912	5	118373688	118373928	5	118464792	118465044	-	+	4	17	6	(ch)	5	-	118373834	118373831	GAG	null	5	-	118464899	118464896	99	91065	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
3941	5	128977163	128977424	5	129261584	129261847	-	+	4	26	8	(ch)	5	-	128977321	128977316	TTTAA	null	5	-	129261678	129261673	90	284357	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
3972	5	141598087	141598377	5	141601582	141601843	+	-	2	16	9	(ch)	5	+	141598197	141598199	AC	null	5	+	141601742	141601744	98	3545	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
3993	5	153219954	153220240	5	153700531	153700815	-	+	4	21	9	(ch)	5	-	153220142	153220138	TGTA	null	5	-	153700634	153700630	100	480492	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
3999	5	154051118	154051439	5	154107309	154107617	-	+	4	18	5	(ch)	5	-	154051304	0	null	T	5	-	154107399	0	100	56095	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
4071	5	170762157	170762473	5	170993436	170993754	-	+	4	12	8	(ch)	5	-	170762356	170762353	CAA	null	5	-	170993546	170993543	100	231190	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
4075	5	172857835	172858087	5	172877125	172877349	-	-	8	23	9	(ch)	5	-	172858001	172857998	TTT	null	5	+	172877249	172877252	100	19248	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
4076	5	172876733	172877017	5	174502239	174502525	+	+	1	21	10	(ch)	5	+	172876824	172876828	GCAA	null	5	-	174502350	174502346	95	1625526	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
4108	6	2866982	2867312	6	2990828	2991168	-	+	4	4	0	(c-)	6	-	2867214	2867208	AGGAAG	null	6	-	2991000	2990994	99	123786	1	0	c	bkpt.assoc.cn.change	copy.number.visual.inspection	bkpt.assoc.cn.change	c	HIGH	yellow	LATE
4139	6	10280885	10281088	6	10331186	10331419	-	+	4	37	13	(ch)	6	-	10280996	10280992	CAGC	null	6	-	10331276	10331272	98	50280	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
4140	6	10327785	10328048	6	10576659	10576910	-	+	4	70	32	(ch)	6	-	10327951	10327948	AAC	null	6	-	10576752	10576749	94	248801	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
4162	6	14840516	14840804	6	15483291	15483554	-	+	4	9	6	(ch)	6	-	14840682	0	null	TCC	6	-	15483385	0	99	642703	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
4171	6	16310703	16310883	6	16436154	16436368	-	+	4	31	12	(ch)	6	-	16310830	16310820	AGGCAGGAGA	null	6	-	16436244	16436234	93	125414	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
4203	6	24615718	24615973	6	24833216	24833488	-	+	4	11	3	(ch)	6	-	24615879	0	null	null	6	-	24833315	0	95	217436	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
4237	6	33260325	33260629	6	33357231	33357553	-	+	4	12	4	(ch)	6	-	33260527	33260525	AG	null	6	-	33357395	33357393	98	96868	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
4240	6	33529514	33529827	6	35540310	35540628	-	+	4	14	3	(ch)	6	-	33529731	33529730	T	null	6	-	35540425	35540424	96	2010694	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
4241	6	34063929	34064181	6	39301248	39301497	-	-	8	21	5	(ch)	6	-	34064089	34064087	GG	null	6	+	39301402	39301404	99	5237313	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
4243	6	34271785	34272051	6	41471165	41471423	+	+	1	16	10	(ch)	6	+	34271877	34271880	AAA	null	6	-	41471257	41471254	69	7199380	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
4248	6	35149963	35150471	6	37478658	37478985	-	-	8	12	3	(ch)	6	-	35150378	35150375	CCC	null	6	+	37478789	37478792	98	2328411	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
4250	6	35299877	35300163	6	35525356	35525671	-	+	4	22	6	(ch)	6	-	35300065	35300063	CC	null	6	-	35525448	35525446	92	225383	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
4252	6	35355524	35355848	6	35548998	35549293	+	-	2	27	12	(ch)	6	+	35355616	35355617	G	null	6	+	35549158	35549159	97	193542	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
4253	6	35374403	35374627	6	35555418	35555654	-	+	4	37	13	(ch)	6	-	35374534	35374532	TT	null	6	-	35555506	35555504	99	180972	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
4254	6	35528495	35528830	15	22901999	22902362	-	-	32	9	2	(ch)	6	-	35528681	35528675	TACAGG	null	15	+	22902247	22902253	93	NA	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
4257	6	35656043	35656376	6	35740926	35741226	-	+	4	11	0	(c-)	6	-	35656266	35656265	G	null	6	-	35741040	35741039	63	84774	1	1	ch	bkpt.assoc.cn.change	copy.number.visual.inspection	bkpt.assoc.cn.change	ch	HIGH	grey	EARLY
4260	6	35846492	35846806	6	35919615	35919983	-	-	8	10	0	(c-)	6	-	35846664	35846662	AC	null	6	+	35919882	35919884	95	73218	0	0	na	no.cn.change	copy.number.visual.inspection	bkpt.assoc.cn.change	c	MEDIUM	yellow	NA
4290	6	41531508	41531831	6	41834924	41835201	-	+	4	14	1	(ch)	6	-	41531719	0	null	GGTAGGA	6	-	41835031	0	98	303312	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
4295	6	42580967	42581274	6	42690895	42691194	-	+	4	12	3	(ch)	6	-	42581140	42581138	GT	null	6	-	42690996	42690994	98	109856	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
4310	6	46297826	46298223	6	46302552	46303027	+	+	1	5	0	(c-)	6	+	46297934	46297937	AGT	null	6	-	46302779	46302776	99	4845	0	0	na	no.cn.change	copy.number.visual.inspection	bkpt.assoc.cn.change	c	MEDIUM	yellow	NA
4315	6	47310419	47310668	6	47465343	47465619	-	+	4	20	1	(ch)	6	-	47310565	0	null	AGC	6	-	47465445	0	100	154880	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
4430	6	86200352	86200641	6	86480654	86480963	+	-	2	20	2	(ch)	6	+	86200474	86200480	TGGTTT	null	6	+	86480863	86480869	99	280389	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
4436	6	88038630	88038866	6	88169036	88169310	-	+	4	14	11	(ch)	6	-	88038759	0	null	T	6	-	88169159	0	100	130400	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
4474	6	103208543	103208851	6	103803644	103803942	-	+	4	10	7	(ch)	6	-	103208746	103208743	CAA	null	6	-	103803773	103803770	100	595027	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
4523	6	125256577	125256851	6	125612167	125612456	-	+	4	17	7	(ch)	6	-	125256739	0	null	null	6	-	125612273	0	70	355534	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
4587	6	151033970	151034290	6	151122736	151122999	-	+	4	8	1	(ch)	6	-	151034200	151034197	GGC	null	6	-	151122831	151122828	99	88631	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
4604	6	159239849	159240229	6	159556169	159556492	-	+	4	13	1	(ch)	6	-	159240118	159240116	GC	null	6	-	159556310	159556308	99	316192	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
4623	7	2926927	2927282	7	2930226	2930615	-	-	8	11	0	(c-)	7	-	2927073	2927070	GAA	null	7	+	2930502	2930505	99	3429	1	0	c	bkpt.assoc.cn.change	copy.number.visual.inspection	bkpt.assoc.cn.change	c	HIGH	yellow	LATE
4631	7	5597489	5597732	7	5674641	5674881	-	+	4	34	4	(ch)	7	-	5597635	0	null	GTCAC	7	-	5674746	0	100	77111	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
4673	7	14422115	14422380	7	14430276	14430549	+	-	2	39	13	(ch)	7	+	14422217	14422222	AAAAT	null	7	+	14430447	14430452	69	8230	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
4675	7	14457664	14457916	7	14464609	14464867	+	-	2	34	6	(ch)	7	+	14457753	0	null	TTAAATTT	7	+	14464775	0	95	7022	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
4688	7	16295672	16295920	7	16856725	16857003	-	+	4	26	8	(ch)	7	-	16295820	16295816	AGCA	null	7	-	16856825	16856821	100	561005	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
4705	7	18543230	18543452	7	36592287	36592519	-	-	8	28	4	(ch)	7	-	18543357	18543354	TGG	null	7	+	36592426	36592429	99	18049069	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
4717	7	20519831	20520109	7	53389225	53389466	+	+	1	38	7	(ch)	7	+	20519924	0	null	null	7	-	53389326	0	98	32869402	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
4721	7	20643728	20643980	7	35330558	35330790	-	+	4	34	8	(ch)	7	-	20643884	20643882	TT	null	7	-	35330652	35330650	98	14686768	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
