X.AnalysisProc	VariantID	Normal	Chrom	Pos	Ref	Alt	Gene	Transcript	RNA	CDS	Protein	Effect	DIS_sample_PD9774b_depth	DIS_MtAll_PD9774b	DIS_MtAllPct_PD9774b	DIS_sample_PD9774c_depth	DIS_MtAll_PD9774c	DIS_MtAllPct_PD9774c	VAL_sample_PD9774b_depth	VAL_MtAll_PD9774b	VAL_MtAllPct_PD9774b	VAL_sample_PD9774c_depth	VAL_MtAll_PD9774c	VAL_MtAllPct_PD9774c	subclonal.CN	nMaj1	nMin1	frac1	nMaj2	nMin2	frac2	phase	mutation.copy.number	subclonal.fraction	no.chrs.bearing.mut	prob.cluster1	prob.cluster2	prob.cluster3	prob.cluster4	most.likely.cluster	pbinom_dis_c	pbinom_dis_b	pbinom_val_c	pbinom_val_b	VAL_LOCUS	val_status_c	current.conf.status	val.platform
1351289	1206479220	PD9774b	1	1043950	G	A	C1orf159	CCDS7.2	r.?	-	-	intronic	32	0	0	47	6	12.76595745	0	0	NA	0	0	NA	1.28043747	1	0	0.71956253	1	1	0.28043747	unphased	0.731751111	0.731751111	1	0.0025	0.9975	0	0	2	1.41E-07	1	1	1	NA	NA	NA	NA
1351289	1206479397	PD9774b	1	2473829	C	A	-	-	-	-	-	-	29	0	0	54	4	7.407407407	0	0	NA	0	0	NA	1.28043747	1	0	0.71956253	1	1	0.28043747	unphased	0.424596324	1.514049902	0.28043747	0	0.9975	0.0025	0	2	0.000161898	1	1	1	NA	NA	NA	NA
1351289	1206480271	PD9774b	1	4613680	T	A	-	-	-	-	-	-	19	0	0	58	7	12.06896552	0	0	NA	0	0	NA	1.28043747	1	0	0.71956253	1	1	0.28043747	unphased	0.691799183	0.691799183	1	0.00375	0.99625	0	0	2	1.88E-08	1	1	1	NA	NA	NA	NA
1351289	1206480292	PD9774b	1	4859927	G	A	-	-	-	-	-	-	37	0	0	57	6	10.52631579	0	0	NA	0	0	NA	1.28043747	1	0	0.71956253	1	1	0.28043747	unphased	0.603373724	0.603373724	1	0.005	0.995	0	0	2	4.56E-07	1	1	1	NA	NA	NA	NA
1351289	1206480329	PD9774b	1	5326320	T	A	-	-	-	-	-	-	27	0	0	51	11	21.56862745	0	0	NA	0	0	NA	1.28043747	1	0	0.71956253	1	1	0.28043747	unphased	1.23632459	1.23632459	1	0	1	0	0	2	1.94E-15	1	1	1	NA	NA	NA	NA
1351289	1206482123	PD9774b	1	18236049	C	A	-	-	-	-	-	-	34	0	0	58	4	6.896551724	0	0	NA	0	0	NA	1.828511191	1	0	0.171488809	1	1	0.828511191	unphased	0.433112007	0.522759392	0.828511191	0.00625	0.99375	0	0	2	0.000213772	1	1	1	NA	NA	NA	NA
1351289	1206482308	PD9774b	1	20450238	G	A	PLA2G2D	CCDS203.1	r.?	-	-	upstream	44	0	0	47	6	12.76595745	0	0	NA	0	0	NA	1.828511191	1	0	0.171488809	1	1	0.828511191	unphased	0.80171797	0.967661002	0.828511191	0.0025	0.99625	0.00125	0	2	1.41E-07	1	1	1	NA	NA	NA	NA
1351289	1206482334	PD9774b	1	20854871	T	A	-	-	-	-	-	-	29	0	0	38	6	15.78947368	0	0	NA	0	0	NA	1.828511191	1	0	0.171488809	1	1	0.828511191	unphased	0.991598541	0.991598541	1	0.00125	0.99875	0	0	2	3.76E-08	1	1	1	NA	NA	NA	NA
1351289	1206482630	PD9774b	1	23688282	G	A	ZNF436	CCDS233.1	r.1730c>u	c.?	p.?	3'UTR variant	45	0	0	46	8	17.39130435	0	0	NA	0	0	NA	1.828511191	1	0	0.171488809	1	1	0.828511191	unphased	1.092195495	1.092195495	1	0.0025	0.99625	0.00125	0	2	8.61E-11	1	1	1	NA	NA	NA	NA
1351289	1206482717	PD9774b	1	24360547	C	A	-	-	-	-	-	-	24	0	0	52	5	9.615384615	0	0	NA	0	0	NA	1.828511191	1	0	0.171488809	1	1	0.828511191	unphased	0.603858086	0.728847229	0.828511191	0.0025	0.9975	0	0	2	6.68E-06	1	1	1	NA	NA	NA	NA
1351289	1206482722	PD9774b	1	24406165	G	A	MYOM3	CCDS41281.1	r.?	-	-	intronic	34	0	0	57	8	14.03508772	0	0	NA	0	0	NA	1.828511191	1	0	0.171488809	1	1	0.828511191	unphased	0.881420926	1.063861218	0.828511191	0	1	0	0	2	5.19E-10	1	1	1	NA	NA	NA	NA
1351289	1206482744	PD9774b	1	24656055	C	A	GRHL3	CCDS44088.1	r.?	-	-	intronic	28	0	0	40	7	17.5	0	0	NA	0	0	NA	1.828511191	1	0	0.171488809	1	1	0.828511191	unphased	1.099021717	1.099021717	1	0.00125	0.99875	0	0	2	1.26E-09	1	1	1	NA	NA	NA	NA
1351289	1206482997	PD9774b	1	27657340	G	A	TMEM222	CCDS297.2	r.?	-	-	intronic	32	0	0	44	6	13.63636364	1	0	0	0	0	NA	1.828511191	1	0	0.171488809	1	1	0.828511191	unphased	0.856380558	1.033637888	0.828511191	0	1	0	0	2	9.37E-08	1	1	1	NA	NA	NA	NA
1351289	1206483044	PD9774b	1	28340858	G	A	EYA3	CCDS316.1	r.?	-	-	intronic	34	0	0	50	8	16	0	0	NA	0	0	NA	1.828511191	1	0	0.171488809	1	1	0.828511191	unphased	1.004819855	1.004819855	1	0	0.99875	0.00125	0	2	1.74E-10	1	1	1	NA	NA	NA	NA
1351289	1206483102	PD9774b	1	28821639	G	A	PHACTR4	CCDS41293.1	r.?	-	-	intronic	30	0	0	43	5	11.62790698	0	0	NA	0	0	NA	1.828511191	1	0	0.171488809	1	1	0.828511191	unphased	0.730246988	0.881396649	0.828511191	0	0.99875	0.00125	0	2	2.57E-06	1	1	1	NA	NA	NA	NA
1351289	1206483273	PD9774b	1	30754800	C	A	-	-	-	-	-	-	32	0	0	51	10	19.60784314	0	0	NA	0	0	NA	1.828511191	1	0	0.171488809	1	1	0.828511191	unphased	1.231396881	1.231396881	1	0	0.9975	0.0025	0	2	1.04E-13	1	1	1	NA	NA	NA	NA
1351289	1206483361	PD9774b	1	31748958	T	A	SNRNP40	CCDS340.1	r.?	-	-	intronic	41	0	0	46	5	10.86956522	0	0	NA	0	0	NA	1.828511191	1	0	0.171488809	1	1	0.828511191	unphased	0.682622184	0.823914259	0.828511191	0.0025	0.9975	0	0	2	3.61E-06	1	1	1	NA	NA	NA	NA
1351289	1206483430	PD9774b	1	32227509	C	A	BAI2	CCDS346.2	r.?	-	-	intronic	29	0	0	32	7	21.875	0	0	NA	0	0	NA	1.828511191	1	0	0.171488809	1	1	0.828511191	unphased	1.373777146	1.373777146	1	0	0.99375	0.00625	0	2	2.36E-10	1	1	1	NA	NA	NA	NA
1351289	1206483669	PD9774b	1	35565611	C	A	ZMYM1	CCDS41302.1	r.?	-	-	intronic	32	0	0	52	8	15.38461538	0	0	NA	0	0	NA	1.828511191	1	0	0.171488809	1	1	0.828511191	unphased	0.966172938	0.966172938	1	0	1	0	0	2	2.42E-10	1	1	1	NA	NA	NA	NA
1351289	1206483831	PD9774b	1	37074184	G	A	-	-	-	-	-	-	33	0	0	36	6	16.66666667	0	0	NA	0	0	NA	1.828511191	1	0	0.171488809	1	1	0.828511191	unphased	1.046687349	1.046687349	1	0.00125	0.995	0.00375	0	2	2.68E-08	1	1	1	NA	NA	NA	NA
1351289	1206483865	PD9774b	1	37756157	G	A	-	-	-	-	-	-	33	0	0	56	10	17.85714286	0	0	NA	0	0	NA	1.828511191	1	0	0.171488809	1	1	0.828511191	unphased	1.121450731	1.121450731	1	0	0.99875	0.00125	0	2	2.82E-13	1	1	1	NA	NA	NA	NA
1351289	1206484025	PD9774b	1	39594098	G	A	MACF1	CCDS435.1	r.?	-	-	intronic	42	0	0	43	6	13.95348837	0	0	NA	0	0	NA	1.828511191	1	0	0.171488809	1	1	0.828511191	unphased	0.876296385	1.057675979	0.828511191	0	0.99875	0.00125	0	2	8.13E-08	1	1	1	NA	NA	NA	NA
1351289	1206484119	PD9774b	1	40593327	C	A	-	-	-	-	-	-	19	0	0	45	8	17.77777778	0	0	NA	0	0	NA	1.828511191	1	0	0.171488809	1	1	0.828511191	unphased	1.116466506	1.116466506	1	0.00125	0.99625	0.0025	0	2	7.14E-11	1	1	1	NA	NA	NA	NA
1351289	1206484213	PD9774b	1	41739332	G	A	-	-	-	-	-	-	45	0	0	55	4	7.272727273	0	0	NA	0	0	NA	1.828511191	1	0	0.171488809	1	1	0.828511191	unphased	0.456736298	0.55127354	0.828511191	0.0075	0.9925	0	0	2	0.000173903	1	1	1	NA	NA	NA	NA
1351289	1206484238	PD9774b	1	42050386	T	A	HIVEP3	CCDS463.1	r.969a>u	c.83A>T	p.Q28L	missense	30	0	0	47	7	14.89361702	122	0	0	54	3	5.555555556	1.828511191	1	0	0.171488809	1	1	0.828511191	unphased	0.935337631	0.935337631	1	0	0.99875	0.00125	0	2	4.12E-09	1	0.00256299	1	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206484264	PD9774b	1	42339754	G	A	HIVEP3	CCDS44124.1	r.?	-	-	intronic	35	0	0	54	14	25.92592593	0	0	NA	0	0	NA	1.828511191	1	0	0.171488809	1	1	0.828511191	unphased	1.628180321	1.628180321	1	0	0.98	0.02	0	2	1.64E-20	1	1	1	NA	NA	NA	NA
1351289	1206484315	PD9774b	1	42854646	G	A	RIMKLA	CCDS466.2	r.?	-	-	intronic	34	0	0	56	12	21.42857143	0	0	NA	0	0	NA	1.828511191	1	0	0.171488809	1	1	0.828511191	unphased	1.345740877	1.345740877	1	0	0.995	0.005	0	2	1.11E-16	1	1	1	NA	NA	NA	NA
1351289	1206484775	PD9774b	1	49975075	T	A	AGBL4	CCDS44137.1	r.?	-	-	intronic	37	0	0	50	5	10	0	0	NA	0	0	NA	1.828511191	1	0	0.171488809	1	1	0.828511191	unphased	0.628012409	0.758001118	0.828511191	0.00625	0.99375	0	0	2	5.49E-06	1	1	1	NA	NA	NA	NA
1351289	1206484778	PD9774b	1	50075182	G	A	AGBL4	CCDS44137.1	r.?	-	-	intronic	37	0	0	44	6	13.63636364	0	0	NA	0	0	NA	1.828511191	1	0	0.171488809	1	1	0.828511191	unphased	0.856380558	1.033637888	0.828511191	0	1	0	0	2	9.37E-08	1	1	1	NA	NA	NA	NA
1351289	1206485059	PD9774b	1	53810266	G	A	-	-	-	-	-	-	23	0	0	39	7	17.94871795	0	0	NA	0	0	NA	1.828511191	1	0	0.171488809	1	1	0.828511191	unphased	1.127201761	1.127201761	1	0	0.9975	0.0025	0	2	1.04E-09	1	1	1	NA	NA	NA	NA
1351289	1206485066	PD9774b	1	53929768	C	A	DMRTB1	CCDS581.1	r.?	-	-	intronic	30	0	0	49	4	8.163265306	0	0	NA	0	0	NA	1.828511191	1	0	0.171488809	1	1	0.828511191	unphased	0.512663191	0.618776423	0.828511191	0.005	0.995	0	0	2	0.000110643	1	1	1	NA	NA	NA	NA
1351289	1206485258	PD9774b	1	57075112	G	A	-	-	-	-	-	-	27	0	0	43	8	18.60465116	0	0	NA	0	0	NA	1.591961208	1	0	0.408038792	1	1	0.591961208	unphased	1.124385881	1.124385881	1	0	0.99875	0.00125	0	2	4.85E-11	1	1	1	NA	NA	NA	NA
1351289	1206485413	PD9774b	1	59635190	C	A	-	-	-	-	-	-	31	0	0	63	10	15.87301587	0	0	NA	0	0	NA	1.591961208	1	0	0.408038792	1	1	0.591961208	unphased	0.959297478	0.959297478	1	0.00125	0.99875	0	0	2	9.81E-13	1	1	1	NA	NA	NA	NA
1351289	1206485731	PD9774b	1	63847835	T	A	ALG6	CCDS30735.1	r.?	-	-	intronic	43	0	0	48	6	12.5	0	0	NA	0	0	NA	1.591961208	1	0	0.408038792	1	1	0.591961208	unphased	0.755446764	0.755446764	1	0.0025	0.9975	0	0	2	1.60E-07	1	1	1	NA	NA	NA	NA
1351289	1206485747	PD9774b	1	64119158	G	A	PGM1	CCDS625.1	r.?	-	-	intronic	26	0	0	48	5	10.41666667	0	0	NA	0	0	NA	1.591961208	1	0	0.408038792	1	1	0.591961208	unphased	0.62953897	1.063480109	0.591961208	0	0.99875	0.00125	0	2	4.47E-06	1	1	1	NA	NA	NA	NA
1351289	1206485788	PD9774b	1	64710699	G	A	UBE2U	CCDS627.1	r.?	-	-	downstream	34	0	0	47	10	21.27659574	0	0	NA	0	0	NA	1.591961208	1	0	0.408038792	1	1	0.591961208	unphased	1.285866832	1.285866832	1	0.00125	0.99625	0.0025	0	2	4.27E-14	1	1	1	NA	NA	NA	NA
1351289	1206485913	PD9774b	1	66417533	C	A	PDE4B	CCDS632.1	r.?	-	-	intronic	37	0	0	61	12	19.67213115	0	0	NA	0	0	NA	1.591961208	1	0	0.408038792	1	1	0.591961208	unphased	1.188899825	1.188899825	1	0	1	0	0	2	3.39E-16	1	1	1	NA	NA	NA	NA
1351289	1206485972	PD9774b	1	67244546	C	A	TCTEX1D1	CCDS633.1	r.?	-	-	downstream	27	0	0	56	4	7.142857143	0	0	NA	0	0	NA	1.591961208	1	0	0.408038792	1	1	0.591961208	unphased	0.431683865	0.729243503	0.591961208	0.0025	0.9975	0	0	2	0.000186538	1	1	1	NA	NA	NA	NA
1351289	1206486007	PD9774b	1	67687858	G	A	IL23R	CCDS637.1	r.?	-	-	intronic	26	0	0	31	5	16.12903226	0	0	NA	0	0	NA	1.591961208	1	0	0.408038792	1	1	0.591961208	unphased	0.974770018	0.974770018	1	0	1	0	0	2	4.76E-07	1	1	1	NA	NA	NA	NA
1351289	1206486091	PD9774b	1	68814201	C	A	-	-	-	-	-	-	41	0	0	52	10	19.23076923	0	0	NA	0	0	NA	1.591961208	1	0	0.408038792	1	1	0.591961208	unphased	1.162225791	1.162225791	1	0	0.99875	0.00125	0	2	1.28E-13	1	1	1	NA	NA	NA	NA
1351289	1206486169	PD9774b	1	70110326	G	A	LRRC7	ENST00000310961	r.?	-	-	intronic	41	0	0	44	7	15.90909091	0	0	NA	0	0	NA	1.591961208	1	0	0.408038792	1	1	0.591961208	unphased	0.9614777	0.9614777	1	0	0.99875	0.00125	0	2	2.55E-09	1	1	1	NA	NA	NA	NA
1351289	1206486212	PD9774b	1	70811030	T	A	ANKRD13C	CCDS648.2	r.?	-	-	intronic	33	0	0	44	7	15.90909091	0	0	NA	0	0	NA	1.591961208	1	0	0.408038792	1	1	0.591961208	unphased	0.9614777	0.9614777	1	0.00125	0.99875	0	0	2	2.55E-09	1	1	1	NA	NA	NA	NA
1351289	1206486453	PD9774b	1	73622028	G	A	-	-	-	-	-	-	35	0	0	61	9	14.75409836	0	0	NA	0	0	NA	1.591961208	1	0	0.408038792	1	1	0.591961208	unphased	0.891674869	0.891674869	1	0.00125	0.99875	0	0	2	2.68E-11	1	1	1	NA	NA	NA	NA
1351289	1206486473	PD9774b	1	73771229	T	A	-	-	-	-	-	-	39	0	0	68	4	5.882352941	0	0	NA	0	0	NA	1.591961208	1	0	0.408038792	1	1	0.591961208	unphased	0.355504359	0.600553473	0.591961208	0.0025	0.9975	0	0	2	0.000394372	1	1	1	NA	NA	NA	NA
1351289	1206486533	PD9774b	1	75040248	T	A	C1orf173	CCDS30755.1	r.?	-	-	intronic	38	0	0	48	5	10.41666667	250	0	0	270	16	5.925925926	1.591961208	1	0	0.408038792	1	1	0.591961208	unphased	0.62953897	1.063480109	0.591961208	0.00125	0.9975	0.00125	0	2	4.47E-06	1	1.12E-12	1	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206486574	PD9774b	1	75598480	T	A	LHX8	CCDS30756.1	r.?	-	-	intronic	20	0	0	38	4	10.52631579	0	0	NA	0	0	NA	1.591961208	1	0	0.408038792	1	1	0.591961208	unphased	0.636165696	1.074674636	0.591961208	0.00125	0.9975	0.00125	0	2	4.03E-05	1	1	1	NA	NA	NA	NA
1351289	1206486611	PD9774b	1	76036342	C	A	SLC44A5	CCDS667.1	r.?	-	-	intronic	20	0	0	61	12	19.67213115	0	0	NA	0	0	NA	1.591961208	1	0	0.408038792	1	1	0.591961208	unphased	1.188899825	1.188899825	1	0	0.9975	0.0025	0	2	3.39E-16	1	1	1	NA	NA	NA	NA
1351289	1206486710	PD9774b	1	77621894	C	A	PIGK	CCDS674.1	r.?	-	-	intronic	45	0	0	58	6	10.34482759	0	0	NA	0	0	NA	1.591961208	1	0	0.408038792	1	1	0.591961208	unphased	0.625197322	1.056145763	0.591961208	0	1	0	0	2	5.06E-07	1	1	1	NA	NA	NA	NA
1351289	1206486866	PD9774b	1	79733878	C	A	-	-	-	-	-	-	39	0	0	51	11	21.56862745	0	0	NA	0	0	NA	1.591961208	1	0	0.408038792	1	1	0.591961208	unphased	1.303515985	1.303515985	1	0	0.99875	0.00125	0	2	1.94E-15	1	1	1	NA	NA	NA	NA
1351289	1206487142	PD9774b	1	82864571	T	A	-	-	-	-	-	-	35	0	0	54	5	9.259259259	0	0	NA	0	0	NA	1.591961208	1	0	0.408038792	1	1	0.591961208	unphased	0.559590195	0.945315652	0.591961208	0	1	0	0	2	8.06E-06	1	1	1	NA	NA	NA	NA
1351289	1206487280	PD9774b	1	84392079	C	A	TTLL7	CCDS690.2	r.?	-	-	intronic	27	0	0	56	8	14.28571429	0	0	NA	0	0	NA	1.591961208	1	0	0.408038792	1	1	0.591961208	unphased	0.86336773	0.86336773	1	0.00125	0.99875	0	0	2	4.48E-10	1	1	1	NA	NA	NA	NA
1351289	1206487287	PD9774b	1	84489728	C	A	-	-	-	-	-	-	33	0	0	65	6	9.230769231	0	0	NA	0	0	NA	1.591961208	1	0	0.408038792	1	1	0.591961208	unphased	0.557868379	0.942406989	0.591961208	0.00625	0.9925	0.00125	0	2	1.00E-06	1	1	1	NA	NA	NA	NA
1351289	1206487336	PD9774b	1	84875868	T	A	DNASE2B	CCDS44167.1	r.?	-	-	intronic	38	0	0	45	4	8.888888889	0	0	NA	0	0	NA	1.591961208	1	0	0.408038792	1	1	0.591961208	unphased	0.537206588	0.907503026	0.591961208	0	0.99875	0.00125	0	2	7.91E-05	1	1	1	NA	NA	NA	NA
1351289	1206487519	PD9774b	1	87061639	C	A	-	-	-	-	-	-	40	0	0	54	7	12.96296296	0	0	NA	0	0	NA	1.591961208	1	0	0.408038792	1	1	0.591961208	unphased	0.783426274	0.783426274	1	0.005	0.995	0	0	2	1.13E-08	1	1	1	NA	NA	NA	NA
1351289	1206487588	PD9774b	1	88076697	G	A	-	-	-	-	-	-	26	0	0	40	6	15	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.667741935	0.667741935	1	0.0025	0.9975	0	0	2	5.18E-08	1	1	1	NA	NA	NA	NA
1351289	1206487617	PD9774b	1	88509325	C	A	-	-	-	-	-	-	43	0	0	58	7	12.06896552	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.537263626	0.537263626	1	0.00875	0.99125	0	0	2	1.88E-08	1	1	1	NA	NA	NA	NA
1351289	1206487638	PD9774b	1	88867293	T	A	-	-	-	-	-	-	33	0	0	55	5	9.090909091	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.404692082	0.404692082	1	0.0325	0.9675	0	0	2	8.83E-06	1	1	1	NA	NA	NA	NA
1351289	1206488119	PD9774b	1	95531920	C	A	ALG14	CCDS752.1	r.?	-	-	intronic	26	0	0	30	5	16.66666667	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.741935484	0.741935484	1	0.005	0.995	0	0	2	4.01E-07	1	1	1	NA	NA	NA	NA
1351289	1206488408	PD9774b	1	99671790	T	A	-	-	-	-	-	-	41	0	0	47	5	10.63829787	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.473575841	0.473575841	1	0.0175	0.9825	0	0	2	4.02E-06	1	1	1	NA	NA	NA	NA
1351289	1206488636	PD9774b	1	102407365	G	A	OLFM3	CCDS30781.1	r.?	-	-	intronic	32	0	0	48	6	12.5	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.556451613	0.556451613	1	0.005	0.995	0	0	2	1.60E-07	1	1	1	NA	NA	NA	NA
1351289	1206488993	PD9774b	1	106721890	T	A	-	-	-	-	-	-	29	0	0	46	6	13.04347826	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.580645161	0.580645161	1	0.0075	0.9925	0	0	2	1.23E-07	1	1	1	NA	NA	NA	NA
1351289	1206489357	PD9774b	1	111783929	G	A	CHI3L2	CCDS30802.1	r.?	-	-	intronic	26	0	0	48	5	10.41666667	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.463709677	0.463709677	1	0.01125	0.98875	0	0	2	4.47E-06	1	1	1	NA	NA	NA	NA
1351289	1206489459	PD9774b	1	112940222	C	A	CTTNBP2NL	CCDS845.1	r.?	-	-	intronic	27	0	0	44	11	25	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	1.112903226	1.112903226	1	0.00125	0.99875	0	0	2	3.22E-16	1	1	1	NA	NA	NA	NA
1351289	1206489607	PD9774b	1	114599966	C	A	-	-	-	-	-	-	36	0	0	59	6	10.16949153	0	0	NA	0	0	NA	1.624914468	1	0	0.375085532	1	1	0.624914468	unphased	0.617951936	0.988858424	0.624914468	0.0025	0.9975	0	0	2	5.61E-07	1	1	1	NA	NA	NA	NA
1351289	1206489728	PD9774b	1	116507794	T	A	-	-	-	-	-	-	35	0	0	46	4	8.695652174	0	0	NA	0	0	NA	1.624914468	1	0	0.375085532	1	1	0.624914468	unphased	0.528393684	0.845545609	0.624914468	0.00375	0.99625	0	0	2	8.62E-05	1	1	1	NA	NA	NA	NA
1351289	1206489743	PD9774b	1	116694107	C	A	-	-	-	-	-	-	23	0	0	49	4	8.163265306	0	0	NA	0	0	NA	1.624914468	1	0	0.375085532	1	1	0.624914468	unphased	0.496043051	0.79377751	0.624914468	0.0025	0.9975	0	0	2	0.000110643	1	1	1	NA	NA	NA	NA
1351289	1206489970	PD9774b	1	119175342	T	A	-	-	-	-	-	-	35	0	0	57	8	14.03508772	0	0	NA	0	0	NA	1.624914468	1	0	0.375085532	1	1	0.624914468	unphased	0.852845947	0.852845947	1	0.00125	0.99875	0	0	2	5.19E-10	1	1	1	NA	NA	NA	NA
1351289	1206502861	PD9774b	1	148931124	C	A	-	-	-	-	-	-	85	0	0	47	6	12.76595745	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.823610158	0.823610158	1	0.00125	0.99875	0	0	2	1.41E-07	1	1	1	NA	NA	NA	NA
1351289	1206503479	PD9774b	1	149239139	T	A	-	-	-	-	-	-	64	0	0	96	5	5.208333333	2	0	0	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.336021505	0.336021505	1	0.055	0.945	0	0	2	0.000130906	1	1	1	NA	NA	NA	NA
1351289	1206503768	PD9774b	1	150560785	T	A	AL356356.4	ENST00000500237	r.?	-	-	upstream	27	0	0	40	7	17.5	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.129032258	1.129032258	1	0.00125	0.99875	0	0	2	1.26E-09	1	1	1	NA	NA	NA	NA
1351289	1206503895	PD9774b	1	151667824	G	A	SNX27	CCDS1001.1	r.3454g>a	c.?	p.?	3'UTR variant	28	0	0	54	13	24.07407407	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.553166069	1.553166069	1	0	0.98375	0.01625	0	2	1.12E-18	1	1	1	NA	NA	NA	NA
1351289	1206503911	PD9774b	1	151814136	C	A	THEM5	CCDS1005.1	r.?	-	-	downstream	35	0	0	66	10	15.15151515	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.977517107	0.977517107	1	0	1	0	0	2	1.60E-12	1	1	1	NA	NA	NA	NA
1351289	1206503931	PD9774b	1	152046463	T	A	-	-	-	-	-	-	31	0	0	64	13	20.3125	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.310483871	1.310483871	1	0	0.99625	0.00375	0	2	1.26E-17	1	1	1	NA	NA	NA	NA
1351289	1206503966	PD9774b	1	152397013	C	A	-	-	-	-	-	-	41	0	0	62	11	17.74193548	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.144640999	1.144640999	1	0	1	0	0	2	1.96E-14	1	1	1	NA	NA	NA	NA
1351289	1206504033	PD9774b	1	153006618	T	A	SPRR1B	CCDS30863.1	r.?	-	-	downstream	30	0	0	48	10	20.83333333	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.344086022	1.344086022	1	0	1	0	0	2	5.37E-14	1	1	1	NA	NA	NA	NA
1351289	1206504044	PD9774b	1	153196977	G	A	-	-	-	-	-	-	39	0	0	61	6	9.836065574	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.634584876	0.634584876	1	0.0075	0.9925	0	0	2	6.85E-07	1	1	1	NA	NA	NA	NA
1351289	1206504048	PD9774b	1	153274499	G	A	PGLYRP3	CCDS1035.1	r.?	-	-	intronic	33	0	0	59	7	11.86440678	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.765445599	0.765445599	1	0.00375	0.995	0.00125	0	2	2.12E-08	1	1	1	NA	NA	NA	NA
1351289	1206504387	PD9774b	1	156854404	G	A	NTRK1	CCDS30891.1	r.?	-	-	downstream	34	0	0	46	6	13.04347826	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.841514727	0.841514727	1	0.00375	0.99625	0	0	2	1.23E-07	1	1	1	NA	NA	NA	NA
1351289	1206504607	PD9774b	1	159834734	C	A	VSIG8	CCDS30913.1	r.?	-	-	upstream	29	0	0	50	9	18	0	0	NA	0	0	NA	1.428392334	1	0	0.571607666	1	1	0.428392334	unphased	1.058400943	1.058400943	1	0	1	0	0	2	4.07E-12	1	1	1	NA	NA	NA	NA
