Normal	Chrom	Pos	Ref	Alt	Gene	Transcript	RNA	CDS	Protein	Type	Effect	CancerGene	Description	DRIVER_CATEGORY	Age	pCR_vs_RD	PreTxTumorSizeClinOrRad	Tumor_size_surgery(cm)	Grade	group	Ki67_biopsy	NumPosLn	ANTHRACYCLINE	TAXANE	geneRef	DEPTH_PD9777a2	TUM_PILEUP_MUTS_PD9777a2	Pileup_MtAlpct_PD9777a2	ID.2	DEPTH_PD9777c2	TUM_PILEUP_MUTS_PD9777c2	Pileup_MtAlpct_PD9777c2	ID.3	DEPTH_PD9777e	TUM_PILEUP_MUTS_PD9777e	Pileup_MtAlpct_PD9777e	ID.4	DEPTH_PD9777f	TUM_PILEUP_MUTS_PD9777f	Pileup_MtAlpct_PD9777f
PD9777b	1	27689176	G	A	MAP3K6	CCDS299.1	r.1451c>u	c.1211C>T	p.A404V	Sub	missense	3	UNCERTAIN_CANCER_GENE_STATUS_IN_BCA	UNKNOWN	65	RD	4	1.8	3	1	80	2	YES	YES	MAP3K6:p.A404V	17	0	0	1:27689176	60	0	0	1:27689176	11	4	36.4	1:27689176	9	0	0
PD9777b	11	119149241	C	G	CBL	CCDS8418.1	r.1387c>g	c.1249C>G	p.P417A	Sub	missense	3	UNCERTAIN_CANCER_GENE_STATUS_IN_BCA	UNKNOWN	65	RD	4	1.8	3	1	80	2	YES	YES	CBL:p.P417A	69	9	13	11:119149241	185	2	1.1	11:119149241	19	4	21.1	11:119149241	17	7	41.2
PD9777b	8	139609181	C	A	COL22A1	CCDS6376.1	r.4845g>u	c.4398G>T	p.R1466R	Sub	silent	3	SILENT	SILENT	65	RD	4	1.8	3	1	80	2	YES	YES	COL22A1:p.R1466R	106	0	0	8:139609181	233	0	0	8:139609181	28	5	17.9	8:139609181	37	0	0