4731	7	23312014	23312286	7	53403216	53403487	+	+	1	27	6	(ch)	7	+	23312111	23312112	G	null	7	-	53403323	53403322	78	30091212	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
4836	7	35122729	35123094	7	36624303	36624447	+	+	1	12	16	(ch)	7	+	35122821	35122822	C	null	7	-	36624485	36624484	95	1501664	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
4837	7	35296851	35297163	7	55820488	55820757	-	+	4	21	5	(ch)	7	-	35297072	35297069	CCC	null	7	-	55820580	55820577	99	20523508	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
4844	7	36210783	36211052	7	36391248	36391554	-	+	4	11	5	(ch)	7	-	36210957	36210953	CATG	null	7	-	36391340	36391336	96	180383	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
4847	7	36751189	36751439	7	53387811	53388077	-	-	8	29	4	(ch)	7	-	36751341	36751339	AT	null	7	+	53387976	53387978	95	16636635	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
4927	7	44485358	44485627	7	44762639	44762878	-	+	4	12	5	(ch)	7	-	44485536	44485534	TG	null	7	-	44762737	44762735	100	277201	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
4930	7	44908451	44908724	7	45052714	45052959	-	+	4	10	1	(ch)	7	-	44908608	0	null	GGG	7	-	45052810	0	92	144202	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
4931	7	44994180	44994407	7	44997278	44997518	+	-	2	10	6	(ch)	7	+	44994271	44994276	ACCCA	null	7	+	44997425	44997430	96	3154	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
4967	7	48751525	48751743	7	48844987	48845222	+	-	2	36	7	(ch)	7	+	48751616	0	null	TT	7	+	48845134	0	94	93518	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
4981	7	50501835	50502159	7	50769473	50769790	-	+	4	23	12	(ch)	7	-	50502032	0	null	GAGGG	7	-	50769564	0	100	267532	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
4983	7	50571075	50571313	7	50638823	50639069	-	+	4	29	4	(ch)	7	-	50571223	50571216	ACAATGA	null	7	-	50638935	50638928	97	67712	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
5017	7	53379294	53379527	7	53389144	53389420	+	-	2	37	8	(ch)	7	+	53379384	0	null	null	7	+	53389327	0	99	9943	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
5022	7	55140548	55140834	7	55257465	55257723	-	+	4	12	3	(ch)	7	-	55140733	55140730	CCT	null	7	-	55257563	55257560	100	116830	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
5030	7	57428363	57428790	7	57431185	57431656	+	-	2	9	1	(ch)	7	+	57428586	0	null	TGTCAGCTTTCT	7	+	57431564	0	90	2978	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
5066	7	69001497	69001750	7	69344676	69344944	-	+	4	43	15	(ch)	7	-	69001658	0	null	ATTGAATC	7	-	69344769	0	98	343111	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
5086	7	73601685	73601956	7	73906402	73906671	-	+	4	25	6	(ch)	7	-	73601863	73601861	TA	null	7	-	73906499	73906497	90	304636	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
5089	7	73732921	73733213	X	117327405	117327672	+	-	32	20	3	(ch)	7	+	73732974	73732990	GGAGGTTGCAGTGAGC	null	X	+	117327504	117327520	79	NA	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
5093	7	75812449	75812767	7	76118215	76118512	-	+	4	16	5	(ch)	7	-	75812678	75812675	CTG	null	7	-	76118306	76118303	99	305628	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
5096	7	76885631	76885902	7	82017186	82017419	-	+	4	27	10	(ch)	7	-	76885808	76885807	C	null	7	-	82017278	82017277	78	5131470	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
5196	7	91837012	91837248	7	91958453	91958693	-	+	4	17	7	(ch)	7	-	91837156	91837154	CT	null	7	-	91958543	91958541	100	121387	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
5202	7	92544699	92544950	7	92754687	92754949	-	+	4	24	4	(ch)	7	-	92544853	92544851	TG	null	7	-	92754794	92754792	100	209941	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
5203	7	92745313	92745569	7	92911638	92911909	-	+	4	22	3	(ch)	7	-	92745478	92745475	GAA	null	7	-	92911730	92911727	99	166252	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
5204	7	92752287	92752527	10	3883934	3884160	+	+	32	22	12	(ch)	7	+	92752371	92752378	AGGAAAA	null	10	-	3884027	3884020	93	NA	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
5205	7	92752230	92752475	10	3708921	3709215	-	-	32	17	5	(ch)	7	-	92752381	92752373	TTTTTTCC	null	10	+	3709121	3709129	99	NA	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
5262	7	105254529	105254799	7	105362924	105363231	-	+	4	23	5	(ch)	7	-	105254705	0	null	ACTATACCTGGCTAA	7	-	105363028	0	90	108323	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
5453	7	151048229	151048504	7	151148113	151148389	-	+	4	23	12	(ch)	7	-	151048413	151048411	CT	null	7	-	151148206	151148204	99	99793	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
5454	7	151409729	151409982	7	151483182	151483491	-	+	4	18	5	(ch)	7	-	151409873	151409869	ATGG	null	7	-	151483280	151483276	99	73407	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
5470	8	8999542	8999791	8	9058119	9058385	-	+	4	14	4	(ch)	8	-	8999686	8999683	GCA	null	8	-	9058218	9058215	89	58532	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
5490	8	28578926	28579284	8	28655917	28656292	-	+	4	4	8	(ch)	8	-	28579170	0	null	TGA	8	-	28656089	0	100	76919	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
5491	8	29094417	29094684	8	29233872	29234181	-	+	4	17	2	(ch)	8	-	29094592	0	null	ACATTTATAATACATTTTAGTTT	8	-	29233979	0	95	139387	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
5504	8	38092790	38093064	8	38690905	38691199	+	+	1	19	6	(ch)	8	+	38092885	0	null	ACCATTCAAATGTGGAGCATTTGAATCACTACTC	8	-	38690993	0	93	598108	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
5517	8	48101755	48102040	8	48104385	48104650	-	+	4	21	0	(c-)	8	-	48101938	0	null	null	8	-	48104475	0	85	2537	1	0	c	bkpt.assoc.cn.change	copy.number.visual.inspection	bkpt.assoc.cn.change	c	HIGH	yellow	LATE
5531	8	54222980	54223266	16	3505414	3505670	-	-	32	21	10	(ch)	8	-	54223169	0	null	ATGTTT	16	+	3505568	0	99	NA	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
5533	8	54747433	54747772	8	54813860	54814203	-	+	4	4	2	(ch)	8	-	54747652	54747649	ACT	null	8	-	54813983	54813980	94	66331	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
5558	8	60133967	60134197	8	60445771	60446049	-	+	4	24	11	(ch)	8	-	60134104	60134099	CCTTT	null	8	-	60445867	60445862	97	311763	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
5571	8	61893042	61893359	8	61979170	61979437	-	+	4	7	5	(ch)	8	-	61893262	61893261	G	null	8	-	61979276	61979275	100	86014	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
5658	8	80566722	80567029	8	80695668	80696019	-	+	4	11	4	(ch)	8	-	80566927	0	null	AAAA	8	-	80695771	0	100	128844	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
5743	8	101844074	101844346	8	102452723	102452988	-	+	4	29	15	(ch)	8	-	101844233	101844232	T	null	8	-	102452821	102452820	98	608588	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
5746	8	102431313	102431611	8	103094253	103094548	-	+	4	7	8	(ch)	8	-	102431491	102431490	C	null	8	-	103094362	103094361	97	662871	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
5770	8	107025332	107025574	8	107616179	107616439	-	+	4	16	6	(ch)	8	-	107025488	107025484	AGTC	null	8	-	107616273	107616269	99	590785	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
5793	8	112877326	112877777	8	113595966	113596355	-	+	4	5	2	(ch)	8	-	112877686	112877684	TA	null	8	-	113596218	113596216	100	718532	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
5832	8	122118318	122118607	8	122236820	122237117	-	+	4	15	4	(ch)	8	-	122118510	122118507	AAC	null	8	-	122236922	122236919	94	118412	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
5873	8	133886693	133886983	8	134146148	134146419	-	+	4	17	11	(ch)	8	-	133886887	133886885	GA	null	8	-	134146243	134146241	94	259356	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
