Normal	Chrom	Pos	Ref	Alt	Gene	Transcript	RNA	CDS	Protein	Type	Effect	CancerGene	Description	DRIVER_CATEGORY	Age	pCR_vs_RD	PreTxTumorSizeClinOrRad	Tumor_size_surgery(cm)	Grade	group	Ki67_biopsy	NumPosLn	ANTHRACYCLINE	TAXANE	geneRef	DEPTH_PD14705a	TUM_PILEUP_MUTS_PD14705a	Pileup_MtAlpct_PD14705a	ID.2	DEPTH_PD14705c	TUM_PILEUP_MUTS_PD14705c	Pileup_MtAlpct_PD14705c	ID.3	DEPTH_PD14705d	TUM_PILEUP_MUTS_PD14705d	Pileup_MtAlpct_PD14705d	ID.4	DEPTH_PD14705e	TUM_PILEUP_MUTS_PD14705e	Pileup_MtAlpct_PD14705e	ID.5	DEPTH_PD14705f	TUM_PILEUP_MUTS_PD14705f	Pileup_MtAlpct_PD14705f	ID.6	DEPTH_PD14705g	TUM_PILEUP_MUTS_PD14705g	Pileup_MtAlpct_PD14705g	ID.7	DEPTH_PD14705h	TUM_PILEUP_MUTS_PD14705h	Pileup_MtAlpct_PD14705h	ID.8	DEPTH_PD14705i	TUM_PILEUP_MUTS_PD14705i	Pileup_MtAlpct_PD14705i	ID.9	DEPTH_PD14705j	TUM_PILEUP_MUTS_PD14705j	Pileup_MtAlpct_PD14705j	ID.10	DEPTH_PD14705k	TUM_PILEUP_MUTS_PD14705k	Pileup_MtAlpct_PD14705k
PD14705b	8	139606286	C	G	COL22A1	CCDS6376.1	r.5036g>c	c.4589G>C	p.G1530A	Sub	missense	3	UNCERTAIN_CANCER_GENE_STATUS_IN_BCA	UNKNOWN	89	pS	4.5	4.5	3	3	50	5	NO	NO	COL22A1:p.G1530A	124	22	17.7	8:139606286	151	12	7.9	8:139606286	242	25	10.3	8:139606286	146	10	6.8	8:139606286	202	26	12.9	8:139606286	221	24	10.9	8:139606286	106	5	4.7	8:139606286	167	22	13.2	8:139606286	98	1	1	8:139606286	282	11	3.9
PD14705b	17	65908730	G	T	BPTF	CCDS11673.1	r.4931g>u	c.4730G>T	p.G1577V	Sub	missense	3	UNCERTAIN_CANCER_GENE_STATUS_IN_BCA	UNKNOWN	89	pS	4.5	4.5	3	3	50	5	NO	NO	BPTF:p.G1577V	174	9	5.2	17:65908730	148	0	0	17:65908730	95	0	0	17:65908730	121	0	0	17:65908730	102	0	0	17:65908730	77	0	0	17:65908730	144	0	0	17:65908730	147	0	0	17:65908730	163	0	0	17:65908730	154	0	0
PD14705b	4	153258964	A	G	FBXW7	CCDS3777.1	r.1000u>c	c.851T>C	p.L284P	Sub	missense	2	UNKNOWN_OTHER	UNKNOWN	89	pS	4.5	4.5	3	3	50	5	NO	NO	FBXW7:p.L284P	92	9	9.8	4:153258964	59	0	0	4:153258964	14	0	0	4:153258964	76	0	0	4:153258964	46	0	0	4:153258964	42	0	0	4:153258964	101	0	0	4:153258964	22	0	0	4:153258964	120	0	0	4:153258964	46	0	0
PD14705b	6	117730805	G	C	ROS1	CCDS5116.1	r.428c>g	c.229C>G	p.R77G	Sub	missense	3	UNCERTAIN_CANCER_GENE_STATUS_IN_BCA	UNKNOWN	89	pS	4.5	4.5	3	3	50	5	NO	NO	ROS1:p.R77G	62	32	51.6	6:117730805	81	25	30.9	6:117730805	126	26	20.6	6:117730805	63	9	14.3	6:117730805	93	19	20.4	6:117730805	60	15	25	6:117730805	66	7	10.6	6:117730805	110	23	20.9	6:117730805	98	3	3.1	6:117730805	132	6	4.5
PD14705b	11	118374275	A	G	MLL	CCDS31686.1	r.7682a>g	c.7659A>G	p.T2553T	Sub	silent	1	SILENT	SILENT	89	pS	4.5	4.5	3	3	50	5	NO	NO	MLL:p.T2553T	212	74	34.9	11:118374275	213	81	38	11:118374275	223	80	35.9	11:118374275	182	46	25.3	11:118374275	207	56	27.1	11:118374275	143	47	32.9	11:118374275	174	35	20.1	11:118374275	342	125	36.5	11:118374275	243	16	6.6	11:118374275	245	36	14.7
PD14705b	17	7578406	C	T	TP53	CCDS11118.1	r.714g>a	c.524G>A	p.R175H	Sub	missense	1	CANONICAL_ONCOGENIC_BCA_GENE	ONCOGENIC	89	pS	4.5	4.5	3	3	50	5	NO	NO	TP53:p.R175H	211	112	53.1	17:7578406	204	86	42.2	17:7578406	339	184	54.3	17:7578406	261	96	36.8	17:7578406	342	156	45.6	17:7578406	353	179	50.7	17:7578406	179	74	41.3	17:7578406	255	126	49.4	17:7578406	169	18	10.7	17:7578406	638	133	20.8