1351289	1206504630	PD9774b	1	160024512	G	A	KCNJ10	CCDS1193.1	r.?	-	-	intronic	35	0	0	54	9	16.66666667	0	0	NA	0	0	NA	1.428392334	1	0	0.571607666	1	1	0.428392334	unphased	0.980000873	0.980000873	1	0	1	0	0	2	8.48E-12	1	1	1	NA	NA	NA	NA
1351289	1206504687	PD9774b	1	160644353	G	A	CD48	CCDS1208.1	r.?	-	-	downstream	24	0	0	55	5	9.090909091	0	0	NA	1	0	0	1.428392334	1	0	0.571607666	1	1	0.428392334	unphased	0.534545931	1.247795277	0.428392334	0	0.99875	0.00125	0	2	8.83E-06	1	1	1	NA	NA	NA	NA
1351289	1206504727	PD9774b	1	160810192	C	A	CD244	CCDS1210.1	r.?	-	-	intronic	28	0	0	48	11	22.91666667	0	0	NA	0	0	NA	1.428392334	1	0	0.571607666	1	1	0.428392334	unphased	1.3475012	1.3475012	1	0	0.995	0.005	0	2	9.31E-16	1	1	1	NA	NA	NA	NA
1351289	1206504868	PD9774b	1	162345223	G	A	NOS1AP	CCDS1237.1	r.?	-	-	downstream	32	0	0	45	5	11.11111111	0	0	NA	0	0	NA	1.428392334	1	0	0.571607666	1	1	0.428392334	unphased	0.653333915	0.653333915	1	0.00625	0.99375	0	0	2	3.23E-06	1	1	1	NA	NA	NA	NA
1351289	1206504886	PD9774b	1	162464291	C	A	UHMK1	CCDS1239.1	r.?	-	-	upstream	29	0	0	50	5	10	0	0	NA	0	0	NA	1.428392334	1	0	0.571607666	1	1	0.428392334	unphased	0.588000524	1.372574805	0.428392334	0.00125	0.995	0.00375	0	2	5.49E-06	1	1	1	NA	NA	NA	NA
1351289	1206505166	PD9774b	1	166165337	C	A	-	-	-	-	-	-	44	0	0	62	12	19.35483871	0	0	NA	0	0	NA	1.428392334	1	0	0.571607666	1	1	0.428392334	unphased	1.13806553	1.13806553	1	0.0025	0.9975	0	0	2	4.19E-16	1	1	1	NA	NA	NA	NA
1351289	1206505224	PD9774b	1	167022004	G	A	GPA33	CCDS1258.1	r.?	-	-	downstream	49	0	0	50	13	26	0	0	NA	0	0	NA	1.428392334	1	0	0.571607666	1	1	0.428392334	unphased	1.528801362	1.528801362	1	0	0.98625	0.01375	0	2	3.65E-19	1	1	1	NA	NA	NA	NA
1351289	1206505589	PD9774b	1	171841795	T	A	DNM3	CCDS44276.1	r.?	-	-	intronic	26	0	0	53	7	13.20754717	0	0	NA	0	0	NA	1.57042276	1	0	0.42957724	1	1	0.57042276	unphased	0.795363201	0.795363201	1	0	1	0	0	2	9.85E-09	1	1	1	NA	NA	NA	NA
1351289	1206505745	PD9774b	1	174214063	T	A	RABGAP1L	CCDS1314.1	r.?	-	-	intronic	29	0	0	41	3	7.317073171	0	0	NA	0	0	NA	1.57042276	1	0	0.42957724	1	1	0.57042276	unphased	0.440636756	0.772474008	0.57042276	0.0025	0.9975	0	0	2	0.001155993	1	1	1	NA	NA	NA	NA
1351289	1206505901	PD9774b	1	176735210	C	A	PAPPA2	CCDS41438.1	r.?	-	-	intronic	33	0	0	52	10	19.23076923	0	0	NA	0	0	NA	1.57042276	1	0	0.42957724	1	1	0.57042276	unphased	1.158083781	1.158083781	1	0	0.9975	0.0025	0	2	1.28E-13	1	1	1	NA	NA	NA	NA
1351289	1206506114	PD9774b	1	179503263	T	A	C1orf125	CCDS30948.1	r.?	-	-	intronic	44	0	0	49	8	16.32653061	0	0	NA	0	0	NA	1.57042276	1	0	0.42957724	1	1	0.57042276	unphased	0.983189496	0.983189496	1	0.00125	0.99875	0	0	2	1.47E-10	1	1	1	NA	NA	NA	NA
1351289	1206506212	PD9774b	1	180486891	C	A	-	-	-	-	-	-	31	0	0	59	8	13.55932203	0	0	NA	0	0	NA	1.57042276	1	0	0.42957724	1	1	0.57042276	unphased	0.816547209	0.816547209	1	0.00125	0.99875	0	0	2	6.90E-10	1	1	1	NA	NA	NA	NA
1351289	1206506344	PD9774b	1	182693729	G	A	-	-	-	-	-	-	50	0	0	39	8	20.51282051	0	0	NA	0	0	NA	1.57042276	1	0	0.42957724	1	1	0.57042276	unphased	1.235289367	1.235289367	1	0.00125	0.99375	0.005	0	2	2.09E-11	1	1	1	NA	NA	NA	NA
1351289	1206506349	PD9774b	1	182784238	C	A	NPL	CCDS1350.1	r.?	-	-	intronic	28	0	0	62	4	6.451612903	0	0	NA	0	0	NA	1.57042276	1	0	0.42957724	1	1	0.57042276	unphased	0.38851843	0.681106115	0.57042276	0.00375	0.99625	0	0	2	0.000276647	1	1	1	NA	NA	NA	NA
1351289	1206506478	PD9774b	1	184220370	T	A	-	-	-	-	-	-	35	0	0	57	4	7.01754386	0	0	NA	0	0	NA	1.57042276	1	0	0.42957724	1	1	0.57042276	unphased	0.422598994	0.740852265	0.57042276	0.00125	0.9975	0.00125	0	2	0.000199821	1	1	1	NA	NA	NA	NA
1351289	1206506695	PD9774b	1	187471108	C	A	-	-	-	-	-	-	33	0	0	53	14	26.41509434	0	0	NA	0	0	NA	1.57042276	1	0	0.42957724	1	1	0.57042276	unphased	1.590726402	1.590726402	1	0	0.985	0.015	0	2	1.22E-20	1	1	1	NA	NA	NA	NA
1351289	1206506808	PD9774b	1	188357458	T	A	-	-	-	-	-	-	37	0	0	47	4	8.510638298	0	0	NA	0	0	NA	1.57042276	1	0	0.42957724	1	1	0.57042276	unphased	0.512513673	0.898480407	0.57042276	0.00375	0.995	0.00125	0	2	9.39E-05	1	1	1	NA	NA	NA	NA
1351289	1206506929	PD9774b	1	190356583	G	A	FAM5C	CCDS1373.1	r.?	-	-	intronic	37	0	0	59	15	25.42372881	0	0	NA	0	0	NA	1.57042276	1	0	0.42957724	1	1	0.57042276	unphased	1.531026016	1.531026016	1	0	0.985	0.015	0	2	9.90E-22	1	1	1	NA	NA	NA	NA
1351289	1206506955	PD9774b	1	190640991	C	A	-	-	-	-	-	-	38	0	0	56	7	12.5	0	0	NA	0	0	NA	1.57042276	1	0	0.42957724	1	1	0.57042276	unphased	0.752754458	0.752754458	1	0.00125	0.99875	0	0	2	1.46E-08	1	1	1	NA	NA	NA	NA
1351289	1206506967	PD9774b	1	190963435	T	A	-	-	-	-	-	-	33	0	0	50	7	14	0	0	NA	0	0	NA	1.57042276	1	0	0.42957724	1	1	0.57042276	unphased	0.843084993	0.843084993	1	0.00375	0.99625	0	0	2	6.46E-09	1	1	1	NA	NA	NA	NA
1351289	1206507042	PD9774b	1	192053647	G	A	-	-	-	-	-	-	36	0	0	52	5	9.615384615	0	0	NA	0	0	NA	1.57042276	1	0	0.42957724	1	1	0.57042276	unphased	0.579041891	1.015110075	0.57042276	0.0025	0.9975	0	0	2	6.68E-06	1	1	1	NA	NA	NA	NA
1351289	1206507142	PD9774b	1	193522523	G	A	-	-	-	-	-	-	42	0	0	60	7	11.66666667	0	0	NA	0	0	NA	1.57042276	1	0	0.42957724	1	1	0.57042276	unphased	0.702570827	1.231666891	0.57042276	0	1	0	0	2	2.39E-08	1	1	1	NA	NA	NA	NA
1351289	1206507238	PD9774b	1	194595731	C	A	-	-	-	-	-	-	30	0	0	49	8	16.32653061	0	0	NA	0	0	NA	1.57042276	1	0	0.42957724	1	1	0.57042276	unphased	0.983189496	0.983189496	1	0.00125	0.99875	0	0	2	1.47E-10	1	1	1	NA	NA	NA	NA
1351289	1206507317	PD9774b	1	195482551	G	A	-	-	-	-	-	-	37	0	0	44	5	11.36363636	0	0	NA	0	0	NA	1.57042276	1	0	0.42957724	1	1	0.57042276	unphased	0.684322234	1.199675543	0.57042276	0	1	0	0	2	2.88E-06	1	1	1	NA	NA	NA	NA
1351289	1206507342	PD9774b	1	195744080	T	A	-	-	-	-	-	-	31	0	0	63	6	9.523809524	1	0	0	0	0	NA	1.57042276	1	0	0.42957724	1	1	0.57042276	unphased	0.573527206	1.00544236	0.57042276	0	0.99875	0.00125	0	2	8.32E-07	1	1	1	NA	NA	NA	NA
1351289	1206507366	PD9774b	1	196052560	T	A	-	-	-	-	-	-	36	0	0	57	6	10.52631579	0	0	NA	0	0	NA	1.57042276	1	0	0.42957724	1	1	0.57042276	unphased	0.633898491	1.111278398	0.57042276	0.00125	0.99875	0	0	2	4.56E-07	1	1	1	NA	NA	NA	NA
1351289	1206507431	PD9774b	1	196924501	T	A	CFHR2	CCDS30959.1	r.?	-	-	intronic	38	0	0	40	6	15	0	0	NA	0	0	NA	1.57042276	1	0	0.42957724	1	1	0.57042276	unphased	0.903305349	0.903305349	1	0.00125	0.99875	0	0	2	5.18E-08	1	1	1	NA	NA	NA	NA
1351289	1206507519	PD9774b	1	197926983	G	A	-	-	-	-	-	-	31	0	0	49	5	10.20408163	0	0	NA	0	0	NA	1.57042276	1	0	0.42957724	1	1	0.57042276	unphased	0.614493435	1.077259671	0.57042276	0.00125	0.9975	0.00125	0	2	4.96E-06	1	1	1	NA	NA	NA	NA
1351289	1206507610	PD9774b	1	198974483	C	A	-	-	-	-	-	-	32	0	0	40	6	15	0	0	NA	0	0	NA	1.57042276	1	0	0.42957724	1	1	0.57042276	unphased	0.903305349	0.903305349	1	0.00375	0.99625	0	0	2	5.18E-08	1	1	1	NA	NA	NA	NA
1351289	1206507667	PD9774b	1	199784136	G	A	-	-	-	-	-	-	39	0	0	45	4	8.888888889	0	0	NA	0	0	NA	1.57042276	1	0	0.42957724	1	1	0.57042276	unphased	0.535292059	0.938412869	0.57042276	0	0.99625	0.00375	0	2	7.91E-05	1	1	1	NA	NA	NA	NA
1351289	1206507710	PD9774b	1	200062301	G	A	NR5A2	CCDS1401.1	r.?	-	-	intronic	38	0	0	48	9	18.75	0	0	NA	0	0	NA	1.57042276	1	0	0.42957724	1	1	0.57042276	unphased	1.129131687	1.129131687	1	0	1	0	0	2	2.75E-12	1	1	1	NA	NA	NA	NA
1351289	1206508006	PD9774b	1	203027627	G	A	PPFIA4	CCDS44296.1	r.?	-	-	intronic	33	0	0	57	8	14.03508772	0	0	NA	0	0	NA	1.57042276	1	0	0.42957724	1	1	0.57042276	unphased	0.845197988	0.845197988	1	0.00375	0.99625	0	0	2	5.19E-10	1	1	1	NA	NA	NA	NA
1351289	1206508151	PD9774b	1	204588939	G	A	LRRN2	CCDS1448.1	r.2395c>u	c.182C>T	p.T61M	missense	34	0	0	54	10	18.51851852	66	0	0	11	0	0	1.57042276	1	0	0.42957724	1	1	0.57042276	unphased	1.115191789	1.115191789	1	0.00125	0.99625	0.0025	0	2	1.91E-13	1	1	1	NA	NA	NA	NA
1351289	1206508156	PD9774b	1	204658738	C	A	LRRN2	CCDS1448.1	r.?	-	-	upstream	36	0	0	53	10	18.86792453	0	0	NA	0	0	NA	1.57042276	1	0	0.42957724	1	1	0.57042276	unphased	1.136233144	1.136233144	1	0	1	0	0	2	1.57E-13	1	1	1	NA	NA	NA	NA
1351289	1206508250	PD9774b	1	205737397	G	A	RAB7L1	CCDS1459.1	r.2989c>u	c.?	p.?	3'UTR variant	33	0	0	54	7	12.96296296	0	0	NA	0	0	NA	1.57042276	1	0	0.42957724	1	1	0.57042276	unphased	0.780634253	0.780634253	1	0	1	0	0	2	1.13E-08	1	1	1	NA	NA	NA	NA
1351289	1206508629	PD9774b	1	210505204	C	A	HHAT	CCDS1495.1	r.?	-	-	intronic	31	0	0	36	5	13.88888889	0	0	NA	0	0	NA	1.57042276	1	0	0.42957724	1	1	0.57042276	unphased	0.836393842	0.836393842	1	0	0.9975	0.0025	0	2	1.04E-06	1	1	1	NA	NA	NA	NA
1351289	1206508663	PD9774b	1	210919378	C	A	KCNH1	CCDS31015.1	r.?	-	-	intronic	35	0	0	55	11	20	0	0	NA	0	0	NA	1.57042276	1	0	0.42957724	1	1	0.57042276	unphased	1.204407133	1.204407133	1	0	1	0	0	2	4.77E-15	1	1	1	NA	NA	NA	NA
1351289	1206508691	PD9774b	1	211314222	C	A	-	-	-	-	-	-	44	0	0	55	13	23.63636364	0	0	NA	0	0	NA	1.57042276	1	0	0.42957724	1	1	0.57042276	unphased	1.423390248	1.423390248	1	0	0.995	0.005	0	2	1.46E-18	1	1	1	NA	NA	NA	NA
1351289	1206508738	PD9774b	1	211672978	C	A	-	-	-	-	-	-	24	0	0	50	4	8	0	0	NA	0	0	NA	1.57042276	1	0	0.42957724	1	1	0.57042276	unphased	0.481762853	0.844571582	0.57042276	0	1	0	0	2	0.000119787	1	1	1	NA	NA	NA	NA
1351289	1206508778	PD9774b	1	212021777	T	A	-	-	-	-	-	-	23	0	0	40	3	7.5	0	0	NA	0	0	NA	1.57042276	1	0	0.42957724	1	1	0.57042276	unphased	0.451652675	0.791785859	0.57042276	0	1	0	0	2	0.001075403	1	1	1	NA	NA	NA	NA
1351289	1206509089	PD9774b	1	215504789	G	A	-	-	-	-	-	-	27	0	0	67	20	29.85074627	106	0	0	212	43	20.28301887	1	1	0	1	NA	NA	NA	unphased	1.627347135	1.627347135	1	0	0.95	0.05	0	2	4.42E-30	1	9.12E-55	1	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206509142	PD9774b	1	216526900	G	A	USH2A	CCDS31025.1	r.?	-	-	intronic	28	0	0	47	14	29.78723404	238	0	0	350	61	17.42857143	1	1	0	1	NA	NA	NA	unphased	1.623884695	1.623884695	1	0	0.97875	0.02125	0	2	1.79E-21	1	1.22E-72	1	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206509219	PD9774b	1	217657633	T	A	GPATCH2	CCDS1518.1	r.?	-	-	intronic	33	0	0	42	7	16.66666667	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.908602151	0.908602151	1	0	1	0	0	2	1.81E-09	1	1	1	NA	NA	NA	NA
1351289	1206509220	PD9774b	1	217657645	C	A	GPATCH2	CCDS1518.1	r.?	-	-	intronic	35	0	0	38	7	18.42105263	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.004244482	1.004244482	1	0.00125	0.99875	0	0	2	8.61E-10	1	1	1	NA	NA	NA	NA
1351289	1206509293	PD9774b	1	218515483	G	A	RRP15	CCDS1520.2	r.?	-	-	downstream	34	0	0	56	14	25	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.362903226	1.362903226	1	0	0.99375	0.00625	0	2	2.91E-20	1	1	1	NA	NA	NA	NA
1351289	1206509418	PD9774b	1	220048091	T	A	-	-	-	-	-	-	45	0	0	58	4	6.896551724	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.375973304	0.375973304	1	0.03	0.97	0	0	2	0.000213772	1	1	1	NA	NA	NA	NA
1351289	1206509473	PD9774b	1	220591232	T	A	-	-	-	-	-	-	38	0	0	57	8	14.03508772	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.765138653	0.765138653	1	0.00375	0.99625	0	0	2	5.19E-10	1	1	1	NA	NA	NA	NA
1351289	1206510602	PD9774b	1	232342782	T	A	-	-	-	-	-	-	28	0	0	57	4	7.01754386	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.382569327	0.382569327	1	0.0225	0.9775	0	0	2	0.000199821	1	1	1	NA	NA	NA	NA
1351289	1206510610	PD9774b	1	232430911	T	A	-	-	-	-	-	-	36	0	0	93	27	29.03225806	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.582726327	1.582726327	1	0	0.92	0.08	0	2	1.06E-39	1	1	1	NA	NA	NA	NA
1351289	1206510677	PD9774b	1	233284084	C	A	PCNXL2	CCDS44335.1	r.?	-	-	intronic	45	0	0	60	7	11.66666667	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.636021505	0.636021505	1	0.00375	0.99625	0	0	2	2.39E-08	1	1	1	NA	NA	NA	NA
1351289	1206510815	PD9774b	1	234607888	G	A	TARBP1	CCDS1601.1	r.?	-	-	intronic	30	0	0	59	8	13.55932203	0	0	NA	0	0	NA	2.736337341	1	1	0.263662659	2	1	0.736337341	unphased	0.974637321	0.974637321	1	0.00125	0.9975	0.00125	0	2	6.90E-10	1	1	1	NA	NA	NA	NA
1351289	1206510887	PD9774b	1	235242732	C	A	-	-	-	-	-	-	32	0	0	53	6	11.32075472	0	0	NA	0	0	NA	2.736337341	1	1	0.263662659	2	1	0.736337341	unphased	0.813730216	1.105105188	0.736337341	0.0025	0.9975	0	0	2	2.93E-07	1	1	1	NA	NA	NA	NA
1351289	1206510989	PD9774b	1	236146183	G	A	NID1	CCDS1608.1	r.?	-	-	intronic	24	0	0	47	9	19.14893617	0	0	NA	0	0	NA	2.736337341	1	1	0.263662659	2	1	0.736337341	unphased	1.376416004	1.376416004	1	0	0.99625	0.00375	0	2	2.24E-12	1	1	1	NA	NA	NA	NA
1351289	1206511266	PD9774b	1	238442130	G	A	-	-	-	-	-	-	33	0	0	52	11	21.15384615	0	0	NA	0	0	NA	2.736337341	1	1	0.263662659	2	1	0.736337341	unphased	1.520527936	1.520527936	1	0.00125	0.99125	0.0075	0	2	2.44E-15	1	1	1	NA	NA	NA	NA
1351289	1206511275	PD9774b	1	238507293	T	A	-	-	-	-	-	-	34	0	0	58	17	29.31034483	0	0	NA	0	0	NA	2.736337341	1	1	0.263662659	2	1	0.736337341	unphased	2.106813003	1.213366177	1.736337341	0	0.99625	0.00375	0	2	1.24E-25	1	1	1	NA	NA	NA	NA
1351289	1206511327	PD9774b	1	238988793	G	A	-	-	-	-	-	-	28	0	0	51	16	31.37254902	0	0	NA	0	0	NA	2.736337341	1	1	0.263662659	2	1	0.736337341	unphased	2.255043214	1.298735655	1.736337341	0	0.99625	0.00375	0	2	9.28E-25	1	1	1	NA	NA	NA	NA
1351289	1206511458	PD9774b	1	240169147	G	A	-	-	-	-	-	-	31	0	0	71	16	22.53521127	0	0	NA	0	0	NA	2.736337341	1	1	0.263662659	2	1	0.736337341	unphased	1.619819773	0.932894625	1.736337341	0.00125	0.99875	0	0	2	3.77E-22	1	1	1	NA	NA	NA	NA
1351289	1206511467	PD9774b	1	240217981	G	A	FMN2	ENST00000447095	r.?	-	-	intronic	33	0	0	66	9	13.63636364	0	0	NA	0	0	NA	2.736337341	1	1	0.263662659	2	1	0.736337341	unphased	0.980175033	0.980175033	1	0.0025	0.99625	0.00125	0	2	5.59E-11	1	1	1	NA	NA	NA	NA
1351289	1206511516	PD9774b	1	240495977	G	A	FMN2	CCDS31069.2	r.?	-	-	intronic	41	0	0	51	5	9.803921569	0	0	NA	0	0	NA	2.736337341	1	1	0.263662659	2	1	0.736337341	unphased	0.704701004	0.957035539	0.736337341	0.0025	0.99625	0.00125	0	2	6.06E-06	1	1	1	NA	NA	NA	NA
1351289	1206511529	PD9774b	1	240590169	G	A	FMN2	CCDS31069.2	r.?	-	-	intronic	31	0	0	49	12	24.48979592	0	0	NA	0	0	NA	2.736337341	1	1	0.263662659	2	1	0.736337341	unphased	1.760314346	1.013808955	1.736337341	0.00125	0.99875	0	0	2	1.90E-17	1	1	1	NA	NA	NA	NA
1351289	1206511530	PD9774b	1	240593968	G	A	FMN2	CCDS31069.2	r.?	-	-	intronic	33	0	0	69	19	27.53623188	0	0	NA	0	0	NA	2.736337341	1	1	0.263662659	2	1	0.736337341	unphased	1.979290647	1.139922871	1.736337341	0	1	0	0	2	6.95E-28	1	1	1	NA	NA	NA	NA
1351289	1206511779	PD9774b	1	242307048	C	A	PLD5	CCDS1621.1	r.?	-	-	intronic	31	0	0	73	25	34.24657534	0	0	NA	0	0	NA	2.736337341	1	1	0.263662659	2	1	0.736337341	unphased	2.461626796	1.417712294	1.736337341	0	0.98875	0.01125	0	2	5.49E-39	1	1	1	NA	NA	NA	NA
1351289	1206511898	PD9774b	1	243121974	C	A	-	-	-	-	-	-	34	0	0	58	4	6.896551724	0	0	NA	0	0	NA	2.736337341	1	1	0.263662659	2	1	0.736337341	unphased	0.495720707	0.673225	0.736337341	0.00125	0.99875	0	0	2	0.000213772	1	1	1	NA	NA	NA	NA
1351289	1206512016	PD9774b	1	244135867	G	A	-	-	-	-	-	-	32	0	0	73	19	26.02739726	0	0	NA	0	0	NA	2.736337341	1	1	0.263662659	2	1	0.736337341	unphased	1.870836365	1.077461344	1.736337341	0	0.99875	0.00125	0	2	2.35E-27	1	1	1	NA	NA	NA	NA
1351289	1206512450	PD9774b	1	247194554	T	A	-	-	-	-	-	-	18	0	0	58	15	25.86206897	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	1.927141268	0.963570634	2	0	1	0	0	2	7.42E-22	1	1	1	NA	NA	NA	NA
1351289	1206512511	PD9774b	1	247624421	C	A	-	-	-	-	-	-	31	0	0	67	9	13.43283582	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	1.000962927	1.000962927	1	0	1	0	0	2	6.43E-11	1	1	1	NA	NA	NA	NA
1351289	1206512533	PD9774b	1	247876312	C	A	OR6F1	CCDS31095.1	r.?	-	-	upstream	41	0	0	68	5	7.352941176	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	0.547912713	0.547912713	1	0.005	0.995	0	0	2	2.51E-05	1	1	1	NA	NA	NA	NA
1351289	1206512724	PD9774b	1	249223612	C	A	-	-	-	-	-	-	35	0	0	65	6	9.230769231	0	0	NA	0	0	NA	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	1.00E-06	1	1	1	NA	NA	NA	NA
1351289	1206512840	PD9774b	10	510667	C	A	DIP2C	CCDS7054.1	r.?	-	-	intronic	34	0	0	77	9	11.68831169	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	0.870967742	0.870967742	1	0.00125	0.99875	0	0	2	2.32E-10	1	1	1	NA	NA	NA	NA
1351289	1206513114	PD9774b	10	1796279	G	A	-	-	-	-	-	-	44	0	0	62	18	29.03225806	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	2.163371488	1.081685744	2	0	1	0	0	2	5.72E-27	1	1	1	NA	NA	NA	NA
1351289	1206513307	PD9774b	10	3312811	G	A	-	-	-	-	-	-	24	0	0	58	16	27.5862069	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	2.055617353	1.027808676	2	0	1	0	0	2	1.00E-23	1	1	1	NA	NA	NA	NA
1351289	1206513421	PD9774b	10	4347087	G	A	-	-	-	-	-	-	40	0	0	56	14	25	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	1.862903226	0.931451613	2	0.00125	0.99875	0	0	2	2.91E-20	1	1	1	NA	NA	NA	NA
1351289	1206514017	PD9774b	10	8558867	G	A	-	-	-	-	-	-	43	0	0	81	5	6.172839506	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.376308446	0.583800548	0.64458392	0.005	0.995	0	0	2	5.84E-05	1	1	1	NA	NA	NA	NA
1351289	1206514088	PD9774b	10	9181217	C	A	-	-	-	-	-	-	22	0	0	44	9	20.45454545	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	1.24694935	1.24694935	1	0	0.9975	0.0025	0	2	1.18E-12	1	1	1	NA	NA	NA	NA
1351289	1206514161	PD9774b	10	9632778	T	A	-	-	-	-	-	-	23	0	0	63	14	22.22222222	2	0	0	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	1.354710405	1.354710405	1	0	0.995	0.005	0	2	1.81E-19	1	1	1	NA	NA	NA	NA
1351289	1206514187	PD9774b	10	9852855	G	A	-	-	-	-	-	-	48	0	0	61	10	16.39344262	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.999376528	0.999376528	1	0	1	0	0	2	6.98E-13	1	1	1	NA	NA	NA	NA
1351289	1206514209	PD9774b	10	9970595	G	A	-	-	-	-	-	-	35	0	0	60	9	15	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.914429523	0.914429523	1	0.0025	0.9975	0	0	2	2.29E-11	1	1	1	NA	NA	NA	NA
1351289	1206514218	PD9774b	10	10060594	C	A	-	-	-	-	-	-	25	0	0	59	14	23.72881356	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	1.446555178	1.446555178	1	0	0.99125	0.00875	0	2	6.58E-20	1	1	1	NA	NA	NA	NA
1351289	1206514256	PD9774b	10	10425144	C	A	-	-	-	-	-	-	40	0	0	61	9	14.75409836	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.899438876	0.899438876	1	0.00125	0.9975	0.00125	0	2	2.68E-11	1	1	1	NA	NA	NA	NA
1351289	1206514329	PD9774b	10	11293860	G	A	CELF2	CCDS44354.1	r.?	-	-	intronic	33	0	0	63	7	11.11111111	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.677355203	1.050840987	0.64458392	0.0025	0.9975	0	0	2	3.38E-08	1	1	1	NA	NA	NA	NA
1351289	1206514439	PD9774b	10	12335479	G	A	-	-	-	-	-	-	28	0	0	52	7	13.46153846	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.82064188	0.82064188	1	0.00125	0.99875	0	0	2	8.58E-09	1	1	1	NA	NA	NA	NA
1351289	1206514664	PD9774b	10	14027002	T	A	FRMD4A	CCDS7101.1	r.?	-	-	intronic	34	0	0	50	5	10	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.609619682	0.945756888	0.64458392	0.00125	0.99875	0	0	2	5.49E-06	1	1	1	NA	NA	NA	NA
1351289	1206514845	PD9774b	10	15788899	T	A	-	-	-	-	-	-	34	0	0	47	12	25.53191489	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	1.556475785	1.556475785	1	0	0.995	0.005	0	2	1.09E-17	1	1	1	NA	NA	NA	NA
1351289	1206515044	PD9774b	10	18298619	C	A	SLC39A12	CCDS44362.1	r.?	-	-	intronic	19	0	0	45	11	24.44444444	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	1.490181446	1.490181446	1	0	0.98375	0.01625	0	2	4.24E-16	1	1	1	NA	NA	NA	NA
