Normal	Chrom	Pos	Ref	Alt	Gene	Transcript	RNA	CDS	Protein	Type	Effect	CancerGene	Description	DRIVER_CATEGORY	Age	pCR_vs_RD	PreTxTumorSizeClinOrRad	Tumor_size_surgery(cm)	Grade	group	Ki67_biopsy	NumPosLn	ANTHRACYCLINE	TAXANE	geneRef	DEPTH_PD9771a2	TUM_PILEUP_MUTS_PD9771a2	Pileup_MtAlpct_PD9771a2	ID.2	DEPTH_PD9771d	TUM_PILEUP_MUTS_PD9771d	Pileup_MtAlpct_PD9771d	ID.3	DEPTH_PD9771e	TUM_PILEUP_MUTS_PD9771e	Pileup_MtAlpct_PD9771e	ID.4	DEPTH_PD9771f	TUM_PILEUP_MUTS_PD9771f	Pileup_MtAlpct_PD9771f	ID.5	DEPTH_PD9771g	TUM_PILEUP_MUTS_PD9771g	Pileup_MtAlpct_PD9771g	ID.6	DEPTH_PD9771h	TUM_PILEUP_MUTS_PD9771h	Pileup_MtAlpct_PD9771h
PD9771b	19	15302325	C	T	NOTCH3	CCDS12326.1	r.1022g>a	c.946G>A	p.D316N	Sub	missense	3	UNCERTAIN_CANCER_GENE_STATUS_IN_BCA	UNKNOWN	52	RD	6	0.2	3	1	90	0	YES	NO	NOTCH3:p.D316N	126	41	32.5	19:15302325	160	21	13.1	19:15302325	87	0	0	19:15302325	39	0	0	19:15302325	25	0	0	19:15302325	35	0	0
PD9771b	4	55968128	G	C	KDR	CCDS3497.1	r.2498c>g	c.2202C>G	p.L734L	Sub	silent	3	SILENT	SILENT	52	RD	6	0.2	3	1	90	0	YES	NO	KDR:p.L734L	172	40	23.3	4:55968128	132	25	18.9	4:55968128	112	25	22.3	4:55968128	65	4	6.2	4:55968128	33	3	9.1	4:55968128	43	2	4.7
PD9771b	17	7579366	G	T	TP53	CCDS11118.1	r.511c>a	c.321C>A	p.Y107*	Sub	nonsense	1	DAMAGING_IN_BCA_GENE	ONCOGENIC	52	RD	6	0.2	3	1	90	0	YES	NO	TP53:p.Y107*	42	34	81	17:7579366	41	6	14.6	17:7579366	27	18	66.7	17:7579366	18	15	83.3	17:7579366	8	6	75	17:7579366	9	1	11.1