Normal Chrom Pos Ref Alt Gene Transcript RNA CDS Protein Type Effect CancerGene Description DRIVER_CATEGORY Age pCR_vs_RD PreTxTumorSizeClinOrRad Tumor_size_surgery(cm) Grade group Ki67_biopsy NumPosLn ANTHRACYCLINE TAXANE geneRef Mutant_read_count_PD14755a WT_read_count_PD14755a DEPTH_PD14755a MutantPctPD14755a Mutant_read_count_PD14755c WT_read_count_PD14755c DEPTH_PD14755c MutantPctPD14755c Mutant_read_count_PD14755d WT_read_count_PD14755d DEPTH_PD14755d MutantPctPD14755d Mutant_read_count_PD14755e WT_read_count_PD14755e DEPTH_PD14755e MutantPctPD14755e Mutant_read_count_PD14755f WT_read_count_PD14755f DEPTH_PD14755f MutantPctPD14755f Mutant_read_count_PD14755g WT_read_count_PD14755g DEPTH_PD14755g MutantPctPD14755g Mutant_read_count_PD14755h WT_read_count_PD14755h DEPTH_PD14755h MutantPctPD14755h Mutant_read_count_PD14755i WT_read_count_PD14755i DEPTH_PD14755i MutantPctPD14755i Mutant_read_count_PD14755j WT_read_count_PD14755j DEPTH_PD14755j MutantPctPD14755j PD14755b 5 56161184 TG T MAP3K1 CCDS43318.1 r.1054delG c.1054delG p.G352fs*10 Del frameshift 1 DAMAGING_IN_BCA_GENE ONCOGENIC 63 RD 3.2 2.2 3 3 25 1 YES YES MAP3K1:p.G352fs*10 25 47 72 34.7222222222222 28 40 68 41.1764705882353 28 36 64 43.75 42 97 139 30.2158273381295 3 32 35 8.57142857142857 16 31 47 34.0425531914894 14 64 78 17.9487179487179 1 23 24 4.16666666666667 2 51 53 3.77358490566038 PD14755b 5 56177456 CA C MAP3K1 CCDS43318.1 r.2430delA c.2430delA p.M811fs*11 Del frameshift 1 DAMAGING_IN_BCA_GENE ONCOGENIC 63 RD 3.2 2.2 3 3 25 1 YES YES MAP3K1:p.M811fs*11 18 71 89 20.2247191011236 12 69 81 14.8148148148148 28 117 145 19.3103448275862 35 119 154 22.7272727272727 8 68 76 10.5263157894737 17 59 76 22.3684210526316 14 113 127 11.0236220472441 1 32 33 3.03030303030303 3 87 90 3.33333333333333 PD14755b 17 7577593 TAC T TP53 CCDS11118.1 r.876_877delGU c.686_687delGT p.C229fs*10 Del frameshift 1 DAMAGING_IN_BCA_GENE ONCOGENIC 63 RD 3.2 2.2 3 3 25 1 YES YES TP53:p.C229fs*10 44 46 90 48.8888888888889 48 33 81 59.2592592592593 214 139 353 60.6232294617564 67 52 119 56.3025210084034 27 101 128 21.09375 36 50 86 41.8604651162791 18 77 95 18.9473684210526 21 148 169 12.4260355029586 8 63 71 11.2676056338028 PD14755b 6 91296567 CGAG C MAP3K7 CCDS5028.1 r.195_197delCUC c.33_35delCTC p.S14delS Del inframe 3 UNCERTAIN_CANCER_GENE_STATUS_IN_BCA UNKNOWN 63 RD 3.2 2.2 3 3 25 1 YES YES MAP3K7:p.S14delS 2 33 35 5.71428571428571 0 45 45 0 7 274 281 2.49110320284698 1 105 106 0.943396226415094 1 52 53 1.88679245283019 0 31 31 0 2 135 137 1.45985401459854 7 127 134 5.22388059701492 9 112 121 7.43801652892562