Normal	Chrom	Pos	Ref	Alt	Gene	Transcript	RNA	CDS	Protein	Type	Effect	CancerGene	Description	DRIVER_CATEGORY	Age	pCR_vs_RD	PreTxTumorSizeClinOrRad	Tumor_size_surgery(cm)	Grade	group	Ki67_biopsy	NumPosLn	ANTHRACYCLINE	TAXANE	geneRef	DEPTH_PD14769a	TUM_PILEUP_MUTS_PD14769a	Pileup_MtAlpct_PD14769a	ID.2	DEPTH_PD14769c	TUM_PILEUP_MUTS_PD14769c	Pileup_MtAlpct_PD14769c
PD14769b	18	48591901	A	G	SMAD4	CCDS11950.1	r.1602a>g	c.1064A>G	p.D355G	Sub	missense	1	POSSIBLE_ONCOGENIC	POSSIBLE_ONCOGENIC	53	pCR	6	0	2	2	25	0	YES	YES	SMAD4:p.D355G	127	10	7.9	18:48591901	115	6	5.2
PD14769b	12	96640988	G	T	ELK3	CCDS9060.1	r.757g>u	c.478G>T	p.A160S	Sub	missense	3	UNCERTAIN_CANCER_GENE_STATUS_IN_BCA	UNKNOWN	53	pCR	6	0	2	2	25	0	YES	YES	ELK3:p.A160S	142	29	20.4	12:96640988	112	33	29.5
PD14769b	17	38450738	C	A	CDC6	CCDS11365.1	r.1537c>a	c.1066C>A	p.Q356K	Sub	missense	3	UNCERTAIN_CANCER_GENE_STATUS_IN_BCA	UNKNOWN	53	pCR	6	0	2	2	25	0	YES	YES	CDC6:p.Q356K	1199	35	2.9	17:38450738	1536	48	3.1
PD14769b	2	25472561	G	A	DNMT3A	CCDS1718.2	r.151c>u	c.37C>T	p.R13C	Sub	missense	2	UNKNOWN_OTHER	UNKNOWN	53	pCR	6	0	2	2	25	0	YES	YES	DNMT3A:p.R13C	212	39	18.4	2:25472561	222	45	20.3