PD12334a	PD12334b	PD12334c	PD12334d	PD12334e	PD12334f	PD12334g	PD12334h	PD12334i	variant	include	regions	notes	exclude
0.667288369	0.145008026	1.10225157	0.675044501	0.548793622	0.421977324	0.697654798	0.491791025	1.259974052	Amp:8q24.21(MYC)	n	--c----i	in I and c sample logR is >=0.35 higher than arm level event	
2.408408067	0.027637206	2.396230426	2.390095439	2.419984274	2.483775584	2.454163314	2.417809644	1.641241998	Amp:11q13.3(CCND1)	y	acdefghi	no het snps	
-0.531607461	0.107312646	-0.476036029	-0.501416477	-0.507788875	-0.514884505	-0.438785463	-0.559234334	-0.412818493	Del:1p36.11(ARID1A)	n	acdefghi	no het snps	
-0.523020797	-0.070469528	-0.412973992	-0.471497122	-0.315735903	-0.432717028	-0.488153393	-0.576514118	-0.320481472	Del:5q11.2(MAP3K1)	n	acdefghi	no het snps	
-0.469252229	-0.13447238	-0.40757531	-0.383249576	-0.501291152	-0.314457168	-0.640120457	-0.364572821	-0.285747389	Del:13q14.2(RB1)	n	acdefghi	only 1 het snp	
-0.691152644	-0.738523274	-0.557037916	-0.691723522	-0.512989552	-0.661735435	-0.904704026	-0.693180926	-1.425120175	Del:17q21.31(BRCA1)	n		does not normalise in b	
-0.601361143	-0.987616103	-0.548116952	-0.622150006	-0.523816313	-0.573115994	-0.921277804	-0.642336298	-0.803675029	Del:13q12.3(BRCA2)	n		does not normalise in b	
0.431494691	0.098305025	0.363093065	0.384058639	0.32940527	0.408960278	0.408084409	0.362500921	0.494215433	Gain 1q	y	acdefghi		
0.437437582	0.087065654	0.751847228	0.505709776	0.380429663	0.438815707	0.503969054	0.425191851	0.408220808	Gain 8q	y	acdefghi		
-0.445014758	0.194078249	-0.443420774	-0.418563956	-0.456157592	-0.442253839	-0.37706414	-0.3656958	0.025549884	Loss 16q	y	acdefghi		
-0.606171418	0.054069308	-0.516800819	-0.52536517	-0.545688422	-0.528511686	-0.522973023	-0.535622142	-0.442547443	Loss 17p	y	acdefghi	"7 het snps, show deviation"	
-0.569994363	-0.27494393	-0.535754383	-0.504356334	-0.536492532	-0.585164912	-0.66121765	-0.632289416	-0.683233812	Loss 8p	y	acdefghi	does not normalise in b