Normal	Chrom	Pos	Ref	Alt	Gene	Transcript	RNA	CDS	Protein	Type	Effect	CancerGene	Description	DRIVER_CATEGORY	Age	pCR_vs_RD	PreTxTumorSizeClinOrRad	Tumor_size_surgery(cm)	Grade	group	Ki67_biopsy	NumPosLn	ANTHRACYCLINE	TAXANE	geneRef	Mutant_read_count_PD9849a	WT_read_count_PD9849a	DEPTH_PD9849a	MutantPctPD9849a	Mutant_read_count_PD9849c	WT_read_count_PD9849c	DEPTH_PD9849c	MutantPctPD9849c	Mutant_read_count_PD9849d	WT_read_count_PD9849d	DEPTH_PD9849d	MutantPctPD9849d	Mutant_read_count_PD9849e	WT_read_count_PD9849e	DEPTH_PD9849e	MutantPctPD9849e	Mutant_read_count_PD9849f	WT_read_count_PD9849f	DEPTH_PD9849f	MutantPctPD9849f	Mutant_read_count_PD9849g	WT_read_count_PD9849g	DEPTH_PD9849g	MutantPctPD9849g	Mutant_read_count_PD9849h	WT_read_count_PD9849h	DEPTH_PD9849h	MutantPctPD9849h	Mutant_read_count_PD9849i	WT_read_count_PD9849i	DEPTH_PD9849i	MutantPctPD9849i
PD9849b	10	89720798	GTACT	G	PTEN	ENST00000371953	r.2307_2310delUACU	c.950_953delTACT	p.T319fs*1	Del	frameshift	1	DAMAGING_IN_BCA_GENE	ONCOGENIC	58	pS	3	3	2	3	20	3	YES	YES	PTEN:p.T319fs*1	26	79	105	24.7619047619048	53	110	163	32.5153374233129	0	4	4	0	33	37	70	47.1428571428571	22	68	90	24.4444444444444	39	52	91	42.8571428571429	22	48	70	31.4285714285714	5	10	15	33.3333333333333