Normal	Chrom	Pos	Ref	Alt	Gene	Transcript	RNA	CDS	Protein	Type	Effect	CancerGene	Description	DRIVER_CATEGORY	Age	pCR_vs_RD	PreTxTumorSizeClinOrRad	Tumor_size_surgery(cm)	Grade	group	Ki67_biopsy	NumPosLn	ANTHRACYCLINE	TAXANE	geneRef	DEPTH_PD14779a	TUM_PILEUP_MUTS_PD14779a	Pileup_MtAlpct_PD14779a	ID.2	DEPTH_PD14779c	TUM_PILEUP_MUTS_PD14779c	Pileup_MtAlpct_PD14779c
PD14779b	X	41043697	T	G	USP9X	CCDS43930.1	r.3960u>g	c.3327T>G	p.D1109E	Sub	missense	3	UNCERTAIN_CANCER_GENE_STATUS_IN_BCA	UNKNOWN	47	RD	3	5	2	3	20	2	YES	YES	USP9X:p.D1109E	84	24	28.6	X:41043697	79	21	26.6
PD14779b	17	47696698	G	C	SPOP	CCDS11551.1	r.647c>g	c.250C>G	p.L84V	Sub	missense	2	UNKNOWN_OTHER	UNKNOWN	47	RD	3	5	2	3	20	2	YES	YES	SPOP:p.L84V	123	37	30.1	17:47696698	117	40	34.2
PD14779b	13	28674612	C	A	FLT3	CCDS31953.1	r.118g>u	c.36G>T	p.P12P	Sub	silent	2	UNKNOWN_OTHER	SILENT	47	RD	3	5	2	3	20	2	YES	YES	FLT3:p.P12P	18	11	61.1	13:28674612	12	7	58.3
PD14779b	6	32163586	C	A	NOTCH4	CCDS34420.1	r.5779g>u	c.5640G>T	p.R1880R	Sub	silent	3	SILENT	SILENT	47	RD	3	5	2	3	20	2	YES	YES	NOTCH4:p.R1880R	447	2	0.4	6:32163586	272	18	6.6
PD14779b	4	55133542	G	A	PDGFRA	CCDS3495.1	r.1177g>a	c.846G>A	p.V282V	Sub	silent	3	SILENT	SILENT	47	RD	3	5	2	3	20	2	YES	YES	PDGFRA:p.V282V	185	10	5.4	4:55133542	245	1	0.4