1351289	1206515084	PD9774b	10	18713259	G	A	CACNB2	CCDS7128.1	r.?	-	-	intronic	38	0	0	69	8	11.5942029	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.706805429	1.096529726	0.64458392	0.00125	0.99625	0.0025	0	2	2.49E-09	1	1	1	NA	NA	NA	NA
1351289	1206515510	PD9774b	10	23162590	T	A	-	-	-	-	-	-	41	0	0	58	14	24.13793103	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	1.471495785	1.471495785	1	0	0.99375	0.00625	0	2	5.04E-20	1	1	1	NA	NA	NA	NA
1351289	1206515521	PD9774b	10	23264423	G	A	ARMC3	CCDS7142.1	r.?	-	-	intronic	35	0	0	50	8	16	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.975391492	0.975391492	1	0	1	0	0	2	1.74E-10	1	1	1	NA	NA	NA	NA
1351289	1206515547	PD9774b	10	23603268	T	A	C10orf67	CCDS44365.1	r.?	-	-	downstream	20	0	0	54	4	7.407407407	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.451570135	0.700560658	0.64458392	0.0025	0.9975	0	0	2	0.000161898	1	1	1	NA	NA	NA	NA
1351289	1206515656	PD9774b	10	24971671	G	A	ARHGAP21	CCDS7144.2	r.?	-	-	intronic	41	0	0	57	7	12.28070175	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.74865575	1.161455828	0.64458392	0	0.99875	0.00125	0	2	1.66E-08	1	1	1	NA	NA	NA	NA
1351289	1206515704	PD9774b	10	25527685	C	A	GPR158	CCDS31166.1	r.?	-	-	intronic	49	0	0	66	8	12.12121212	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.738932948	1.146371986	0.64458392	0	0.99875	0.00125	0	2	1.73E-09	1	1	1	NA	NA	NA	NA
1351289	1206515851	PD9774b	10	26863306	T	A	-	-	-	-	-	-	37	0	0	64	4	6.25	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.381012301	0.591098055	0.64458392	0.0025	0.9975	0	0	2	0.000312605	1	1	1	NA	NA	NA	NA
1351289	1206515899	PD9774b	10	26969440	C	A	-	-	-	-	-	-	27	0	0	58	11	18.96551724	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	1.15617526	1.15617526	1	0.00125	0.9975	0.00125	0	2	8.96E-15	1	1	1	NA	NA	NA	NA
1351289	1206515972	PD9774b	10	27590274	C	A	-	-	-	-	-	-	29	0	0	51	8	15.68627451	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.956266168	0.956266168	1	0	1	0	0	2	2.05E-10	1	1	1	NA	NA	NA	NA
1351289	1206516099	PD9774b	10	28766468	C	A	-	-	-	-	-	-	30	0	0	62	8	12.90322581	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.786606042	0.786606042	1	0.00625	0.99375	0	0	2	1.04E-09	1	1	1	NA	NA	NA	NA
1351289	1206516150	PD9774b	10	29393230	T	A	-	-	-	-	-	-	31	0	0	50	5	10	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.609619682	0.945756888	0.64458392	0.00125	0.99625	0.0025	0	2	5.49E-06	1	1	1	NA	NA	NA	NA
1351289	1206516169	PD9774b	10	29571985	T	A	-	-	-	-	-	-	31	0	0	46	5	10.86956522	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.662630089	1.027996618	0.64458392	0.00125	0.99875	0	0	2	3.61E-06	1	1	1	NA	NA	NA	NA
1351289	1206516313	PD9774b	10	30873029	G	A	-	-	-	-	-	-	33	0	0	47	8	17.0212766	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	1.037650523	1.037650523	1	0	0.99875	0.00125	0	2	1.03E-10	1	1	1	NA	NA	NA	NA
1351289	1206516336	PD9774b	10	31038677	C	A	-	-	-	-	-	-	28	0	0	52	5	9.615384615	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.586172771	0.909381624	0.64458392	0.005	0.995	0	0	2	6.68E-06	1	1	1	NA	NA	NA	NA
1351289	1206516365	PD9774b	10	31345659	G	A	-	-	-	-	-	-	29	0	0	50	8	16	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.975391492	0.975391492	1	0	1	0	0	2	1.74E-10	1	1	1	NA	NA	NA	NA
1351289	1206516842	PD9774b	10	36396255	T	A	-	-	-	-	-	-	34	0	0	64	12	18.75	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	1.143036904	1.143036904	1	0	0.99875	0.00125	0	2	6.30E-16	1	1	1	NA	NA	NA	NA
1351289	1206516972	PD9774b	10	37529404	C	A	-	-	-	-	-	-	30	0	0	59	11	18.6440678	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	1.136579069	1.136579069	1	0	0.9975	0.0025	0	2	1.10E-14	1	1	1	NA	NA	NA	NA
1351289	1206517122	PD9774b	10	38661544	C	A	ENSG00000099251	ENST00000356314	r.?	-	-	intronic	52	0	0	49	11	22.44897959	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	1.368533981	1.368533981	1	0	0.995	0.005	0	2	1.19E-15	1	1	1	NA	NA	NA	NA
1351289	1206521377	PD9774b	10	45215702	C	A	-	-	-	-	-	-	26	0	0	62	7	11.29032258	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.688280286	1.067790035	0.64458392	0	0.9975	0.0025	0	2	3.02E-08	1	1	1	NA	NA	NA	NA
1351289	1206521399	PD9774b	10	45564554	G	A	-	-	-	-	-	-	27	0	0	47	5	10.63829787	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.648531577	1.006124349	0.64458392	0.00125	0.9975	0.00125	0	2	4.02E-06	1	1	1	NA	NA	NA	NA
1351289	1206521667	PD9774b	10	49920436	G	A	WDFY4	CCDS44385.1	r.?	-	-	intronic	23	0	0	39	7	17.94871795	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	1.094189173	1.094189173	1	0	0.9975	0.0025	0	2	1.04E-09	1	1	1	NA	NA	NA	NA
1351289	1206521709	PD9774b	10	50463075	T	A	-	-	-	-	-	-	27	0	0	40	4	10	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.609619682	0.945756888	0.64458392	0	1	0	0	2	4.95E-05	1	1	1	NA	NA	NA	NA
1351289	1206521716	PD9774b	10	50525323	G	A	C10orf71	CCDS44387.1	r.?	-	-	intronic	43	0	0	47	7	14.89361702	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.907944208	0.907944208	1	0.0025	0.99625	0.00125	0	2	4.12E-09	1	1	1	NA	NA	NA	NA
1351289	1206521893	PD9774b	10	53589428	G	A	PRKG1	CCDS7244.1	r.?	-	-	intronic	29	0	0	63	6	9.523809524	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.580590174	0.900720846	0.64458392	0.0025	0.9975	0	0	2	8.32E-07	1	1	1	NA	NA	NA	NA
1351289	1206522049	PD9774b	10	55377125	G	A	-	-	-	-	-	-	43	0	0	43	8	18.60465116	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	1.134176153	1.134176153	1	0	0.99875	0.00125	0	2	4.85E-11	1	1	1	NA	NA	NA	NA
1351289	1206522156	PD9774b	10	56374797	T	A	PCDH15	CCDS44404.1	r.?	-	-	intronic	26	0	0	58	13	22.4137931	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	1.366388943	1.366388943	1	0	0.99375	0.00625	0	2	3.12E-18	1	1	1	NA	NA	NA	NA
1351289	1206522158	PD9774b	10	56395923	G	A	PCDH15	CCDS44404.1	r.?	-	-	intronic	27	0	0	60	7	11.66666667	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.711222963	1.103383037	0.64458392	0.00125	0.995	0.00375	0	2	2.39E-08	1	1	1	NA	NA	NA	NA
1351289	1206522517	PD9774b	10	60281919	G	A	BICC1	CCDS31206.1	r.?	-	-	intronic	31	0	0	46	8	17.39130435	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	1.060208143	1.060208143	1	0	1	0	0	2	8.61E-11	1	1	1	NA	NA	NA	NA
1351289	1206522726	PD9774b	10	63076050	C	A	-	-	-	-	-	-	24	0	0	60	6	10	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.609619682	0.945756888	0.64458392	0	1	0	0	2	6.21E-07	1	1	1	NA	NA	NA	NA
1351289	1206523094	PD9774b	10	67318377	C	A	-	-	-	-	-	-	24	0	0	32	5	15.625	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.952530754	0.952530754	1	0.00125	0.99875	0	0	2	5.62E-07	1	1	1	NA	NA	NA	NA
1351289	1206523179	PD9774b	10	68301081	C	A	CTNNA3	CCDS7269.1	r.?	-	-	intronic	46	0	0	51	5	9.803921569	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.597666355	0.927212636	0.64458392	0	1	0	0	2	6.06E-06	1	1	1	NA	NA	NA	NA
1351289	1206523574	PD9774b	10	72647236	G	A	PCBD1	CCDS31217.1	r.?	-	-	intronic	26	0	0	52	8	15.38461538	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.992555831	0.992555831	1	0	1	0	0	2	2.42E-10	1	1	1	NA	NA	NA	NA
1351289	1206523581	PD9774b	10	72805682	C	A	-	-	-	-	-	-	33	0	0	56	5	8.928571429	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.576036866	0.576036866	1	0.00875	0.99125	0	0	2	9.65E-06	1	1	1	NA	NA	NA	NA
1351289	1206523592	PD9774b	10	72927384	T	A	-	-	-	-	-	-	32	0	0	57	6	10.52631579	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.679117148	0.679117148	1	0.0025	0.9975	0	0	2	4.56E-07	1	1	1	NA	NA	NA	NA
1351289	1206523950	PD9774b	10	77175971	C	A	AC010997.2	ENST00000515305	r.?	-	-	downstream	29	0	0	51	11	21.56862745	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.391524352	1.391524352	1	0	0.99	0.01	0	2	1.94E-15	1	1	1	NA	NA	NA	NA
1351289	1206523990	PD9774b	10	78003369	T	A	C10orf11	CCDS7351.1	r.?	-	-	intronic	39	0	0	59	10	16.94915254	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.093493712	1.093493712	1	0	1	0	0	2	4.91E-13	1	1	1	NA	NA	NA	NA
1351289	1206524226	PD9774b	10	81579198	T	A	-	-	-	-	-	-	36	0	0	43	7	16.27906977	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.050262566	1.050262566	1	0.0025	0.9975	0	0	2	2.15E-09	1	1	1	NA	NA	NA	NA
1351289	1206524482	PD9774b	10	85080863	G	A	-	-	-	-	-	-	33	0	0	66	10	15.15151515	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.977517107	0.977517107	1	0	1	0	0	2	1.60E-12	1	1	1	NA	NA	NA	NA
1351289	1206524513	PD9774b	10	85327520	G	A	-	-	-	-	-	-	30	0	0	57	6	10.52631579	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.679117148	0.679117148	1	0.00625	0.99375	0	0	2	4.56E-07	1	1	1	NA	NA	NA	NA
1351289	1206524517	PD9774b	10	85452479	C	A	-	-	-	-	-	-	33	0	0	41	10	24.3902439	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.573564123	1.573564123	1	0	0.99	0.01	0	2	9.51E-15	1	1	1	NA	NA	NA	NA
1351289	1206524541	PD9774b	10	85894961	G	A	GHITM	CCDS41542.1	r.?	-	-	upstream	38	0	0	50	7	14	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.903225806	0.903225806	1	0.0025	0.99625	0.00125	0	2	6.46E-09	1	1	1	NA	NA	NA	NA
1351289	1206524620	PD9774b	10	86963479	G	A	-	-	-	-	-	-	33	0	0	65	13	20	0	0	NA	0	0	NA	0.742652787	0	0	0.257347213	1	0	0.742652787	unphased	1.038853138	1.038853138	1	0	1	0	0	2	1.57E-17	1	1	1	NA	NA	NA	NA
1351289	1206524622	PD9774b	10	86963482	G	A	-	-	-	-	-	-	35	0	0	64	13	20.3125	0	0	NA	0	0	NA	0.742652787	0	0	0.257347213	1	0	0.742652787	unphased	1.055085218	1.055085218	1	0.00125	0.99875	0	0	2	1.26E-17	1	1	1	NA	NA	NA	NA
1351289	1206524698	PD9774b	10	88480229	G	A	LDB3	CCDS41544.1	r.?	-	-	intronic	36	0	0	55	10	18.18181818	0	0	NA	0	0	NA	0.742652787	0	0	0.257347213	1	0	0.742652787	unphased	0.944411944	0.944411944	1	0	1	0	0	2	2.33E-13	1	1	1	NA	NA	NA	NA
1351289	1206524906	PD9774b	10	92186490	T	A	-	-	-	-	-	-	34	0	0	37	9	24.32432432	0	0	NA	0	0	NA	0.728995003	0	0	0.271004997	1	0	0.728995003	unphased	1.260147869	1.260147869	1	0.00125	0.99625	0.0025	0	2	2.14E-13	1	1	1	NA	NA	NA	NA
1351289	1206524958	PD9774b	10	93040115	T	A	PCGF5	CCDS7413.1	r.3045u>a	c.?	p.?	3'UTR variant	24	0	0	43	5	11.62790698	0	0	NA	0	0	NA	0.728995003	0	0	0.271004997	1	0	0.728995003	unphased	0.602396268	0.826337993	0.728995003	0.0025	0.9975	0	0	2	2.57E-06	1	1	1	NA	NA	NA	NA
1351289	1206525408	PD9774b	10	97857258	C	A	-	-	-	-	-	-	31	0	0	47	5	10.63829787	0	0	NA	0	0	NA	0.728995003	0	0	0.271004997	1	0	0.728995003	unphased	0.551128501	0.756011356	0.728995003	0.0025	0.9975	0	0	2	4.02E-06	1	1	1	NA	NA	NA	NA
1351289	1206525974	PD9774b	10	105286951	T	A	NEURL	CCDS7551.1	r.?	-	-	intronic	32	0	0	36	6	16.66666667	2	0	0	0	0	NA	0.728995003	0	0	0.271004997	1	0	0.728995003	unphased	0.863434651	0.863434651	1	0.0025	0.9975	0	0	2	2.68E-08	1	1	1	NA	NA	NA	NA
1351289	1206526162	PD9774b	10	108021753	C	A	-	-	-	-	-	-	54	0	0	49	10	20.40816327	0	0	NA	0	0	NA	0.728995003	0	0	0.271004997	1	0	0.728995003	unphased	1.05726692	1.05726692	1	0.00125	0.99625	0.0025	0	2	6.72E-14	1	1	1	NA	NA	NA	NA
1351289	1206526182	PD9774b	10	108239741	C	A	-	-	-	-	-	-	31	0	0	46	7	15.2173913	0	0	NA	0	0	NA	0.728995003	0	0	0.271004997	1	0	0.728995003	unphased	0.788353377	1.081424939	0.728995003	0	0.99875	0.00125	0	2	3.53E-09	1	1	1	NA	NA	NA	NA
1351289	1206526527	PD9774b	10	113484127	C	A	-	-	-	-	-	-	34	0	0	47	11	23.40425532	0	0	NA	0	0	NA	0.728995003	0	0	0.271004997	1	0	0.728995003	unphased	1.212482702	1.212482702	1	0.00125	0.99875	0	0	2	7.21E-16	1	1	1	NA	NA	NA	NA
1351289	1206526554	PD9774b	10	113844140	C	A	-	-	-	-	-	-	22	0	0	34	6	17.64705882	0	0	NA	0	0	NA	0.728995003	0	0	0.271004997	1	0	0.728995003	unphased	0.914224925	0.914224925	1	0.00125	0.99875	0	0	2	1.86E-08	1	1	1	NA	NA	NA	NA
1351289	1206527046	PD9774b	10	120945738	G	A	-	-	-	-	-	-	33	0	0	48	5	10.41666667	0	0	NA	0	0	NA	0.728995003	0	0	0.271004997	1	0	0.728995003	unphased	0.539646657	0.740261119	0.728995003	0.00125	0.99875	0	0	2	4.47E-06	1	1	1	NA	NA	NA	NA
1351289	1206527203	PD9774b	10	122847806	T	A	-	-	-	-	-	-	36	0	0	38	4	10.52631579	0	0	NA	0	0	NA	0.728995003	0	0	0.271004997	1	0	0.728995003	unphased	0.545327148	0.748053341	0.728995003	0.005	0.995	0	0	2	4.03E-05	1	1	1	NA	NA	NA	NA
1351289	1206527314	PD9774b	10	124308566	T	A	-	-	-	-	-	-	23	0	0	49	5	10.20408163	0	0	NA	0	0	NA	0.728995003	0	0	0.271004997	1	0	0.728995003	unphased	0.52863346	0.725153749	0.728995003	0	1	0	0	2	4.96E-06	1	1	1	NA	NA	NA	NA
1351289	1206528178	PD9774b	10	129990603	C	A	-	-	-	-	-	-	31	0	0	46	10	21.73913043	0	0	NA	0	0	NA	0.728995003	0	0	0.271004997	1	0	0.728995003	unphased	1.12621911	1.12621911	1	0.00125	0.99875	0	0	2	3.38E-14	1	1	1	NA	NA	NA	NA
1351289	1206528404	PD9774b	10	133137403	T	A	-	-	-	-	-	-	22	0	0	41	5	12.19512195	0	0	NA	0	0	NA	0.728995003	0	0	0.271004997	1	0	0.728995003	unphased	0.631781452	0.866647164	0.728995003	0.0025	0.99625	0.00125	0	2	2.02E-06	1	1	1	NA	NA	NA	NA
1351289	1206528455	PD9774b	10	133939513	T	A	JAKMIP3	CCDS44494.1	r.?	-	-	intronic	31	0	0	55	5	9.090909091	0	0	NA	0	0	NA	0.728995003	0	0	0.271004997	1	0	0.728995003	unphased	0.470964355	0.646046067	0.728995003	0.00125	0.99875	0	0	2	8.83E-06	1	1	1	NA	NA	NA	NA
1351289	1206529346	PD9774b	11	1353650	G	A	-	-	-	-	-	-	45	0	0	49	7	14.28571429	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.778801843	0.778801843	1	0.0025	0.9975	0	0	2	5.58E-09	1	1	1	NA	NA	NA	NA
1351289	1206529396	PD9774b	11	1855959	C	A	SYT8	CCDS7726.2	r.?	-	-	intronic	26	0	0	33	5	15.15151515	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.826001955	0.826001955	1	0	1	0	0	2	6.60E-07	1	1	1	NA	NA	NA	NA
1351289	1206529409	PD9774b	11	2060431	G	A	-	-	-	-	-	-	31	0	0	24	6	25	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.362903226	1.362903226	1	0	0.9975	0.0025	0	2	1.95E-09	1	1	1	NA	NA	NA	NA
1351289	1206529734	PD9774b	11	5224691	T	A	OR51V1	CCDS31375.1	r.?	-	-	upstream	33	0	0	35	3	8.571428571	0	0	NA	0	0	NA	0.502376961	0	0	0.497623039	1	0	0.502376961	unphased	0.424627703	0.845237213	0.502376961	0.00125	0.99875	0	0	2	0.000725791	1	1	1	NA	NA	NA	NA
1351289	1206529816	PD9774b	11	5928084	T	A	TRIM5	ENST00000412903	r.?	-	-	intronic	46	0	0	46	6	13.04347826	0	0	NA	0	0	NA	0.502376961	0	0	0.497623039	1	0	0.502376961	unphased	0.646172591	1.286230541	0.502376961	0	0.9975	0.0025	0	2	1.23E-07	1	1	1	NA	NA	NA	NA
1351289	1206530256	PD9774b	11	11318348	G	A	GALNTL4	CCDS7807.1	r.?	-	-	intronic	32	0	0	39	7	17.94871795	0	0	NA	0	0	NA	1.258735013	1	0	0.741264987	2	0	0.258735013	unphased	1.024934241	1.024934241	1	0	0.99875	0.00125	0	2	1.04E-09	1	1	1	NA	NA	NA	NA
1351289	1206530262	PD9774b	11	11373715	C	A	GALNTL4	CCDS7807.1	r.?	-	-	intronic	31	0	0	60	12	20	0	0	NA	0	0	NA	1.258735013	1	0	0.741264987	2	0	0.258735013	unphased	1.142069583	1.142069583	1	0.0025	0.9975	0	0	2	2.74E-16	1	1	1	NA	NA	NA	NA
1351289	1206530721	PD9774b	11	17911516	C	A	SERGEF	CCDS7828.1	r.?	-	-	intronic	39	0	0	28	5	17.85714286	0	0	NA	0	0	NA	1.228568745	1	0	0.771431255	2	0	0.228568745	unphased	1.014318152	1.014318152	1	0.00125	0.99875	0	0	2	2.79E-07	1	1	1	NA	NA	NA	NA
1351289	1206530936	PD9774b	11	20399304	G	A	HTATIP2	CCDS7852.1	r.?	-	-	intronic	32	0	0	77	13	16.88311688	0	0	NA	0	0	NA	2.605509359	2	0	0.394490641	3	0	0.605509359	unphased	1.1914622	1.1914622	1	0	0.99875	0.00125	0	2	1.67E-16	1	1	1	NA	NA	NA	NA
1351289	1206530987	PD9774b	11	21031855	T	A	NELL1	CCDS7855.1	r.?	-	-	intronic	30	0	0	60	4	6.666666667	0	0	NA	1	0	0	1.203721092	1	0	0.796278908	2	0	0.203721092	unphased	0.377022266	0.377022266	1	0.02125	0.97875	0	0	2	0.000243755	1	1	1	NA	NA	NA	NA
1351289	1206531031	PD9774b	11	21635290	G	A	-	-	-	-	-	-	33	0	0	52	12	23.07692308	0	0	NA	0	0	NA	1.203721092	1	0	0.796278908	2	0	0.203721092	unphased	1.305077076	1.305077076	1	0.00125	0.99625	0.0025	0	2	4.19E-17	1	1	1	NA	NA	NA	NA
1351289	1206531216	PD9774b	11	23504069	G	A	-	-	-	-	-	-	43	0	0	48	10	20.83333333	0	0	NA	0	0	NA	1.203721092	1	0	0.796278908	2	0	0.203721092	unphased	1.178194582	1.178194582	1	0.00125	0.9975	0.00125	0	2	5.37E-14	1	1	1	NA	NA	NA	NA
1351289	1206531340	PD9774b	11	24855146	G	A	LUZP2	CCDS31446.1	r.?	-	-	intronic	32	0	0	41	17	41.46341463	81	0	0	66	12	18.18181818	1.203721092	1	0	0.796278908	2	0	0.203721092	unphased	2.344894583	1.948038129	1.203721092	0	0.79375	0.20625	0	2	1.03E-28	1	9.36E-16	1	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206531847	PD9774b	11	31085993	G	A	ENSG00000226746	ENST00000399333	r.?	-	-	intronic	34	0	0	58	12	20.68965517	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	1.541713014	1.541713014	1	0	0.9825	0.0175	0	2	1.76E-16	1	1	1	NA	NA	NA	NA
1351289	1206531898	PD9774b	11	32081302	T	A	-	-	-	-	-	-	34	0	0	51	6	11.76470588	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	0.876660342	0.876660342	1	0.00375	0.99625	0	0	2	2.32E-07	1	1	1	NA	NA	NA	NA
1351289	1206531901	PD9774b	11	32103066	G	A	-	-	-	-	-	-	32	0	0	50	9	18	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	1.341290323	1.341290323	1	0	0.99375	0.00625	0	2	4.07E-12	1	1	1	NA	NA	NA	NA
1351289	1206531910	PD9774b	11	32219407	C	A	-	-	-	-	-	-	44	0	0	46	13	28.26086957	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	2.105890603	1.052945302	2	0	0.9975	0.0025	0	2	1.07E-19	1	1	1	NA	NA	NA	NA
1351289	1206532460	PD9774b	11	37383947	T	A	-	-	-	-	-	-	37	0	0	54	6	11.11111111	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	0.827956989	0.827956989	1	0.00125	0.9975	0.00125	0	2	3.29E-07	1	1	1	NA	NA	NA	NA
1351289	1206532470	PD9774b	11	37585113	C	A	-	-	-	-	-	-	43	0	0	67	14	20.89552239	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	1.557053442	1.557053442	1	0	0.98875	0.01125	0	2	4.66E-19	1	1	1	NA	NA	NA	NA
1351289	1206532501	PD9774b	11	37973234	C	A	-	-	-	-	-	-	40	0	0	53	14	26.41509434	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	1.968350578	0.984175289	2	0	1	0	0	2	1.22E-20	1	1	1	NA	NA	NA	NA
1351289	1206532564	PD9774b	11	38719591	T	A	-	-	-	-	-	-	26	0	0	38	3	7.894736842	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	0.588285229	0.588285229	1	0.00625	0.99375	0	0	2	0.000925091	1	1	1	NA	NA	NA	NA
1351289	1206532748	PD9774b	11	40580169	C	A	-	-	-	-	-	-	44	0	0	56	8	14.28571429	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	1.064516129	1.064516129	1	0.00125	0.99875	0	0	2	4.48E-10	1	1	1	NA	NA	NA	NA
1351289	1206532832	PD9774b	11	41922193	G	A	-	-	-	-	-	-	31	0	0	62	5	8.064516129	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	0.600936524	0.600936524	1	0.00125	0.99875	0	0	2	1.60E-05	1	1	1	NA	NA	NA	NA
1351289	1206532855	PD9774b	11	42352635	C	A	-	-	-	-	-	-	31	0	0	58	7	12.06896552	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	0.899332592	0.899332592	1	0	1	0	0	2	1.88E-08	1	1	1	NA	NA	NA	NA
1351289	1206532858	PD9774b	11	42449985	C	A	-	-	-	-	-	-	42	0	0	51	6	11.76470588	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	0.876660342	0.876660342	1	0.00125	0.99875	0	0	2	2.32E-07	1	1	1	NA	NA	NA	NA
1351289	1206532897	PD9774b	11	42845820	T	A	-	-	-	-	-	-	32	0	0	62	8	12.90322581	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	0.961498439	0.961498439	1	0.00125	0.9975	0.00125	0	2	1.04E-09	1	1	1	NA	NA	NA	NA
1351289	1206532948	PD9774b	11	43471383	G	A	TTC17	CCDS31466.1	r.?	-	-	intronic	32	0	0	54	6	11.11111111	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	0.827956989	0.827956989	1	0.0025	0.99625	0.00125	0	2	3.29E-07	1	1	1	NA	NA	NA	NA
1351289	1206533028	PD9774b	11	44471765	C	A	-	-	-	-	-	-	35	0	0	44	8	18.18181818	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	1.35483871	1.35483871	1	0	0.99625	0.00375	0	2	5.90E-11	1	1	1	NA	NA	NA	NA
