PD14763a	PD14763b	PD14763c	PD14763d	PD14763e	PD14763f	PD14763g	PD14763h	PD14763i	PD14763j	PD14763k	PD14763l	PD14763m	PD14763n	PD14763o	PD14763p	variant	include	regions	notes	exclude
1.652555507	-0.004989472	1.525004928	1.79861024	1.163547091	1.011019564	1.55862514	1.508525366	1.619497406	1.23499966	1.698055288	1.5856008	1.521810328	1.611393753	1.6257512	1.51506944	Amp:11q13.3(CCND1)	y	acdefghijklmnop	"single BAF snp, shows separation"	
1.67431339	0.070187127	1.729389844	1.357899122	1.495374942	1.307798681	1.392676653	1.241568878	1.3095266	1.179135913	1.422196934	1.257981997	1.397498104	1.243743291	1.357338039	1.352675924	Amp:8p11.22(FGFR1)	y	acdefghijklmnop	"2 BAF snps, shows separation, greater than arm level gain in all cases"	
0.30148272	-0.029802537	0.328103343	0.310194129	0.242263628	0.195906335	0.256540043	0.225684693	0.227308943	0.152493321	0.243412095	0.196811331	0.24376122	0.222348217	0.226563292	0.212480693	Gain 1q	y	acdefghijklmnop		
-0.603901074	0.029114309	-0.578709284	-0.65139583	-0.416278097	-0.268774989	-0.553058061	-0.541630483	-0.529028496	-0.406393817	-0.57737983	-0.595020768	-0.566495589	-0.530695634	-0.524242941	-0.503191839	Loss 16q	y	acdefghijklmnop		
-0.767121678	-0.105180969	-0.674409114	-0.549676567	-0.575743417	-0.468470782	-0.552758253	-0.295118035	-0.386534136	-0.358558929	-0.484680296	-0.342409352	-0.531610487	-0.33224123	-0.34621548	-0.518876869	Del:1p36.11(ARID1A)	n	acdefghijklmnop		
-0.766173148	0.092461114	-0.550672935	-0.716979609	-0.426533998	-0.270636697	-0.558837829	-0.440661103	-0.545980946	-0.385285455	-0.472684734	-0.44855646	-0.499676559	-0.469130587	-0.48566377	-0.583219058	Del:17q21.31(BRCA1)	n	acdefghijklmnop		
0.270610136	-0.0027239	0.218143115	0.209497213	0.166364791	0.135739094	0.189054802	0.135386204	0.173392359	0.115884975	0.180670482	0.136513768	0.144030142	0.159818844	0.131878017	0.16297288	Gain 8q	n			
1.081609779	-0.021099956	1.081579936	0.961326296	0.912191519	0.825823153	0.904366904	0.743053299	0.810638614	0.752890059	0.918962011	0.761553785	0.912578961	0.790815844	0.805102771	0.883576568	Loss 8p	n			
0.29499801	-0.029076672	0.255031063	0.241404206	0.304151051	0.281684783	0.29669748	0.25688208	0.281492352	0.321251002	0.266109216	0.242416519	0.277278484	0.217255787	0.282585162	0.320489455	Loss 17p	n