Normal	Chrom	Pos	Ref	Alt	Gene	Transcript	RNA	CDS	Protein	Type	Effect	CancerGene	Description	DRIVER_CATEGORY	Age	pCR_vs_RD	PreTxTumorSizeClinOrRad	Tumor_size_surgery(cm)	Grade	group	Ki67_biopsy	NumPosLn	ANTHRACYCLINE	TAXANE	geneRef	Mutant_read_count_PD14757a	WT_read_count_PD14757a	DEPTH_PD14757a	MutantPctPD14757a	Mutant_read_count_PD14757c	WT_read_count_PD14757c	DEPTH_PD14757c	MutantPctPD14757c	Mutant_read_count_PD14757d	WT_read_count_PD14757d	DEPTH_PD14757d	MutantPctPD14757d	Mutant_read_count_PD14757e	WT_read_count_PD14757e	DEPTH_PD14757e	MutantPctPD14757e	Mutant_read_count_PD14757f	WT_read_count_PD14757f	DEPTH_PD14757f	MutantPctPD14757f	Mutant_read_count_PD14757g	WT_read_count_PD14757g	DEPTH_PD14757g	MutantPctPD14757g	Mutant_read_count_PD14757h	WT_read_count_PD14757h	DEPTH_PD14757h	MutantPctPD14757h	Mutant_read_count_PD14757i	WT_read_count_PD14757i	DEPTH_PD14757i	MutantPctPD14757i
PD14757b	16	68862119	TG	T	CDH1	CCDS10869.1	r.2399delG	c.2208delG	p.V737fs*33	Del	frameshift	1	DAMAGING_IN_BCA_GENE	ONCOGENIC	48	RD	4	5.4	1	3	5	1	YES	YES	CDH1:p.V737fs*33	14	34	48	29.16666667	13	34	47	27.65957447	26	93	119	21.8487395	10	64	74	13.51351351	11	91	102	10.78431373	6	60	66	9.090909091	3	31	34	8.823529412	8	43	51	15.68627451
PD14757b	3	178927976	ACACTGT	A	PIK3CA	CCDS43171.1	r.1412_1417delCACUGU	c.1255_1260delCACTGT	p.H419_C420delHC	Del	inframe	1	ONCOGENIC	ONCOGENIC	48	RD	4	5.4	1	3	5	1	YES	YES	PIK3CA:p.H419_C420delHC	3	56	59	5.084745763	5	55	60	8.333333333	21	147	168	12.5	8	90	98	8.163265306	10	109	119	8.403361345	6	60	66	9.090909091	1	38	39	2.564102564	4	53	57	7.01754386