Normal	Chrom	Pos	Ref	Alt	Gene	Transcript	RNA	CDS	Protein	Type	Effect	CancerGene	Description	DRIVER_CATEGORY	Age	pCR_vs_RD	PreTxTumorSizeClinOrRad	Tumor_size_surgery(cm)	Grade	group	Ki67_biopsy	NumPosLn	ANTHRACYCLINE	TAXANE	geneRef	DEPTH_PD14763a	TUM_PILEUP_MUTS_PD14763a	Pileup_MtAlpct_PD14763a	ID.2	DEPTH_PD14763c	TUM_PILEUP_MUTS_PD14763c	Pileup_MtAlpct_PD14763c	ID.3	DEPTH_PD14763d	TUM_PILEUP_MUTS_PD14763d	Pileup_MtAlpct_PD14763d	ID.4	DEPTH_PD14763e	TUM_PILEUP_MUTS_PD14763e	Pileup_MtAlpct_PD14763e	ID.5	DEPTH_PD14763f	TUM_PILEUP_MUTS_PD14763f	Pileup_MtAlpct_PD14763f	ID.6	DEPTH_PD14763g	TUM_PILEUP_MUTS_PD14763g	Pileup_MtAlpct_PD14763g	ID.7	DEPTH_PD14763h	TUM_PILEUP_MUTS_PD14763h	Pileup_MtAlpct_PD14763h	ID.8	DEPTH_PD14763i	TUM_PILEUP_MUTS_PD14763i	Pileup_MtAlpct_PD14763i	ID.9	DEPTH_PD14763j	TUM_PILEUP_MUTS_PD14763j	Pileup_MtAlpct_PD14763j	ID.10	DEPTH_PD14763k	TUM_PILEUP_MUTS_PD14763k	Pileup_MtAlpct_PD14763k	ID.11	DEPTH_PD14763l	TUM_PILEUP_MUTS_PD14763l	Pileup_MtAlpct_PD14763l	ID.12	DEPTH_PD14763m	TUM_PILEUP_MUTS_PD14763m	Pileup_MtAlpct_PD14763m	ID.13	DEPTH_PD14763n	TUM_PILEUP_MUTS_PD14763n	Pileup_MtAlpct_PD14763n	ID.14	DEPTH_PD14763o	TUM_PILEUP_MUTS_PD14763o	Pileup_MtAlpct_PD14763o	ID.15	DEPTH_PD14763p	TUM_PILEUP_MUTS_PD14763p	Pileup_MtAlpct_PD14763p
PD14763b	17	12028657	G	A	MAP2K4	CCDS11162.1	r.923g>a	c.860G>A	p.R287H	Sub	missense	1	ONCOGENIC_BCA_GENE	ONCOGENIC	32	RD	4	2.4	3	3	50	1	YES	YES	MAP2K4:p.R287H	51	32	62.7	17:12028657	47	25	53.2	17:12028657	115	47	40.9	17:12028657	40	14	35	17:12028657	82	24	29.3	17:12028657	83	34	41	17:12028657	131	40	30.5	17:12028657	97	34	35.1	17:12028657	43	11	25.6	17:12028657	39	14	35.9	17:12028657	29	9	31	17:12028657	36	17	47.2	17:12028657	143	39	27.3	17:12028657	72	18	25	17:12028657	36	12	33.3
PD14763b	5	180040015	C	T	FLT4	CCDS4457.1	r.3506g>a	c.3427G>A	p.A1143T	Sub	missense	3	UNCERTAIN_CANCER_GENE_STATUS_IN_BCA	UNKNOWN	32	RD	4	2.4	3	3	50	1	YES	YES	FLT4:p.A1143T	129	21	16.3	5:180040015	59	14	23.7	5:180040015	111	20	18	5:180040015	30	7	23.3	5:180040015	50	5	10	5:180040015	81	10	12.3	5:180040015	44	3	6.8	5:180040015	76	7	9.2	5:180040015	26	0	0	5:180040015	36	11	30.6	5:180040015	34	3	8.8	5:180040015	43	10	23.3	5:180040015	45	5	11.1	5:180040015	38	3	7.9	5:180040015	18	7	38.9