5906	8	140783962	140784432	8	142991338	142991807	+	+	1	6	0	(c-)	8	+	140784166	140784169	GTC	null	8	-	142991522	142991519	100	2207356	0	0	na	no.cn.change	copy.number.visual.inspection	bkpt.assoc.cn.change	c	MEDIUM	yellow	NA
5915	8	144849063	144849361	9	139224921	139225185	-	+	32	16	0	(c-)	8	-	144849264	144849259	GAGAG	null	9	-	139225014	139225009	93	NA	1	0	c	bkpt.assoc.cn.change	copy.number.visual.inspection	bkpt.assoc.cn.change	c	HIGH	yellow	LATE
5921	8	145583830	145584067	8	145679793	145680065	-	-	8	13	0	(c-)	8	-	145583970	145583969	A	null	8	+	145679959	145679960	100	95989	1	0	c	bkpt.assoc.cn.change	copy.number.visual.inspection	bkpt.assoc.cn.change	c	HIGH	yellow	LATE
5920	8	145587912	145588358	8	145588712	145589133	+	-	2	14	4	(ch)	8	+	145588020	145588022	CA	null	8	+	145588887	145588889	90	867	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
5923	8	145699737	145700102	16	54149471	54149925	+	-	32	13	3	(ch)	8	+	145699959	0	null	A	16	+	54149830	0	99	NA	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
5929	9	4555622	4555939	9	4693621	4693932	-	+	4	12	3	(ch)	9	-	4555842	0	null	TATT	9	-	4693728	0	98	137886	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
5996	9	31863071	31863338	9	34777138	34777380	-	+	4	15	4	(ch)	9	-	31863245	31863244	A	null	9	-	34777233	34777232	100	2913988	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
6000	9	34093327	34093610	9	34779811	34780088	-	+	4	18	10	(ch)	9	-	34093511	34093506	GAAAC	null	9	-	34779919	34779914	92	686408	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
6004	9	35012544	35012808	11	106365172	106365422	-	+	32	14	9	(ch)	9	-	35012711	35012708	TCC	null	11	-	106365277	106365274	97	NA	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
6005	9	35135259	35135584	9	36079316	36079609	-	-	8	9	4	(ch)	9	-	35135492	35135491	T	null	9	+	36079480	36079481	94	943988	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
6023	9	72821587	72822066	9	72906183	72906659	-	+	4	6	0	(c-)	9	-	72821751	72821748	CTT	null	9	-	72906280	72906277	99	84529	1	0	c	bkpt.assoc.cn.change	copy.number.visual.inspection	bkpt.assoc.cn.change	c	HIGH	yellow	LATE
6051	9	88249681	88250110	9	88347470	88347908	-	+	4	0	5	(-h)	9	-	88249856	0	null	A	9	-	88347568	0	99	97712	0	1	h	bkpt.assoc.cn.change	copy.number.visual.inspection	bkpt.assoc.cn.change	h	HIGH	blue	LATE
6071	9	99687229	99687571	9	99778108	99778403	-	+	4	5	1	(ch)	9	-	99687479	99687477	GC	null	9	-	99778264	99778262	99	90785	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
6143	9	131384377	131384739	9	131402153	131402526	-	+	4	9	0	(c-)	9	-	131384660	131384656	TTGC	null	9	-	131402367	131402363	70	17707	1	0	c	bkpt.assoc.cn.change	copy.number.visual.inspection	bkpt.assoc.cn.change	c	HIGH	yellow	LATE
6148	9	134286198	134286462	9	134317694	134317977	-	-	8	34	18	(ch)	9	-	134286354	134286351	AAT	null	9	+	134317884	134317887	99	31530	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
6149	9	134339863	134340183	9	134501667	134502007	-	+	4	10	1	(ch)	9	-	134340058	134340053	TCCTC	null	9	-	134501785	134501780	99	161727	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
6156	9	134738042	134738116	21	38602256	38602508	+	+	32	27	14	(ch)	9	+	134738135	134738136	A	null	21	-	38602367	38602366	100	NA	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
6163	9	136440915	136441237	9	136544018	136544293	-	+	4	9	3	(ch)	9	-	136441118	0	null	TGAGCTG	9	-	136544119	0	94	103001	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
6164	9	136658658	136658967	19	59066452	59066719	+	+	32	15	6	(ch)	9	+	136658752	136658753	C	null	19	-	59066571	59066570	94	NA	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
6173	10	137218	137453	17	72462050	72462323	+	-	32	23	8	(ch)	10	+	137311	137314	TGG	null	17	+	72462230	72462233	81	NA	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
6187	10	5382109	5382353	10	5418578	5418845	-	+	4	22	11	(ch)	10	-	5382262	5382260	AT	null	10	-	5418670	5418668	99	36408	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
6190	10	5417905	5418218	10	6109693	6109968	-	+	4	16	5	(ch)	10	-	5418122	5418120	GC	null	10	-	6109783	6109781	99	691661	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
6207	10	11738348	11738680	10	11873633	11873932	-	+	4	19	8	(ch)	10	-	11738562	11738560	TT	null	10	-	11873735	11873733	98	135173	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
6256	10	35127035	35127356	10	36187422	36187689	-	+	4	8	5	(ch)	10	-	35127236	35127235	A	null	10	-	36187513	36187512	100	1060277	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
6290	10	45264949	45265209	10	45403882	45404136	-	+	4	24	9	(ch)	10	-	45265108	45265106	GG	null	10	-	45403981	45403979	100	138873	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
6315	10	53299249	53299512	10	53534809	53535069	-	+	4	26	10	(ch)	10	-	53299415	0	null	null	10	-	53534906	0	100	235491	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
6382	10	65160396	65160695	10	65259789	65260097	-	+	4	13	0	(c-)	10	-	65160561	0	null	null	10	-	65259883	0	91	99322	1	0	c	bkpt.assoc.cn.change	copy.number.visual.inspection	bkpt.assoc.cn.change	c	HIGH	yellow	LATE
6412	10	70271591	70271894	10	70393263	70393565	-	+	4	12	2	(ch)	10	-	70271820	70271808	CAATATGGTGAA	null	10	-	70393391	70393379	97	121571	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
6424	10	75032453	75032745	10	81205106	81205475	-	+	4	17	1	(ch)	10	-	75032603	75032602	G	null	10	-	81205213	81205212	96	6172610	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
6433	10	76451035	76451315	10	76668991	76669266	-	+	4	18	3	(ch)	10	-	76451223	0	null	TGGTAACTTTATCCAT	10	-	76669099	0	100	217876	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
6437	10	76798599	76798862	10	77133763	77134004	-	+	4	41	13	(ch)	10	-	76798771	76798768	CTG	null	10	-	77133863	77133860	100	335092	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
6452	10	78455056	78455313	10	78691887	78692141	-	+	4	24	9	(ch)	10	-	78455209	78455204	AATAT	null	10	-	78691985	78691980	100	236776	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
6460	10	79395760	79396044	10	80080004	80080274	-	+	4	14	11	(ch)	10	-	79395940	79395938	CT	null	10	-	80080092	80080090	99	684152	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
6464	10	80168669	80168954	10	80171991	80172281	+	-	2	26	5	(ch)	10	+	80168784	80168786	TG	null	10	+	80172186	80172188	99	3402	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
6490	10	88683968	88684285	10	89388246	89388559	-	+	4	11	8	(ch)	10	-	88684191	88684188	TAA	null	10	-	89388402	89388399	97	704211	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
6511	10	103456092	103456381	10	103474070	103474336	-	+	4	19	0	(c-)	10	-	103456283	103456281	AC	null	10	-	103474177	103474175	82	17894	1	0	c	bkpt.assoc.cn.change	copy.number.visual.inspection	bkpt.assoc.cn.change	c	HIGH	yellow	LATE
6524	10	107948843	107949124	10	108927994	108928296	-	+	4	17	9	(ch)	10	-	107949034	107949031	ATT	null	10	-	108928099	108928096	95	979065	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
6601	11	1110015	1110170	11	1220528	1220713	-	+	4	13	6	(ch)	11	-	1110064	1110063	A	null	11	-	1220632	1220631	79	110568	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
6621	11	9029779	9030007	11	9332081	9332341	-	+	4	9	8	(ch)	11	-	9029920	9029912	GGTGACTG	null	11	-	9332177	9332169	99	302257	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
6622	11	9331964	9332286	11	9380576	9380866	-	+	4	10	3	(ch)	11	-	9332153	0	null	AGAGTAC	11	-	9380669	0	99	48516	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
6624	11	10238050	10238336	11	12343062	12343351	-	+	4	7	4	(ch)	11	-	10238222	10238218	TGGT	null	11	-	12343156	12343152	100	2104934	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
6650	11	19521916	19522157	11	19582255	19582508	-	+	4	19	6	(ch)	11	-	19522058	19522056	CT	null	11	-	19582355	19582353	98	60297	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
