Normal	Chrom	Pos	Ref	Alt	Gene	Transcript	RNA	CDS	Protein	Type	Effect	CancerGene	Description	DRIVER_CATEGORY	Age	pCR_vs_RD	PreTxTumorSizeClinOrRad	Tumor_size_surgery(cm)	Grade	group	Ki67_biopsy	NumPosLn	ANTHRACYCLINE	TAXANE	geneRef	DEPTH_PD13594a	TUM_PILEUP_MUTS_PD13594a	Pileup_MtAlpct_PD13594a	ID.2	DEPTH_PD13594c	TUM_PILEUP_MUTS_PD13594c	Pileup_MtAlpct_PD13594c	ID.3	DEPTH_PD13594d	TUM_PILEUP_MUTS_PD13594d	Pileup_MtAlpct_PD13594d	ID.4	DEPTH_PD13594e	TUM_PILEUP_MUTS_PD13594e	Pileup_MtAlpct_PD13594e	ID.5	DEPTH_PD13594f	TUM_PILEUP_MUTS_PD13594f	Pileup_MtAlpct_PD13594f	ID.6	DEPTH_PD13594g	TUM_PILEUP_MUTS_PD13594g	Pileup_MtAlpct_PD13594g	ID.7	DEPTH_PD13594h	TUM_PILEUP_MUTS_PD13594h	Pileup_MtAlpct_PD13594h	ID.8	DEPTH_PD13594i	TUM_PILEUP_MUTS_PD13594i	Pileup_MtAlpct_PD13594i	ID.9	DEPTH_PD13594j	TUM_PILEUP_MUTS_PD13594j	Pileup_MtAlpct_PD13594j
PD13594b	11	32450080	G	C	WT1	CCDS7878.2	r.1017c>g	c.732C>G	p.F244L	Sub	missense	2	UNKNOWN_OTHER	UNKNOWN	76	pS	2	2	3	1	76	2	YES	NO	WT1:p.F244L	297	0	0	11:32450080	167	3	1.8	11:32450080	237	0	0	11:32450080	174	0	0	11:32450080	211	1	0.5	11:32450080	483	24	5	11:32450080	295	12	4.1	11:32450080	229	6	2.6	11:32450080	228	5	2.2
PD13594b	4	153332930	C	T	FBXW7	CCDS3777.1	r.175g>a	c.26G>A	p.G9D	Sub	missense	2	UNKNOWN_OTHER	UNKNOWN	76	pS	2	2	3	1	76	2	YES	NO	FBXW7:p.G9D	63	0	0	4:153332930	94	0	0	4:153332930	99	0	0	4:153332930	99	0	0	4:153332930	111	0	0	4:153332930	24	4	16.7	4:153332930	90	0	0	4:153332930	101	0	0	4:153332930	103	0	0
PD13594b	X	70345320	G	C	MED12	CCDS43970.1	r.2378g>c	c.2346G>C	p.L782L	Sub	silent	2	SILENT	SILENT	76	pS	2	2	3	1	76	2	YES	NO	MED12:p.L782L	145	2	1.4	X:70345320	130	13	10	X:70345320	162	1	0.6	X:70345320	125	7	5.6	X:70345320	156	5	3.2	X:70345320	184	21	11.4	X:70345320	112	12	10.7	X:70345320	169	17	10.1	X:70345320	151	5	3.3
PD13594b	3	47162114	C	T	SETD2	CCDS2749.2	r.4055g>a	c.4012G>A	p.E1338K	Sub	missense	1	UNKNOWN_BCA	UNKNOWN	76	pS	2	2	3	1	76	2	YES	NO	SETD2:p.E1338K	97	1	1	3:47162114	180	16	8.9	3:47162114	128	0	0	3:47162114	223	6	2.7	3:47162114	185	12	6.5	3:47162114	48	6	12.5	3:47162114	194	19	9.8	3:47162114	228	22	9.6	3:47162114	232	11	4.7
PD13594b	17	7578268	A	C	TP53	CCDS11118.1	r.771u>g	c.581T>G	p.L194R	Sub	missense	1	ONCOGENIC_BCA_GENE	ONCOGENIC	76	pS	2	2	3	1	76	2	YES	NO	TP53:p.L194R	275	9	3.3	17:7578268	197	18	9.1	17:7578268	320	0	0	17:7578268	220	8	3.6	17:7578268	242	22	9.1	17:7578268	336	57	17	17:7578268	247	26	10.5	17:7578268	209	27	12.9	17:7578268	309	25	8.1