Normal	Chrom	Pos	Ref	Alt	Gene	Transcript	RNA	CDS	Protein	Type	Effect	CancerGene	Description	DRIVER_CATEGORY	Age	pCR_vs_RD	PreTxTumorSizeClinOrRad	Tumor_size_surgery(cm)	Grade	group	Ki67_biopsy	NumPosLn	ANTHRACYCLINE	TAXANE	geneRef	DEPTH_PD14774a	TUM_PILEUP_MUTS_PD14774a	Pileup_MtAlpct_PD14774a	ID.2	DEPTH_PD14774c	TUM_PILEUP_MUTS_PD14774c	Pileup_MtAlpct_PD14774c	ID.3	DEPTH_PD14774d	TUM_PILEUP_MUTS_PD14774d	Pileup_MtAlpct_PD14774d
PD14774b	7	140624476	C	G	BRAF	CCDS5863.1	r.89g>c	c.28G>C	p.G10R	Sub	missense	2	UNKNOWN_OTHER	UNKNOWN	51	pCR	2.7	0	3	1	90	1	YES	YES	BRAF:p.G10R	215	0	0	7:140624476	176	0	0	7:140624476	127	21	16.5
PD14774b	6	157511229	G	A	ARID1B	CCDS5251.1	r.3845g>a	c.3693G>A	p.P1231P	Sub	silent	2	SILENT	SILENT	51	pCR	2.7	0	3	1	90	1	YES	YES	ARID1B:p.P1231P	520	0	0	6:157511229	548	9	1.6	6:157511229	402	122	30.3
PD14774b	8	69136848	C	A	PREX2	CCDS6201.1	r.5039c>a	c.4762C>A	p.Q1588K	Sub	missense	3	UNCERTAIN_CANCER_GENE_STATUS_IN_BCA	UNKNOWN	51	pCR	2.7	0	3	1	90	1	YES	YES	PREX2:p.Q1588K	385	86	22.3	8:69136848	317	56	17.7	8:69136848	363	52	14.3
PD14774b	14	95572535	G	T	DICER1	CCDS9931.1	r.3068c>a	c.2830C>A	p.R944R	Sub	silent	3	SILENT	SILENT	51	pCR	2.7	0	3	1	90	1	YES	YES	DICER1:p.R944R	24	4	16.7	14:95572535	23	0	0	14:95572535	120	0	0
PD14774b	16	2120566	G	T	TSC2	CCDS10458.1	r.2456g>u	c.1826G>T	p.S609I	Sub	missense	3	UNCERTAIN_CANCER_GENE_STATUS_IN_BCA	UNKNOWN	51	pCR	2.7	0	3	1	90	1	YES	YES	TSC2:p.S609I	1046	345	33	16:2120566	909	268	29.5	16:2120566	368	137	37.2
PD14774b	6	44218306	T	C	HSP90AB1	CCDS4909.1	r.1141u>c	c.927T>C	p.T309T	Sub	silent	2	SILENT	SILENT	51	pCR	2.7	0	3	1	90	1	YES	YES	HSP90AB1:p.T309T	86	39	45.3	6:44218306	104	13	12.5	6:44218306	137	0	0