6720	11	31762682	31763001	11	32138247	32138507	-	-	8	7	5	(ch)	11	-	31762899	0	null	null	11	+	32138419	0	99	375520	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
6724	11	32114945	32115238	11	32201348	32201667	+	+	1	10	2	(ch)	11	+	32115103	32115109	CAGGTG	null	11	-	32201447	32201441	100	86344	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
6737	11	36544697	36544938	11	37033605	37033866	-	+	4	13	9	(ch)	11	-	36544842	36544841	A	null	11	-	37033708	37033707	95	488866	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
6748	11	37960510	37960774	11	38232109	38232352	-	+	4	15	11	(ch)	11	-	37960666	37960662	ATAA	null	11	-	38232205	38232201	98	271539	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
6781	11	47231105	47231393	11	47303005	47303304	-	+	4	14	1	(ch)	11	-	47231280	0	null	null	11	-	47303098	0	99	71818	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
6814	11	63970302	63970550	11	64105442	64105733	-	+	4	15	2	(ch)	11	-	63970455	63970454	A	null	11	-	64105542	64105541	99	135087	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
6815	11	64031956	64032236	11	64125255	64125497	-	+	4	21	8	(ch)	11	-	64032148	64032146	CA	null	11	-	64125356	64125354	93	93208	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
6817	11	64548365	64548604	17	38021966	38022220	-	+	32	27	8	(ch)	11	-	64548511	64548507	GAGA	null	17	-	38022062	38022058	100	NA	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
6822	11	66924416	66924726	11	67182823	67183134	-	+	4	5	3	(ch)	11	-	66924599	66924597	GT	null	11	-	67182921	67182919	97	258322	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
6823	11	67025256	67025599	11	67838779	67839110	-	+	4	10	2	(ch)	11	-	67025495	0	null	GT	11	-	67838905	0	100	813410	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
6829	11	70118863	70119093	11	70870475	70870725	+	-	2	14	5	(ch)	11	+	70118968	70118974	AAAAAA	null	11	+	70870635	70870641	100	751667	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
6830	11	70766190	70766479	11	71547935	71548246	-	+	4	9	2	(ch)	11	-	70766377	70766374	CAT	null	11	-	71548036	71548033	99	781659	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
6844	11	75389582	75389896	11	76253527	76253794	-	+	4	9	2	(ch)	11	-	75389780	75389777	GGT	null	11	-	76253621	76253618	99	863841	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
6848	11	76900763	76901109	11	77353066	77353406	-	+	4	10	1	(ch)	11	-	76900959	76900957	TT	null	11	-	77353161	77353159	61	452202	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
6854	11	82593532	82593843	11	82720151	82720470	-	+	4	12	1	(ch)	11	-	82593675	82593652	TCCCAGCTACTTGGGAGGCTGAG	null	11	-	82720244	82720221	94	126569	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
6866	11	85780292	85780558	11	87157458	87157763	-	+	4	10	1	(ch)	11	-	85780461	0	null	null	11	-	87157555	0	100	1377094	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
6931	11	106343816	106344105	11	106347392	106347698	-	-	8	24	17	(ch)	11	-	106344007	106344006	T	null	11	+	106347568	106347569	94	3561	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
6934	11	106419300	106419573	11	119479517	119479809	-	+	4	30	11	(ch)	11	-	106419462	106419460	AA	null	11	-	119479624	119479622	99	13060162	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
6936	11	106518379	106518668	11	119088266	119088535	+	-	2	22	7	(ch)	11	+	106518482	0	null	TGTATGGCTGCTGATGAGGCCC	11	+	119088436	0	100	12569954	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
6941	11	107730119	107730422	11	107900962	107901262	-	+	4	5	4	(ch)	11	-	107730276	0	null	TATCT	11	-	107901059	0	99	170783	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
6967	11	113448994	113449283	11	113634098	113634327	-	+	4	29	6	(ch)	11	-	113449186	113449183	TGT	null	11	-	113634195	113634192	100	185009	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
6968	11	113495817	113496108	11	113928171	113928490	-	+	4	4	3	(ch)	11	-	113496008	0	null	ATT	11	-	113928292	0	98	432284	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
6971	11	113904020	113904315	11	114211368	114211619	-	+	4	8	5	(ch)	11	-	113904223	113904219	TGCC	null	11	-	114211460	114211456	100	307237	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
6972	11	113941184	113941438	11	114057508	114057744	-	+	4	36	11	(ch)	11	-	113941348	113941346	TG	null	11	-	114057601	114057599	99	116253	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
6984	11	116540244	116540473	11	116629836	116630104	-	+	4	10	8	(ch)	11	-	116540372	116540367	ACATC	null	11	-	116629939	116629934	99	89567	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
6990	11	118133088	118133334	11	118279334	118279646	-	+	4	12	5	(ch)	11	-	118133232	118133230	AC	null	11	-	118279438	118279436	70	146206	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
6993	11	118486446	118486707	11	118666670	118666966	-	+	4	19	4	(ch)	11	-	118486588	118486584	TGAT	null	11	-	118666762	118666758	96	180174	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
6997	11	119089987	119090270	11	119480558	119480828	+	+	1	15	9	(ch)	11	+	119090090	119090093	AAA	null	11	-	119480676	119480673	94	390586	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
6998	11	119089847	119090190	11	119479470	119479753	-	-	8	19	8	(ch)	11	-	119090106	119090104	CT	null	11	+	119479617	119479619	94	389511	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
7038	11	129778995	129779298	11	130186677	130186980	-	+	4	12	3	(ch)	11	-	129779152	129779150	GC	null	11	-	130186772	130186770	93	407620	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
7039	11	129850665	129851023	11	130225895	130226234	+	-	2	7	0	(c-)	11	+	129850856	129850857	C	null	11	+	130226121	130226122	94	375265	1	0	c	bkpt.assoc.cn.change	copy.number.visual.inspection	bkpt.assoc.cn.change	c	HIGH	yellow	LATE
7056	12	60198	60610	13	43206590	43206950	+	-	32	10	5	(ch)	12	+	60296	60298	CT	null	13	+	43206789	43206791	79	NA	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
7059	12	3127079	3127452	12	3325427	3325795	-	+	4	9	6	(ch)	12	-	3127347	3127345	AA	null	12	-	3325630	3325628	100	198283	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
7067	12	6702990	6703211	12	7004391	7004621	-	+	4	10	2	(ch)	12	-	6703120	6703116	TGAG	null	12	-	7004482	7004478	99	301362	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
7085	12	11660890	11661148	12	46370935	46371212	-	-	8	28	6	(ch)	12	-	11661034	11661032	GT	null	12	+	46371113	46371115	99	34710079	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
7087	12	11767381	11767661	12	46371824	46372067	+	+	1	18	6	(ch)	12	+	11767474	0	null	CA	12	-	46371937	0	99	34604463	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
7108	12	18426362	18426724	12	18838345	18838720	-	+	4	7	1	(ch)	12	-	18426611	18426609	AT	null	12	-	18838556	18838554	86	411945	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
7201	12	46371786	46372030	12	46569474	46569705	-	+	4	16	6	(ch)	12	-	46371937	46371935	GA	null	12	-	46569567	46569565	99	197630	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
7209	12	47765973	47766280	12	47893232	47893539	-	+	4	7	4	(ch)	12	-	47766160	47766158	CA	null	12	-	47893372	47893370	99	127212	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
7214	12	48871716	48871982	15	59204197	59204454	-	+	32	16	6	(ch)	12	-	48871872	0	null	TGTATGTTG	15	-	59204295	0	90	NA	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
7215	12	49194858	49195119	15	57839294	57839565	+	-	32	22	9	(ch)	12	+	49194946	49194952	ACAGCA	null	15	+	57839465	57839471	99	NA	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
7257	12	63297925	63298269	12	63391457	63391731	-	+	4	11	4	(ch)	12	-	63298151	63298148	TGC	null	12	-	63391574	63391571	99	93423	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
