Normal	Chrom	Pos	Ref	Alt	Gene	Transcript	RNA	CDS	Protein	Type	Effect	CancerGene	Description	DRIVER_CATEGORY	Age	pCR_vs_RD	PreTxTumorSizeClinOrRad	Tumor_size_surgery(cm)	Grade	group	Ki67_biopsy	NumPosLn	ANTHRACYCLINE	TAXANE	geneRef	DEPTH_PD14770a	TUM_PILEUP_MUTS_PD14770a	Pileup_MtAlpct_PD14770a	ID.2	DEPTH_PD14770c	TUM_PILEUP_MUTS_PD14770c	Pileup_MtAlpct_PD14770c	ID.3	DEPTH_PD14770d	TUM_PILEUP_MUTS_PD14770d	Pileup_MtAlpct_PD14770d
PD14770b	6	138199702	G	T	TNFAIP3	CCDS5187.1	r.1186g>u	c.1120G>T	p.E374*	Sub	nonsense	3	UNCERTAIN_CANCER_GENE_STATUS_IN_BCA	UNKNOWN	61	RD	2.8	1.4	3	2	80	0	YES	YES	TNFAIP3:p.E374*	305	4	1.3	6:138199702	446	25	5.6	6:138199702	224	0	0
PD14770b	1	154942698	G	C	SHC1	CCDS44233.1	r.526c>g	c.305C>G	p.S102*	Sub	nonsense	3	UNCERTAIN_CANCER_GENE_STATUS_IN_BCA	UNKNOWN	61	RD	2.8	1.4	3	2	80	0	YES	YES	SHC1:p.S102*	434	3	0.7	1:154942698	725	76	10.5	1:154942698	167	0	0
PD14770b	3	178952085	A	G	PIK3CA	CCDS43171.1	r.3297a>g	c.3140A>G	p.H1047R	Sub	missense	1	CANONICAL_ONCOGENIC_BCA_GENE	ONCOGENIC	61	RD	2.8	1.4	3	2	80	0	YES	YES	PIK3CA:p.H1047R	82	15	18.3	3:178952085	125	25	20	3:178952085	148	19	12.8