1351289	1206533029	PD9774b	11	44471767	G	A	-	-	-	-	-	-	37	0	0	43	8	18.60465116	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	1.386346587	1.386346587	1	0	0.99875	0.00125	0	2	4.85E-11	1	1	1	NA	NA	NA	NA
1351289	1206533057	PD9774b	11	44637989	G	A	CD82	CCDS7909.1	r.?	-	-	intronic	33	0	0	56	8	14.28571429	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	1.064516129	1.064516129	1	0.00125	0.9975	0.00125	0	2	4.48E-10	1	1	1	NA	NA	NA	NA
1351289	1206533177	PD9774b	11	46166489	C	A	-	-	-	-	-	-	29	0	0	55	17	30.90909091	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	2.303225806	1.151612903	2	0	0.99625	0.00375	0	2	4.35E-26	1	1	1	NA	NA	NA	NA
1351289	1206534029	PD9774b	11	49006483	C	A	ENSG00000220948	ENST00000437540	r.?	-	-	upstream	28	0	0	58	5	8.620689655	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.383759733	0.383759733	1	0.05125	0.94875	0	0	2	1.15E-05	1	1	1	NA	NA	NA	NA
1351289	1206534661	PD9774b	11	51415309	T	A	OR4A5	CCDS31497.1	r.?	-	-	upstream	45	0	0	42	5	11.9047619	0	0	NA	0	0	NA	1.485754291	1	0	0.514245709	1	1	0.485754291	unphased	0.706829428	0.706829428	1	0.00375	0.99625	0	0	2	2.28E-06	1	1	1	NA	NA	NA	NA
1351289	1206535172	PD9774b	11	55574921	G	A	OR5L1	CCDS31509.1	r.?	-	-	upstream	27	0	0	59	13	22.03389831	0	0	NA	0	0	NA	1.485754291	1	0	0.514245709	1	1	0.485754291	unphased	1.30823345	1.30823345	1	0.00125	0.995	0.00375	0	2	3.99E-18	1	1	1	NA	NA	NA	NA
1351289	1206535173	PD9774b	11	55575500	G	A	OR5L1	CCDS31509.1	r.?	-	-	upstream	35	0	0	59	11	18.6440678	0	0	NA	0	0	NA	1.485754291	1	0	0.514245709	1	1	0.485754291	unphased	1.106966765	1.106966765	1	0	1	0	0	2	1.10E-14	1	1	1	NA	NA	NA	NA
1351289	1206535218	PD9774b	11	56029718	C	A	-	-	-	-	-	-	35	0	0	37	6	16.21621622	0	0	NA	0	0	NA	1.485754291	1	0	0.514245709	1	1	0.485754291	unphased	0.962816302	0.962816302	1	0	1	0	0	2	3.18E-08	1	1	1	NA	NA	NA	NA
1351289	1206535251	PD9774b	11	56289868	T	A	OR5M5P	ENST00000341231	r.?	-	-	downstream	42	0	0	73	9	12.32876712	0	0	NA	0	0	NA	1.485754291	1	0	0.514245709	1	1	0.485754291	unphased	0.732004175	0.732004175	1	0.0025	0.9975	0	0	2	1.42E-10	1	1	1	NA	NA	NA	NA
1351289	1206535450	PD9774b	11	58462904	C	A	-	-	-	-	-	-	38	0	0	47	6	12.76595745	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.695950583	0.695950583	1	0.0025	0.9975	0	0	2	1.41E-07	1	1	1	NA	NA	NA	NA
1351289	1206535503	PD9774b	11	59105848	C	A	-	-	-	-	-	-	37	0	0	42	9	21.42857143	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.168202765	1.168202765	1	0	1	0	0	2	7.51E-13	1	1	1	NA	NA	NA	NA
1351289	1206535798	PD9774b	11	62586287	G	A	STX5	CCDS8038.2	r.?	-	-	intronic	30	0	0	56	10	17.85714286	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.973502304	0.973502304	1	0.0025	0.9975	0	0	2	2.82E-13	1	1	1	NA	NA	NA	NA
1351289	1206536023	PD9774b	11	65353093	G	A	EHBP1L1	CCDS44649.1	r.?	-	-	intronic	29	0	0	14	5	35.71428571	0	0	NA	0	0	NA	1.26776812	1	0	0.73223188	2	0	0.26776812	unphased	2.04263608	2.04263608	1	0	0.98625	0.01375	0	2	6.03E-09	1	1	1	NA	NA	NA	NA
1351289	1206536143	PD9774b	11	66347689	G	A	-	-	-	-	-	-	26	0	0	44	7	15.90909091	0	0	NA	0	0	NA	1.26776812	1	0	0.73223188	2	0	0.26776812	unphased	0.909901526	0.909901526	1	0.00375	0.995	0.00125	0	2	2.55E-09	1	1	1	NA	NA	NA	NA
1351289	1206536614	PD9774b	11	70347265	C	A	SHANK2	ENST00000338508	r.?	-	-	intronic	41	0	0	48	9	18.75	0	0	NA	0	0	NA	1.26776812	1	0	0.73223188	2	0	0.26776812	unphased	1.072383942	1.072383942	1	0.00125	0.99625	0.0025	0	2	2.75E-12	1	1	1	NA	NA	NA	NA
1351289	1206536844	PD9774b	11	72502702	C	A	STARD10	CCDS41688.1	r.?	-	-	intronic	27	0	0	34	9	26.47058824	0	0	NA	0	0	NA	1.26776812	1	0	0.73223188	2	0	0.26776812	unphased	1.5139538	1.5139538	1	0	0.99125	0.00875	0	2	9.15E-14	1	1	1	NA	NA	NA	NA
1351289	1206537271	PD9774b	11	77908158	G	A	USP35	CCDS41693.1	r.?	-	-	intronic	32	0	0	25	5	20	0	0	NA	0	0	NA	1.26776812	1	0	0.73223188	2	0	0.26776812	unphased	1.143876205	1.143876205	1	0.00375	0.99375	0.0025	0	2	1.53E-07	1	1	1	NA	NA	NA	NA
1351289	1206537301	PD9774b	11	78463800	C	A	ODZ4	CCDS44688.1	r.?	-	-	intronic	32	0	0	51	18	35.29411765	0	0	NA	0	0	NA	1.26776812	1	0	0.73223188	2	0	0.26776812	unphased	2.018605067	1.592251008	1.26776812	0	0.9575	0.0425	0	2	9.10E-29	1	1	1	NA	NA	NA	NA
1351289	1206537366	PD9774b	11	79623486	T	A	-	-	-	-	-	-	43	0	0	42	10	23.80952381	0	0	NA	0	0	NA	1.26776812	1	0	0.73223188	2	0	0.26776812	unphased	1.361757387	1.361757387	1	0	0.995	0.005	0	2	1.24E-14	1	1	1	NA	NA	NA	NA
1351289	1206537523	PD9774b	11	81639304	C	A	AP002802.1	ENST00000500502	r.?	-	-	intronic	34	0	0	58	15	25.86206897	0	0	NA	0	0	NA	1.26776812	1	0	0.73223188	2	0	0.26776812	unphased	1.479150265	1.479150265	1	0	0.98875	0.01125	0	2	7.42E-22	1	1	1	NA	NA	NA	NA
1351289	1206537528	PD9774b	11	81676160	C	A	AP002802.1	ENST00000500502	r.?	-	-	intronic	44	0	0	56	15	26.78571429	0	0	NA	0	0	NA	1.26776812	1	0	0.73223188	2	0	0.26776812	unphased	1.53197706	1.208404783	1.26776812	0	0.99625	0.00375	0	2	4.09E-22	1	1	1	NA	NA	NA	NA
1351289	1206537534	PD9774b	11	81756374	T	A	AP002802.1	ENST00000500502	r.?	-	-	intronic	45	0	0	55	12	21.81818182	0	0	NA	0	0	NA	1.26776812	1	0	0.73223188	2	0	0.26776812	unphased	1.247864951	1.247864951	1	0.00125	0.99625	0.0025	0	2	8.78E-17	1	1	1	NA	NA	NA	NA
1351289	1206538236	PD9774b	11	90963343	C	A	-	-	-	-	-	-	34	0	0	47	9	19.14893617	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.043925875	1.043925875	1	0.00125	0.9975	0.00125	0	2	2.24E-12	1	1	1	NA	NA	NA	NA
1351289	1206538322	PD9774b	11	91931036	T	A	-	-	-	-	-	-	28	0	0	53	5	9.433962264	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.514303104	0.514303104	1	0.0125	0.9875	0	0	2	7.34E-06	1	1	1	NA	NA	NA	NA
1351289	1206538325	PD9774b	11	91954306	T	A	-	-	-	-	-	-	38	0	0	46	9	19.56521739	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.066619916	1.066619916	1	0.00125	0.9975	0.00125	0	2	1.82E-12	1	1	1	NA	NA	NA	NA
1351289	1206538355	PD9774b	11	92302478	G	A	FAT3	CCDS44706.1	r.?	-	-	intronic	44	0	0	48	6	12.5	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.681451613	0.681451613	1	0.0025	0.9975	0	0	2	1.60E-07	1	1	1	NA	NA	NA	NA
1351289	1206538448	PD9774b	11	93489603	G	A	C11orf54	CCDS8294.1	r.?	-	-	intronic	20	0	0	36	7	19.44444444	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.060035842	1.060035842	1	0	1	0	0	2	5.74E-10	1	1	1	NA	NA	NA	NA
1351289	1206538579	PD9774b	11	95333833	C	A	-	-	-	-	-	-	24	0	0	38	6	15.78947368	1	0	0	3	1	33.33333333	1	1	0	1	NA	NA	NA	unphased	0.860780985	0.860780985	1	0	1	0	0	2	3.76E-08	1	0.014925125	1	NA	NA	NA	NA
1351289	1206538837	PD9774b	11	98362359	G	A	-	-	-	-	-	-	32	0	0	65	13	20	0	0	NA	0	0	NA	1.238591577	1	0	0.761408423	2	0	0.238591577	unphased	1.138040896	1.138040896	1	0	1	0	0	2	1.57E-17	1	1	1	NA	NA	NA	NA
1351289	1206538962	PD9774b	11	99617055	G	A	-	-	-	-	-	-	36	0	0	62	15	24.19354839	0	0	NA	0	0	NA	1.238591577	1	0	0.761408423	2	0	0.238591577	unphased	1.376662374	1.376662374	1	0	0.99375	0.00625	0	2	2.28E-21	1	1	1	NA	NA	NA	NA
1351289	1206539044	PD9774b	11	100532746	G	A	-	-	-	-	-	-	36	0	0	60	11	18.33333333	0	0	NA	0	0	NA	1.238591577	1	0	0.761408423	2	0	0.238591577	unphased	1.043204155	1.043204155	1	0.00125	0.99875	0	0	2	1.34E-14	1	1	1	NA	NA	NA	NA
1351289	1206539097	PD9774b	11	101110924	G	A	-	-	-	-	-	-	29	0	0	49	13	26.53061224	0	0	NA	0	0	NA	1.238591577	1	0	0.761408423	2	0	0.238591577	unphased	1.509646086	1.509646086	1	0	0.9875	0.0125	0	2	2.71E-19	1	1	1	NA	NA	NA	NA
1351289	1206539195	PD9774b	11	102374806	C	A	-	-	-	-	-	-	27	0	0	57	8	14.03508772	0	0	NA	0	0	NA	1.238591577	1	0	0.761408423	2	0	0.238591577	unphased	0.79862519	0.79862519	1	0.00375	0.99625	0	0	2	5.19E-10	1	1	1	NA	NA	NA	NA
1351289	1206539296	PD9774b	11	103415743	C	A	-	-	-	-	-	-	30	0	0	43	12	27.90697674	0	0	NA	0	0	NA	1.238591577	1	0	0.761408423	2	0	0.238591577	unphased	1.587964041	1.587964041	1	0	0.98875	0.01125	0	2	3.24E-18	1	1	1	NA	NA	NA	NA
1351289	1206539392	PD9774b	11	104640048	G	A	-	-	-	-	-	-	34	0	0	41	8	19.51219512	232	0	0	200	45	22.5	1.238591577	1	0	0.761408423	2	0	0.238591577	unphased	1.110283801	1.110283801	1	0.0025	0.99625	0.00125	0	2	3.22E-11	1	1.83E-59	1	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206539573	PD9774b	11	107347906	G	A	-	-	-	-	-	-	38	0	0	55	15	27.27272727	0	0	NA	0	0	NA	1.238591577	1	0	0.761408423	2	0	0.238591577	unphased	1.551873949	1.252934364	1.238591577	0	0.99625	0.00375	0	2	3.01E-22	1	1	1	NA	NA	NA	NA
1351289	1206539611	PD9774b	11	107778229	C	A	SLC35F2	CCDS41709.1	r.?	-	-	intronic	22	0	0	31	8	25.80645161	0	0	NA	0	0	NA	1.238591577	1	0	0.761408423	2	0	0.238591577	unphased	1.468439866	1.468439866	1	0	0.99625	0.00375	0	2	2.78E-12	1	1	1	NA	NA	NA	NA
1351289	1206539760	PD9774b	11	109488111	G	A	-	-	-	-	-	-	39	0	0	62	9	14.51612903	0	0	NA	0	0	NA	1.238591577	1	0	0.761408423	2	0	0.238591577	unphased	0.825997424	0.825997424	1	0.00125	0.99875	0	0	2	3.12E-11	1	1	1	NA	NA	NA	NA
1351289	1206539779	PD9774b	11	109711044	G	A	-	-	-	-	-	-	42	0	0	50	7	14	0	0	NA	0	0	NA	1.238591577	1	0	0.761408423	2	0	0.238591577	unphased	0.796628627	0.796628627	1	0.0025	0.9975	0	0	2	6.46E-09	1	1	1	NA	NA	NA	NA
1351289	1206540007	PD9774b	11	112881098	T	A	-	-	-	-	-	-	38	0	0	53	13	24.52830189	0	0	NA	0	0	NA	1.238591577	1	0	0.761408423	2	0	0.238591577	unphased	1.395710533	1.395710533	1	0	0.995	0.005	0	2	8.53E-19	1	1	1	NA	NA	NA	NA
1351289	1206540037	PD9774b	11	113404708	G	A	-	-	-	-	-	-	45	0	0	51	13	25.49019608	0	0	NA	0	0	NA	1.238591577	1	0	0.761408423	2	0	0.238591577	unphased	1.450444279	1.450444279	1	0	0.99375	0.00625	0	2	4.87E-19	1	1	1	NA	NA	NA	NA
1351289	1206540279	PD9774b	11	116061329	T	A	-	-	-	-	-	-	35	0	0	38	9	23.68421053	0	0	NA	0	0	NA	1.238591577	1	0	0.761408423	2	0	0.238591577	unphased	1.347680008	1.347680008	1	0	0.9975	0.0025	0	2	2.79E-13	1	1	1	NA	NA	NA	NA
1351289	1206540314	PD9774b	11	116417730	C	A	-	-	-	-	-	-	25	0	0	46	7	15.2173913	0	0	NA	0	0	NA	1.238591577	1	0	0.761408423	2	0	0.238591577	unphased	0.865900682	0.865900682	1	0.00125	0.99875	0	0	2	3.53E-09	1	1	1	NA	NA	NA	NA
1351289	1206540393	PD9774b	11	117304320	G	A	DSCAML1	CCDS8384.1	r.?	-	-	intronic	25	0	0	47	11	23.40425532	0	0	NA	0	0	NA	1.238591577	1	0	0.761408423	2	0	0.238591577	unphased	1.331749985	1.331749985	1	0.00125	0.99625	0.0025	0	2	7.21E-16	1	1	1	NA	NA	NA	NA
1351289	1206540684	PD9774b	11	119972023	G	A	-	-	-	-	-	-	24	0	0	54	11	20.37037037	0	0	NA	0	0	NA	1.238591577	1	0	0.761408423	2	0	0.238591577	unphased	1.159115727	1.159115727	1	0.00125	0.99875	0	0	2	3.84E-15	1	1	1	NA	NA	NA	NA
1351289	1206540688	PD9774b	11	120037766	C	A	ENSG00000176984	ENST00000319763	r.?	-	-	upstream	30	0	0	55	10	18.18181818	0	0	NA	0	0	NA	1.238591577	1	0	0.761408423	2	0	0.238591577	unphased	1.034582633	1.034582633	1	0	1	0	0	2	2.33E-13	1	1	1	NA	NA	NA	NA
1351289	1206540769	PD9774b	11	121016578	G	A	TECTA	CCDS8434.1	r.4129g>a	c.3858G>A	p.P1286P	silent	27	0	0	62	17	27.41935484	134	0	0	142	33	23.23943662	1.238591577	1	0	0.761408423	2	0	0.238591577	unphased	1.560217357	1.25967057	1.238591577	0	0.9975	0.0025	0	2	4.56E-25	1	1.47E-44	1	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206541343	PD9774b	11	127139942	C	A	-	-	-	-	-	-	37	0	0	56	12	21.42857143	0	0	NA	0	0	NA	1.238591577	1	0	0.761408423	2	0	0.238591577	unphased	1.219329531	1.219329531	1	0	0.99875	0.00125	0	2	1.11E-16	1	1	1	NA	NA	NA	NA
1351289	1206541368	PD9774b	11	127499233	G	A	-	-	-	-	-	-	49	0	0	69	17	24.63768116	0	0	NA	0	0	NA	1.238591577	1	0	0.761408423	2	0	0.238591577	unphased	1.401934437	1.401934437	1	0	0.9975	0.0025	0	2	3.56E-24	1	1	1	NA	NA	NA	NA
1351289	1206541685	PD9774b	11	132017579	C	A	OPCML	CCDS8491.1	r.?	-	-	intronic	21	0	0	49	15	30.6122449	0	0	NA	0	0	NA	1.238591577	1	0	0.761408423	2	0	0.238591577	unphased	1.741899331	1.406354898	1.238591577	0	0.995	0.005	0	2	4.10E-23	1	1	1	NA	NA	NA	NA
1351289	1206541686	PD9774b	11	132017580	C	A	OPCML	CCDS8491.1	r.?	-	-	intronic	21	0	0	48	15	31.25	0	0	NA	0	0	NA	1.238591577	1	0	0.761408423	2	0	0.238591577	unphased	1.7781889	1.435653959	1.238591577	0	0.98875	0.01125	0	2	2.86E-23	1	1	1	NA	NA	NA	NA
1351289	1206541725	PD9774b	11	132598436	T	A	ENSG00000183715	CCDS8492.1	r.?	-	-	intronic	38	0	0	45	6	13.33333333	0	0	NA	0	0	NA	1.238591577	1	0	0.761408423	2	0	0.238591577	unphased	0.758693931	0.758693931	1	0.0025	0.9975	0	0	2	1.08E-07	1	1	1	NA	NA	NA	NA
1351289	1206541989	PD9774b	12	240705	C	A	IQSEC3	CCDS31725.1	r.?	-	-	intronic	43	0	0	43	14	32.55813953	0	0	NA	0	0	NA	2	2	0	1	NA	NA	NA	unphased	2.100525131	1.050262566	2	0	1	0	0	2	4.18E-22	1	1	1	NA	NA	NA	NA
1351289	1206542480	PD9774b	12	4894685	G	A	-	-	-	-	-	-	23	0	0	56	12	21.42857143	0	0	NA	0	0	NA	2	2	0	1	NA	NA	NA	unphased	1.382488479	1.382488479	1	0	0.99375	0.00625	0	2	1.11E-16	1	1	1	NA	NA	NA	NA
1351289	1206542761	PD9774b	12	7304272	T	A	CLSTN3	CCDS8575.1	r.?	-	-	intronic	38	0	0	46	5	10.86956522	0	0	NA	0	0	NA	2	2	0	1	NA	NA	NA	unphased	0.701262272	0.701262272	1	0.0025	0.9975	0	0	2	3.61E-06	1	1	1	NA	NA	NA	NA
1351289	1206542833	PD9774b	12	7916687	G	A	ENSG00000205857	CCDS44826.1	r.?	-	-	upstream	32	0	0	55	14	25.45454545	0	0	NA	0	0	NA	2	2	0	1	NA	NA	NA	unphased	1.642228739	0.82111437	2	0	1	0	0	2	2.19E-20	1	1	1	NA	NA	NA	NA
1351289	1206542841	PD9774b	12	7955264	C	A	-	-	-	-	-	-	41	0	0	48	4	8.333333333	0	0	NA	0	0	NA	2	2	0	1	NA	NA	NA	unphased	0.537634409	0.537634409	1	0.0075	0.9925	0	0	2	0.000102016	1	1	1	NA	NA	NA	NA
1351289	1206542941	PD9774b	12	8472440	G	A	-	-	-	-	-	-	40	0	0	69	13	18.84057971	0	0	NA	0	0	NA	2	2	0	1	NA	NA	NA	unphased	1.215521272	1.215521272	1	0	1	0	0	2	3.64E-17	1	1	1	NA	NA	NA	NA
1351289	1206543903	PD9774b	12	18025627	C	A	-	-	-	-	-	-	32	0	0	47	10	21.27659574	1	0	0	0	0	NA	1.283669778	1	0	0.716330222	2	0	0.283669778	unphased	1.220272911	1.220272911	1	0	0.99875	0.00125	0	2	4.27E-14	1	1	1	NA	NA	NA	NA
1351289	1206544019	PD9774b	12	19656225	T	A	AEBP2	CCDS44842.1	r.?	-	-	intronic	39	0	0	56	12	21.42857143	0	0	NA	0	0	NA	1.283669778	1	0	0.716330222	2	0	0.283669778	unphased	1.228989146	1.228989146	1	0	1	0	0	2	1.11E-16	1	1	1	NA	NA	NA	NA
1351289	1206544149	PD9774b	12	20958496	T	A	-	-	-	-	-	-	42	0	0	47	13	27.65957447	0	0	NA	0	0	NA	1.283669778	1	0	0.716330222	2	0	0.283669778	unphased	1.586354784	1.235796629	1.283669778	0	0.99875	0.00125	0	2	1.47E-19	1	1	1	NA	NA	NA	NA
1351289	1206544306	PD9774b	12	23210216	C	A	-	-	-	-	-	-	48	0	0	71	12	16.90140845	0	0	NA	0	0	NA	1.283669778	1	0	0.716330222	2	0	0.283669778	unphased	0.969343552	0.969343552	1	0	1	0	0	2	2.38E-15	1	1	1	NA	NA	NA	NA
1351289	1206544330	PD9774b	12	23570573	G	A	-	-	-	-	-	-	24	0	0	36	11	30.55555556	0	0	NA	0	0	NA	1.283669778	1	0	0.716330222	2	0	0.283669778	unphased	1.752447486	1.365185592	1.283669778	0	0.99	0.01	0	2	2.62E-17	1	1	1	NA	NA	NA	NA
1351289	1206544924	PD9774b	12	30129149	C	A	-	-	-	-	-	-	24	0	0	52	12	23.07692308	0	0	NA	0	0	NA	1.283669778	1	0	0.716330222	2	0	0.283669778	unphased	1.323526773	1.323526773	1	0.00125	0.99375	0.005	0	2	4.19E-17	1	1	1	NA	NA	NA	NA
1351289	1206544945	PD9774b	12	30525648	C	A	-	-	-	-	-	-	35	0	0	54	9	16.66666667	0	0	NA	0	0	NA	1.283669778	1	0	0.716330222	2	0	0.283669778	unphased	0.955880447	0.955880447	1	0	1	0	0	2	8.48E-12	1	1	1	NA	NA	NA	NA
1351289	1206545163	PD9774b	12	32808027	C	A	-	-	-	-	-	-	35	0	0	54	8	14.81481481	0	0	NA	0	0	NA	1.283669778	1	0	0.716330222	2	0	0.283669778	unphased	0.849671508	0.849671508	1	0.0025	0.9975	0	0	2	3.31E-10	1	1	1	NA	NA	NA	NA
1351289	1206545225	PD9774b	12	33491719	G	A	-	-	-	-	-	-	25	0	0	46	11	23.91304348	0	0	NA	0	0	NA	1.283669778	1	0	0.716330222	2	0	0.283669778	unphased	1.371480641	1.371480641	1	0	0.99375	0.00625	0	2	5.55E-16	1	1	1	NA	NA	NA	NA
1351289	1206546703	PD9774b	12	39134980	C	A	CPNE8	CCDS8733.1	r.?	-	-	intronic	44	0	0	47	8	17.0212766	0	0	NA	0	0	NA	0.857682244	0	0	0.142317756	1	0	0.857682244	unphased	0.903709812	1.053665059	0.857682244	0	1	0	0	2	1.03E-10	1	1	1	NA	NA	NA	NA
1351289	1206546736	PD9774b	12	39581234	C	A	-	-	-	-	-	-	37	0	0	49	8	16.32653061	0	0	NA	0	0	NA	0.857682244	0	0	0.142317756	1	0	0.857682244	unphased	0.866823698	1.010658322	0.857682244	0.0025	0.9975	0	0	2	1.47E-10	1	1	1	NA	NA	NA	NA
1351289	1206546866	PD9774b	12	40974953	C	A	-	-	-	-	-	-	31	0	0	51	10	19.60784314	0	0	NA	0	0	NA	0.857682244	0	0	0.142317756	1	0	0.857682244	unphased	1.041038264	1.041038264	1	0.00125	0.9975	0.00125	0	2	1.04E-13	1	1	1	NA	NA	NA	NA
1351289	1206547050	PD9774b	12	43193008	C	A	-	-	-	-	-	-	33	0	0	49	6	12.24489796	0	0	NA	0	0	NA	0.857682244	0	0	0.142317756	1	0	0.857682244	unphased	0.650117773	0.757993741	0.857682244	0.00125	0.99875	0	0	2	1.82E-07	1	1	1	NA	NA	NA	NA
1351289	1206547150	PD9774b	12	44562950	G	A	TMEM117	CCDS8745.1	r.?	-	-	intronic	39	0	0	42	5	11.9047619	0	0	NA	0	0	NA	0.857682244	0	0	0.142317756	1	0	0.857682244	unphased	0.632058946	0.73693836	0.857682244	0.00125	0.99875	0	0	2	2.28E-06	1	1	1	NA	NA	NA	NA
1351289	1206547440	PD9774b	12	48635715	G	A	-	-	-	-	-	-	24	0	0	41	8	19.51219512	0	0	NA	0	0	NA	0.857682244	0	0	0.142317756	1	0	0.857682244	unphased	1.035960029	1.035960029	1	0	1	0	0	2	3.22E-11	1	1	1	NA	NA	NA	NA
1351289	1206547761	PD9774b	12	52096979	G	A	SCN8A	CCDS44891.1	r.?	-	-	intronic	30	0	0	60	9	15	0	0	NA	0	0	NA	0.857682244	0	0	0.142317756	1	0	0.857682244	unphased	0.796394272	0.928542333	0.857682244	0	1	0	0	2	2.29E-11	1	1	1	NA	NA	NA	NA
1351289	1206548290	PD9774b	12	57548315	T	A	ENSG00000123384	CCDS8932.1	r.1524u>a	c.1058T>A	p.M353K	missense	31	0	0	43	8	18.60465116	241	2	0.829875519	79	12	15.18987342	0.857682244	0	0	0.142317756	1	0	0.857682244	unphased	0.987775841	0.987775841	1	0.00125	0.99875	0	0	2	4.85E-11	1	9.17E-15	0.339364268	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206548529	PD9774b	12	60683423	C	A	-	-	-	-	-	-	34	0	0	50	10	20	0	0	NA	0	0	NA	0.857682244	0	0	0.142317756	1	0	0.857682244	unphased	1.061859029	1.061859029	1	0.00125	0.9975	0.00125	0	2	8.36E-14	1	1	1	NA	NA	NA	NA
1351289	1206548627	PD9774b	12	62404162	C	A	FAM19A2	CCDS8962.1	r.?	-	-	intronic	28	0	0	21	4	19.04761905	0	0	NA	0	0	NA	0.857682244	0	0	0.142317756	1	0	0.857682244	unphased	1.011294314	1.011294314	1	0	1	0	0	2	3.49E-06	1	1	1	NA	NA	NA	NA
1351289	1206548696	PD9774b	12	63319972	G	A	PPM1H	CCDS44934.1	r.?	-	-	intronic	42	0	0	52	8	15.38461538	0	0	NA	0	0	NA	0.857682244	0	0	0.142317756	1	0	0.857682244	unphased	0.816814638	0.952351111	0.857682244	0.00125	0.99875	0	0	2	2.42E-10	1	1	1	NA	NA	NA	NA
1351289	1206548861	PD9774b	12	64956592	G	A	-	-	-	-	-	-	37	0	0	49	5	10.20408163	0	0	NA	0	0	NA	0.857682244	0	0	0.142317756	1	0	0.857682244	unphased	0.541764811	0.631661451	0.857682244	0.00375	0.99625	0	0	2	4.96E-06	1	1	1	NA	NA	NA	NA
1351289	1206548905	PD9774b	12	65733470	G	A	MSRB3	CCDS31853.1	r.?	-	-	intronic	50	0	0	49	9	18.36734694	0	0	NA	0	0	NA	0.857682244	0	0	0.142317756	1	0	0.857682244	unphased	0.97517666	0.97517666	1	0	0.99875	0.00125	0	2	3.35E-12	1	1	1	NA	NA	NA	NA
1351289	1206548914	PD9774b	12	66055638	G	A	-	-	-	-	-	-	26	0	0	42	7	16.66666667	0	0	NA	0	0	NA	0.857682244	0	0	0.142317756	1	0	0.857682244	unphased	0.884882525	1.031713703	0.857682244	0.00125	0.9975	0.00125	0	2	1.81E-09	1	1	1	NA	NA	NA	NA
1351289	1206548935	PD9774b	12	66313601	G	A	HMGA2	CCDS44936.1	r.?	-	-	intronic	41	0	0	55	7	12.72727273	0	0	NA	0	0	NA	0.857682244	0	0	0.142317756	1	0	0.857682244	unphased	0.675728473	0.787854101	0.857682244	0	1	0	0	2	1.28E-08	1	1	1	NA	NA	NA	NA
1351289	1206549153	PD9774b	12	69172443	G	A	-	-	-	-	-	-	37	0	0	40	8	20	0	0	NA	0	0	NA	0.857682244	0	0	0.142317756	1	0	0.857682244	unphased	1.061859029	1.061859029	1	0.00125	0.99875	0	0	2	2.61E-11	1	1	1	NA	NA	NA	NA
