PD9772a3	PD9772b	PD9772c	PD9772d	variant	include	regions	notes	exclude
0.659583968	-0.353949829	1.200286238	0.971493784	Amp:8q24.21(MYC)	y	-cd	consistent baf- gain above 8q gain is only seen in c and d samples	
-0.583264574	-0.161009025	-0.29339759	-0.188190865	Del:1p36.11(ARID1A)	n	acd	consistent baf	
-0.60974348	-0.276344656	-0.176598057	-0.129834838	Del:5q11.2(MAP3K1)	n		faills to normalise.	
-0.544134245	0.029947324	-0.227349718	-0.029907236	Del:13q14.2(RB1)	n	ac-	whole of 13q LOH on  ASCAT SNP6- no focal del	
-0.384776236	-0.166347715	-0.58867724	-0.697549768	Del:17q21.31(BRCA1)	n	acd	whole of 17q LOH on  ASCAT SNP6- no focal del	
0.317649197	-0.029899728	0.261350555	0.256917755	Gain 1q	y	acd	"complex cn change, but prob overall gain"	
0.793202812	0.02455338	0.757483899	0.577840074	Gain 8q	y	acd	consistent baf	
-0.550952794	-0.05667108	-0.482283362	-0.439226954	Loss 8p	y	acd	"consistent with wgs, ASCAT SNP8"	
0.174665287	0.109717409	-0.109269947	-0.054862628	Loss 16q	n			
0.138546827	-0.005936565	0.154266826	0.13404027	Loss 17p	n		"partial loss, partial gain, don't report as not whole arm"