Normal	Chrom	Pos	Ref	Alt	Gene	Transcript	RNA	CDS	Protein	Type	Effect	CancerGene	Description	DRIVER_CATEGORY	Age	pCR_vs_RD	PreTxTumorSizeClinOrRad	Tumor_size_surgery(cm)	Grade	group	Ki67_biopsy	NumPosLn	ANTHRACYCLINE	TAXANE	geneRef	Mutant_read_count_PD13595a	WT_read_count_PD13595a	DEPTH_PD13595a	MutantPctPD13595a	Mutant_read_count_PD13595c	WT_read_count_PD13595c	DEPTH_PD13595c	MutantPctPD13595c	Mutant_read_count_PD13595d	WT_read_count_PD13595d	DEPTH_PD13595d	MutantPctPD13595d	Mutant_read_count_PD13595e	WT_read_count_PD13595e	DEPTH_PD13595e	MutantPctPD13595e	Mutant_read_count_PD13595f	WT_read_count_PD13595f	DEPTH_PD13595f	MutantPctPD13595f	Mutant_read_count_PD13595g	WT_read_count_PD13595g	DEPTH_PD13595g	MutantPctPD13595g	Mutant_read_count_PD13595h	WT_read_count_PD13595h	DEPTH_PD13595h	MutantPctPD13595h	Mutant_read_count_PD13595i	WT_read_count_PD13595i	DEPTH_PD13595i	MutantPctPD13595i
PD13595b	9	5078326	TGGG	TA	JAK2	CCDS6457.1	r.2508_2510delGGGinsa	c.2014_2016delGGGinsA	p.G672fs*26	Complex	frameshift	3	UNCERTAIN_CANCER_GENE_STATUS_IN_BCA	UNKNOWN	90	pS	3	3	3	3	47	11	YES	YES	JAK2:p.G672fs*26	19	31	50	38	40	15	55	72.72727273	41	56	97	42.26804124	11	11	22	50	1	8	9	11.11111111	15	56	71	21.12676056	31	33	64	48.4375	52	54	106	49.05660377
PD13595b	21	36259173	CCAGTGCGTAGG	C	RUNX1	CCDS13639.1	r.752_762delCCUACGCACUG	c.307_317delCCTACGCACTG	p.P103fs*31	Del	frameshift	1	DAMAGING_BCA_GENE	ONCOGENIC	90	pS	3	3	3	3	47	11	YES	YES	RUNX1:p.P103fs*31	60	132	192	31.25	179	74	253	70.75098814	57	67	124	45.96774194	135	101	236	57.20338983	141	100	241	58.50622407	67	170	237	28.27004219	71	72	143	49.65034965	80	79	159	50.31446541