1351289	1206549274	PD9774b	12	70317383	C	A	-	-	-	-	-	-	50	0	0	58	6	10.34482759	0	0	NA	0	0	NA	1.713202838	1	0	0.286797162	2	0	0.713202838	unphased	0.637739559	0.894191001	0.713202838	0	1	0	0	2	5.06E-07	1	1	1	NA	NA	NA	NA
1351289	1206549280	PD9774b	12	70365834	G	A	-	-	-	-	-	-	34	0	0	53	15	28.30188679	0	0	NA	0	0	NA	1.713202838	1	0	0.286797162	2	0	0.713202838	unphased	1.744759172	1.018419497	1.713202838	0	1	0	0	2	1.60E-22	1	1	1	NA	NA	NA	NA
1351289	1206549287	PD9774b	12	70427271	C	A	-	-	-	-	-	-	39	0	0	51	13	25.49019608	0	0	NA	0	0	NA	1.713202838	1	0	0.286797162	2	0	0.713202838	unphased	1.57142362	1.57142362	1	0	0.9825	0.0175	0	2	4.87E-19	1	1	1	NA	NA	NA	NA
1351289	1206549462	PD9774b	12	72914428	G	A	TRHDE	CCDS9004.1	r.?	-	-	intronic	36	0	0	46	12	26.08695652	0	0	NA	0	0	NA	0.853446383	0	0	0.146553617	1	0	0.853446383	unphased	1.383928509	1.383928509	1	0	0.99625	0.00375	0	2	8.12E-18	1	1	1	NA	NA	NA	NA
1351289	1206549557	PD9774b	12	74181696	T	A	-	-	-	-	-	-	43	0	0	45	9	20	2	0	0	0	0	NA	0.853446383	0	0	0.146553617	1	0	0.853446383	unphased	1.061011857	1.061011857	1	0	1	0	0	2	1.47E-12	1	1	1	NA	NA	NA	NA
1351289	1206549774	PD9774b	12	77376718	G	A	-	-	-	-	-	-	38	0	0	41	9	21.95121951	0	0	NA	0	0	NA	0.853446383	0	0	0.146553617	1	0	0.853446383	unphased	1.164525209	1.164525209	1	0.00125	0.99875	0	0	2	5.92E-13	1	1	1	NA	NA	NA	NA
1351289	1206549855	PD9774b	12	78838810	G	A	-	-	-	-	-	-	32	0	0	59	10	16.94915254	0	0	NA	0	0	NA	0.853446383	0	0	0.146553617	1	0	0.853446383	unphased	0.899162591	1.053566585	0.853446383	0.00125	0.99875	0	0	2	4.91E-13	1	1	1	NA	NA	NA	NA
1351289	1206550033	PD9774b	12	81615569	G	A	ACSS3	CCDS9022.1	r.?	-	-	intronic	35	0	0	48	7	14.58333333	0	0	NA	0	0	NA	0.853446383	0	0	0.146553617	1	0	0.853446383	unphased	0.773654479	0.906506249	0.853446383	0	1	0	0	2	4.81E-09	1	1	1	NA	NA	NA	NA
1351289	1206550160	PD9774b	12	83333160	G	A	TMTC2	CCDS9025.1	r.?	-	-	intronic	33	0	0	41	5	12.19512195	0	0	NA	0	0	NA	0.853446383	0	0	0.146553617	1	0	0.853446383	unphased	0.646958449	0.758054006	0.853446383	0.005	0.995	0	0	2	2.02E-06	1	1	1	NA	NA	NA	NA
1351289	1206550214	PD9774b	12	84264981	C	A	-	-	-	-	-	-	50	0	0	44	11	25	0	0	NA	0	0	NA	0.853446383	0	0	0.146553617	1	0	0.853446383	unphased	1.326264821	1.326264821	1	0	0.99875	0.00125	0	2	3.22E-16	1	1	1	NA	NA	NA	NA
1351289	1206550388	PD9774b	12	86758647	G	A	-	-	-	-	-	-	30	0	0	39	9	23.07692308	0	0	NA	0	0	NA	0.853446383	0	0	0.146553617	1	0	0.853446383	unphased	1.224244451	1.224244451	1	0	0.99875	0.00125	0	2	3.62E-13	1	1	1	NA	NA	NA	NA
1351289	1206550454	PD9774b	12	87508391	G	A	-	-	-	-	-	-	33	0	0	50	10	20	0	0	NA	0	0	NA	0.853446383	0	0	0.146553617	1	0	0.853446383	unphased	1.061011857	1.061011857	1	0	0.9975	0.0025	0	2	8.36E-14	1	1	1	NA	NA	NA	NA
1351289	1206550467	PD9774b	12	87585814	C	A	-	-	-	-	-	-	13	0	0	26	5	19.23076923	0	0	NA	0	0	NA	0.853446383	0	0	0.146553617	1	0	0.853446383	unphased	1.020203709	1.020203709	1	0.00375	0.99625	0	0	2	1.88E-07	1	1	1	NA	NA	NA	NA
1351289	1206550877	PD9774b	12	93419040	C	A	-	-	-	-	-	-	29	0	0	46	5	10.86956522	0	0	NA	0	0	NA	0.853446383	0	0	0.146553617	1	0	0.853446383	unphased	0.576636879	0.675656832	0.853446383	0.00375	0.99625	0	0	2	3.61E-06	1	1	1	NA	NA	NA	NA
1351289	1206550959	PD9774b	12	94498418	G	A	-	-	-	-	-	-	38	0	0	56	13	23.21428571	0	0	NA	0	0	NA	0.853446383	0	0	0.146553617	1	0	0.853446383	unphased	1.23153162	1.23153162	1	0	0.99875	0.00125	0	2	1.89E-18	1	1	1	NA	NA	NA	NA
1351289	1206550996	PD9774b	12	95084499	G	A	-	-	-	-	-	-	32	0	0	47	6	12.76595745	0	0	NA	0	0	NA	0.853446383	0	0	0.146553617	1	0	0.853446383	unphased	0.677241611	0.793537385	0.853446383	0.0025	0.9975	0	0	2	1.41E-07	1	1	1	NA	NA	NA	NA
1351289	1206551025	PD9774b	12	95576125	C	A	FGD6	CCDS31878.1	r.?	-	-	intronic	36	0	0	32	7	21.875	0	0	NA	0	0	NA	0.853446383	0	0	0.146553617	1	0	0.853446383	unphased	1.160481719	1.160481719	1	0	0.9975	0.0025	0	2	2.36E-10	1	1	1	NA	NA	NA	NA
1351289	1206551669	PD9774b	12	104101226	C	A	STAB2	CCDS31888.1	r.?	-	-	intronic	43	0	0	46	4	8.695652174	0	0	NA	0	0	NA	0.853446383	0	0	0.146553617	1	0	0.853446383	unphased	0.461309503	0.540525465	0.853446383	0.00375	0.99625	0	0	2	8.62E-05	1	1	1	NA	NA	NA	NA
1351289	1206551905	PD9774b	12	107677819	G	A	-	-	-	-	-	-	40	0	0	49	8	16.32653061	0	0	NA	0	0	NA	0.853446383	0	0	0.146553617	1	0	0.853446383	unphased	0.866132128	1.014864139	0.853446383	0.0025	0.99625	0.00125	0	2	1.47E-10	1	1	1	NA	NA	NA	NA
1351289	1206551917	PD9774b	12	107886458	C	A	BTBD11	CCDS31893.1	r.?	-	-	intronic	29	0	0	48	10	20.83333333	0	0	NA	0	0	NA	0.853446383	0	0	0.146553617	1	0	0.853446383	unphased	1.105220685	1.105220685	1	0	0.9975	0.0025	0	2	5.37E-14	1	1	1	NA	NA	NA	NA
1351289	1206552147	PD9774b	12	110674474	C	A	-	-	-	-	-	-	28	0	0	46	7	15.2173913	0	0	NA	0	0	NA	0.853446383	0	0	0.146553617	1	0	0.853446383	unphased	0.80729163	0.945919564	0.853446383	0	0.99875	0.00125	0	2	3.53E-09	1	1	1	NA	NA	NA	NA
1351289	1206552470	PD9774b	12	114841588	G	A	TBX5	CCDS9173.1	r.783c>u	c.116C>T	p.P39L	missense	32	0	0	30	4	13.33333333	1	0	0	0	0	NA	0.853446383	0	0	0.146553617	1	0	0.853446383	unphased	0.707341238	0.828805714	0.853446383	0.0025	0.99625	0.00125	0	2	1.54E-05	1	1	1	NA	NA	NA	NA
1351289	1206552775	PD9774b	12	118952254	C	A	-	-	-	-	-	-	31	0	0	36	11	30.55555556	0	0	NA	0	0	NA	0.853446383	0	0	0.146553617	1	0	0.853446383	unphased	1.620990337	1.620990337	1	0	0.98875	0.01125	0	2	2.62E-17	1	1	1	NA	NA	NA	NA
1351289	1206552944	PD9774b	12	120964968	G	A	COQ5	CCDS31912.1	r.?	-	-	intronic	22	0	0	38	5	13.15789474	0	0	NA	0	0	NA	0.853446383	0	0	0.146553617	1	0	0.853446383	unphased	0.698034117	0.817900375	0.853446383	0	1	0	0	2	1.37E-06	1	1	1	NA	NA	NA	NA
1351289	1206553436	PD9774b	12	125677464	G	A	-	-	-	-	-	-	34	0	0	55	5	9.090909091	0	0	NA	0	0	NA	0.853446383	0	0	0.146553617	1	0	0.853446383	unphased	0.482278117	0.565094805	0.853446383	0.0075	0.9925	0	0	2	8.83E-06	1	1	1	NA	NA	NA	NA
1351289	1206553530	PD9774b	12	127069200	T	A	-	-	-	-	-	-	35	0	0	53	7	13.20754717	0	0	NA	0	0	NA	0.853446383	0	0	0.146553617	1	0	0.853446383	unphased	0.700668208	0.820986792	0.853446383	0.0025	0.9975	0	0	2	9.85E-09	1	1	1	NA	NA	NA	NA
1351289	1206553653	PD9774b	12	128318245	G	A	-	-	-	-	-	-	34	0	0	41	7	17.07317073	0	0	NA	0	0	NA	0.853446383	0	0	0.146553617	1	0	0.853446383	unphased	0.905741829	1.061275609	0.853446383	0	1	0	0	2	1.51E-09	1	1	1	NA	NA	NA	NA
1351289	1206553664	PD9774b	12	128333732	G	A	-	-	-	-	-	-	30	0	0	46	6	13.04347826	0	0	NA	0	0	NA	0.853446383	0	0	0.146553617	1	0	0.853446383	unphased	0.691964255	0.810788198	0.853446383	0.0075	0.9925	0	0	2	1.23E-07	1	1	1	NA	NA	NA	NA
1351289	1206553720	PD9774b	12	128753598	C	A	-	-	-	-	-	-	16	0	0	14	4	28.57142857	0	0	NA	0	0	NA	0.853446383	0	0	0.146553617	1	0	0.853446383	unphased	1.515731225	1.515731225	1	0.0025	0.99	0.0075	0	2	6.01E-07	1	1	1	NA	NA	NA	NA
1351289	1206553787	PD9774b	12	129378114	T	A	GLT1D1	CCDS9265.1	r.?	-	-	intronic	34	0	0	42	8	19.04761905	0	0	NA	0	0	NA	0.853446383	0	0	0.146553617	1	0	0.853446383	unphased	1.010487483	1.010487483	1	0.00125	0.9975	0.00125	0	2	3.96E-11	1	1	1	NA	NA	NA	NA
1351289	1206553895	PD9774b	12	130382614	G	A	TMEM132D	CCDS9266.1	r.?	-	-	intronic	39	0	0	63	14	22.22222222	0	0	NA	0	0	NA	0.853446383	0	0	0.146553617	1	0	0.853446383	unphased	1.178902064	1.178902064	1	0	0.99875	0.00125	0	2	1.81E-19	1	1	1	NA	NA	NA	NA
1351289	1206554142	PD9774b	12	132104804	C	A	-	-	-	-	-	-	30	0	0	32	4	12.5	0	0	NA	0	0	NA	0.853446383	0	0	0.146553617	1	0	0.853446383	unphased	0.663132411	0.777005356	0.853446383	0	0.99875	0.00125	0	2	2.01E-05	1	1	1	NA	NA	NA	NA
1351289	1206555217	PD9774b	13	23821479	C	A	SGCG	CCDS9299.1	r.?	-	-	intronic	44	0	0	38	5	13.15789474	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.58573854	0.58573854	1	0.0025	0.9975	0	0	2	1.37E-06	1	1	1	NA	NA	NA	NA
1351289	1206555436	PD9774b	13	25799677	T	A	-	-	-	-	-	-	29	0	0	61	5	8.196721311	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.364886304	0.364886304	1	0.04625	0.95375	0	0	2	1.47E-05	1	1	1	NA	NA	NA	NA
1351289	1206555611	PD9774b	13	27791950	G	A	-	-	-	-	-	-	34	0	0	35	4	11.42857143	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.50875576	0.50875576	1	0.01375	0.98625	0	0	2	2.89E-05	1	1	1	NA	NA	NA	NA
1351289	1206555747	PD9774b	13	29411899	C	A	-	-	-	-	-	-	38	0	0	42	6	14.28571429	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.6359447	0.6359447	1	0.00375	0.99625	0	0	2	7.02E-08	1	1	1	NA	NA	NA	NA
1351289	1206555850	PD9774b	13	30607139	C	A	-	-	-	-	-	-	32	0	0	47	6	12.76595745	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.568291009	0.568291009	1	0.00875	0.99125	0	0	2	1.41E-07	1	1	1	NA	NA	NA	NA
1351289	1206555905	PD9774b	13	31151920	C	A	HMGB1	CCDS9335.1	r.?	-	-	intronic	40	0	0	44	10	22.72727273	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	1.011730205	1.011730205	1	0.0025	0.9975	0	0	2	2.08E-14	1	1	1	NA	NA	NA	NA
1351289	1206555965	PD9774b	13	31894208	C	A	B3GALTL	CCDS9341.1	r.?	-	-	intronic	44	0	0	44	5	11.36363636	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.505865103	0.505865103	1	0.01375	0.98625	0	0	2	2.88E-06	1	1	1	NA	NA	NA	NA
1351289	1206556108	PD9774b	13	33801649	C	A	STARD13	CCDS9350.1	r.?	-	-	intronic	26	0	0	40	4	10	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.44516129	0.44516129	1	0.01875	0.98125	0	0	2	4.95E-05	1	1	1	NA	NA	NA	NA
1351289	1206556198	PD9774b	13	35233319	G	A	-	-	-	-	-	-	37	0	0	57	6	10.52631579	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.468590832	0.468590832	1	0.025	0.975	0	0	2	4.56E-07	1	1	1	NA	NA	NA	NA
1351289	1206556392	PD9774b	13	38118721	G	A	-	-	-	-	-	-	29	0	0	49	8	16.32653061	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.726793943	0.726793943	1	0.00375	0.99625	0	0	2	1.47E-10	1	1	1	NA	NA	NA	NA
1351289	1206557345	PD9774b	13	51181055	C	A	-	-	-	-	-	-	18	0	0	17	4	23.52941176	0	0	NA	0	0	NA	0.412209864	0	0	0.587790136	1	0	0.412209864	unphased	1.144428886	1.144428886	1	0.00125	0.9975	0.00125	0	2	1.41E-06	1	1	1	NA	NA	NA	NA
1351289	1206557364	PD9774b	13	51489189	G	A	RNASEH2B	CCDS9425.1	r.?	-	-	intronic	35	0	0	46	5	10.86956522	0	0	NA	0	0	NA	0.412209864	0	0	0.587790136	1	0	0.412209864	unphased	0.528676388	1.282541818	0.412209864	0.00125	0.995	0.00375	0	2	3.61E-06	1	1	1	NA	NA	NA	NA
1351289	1206557418	PD9774b	13	52359382	T	A	DHRS12	CCDS9430.1	r.?	-	-	intronic	39	0	0	34	5	14.70588235	0	0	NA	0	0	NA	0.412209864	0	0	0.587790136	1	0	0.412209864	unphased	0.715268054	0.715268054	1	0.0025	0.99625	0.00125	0	2	7.71E-07	1	1	1	NA	NA	NA	NA
1351289	1206557609	PD9774b	13	55950846	C	A	-	-	-	-	-	-	34	0	0	39	4	10.25641026	0	0	NA	0	0	NA	0.412209864	0	0	0.587790136	1	0	0.412209864	unphased	0.498853617	1.210193305	0.412209864	0.00125	0.99625	0.0025	0	2	4.47E-05	1	1	1	NA	NA	NA	NA
1351289	1206557752	PD9774b	13	58230254	C	A	PCDH17	CCDS31986.1	r.?	-	-	intronic	40	0	0	56	4	7.142857143	0	0	NA	0	0	NA	0.412209864	0	0	0.587790136	1	0	0.412209864	unphased	0.347415912	0.842813195	0.412209864	0.0025	0.9975	0	0	2	0.000186538	1	1	1	NA	NA	NA	NA
1351289	1206557864	PD9774b	13	60002229	C	A	-	-	-	-	-	-	44	0	0	58	8	13.79310345	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.751946607	0.751946607	1	0.00125	0.99875	0	0	2	5.99E-10	1	1	1	NA	NA	NA	NA
1351289	1206557889	PD9774b	13	60335542	G	A	DIAPH3	CCDS41898.1	r.?	-	-	intronic	27	0	0	38	6	15.78947368	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.860780985	0.860780985	1	0.00375	0.99625	0	0	2	3.76E-08	1	1	1	NA	NA	NA	NA
1351289	1206557978	PD9774b	13	61626959	G	A	-	-	-	-	-	-	47	0	0	35	4	11.42857143	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.623041475	0.623041475	1	0.0075	0.99125	0.00125	0	2	2.89E-05	1	1	1	NA	NA	NA	NA
1351289	1206558392	PD9774b	13	64065106	T	A	-	-	-	-	-	-	32	0	0	61	8	13.1147541	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.714965627	0.714965627	1	0.00375	0.99625	0	0	2	9.09E-10	1	1	1	NA	NA	NA	NA
1351289	1206558411	PD9774b	13	64374772	G	A	-	-	-	-	-	-	29	0	0	42	7	16.66666667	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.908602151	0.908602151	1	0.0025	0.9975	0	0	2	1.81E-09	1	1	1	NA	NA	NA	NA
1351289	1206558599	PD9774b	13	66776005	C	A	-	-	-	-	-	-	34	0	0	62	12	19.35483871	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.055150884	1.055150884	1	0.0025	0.9975	0	0	2	4.19E-16	1	1	1	NA	NA	NA	NA
1351289	1206558771	PD9774b	13	68502750	C	A	-	-	-	-	-	-	41	0	0	58	4	6.896551724	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.375973304	0.375973304	1	0.01625	0.98375	0	0	2	0.000213772	1	1	1	NA	NA	NA	NA
1351289	1206558781	PD9774b	13	68739414	C	A	-	-	-	-	-	-	30	0	0	51	7	13.7254902	211	0	0	124	7	5.64516129	1	1	0	1	NA	NA	NA	unphased	0.748260595	0.748260595	1	0.00125	0.99875	0	0	2	7.46E-09	1	3.53E-06	1	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206558825	PD9774b	13	69292308	C	A	-	-	-	-	-	-	27	0	0	43	4	9.302325581	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.507126782	0.507126782	1	0.0025	0.9975	0	0	2	6.60E-05	1	1	1	NA	NA	NA	NA
1351289	1206559061	PD9774b	13	71823067	T	A	-	-	-	-	-	-	36	0	0	49	6	12.24489796	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.667544437	0.667544437	1	0.0025	0.9975	0	0	2	1.82E-07	1	1	1	NA	NA	NA	NA
1351289	1206559260	PD9774b	13	74503330	T	A	KLF12	CCDS9449.1	r.?	-	-	intronic	36	0	0	54	8	14.81481481	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.807646356	0.807646356	1	0.00125	0.99875	0	0	2	3.31E-10	1	1	1	NA	NA	NA	NA
1351289	1206559319	PD9774b	13	75274618	G	A	-	-	-	-	-	-	30	0	0	53	7	13.20754717	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.720024346	0.720024346	1	0.0025	0.9975	0	0	2	9.85E-09	1	1	1	NA	NA	NA	NA
1351289	1206559333	PD9774b	13	75379661	G	A	-	-	-	-	-	-	34	0	0	36	5	13.88888889	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.757168459	0.757168459	1	0.00125	0.99875	0	0	2	1.04E-06	1	1	1	NA	NA	NA	NA
1351289	1206559431	PD9774b	13	76692386	T	A	-	-	-	-	-	-	36	0	0	57	9	15.78947368	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.860780985	0.860780985	1	0.00375	0.99625	0	0	2	1.42E-11	1	1	1	NA	NA	NA	NA
1351289	1206559772	PD9774b	13	81165841	C	A	-	-	-	-	-	-	45	0	0	41	5	12.19512195	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.664830842	0.664830842	1	0.005	0.995	0	0	2	2.02E-06	1	1	1	NA	NA	NA	NA
1351289	1206560145	PD9774b	13	86361580	T	A	-	-	-	-	-	-	17	0	0	36	4	11.11111111	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.605734767	0.605734767	1	0.00625	0.99375	0	0	2	3.24E-05	1	1	1	NA	NA	NA	NA
1351289	1206560296	PD9774b	13	88309225	T	A	-	-	-	-	-	-	36	0	0	40	13	32.5	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.771774194	1.771774194	1	0	0.9575	0.0425	0	2	1.30E-20	1	1	1	NA	NA	NA	NA
1351289	1206560369	PD9774b	13	89332736	T	A	-	-	-	-	-	-	30	0	0	46	7	15.2173913	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.829593268	0.829593268	1	0.00125	0.99875	0	0	2	3.53E-09	1	1	1	NA	NA	NA	NA
1351289	1206560372	PD9774b	13	89420296	G	A	-	-	-	-	-	-	28	0	0	43	13	30.23255814	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.648162041	1.648162041	1	0	0.975	0.025	0	2	3.88E-20	1	1	1	NA	NA	NA	NA
1351289	1206560384	PD9774b	13	89595832	C	A	-	-	-	-	-	-	35	0	0	45	8	17.77777778	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.969175627	0.969175627	1	0	1	0	0	2	7.14E-11	1	1	1	NA	NA	NA	NA
1351289	1206560453	PD9774b	13	90278434	T	A	-	-	-	-	-	-	39	0	0	41	7	17.07317073	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.930763179	0.930763179	1	0.00125	0.99875	0	0	2	1.51E-09	1	1	1	NA	NA	NA	NA
1351289	1206560495	PD9774b	13	90768025	T	A	-	-	-	-	-	-	37	0	0	50	5	10	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.54516129	0.54516129	1	0.01375	0.98625	0	0	2	5.49E-06	1	1	1	NA	NA	NA	NA
1351289	1206560532	PD9774b	13	91249348	T	A	-	-	-	-	-	-	38	0	0	63	7	11.11111111	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.605734767	0.605734767	1	0.00625	0.99375	0	0	2	3.38E-08	1	1	1	NA	NA	NA	NA
1351289	1206560602	PD9774b	13	92209119	C	A	GPC5	CCDS9468.1	r.?	-	-	intronic	31	0	0	38	7	18.42105263	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.004244482	1.004244482	1	0	1	0	0	2	8.61E-10	1	1	1	NA	NA	NA	NA
1351289	1206560612	PD9774b	13	92438847	G	A	GPC5	CCDS9468.1	r.?	-	-	intronic	28	0	0	42	11	26.19047619	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.427803379	1.427803379	1	0	0.995	0.005	0	2	1.81E-16	1	1	1	NA	NA	NA	NA
1351289	1206560835	PD9774b	13	95548306	T	A	AL139381.2	ENST00000505287	r.?	-	-	intronic	32	0	0	49	7	14.28571429	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.778801843	0.778801843	1	0.00125	0.99875	0	0	2	5.58E-09	1	1	1	NA	NA	NA	NA
1351289	1206561252	PD9774b	13	100769104	T	A	PCCA	CCDS9496.2	r.?	-	-	intronic	31	0	0	54	5	9.259259259	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.504778973	0.504778973	1	0.00625	0.9925	0.00125	0	2	8.06E-06	1	1	1	NA	NA	NA	NA
1351289	1206561269	PD9774b	13	100977926	C	A	PCCA	CCDS9496.2	r.?	-	-	intronic	36	0	0	48	12	25	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.362903226	1.362903226	1	0	0.99875	0.00125	0	2	1.44E-17	1	1	1	NA	NA	NA	NA
1351289	1206561292	PD9774b	13	101225059	G	A	A2LD1	CCDS45066.1	r.?	-	-	intronic	42	0	0	57	12	21.05263158	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.14770798	1.14770798	1	0	0.99875	0.00125	0	2	1.40E-16	1	1	1	NA	NA	NA	NA
1351289	1206561397	PD9774b	13	103019721	G	A	FGF14	CCDS9500.1	r.?	-	-	intronic	28	0	0	41	9	21.95121951	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.196695515	1.196695515	1	0.00125	0.9975	0.00125	0	2	5.92E-13	1	1	1	NA	NA	NA	NA
1351289	1206561645	PD9774b	13	106368675	T	A	-	-	-	-	-	-	30	0	0	42	8	19.04761905	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.038402458	1.038402458	1	0.00125	0.99875	0	0	2	3.96E-11	1	1	1	NA	NA	NA	NA
1351289	1206561758	PD9774b	13	107682368	T	A	-	-	-	-	-	-	28	0	0	51	8	15.68627451	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.855154965	0.855154965	1	0.00125	0.99875	0	0	2	2.05E-10	1	1	1	NA	NA	NA	NA
1351289	1206561956	PD9774b	13	110744530	G	A	-	-	-	-	-	-	26	0	0	51	10	19.60784314	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.068943707	1.068943707	1	0.00125	0.99875	0	0	2	1.04E-13	1	1	1	NA	NA	NA	NA
1351289	1206562179	PD9774b	13	113109118	C	A	-	-	-	-	-	-	25	0	0	38	6	15.78947368	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.860780985	0.860780985	1	0.00125	0.99875	0	0	2	3.76E-08	1	1	1	NA	NA	NA	NA
1351289	1206563776	PD9774b	14	22375072	C	A	-	-	-	-	-	-	35	0	0	48	8	16.66666667	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.075268817	1.075268817	1	0	1	0	0	2	1.23E-10	1	1	1	NA	NA	NA	NA
1351289	1206563782	PD9774b	14	22536100	T	A	TRAC	ENST00000446346	r.?	-	-	upstream	29	0	0	47	6	12.76595745	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.823610158	0.823610158	1	0.0025	0.9975	0	0	2	1.41E-07	1	1	1	NA	NA	NA	NA
1351289	1206563796	PD9774b	14	22685898	T	A	TRAC	ENST00000446346	r.?	-	-	intronic	24	0	0	46	8	17.39130435	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.122019635	1.122019635	1	0	0.99875	0.00125	0	2	8.61E-11	1	1	1	NA	NA	NA	NA
1351289	1206564159	PD9774b	14	26667629	T	A	-	-	-	-	-	-	33	0	0	49	4	8.163265306	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.526662278	0.526662278	1	0.0075	0.9925	0	0	2	0.000110643	1	1	1	NA	NA	NA	NA