7317	12	79958343	79958613	12	80012517	80012799	-	+	4	21	5	(ch)	12	-	79958518	79958517	T	null	12	-	80012617	80012616	99	54099	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
7389	12	100684585	100684872	12	100968212	100968501	+	-	2	4	1	(ch)	12	+	100684687	0	null	AA	12	+	100968403	0	100	283716	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
7406	12	104222513	104222771	12	104302650	104302928	-	+	4	24	7	(ch)	12	-	104222662	104222659	CTA	null	12	-	104302744	104302741	70	80082	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
7415	12	106573116	106573394	12	106797933	106798159	-	+	4	15	2	(ch)	12	-	106573304	106573300	AGCC	null	12	-	106798033	106798029	100	224729	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
7427	12	110925785	110926213	12	111152463	111152988	-	+	4	5	0	(c-)	12	-	110926085	110926083	GC	null	12	-	111152754	111152752	96	226669	1	0	c	bkpt.assoc.cn.change	copy.number.visual.inspection	bkpt.assoc.cn.change	c	HIGH	yellow	LATE
7434	12	112468342	112468611	12	112624520	112624852	-	+	4	17	13	(ch)	12	-	112468512	0	null	TT	12	-	112624620	0	97	156108	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
7468	12	121358654	121358916	12	122236792	122237050	-	+	4	9	3	(ch)	12	-	121358823	121358821	AC	null	12	-	122236901	122236899	99	878078	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
7473	12	122282602	122282973	12	122855201	122855536	-	+	4	8	4	(ch)	12	-	122282792	122282789	ATT	null	12	-	122855298	122855295	98	572506	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
7479	12	123743891	123744226	12	124273307	124273633	-	+	4	8	2	(ch)	12	-	123744137	123744131	GGTCTC	null	12	-	124273464	124273458	100	529327	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
7571	13	49778495	49778789	13	49983351	49983655	-	+	4	17	5	(ch)	13	-	49778682	49778681	T	null	13	-	49983456	49983455	96	204774	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
7573	13	49786727	49786989	13	49795144	49795411	+	-	2	18	4	(ch)	13	+	49786830	49786833	CTG	null	13	+	49795314	49795317	99	8484	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
7578	13	51566056	51566352	13	52248226	52248636	-	+	4	11	7	(ch)	13	-	51566254	0	null	TATCTAGTGGCTTTGGTTTTTGCAGAGGGAAGATTCACTTTTCCACTACAGAAGGGCAGGAATTTTTAAAGTCCTTTGAGGTTAACAAAAATTTCTACATGTGAAGGGAGGTGTGGAAAAGTGGCAGACTACT	13	-	52248332	0	94	682078	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
7723	13	79476484	79476758	13	80973599	80973607	-	+	4	13	6	(ch)	13	-	79476659	79476657	CA	null	13	-	80973692	80973690	85	1497033	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
7742	13	81827186	81827462	13	85513528	85513797	-	+	4	14	3	(ch)	13	-	81827377	81827372	TGGGA	null	13	-	85513631	85513626	100	3686254	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
7775	13	84619716	84620078	13	84657485	84657775	-	+	4	6	0	(c-)	13	-	84619984	0	null	T	13	-	84657653	0	100	37669	1	0	c	bkpt.assoc.cn.change	copy.number.visual.inspection	bkpt.assoc.cn.change	c	HIGH	yellow	LATE
7819	13	91294787	91295035	13	91331205	91331501	-	+	4	5	0	(c-)	13	-	91294907	0	null	null	13	-	91331303	0	100	36396	1	0	c	bkpt.assoc.cn.change	copy.number.visual.inspection	bkpt.assoc.cn.change	c	HIGH	yellow	LATE
7841	13	95092928	95093246	13	95483111	95483388	-	+	4	15	8	(ch)	13	-	95093126	95093124	CT	null	13	-	95483220	95483218	99	390094	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
7863	13	100593039	100593334	13	100689923	100690243	-	+	4	16	7	(ch)	13	-	100593270	100593259	TGAGCCGAGAT	null	13	-	100690061	100690050	95	96791	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
7917	13	111211175	111211519	13	111359098	111359377	-	+	4	4	0	(c-)	13	-	111211411	0	null	null	13	-	111359208	0	93	147797	1	0	c	bkpt.assoc.cn.change	copy.number.visual.inspection	bkpt.assoc.cn.change	c	HIGH	yellow	LATE
7963	14	37358544	37358824	14	37587908	37588195	+	-	2	5	0	(c-)	14	+	37358655	37358656	T	null	14	+	37588072	37588073	100	229417	1	0	c	bkpt.assoc.cn.change	copy.number.visual.inspection	bkpt.assoc.cn.change	c	HIGH	yellow	LATE
7983	14	45972419	45972636	14	45991613	45991862	-	+	4	38	7	(ch)	14	-	45972549	45972547	GT	null	14	-	45991703	45991701	87	19154	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
8007	14	55914171	55914440	14	55999594	55999875	-	+	4	28	5	(ch)	14	-	55914302	55914300	CT	null	14	-	55999698	55999696	85	85396	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
8008	14	55970619	55970917	14	56219296	56219654	-	+	4	9	1	(ch)	14	-	55970800	55970797	CAG	null	14	-	56219435	56219432	99	248635	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
8012	14	56217431	56217798	14	56218781	56219097	+	-	2	9	0	(c-)	14	+	56217531	56217533	AC	null	14	+	56218937	56218939	70	1406	1	0	c	bkpt.assoc.cn.change	copy.number.visual.inspection	bkpt.assoc.cn.change	c	HIGH	yellow	LATE
8043	14	66385460	66385710	18	19987529	19987815	+	-	32	21	6	(ch)	14	+	66385551	0	null	null	18	+	19987716	0	100	NA	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
8044	14	66389767	66390017	18	20614581	20614853	-	+	32	14	9	(ch)	14	-	66389920	66389919	A	null	18	-	20614695	20614694	99	NA	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
8052	14	68985474	68985777	14	69611818	69612141	-	+	4	18	9	(ch)	14	-	68985676	68985674	GC	null	14	-	69611933	69611931	98	626257	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
8066	14	73314739	73315076	14	74203978	74204305	-	+	4	9	4	(ch)	14	-	73314975	0	null	TTGTCCT	14	-	74204086	0	100	889111	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
8094	14	83534125	83534535	14	106523333	106523737	-	+	4	5	0	(c-)	14	-	83534331	83534326	TGAAT	null	14	-	106523427	106523422	97	22989096	1	1	ch	bkpt.assoc.cn.change	copy.number.visual.inspection	bkpt.assoc.cn.change	ch	HIGH	grey	EARLY
8121	14	91681360	91681646	14	92145150	92145429	-	+	4	27	6	(ch)	14	-	91681546	91681542	AACA	null	14	-	92145242	92145238	94	463696	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
8155	14	102332178	102332427	14	103048655	103048941	+	-	2	14	20	(ch)	14	+	102332272	102332274	CT	null	14	+	103048836	103048838	75	716564	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
8165	15	20525297	20525748	15	24817944	24818361	-	+	4	8	2	(ch)	15	-	20525529	0	null	CCTA	15	-	24818040	0	97	4292511	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
8185	15	25588065	25588306	15	25620933	25621211	+	-	2	22	5	(ch)	15	+	25588154	25588158	ATGA	null	15	+	25621110	25621114	100	32956	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
8224	15	41042320	41042569	15	41390402	41390652	-	+	4	25	6	(ch)	15	-	41042476	41042475	A	null	15	-	41390494	41390493	95	348018	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
8225	15	41043073	41043321	15	41045375	41045621	+	-	2	21	5	(ch)	15	+	41043165	0	null	null	15	+	41045505	0	99	2340	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
8235	15	44623720	44624000	15	44719915	44720192	-	+	4	19	6	(ch)	15	-	44623901	44623898	ACT	null	15	-	44720014	44720011	100	96113	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
8270	15	52901766	52902075	15	53023118	53023413	-	+	4	10	1	(ch)	15	-	52901981	52901979	TG	null	15	-	53023241	53023239	98	121260	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
8282	15	55834920	55835103	15	56054378	56054403	-	+	4	15	4	(ch)	15	-	55835037	55835015	TCCTGCCTCAGCCTCCTGAGTA	null	15	-	56054457	56054435	98	219420	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
8296	15	59031407	59031725	15	59099808	59100173	-	+	4	9	2	(ch)	15	-	59031622	59031621	G	null	15	-	59099950	59099949	99	68328	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
8301	15	60693052	60693322	15	61224698	61225006	-	+	4	18	6	(ch)	15	-	60693200	60693197	GTG	null	15	-	61224790	61224787	99	531590	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
