Normal	Chrom	Pos	Ref	Alt	Gene	Transcript	RNA	CDS	Protein	Type	Effect	CancerGene	Description	DRIVER_CATEGORY	Age	pCR_vs_RD	PreTxTumorSizeClinOrRad	Tumor_size_surgery(cm)	Grade	group	Ki67_biopsy	NumPosLn	ANTHRACYCLINE	TAXANE	geneRef	Mutant_read_count_PD14763a	WT_read_count_PD14763a	DEPTH_PD14763a	MutantPctPD14763a	Mutant_read_count_PD14763c	WT_read_count_PD14763c	DEPTH_PD14763c	MutantPctPD14763c	Mutant_read_count_PD14763d	WT_read_count_PD14763d	DEPTH_PD14763d	MutantPctPD14763d	Mutant_read_count_PD14763e	WT_read_count_PD14763e	DEPTH_PD14763e	MutantPctPD14763e	Mutant_read_count_PD14763f	WT_read_count_PD14763f	DEPTH_PD14763f	MutantPctPD14763f	Mutant_read_count_PD14763g	WT_read_count_PD14763g	DEPTH_PD14763g	MutantPctPD14763g	Mutant_read_count_PD14763h	WT_read_count_PD14763h	DEPTH_PD14763h	MutantPctPD14763h	Mutant_read_count_PD14763i	WT_read_count_PD14763i	DEPTH_PD14763i	MutantPctPD14763i	Mutant_read_count_PD14763j	WT_read_count_PD14763j	DEPTH_PD14763j	MutantPctPD14763j	Mutant_read_count_PD14763k	WT_read_count_PD14763k	DEPTH_PD14763k	MutantPctPD14763k	Mutant_read_count_PD14763l	WT_read_count_PD14763l	DEPTH_PD14763l	MutantPctPD14763l	Mutant_read_count_PD14763m	WT_read_count_PD14763m	DEPTH_PD14763m	MutantPctPD14763m	Mutant_read_count_PD14763n	WT_read_count_PD14763n	DEPTH_PD14763n	MutantPctPD14763n	Mutant_read_count_PD14763o	WT_read_count_PD14763o	DEPTH_PD14763o	MutantPctPD14763o	Mutant_read_count_PD14763p	WT_read_count_PD14763p	DEPTH_PD14763p	MutantPctPD14763p
PD14763b	1	27100315	TTC	T	ARID1A	CCDS285.1	r.4399_4400delUC	c.4028_4029delTC	p.S1344fs*100	Del	frameshift	1	DAMAGING_IN_BCA_GENE	ONCOGENIC	32	RD	4	2.4	3	3	50	1	YES	YES	ARID1A:p.S1344fs*100	80	43	123	65.0406504065041	29	29	58	50	101	94	195	51.7948717948718	15	21	36	41.6666666666667	30	57	87	34.4827586206897	35	58	93	37.6344086021505	53	100	153	34.640522875817	54	110	164	32.9268292682927	8	32	40	20	19	16	35	54.2857142857143	18	24	42	42.8571428571429	13	35	48	27.0833333333333	61	87	148	41.2162162162162	36	47	83	43.3734939759036	14	47	61	22.9508196721311