1351289	1206564163	PD9774b	14	26714486	C	A	-	-	-	-	-	-	41	0	0	51	9	17.64705882	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.138519924	1.138519924	1	0	1	0	0	2	4.92E-12	1	1	1	NA	NA	NA	NA
1351289	1206564357	PD9774b	14	28385206	G	A	-	-	-	-	-	-	20	0	0	55	6	10.90909091	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.703812317	0.703812317	1	0.00375	0.99625	0	0	2	3.67E-07	1	1	1	NA	NA	NA	NA
1351289	1206564404	PD9774b	14	29062065	T	A	-	-	-	-	-	-	41	0	0	42	5	11.9047619	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.768049155	0.768049155	1	0	1	0	0	2	2.28E-06	1	1	1	NA	NA	NA	NA
1351289	1206564458	PD9774b	14	29999236	T	A	-	-	-	-	-	-	46	0	0	52	11	21.15384615	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.364764268	1.364764268	1	0	0.9975	0.0025	0	2	2.44E-15	1	1	1	NA	NA	NA	NA
1351289	1206564586	PD9774b	14	31827477	C	A	HEATR5A	CCDS45094.1	r.?	-	-	intronic	22	0	0	53	8	15.09433962	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.973828363	0.973828363	1	0.00125	0.99875	0	0	2	2.83E-10	1	1	1	NA	NA	NA	NA
1351289	1206564812	PD9774b	14	34658420	C	A	-	-	-	-	-	-	37	0	0	42	5	11.9047619	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.768049155	0.768049155	1	0.00375	0.995	0.00125	0	2	2.28E-06	1	1	1	NA	NA	NA	NA
1351289	1206565201	PD9774b	14	38666122	T	A	-	-	-	-	-	-	44	0	0	59	7	11.86440678	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.765445599	0.765445599	1	0.00375	0.99625	0	0	2	2.12E-08	1	1	1	NA	NA	NA	NA
1351289	1206565245	PD9774b	14	39230016	C	A	-	-	-	-	-	-	30	0	0	57	7	12.28070175	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.792303339	0.792303339	1	0.0025	0.9975	0	0	2	1.66E-08	1	1	1	NA	NA	NA	NA
1351289	1206565254	PD9774b	14	39396469	G	A	-	-	-	-	-	-	32	0	0	37	4	10.81081081	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.697471665	0.697471665	1	0.005	0.995	0	0	2	3.62E-05	1	1	1	NA	NA	NA	NA
1351289	1206565382	PD9774b	14	40646755	C	A	-	-	-	-	-	-	34	0	0	51	9	17.64705882	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.138519924	1.138519924	1	0	0.99625	0.00375	0	2	4.92E-12	1	1	1	NA	NA	NA	NA
1351289	1206565436	PD9774b	14	41386134	C	A	-	-	-	-	-	-	35	0	0	63	10	15.87301587	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.02406554	1.02406554	1	0.00125	0.99875	0	0	2	9.81E-13	1	1	1	NA	NA	NA	NA
1351289	1206565443	PD9774b	14	41520672	T	A	-	-	-	-	-	-	40	0	0	58	5	8.620689655	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.556173526	0.556173526	1	0.00125	0.99875	0	0	2	1.15E-05	1	1	1	NA	NA	NA	NA
1351289	1206565465	PD9774b	14	41749461	T	A	-	-	-	-	-	-	52	0	0	58	8	13.79310345	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.889877642	0.889877642	1	0	1	0	0	2	5.99E-10	1	1	1	NA	NA	NA	NA
1351289	1206565607	PD9774b	14	43303895	G	A	-	-	-	-	-	-	31	0	0	49	8	16.32653061	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.053324556	1.053324556	1	0.00125	0.99875	0	0	2	1.47E-10	1	1	1	NA	NA	NA	NA
1351289	1206565686	PD9774b	14	44154821	C	A	-	-	-	-	-	-	44	0	0	67	12	17.91044776	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.155512759	1.155512759	1	0	0.99875	0.00125	0	2	1.14E-15	1	1	1	NA	NA	NA	NA
1351289	1206565729	PD9774b	14	44610621	T	A	-	-	-	-	-	-	38	0	0	61	7	11.47540984	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.740349022	0.740349022	1	0.00125	0.99875	0	0	2	2.69E-08	1	1	1	NA	NA	NA	NA
1351289	1206565855	PD9774b	14	46716426	G	A	-	-	-	-	-	-	27	0	0	51	9	17.64705882	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.138519924	1.138519924	1	0	0.99875	0.00125	0	2	4.92E-12	1	1	1	NA	NA	NA	NA
1351289	1206565885	PD9774b	14	47022929	G	A	-	-	-	-	-	-	39	0	0	60	13	21.66666667	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.397849462	1.397849462	1	0	0.995	0.005	0	2	5.07E-18	1	1	1	NA	NA	NA	NA
1351289	1206566567	PD9774b	14	54909223	G	A	CNIH	CCDS9717.1	r.?	-	-	upstream	25	0	0	40	5	12.5	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.806451613	0.806451613	1	0	1	0	0	2	1.78E-06	1	1	1	NA	NA	NA	NA
1351289	1206567538	PD9774b	14	68457322	C	A	RAD51L1	CCDS9789.1	r.?	-	-	intronic	28	0	0	41	4	9.756097561	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.629425649	0.629425649	1	0.005	0.995	0	0	2	5.46E-05	1	1	1	NA	NA	NA	NA
1351289	1206568124	PD9774b	14	75791668	C	A	-	-	-	-	-	-	27	0	0	45	6	13.33333333	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.860215054	0.860215054	1	0	1	0	0	2	1.08E-07	1	1	1	NA	NA	NA	NA
1351289	1206568504	PD9774b	14	80930936	C	A	-	-	-	-	-	-	33	0	0	46	6	13.04347826	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.841514727	0.841514727	1	0.00125	0.9975	0.00125	0	2	1.23E-07	1	1	1	NA	NA	NA	NA
1351289	1206568581	PD9774b	14	82145863	C	A	-	-	-	-	-	-	36	0	0	22	3	13.63636364	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.879765396	0.879765396	1	0.00375	0.99625	0	0	2	0.000179267	1	1	1	NA	NA	NA	NA
1351289	1206568809	PD9774b	14	85251084	G	A	-	-	-	-	-	-	39	0	0	40	5	12.5	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.806451613	0.806451613	1	0.005	0.995	0	0	2	1.78E-06	1	1	1	NA	NA	NA	NA
1351289	1206568847	PD9774b	14	86115764	G	A	-	-	-	-	-	-	43	0	0	61	7	11.47540984	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.740349022	0.740349022	1	0.00375	0.99625	0	0	2	2.69E-08	1	1	1	NA	NA	NA	NA
1351289	1206568940	PD9774b	14	87140471	T	A	-	-	-	-	-	-	35	0	0	51	4	7.843137255	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.506008855	0.506008855	1	0.00875	0.99125	0	0	2	0.000129466	1	1	1	NA	NA	NA	NA
1351289	1206569093	PD9774b	14	89599906	T	A	-	-	-	-	-	-	29	0	0	30	3	10	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.64516129	0.64516129	1	0.00125	0.99875	0	0	2	0.000458697	1	1	1	NA	NA	NA	NA
1351289	1206569256	PD9774b	14	91487455	G	A	RPS6KA5	CCDS9893.1	r.?	-	-	intronic	33	0	0	53	6	11.32075472	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.730371272	0.730371272	1	0.0025	0.9975	0	0	2	2.93E-07	1	1	1	NA	NA	NA	NA
1351289	1206569261	PD9774b	14	91514955	G	A	RPS6KA5	CCDS9893.1	r.?	-	-	intronic	39	0	0	45	6	13.33333333	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.860215054	0.860215054	1	0.00125	0.99875	0	0	2	1.08E-07	1	1	1	NA	NA	NA	NA
1351289	1206569483	PD9774b	14	94093495	C	A	KIAA1409	CCDS9911.2	r.?	-	-	intronic	30	0	0	61	8	13.1147541	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.846113168	0.846113168	1	0.0025	0.9975	0	0	2	9.09E-10	1	1	1	NA	NA	NA	NA
1351289	1206569957	PD9774b	14	100967962	G	A	WDR25	CCDS32157.1	r.?	-	-	intronic	38	0	0	53	6	11.32075472	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.730371272	0.730371272	1	0.00375	0.99375	0.0025	0	2	2.93E-07	1	1	1	NA	NA	NA	NA
1351289	1206569995	PD9774b	14	101455025	T	A	SNORD114-31	ENST00000363219	r.?	-	-	upstream	32	0	0	54	8	14.81481481	2	0	0	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.955794504	0.955794504	1	0.00125	0.99875	0	0	2	3.31E-10	1	1	1	NA	NA	NA	NA
1351289	1206572535	PD9774b	15	20193041	C	A	-	-	-	-	-	-	40	0	0	57	9	15.78947368	0	0	NA	0	0	NA	1.455522118	1	0	0.544477882	1	1	0.455522118	unphased	0.93270553	0.93270553	1	0.00125	0.99875	0	0	2	1.42E-11	1	1	1	NA	NA	NA	NA
1351289	1206573110	PD9774b	15	22647422	T	A	-	-	-	-	-	-	13	0	0	11	4	36.36363636	0	0	NA	0	0	NA	1.455522118	1	0	0.544477882	1	1	0.455522118	unphased	2.148049099	2.148049099	1	0	0.9925	0.0075	0	2	2.01E-07	1	1	1	NA	NA	NA	NA
1351289	1206573290	PD9774b	15	23849619	G	A	-	-	-	-	-	-	43	0	0	48	12	25	0	0	NA	0	0	NA	1.455522118	1	0	0.544477882	1	1	0.455522118	unphased	1.476783755	1.476783755	1	0	0.98875	0.01125	0	2	1.44E-17	1	1	1	NA	NA	NA	NA
1351289	1206573295	PD9774b	15	23903029	T	A	-	-	-	-	-	-	29	0	0	55	7	12.72727273	0	0	NA	0	0	NA	1.455522118	1	0	0.544477882	1	1	0.455522118	unphased	0.751817185	0.751817185	1	0.00125	0.99875	0	0	2	1.28E-08	1	1	1	NA	NA	NA	NA
1351289	1206573349	PD9774b	15	24327034	C	A	-	-	-	-	-	-	48	0	0	53	7	13.20754717	0	0	NA	0	0	NA	1.455522118	1	0	0.544477882	1	1	0.455522118	unphased	0.780187644	0.780187644	1	0	1	0	0	2	9.85E-09	1	1	1	NA	NA	NA	NA
1351289	1206573433	PD9774b	15	24629321	T	A	-	-	-	-	-	-	21	0	0	57	10	17.54385965	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.956423316	0.956423316	1	0.00125	0.99875	0	0	2	3.40E-13	1	1	1	NA	NA	NA	NA
1351289	1206573469	PD9774b	15	24763788	G	A	-	-	-	-	-	-	35	0	0	63	6	9.523809524	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.519201229	0.519201229	1	0.01625	0.98375	0	0	2	8.32E-07	1	1	1	NA	NA	NA	NA
1351289	1206573532	PD9774b	15	25165789	G	A	SNRPN	CCDS10017.1	r.?	-	-	intronic	29	0	0	57	8	14.03508772	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.765138653	0.765138653	1	0	1	0	0	2	5.19E-10	1	1	1	NA	NA	NA	NA
1351289	1206573894	PD9774b	15	28875353	G	A	ENSG00000206149	ENST00000382946	r.?	-	-	upstream	17	0	0	18	5	27.77777778	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.792114695	1.792114695	1	0	0.99	0.01	0	2	2.54E-08	1	1	1	NA	NA	NA	NA
1351289	1206573895	PD9774b	15	28875357	G	A	ENSG00000206149	ENST00000382946	r.?	-	-	upstream	21	0	0	18	5	27.77777778	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.792114695	1.792114695	1	0.0025	0.99125	0.00625	0	2	2.54E-08	1	1	1	NA	NA	NA	NA
1351289	1206574427	PD9774b	15	34987939	T	A	-	-	-	-	-	-	42	0	0	47	8	17.0212766	0	0	NA	0	0	NA	0.769405399	0	0	0.230594601	1	0	0.769405399	unphased	0.888683966	0.888683966	1	0.0025	0.9975	0	0	2	1.03E-10	1	1	1	NA	NA	NA	NA
1351289	1206574607	PD9774b	15	37301057	G	A	MEIS2	CCDS45217.1	r.?	-	-	intronic	26	0	0	57	11	19.29824561	0	0	NA	0	0	NA	0.769405399	0	0	0.230594601	1	0	0.769405399	unphased	1.007564936	1.007564936	1	0	1	0	0	2	7.29E-15	1	1	1	NA	NA	NA	NA
1351289	1206574657	PD9774b	15	38021514	G	A	-	-	-	-	-	-	48	0	0	43	7	16.27906977	0	0	NA	0	0	NA	0.769405399	0	0	0.230594601	1	0	0.769405399	unphased	0.849933212	1.104662396	0.769405399	0	0.99875	0.00125	0	2	2.15E-09	1	1	1	NA	NA	NA	NA
1351289	1206574671	PD9774b	15	38244612	T	A	TMCO5A	CCDS10046.1	r.?	-	-	downstream	33	0	0	44	7	15.90909091	0	0	NA	0	0	NA	0.769405399	0	0	0.230594601	1	0	0.769405399	unphased	0.830616548	1.079556433	0.769405399	0	1	0	0	2	2.55E-09	1	1	1	NA	NA	NA	NA
1351289	1206575548	PD9774b	15	49705787	C	A	C15orf33	CCDS32237.1	r.?	-	-	intronic	38	0	0	44	5	11.36363636	0	0	NA	0	0	NA	0.769405399	0	0	0.230594601	1	0	0.769405399	unphased	0.593297534	0.771111738	0.769405399	0.0025	0.9975	0	0	2	2.88E-06	1	1	1	NA	NA	NA	NA
1351289	1206575966	PD9774b	15	55325372	G	A	-	-	-	-	-	-	42	0	0	48	7	14.58333333	0	0	NA	0	0	NA	0.769405399	0	0	0.230594601	1	0	0.769405399	unphased	0.761398502	0.989593396	0.769405399	0.0025	0.99625	0.00125	0	2	4.81E-09	1	1	1	NA	NA	NA	NA
1351289	1206575973	PD9774b	15	55408247	T	A	-	-	-	-	-	-	26	0	0	52	4	7.692307692	0	0	NA	0	0	NA	0.769405399	0	0	0.230594601	1	0	0.769405399	unphased	0.401616793	0.52198333	0.769405399	0.00875	0.99125	0	0	2	0.000139698	1	1	1	NA	NA	NA	NA
1351289	1206576512	PD9774b	15	62590945	C	A	-	-	-	-	-	-	28	0	0	51	9	17.64705882	0	0	NA	0	0	NA	0.769405399	0	0	0.230594601	1	0	0.769405399	unphased	0.921356171	0.921356171	1	0	0.99875	0.00125	0	2	4.92E-12	1	1	1	NA	NA	NA	NA
1351289	1206576914	PD9774b	15	67233692	C	A	-	-	-	-	-	-	28	0	0	42	6	14.28571429	0	0	NA	0	0	NA	0.769405399	0	0	0.230594601	1	0	0.769405399	unphased	0.745859758	0.969397613	0.769405399	0.00125	0.99875	0	0	2	7.02E-08	1	1	1	NA	NA	NA	NA
1351289	1206577596	PD9774b	15	76522938	G	A	ETFA	CCDS32299.1	r.?	-	-	intronic	30	0	0	30	4	13.33333333	0	0	NA	0	0	NA	0.769405399	0	0	0.230594601	1	0	0.769405399	unphased	0.696135774	0.904771105	0.769405399	0	1	0	0	2	1.54E-05	1	1	1	NA	NA	NA	NA
1351289	1206577627	PD9774b	15	76860462	C	A	SCAPER	ENST00000303521	r.?	-	-	intronic	35	0	0	36	4	11.11111111	0	0	NA	0	0	NA	0.769405399	0	0	0.230594601	1	0	0.769405399	unphased	0.580113145	0.753975921	0.769405399	0	1	0	0	2	3.24E-05	1	1	1	NA	NA	NA	NA
1351289	1206578007	PD9774b	15	82059270	T	A	-	-	-	-	-	-	46	0	0	47	6	12.76595745	0	0	NA	0	0	NA	0.769405399	0	0	0.230594601	1	0	0.769405399	unphased	0.666512975	0.866270207	0.769405399	0.00125	0.99875	0	0	2	1.41E-07	1	1	1	NA	NA	NA	NA
1351289	1206578046	PD9774b	15	82480749	C	A	EFTUD1	CCDS42071.1	r.?	-	-	intronic	47	0	0	50	4	8	0	0	NA	0	0	NA	0.769405399	0	0	0.230594601	1	0	0.769405399	unphased	0.417681464	0.542862663	0.769405399	0.0075	0.9925	0	0	2	0.000119787	1	1	1	NA	NA	NA	NA
1351289	1206578142	PD9774b	15	84285317	C	A	SH3GL3	CCDS10325.2	r.?	-	-	intronic	39	0	0	48	10	20.83333333	0	0	NA	0	0	NA	0.769405399	0	0	0.230594601	1	0	0.769405399	unphased	1.087712146	1.087712146	1	0	0.99875	0.00125	0	2	5.37E-14	1	1	1	NA	NA	NA	NA
1351289	1206578370	PD9774b	15	87576067	T	A	-	-	-	-	-	-	42	0	0	41	10	24.3902439	0	0	NA	0	0	NA	0.769405399	0	0	0.230594601	1	0	0.769405399	unphased	1.273419098	1.273419098	1	0.00125	0.9975	0.00125	0	2	9.51E-15	1	1	1	NA	NA	NA	NA
1351289	1206578410	PD9774b	15	88107750	T	A	-	-	-	-	-	-	36	0	0	43	5	11.62790698	0	0	NA	0	0	NA	0.769405399	0	0	0.230594601	1	0	0.769405399	unphased	0.607095151	0.789044569	0.769405399	0.0025	0.9975	0	0	2	2.57E-06	1	1	1	NA	NA	NA	NA
1351289	1206579104	PD9774b	15	96963029	G	A	-	-	-	-	-	-	36	0	0	43	6	13.95348837	0	0	NA	0	0	NA	0.769405399	0	0	0.230594601	1	0	0.769405399	unphased	0.728514182	0.946853482	0.769405399	0.005	0.995	0	0	2	8.13E-08	1	1	1	NA	NA	NA	NA
1351289	1206579151	PD9774b	15	97555483	C	A	-	-	-	-	-	-	36	0	0	51	9	17.64705882	0	0	NA	0	0	NA	0.769405399	0	0	0.230594601	1	0	0.769405399	unphased	0.921356171	0.921356171	1	0.005	0.99375	0.00125	0	2	4.92E-12	1	1	1	NA	NA	NA	NA
1351289	1206579166	PD9774b	15	97762369	C	A	-	-	-	-	-	-	27	0	0	38	11	28.94736842	0	0	NA	0	0	NA	0.769405399	0	0	0.230594601	1	0	0.769405399	unphased	1.511347403	1.511347403	1	0	0.9875	0.0125	0	2	5.19E-17	1	1	1	NA	NA	NA	NA
1351289	1206579176	PD9774b	15	97907937	C	A	-	-	-	-	-	-	29	0	0	35	9	25.71428571	0	0	NA	0	0	NA	0.769405399	0	0	0.230594601	1	0	0.769405399	unphased	1.342547564	1.342547564	1	0	0.995	0.005	0	2	1.23E-13	1	1	1	NA	NA	NA	NA
1351289	1206579231	PD9774b	15	98593978	G	A	-	-	-	-	-	-	22	0	0	45	10	22.22222222	0	0	NA	0	0	NA	0.769405399	0	0	0.230594601	1	0	0.769405399	unphased	1.160226289	1.160226289	1	0	0.99625	0.00375	0	2	2.66E-14	1	1	1	NA	NA	NA	NA
1351289	1206579257	PD9774b	15	98891365	C	A	-	-	-	-	-	-	31	0	0	57	5	8.771929825	0	0	NA	0	0	NA	0.769405399	0	0	0.230594601	1	0	0.769405399	unphased	0.457984062	0.595244148	0.769405399	0.005	0.995	0	0	2	1.05E-05	1	1	1	NA	NA	NA	NA
1351289	1206579865	PD9774b	16	1815947	G	A	MAPK8IP3	CCDS10442.2	r.?	-	-	intronic	40	0	0	42	7	16.66666667	0	0	NA	0	0	NA	1.176144945	1	0	0.823855055	2	0	0.176144945	unphased	0.937959641	0.937959641	1	0.0025	0.9975	0	0	2	1.81E-09	1	1	1	NA	NA	NA	NA
1351289	1206579900	PD9774b	16	2214973	G	A	TRAF7	CCDS10461.1	r.?	-	-	intronic	24	1	4.166666667	41	5	12.19512195	0	0	NA	0	0	NA	1.176144945	1	0	0.823855055	2	0	0.176144945	unphased	0.686311933	0.686311933	1	0.0025	0.9975	0	0	2	2.02E-06	0.113346489	1	1	NA	NA	NA	NA
1351289	1206580305	PD9774b	16	6666460	G	A	-	-	-	-	-	-	26	0	0	42	9	21.42857143	0	0	NA	0	0	NA	1.176144945	1	0	0.823855055	2	0	0.176144945	unphased	1.20594811	1.20594811	1	0	0.99875	0.00125	0	2	7.51E-13	1	1	1	NA	NA	NA	NA
1351289	1206580315	PD9774b	16	6721342	G	A	-	-	-	-	-	-	28	0	0	61	11	18.03278689	0	0	NA	0	0	NA	1.176144945	1	0	0.823855055	2	0	0.176144945	unphased	1.014841579	1.014841579	1	0	0.99875	0.00125	0	2	1.62E-14	1	1	1	NA	NA	NA	NA
1351289	1206580330	PD9774b	16	6872043	C	A	-	-	-	-	-	-	29	0	0	46	11	23.91304348	0	0	NA	0	0	NA	1.176144945	1	0	0.823855055	2	0	0.176144945	unphased	1.345768181	1.345768181	1	0	0.99375	0.00625	0	2	5.55E-16	1	1	1	NA	NA	NA	NA
1351289	1206580406	PD9774b	16	7466314	G	A	ENSG00000078328	CCDS45405.1	r.?	-	-	intronic	30	0	0	41	15	36.58536585	0	0	NA	0	0	NA	1.176144945	1	0	0.823855055	2	0	0.176144945	unphased	2.058935798	1.750579984	1.176144945	0	0.9425	0.0575	0	2	1.71E-24	1	1	1	NA	NA	NA	NA
1351289	1206580422	PD9774b	16	7608840	T	A	ENSG00000078328	CCDS45405.1	r.?	-	-	intronic	25	0	0	42	11	26.19047619	0	0	NA	0	0	NA	1.176144945	1	0	0.823855055	2	0	0.176144945	unphased	1.473936579	1.473936579	1	0	0.98875	0.01125	0	2	1.81E-16	1	1	1	NA	NA	NA	NA
1351289	1206580512	PD9774b	16	8501355	T	A	-	-	-	-	-	-	42	0	0	44	9	20.45454545	0	0	NA	0	0	NA	1.176144945	1	0	0.823855055	2	0	0.176144945	unphased	1.151132287	1.151132287	1	0.00125	0.9975	0.00125	0	2	1.18E-12	1	1	1	NA	NA	NA	NA
1351289	1206580742	PD9774b	16	10827274	C	A	-	-	-	-	-	-	39	0	0	39	14	35.8974359	0	0	NA	0	0	NA	1.176144945	1	0	0.823855055	2	0	0.176144945	unphased	2.020220766	1.717663095	1.176144945	0	0.95875	0.04125	0	2	8.19E-23	1	1	1	NA	NA	NA	NA
1351289	1206581178	PD9774b	16	15545084	T	A	C16orf45	CCDS10561.1	r.?	-	-	intronic	34	0	0	40	6	15	0	0	NA	0	0	NA	0.807308851	0	0	0.192691149	1	0	0.807308851	unphased	0.788838263	0.977120791	0.807308851	0.00125	0.99875	0	0	2	5.18E-08	1	1	1	NA	NA	NA	NA
1351289	1206581179	PD9774b	16	15545085	C	A	C16orf45	CCDS10561.1	r.?	-	-	intronic	36	0	0	39	6	15.38461538	0	0	NA	0	0	NA	0.807308851	0	0	0.192691149	1	0	0.807308851	unphased	0.809064885	1.002175171	0.807308851	0	1	0	0	2	4.43E-08	1	1	1	NA	NA	NA	NA
1351289	1206581530	PD9774b	16	19301531	C	A	-	-	-	-	-	-	27	0	0	54	6	11.11111111	1	0	0	0	0	NA	0.807308851	0	0	0.192691149	1	0	0.807308851	unphased	0.584324639	0.723793179	0.807308851	0.0025	0.9975	0	0	2	3.29E-07	1	1	1	NA	NA	NA	NA
1351289	1206581870	PD9774b	16	22600216	T	A	ENSG00000224154	ENST00000430965	r.?	-	-	intronic	66	0	0	91	9	9.89010989	0	0	NA	0	0	NA	0.807308851	0	0	0.192691149	1	0	0.807308851	unphased	0.520113141	0.644255467	0.807308851	0.01	0.99	0	0	2	1.06E-09	1	1	1	NA	NA	NA	NA
1351289	1206581919	PD9774b	16	23000209	C	A	-	-	-	-	-	-	32	0	0	54	6	11.11111111	0	0	NA	0	0	NA	0.807308851	0	0	0.192691149	1	0	0.807308851	unphased	0.584324639	0.723793179	0.807308851	0.005	0.995	0	0	2	3.29E-07	1	1	1	NA	NA	NA	NA
1351289	1206581946	PD9774b	16	23382305	G	A	SCNN1B	CCDS10609.1	r.?	-	-	intronic	27	0	0	49	9	18.36734694	0	0	NA	0	0	NA	0.807308851	0	0	0.192691149	1	0	0.807308851	unphased	0.965924404	0.965924404	1	0	1	0	0	2	3.35E-12	1	1	1	NA	NA	NA	NA
1351289	1206582061	PD9774b	16	24705773	G	A	-	-	-	-	-	-	33	0	0	47	12	25.53191489	0	0	NA	0	0	NA	0.807308851	0	0	0.192691149	1	0	0.807308851	unphased	1.342703427	1.342703427	1	0	0.9975	0.0025	0	2	1.09E-17	1	1	1	NA	NA	NA	NA
1351289	1206582137	PD9774b	16	25363770	T	A	-	-	-	-	-	-	23	0	0	32	6	18.75	0	0	NA	0	0	NA	0.807308851	0	0	0.192691149	1	0	0.807308851	unphased	0.986047829	0.986047829	1	0.00125	0.99875	0	0	2	1.27E-08	1	1	1	NA	NA	NA	NA
1351289	1206582376	PD9774b	16	28445822	G	A	-	-	-	-	-	-	21	0	0	43	10	23.25581395	0	0	NA	0	0	NA	1.570280508	1	0	0.429719492	1	1	0.570280508	unphased	1.400440328	1.400440328	1	0	0.9975	0.0025	0	2	1.61E-14	1	1	1	NA	NA	NA	NA
1351289	1206582397	PD9774b	16	28750025	G	A	EIF3C	CCDS10638.1	r.?	-	-	downstream	13	1	7.692307692	23	6	26.08695652	0	0	NA	0	0	NA	1.570280508	1	0	0.429719492	1	1	0.570280508	unphased	1.570928716	1.570928716	1	0	0.99625	0.00375	0	2	1.47E-09	0.063085307	1	1	NA	NA	NA	NA
1351289	1206582501	PD9774b	16	29721907	C	A	-	-	-	-	-	-	35	0	0	49	7	14.28571429	0	0	NA	0	0	NA	1.570280508	1	0	0.429719492	1	1	0.570280508	unphased	0.860270487	0.860270487	1	0.00125	0.9975	0.00125	0	2	5.58E-09	1	1	1	NA	NA	NA	NA
1351289	1206589102	PD9774b	16	34640806	C	A	ENSG00000237113	ENST00000425453	r.?	-	-	intronic	27	0	0	54	12	22.22222222	0	0	NA	1	0	0	1.570280508	1	0	0.429719492	1	1	0.570280508	unphased	1.338198536	1.338198536	1	0	1	0	0	2	6.90E-17	1	1	1	NA	NA	NA	NA