8352	15	86214758	86215029	15	86245356	86245683	-	+	4	8	1	(ch)	15	-	86214934	0	null	CTAT	15	-	86245462	0	94	30528	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
8398	16	1324502	1324788	16	1357429	1357687	-	+	4	20	3	(ch)	16	-	1324696	1324695	A	null	16	-	1357524	1357523	94	32828	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
8399	16	2452910	2453129	16	3034061	3034313	-	+	4	18	7	(ch)	16	-	2453058	2453040	CCCAGGCTGGAGTGCAGT	null	16	-	3034181	3034163	83	581123	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
8434	16	13645585	13645860	16	14036386	14036694	-	+	4	13	5	(ch)	16	-	13645758	13645756	CA	null	16	-	14036511	14036509	99	390753	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
8435	16	13688203	13688551	X	29698938	29699279	+	-	32	6	0	(c-)	16	+	13688299	13688301	GA	null	X	+	29699117	29699119	68	NA	1	0	c	bkpt.assoc.cn.change	copy.number.visual.inspection	bkpt.assoc.cn.change	c	HIGH	yellow	LATE
8440	16	14412805	14413202	16	14491553	14491882	+	-	2	1	5	(ch)	16	+	14412890	14412911	ATTCTCCTGCCTCAGCCTCCC	null	16	+	14491682	14491703	98	78792	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
8442	16	14491493	14491884	16	14495461	14495820	+	+	1	4	3	(ch)	16	+	14491675	14491679	CAAG	null	16	-	14495557	14495553	84	3882	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
8452	16	19067486	19067783	16	19237392	19237704	-	+	4	12	3	(ch)	16	-	19067684	19067682	GT	null	16	-	19237491	19237489	99	169807	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
8458	16	20645886	20646158	16	20696674	20696953	-	+	4	11	0	(c-)	16	-	20646065	20646063	AC	null	16	-	20696809	20696807	100	50744	1	0	c	bkpt.assoc.cn.change	copy.number.visual.inspection	bkpt.assoc.cn.change	c	HIGH	yellow	LATE
8493	16	30685805	30686208	16	31019948	31020287	-	+	4	9	6	(ch)	16	-	30686110	30686103	CCAAAGT	null	16	-	31020114	31020107	70	334004	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
8492	16	30686255	30686658	16	30723198	30723612	+	-	2	5	3	(ch)	16	+	30686362	30686365	AAA	null	16	+	30723411	30723414	80	37049	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
8495	16	30763265	30763634	16	30826248	30826646	-	+	4	16	3	(ch)	16	-	30763435	0	null	GGAGG	16	-	30826342	0	99	62907	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
8497	16	31713069	31713332	16	31828789	31829061	-	+	4	19	5	(ch)	16	-	31713232	0	null	AATG	16	-	31828880	0	100	115648	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
8535	16	56551536	56551839	16	57215480	57215786	-	+	4	19	6	(ch)	16	-	56551756	0	null	TGTCTTAAAAAAAAAAAATTATATATATATAACAAGAATGAAGAGAGACATTTACTG	16	-	57215572	0	99	663816	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
8586	16	66880295	66880575	16	66887562	66887825	+	-	2	23	4	(ch)	16	+	66880386	0	null	AAA	16	+	66887724	0	99	7338	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
8600	16	70301674	70301984	16	70698648	70698972	-	+	4	12	2	(ch)	16	-	70301880	0	null	null	16	-	70698765	0	100	396885	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
8633	16	77428370	77428624	16	78078544	78078793	-	+	4	14	4	(ch)	16	-	77428534	77428532	TT	null	16	-	78078636	78078634	92	650102	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
8634	16	78136988	78137282	16	78312432	78312688	-	+	4	21	9	(ch)	16	-	78137174	78137172	TT	null	16	-	78312542	78312540	95	175368	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
8654	16	85511831	85512238	16	85581551	85581966	+	-	2	11	4	(ch)	16	+	85511935	85511938	CAG	null	16	+	85581740	85581743	79	69805	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
8661	16	89376141	89376388	16	89564388	89564655	+	-	2	19	5	(ch)	16	+	89376240	89376242	GC	null	16	+	89564562	89564564	98	188322	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
8666	17	1094213	1094540	17	1141401	1141698	+	-	2	9	2	(ch)	17	+	1094307	1094311	CGGC	null	17	+	1141567	1141571	97	47260	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
8677	17	7209121	7209427	17	7440517	7440795	-	+	4	11	6	(ch)	17	-	7209331	7209326	ATTTT	null	17	-	7440617	7440612	99	231286	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
8689	17	16239335	16239592	17	16290668	16290907	-	+	4	11	5	(ch)	17	-	16239499	16239491	CGCCCGGC	null	17	-	16290765	16290757	99	51266	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
8699	17	21819336	21819627	17	21941001	21941274	-	+	4	14	8	(ch)	17	-	21819503	0	null	TCC	17	-	21941104	0	99	121601	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
8705	17	27013486	27013723	17	30806956	30807278	-	-	8	23	6	(ch)	17	-	27013623	27013622	G	null	17	+	30807178	30807179	99	3793555	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
8707	17	27111609	27111848	17	30724059	30724287	-	+	4	9	7	(ch)	17	-	27111762	27111742	ATTCTCCTGCCTCAGCCTCC	null	17	-	30724143	30724123	89	3612381	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
8709	17	27262276	27262536	17	30441319	30441547	+	-	2	26	10	(ch)	17	+	27262366	27262369	GTA	null	17	+	30441438	30441441	94	3179072	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
8714	17	29537288	29537525	17	29676132	29676418	-	+	4	18	9	(ch)	17	-	29537422	29537421	A	null	17	-	29676234	29676233	95	138812	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
8722	17	30849780	30850158	17	30884664	30885076	+	+	1	11	7	(ch)	17	+	30849966	30849967	T	null	17	-	30884791	30884790	99	34825	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
8725	17	33957680	33957963	17	34130677	34130928	-	+	4	4	1	(ch)	17	-	33957867	33957861	CTAGAT	null	17	-	34130769	34130763	99	172902	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
8731	17	35862453	35862734	17	35936226	35936482	-	+	4	18	7	(ch)	17	-	35862641	0	null	ACTA	17	-	35936329	0	99	73688	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
8735	17	37710340	37710614	17	38213402	38213647	-	+	4	40	8	(ch)	17	-	37710522	37710521	C	null	17	-	38213515	38213514	97	502993	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
8742	17	38832613	38832888	17	40239438	40239698	-	+	4	16	7	(ch)	17	-	38832792	38832789	GAT	null	17	-	40239543	40239540	99	1406751	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
8747	17	40448840	40449131	17	40449532	40449838	+	-	2	6	2	(ch)	17	+	40448966	0	null	null	17	+	40449740	0	90	774	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
8749	17	41813057	41813293	17	41909602	41909839	-	+	4	0	8	(-h)	17	-	41813204	41813200	GACA	null	17	-	41909705	41909701	93	96501	0	1	h	bkpt.assoc.cn.change	copy.number.visual.inspection	bkpt.assoc.cn.change	h	HIGH	blue	LATE
8758	17	44853044	44853327	17	44912541	44912816	-	+	4	16	8	(ch)	17	-	44853223	0	null	CCACTGCACTCAAACCTAGGCG	17	-	44912615	0	99	59392	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
8780	17	55099535	55099810	17	55262250	55262541	-	+	4	8	2	(ch)	17	-	55099729	55099719	GCCTGTAATC	null	17	-	55262360	55262350	82	162631	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
8781	17	55135284	55135565	17	55137229	55137540	+	-	2	8	4	(ch)	17	+	55135378	0	null	null	17	+	55137439	0	75	2061	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
8791	17	58457776	58458024	17	58983579	58983839	-	+	4	21	4	(ch)	17	-	58457917	0	null	A	17	-	58983672	0	100	525755	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
8803	17	61487091	61487448	20	29946485	29946820	-	-	32	10	3	(ch)	17	-	61487300	61487296	CCAG	null	20	+	29946723	29946727	98	NA	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
8804	17	61753779	61754006	20	30147865	30148130	+	+	32	21	5	(ch)	17	+	61753872	61753877	TACAA	null	20	-	30147955	30147950	100	NA	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
8826	17	70823517	70823754	17	71396431	71396688	-	+	4	43	10	(ch)	17	-	70823663	70823661	AA	null	17	-	71396525	71396523	97	572862	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
8828	17	72277922	72278279	17	77418451	77418747	-	+	4	19	0	(c-)	17	-	72278131	0	null	T	17	-	77418544	0	99	5140413	1	1	ch	bkpt.assoc.cn.change	copy.number.visual.inspection	bkpt.assoc.cn.change	ch	HIGH	grey	EARLY
