Normal	Chrom	Pos	Ref	Alt	Gene	Transcript	RNA	CDS	Protein	Type	Effect	CancerGene	Description	DRIVER_CATEGORY	Age	pCR_vs_RD	PreTxTumorSizeClinOrRad	Tumor_size_surgery(cm)	Grade	group	Ki67_biopsy	NumPosLn	ANTHRACYCLINE	TAXANE	geneRef	Mutant_read_count_PD9854a	WT_read_count_PD9854a	DEPTH_PD9854a	MutantPctPD9854a	Mutant_read_count_PD9854c	WT_read_count_PD9854c	DEPTH_PD9854c	MutantPctPD9854c	Mutant_read_count_PD9854d	WT_read_count_PD9854d	DEPTH_PD9854d	MutantPctPD9854d	Mutant_read_count_PD9854e	WT_read_count_PD9854e	DEPTH_PD9854e	MutantPctPD9854e	Mutant_read_count_PD9854f	WT_read_count_PD9854f	DEPTH_PD9854f	MutantPctPD9854f	Mutant_read_count_PD9854g	WT_read_count_PD9854g	DEPTH_PD9854g	MutantPctPD9854g	Mutant_read_count_PD9854h	WT_read_count_PD9854h	DEPTH_PD9854h	MutantPctPD9854h	Mutant_read_count_PD9854i	WT_read_count_PD9854i	DEPTH_PD9854i	MutantPctPD9854i
PD9854b	11	69457819	CGAG	C	CCND1	CCDS8191.1	r.429_431delGAG	c.220_222delGAG	p.E76delE	Del	inframe	1	POSSIBLE_ONCOGENIC_BCA_GENE	POSSIBLE_ONCOGENIC	69	pS	1.3	1.3	2	3	32	1	YES	YES	CCND1:p.E76delE	11	93	104	10.5769230769231	9	112	121	7.43801652892562	13	99	112	11.6071428571429	22	140	162	13.5802469135802	11	128	139	7.9136690647482	18	154	172	10.4651162790698	9	119	128	7.03125	7	86	93	7.52688172043011