Normal	Chrom	Pos	Ref	Alt	Gene	Transcript	RNA	CDS	Protein	Type	Effect	CancerGene	Description	DRIVER_CATEGORY	Age	pCR_vs_RD	PreTxTumorSizeClinOrRad	Tumor_size_surgery(cm)	Grade	group	Ki67_biopsy	NumPosLn	ANTHRACYCLINE	TAXANE	geneRef	DEPTH_PD9853a	TUM_PILEUP_MUTS_PD9853a	Pileup_MtAlpct_PD9853a	ID.2	DEPTH_PD9853c	TUM_PILEUP_MUTS_PD9853c	Pileup_MtAlpct_PD9853c	ID.3	DEPTH_PD9853d	TUM_PILEUP_MUTS_PD9853d	Pileup_MtAlpct_PD9853d	ID.4	DEPTH_PD9853e	TUM_PILEUP_MUTS_PD9853e	Pileup_MtAlpct_PD9853e	ID.5	DEPTH_PD9853f	TUM_PILEUP_MUTS_PD9853f	Pileup_MtAlpct_PD9853f	ID.6	DEPTH_PD9853g	TUM_PILEUP_MUTS_PD9853g	Pileup_MtAlpct_PD9853g	ID.7	DEPTH_PD9853h	TUM_PILEUP_MUTS_PD9853h	Pileup_MtAlpct_PD9853h	ID.8	DEPTH_PD9853i	TUM_PILEUP_MUTS_PD9853i	Pileup_MtAlpct_PD9853i
PD9853b	1	27101443	A	G	ARID1A	CCDS285.1	r.5096a>g	c.4725A>G	p.P1575P	Sub	silent	1	SILENT	SILENT	60	pS	2.3	2.3	3	3	35	2	YES	YES	ARID1A:p.P1575P	158	75	47.5	1:27101443	160	91	56.9	1:27101443	115	84	73	1:27101443	222	150	67.6	1:27101443	206	126	61.2	1:27101443	258	155	60.1	1:27101443	252	103	40.9	1:27101443	226	138	61.1
PD9853b	1	27100961	C	T	ARID1A	CCDS285.1	r.4614c>u	c.4243C>T	p.Q1415*	Sub	nonsense	1	DAMAGING_IN_BCA_GENE	ONCOGENIC	60	pS	2.3	2.3	3	3	35	2	YES	YES	ARID1A:p.Q1415*	147	70	47.6	1:27100961	159	86	54.1	1:27100961	125	87	69.6	1:27100961	223	134	60.1	1:27100961	284	154	54.2	1:27100961	255	163	63.9	1:27100961	217	82	37.8	1:27100961	210	119	56.7
PD9853b	5	149502605	C	T	PDGFRB	CCDS4303.1	r.2653g>a	c.2183G>A	p.S728N	Sub	missense	3	UNKNOWN EFFECT IN CANCER GENE	UNKNOWN	60	pS	2.3	2.3	3	3	35	2	YES	YES	PDGFRB:p.S728N	41	9	22	5:149502605	43	0	0	5:149502605	49	0	0	5:149502605	70	0	0	5:149502605	86	0	0	5:149502605	66	0	0	5:149502605	73	0	0	5:149502605	70	0	0