PD9694b	PD9694e	PD9694f	PD9694g	PD9694h	PD9694i	PD9694j	PD9694k	PD9694l	PD9694m	PD9694n	PD9694o	PD9694p	PD9694q	PD9694r	PD9694s	PD9694t	PD9694u	variant	include	regions	comment	exclude
0.029475086	1.779989893	1.733383675	1.880142245	1.228805691	1.071597861	1.909611165	1.874503242	1.225442524	0.850302394	1.579772844	1.415560351	1.344257519	1.361152769	1.198432222	2.077903549	1.413129615	1.764579734	Amp:8p11.22(FGFR1)	y	efghijklmnopqrstu	"baf support, not visible on ASCAT- probable samll amp"	
-0.882635027	-0.09022805	-0.063436024	-0.072235367	-0.02838433	-0.06666062	0.050012374	-0.87586708	-0.171907185	-0.210648515	-0.08494177	-0.149669242	-0.183126745	-0.181131055	-0.014753649	-0.042217574	-0.033730764	-0.110141617	Del:13q14.2(RB1)	n		"does not normalise to zero in normal, no BAF het snps"	
-0.010441723	0.220972786	0.297941966	0.13596528	0.042663583	0.080617026	0.261008083	0.248430564	0.031330454	0.020917665	0.021698491	0.026901374	-0.003312143	0.026404351	-0.022577128	0.057945816	0.221685842	0.36610745	Gain 1q	y	efg--jk--------tu		
0.053148437	0.330668041	0.345369214	0.316962991	0.224897747	0.189794234	0.428042709	0.464658362	0.372293406	0.128011496	0.32112828	0.30781742	0.329762417	0.290058663	0.186192625	0.415328055	0.26634985	0.38461032	Gain 8q	y	efghijklmnopqrstu	"no BAF change, a sample ASCAT NGS/SNP6 confirms balanced gain(2+2)"	
0.069531952	0.930359484	0.985236728	1.030292842	0.617392755	0.503448732	1.099403859	1.199532717	0.625647226	0.427953873	0.824323913	0.691139569	0.672364796	0.7233912	0.558299659	1.140699963	0.710861993	0.992515759	Loss 8p	n			
-0.023115726	-0.464553456	-0.226283959	-0.431700514	-0.390755336	-0.375994404	-0.305850632	-0.384569453	-0.416150304	-0.183365337	-0.523629214	-0.553064109	-0.556275982	-0.44993266	-0.493557311	-0.49893709	-0.40825762	-0.385996829	Loss 16q	y	efghijklmnopqrstu	"BAF support and WGS, ASCAT NGS/SNP6"	
-0.117196415	-0.566099656	-0.405568966	-0.481227927	-0.459587851	-0.431982105	-0.497312898	-0.614867143	-0.594867577	-0.229991303	-0.582616361	-0.589450304	-0.653125064	-0.539645682	-0.51616059	-0.548068382	-0.462079688	-0.496676774	Loss 17p	y	efghijklmnopqrstu	"BAF support and WGS, ASCAT NGS/SNP7"