1351289	1206591190	PD9774b	16	49928543	G	A	-	-	-	-	-	-	28	0	0	57	9	15.78947368	0	0	NA	0	0	NA	1.570280508	1	0	0.429719492	1	1	0.570280508	unphased	0.950825275	0.950825275	1	0.00125	0.99875	0	0	2	1.42E-11	1	1	1	NA	NA	NA	NA
1351289	1206591468	PD9774b	16	52857823	C	A	ENSG00000227450	ENST00000430771	r.?	-	-	intronic	32	0	0	58	11	18.96551724	0	0	NA	0	0	NA	1.570280508	1	0	0.429719492	1	1	0.570280508	unphased	1.142083233	1.142083233	1	0	1	0	0	2	8.96E-15	1	1	1	NA	NA	NA	NA
1351289	1206591707	PD9774b	16	55682772	C	A	-	-	-	-	-	-	32	0	0	40	4	10	0	0	NA	0	0	NA	1.570280508	1	0	0.429719492	1	1	0.570280508	unphased	0.602189341	1.055952874	0.570280508	0	1	0	0	2	4.95E-05	1	1	1	NA	NA	NA	NA
1351289	1206591710	PD9774b	16	55731329	G	A	SLC6A2	CCDS10754.1	r.?	-	-	intronic	35	0	0	63	6	9.523809524	0	0	NA	0	0	NA	1.570280508	1	0	0.429719492	1	1	0.570280508	unphased	0.573513658	1.005669404	0.570280508	0.0025	0.9975	0	0	2	8.32E-07	1	1	1	NA	NA	NA	NA
1351289	1206592114	PD9774b	16	60297407	C	A	-	-	-	-	-	-	22	0	0	43	5	11.62790698	0	0	NA	0	0	NA	1.570280508	1	0	0.429719492	1	1	0.570280508	unphased	0.700220164	1.227852179	0.570280508	0.00125	0.99625	0.0025	0	2	2.57E-06	1	1	1	NA	NA	NA	NA
1351289	1206592179	PD9774b	16	61356490	G	A	-	-	-	-	-	-	21	0	0	44	9	20.45454545	0	0	NA	0	0	NA	1.570280508	1	0	0.429719492	1	1	0.570280508	unphased	1.231750925	1.231750925	1	0	0.99875	0.00125	0	2	1.18E-12	1	1	1	NA	NA	NA	NA
1351289	1206592251	PD9774b	16	62595299	G	A	-	-	-	-	-	-	44	0	0	54	9	16.66666667	0	0	NA	0	0	NA	1.570280508	1	0	0.429719492	1	1	0.570280508	unphased	1.003648902	1.003648902	1	0	1	0	0	2	8.48E-12	1	1	1	NA	NA	NA	NA
1351289	1206592359	PD9774b	16	63950408	T	A	-	-	-	-	-	-	38	0	0	50	5	10	0	0	NA	0	0	NA	1.570280508	1	0	0.429719492	1	1	0.570280508	unphased	0.602189341	1.055952874	0.570280508	0.00125	0.99875	0	0	2	5.49E-06	1	1	1	NA	NA	NA	NA
1351289	1206592583	PD9774b	16	67114341	G	A	CBFB	CCDS10827.1	r.?	-	-	intronic	28	0	0	49	15	30.6122449	0	0	NA	0	0	NA	1.570280508	1	0	0.429719492	1	1	0.570280508	unphased	1.843436758	1.843436758	1	0	0.92	0.08	0	2	4.10E-23	1	1	1	NA	NA	NA	NA
1351289	1206592814	PD9774b	16	69598964	C	A	MIR1538	CCDS10882.1	r.?	-	-	upstream	26	0	0	58	8	13.79310345	0	0	NA	0	0	NA	1.570280508	1	0	0.429719492	1	1	0.570280508	unphased	0.830605988	0.830605988	1	0.0025	0.9975	0	0	2	5.99E-10	1	1	1	NA	NA	NA	NA
1351289	1206592967	PD9774b	16	70626342	C	A	-	-	-	-	-	-	41	0	0	32	4	12.5	0	0	NA	0	0	NA	1.570280508	1	0	0.429719492	1	1	0.570280508	unphased	0.752736676	0.752736676	1	0.00125	0.99875	0	0	2	2.01E-05	1	1	1	NA	NA	NA	NA
1351289	1206593396	PD9774b	16	74676257	G	A	RFWD3	CCDS32486.1	r.?	-	-	intronic	37	0	0	53	7	13.20754717	0	0	NA	0	0	NA	1.570280508	1	0	0.429719492	1	1	0.570280508	unphased	0.795344413	0.795344413	1	0.00125	0.99875	0	0	2	9.85E-09	1	1	1	NA	NA	NA	NA
1351289	1206593526	PD9774b	16	76028297	C	A	-	-	-	-	-	-	28	0	0	61	5	8.196721311	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.52882073	0.52882073	1	0.0125	0.9875	0	0	2	1.47E-05	1	1	1	NA	NA	NA	NA
1351289	1206593531	PD9774b	16	76049627	G	A	-	-	-	-	-	-	36	0	0	47	7	14.89361702	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.960878518	0.960878518	1	0	1	0	0	2	4.12E-09	1	1	1	NA	NA	NA	NA
1351289	1206593692	PD9774b	16	78081898	G	A	-	-	-	-	-	-	23	0	0	36	5	13.88888889	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.896057348	0.896057348	1	0.00125	0.9975	0.00125	0	2	1.04E-06	1	1	1	NA	NA	NA	NA
1351289	1206593866	PD9774b	16	79935445	G	A	-	-	-	-	-	-	29	0	0	51	7	13.7254902	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.885515497	0.885515497	1	0	0.99875	0.00125	0	2	7.46E-09	1	1	1	NA	NA	NA	NA
1351289	1206593919	PD9774b	16	80258644	C	A	-	-	-	-	-	-	35	0	0	57	5	8.771929825	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.565930956	0.565930956	1	0.00875	0.99125	0	0	2	1.05E-05	1	1	1	NA	NA	NA	NA
1351289	1206593958	PD9774b	16	80751731	T	A	CDYL2	CCDS32493.1	r.?	-	-	intronic	38	0	0	56	6	10.71428571	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.69124424	0.69124424	1	0.0025	0.99625	0.00125	0	2	4.09E-07	1	1	1	NA	NA	NA	NA
1351289	1206594081	PD9774b	16	81827113	C	A	PLCG2	CCDS42204.1	r.?	-	-	intronic	23	0	0	40	10	25	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.612903226	1.612903226	1	0	0.9925	0.0075	0	2	7.22E-15	1	1	1	NA	NA	NA	NA
1351289	1206594270	PD9774b	16	83931123	G	A	MLYCD	CCDS42206.1	r.?	-	-	upstream	39	0	0	47	6	12.76595745	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.823610158	0.823610158	1	0.0025	0.9975	0	0	2	1.41E-07	1	1	1	NA	NA	NA	NA
1351289	1206594464	PD9774b	16	85625183	C	A	-	-	-	-	-	-	31	0	0	51	10	19.60784314	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.265022138	1.265022138	1	0	0.99875	0.00125	0	2	1.04E-13	1	1	1	NA	NA	NA	NA
1351289	1206594816	PD9774b	16	88606036	T	A	ZFPM1	CCDS32502.1	r.?	-	-	downstream	43	0	0	47	5	10.63829787	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.686341798	0.686341798	1	0.00125	0.99875	0	0	2	4.02E-06	1	1	1	NA	NA	NA	NA
1351289	1206594832	PD9774b	16	88711050	G	A	IL17C	CCDS42217.1	r.?	-	-	downstream	28	0	0	40	5	12.5	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.806451613	0.806451613	1	0.0025	0.99625	0.00125	0	2	1.78E-06	1	1	1	NA	NA	NA	NA
1351289	1206594930	PD9774b	16	89647062	G	A	CPNE7	CCDS10980.1	r.?	-	-	intronic	15	0	0	28	4	14.28571429	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.921658986	0.921658986	1	0.00125	0.99875	0	0	2	1.16E-05	1	1	1	NA	NA	NA	NA
1351289	1206594973	PD9774b	16	89933809	C	A	SPIRE2	CCDS32516.1	r.?	-	-	intronic	40	0	0	44	5	11.36363636	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.73313783	0.73313783	1	0.0025	0.9975	0	0	2	2.88E-06	1	1	1	NA	NA	NA	NA
1351289	1206596653	PD9774b	17	15172265	G	A	PMP22	CCDS11168.1	r.?	-	-	upstream	28	0	0	37	5	13.51351351	0	0	NA	0	0	NA	0.78531958	0	0	0.21468042	1	0	0.78531958	unphased	0.707693579	0.901153616	0.78531958	0.00125	0.99875	0	0	2	1.19E-06	1	1	1	NA	NA	NA	NA
1351289	1206596740	PD9774b	17	15987776	G	A	NCOR1	CCDS11175.1	r.?	-	-	intronic	42	0	0	58	6	10.34482759	0	0	NA	0	0	NA	0.78531958	0	0	0.21468042	1	0	0.78531958	unphased	0.541751636	0.68984863	0.78531958	0.005	0.995	0	0	2	5.06E-07	1	1	1	NA	NA	NA	NA
1351289	1206596978	PD9774b	17	17763745	C	A	TOM1L2	CCDS42270.1	r.?	-	-	intronic	26	0	0	46	8	17.39130435	0	0	NA	0	0	NA	0.78531958	0	0	0.21468042	1	0	0.78531958	unphased	0.910770867	0.910770867	1	0	1	0	0	2	8.61E-11	1	1	1	NA	NA	NA	NA
1351289	1206597124	PD9774b	17	19225866	C	A	EPN2	CCDS11203.1	r.?	-	-	intronic	37	0	0	45	9	20	0	0	NA	0	0	NA	0.78531958	0	0	0.21468042	1	0	0.78531958	unphased	1.047386497	1.047386497	1	0	1	0	0	2	1.47E-12	1	1	1	NA	NA	NA	NA
1351289	1206597135	PD9774b	17	19396722	G	A	-	-	-	-	-	-	41	0	0	36	7	19.44444444	0	0	NA	0	0	NA	0.78531958	0	0	0.21468042	1	0	0.78531958	unphased	1.018292427	1.018292427	1	0	1	0	0	2	5.74E-10	1	1	1	NA	NA	NA	NA
1351289	1206597378	PD9774b	17	20935901	G	A	USP22	CCDS42285.1	r.?	-	-	intronic	35	0	0	46	9	19.56521739	0	0	NA	0	0	NA	1.337843266	1	0	0.662156734	2	0	0.337843266	unphased	1.132719685	1.132719685	1	0	0.99875	0.00125	0	2	1.82E-12	1	1	1	NA	NA	NA	NA
1351289	1206600231	PD9774b	17	26230180	G	A	-	-	-	-	-	-	35	0	0	60	9	15	0	0	NA	0	0	NA	1.337843266	1	0	0.662156734	2	0	0.337843266	unphased	0.868418425	0.868418425	1	0.00125	0.99875	0	0	2	2.29E-11	1	1	1	NA	NA	NA	NA
1351289	1206600326	PD9774b	17	27392416	C	A	-	-	-	-	-	-	31	0	0	43	6	13.95348837	0	0	NA	0	0	NA	1.337843266	1	0	0.662156734	2	0	0.337843266	unphased	0.807831093	0.807831093	1	0.00125	0.99875	0	0	2	8.13E-08	1	1	1	NA	NA	NA	NA
1351289	1206600504	PD9774b	17	29404148	C	A	-	-	-	-	-	-	25	0	0	56	9	16.07142857	0	0	NA	0	0	NA	1.337843266	1	0	0.662156734	2	0	0.337843266	unphased	0.930448313	0.930448313	1	0.00125	0.99875	0	0	2	1.20E-11	1	1	1	NA	NA	NA	NA
1351289	1206600526	PD9774b	17	29748145	G	A	RAB11FIP4	CCDS11267.1	r.?	-	-	intronic	30	0	0	47	5	10.63829787	0	0	NA	0	0	NA	1.337843266	1	0	0.662156734	2	0	0.337843266	unphased	0.615899592	0.615899592	1	0.0075	0.9925	0	0	2	4.02E-06	1	1	1	NA	NA	NA	NA
1351289	1206600624	PD9774b	17	30552466	T	A	RHOT1	CCDS32610.1	r.3029u>a	c.?	p.?	3'UTR variant	35	0	0	46	4	8.695652174	0	0	NA	0	0	NA	1.337843266	1	0	0.662156734	2	0	0.337843266	unphased	0.503430971	1.490131733	0.337843266	0	0.99375	0.00625	0	2	8.62E-05	1	1	1	NA	NA	NA	NA
1351289	1206601011	PD9774b	17	35223266	C	A	-	-	-	-	-	-	38	1	2.631578947	52	12	23.07692308	0	0	NA	0	0	NA	1.337843266	1	0	0.662156734	2	0	0.337843266	unphased	1.336028347	1.336028347	1	0	0.99625	0.00375	0	2	4.19E-17	0.173434892	1	1	NA	NA	NA	NA
1351289	1206601682	PD9774b	17	41870986	G	A	-	-	-	-	-	-	34	0	0	58	10	17.24137931	0	0	NA	0	0	NA	1.337843266	1	0	0.662156734	2	0	0.337843266	unphased	0.998182098	0.998182098	1	0	1	0	0	2	4.10E-13	1	1	1	NA	NA	NA	NA
1351289	1206601820	PD9774b	17	43167821	C	A	NMT1	CCDS11494.1	r.?	-	-	intronic	32	0	0	40	6	15	0	0	NA	0	0	NA	1.337843266	1	0	0.662156734	2	0	0.337843266	unphased	0.868418425	0.868418425	1	0.0025	0.9975	0	0	2	5.18E-08	1	1	1	NA	NA	NA	NA
1351289	1206602227	PD9774b	17	45801826	G	A	-	-	-	-	-	-	32	0	0	46	12	26.08695652	0	0	NA	0	0	NA	1.359934568	1	0	0.640065432	2	0	0.359934568	unphased	1.516055862	1.516055862	1	0	0.99	0.01	0	2	8.12E-18	1	1	1	NA	NA	NA	NA
1351289	1206602330	PD9774b	17	46718681	G	A	-	-	-	-	-	-	30	0	0	43	5	11.62790698	0	0	NA	0	0	NA	1.359934568	1	0	0.640065432	2	0	0.359934568	unphased	0.675761334	0.675761334	1	0.00375	0.99625	0	0	2	2.57E-06	1	1	1	NA	NA	NA	NA
1351289	1206602443	PD9774b	17	47665004	G	A	-	-	-	-	-	-	25	0	0	39	14	35.8974359	148	0	0	65	8	12.30769231	1.359934568	1	0	0.640065432	2	0	0.359934568	unphased	2.086196528	1.534041841	1.359934568	0	0.98875	0.01125	0	2	8.19E-23	1	1.53E-09	1	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206602630	PD9774b	17	49812097	G	A	CA10	CCDS32684.1	r.?	-	-	intronic	21	0	0	44	9	20.45454545	0	0	NA	0	0	NA	1.359934568	1	0	0.640065432	2	0	0.359934568	unphased	1.188725619	1.188725619	1	0	0.995	0.005	0	2	1.18E-12	1	1	1	NA	NA	NA	NA
1351289	1206602657	PD9774b	17	50077598	G	A	CA10	CCDS32684.1	r.?	-	-	intronic	37	0	0	62	17	27.41935484	296	1	0.337837838	219	32	14.61187215	1.359934568	1	0	0.640065432	2	0	0.359934568	unphased	1.593488823	1.171739332	1.359934568	0	1	0	0	2	4.56E-25	1	2.58E-36	0.773205822	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206602803	PD9774b	17	52063874	C	A	-	-	-	-	-	-	44	0	0	39	10	25.64102564	0	0	NA	0	0	NA	1.359934568	1	0	0.640065432	2	0	0.359934568	unphased	1.490140377	1.490140377	1	0	0.995	0.005	0	2	5.44E-15	1	1	1	NA	NA	NA	NA
1351289	1206602915	PD9774b	17	53526183	G	A	-	-	-	-	-	-	34	0	0	43	8	18.60465116	0	0	NA	0	0	NA	1.359934568	1	0	0.640065432	2	0	0.359934568	unphased	1.081218134	1.081218134	1	0	0.99875	0.00125	0	2	4.85E-11	1	1	1	NA	NA	NA	NA
1351289	1206602959	PD9774b	17	54142339	G	A	-	-	-	-	-	-	37	0	0	46	9	19.56521739	0	0	NA	0	0	NA	1.359934568	1	0	0.640065432	2	0	0.359934568	unphased	1.137041897	1.137041897	1	0	0.99875	0.00125	0	2	1.82E-12	1	1	1	NA	NA	NA	NA
1351289	1206602969	PD9774b	17	54444502	C	A	ANKFN1	CCDS32686.1	r.?	-	-	intronic	42	0	0	64	10	15.625	0	0	NA	0	0	NA	1.359934568	1	0	0.640065432	2	0	0.359934568	unphased	0.908054292	0.908054292	1	0	1	0	0	2	1.16E-12	1	1	1	NA	NA	NA	NA
1351289	1206603083	PD9774b	17	56071467	G	A	AC015813.2	ENST00000414925	r.745c>u	-	-	non-coding variant	45	0	0	42	8	19.04761905	0	0	NA	0	0	NA	1.359934568	1	0	0.640065432	2	0	0.359934568	unphased	1.106961423	1.106961423	1	0.00125	0.99875	0	0	2	3.96E-11	1	1	1	NA	NA	NA	NA
1351289	1206603164	PD9774b	17	57030194	C	A	PPM1E	CCDS11613.1	r.?	-	-	intronic	26	0	0	45	7	15.55555556	0	0	NA	0	0	NA	1.359934568	1	0	0.640065432	2	0	0.359934568	unphased	0.904018496	0.904018496	1	0	0.99875	0.00125	0	2	3.00E-09	1	1	1	NA	NA	NA	NA
1351289	1206603247	PD9774b	17	57873902	G	A	TMEM49	CCDS11619.1	r.?	-	-	intronic	33	0	0	44	13	29.54545455	0	0	NA	0	0	NA	1.359934568	1	0	0.640065432	2	0	0.359934568	unphased	1.717048117	1.262596125	1.359934568	0	0.99625	0.00375	0	2	5.49E-20	1	1	1	NA	NA	NA	NA
1351289	1206603358	PD9774b	17	59138685	C	A	BCAS3	CCDS45749.1	r.?	-	-	intronic	32	0	0	58	19	32.75862069	0	0	NA	0	0	NA	1.359934568	1	0	0.640065432	2	0	0.359934568	unphased	1.903782792	1.39990764	1.359934568	0	0.99125	0.00875	0	2	1.50E-29	1	1	1	NA	NA	NA	NA
1351289	1206604012	PD9774b	17	65106143	T	A	HELZ	CCDS42374.1	r.?	-	-	intronic	45	0	0	84	5	5.952380952	0	0	NA	0	0	NA	2	2	0	1	NA	NA	NA	unphased	0.384024578	0.384024578	1	0.04125	0.95875	0	0	2	6.95E-05	1	1	1	NA	NA	NA	NA
1351289	1206604131	PD9774b	17	65984055	G	A	BPTF	CCDS11673.1	r.?	-	-	downstream	30	0	0	42	17	40.47619048	0	0	NA	0	0	NA	2	2	0	1	NA	NA	NA	unphased	2.611367127	1.305683564	2	0	0.9925	0.0075	0	2	1.73E-28	1	1	1	NA	NA	NA	NA
1351289	1206604401	PD9774b	17	68686785	G	A	-	-	-	-	-	-	25	0	0	63	6	9.523809524	0	0	NA	0	0	NA	2	2	0	1	NA	NA	NA	unphased	0.614439324	0.614439324	1	0	1	0	0	2	8.32E-07	1	1	1	NA	NA	NA	NA
1351289	1206604439	PD9774b	17	69030772	C	A	-	-	-	-	-	-	36	0	0	56	16	28.57142857	0	0	NA	0	0	NA	2	2	0	1	NA	NA	NA	unphased	1.843317972	0.921658986	2	0.00125	0.99875	0	0	2	5.26E-24	1	1	1	NA	NA	NA	NA
1351289	1206604646	PD9774b	17	70846547	C	A	SLC39A11	CCDS11690.1	r.?	-	-	intronic	27	0	0	46	10	21.73913043	0	0	NA	0	0	NA	2	2	0	1	NA	NA	NA	unphased	1.402524544	1.402524544	1	0.00125	0.995	0.00375	0	2	3.38E-14	1	1	1	NA	NA	NA	NA
1351289	1206605192	PD9774b	17	75417166	G	A	Sep-09	CCDS45791.1	r.?	-	-	intronic	32	0	0	47	8	17.0212766	0	0	NA	0	0	NA	2	2	0	1	NA	NA	NA	unphased	1.098146877	1.098146877	1	0	1	0	0	2	1.03E-10	1	1	1	NA	NA	NA	NA
1351289	1206605639	PD9774b	17	79328288	G	A	-	-	-	-	-	-	31	0	0	51	20	39.21568627	0	0	NA	0	0	NA	2	2	0	1	NA	NA	NA	unphased	2.530044276	1.265022138	2	0	0.99875	0.00125	0	2	6.38E-33	1	1	1	NA	NA	NA	NA
1351289	1206606008	PD9774b	18	221728	C	A	THOC1	CCDS45820.1	r.?	-	-	intronic	30	0	0	55	7	12.72727273	0	0	NA	0	0	NA	1.612613399	1	0	0.387386601	1	1	0.612613399	unphased	0.77181062	0.77181062	1	0.00125	0.99875	0	0	2	1.28E-08	1	1	1	NA	NA	NA	NA
1351289	1206606232	PD9774b	18	2968413	T	A	LPIN2	CCDS11829.1	r.?	-	-	intronic	33	0	0	52	8	15.38461538	0	0	NA	0	0	NA	1.612613399	1	0	0.387386601	1	1	0.612613399	unphased	0.932957893	0.932957893	1	0	1	0	0	2	2.42E-10	1	1	1	NA	NA	NA	NA
1351289	1206606406	PD9774b	18	4870441	G	A	-	-	-	-	-	-	31	0	0	41	5	12.19512195	0	0	NA	0	0	NA	1.612613399	1	0	0.387386601	1	1	0.612613399	unphased	0.739539793	1.207188406	0.612613399	0	0.99875	0.00125	0	2	2.02E-06	1	1	1	NA	NA	NA	NA
1351289	1206606417	PD9774b	18	4996238	T	A	-	-	-	-	-	-	44	0	0	73	7	9.589041096	0	0	NA	0	0	NA	1.612613399	1	0	0.387386601	1	1	0.612613399	unphased	0.581501152	0.949213897	0.612613399	0.0025	0.99625	0.00125	0	2	9.54E-08	1	1	1	NA	NA	NA	NA
1351289	1206606456	PD9774b	18	5555974	G	A	-	-	-	-	-	-	24	0	0	58	13	22.4137931	0	0	NA	0	0	NA	1.612613399	1	0	0.387386601	1	1	0.612613399	unphased	1.359223137	1.359223137	1	0	0.99375	0.00625	0	2	3.12E-18	1	1	1	NA	NA	NA	NA
1351289	1206606552	PD9774b	18	6893619	G	A	ARHGAP28	CCDS32785.1	r.?	-	-	intronic	34	0	0	58	11	18.96551724	0	0	NA	0	0	NA	1.612613399	1	0	0.387386601	1	1	0.612613399	unphased	1.150111885	1.150111885	1	0	0.9975	0.0025	0	2	8.96E-15	1	1	1	NA	NA	NA	NA
1351289	1206606614	PD9774b	18	7616111	G	A	PTPRM	CCDS11840.1	r.?	-	-	intronic	22	0	0	51	5	9.803921569	0	0	NA	0	0	NA	1.612613399	1	0	0.387386601	1	1	0.612613399	unphased	0.59453199	0.970484797	0.612613399	0.00375	0.99375	0.0025	0	2	6.06E-06	1	1	1	NA	NA	NA	NA
1351289	1206606637	PD9774b	18	7936009	T	A	PTPRM	CCDS11840.1	r.?	-	-	intronic	31	0	0	47	5	10.63829787	0	0	NA	0	0	NA	1.612613399	1	0	0.387386601	1	1	0.612613399	unphased	0.645130458	1.053079248	0.612613399	0	0.99875	0.00125	0	2	4.02E-06	1	1	1	NA	NA	NA	NA
1351289	1206606639	PD9774b	18	7956008	G	A	PTPRM	CCDS11840.1	r.?	-	-	intronic	34	0	0	48	7	14.58333333	0	0	NA	0	0	NA	1.612613399	1	0	0.387386601	1	1	0.612613399	unphased	0.884366336	0.884366336	1	0.00375	0.99625	0	0	2	4.81E-09	1	1	1	NA	NA	NA	NA
1351289	1206606741	PD9774b	18	9249096	G	A	ANKRD12	CCDS42411.1	r.?	-	-	intronic	26	0	0	33	4	12.12121212	0	0	NA	0	0	NA	1.612613399	1	0	0.387386601	1	1	0.612613399	unphased	0.735057734	1.199872112	0.612613399	0.00125	0.99625	0.0025	0	2	2.28E-05	1	1	1	NA	NA	NA	NA
1351289	1206606848	PD9774b	18	10702569	C	A	FAM38B	CCDS11850.1	r.?	-	-	upstream	38	0	0	54	7	12.96296296	0	0	NA	0	0	NA	1.612613399	1	0	0.387386601	1	1	0.612613399	unphased	0.78610341	0.78610341	1	0.0025	0.9975	0	0	2	1.13E-08	1	1	1	NA	NA	NA	NA
1351289	1206606939	PD9774b	18	11660427	G	A	-	-	-	-	-	-	28	0	0	61	6	9.836065574	0	0	NA	0	0	NA	1.612613399	1	0	0.387386601	1	1	0.612613399	unphased	0.596481276	0.973666714	0.612613399	0.00125	0.99875	0	0	2	6.85E-07	1	1	1	NA	NA	NA	NA
1351289	1206607666	PD9774b	18	15099867	T	A	-	-	-	-	-	-	27	0	0	36	3	8.333333333	0	0	NA	0	0	NA	1.612613399	1	0	0.387386601	1	1	0.612613399	unphased	0.505352192	0.824912077	0.612613399	0.0025	0.9975	0	0	2	0.000788827	1	1	1	NA	NA	NA	NA
1351289	1206607670	PD9774b	18	15113991	T	A	-	-	-	-	-	-	31	0	0	55	7	12.72727273	0	0	NA	0	0	NA	1.612613399	1	0	0.387386601	1	1	0.612613399	unphased	0.77181062	0.77181062	1	0.005	0.995	0	0	2	1.28E-08	1	1	1	NA	NA	NA	NA
1351289	1206609438	PD9774b	18	23339387	T	A	-	-	-	-	-	-	34	0	0	65	7	10.76923077	0	0	NA	0	0	NA	0.766536695	0	0	0.233463305	1	0	0.766536695	unphased	0.561954572	0.733108507	0.766536695	0.0025	0.9975	0	0	2	4.22E-08	1	1	1	NA	NA	NA	NA
1351289	1206609518	PD9774b	18	24245451	C	A	-	-	-	-	-	-	30	0	0	53	8	15.09433962	0	0	NA	0	0	NA	0.766536695	0	0	0.233463305	1	0	0.766536695	unphased	0.787645222	1.027537531	0.766536695	0	0.99875	0.00125	0	2	2.83E-10	1	1	1	NA	NA	NA	NA
1351289	1206609621	PD9774b	18	25687698	T	A	CDH2	CCDS11891.1	r.?	-	-	intronic	31	0	0	51	7	13.7254902	0	0	NA	0	0	NA	0.766536695	0	0	0.233463305	1	0	0.766536695	unphased	0.716216611	0.93435398	0.766536695	0.00125	0.99875	0	0	2	7.46E-09	1	1	1	NA	NA	NA	NA
1351289	1206609720	PD9774b	18	27098374	T	A	-	-	-	-	-	-	26	0	0	55	10	18.18181818	178	0	0	214	33	15.42056075	0.766536695	0	0	0.233463305	1	0	0.766536695	unphased	0.948754472	0.948754472	1	0	1	0	0	2	2.33E-13	1	3.30E-38	1	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206609760	PD9774b	18	27621258	G	A	-	-	-	-	-	-	30	0	0	54	8	14.81481481	0	0	NA	0	0	NA	0.766536695	0	0	0.233463305	1	0	0.766536695	unphased	0.7730592	1.008509058	0.766536695	0	1	0	0	2	3.31E-10	1	1	1	NA	NA	NA	NA
1351289	1206609768	PD9774b	18	27661141	C	A	-	-	-	-	-	-	37	0	0	47	11	23.40425532	0	0	NA	0	0	NA	0.766536695	0	0	0.233463305	1	0	0.766536695	unphased	1.221269055	1.221269055	1	0	0.99875	0.00125	0	2	7.21E-16	1	1	1	NA	NA	NA	NA
1351289	1206609794	PD9774b	18	27987772	T	A	-	-	-	-	-	-	35	0	0	47	5	10.63829787	0	0	NA	0	0	NA	0.766536695	0	0	0.233463305	1	0	0.766536695	unphased	0.555122298	0.724195334	0.766536695	0.00375	0.99625	0	0	2	4.02E-06	1	1	1	NA	NA	NA	NA
1351289	1206610013	PD9774b	18	31247727	T	A	ASXL3	CCDS45847.1	r.?	-	-	intronic	37	0	0	47	11	23.40425532	0	0	NA	0	0	NA	1.731976103	1	0	0.268023897	1	1	0.731976103	unphased	1.447222959	1.447222959	1	0	0.99	0.01	0	2	7.21E-16	1	1	1	NA	NA	NA	NA
1351289	1206610178	PD9774b	18	33646929	C	A	RPRD1A	CCDS11917.1	r.?	-	-	intronic	49	0	0	36	4	11.11111111	0	0	NA	0	0	NA	1.731976103	1	0	0.268023897	1	1	0.731976103	unphased	0.687065445	0.938644639	0.731976103	0	0.9975	0.0025	0	2	3.24E-05	1	1	1	NA	NA	NA	NA
