Normal	Chrom	Pos	Ref	Alt	Gene	Transcript	RNA	CDS	Protein	Type	Effect	CancerGene	Description	DRIVER_CATEGORY	Age	pCR_vs_RD	PreTxTumorSizeClinOrRad	Tumor_size_surgery(cm)	Grade	group	Ki67_biopsy	NumPosLn	ANTHRACYCLINE	TAXANE	geneRef	DEPTH_PD14750a	TUM_PILEUP_MUTS_PD14750a	Pileup_MtAlpct_PD14750a	ID.2	DEPTH_PD14750c	TUM_PILEUP_MUTS_PD14750c	Pileup_MtAlpct_PD14750c	ID.3	DEPTH_PD14750d	TUM_PILEUP_MUTS_PD14750d	Pileup_MtAlpct_PD14750d
PD14750b	3	151078261	G	A	MED12L	CCDS33876.1	r.2759-1g>a	c.2721-1G>A	p.?	Sub	ess splice	3	UNCERTAIN_CANCER_GENE_STATUS_IN_BCA	UNKNOWN	29	pCR	2	0	3	1	80	0	YES	YES	MED12L:p.?	608	96	15.8	3:151078261	284	34	12	3:151078261	537	61	11.4
PD14750b	19	18279943	G	A	PIK3R2	CCDS12371.1	r.2626g>a	c.2026G>A	p.G676S	Sub	missense	3	UNCERTAIN_CANCER_GENE_STATUS_IN_BCA	UNKNOWN	29	pCR	2	0	3	1	80	0	YES	YES	PIK3R2:p.G676S	70	3	4.3	19:18279943	77	4	5.2	19:18279943	26	5	19.2
PD14750b	12	53876800	C	G	MAP3K12	CCDS8860.1	r.1786g>c	c.1688G>C	p.R563P	Sub	missense	3	UNCERTAIN_CANCER_GENE_STATUS_IN_BCA	UNKNOWN	29	pCR	2	0	3	1	80	0	YES	YES	MAP3K12:p.R563P	358	107	29.9	12:53876800	264	64	24.2	12:53876800	224	53	23.7
PD14750b	3	47079190	A	C	SETD2	CCDS2749.2	r.7359u>g	c.7316T>G	p.L2439R	Sub	missense	1	UNKNOWN_BCA	UNKNOWN	29	pCR	2	0	3	1	80	0	YES	YES	SETD2:p.L2439R	162	67	41.4	3:47079190	89	37	41.6	3:47079190	154	72	46.8
PD14750b	17	7577129	A	C	TP53	CCDS11118.1	r.999u>g	c.809T>G	p.F270C	Sub	missense	1	ONCOGENIC_BCA_GENE	ONCOGENIC	29	pCR	2	0	3	1	80	0	YES	YES	TP53:p.F270C	400	209	52.2	17:7577129	177	86	48.6	17:7577129	283	153	54.1