Normal	Chrom	Pos	Ref	Alt	Gene	Transcript	RNA	CDS	Protein	Type	Effect	CancerGene	Description	DRIVER_CATEGORY	Age	pCR_vs_RD	PreTxTumorSizeClinOrRad	Tumor_size_surgery(cm)	Grade	group	Ki67_biopsy	NumPosLn	ANTHRACYCLINE	TAXANE	geneRef	DEPTH_PD14756a	TUM_PILEUP_MUTS_PD14756a	Pileup_MtAlpct_PD14756a	ID.2	DEPTH_PD14756c	TUM_PILEUP_MUTS_PD14756c	Pileup_MtAlpct_PD14756c
PD14756b	5	176518800	G	A	FGFR4	CCDS4410.1	r.963g>a	c.718G>A	p.D240N	Sub	missense	3	UNCERTAIN_CANCER_GENE_STATUS_IN_BCA	UNKNOWN	47	pCR	3.2	0	3	1	60	0	YES	YES	FGFR4:p.D240N	118	20	16.9	5:176518800	109	0	0
PD14756b	20	57428453	C	T	GNAS	CCDS46622.1	r.136c>u	c.133C>T	p.P45S	Sub	missense	3	UNCERTAIN_CANCER_GENE_STATUS_IN_BCA	UNKNOWN	47	pCR	3.2	0	3	1	60	0	YES	YES	GNAS:p.P45S	617	130	21.1	20:57428453	450	125	27.8
PD14756b	3	77617532	C	T	ROBO2	CCDS43109.1	r.2818c>u	c.1918C>T	p.R640C	Sub	missense	3	UNCERTAIN_CANCER_GENE_STATUS_IN_BCA	UNKNOWN	47	pCR	3.2	0	3	1	60	0	YES	YES	ROBO2:p.R640C	242	77	31.8	3:77617532	166	63	38
PD14756b	17	7578460	A	C	TP53	CCDS11118.1	r.660u>g	c.470T>G	p.V157G	Sub	missense	1	ONCOGENIC_BCA_GENE	ONCOGENIC	47	pCR	3.2	0	3	1	60	0	YES	YES	TP53:p.V157G	233	113	48.5	17:7578460	363	216	59.5