Normal Chrom Pos Ref Alt Gene Transcript RNA CDS Protein Type Effect CancerGene Description DRIVER_CATEGORY Age pCR_vs_RD PreTxTumorSizeClinOrRad Tumor_size_surgery(cm) Grade group Ki67_biopsy NumPosLn ANTHRACYCLINE TAXANE geneRef DEPTH_PD9774a TUM_PILEUP_MUTS_PD9774a Pileup_MtAlpct_PD9774a ID.2 DEPTH_PD9774c2 TUM_PILEUP_MUTS_PD9774c2 Pileup_MtAlpct_PD9774c2 PD9774b 11 77961271 C T GAB2 CCDS8259.1 r.552g>a c.552G>A p.L184L Sub silent 3 SILENT SILENT 40 CR 1.3 0 3 1 80 0 YES NO GAB2:p.L184L 7 0 0 11:77961271 121 11 9.1 PD9774b 17 7577509 C A TP53 CCDS11118.1 r.962g>u c.772G>T p.E258* Sub nonsense 1 DAMAGING_IN_BCA_GENE ONCOGENIC 40 CR 1.3 0 3 1 80 0 YES NO TP53:p.E258* 11 0 0 17:7577509 180 43 23.9