Normal	Chrom	Pos	Ref	Alt	Gene	Transcript	RNA	CDS	Protein	Type	Effect	CancerGene	Description	DRIVER_CATEGORY	Age	pCR_vs_RD	PreTxTumorSizeClinOrRad	Tumor_size_surgery(cm)	Grade	group	Ki67_biopsy	NumPosLn	ANTHRACYCLINE	TAXANE	geneRef	DEPTH_PD14748a	TUM_PILEUP_MUTS_PD14748a	Pileup_MtAlpct_PD14748a	ID.2	DEPTH_PD14748c	TUM_PILEUP_MUTS_PD14748c	Pileup_MtAlpct_PD14748c	ID.3	DEPTH_PD14748d	TUM_PILEUP_MUTS_PD14748d	Pileup_MtAlpct_PD14748d	ID.4	DEPTH_PD14748e	TUM_PILEUP_MUTS_PD14748e	Pileup_MtAlpct_PD14748e	ID.5	DEPTH_PD14748f	TUM_PILEUP_MUTS_PD14748f	Pileup_MtAlpct_PD14748f	ID.6	DEPTH_PD14748g	TUM_PILEUP_MUTS_PD14748g	Pileup_MtAlpct_PD14748g	ID.7	DEPTH_PD14748h	TUM_PILEUP_MUTS_PD14748h	Pileup_MtAlpct_PD14748h
PD14748b	3	47165230	C	A	SETD2	CCDS2749.2	r.939g>u	c.896G>T	p.S299I	Sub	missense	1	UNKNOWN_BCA	UNKNOWN	49	RD	5	3.8	1	3	5	1	YES	YES	SETD2:p.S299I	4	0	0	3:47165230	46	3	6.5	3:47165230	80	0	0	3:47165230	313	0	0	3:47165230	165	1	0.6	3:47165230	41	0	0	3:47165230	55	0	0
PD14748b	3	178936082	G	A	PIK3CA	CCDS43171.1	r.1781g>a	c.1624G>A	p.E542K	Sub	missense	1	CANONICAL_ONCOGENIC_BCA_GENE	ONCOGENIC	49	RD	5	3.8	1	3	5	1	YES	YES	PIK3CA:p.E542K	1	0	0	3:178936082	26	5	19.2	3:178936082	78	6	7.7	3:178936082	315	18	5.7	3:178936082	181	11	6.1	3:178936082	33	2	6.1	3:178936082	57	2	3.5