PD9771a2	PD9771b	PD9771d	PD9771e	PD9771f	PD9771g	PD9771h	variant	include	regions	comment	exclude
1.443948018	-0.042947046	0.484336667	1.344712701	1.594815368	1.955184984	0.687297314	Amp:15q26.3(IGF1R)	y	a2defg	"consistent baf, seen in BFB in WGS data(lower ACF of d hence lower apparent level of gain)"	h
-0.077956605	-0.398562155	0.032558641	0.127251561	0.866954083	0.921035092	0.250430491	Amp:20q13.2(ZNF217)	n		fails to normalise	h
2.649768749	-0.597674517	1.471948565	2.552596333	2.975539077	3.248016092	1.728874186	Amp:12q14.1(CDK4)	y	a2defg		h
0.568574296	-0.066222588	0.578617885	0.779823612	0.660976207	1.096472573	0.451864207	Amp:8p11.22(FGFR1)	y	a2defg	no het snps for baf but confirmed by PICNIC SNP6 for whole genome	h
-0.725410953	-0.096533123	-0.324131272	-0.615257563	-0.363212522	-0.648079094	-0.116141374	Del:5q11.2(MAP3K1)	n		no consistent change in baf	h
-0.299637145	-0.258774863	-0.191668666	-0.481833863	-0.203288675	-0.640904471	-0.117392932	Del:13q14.2(RB1)	n		does not normalise to zero	h
0.313829516	-0.062203532	-0.029151964	0.146808367	0.117212559	0.203438103	0.014908674	Gain 1q	y	a2-efg	consistent with WGS NGS- not in d sample	h
0.522881491	0.016972461	0.137198242	-0.006042777	-0.00899332	-0.041246969	-0.09263448	Gain 8q	y	a2d---	"consistent with NGS ASCAT, WGS, LOH and amp in a, large gain not seen in e"	h
0.269454341	0.017029971	0.330839412	0.402441677	0.311991645	0.486627425	0.212640819	Loss 8p	n			h
0.065908999	0.009230006	0.009628395	-0.011439688	0.044029107	0.073435856	-0.040354279	Loss 16q	n			h
-0.219748546	-0.034159722	-0.1141727	-0.303403999	-0.231482148	-0.453133509	0.05713685	Loss 17p	y	a2defg		h