Normal	Chrom	Pos	Ref	Alt	Gene	Transcript	RNA	CDS	Protein	Type	Effect	CancerGene	Description	DRIVER_CATEGORY	Age	pCR_vs_RD	PreTxTumorSizeClinOrRad	Tumor_size_surgery(cm)	Grade	group	Ki67_biopsy	NumPosLn	ANTHRACYCLINE	TAXANE	geneRef	DEPTH_PD14762a	TUM_PILEUP_MUTS_PD14762a	Pileup_MtAlpct_PD14762a	ID.2	DEPTH_PD14762c	TUM_PILEUP_MUTS_PD14762c	Pileup_MtAlpct_PD14762c	ID.3	DEPTH_PD14762d	TUM_PILEUP_MUTS_PD14762d	Pileup_MtAlpct_PD14762d	ID.4	DEPTH_PD14762e	TUM_PILEUP_MUTS_PD14762e	Pileup_MtAlpct_PD14762e	ID.5	DEPTH_PD14762f	TUM_PILEUP_MUTS_PD14762f	Pileup_MtAlpct_PD14762f	ID.6	DEPTH_PD14762g	TUM_PILEUP_MUTS_PD14762g	Pileup_MtAlpct_PD14762g	ID.7	DEPTH_PD14762h	TUM_PILEUP_MUTS_PD14762h	Pileup_MtAlpct_PD14762h	ID.8	DEPTH_PD14762i	TUM_PILEUP_MUTS_PD14762i	Pileup_MtAlpct_PD14762i	ID.9	DEPTH_PD14762j	TUM_PILEUP_MUTS_PD14762j	Pileup_MtAlpct_PD14762j	ID.10	DEPTH_PD14762k	TUM_PILEUP_MUTS_PD14762k	Pileup_MtAlpct_PD14762k	ID.11	DEPTH_PD14762l	TUM_PILEUP_MUTS_PD14762l	Pileup_MtAlpct_PD14762l
PD14762b	9	98011553	A	C	FANCC	CCDS35071.1	r.276u>g	c.21T>G	p.D7E	Sub	missense	3	UNCERTAIN_CANCER_GENE_STATUS_IN_BCA	UNKNOWN	49	RD	3.1	3	2	1	20	8	YES	NO	FANCC:p.D7E	121	6	5	9:98011553	52	1	1.9	9:98011553	115	0	0	9:98011553	141	14	9.9	9:98011553	93	0	0	9:98011553	108	0	0	9:98011553	61	0	0	9:98011553	188	0	0	9:98011553	157	5	3.2	9:98011553	144	0	0	9:98011553	80	0	0
PD14762b	3	178952085	A	T	PIK3CA	CCDS43171.1	r.3297a>u	c.3140A>T	p.H1047L	Sub	missense	1	CANONICAL_ONCOGENIC_BCA_GENE	ONCOGENIC	49	RD	3.1	3	2	1	20	8	YES	NO	PIK3CA:p.H1047L	24	0	0	3:178952085	50	0	0	3:178952085	92	0	0	3:178952085	91	0	0	3:178952085	105	0	0	3:178952085	126	0	0	3:178952085	77	0	0	3:178952085	117	0	0	3:178952085	133	0	0	3:178952085	120	0	0	3:178952085	53	0	0
PD14762b	17	7578479	G	A	TP53	CCDS11118.1	r.641c>u	c.451C>T	p.P151S	Sub	missense	1	ONCOGENIC_BCA_GENE	ONCOGENIC	49	RD	3.1	3	2	1	20	8	YES	NO	TP53:p.P151S	451	59	13.1	17:7578479	203	30	14.8	17:7578479	185	27	14.6	17:7578479	367	31	8.4	17:7578479	443	8	1.8	17:7578479	365	21	5.8	17:7578479	424	11	2.6	17:7578479	271	5	1.8	17:7578479	241	5	2.1	17:7578479	382	5	1.3	17:7578479	298	6	2