Normal	Chrom	Pos	Ref	Alt	Gene	Transcript	RNA	CDS	Protein	Type	Effect	CancerGene	Description	DRIVER_CATEGORY	Age	pCR_vs_RD	PreTxTumorSizeClinOrRad	Tumor_size_surgery(cm)	Grade	group	Ki67_biopsy	NumPosLn	ANTHRACYCLINE	TAXANE	geneRef	DEPTH_PD9776a	TUM_PILEUP_MUTS_PD9776a	Pileup_MtAlpct_PD9776a	ID.2	DEPTH_PD9776c2	TUM_PILEUP_MUTS_PD9776c2	Pileup_MtAlpct_PD9776c2	ID.3	DEPTH_PD9776d	TUM_PILEUP_MUTS_PD9776d	Pileup_MtAlpct_PD9776d	ID.4	DEPTH_PD9776e	TUM_PILEUP_MUTS_PD9776e	Pileup_MtAlpct_PD9776e
PD9776b	17	7577106	G	A	TP53	CCDS11118.1	r.1022c>u	c.832C>T	p.P278S	Sub	missense	1	ONCOGENIC_BCA_GENE	ONCOGENIC	54	pCR	3.5	0	2	1	90	0	YES	YES	TP53:p.P278S	117	42	35.9	17:7577106	65	13	20	17:7577106	28	10	35.7	17:7577106	13	7	53.8
PD9776b	3	150877637	C	A	MED12L	CCDS33876.1	r.894c>a	c.856C>A	p.Q286K	Sub	missense	3	UNCERTAIN_CANCER_GENE_STATUS_IN_BCA	UNKNOWN	54	pCR	3.5	0	2	1	90	0	YES	YES	MED12L:p.Q286K	203	53	26.1	3:150877637	58	13	22.4	3:150877637	53	19	35.8	3:150877637	22	5	22.7
PD9776b	22	30064364	A	G	NF2	CCDS13861.1	r.1369a>g	c.928A>G	p.R310G	Sub	missense	3	UNCERTAIN_CANCER_GENE_STATUS_IN_BCA	UNKNOWN	54	pCR	3.5	0	2	1	90	0	YES	YES	NF2:p.R310G	102	35	34.3	22:30064364	43	9	20.9	22:30064364	23	5	21.7	22:30064364	11	1	9.1
PD9776b	X	53240834	C	A	KDM5C	CCDS14351.1	r.1779g>u	c.1246G>T	p.V416L	Sub	missense	2	UNKNOWN_OTHER	UNKNOWN	54	pCR	3.5	0	2	1	90	0	YES	YES	KDM5C:p.V416L	69	15	21.7	X:53240834	37	3	8.1	X:53240834	11	5	45.5	X:53240834	2	0	0
PD9776b	20	61869927	T	A	BIRC7	CCDS13513.1	r.752u>a	c.538T>A	p.W180R	Sub	missense	3	UNCERTAIN_CANCER_GENE_STATUS_IN_BCA	UNKNOWN	54	pCR	3.5	0	2	1	90	0	YES	YES	BIRC7:p.W180R	207	43	20.8	20:61869927	67	16	23.9	20:61869927	17	2	11.8	20:61869927	7	3	42.9