Normal	Chrom	Pos	Ref	Alt	Gene	Transcript	RNA	CDS	Protein	Type	Effect	CancerGene	Description	DRIVER_CATEGORY	Age	pCR_vs_RD	PreTxTumorSizeClinOrRad	Tumor_size_surgery(cm)	Grade	group	Ki67_biopsy	NumPosLn	ANTHRACYCLINE	TAXANE	geneRef	DEPTH_PD9768a	TUM_PILEUP_MUTS_PD9768a	Pileup_MtAlpct_PD9768a	ID.2	DEPTH_PD9768c	TUM_PILEUP_MUTS_PD9768c	Pileup_MtAlpct_PD9768c	ID.3	DEPTH_PD9768d	TUM_PILEUP_MUTS_PD9768d	Pileup_MtAlpct_PD9768d	ID.4	DEPTH_PD9768e	TUM_PILEUP_MUTS_PD9768e	Pileup_MtAlpct_PD9768e	ID.5	DEPTH_PD9768f	TUM_PILEUP_MUTS_PD9768f	Pileup_MtAlpct_PD9768f	ID.6	DEPTH_PD9768g	TUM_PILEUP_MUTS_PD9768g	Pileup_MtAlpct_PD9768g
PD9768b	3	52439234	C	A	BAP1	CCDS2853.1	r.1480g>u	c.1008G>T	p.V336V	Sub	silent	1	SILENT	SILENT	53	RD	4	3.4	3	1	60	0	YES	YES	BAP1:p.V336V	44	0	0	3:52439234	125	1	0.8	3:52439234	7	0	0	3:52439234	38	5	13.2	3:52439234	34	0	0	3:52439234	65	0	0
PD9768b	3	52584613	G	A	PBRM1	CCDS2859.1	r.4463c>u	c.4460C>T	p.P1487L	Sub	missense	1	UNKNOWN_BCA	UNKNOWN	53	RD	4	3.4	3	1	60	0	YES	YES	PBRM1:p.P1487L	21	0	0	3:52584613	124	0	0	3:52584613	8	0	0	3:52584613	29	5	17.2	3:52584613	32	0	0	3:52584613	37	0	0
PD9768b	17	7577568	C	T	TP53	CCDS11118.1	r.903g>a	c.713G>A	p.C238Y	Sub	missense	1	ONCOGENIC_BCA_GENE	ONCOGENIC	53	RD	4	3.4	3	1	60	0	YES	YES	TP53:p.C238Y	40	10	25	17:7577568	133	38	28.6	17:7577568	4	1	25	17:7577568	34	9	26.5	17:7577568	42	13	31	17:7577568	83	29	34.9