Normal	Chrom	Pos	Ref	Alt	Gene	Transcript	RNA	CDS	Protein	Type	Effect	CancerGene	Description	DRIVER_CATEGORY	Age	pCR_vs_RD	PreTxTumorSizeClinOrRad	Tumor_size_surgery(cm)	Grade	group	Ki67_biopsy	NumPosLn	ANTHRACYCLINE	TAXANE	geneRef	DEPTH_PD14776a	TUM_PILEUP_MUTS_PD14776a	Pileup_MtAlpct_PD14776a	ID.2	DEPTH_PD14776c	TUM_PILEUP_MUTS_PD14776c	Pileup_MtAlpct_PD14776c	ID.3	DEPTH_PD14776d	TUM_PILEUP_MUTS_PD14776d	Pileup_MtAlpct_PD14776d
PD14776b	9	21971036	C	T	CDKN2A	CCDS6510.1	r.593g>a	c.322G>A	p.D108N	Sub	missense	1	ONCOGENIC_BCA_GENE	ONCOGENIC	50	RD	2.4	2.1	3	1	70	0	YES	YES	CDKN2A:p.D108N	282	88	31.2	9:21971036	414	73	17.6	9:21971036	503	0	0
PD14776b	17	7578393	A	T	TP53	CCDS11118.1	r.727u>a	c.537T>A	p.H179Q	Sub	missense	1	ONCOGENIC_BCA_GENE	ONCOGENIC	50	RD	2.4	2.1	3	1	70	0	YES	YES	TP53:p.H179Q	232	71	30.6	17:7578393	340	61	17.9	17:7578393	85	0	0
PD14776b	X	63410260	C	T	FAM123B	CCDS14377.2	r.3180g>a	c.2907G>A	p.G969G	Sub	silent	3	SILENT	SILENT	50	RD	2.4	2.1	3	1	70	0	YES	YES	FAM123B:p.G969G	114	0	0	X:63410260	133	0	0	X:63410260	79	10	12.7
PD14776b	17	60142510	G	C	MED13	CCDS42366.1	r.134c>g	c.57C>G	p.L19L	Sub	silent	3	SILENT	SILENT	50	RD	2.4	2.1	3	1	70	0	YES	YES	MED13:p.L19L	295	10	3.4	17:60142510	377	15	4	17:60142510	513	0	0
PD14776b	20	39794915	C	T	PLCG1	CCDS13313.1	r.2286c>u	c.1881C>T	p.L627L	Sub	silent	3	SILENT	SILENT	50	RD	2.4	2.1	3	1	70	0	YES	YES	PLCG1:p.L627L	238	37	15.5	20:39794915	333	27	8.1	20:39794915	185	0	0
PD14776b	20	57428833	G	A	GNAS	CCDS46622.1	r.516g>a	c.513G>A	p.Q171Q	Sub	silent	3	SILENT	SILENT	50	RD	2.4	2.1	3	1	70	0	YES	YES	GNAS:p.Q171Q	152	21	13.8	20:57428833	180	12	6.7	20:57428833	150	0	0
PD14776b	X	39935756	G	A	BCOR	CCDS48093.1	r.345c>u	c.116C>T	p.S39L	Sub	missense	2	UNKNOWN_OTHER	UNKNOWN	50	RD	2.4	2.1	3	1	70	0	YES	YES	BCOR:p.S39L	172	17	9.9	X:39935756	126	8	6.3	X:39935756	156	0	0
PD14776b	3	87325590	G	A	POU1F1	CCDS46873.1	r.108c>u	c.23C>T	p.S8L	Sub	missense	3	UNCERTAIN_CANCER_GENE_STATUS_IN_BCA	UNKNOWN	50	RD	2.4	2.1	3	1	70	0	YES	YES	POU1F1:p.S8L	109	19	17.4	3:87325590	118	7	5.9	3:87325590	243	0	0
PD14776b	16	2115600	G	A	TSC2	CCDS10458.1	r.2310g>a	c.1680G>A	p.V560V	Sub	silent	3	SILENT	SILENT	50	RD	2.4	2.1	3	1	70	0	YES	YES	TSC2:p.V560V	132	15	11.4	16:2115600	151	7	4.6	16:2115600	33	1	3