PD9776a	PD9776b	PD9776c2	PD9776d	PD9776e	variant	include	regions	comments	exclude
0.25487344	-0.293642393	0.239306901	0.578139095	0.849800523	Amp:8q24.21(MYC)	y	ac2de	consistent with NGS	
-0.515075578	-0.150468214	-0.324306329	-0.088411763	-0.354119691	Del:5q11.2(MAP3K1)	n		"noise in BAF data, failure to normalise"	
-0.42480198	-0.0007103	-0.688034669	-0.339273978	-0.372713674	Del:13q14.2(RB1)	n	ac2de	no het snpsbut consistent with WGS ASCAT- arm level LOH	
0.082114803	-0.030127799	0.065847848	0.214241411	0.099481883	Gain 1q	n			
0.52213099	0.016336626	0.492090892	0.367159988	0.543853092	Gain 8q	y	ac2de	"noise in BAF, but consistent with WGS ASCAT"	
-0.4292255	-0.041779492	-0.324079152	-0.419834149	-0.647582871	Loss 8p	y	ac2de	"noise in BAF, but consistent with WGS ASCAT"	
-0.386824142	0.051625589	-0.280597956	-0.339665545	-0.46360276	Loss 16q	y	ac2de		
-0.490503328	-0.003526293	-0.305613484	-0.399541623	-0.648211238	Loss 17p	y	ac2de	"noise in BAF, but consistent with WGS ASCAT"