Normal	Chrom	Pos	Ref	Alt	Gene	Transcript	RNA	CDS	Protein	Type	Effect	CancerGene	Description	DRIVER_CATEGORY	Age	pCR_vs_RD	PreTxTumorSizeClinOrRad	Tumor_size_surgery(cm)	Grade	group	Ki67_biopsy	NumPosLn	ANTHRACYCLINE	TAXANE	geneRef	Mutant_read_count_PD14758a	WT_read_count_PD14758a	DEPTH_PD14758a	MutantPctPD14758a	Mutant_read_count_PD14758c	WT_read_count_PD14758c	DEPTH_PD14758c	MutantPctPD14758c	Mutant_read_count_PD14758d	WT_read_count_PD14758d	DEPTH_PD14758d	MutantPctPD14758d	Mutant_read_count_PD14758e	WT_read_count_PD14758e	DEPTH_PD14758e	MutantPctPD14758e	Mutant_read_count_PD14758f	WT_read_count_PD14758f	DEPTH_PD14758f	MutantPctPD14758f	Mutant_read_count_PD14758g	WT_read_count_PD14758g	DEPTH_PD14758g	MutantPctPD14758g	Mutant_read_count_PD14758h	WT_read_count_PD14758h	DEPTH_PD14758h	MutantPctPD14758h	Mutant_read_count_PD14758i	WT_read_count_PD14758i	DEPTH_PD14758i	MutantPctPD14758i	Mutant_read_count_PD14758j	WT_read_count_PD14758j	DEPTH_PD14758j	MutantPctPD14758j
PD14758b	10	8115959	C	CCC	GATA3	CCDS31143.1	r.1876_1877inscc	c.1308_1309insCC	p.S437fs*40	Ins	frameshift	1	DAMAGING_IN_BCA_GENE	ONCOGENIC	34	RD	5.5	6	2	3	30	12	YES	YES	GATA3:p.S437fs*40	32	111	143	22.37762238	22	43	65	33.84615385	13	86	99	13.13131313	28	173	201	13.93034826	24	142	166	14.45783133	34	196	230	14.7826087	22	93	115	19.13043478	23	129	152	15.13157895	18	110	128	14.0625
PD14758b	16	68849475	G	GT	CDH1	CCDS10869.1	r.1569_1570insu	c.1378_1379insT	p.P461fs*3	Ins	frameshift	1	DAMAGING_IN_BCA_GENE	ONCOGENIC	34	RD	5.5	6	2	3	30	12	YES	YES	CDH1:p.P461fs*3	22	27	49	44.89795918	32	26	58	55.17241379	25	58	83	30.12048193	7	59	66	10.60606061	17	67	84	20.23809524	23	88	111	20.72072072	23	91	114	20.1754386	29	100	129	22.48062016	26	95	121	21.48760331