PD9777a2	PD9777b	PD9777c2	PD9777e	PD9777f	variant	include	regions	notes	exclude
0.703082321	-0.337973864	0.350119065	0.721122521	1.040970438	Amp:8q24.21(MYC)	y	--ef	whole genom edata supports this	
-0.711688846	-0.162911005	-0.496098462	-0.473120448	-0.47522625	Del:5q11.2(MAP3K1)	n	a2c2ef	single het snp	
-0.782213359	-0.007561736	-0.422316333	-0.374190809	-0.476604909	Del:7q36.1(MLL3)	n		"single het snp, no deviation from 0.5"	
-0.534549122	-0.069331212	-0.537113877	-0.254476394	-0.120137246	Del:13q14.2(RB1)	n		no het snps	
-0.536125744	-0.108588654	-0.262875637	-0.067397126	-0.590003055	Del:19p13.3(STK11)	n	a2c2ef	"single het snp, but consistent"	
-0.535278418	-0.054128092	-0.421686891	-0.175922133	-0.136590286	Del:13q12.3(BRCA2)	n	a2c2ef		
0.407047215	-0.042250958	0.290819457	0.24300577	0.417106736	Gain 1q	y	a2c2ef		
0.857500808	0.025552039	0.591357947	0.403629294	0.513569483	Gain 8q	y	a2c2ef		
-0.66109441	-0.01100543	-0.413374963	-0.320563845	-0.532701373	Loss 8p	y	a2c2ef	consistent with bafs	
0.231623973	0.029777166	0.231469962	0.123443532	0.227688736	Loss 16q	n			
-0.712063233	-0.022139377	-0.462940517	-0.401571594	-0.374916108	Loss 17p	y	a2c2ef	"noise in baf, but consistent with WGS ASCAT"