Normal	Chrom	Pos	Ref	Alt	Gene	Transcript	RNA	CDS	Protein	Type	Effect	CancerGene	Description	DRIVER_CATEGORY	Age	pCR_vs_RD	PreTxTumorSizeClinOrRad	Tumor_size_surgery(cm)	Grade	group	Ki67_biopsy	NumPosLn	ANTHRACYCLINE	TAXANE	geneRef	DEPTH_PD9849a	TUM_PILEUP_MUTS_PD9849a	Pileup_MtAlpct_PD9849a	ID.2	DEPTH_PD9849c	TUM_PILEUP_MUTS_PD9849c	Pileup_MtAlpct_PD9849c	ID.3	DEPTH_PD9849d	TUM_PILEUP_MUTS_PD9849d	Pileup_MtAlpct_PD9849d	ID.4	DEPTH_PD9849e	TUM_PILEUP_MUTS_PD9849e	Pileup_MtAlpct_PD9849e	ID.5	DEPTH_PD9849f	TUM_PILEUP_MUTS_PD9849f	Pileup_MtAlpct_PD9849f	ID.6	DEPTH_PD9849g	TUM_PILEUP_MUTS_PD9849g	Pileup_MtAlpct_PD9849g	ID.7	DEPTH_PD9849h	TUM_PILEUP_MUTS_PD9849h	Pileup_MtAlpct_PD9849h	ID.8	DEPTH_PD9849i	TUM_PILEUP_MUTS_PD9849i	Pileup_MtAlpct_PD9849i
PD9849b	17	7578478	G	C	TP53	CCDS11118.1	r.642c>g	c.452C>G	p.P151R	Sub	missense	1	ONCOGENIC_BCA_GENE	ONCOGENIC	58	pS	3	3	2	3	20	3	YES	YES	TP53:p.P151R	222	88	39.6	17:7578478	117	33	28.2	17:7578478	311	134	43.1	17:7578478	231	128	55.4	17:7578478	140	36	25.7	17:7578478	118	47	39.8	17:7578478	334	119	35.6	17:7578478	346	185	53.5
PD9849b	13	110435574	C	A	IRS2	CCDS9510.1	r.3342g>u	c.2827G>T	p.A943S	Sub	missense	3	UNCERTAIN_CANCER_GENE_STATUS_IN_BCA	UNKNOWN	58	pS	3	3	2	3	20	3	YES	YES	IRS2:p.A943S	218	30	13.8	13:110435574	46	9	19.6	13:110435574	180	35	19.4	13:110435574	118	33	28	13:110435574	69	6	8.7	13:110435574	58	16	27.6	13:110435574	172	29	16.9	13:110435574	167	48	28.7