PD14754a	PD14754b	PD14754c	variant	include	regions	notes	exclude
2.113202155	-0.23734939	1.820083832	Amp:8q24.21(MYC)	y	ac	"single het snp, baf deviation, amp above 8q"	
1.069006481	0.067090533	0.665641465	Amp:19q12(CCNE1)	y	ac	"single het snp, baf deviation"	
2.885061204	0.011465255	3.209590167	Amp:8p11.22(FGFR1)	y	ac	"2 het snps, baf deviation, gain above 8p arm level gain"	
-0.608177695	-0.107607836	-0.515217883	Del:1p36.11(ARID1A)	n		"no BAF deviation, doesn't normalise well"	
-1.098496587	0.059694609	-0.380095498	Del:17q21.31(BRCA1)	n	ac	"1 het snp, deviates"	
-1.037767945	0.041421188	-0.372759044	Del:13q12.3(BRCA2)	n	ac	"6 het snps, clear trend "	
0.245480965	-0.042326862	0.189253957	Gain 1q	y	ac		
1.614800136	0.007360242	1.517020626	Gain 8q	y	ac	baf support	
2.013445269	-0.050599849	2.177561163	Loss 8p	n			
-0.354927276	0.022968411	-0.466270634	Loss 16q	n		"although deviation in LogR is seen, no BAF deviation, indicating not LOH"	
-0.607178141	-0.05801444	-0.533592956	Loss 17p	y	ac	"12 het snps, clear deviation"