Normal	Chrom	Pos	Ref	Alt	Gene	Transcript	RNA	CDS	Protein	Type	Effect	CancerGene	Description	DRIVER_CATEGORY	Age	pCR_vs_RD	PreTxTumorSizeClinOrRad	Tumor_size_surgery(cm)	Grade	group	Ki67_biopsy	NumPosLn	ANTHRACYCLINE	TAXANE	geneRef	Mutant_read_count_PD14753a	WT_read_count_PD14753a	DEPTH_PD14753a	MutantPctPD14753a	Mutant_read_count_PD14753c	WT_read_count_PD14753c	DEPTH_PD14753c	MutantPctPD14753c	Mutant_read_count_PD14753d	WT_read_count_PD14753d	DEPTH_PD14753d	MutantPctPD14753d	Mutant_read_count_PD14753e	WT_read_count_PD14753e	DEPTH_PD14753e	MutantPctPD14753e	Mutant_read_count_PD14753f	WT_read_count_PD14753f	DEPTH_PD14753f	MutantPctPD14753f
PD14753b	8	38205011	TTACATTTTGTTCCTCTGGTTCTAATTTGGGGA	T	WHSC1L1	CCDS43729.1	r.1165_1193+3del32	c.647_675+3del32	p.?	Del	ess splice	3	UNCERTAIN_CANCER_GENE_STATUS_IN_BCA	UNKNOWN	46	RD	2.3	0.6	3	3	70	0	YES	YES	WHSC1L1:p.?	0	46	46	0	0	73	73	0	0	99	99	0	0	118	118	0	7	97	104	6.73076923076923
PD14753b	9	21974788	AGCCGAAG	A	CDKN2A	CCDS6510.1	r.303_309delCUUCGGC	c.32_38delCTTCGGC	p.P11fs*13	Del	frameshift	1	DAMAGING_IN_BCA_GENE	ONCOGENIC	46	RD	2.3	0.6	3	3	70	0	YES	YES	CDKN2A:p.P11fs*13	0	122	122	0	0	75	75	0	0	139	139	0	0	136	136	0	57	81	138	41.304347826087