8829	17	72455787	72456060	17	72464623	72464921	+	+	1	29	8	(ch)	17	+	72455879	72455880	G	null	17	-	72464716	72464715	85	8837	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
8832	17	72835640	72835913	17	73707447	73707695	-	+	4	24	1	(ch)	17	-	72835805	72835802	CCC	null	17	-	73707542	73707539	99	871737	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
8833	17	72879812	72880133	17	72880582	72880902	+	-	2	23	4	(ch)	17	+	72879910	0	null	null	17	+	72880772	0	74	862	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
8837	17	74414306	74414572	17	74602531	74602854	-	+	4	17	7	(ch)	17	-	74414478	74414475	GCT	null	17	-	74602647	74602644	98	188169	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
8840	17	76000272	76000517	17	76645705	76645968	-	+	4	18	10	(ch)	17	-	76000416	76000413	GCT	null	17	-	76645802	76645799	98	645386	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
8847	17	79909201	79909429	17	80045396	80045638	-	+	4	64	12	(ch)	17	-	79909323	0	null	null	17	-	80045492	0	93	136169	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
8850	17	79967110	79967427	17	80114509	80114767	-	+	4	12	5	(ch)	17	-	79967330	79967328	GG	null	17	-	80114607	80114605	99	147277	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
8857	17	80088453	80088732	17	80098459	80098722	+	-	2	27	7	(ch)	17	+	80088547	80088548	T	null	17	+	80098613	80098614	92	10066	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
8862	18	969339	969638	18	1173627	1173925	-	+	4	7	1	(ch)	18	-	969543	969539	TGGG	null	18	-	1173727	1173723	100	204184	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
8884	18	10273100	10273350	18	10280797	10281095	+	-	2	18	2	(ch)	18	+	10273187	10273189	AG	null	18	+	10280989	10280991	97	7802	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
8965	18	44667582	44667872	18	44818324	44818333	-	+	4	25	8	(ch)	18	-	44667765	44667764	A	null	18	-	44818417	44818416	99	150652	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
8970	18	47023356	47023680	18	47039797	47040146	+	-	2	8	3	(ch)	18	+	47023493	47023500	GTGATCC	null	18	+	47040044	47040051	97	16551	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
8992	18	57665256	57665515	18	58069321	58069603	-	+	4	17	15	(ch)	18	-	57665423	57665420	GAA	null	18	-	58069427	58069424	95	404004	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
9043	19	803679	803988	19	938371	938656	-	+	4	25	11	(ch)	19	-	803900	803896	GCGA	null	19	-	938464	938460	85	134564	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
9044	19	811754	812067	19	827506	827820	+	-	2	15	4	(ch)	19	+	811878	0	null	GACT	19	+	827707	0	98	15829	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
9045	19	1145112	1145403	19	1236174	1236509	-	+	4	11	0	(c-)	19	-	1145283	1145281	TG	null	19	-	1236268	1236266	82	90985	1	1	ch	bkpt.assoc.cn.change	copy.number.visual.inspection	bkpt.assoc.cn.change	ch	HIGH	grey	EARLY
9046	19	1541684	1542021	19	1568825	1569140	-	+	4	11	2	(ch)	19	-	1541926	1541918	GGCACAGA	null	19	-	1568932	1568924	93	27006	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
9048	19	1626665	1626967	19	2450330	2450598	+	+	1	19	7	(ch)	19	+	1626753	1626755	AC	null	19	-	2450433	2450431	98	823680	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
9051	19	1994737	1995110	19	2110929	2111225	-	+	4	11	1	(ch)	19	-	1994987	0	null	CGTGAGGCACGGAGA	19	-	2111027	0	88	116040	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
9052	19	2210285	2210581	19	2405936	2406278	-	+	4	7	1	(ch)	19	-	2210470	2210469	C	null	19	-	2406067	2406066	98	195597	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
9058	19	3156307	3156615	19	3627450	3627749	-	+	4	22	2	(ch)	19	-	3156522	3156519	GCA	null	19	-	3627552	3627549	87	471030	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
9059	19	3241429	3241720	19	3689938	3690164	-	+	4	18	9	(ch)	19	-	3241632	3241629	CAG	null	19	-	3690027	3690024	88	448395	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
9087	19	11412392	11412698	19	11421136	11421443	+	-	2	8	5	(ch)	19	+	11412497	11412499	TT	null	19	+	11421340	11421342	95	8843	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
9088	19	11441226	11441491	19	11456495	11456744	+	+	1	12	2	(ch)	19	+	11441324	11441327	AAG	null	19	-	11456600	11456597	100	15276	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
9092	19	11827629	11827951	19	11964249	11964612	-	+	4	6	9	(ch)	19	-	11827810	11827807	ATC	null	19	-	11964352	11964349	100	136542	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
9097	19	15445173	15445479	19	15567136	15567460	+	-	2	13	3	(ch)	19	+	15445269	15445271	AG	null	19	+	15567345	15567347	98	122076	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
9105	19	18350408	18350724	19	18554353	18554604	-	+	4	23	2	(ch)	19	-	18350629	18350626	CCT	null	19	-	18554455	18554452	94	203826	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
9106	19	18681757	18682060	19	18799743	18800062	-	-	8	5	1	(ch)	19	-	18681911	18681904	GACCTCA	null	19	+	18799985	18799992	96	118074	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
9107	19	18796934	18797245	19	18826968	18827260	+	+	1	5	6	(ch)	19	+	18797032	18797035	TCA	null	19	-	18827064	18827061	100	30032	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
9150	19	39870510	39870989	19	39904464	39904963	-	+	4	4	0	(c-)	19	-	39870859	0	null	null	19	-	39904734	0	99	33875	1	0	c	bkpt.assoc.cn.change	copy.number.visual.inspection	bkpt.assoc.cn.change	c	HIGH	yellow	LATE
9157	19	42091056	42091338	19	42331375	42331611	-	+	4	16	5	(ch)	19	-	42091243	42091239	GTCT	null	19	-	42331467	42331463	100	240224	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
9172	19	48482977	48483219	19	48488936	48489198	+	-	2	7	8	(ch)	19	+	48483070	0	null	AGAAT	19	+	48489107	0	94	6037	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
9181	19	50533423	50533698	19	50926932	50927193	-	+	4	29	9	(ch)	19	-	50533677	0	null	GCTCCAACCTCAGCCTCTGAAGCAGCTGGGACTACAAGCATGTGCCAGCACATCCAGCTAATCTTTTTCACTTTTTGTAGGGACAG	19	-	50927027	0	99	393350	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
9180	19	50534007	50534269	19	53761240	53761517	+	-	2	17	6	(ch)	19	+	50534100	50534102	TG	null	19	+	53761419	53761421	83	3227319	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
9195	19	54079311	54079594	19	54172064	54172396	-	+	4	5	4	(ch)	19	-	54079495	54079494	A	null	19	-	54172180	54172179	99	92685	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
9211	19	58675805	58676094	19	58806237	58806569	-	+	4	7	4	(ch)	19	-	58676001	58675998	GCA	null	19	-	58806333	58806330	95	130332	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
9222	20	4635068	4635340	20	4716717	4717011	-	+	4	9	4	(ch)	20	-	4635243	0	null	GGTA	20	-	4716835	0	99	81592	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
9224	20	5061154	5061427	20	5275488	5275745	-	+	4	14	13	(ch)	20	-	5061331	5061329	TG	null	20	-	5275596	5275594	88	214265	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
9308	20	30601779	30602078	20	31002548	31002815	-	+	4	16	7	(ch)	20	-	30601973	30601970	GTG	null	20	-	31002642	31002639	94	400669	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
9309	20	30651791	30652117	20	30750792	30751124	-	+	4	14	7	(ch)	20	-	30651997	30651992	ATCTC	null	20	-	30750891	30750886	93	98894	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
9323	20	36899549	36899930	20	37154803	37155113	-	-	8	10	4	(ch)	20	-	36899823	36899822	C	null	20	+	37154943	37154944	95	255120	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
9325	20	37159533	37159769	X	101300464	101300701	+	+	32	8	4	(ch)	20	+	37159632	37159635	AAC	null	X	-	101300552	101300549	99	NA	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
