Normal	Chrom	Pos	Ref	Alt	Gene	Transcript	RNA	CDS	Protein	Type	Effect	CancerGene	Description	DRIVER_CATEGORY	Age	pCR_vs_RD	PreTxTumorSizeClinOrRad	Tumor_size_surgery(cm)	Grade	group	Ki67_biopsy	NumPosLn	ANTHRACYCLINE	TAXANE	geneRef	DEPTH_PD14754a	TUM_PILEUP_MUTS_PD14754a	Pileup_MtAlpct_PD14754a	ID.2	DEPTH_PD14754c	TUM_PILEUP_MUTS_PD14754c	Pileup_MtAlpct_PD14754c
PD14754b	5	180039582	C	A	FLT4	CCDS4457.1	r.3540g>u	c.3461G>T	p.G1154V	Sub	missense	3	UNCERTAIN_CANCER_GENE_STATUS_IN_BCA	UNKNOWN	58	RD	2.4	0.5	3	3	60	1	YES	YES	FLT4:p.G1154V	202	97	48	5:180039582	154	79	51.3
PD14754b	22	38379483	G	A	SOX10	CCDS13964.1	r.592c>u	c.309C>T	p.H103H	Sub	silent	3	SILENT	SILENT	58	RD	2.4	0.5	3	3	60	1	YES	YES	SOX10:p.H103H	194	75	38.7	22:38379483	180	58	32.2
PD14754b	14	81609290	T	G	TSHR	CCDS9872.1	r.1044u>g	c.888T>G	p.L296L	Sub	silent	3	SILENT	SILENT	58	RD	2.4	0.5	3	3	60	1	YES	YES	TSHR:p.L296L	135	54	40	14:81609290	90	35	38.9
PD14754b	13	28623606	T	C	FLT3	CCDS31953.1	r.1033a>g	c.951A>G	p.V317V	Sub	silent	2	UNKNOWN_OTHER	SILENT	58	RD	2.4	0.5	3	3	60	1	YES	YES	FLT3:p.V317V	59	8	13.6	13:28623606	101	17	16.8
PD14754b	19	1223083	C	G	STK11	CCDS45896.1	r.2135c>g	c.1020C>G	p.Y340*	Sub	nonsense	1	DAMAGING_IN_BCA_GENE	ONCOGENIC	58	RD	2.4	0.5	3	3	60	1	YES	YES	STK11:p.Y340*	238	185	77.7	19:1223083	185	126	68.1