PD9854a	PD9854b	PD9854c	PD9854d	PD9854e	PD9854f	PD9854g	PD9854h	PD9854i	variant	include	region	notes
0.579433256	-0.180028216	0.757937259	0.784384238	0.772228067	1.115223294	1.014689069	1.004486583	0.949112581	Amp:8q24.21(MYC)	n	acdefghi	"no het snps, not much higher than arm level gain therefore do not call as MYC amp"
0.665923745	-0.085860482	1.072784499	1.282754301	1.003085385	1.131279156	1.246696587	1.111434124	1.184234545	Amp:11q13.3(CCND1)	y	acdefghi	no het snps
0.368239368	0.107460503	0.431419837	0.470640107	0.429696597	0.721798732	0.833972918	0.608396598	0.621049765	Amp:20q13.2(ZNF217)	n	acdefghi	"1 het snp, deviation in all regions, probable gain rather than amp"
0.546096816	0.009843551	0.588318545	0.8168321	0.611664513	0.929651896	0.794664688	0.797289633	0.841479167	Amp:8p11.22(FGFR1)	n	acdefghi	low level probabale arm level event
0.088484436	-0.11495225	0.249519747	0.35815916	0.288813838	0.186358101	0.222267327	0.206474462	0.219374883	Amp:12q14.1(CDK4)	n		does not hit Th in native DNA
-0.009065463	-0.116025694	-0.249351768	-0.214014684	-0.388123193	-0.321325374	-0.417011332	-0.449367166	-0.621877126	Del:13q14.2(RB1)	n		"does not normalise, no consistent pattern"
0.225404149	-0.01832661	0.305444223	0.134635614	0.333180442	0.361878973	0.395191194	0.429389454	0.322788849	Del:19p13.3(STK11)	n		does not show aberration in native DNA
-0.145979626	-0.302355473	-0.450081668	-0.298287894	-0.441744785	-0.519536884	-1.024109186	-0.859596498	-0.687228284	Del:13q12.3(BRCA2)	n		"does not normalise, no het SNPs"
0.247812793	0.023345442	0.138366234	0.035990155	0.338577415	0.244798385	0.346647969	0.236680376	0.273138356	Gain 1q	y	acdefghi	
0.475547709	0.028846994	0.605761207	0.69253072	0.603877684	0.825829616	0.806368119	0.777724893	0.780740707	Gain 8q	y	acdefghi	
-0.063994671	0.017597594	-0.112432891	-0.137852242	-0.126603318	-0.224143095	-0.151596223	-0.178678861	-0.270547063	Loss 16q	y	acdefghi	clear BAF deviation in all samples
-0.082091063	0.02586316	-0.229817972	-0.204876052	-0.22263076	-0.55193646	-0.546822688	-0.509704122	-0.61072334	Loss 17p	y	cdefghi	"BAF clearly shows devoation in all samples other than a, where it is same as normal"
0.158809153	-0.079823312	0.128127101	0.260157205	0.122359944	0.317321847	0.125403547	0.235216526	0.281527604	Loss 8p	n