Normal	Chrom	Pos	Ref	Alt	Gene	Transcript	RNA	CDS	Protein	Type	Effect	CancerGene	Description	DRIVER_CATEGORY	Age	pCR_vs_RD	PreTxTumorSizeClinOrRad	Tumor_size_surgery(cm)	Grade	group	Ki67_biopsy	NumPosLn	ANTHRACYCLINE	TAXANE	geneRef	DEPTH_PD14767a	TUM_PILEUP_MUTS_PD14767a	Pileup_MtAlpct_PD14767a	ID.2	DEPTH_PD14767c	TUM_PILEUP_MUTS_PD14767c	Pileup_MtAlpct_PD14767c	ID.3	DEPTH_PD14767d	TUM_PILEUP_MUTS_PD14767d	Pileup_MtAlpct_PD14767d	ID.4	DEPTH_PD14767e	TUM_PILEUP_MUTS_PD14767e	Pileup_MtAlpct_PD14767e	ID.5	DEPTH_PD14767f	TUM_PILEUP_MUTS_PD14767f	Pileup_MtAlpct_PD14767f	ID.6	DEPTH_PD14767g	TUM_PILEUP_MUTS_PD14767g	Pileup_MtAlpct_PD14767g	ID.7	DEPTH_PD14767h	TUM_PILEUP_MUTS_PD14767h	Pileup_MtAlpct_PD14767h
PD14767b	10	89653815	C	T	PTEN	ENST00000371953	r.1470c>u	c.113C>T	p.P38L	Sub	missense	1	UNKNOWN_BCA	UNKNOWN	46	RD	3.2	3	3	3	25	0	YES	YES	PTEN:p.P38L	74	7	9.5	10:89653815	62	2	3.2	10:89653815	79	2	2.5	10:89653815	240	3	1.2	10:89653815	201	15	7.5	10:89653815	138	7	5.1	10:89653815	275	25	9.1
PD14767b	6	117665418	C	T	ROS1	CCDS5116.1	r.4528g>a	c.4329G>A	p.A1443A	Sub	silent	3	SILENT	SILENT	46	RD	3.2	3	3	3	25	0	YES	YES	ROS1:p.A1443A	94	12	12.8	6:117665418	102	10	9.8	6:117665418	83	1	1.2	6:117665418	185	0	0	6:117665418	116	13	11.2	6:117665418	93	0	0	6:117665418	130	10	7.7
PD14767b	3	178952085	A	G	PIK3CA	CCDS43171.1	r.3297a>g	c.3140A>G	p.H1047R	Sub	missense	1	CANONICAL_ONCOGENIC_BCA_GENE	ONCOGENIC	46	RD	3.2	3	3	3	25	0	YES	YES	PIK3CA:p.H1047R	100	44	44	3:178952085	100	30	30	3:178952085	103	19	18.4	3:178952085	232	13	5.6	3:178952085	154	63	40.9	3:178952085	122	13	10.7	3:178952085	127	54	42.5
PD14767b	17	7578406	C	T	TP53	CCDS11118.1	r.714g>a	c.524G>A	p.R175H	Sub	missense	1	CANONICAL_ONCOGENIC_BCA_GENE	ONCOGENIC	46	RD	3.2	3	3	3	25	0	YES	YES	TP53:p.R175H	192	58	30.2	17:7578406	264	72	27.3	17:7578406	363	29	8	17:7578406	113	2	1.8	17:7578406	204	78	38.2	17:7578406	288	25	8.7	17:7578406	95	36	37.9