PD9852a	PD9852b	PD9852c	PD9852d	PD9852e	PD9852g	PD9852h	PD9852i	variant	include	regions	notes	exclude
0.529483152	-0.020076369	0.847103802	0.35357775	0.50944726	0.226689319	0.327104579	0.445240472	Amp:7p11.2(EGFR)	n	acdefghi	<1.2	
0.625097484	-0.239562116	0.926555027	0.625035585	0.765223613	0.576468909	0.458497285	0.773371296	Amp:17q12(ERBB2)	n	acdefghi	<1.2	
0.154208368	-0.045417637	0.352414566	0.45323669	0.270948149	0.445888373	0.187571173	0.388463187	Amp:20q13.2(AURKA)	n		does not hit th in native DNA	
-0.028103461	-0.288575426	0.044133326	0.134641991	-0.008447982	-0.053955446	0.016815705	0.142105067	Amp:12q14.1(CDK4)	n		does not hit th in native DNA	
0.142073641	-0.073298441	0.34588962	-0.088882197	0.159966873	-0.037145219	0.070137195	0.187767924	Amp:6p21.1(CCND3)	n		does not hit th in native DNA	
-0.248074774	-0.127172976	-0.295531025	-0.246969489	-0.199880084	-0.142340253	-0.327077252	-0.224483232	Del:17q21.31(BRCA1)	n		does not hit th in native DNA	
-0.313014224	-0.116279141	-0.403090576	-0.211567447	-0.260207169	-0.163565518	-0.543860915	-0.212501017	Del:13q12.3(BRCA2)	n		"does not normalise in normal, no het snps"	
0.109920888	-0.098562103	0.211138305	0.116791403	0.150175867	0.087652263	0.101334744	0.163027768	Gain 1q	n			
-0.006636525	0.063650586	-0.006099967	0.009105474	-0.029777945	-0.068407861	0.037566665	-0.029185284	Gain 8q	n			
0.182338961	-0.003321273	0.281210397	0.181000657	0.205809826	0.137201769	0.234005635	0.267134761	Loss 16q	n			
-0.24141468	0.081281219	-0.360566191	-0.215820333	-0.354332825	-0.204900579	-0.15071924	-0.23646135	Loss 17p	y	acdefghi	17p LOH supported by WGA in c sample	
-0.40955189	-0.011472092	-0.775674187	-0.429236404	-0.549600744	-0.381779805	-0.422827488	-0.496275827	Loss 8p	y	acdefghi	"noise in BAF, but support from WGS ASCAT  NGS"