9341	20	40158964	40159241	20	40669283	40669576	-	+	4	10	5	(ch)	20	-	40159145	0	null	ACAAAAAACTAA	20	-	40669404	0	95	510259	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
9352	20	42072810	42073113	20	42237567	42237846	-	+	4	19	8	(ch)	20	-	42073003	42073001	CT	null	20	-	42237662	42237660	94	164659	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
9361	20	43737544	43737814	20	43763173	43763392	+	-	2	15	9	(ch)	20	+	43737643	43737645	TC	null	20	+	43763301	43763303	99	25658	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
9363	20	44005781	44006085	20	44583791	44584106	-	+	4	12	5	(ch)	20	-	44005953	44005950	CTC	null	20	-	44583890	44583887	97	577937	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
9379	20	48862472	48862762	20	49024862	49025117	-	+	4	9	0	(c-)	20	-	48862658	48862653	TGTGG	null	20	-	49024959	49024954	98	162301	1	0	c	bkpt.assoc.cn.change	copy.number.visual.inspection	bkpt.assoc.cn.change	c	HIGH	yellow	LATE
9383	20	49107337	49107624	20	49622081	49622342	+	+	1	19	5	(ch)	20	+	49107435	49107437	AG	null	20	-	49622176	49622174	93	514741	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
9406	20	54748355	54748591	20	54752907	54753179	-	+	4	26	10	(ch)	20	-	54748490	0	null	G	20	-	54752996	0	100	4506	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
9418	20	57461889	57462157	20	57553013	57553294	-	+	4	8	7	(ch)	20	-	57462053	57462051	AA	null	20	-	57553103	57553101	94	91050	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
9430	20	58929212	58929502	20	59908256	59908500	+	-	2	4	9	(ch)	20	+	58929302	58929304	TC	null	20	+	59908386	59908388	99	979084	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
9431	20	58932120	58932418	20	58945463	58945783	-	-	8	11	11	(ch)	20	-	58932320	0	null	TTT	20	+	58945678	0	94	13358	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
9432	20	58964970	58965364	20	58992581	58992932	-	+	4	10	0	(c-)	20	-	58965170	58965167	CCC	null	20	-	58992676	58992673	70	27506	1	0	c	bkpt.assoc.cn.change	copy.number.visual.inspection	bkpt.assoc.cn.change	c	HIGH	yellow	LATE
9437	20	59451665	59451993	20	60134249	60134493	+	-	2	9	4	(ch)	20	+	59451754	59451758	AGAA	null	20	+	60134378	60134382	98	682624	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
9508	21	20325414	20325565	21	20639206	20639411	-	+	4	34	13	(ch)	21	-	20325469	20325465	ATTA	null	21	-	20639301	20639297	95	313832	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
9611	21	34752256	34752507	21	34806610	34806893	+	+	1	15	7	(ch)	21	+	34752347	34752349	GC	null	21	-	34806716	34806714	99	54369	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
9612	21	34792228	34792561	21	34808916	34809202	-	-	8	11	5	(ch)	21	-	34792451	0	null	TT	21	+	34809087	0	98	16636	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
9616	21	35362177	35362450	21	35538101	35538385	-	+	4	4	1	(ch)	21	-	35362356	0	null	CCCACCC	21	-	35538246	0	99	175890	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
9622	21	35807762	35808011	21	35819195	35819466	+	-	2	21	11	(ch)	21	+	35807868	35807870	GA	null	21	+	35819370	35819372	94	11502	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
9680	22	24025698	24025937	22	24184043	24184310	-	+	4	10	7	(ch)	22	-	24025850	24025846	CCAG	null	22	-	24184145	24184141	95	158295	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
9689	22	29652809	29653159	22	29901974	29902343	-	+	4	13	7	(ch)	22	-	29653060	0	null	ATTACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGAGTGGATCACCTGAGC	22	-	29902078	0	98	249018	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
9690	22	29655890	29656192	22	30008963	30009238	-	+	4	20	11	(ch)	22	-	29656086	29656083	TGG	null	22	-	30009055	30009052	99	352969	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
9699	22	33754808	33755108	22	33758479	33758758	+	-	2	0	5	(-h)	22	+	33754918	0	null	null	22	+	33758649	0	98	3731	0	1	h	bkpt.assoc.cn.change	copy.number.visual.inspection	bkpt.assoc.cn.change	h	HIGH	blue	LATE
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9725	X	3362099	3362505	X	19578296	19578765	-	-	8	4	0	(c-)	X	-	3362346	0	null	CGCGACACCAGCCTCGGGCAGACCCCCGCATGTGCAGAGGGTGCGCACAGCAGGCAGGGCGCGGTGACCAGCAGAAATGACCCTCGCCCCCAC	X	+	19578640	0	98	16216294	1	0	c	bkpt.assoc.cn.change	copy.number.visual.inspection	bkpt.assoc.cn.change	c	HIGH	yellow	LATE
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9753	X	5735138	5735537	X	9063973	9064373	-	+	4	4	0	(c-)	X	-	5735440	0	null	ATTATTTATTTCTAAATGT	X	-	9064163	0	90	3328723	1	0	c	bkpt.assoc.cn.change	copy.number.visual.inspection	bkpt.assoc.cn.change	c	HIGH	yellow	LATE
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9769	X	6396065	6396456	X	19332596	19332917	-	+	4	9	0	(c-)	X	-	6396284	0	null	TATTTT	X	-	19332693	0	99	12936409	1	0	c	bkpt.assoc.cn.change	copy.number.visual.inspection	bkpt.assoc.cn.change	c	HIGH	yellow	LATE
9770	X	6408518	6408898	X	11336592	11336990	+	-	2	5	0	(c-)	X	+	6408688	0	null	TTTATTTATAATTTAGGAAATTATATTATATA	X	+	11336891	0	100	4928203	1	0	c	bkpt.assoc.cn.change	copy.number.visual.inspection	bkpt.assoc.cn.change	c	HIGH	yellow	LATE
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9799	X	9283245	9283542	X	15029170	15029508	+	+	1	10	0	(c-)	X	+	9283383	9283386	CAC	null	X	-	15029281	15029278	93	5745898	0	0	na	no.cn.change	copy.number.visual.inspection	bkpt.assoc.cn.change	c	MEDIUM	yellow	NA
9801	X	9392389	9392778	X	10725053	10725387	+	+	1	9	0	(c-)	X	+	9392539	9392542	AGG	null	X	-	10725181	10725178	100	1332642	0	0	na	no.cn.change	copy.number.visual.inspection	bkpt.assoc.cn.change	c	MEDIUM	yellow	NA
9817	X	11426259	11426584	X	12647857	12648176	-	-	8	7	0	(c-)	X	-	11426495	11426491	CTGG	null	X	+	12648033	12648037	100	1221538	0	0	na	no.cn.change	copy.number.visual.inspection	bkpt.assoc.cn.change	c	MEDIUM	yellow	NA
9841	X	14820649	14821014	X	24393385	24393863	-	+	4	5	0	(c-)	X	-	14820896	14820894	CC	null	X	-	24393546	24393544	99	9572650	1	0	c	bkpt.assoc.cn.change	copy.number.visual.inspection	bkpt.assoc.cn.change	c	HIGH	yellow	LATE
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9857	X	18130260	18130529	X	24227609	24227907	-	-	8	9	0	(c-)	X	-	18130439	18130434	ACCTT	null	X	+	24227811	24227816	92	6097372	0	0	na	no.cn.change	copy.number.visual.inspection	bkpt.assoc.cn.change	c	MEDIUM	yellow	NA
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9912	X	25673561	25673872	X	25680743	25680976	-	-	8	7	0	(c-)	X	-	25673770	25673766	GTGA	null	X	+	25680879	25680883	100	7109	1	0	c	bkpt.assoc.cn.change	copy.number.visual.inspection	bkpt.assoc.cn.change	c	HIGH	yellow	LATE
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10089	X	66401940	66402186	X	66645244	66645490	-	+	4	96	19	(ch)	X	-	66402096	66402094	TG	null	X	-	66645331	66645329	100	243235	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
10099	X	67394765	67395018	X	67496507	67496774	-	+	4	42	6	(ch)	X	-	67394923	67394920	GAC	null	X	-	67496604	67496601	99	101681	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
10128	X	78289283	78289429	X	91172282	91172568	+	-	2	6	3	(ch)	X	+	78289375	78289377	AT	null	X	+	91172470	91172472	95	12883095	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
10149	X	91211843	91212142	X	91717086	91717363	-	+	4	9	2	(ch)	X	-	91212051	91212049	CA	null	X	-	91717198	91717196	99	505147	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
10150	X	91397326	91397683	X	92281617	92281929	-	+	4	12	6	(ch)	X	-	91397576	91397575	G	null	X	-	92281745	92281744	95	884169	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
10153	X	91581070	91581513	X	92217933	92218316	+	-	2	5	4	(ch)	X	+	91581313	91581314	C	null	X	+	92218216	92218217	99	636903	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
10163	X	97137429	97137670	X	100730750	100731032	+	-	2	21	8	(ch)	X	+	97137528	0	null	null	X	+	100730939	0	100	3593411	NA	NA	NA	NA	NA	NA	ch	HIGH	grey	EARLY
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