1351289	1206610333	PD9774b	18	35949424	C	A	-	-	-	-	-	-	35	0	0	73	8	10.95890411	188	0	0	269	29	10.78066914	1.731976103	1	0	0.268023897	1	1	0.731976103	unphased	0.67765359	0.925786493	0.731976103	0.00375	0.995	0.00125	0	2	3.93E-09	1	4.00E-29	1	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206610424	PD9774b	18	36812987	G	A	AC105201.1	ENST00000510201	r.?	-	-	intronic	31	0	0	54	8	14.81481481	0	0	NA	0	0	NA	1.731976103	1	0	0.268023897	1	1	0.731976103	unphased	0.91608726	0.91608726	1	0.00125	0.9975	0.00125	0	2	3.31E-10	1	1	1	NA	NA	NA	NA
1351289	1206610449	PD9774b	18	37329224	T	A	AC105201.1	ENST00000510201	r.?	-	-	intronic	36	0	0	60	7	11.66666667	0	0	NA	0	0	NA	1.731976103	1	0	0.268023897	1	1	0.731976103	unphased	0.721418717	0.985576871	0.731976103	0.0025	0.99625	0.00125	0	2	2.39E-08	1	1	1	NA	NA	NA	NA
1351289	1206610718	PD9774b	18	40845072	C	A	SYT4	CCDS11922.1	r.?	-	-	downstream	37	0	0	49	5	10.20408163	0	0	NA	0	0	NA	1.731976103	1	0	0.268023897	1	1	0.731976103	unphased	0.63097847	0.862020587	0.731976103	0.005	0.995	0	0	2	4.96E-06	1	1	1	NA	NA	NA	NA
1351289	1206610773	PD9774b	18	41628055	C	A	-	-	-	-	-	-	34	0	0	50	4	8	0	0	NA	0	0	NA	1.731976103	1	0	0.268023897	1	1	0.731976103	unphased	0.494687121	0.67582414	0.731976103	0.00375	0.99625	0	0	2	0.000119787	1	1	1	NA	NA	NA	NA
1351289	1206610997	PD9774b	18	45011567	C	A	-	-	-	-	-	-	30	0	0	48	4	8.333333333	0	0	NA	0	0	NA	1.731976103	1	0	0.268023897	1	1	0.731976103	unphased	0.515299084	0.703983479	0.731976103	0.00125	0.9975	0.00125	0	2	0.000102016	1	1	1	NA	NA	NA	NA
1351289	1206611215	PD9774b	18	47428703	C	A	MYO5B	CCDS42436.1	r.?	-	-	intronic	26	0	0	58	12	20.68965517	0	0	NA	0	0	NA	1.731976103	1	0	0.268023897	1	1	0.731976103	unphased	1.279363243	1.279363243	1	0	0.99875	0.00125	0	2	1.76E-16	1	1	1	NA	NA	NA	NA
1351289	1206611397	PD9774b	18	50065970	G	A	DCC	CCDS11952.1	r.?	-	-	intronic	37	0	0	57	11	19.29824561	1	0	0	0	0	NA	1.731976103	1	0	0.268023897	1	1	0.731976103	unphased	1.193324194	1.193324194	1	0	0.99875	0.00125	0	2	7.29E-15	1	1	1	NA	NA	NA	NA
1351289	1206611477	PD9774b	18	50974205	C	A	DCC	CCDS11952.1	r.?	-	-	intronic	32	0	0	46	8	17.39130435	0	0	NA	0	0	NA	1.731976103	1	0	0.268023897	1	1	0.731976103	unphased	1.075406784	1.075406784	1	0.00375	0.995	0.00125	0	2	8.61E-11	1	1	1	NA	NA	NA	NA
1351289	1206611772	PD9774b	18	54993399	G	A	-	-	-	-	-	-	29	0	0	53	6	11.32075472	0	0	NA	0	0	NA	1.731976103	1	0	0.268023897	1	1	0.731976103	unphased	0.700028944	0.956354915	0.731976103	0.00125	0.9975	0.00125	0	2	2.93E-07	1	1	1	NA	NA	NA	NA
1351289	1206611783	PD9774b	18	55086511	T	A	-	-	-	-	-	-	35	0	0	50	7	14	0	0	NA	0	0	NA	1.731976103	1	0	0.268023897	1	1	0.731976103	unphased	0.865702461	0.865702461	1	0.0025	0.9975	0	0	2	6.46E-09	1	1	1	NA	NA	NA	NA
1351289	1206612025	PD9774b	18	57866435	T	A	-	-	-	-	-	-	42	0	0	38	4	10.52631579	0	0	NA	0	0	NA	1.731976103	1	0	0.268023897	1	1	0.731976103	unphased	0.650904106	0.889242289	0.731976103	0	0.99875	0.00125	0	2	4.03E-05	1	1	1	NA	NA	NA	NA
1351289	1206612104	PD9774b	18	59164684	G	A	CDH20	CCDS11977.1	r.?	-	-	intronic	38	0	0	55	10	18.18181818	0	0	NA	0	0	NA	1.731976103	1	0	0.268023897	1	1	0.731976103	unphased	1.12428891	1.12428891	1	0	1	0	0	2	2.33E-13	1	1	1	NA	NA	NA	NA
1351289	1206612220	PD9774b	18	60707607	G	A	-	-	-	-	-	-	31	0	0	61	7	11.47540984	0	0	NA	0	0	NA	1.731976103	1	0	0.268023897	1	1	0.731976103	unphased	0.709592181	0.969419873	0.731976103	0	1	0	0	2	2.69E-08	1	1	1	NA	NA	NA	NA
1351289	1206612320	PD9774b	18	62163609	G	A	-	-	-	-	-	-	23	0	0	49	5	10.20408163	0	0	NA	0	0	NA	1.731976103	1	0	0.268023897	1	1	0.731976103	unphased	0.63097847	0.862020587	0.731976103	0.0025	0.9975	0	0	2	4.96E-06	1	1	1	NA	NA	NA	NA
1351289	1206612402	PD9774b	18	63051085	T	A	-	-	-	-	-	-	28	0	0	41	5	12.19512195	0	0	NA	0	0	NA	1.731976103	1	0	0.268023897	1	1	0.731976103	unphased	0.75409622	1.030219726	0.731976103	0	0.99875	0.00125	0	2	2.02E-06	1	1	1	NA	NA	NA	NA
1351289	1206612538	PD9774b	18	64625433	C	A	-	-	-	-	-	-	36	0	0	71	9	12.67605634	0	0	NA	0	0	NA	1.731976103	1	0	0.268023897	1	1	0.731976103	unphased	0.783835226	1.070848109	0.731976103	0	0.99875	0.00125	0	2	1.10E-10	1	1	1	NA	NA	NA	NA
1351289	1206612560	PD9774b	18	64833936	G	A	-	-	-	-	-	-	36	0	0	46	5	10.86956522	0	0	NA	0	0	NA	1.731976103	1	0	0.268023897	1	1	0.731976103	unphased	0.67212924	0.918239321	0.731976103	0.0025	0.9975	0	0	2	3.61E-06	1	1	1	NA	NA	NA	NA
1351289	1206612912	PD9774b	18	69023240	G	A	-	-	-	-	-	-	29	0	0	49	6	12.24489796	0	0	NA	0	0	NA	1.731976103	1	0	0.268023897	1	1	0.731976103	unphased	0.757174164	1.034424704	0.731976103	0.00375	0.995	0.00125	0	2	1.82E-07	1	1	1	NA	NA	NA	NA
1351289	1206612991	PD9774b	18	69893351	C	A	-	-	-	-	-	-	34	0	0	56	5	8.928571429	0	0	NA	0	0	NA	1.731976103	1	0	0.268023897	1	1	0.731976103	unphased	0.552106161	0.754268013	0.731976103	0.00375	0.99625	0	0	2	9.65E-06	1	1	1	NA	NA	NA	NA
1351289	1206613111	PD9774b	18	71265934	G	A	-	-	-	-	-	-	35	0	0	66	13	19.6969697	224	0	0	349	41	11.747851	1.731976103	1	0	0.268023897	1	1	0.731976103	unphased	1.217979653	1.217979653	1	0	1	0	0	2	1.95E-17	1	4.71E-42	1	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206613269	PD9774b	18	73413332	C	A	AC090338.1	ENST00000515252	r.?	-	-	intronic	32	0	0	61	6	9.836065574	0	0	NA	0	0	NA	1.731976103	1	0	0.268023897	1	1	0.731976103	unphased	0.60822187	0.83093132	0.731976103	0.00125	0.9975	0.00125	0	2	6.85E-07	1	1	1	NA	NA	NA	NA
1351289	1206613278	PD9774b	18	73478297	C	A	-	-	-	-	-	-	28	0	0	60	12	20	0	0	NA	0	0	NA	1.731976103	1	0	0.268023897	1	1	0.731976103	unphased	1.236717801	1.236717801	1	0	0.99875	0.00125	0	2	2.74E-16	1	1	1	NA	NA	NA	NA
1351289	1206613362	PD9774b	18	74634082	T	A	ZNF236	CCDS42447.1	r.?	-	-	intronic	39	0	0	63	5	7.936507937	0	0	NA	0	0	NA	1.731976103	1	0	0.268023897	1	1	0.731976103	unphased	0.490761032	0.670460456	0.731976103	0.0125	0.9875	0	0	2	1.73E-05	1	1	1	NA	NA	NA	NA
1351289	1206614193	PD9774b	19	2591852	C	A	GNG7	CCDS12091.1	r.?	-	-	intronic	30	0	0	37	5	13.51351351	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.601569311	0.601569311	1	0.01	0.99	0	0	2	1.19E-06	1	1	1	NA	NA	NA	NA
1351289	1206614424	PD9774b	19	4637950	C	A	TNFAIP8L1	CCDS12132.1	r.?	-	-	upstream	23	0	0	48	8	16.66666667	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.741935484	0.741935484	1	0.005	0.995	0	0	2	1.23E-10	1	1	1	NA	NA	NA	NA
1351289	1206614494	PD9774b	19	5178818	G	A	-	-	-	-	-	-	42	0	0	48	5	10.41666667	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.463709677	0.463709677	1	0.0175	0.9825	0	0	2	4.47E-06	1	1	1	NA	NA	NA	NA
1351289	1206614588	PD9774b	19	6012140	G	A	RFX2	CCDS12157.1	r.?	-	-	intronic	29	0	0	53	9	16.98113208	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.755934267	0.755934267	1	0.0025	0.9975	0	0	2	7.10E-12	1	1	1	NA	NA	NA	NA
1351289	1206615043	PD9774b	19	9691719	G	A	ZNF121	CCDS32902.1	r.?	-	-	intronic	41	0	0	39	7	17.94871795	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.799007444	0.799007444	1	0.00125	0.99875	0	0	2	1.04E-09	1	1	1	NA	NA	NA	NA
1351289	1206615152	PD9774b	19	10762043	G	A	ILF3	CCDS45965.1	r.?	-	-	upstream	31	0	0	53	8	15.09433962	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.67194157	0.67194157	1	0.00875	0.99125	0	0	2	2.83E-10	1	1	1	NA	NA	NA	NA
1351289	1206615423	PD9774b	19	13693787	G	A	-	-	-	-	-	-	43	0	0	45	8	17.77777778	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.791397849	0.791397849	1	0.0025	0.9975	0	0	2	7.14E-11	1	1	1	NA	NA	NA	NA
1351289	1206615518	PD9774b	19	14755219	G	A	EMR3	CCDS12315.1	r.?	-	-	intronic	23	0	0	46	6	13.04347826	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.580645161	0.580645161	1	0.0025	0.9975	0	0	2	1.23E-07	1	1	1	NA	NA	NA	NA
1351289	1206616114	PD9774b	19	19837469	T	A	ZNF14	CCDS12409.1	r.?	-	-	intronic	19	0	0	49	5	10.20408163	0	0	NA	0	0	NA	1.527660281	1	0	0.472339719	1	1	0.527660281	unphased	0.610129917	1.156293052	0.527660281	0.00125	0.9975	0.00125	0	2	4.96E-06	1	1	1	NA	NA	NA	NA
1351289	1206616580	PD9774b	19	23491203	T	A	-	-	-	-	-	-	33	0	0	56	7	12.5	0	0	NA	0	0	NA	1.527660281	1	0	0.472339719	1	1	0.527660281	unphased	0.747409148	0.747409148	1	0.00125	0.9975	0.00125	0	2	1.46E-08	1	1	1	NA	NA	NA	NA
1351289	1206616695	PD9774b	19	24448855	C	A	-	-	-	-	-	-	33	0	0	67	9	13.43283582	0	0	NA	0	0	NA	1.527660281	1	0	0.472339719	1	1	0.527660281	unphased	0.80318595	0.80318595	1	0.005	0.995	0	0	2	6.43E-11	1	1	1	NA	NA	NA	NA
1351289	1206617654	PD9774b	19	28662067	C	A	-	-	-	-	-	-	28	0	0	59	11	18.6440678	0	0	NA	1	0	0	1	1	0	1	NA	NA	NA	unphased	1.016402406	1.016402406	1	0.00125	0.9975	0.00125	0	2	1.10E-14	1	1	1	NA	NA	NA	NA
1351289	1206617694	PD9774b	19	29128038	G	A	AC005307.1	ENST00000511462	r.?	-	-	intronic	32	0	0	66	16	24.24242424	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.321603128	1.321603128	1	0	0.995	0.005	0	2	1.03E-22	1	1	1	NA	NA	NA	NA
1351289	1206617900	PD9774b	19	31333718	C	A	-	-	-	-	-	-	29	0	0	49	11	22.44897959	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.223831468	1.223831468	1	0	0.995	0.005	0	2	1.19E-15	1	1	1	NA	NA	NA	NA
1351289	1206617979	PD9774b	19	32517825	G	A	AC005547.1	ENST00000504888	r.?	-	-	intronic	22	0	0	57	5	8.771929825	0	0	NA	1	0	0	1	1	0	1	NA	NA	NA	unphased	0.478211658	0.478211658	1	0.01125	0.98875	0	0	2	1.05E-05	1	1	1	NA	NA	NA	NA
1351289	1206618174	PD9774b	19	34175060	G	A	CHST8	CCDS12433.1	r.?	-	-	upstream	32	0	0	46	8	17.39130435	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.948106592	0.948106592	1	0	1	0	0	2	8.61E-11	1	1	1	NA	NA	NA	NA
1351289	1206618291	PD9774b	19	35534710	C	A	HPN	CCDS32993.1	r.?	-	-	intronic	31	0	0	60	19	31.66666667	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.726344086	1.726344086	1	0	0.9275	0.0725	0	2	3.21E-29	1	1	1	NA	NA	NA	NA
1351289	1206618708	PD9774b	19	38889640	G	A	SPRED3	CCDS42560.1	r.?	-	-	downstream	26	0	0	42	12	28.57142857	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.557603687	1.557603687	1	0	0.9925	0.0075	0	2	2.35E-18	1	1	1	NA	NA	NA	NA
1351289	1206618746	PD9774b	19	39284322	C	A	LGALS7B	CCDS42565.1	r.?	-	-	downstream	45	0	0	52	9	17.30769231	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.943548387	0.943548387	1	0	0.99625	0.00375	0	2	5.92E-12	1	1	1	NA	NA	NA	NA
1351289	1206619044	PD9774b	19	42146920	G	A	-	-	-	-	-	-	18	0	0	36	6	16.66666667	0	0	NA	2	0	0	1	1	0	1	NA	NA	NA	unphased	0.908602151	0.908602151	1	0.00375	0.99375	0.0025	0	2	2.68E-08	1	1	1	NA	NA	NA	NA
1351289	1206619169	PD9774b	19	43432279	C	A	PSG1	ENST00000449000	r.?	-	-	intronic	40	0	0	45	7	15.55555556	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.848028674	0.848028674	1	0	1	0	0	2	3.00E-09	1	1	1	NA	NA	NA	NA
1351289	1206619171	PD9774b	19	43440625	C	A	PSG1	ENST00000449000	r.?	-	-	intronic	16	0	0	28	4	14.28571429	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.778801843	0.778801843	1	0.00125	0.99875	0	0	2	1.16E-05	1	1	1	NA	NA	NA	NA
1351289	1206619221	PD9774b	19	43791501	G	A	-	-	-	-	-	-	17	0	0	36	13	36.11111111	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.968637993	1.968637993	1	0	0.9175	0.0825	0	2	2.53E-21	1	1	1	NA	NA	NA	NA
1351289	1206619504	PD9774b	19	45736731	G	A	EXOC3L2	CCDS12657.1	r.?	-	-	intronic	33	0	0	56	6	10.71428571	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.584101382	0.584101382	1	0.01	0.99	0	0	2	4.09E-07	1	1	1	NA	NA	NA	NA
1351289	1206619752	PD9774b	19	48124324	C	A	GLTSCR1	CCDS46134.1	r.?	-	-	intronic	33	0	0	57	13	22.80701754	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.243350311	1.243350311	1	0	0.995	0.005	0	2	2.44E-18	1	1	1	NA	NA	NA	NA
1351289	1206620530	PD9774b	19	53980484	G	A	ZNF813	CCDS46172.1	r.?	-	-	intronic	28	0	0	44	5	11.36363636	0	0	NA	0	0	NA	1.434080173	1	0	0.565919827	1	1	0.434080173	unphased	0.668828759	0.668828759	1	0.0025	0.9975	0	0	2	2.88E-06	1	1	1	NA	NA	NA	NA
1351289	1206620725	PD9774b	19	55158392	G	A	LILRB4	ENST00000420271	r.?	-	-	intronic	26	0	0	49	6	12.24489796	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	0.912442396	0.912442396	1	0.0025	0.9975	0	0	2	1.82E-07	1	1	1	NA	NA	NA	NA
1351289	1206620825	PD9774b	19	55705276	G	A	PTPRH	CCDS33110.1	r.?	-	-	intronic	30	0	0	34	5	14.70588235	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	1.095825427	1.095825427	1	0.00375	0.99625	0	0	2	7.71E-07	1	1	1	NA	NA	NA	NA
1351289	1206621150	PD9774b	19	58005936	G	A	ZNF419	CCDS42637.1	r.2125g>a	c.?	p.?	3'UTR variant	34	0	0	58	5	8.620689655	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	0.642380423	0.642380423	1	0.005	0.995	0	0	2	1.15E-05	1	1	1	NA	NA	NA	NA
1351289	1206621264	PD9774b	19	58948129	G	A	ZNF132	CCDS12980.1	r.?	-	-	intronic	38	0	0	65	5	7.692307692	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	0.573200993	0.573200993	1	0.00125	0.99875	0	0	2	2.01E-05	1	1	1	NA	NA	NA	NA
1351289	1206621606	PD9774b	2	2062504	C	A	MYT1L	CCDS46222.1	r.?	-	-	intronic	50	0	0	59	6	10.16949153	0	0	NA	0	0	NA	0.762600955	0	0	0.237399045	1	0	0.762600955	unphased	0.530259036	0.695329625	0.762600955	0.0025	0.9975	0	0	2	5.61E-07	1	1	1	NA	NA	NA	NA
1351289	1206621795	PD9774b	2	4186442	C	A	-	-	-	-	-	-	34	0	0	45	8	17.77777778	0	0	NA	0	0	NA	0.762600955	0	0	0.237399045	1	0	0.762600955	unphased	0.926971353	0.926971353	1	0	0.99875	0.00125	0	2	7.14E-11	1	1	1	NA	NA	NA	NA
1351289	1206622172	PD9774b	2	8582620	G	A	-	-	-	-	-	-	30	0	0	34	8	23.52941176	0	0	NA	0	0	NA	0.762600955	0	0	0.237399045	1	0	0.762600955	unphased	1.226873849	1.226873849	1	0	0.99875	0.00125	0	2	6.32E-12	1	1	1	NA	NA	NA	NA
1351289	1206622278	PD9774b	2	9978348	C	A	TAF1B	ENST00000396242	r.?	-	-	intronic	30	0	0	36	7	19.44444444	0	0	NA	0	0	NA	0.762600955	0	0	0.237399045	1	0	0.762600955	unphased	1.013874917	1.013874917	1	0.00125	0.99875	0	0	2	5.74E-10	1	1	1	NA	NA	NA	NA
1351289	1206622336	PD9774b	2	10333436	G	A	C2orf48	CCDS1670.1	r.?	-	-	intronic	26	0	0	60	5	8.333333333	2	0	0	0	0	NA	0.762600955	0	0	0.237399045	1	0	0.762600955	unphased	0.434517822	0.569783998	0.762600955	0.0025	0.9975	0	0	2	1.36E-05	1	1	1	NA	NA	NA	NA
1351289	1206622523	PD9774b	2	11905484	G	A	LPIN1	CCDS1682.1	r.?	-	-	intronic	27	0	0	43	9	20.93023256	0	0	NA	0	0	NA	0.762600955	0	0	0.237399045	1	0	0.762600955	unphased	1.091347087	1.091347087	1	0	1	0	0	2	9.45E-13	1	1	1	NA	NA	NA	NA
1351289	1206622684	PD9774b	2	14117485	G	A	-	-	-	-	-	-	38	0	0	62	7	11.29032258	0	0	NA	0	0	NA	0.762600955	0	0	0.237399045	1	0	0.762600955	unphased	0.588701565	0.771965417	0.762600955	0.00125	0.99875	0	0	2	3.02E-08	1	1	1	NA	NA	NA	NA
1351289	1206622692	PD9774b	2	14281245	G	A	-	-	-	-	-	-	26	0	0	64	11	17.1875	0	0	NA	0	0	NA	0.762600955	0	0	0.237399045	1	0	0.762600955	unphased	0.896193007	0.896193007	1	0	1	0	0	2	2.85E-14	1	1	1	NA	NA	NA	NA
1351289	1206623201	PD9774b	2	21965277	T	A	-	-	-	-	-	-	41	0	0	52	8	15.38461538	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.992555831	0.992555831	1	0.0025	0.9975	0	0	2	2.42E-10	1	1	1	NA	NA	NA	NA
1351289	1206623230	PD9774b	2	22514544	C	A	-	-	-	-	-	-	39	0	0	66	6	9.090909091	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.586510264	0.586510264	1	0.01	0.99	0	0	2	1.10E-06	1	1	1	NA	NA	NA	NA
1351289	1206623257	PD9774b	2	22839113	G	A	-	-	-	-	-	-	27	0	0	60	10	16.66666667	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	1.241935484	1.241935484	1	0	0.995	0.005	0	2	5.86E-13	1	1	1	NA	NA	NA	NA
1351289	1206623340	PD9774b	2	23804718	T	A	KLHL29	ENST00000486442	r.?	-	-	intronic	21	0	0	32	6	18.75	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	1.397177419	1.397177419	1	0	0.995	0.005	0	2	1.27E-08	1	1	1	NA	NA	NA	NA
1351289	1206623571	PD9774b	2	25299933	C	A	EFR3B	CCDS46231.1	r.?	-	-	intronic	44	0	0	66	8	12.12121212	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	0.903225806	0.903225806	1	0.00125	0.99875	0	0	2	1.73E-09	1	1	1	NA	NA	NA	NA
1351289	1206623628	PD9774b	2	25709708	T	A	DTNB	CCDS46237.1	r.?	-	-	intronic	27	0	0	67	6	8.955223881	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	0.667308618	0.667308618	1	0.005	0.995	0	0	2	1.20E-06	1	1	1	NA	NA	NA	NA
1351289	1206623832	PD9774b	2	27241398	C	A	MAPRE3	CCDS1731.1	r.?	-	-	intronic	36	0	0	73	11	15.06849315	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	1.12284578	1.12284578	1	0	1	0	0	2	1.31E-13	1	1	1	NA	NA	NA	NA
1351289	1206623840	PD9774b	2	27323413	T	A	KHK	CCDS1734.1	r.2205u>a	c.?	p.?	3'UTR variant	31	0	0	45	5	11.11111111	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	0.827956989	0.827956989	1	0.00625	0.99375	0	0	2	3.23E-06	1	1	1	NA	NA	NA	NA
1351289	1206623917	PD9774b	2	27974223	C	A	-	-	-	-	-	-	26	0	0	51	7	13.7254902	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	1.022770398	1.022770398	1	0.0025	0.9975	0	0	2	7.46E-09	1	1	1	NA	NA	NA	NA
1351289	1206623980	PD9774b	2	28591744	G	A	-	-	-	-	-	-	34	0	0	49	8	16.32653061	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	1.216589862	1.216589862	1	0	0.9975	0.0025	0	2	1.47E-10	1	1	1	NA	NA	NA	NA
1351289	1206624065	PD9774b	2	29249718	G	A	FAM179A	CCDS1769.2	r.2205-1g>a	c.1854-1G>A	p.?	ess splice	32	0	0	53	10	18.86792453	177	0	0	114	22	19.29824561	3	2	1	1	NA	NA	NA	unphased	1.405964699	1.405964699	1	0	0.99625	0.00375	0	2	1.57E-13	1	2.79E-28	1	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206624235	PD9774b	2	31046309	G	A	-	-	-	-	-	-	29	0	0	59	9	15.25423729	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	1.136686714	1.136686714	1	0	1	0	0	2	1.96E-11	1	1	1	NA	NA	NA	NA
1351289	1206624297	PD9774b	2	31782010	C	A	SRD5A2	ENST00000405650	r.?	-	-	intronic	40	0	0	64	15	23.4375	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	1.746471774	0.873235887	2	0	0.99875	0.00125	0	2	3.87E-21	1	1	1	NA	NA	NA	NA
1351289	1206624497	PD9774b	2	33945589	T	A	-	-	-	-	-	-	33	0	0	70	11	15.71428571	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	1.170967742	1.170967742	1	0	0.9975	0.0025	0	2	8.06E-14	1	1	1	NA	NA	NA	NA
1351289	1206624609	PD9774b	2	35282172	T	A	-	-	-	-	-	-	42	0	0	76	5	6.578947368	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	0.490237691	0.490237691	1	0.01	0.99	0	0	2	4.30E-05	1	1	1	NA	NA	NA	NA
1351289	1206624686	PD9774b	2	35958663	G	A	-	-	-	-	-	-	30	0	0	68	16	23.52941176	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	1.753320683	0.876660342	2	0.00125	0.99875	0	0	2	1.75E-22	1	1	1	NA	NA	NA	NA
1351289	1206625081	PD9774b	2	38758290	G	A	-	-	-	-	-	-	43	0	0	53	6	11.32075472	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	0.843578819	0.843578819	1	0.00375	0.99625	0	0	2	2.93E-07	1	1	1	NA	NA	NA	NA
1351289	1206625107	PD9774b	2	38964303	G	A	GALM	CCDS1797.1	r.?	-	-	downstream	54	0	0	91	10	10.98901099	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	0.818858561	0.818858561	1	0	1	0	0	2	4.34E-11	1	1	1	NA	NA	NA	NA
1351289	1206625233	PD9774b	2	39954401	C	A	-	-	-	-	-	-	38	0	0	62	16	25.80645161	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	1.922996878	0.961498439	2	0	1	0	0	2	3.36E-23	1	1	1	NA	NA	NA	NA
1351289	1206625347	PD9774b	2	41099582	G	A	-	-	-	-	-	-	30	0	0	78	10	12.82051282	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	0.955334988	0.955334988	1	0.00125	0.99875	0	0	2	9.02E-12	1	1	1	NA	NA	NA	NA
1351289	1206625439	PD9774b	2	41963674	G	A	-	-	-	-	-	-	41	0	0	47	6	12.76595745	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.823610158	0.823610158	1	0.00375	0.99625	0	0	2	1.41E-07	1	1	1	NA	NA	NA	NA
1351289	1206625714	PD9774b	2	45138385	G	A	-	-	-	-	-	-	39	0	0	53	6	11.32075472	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.730371272	0.730371272	1	0	1	0	0	2	2.93E-07	1	1	1	NA	NA	NA	NA
1351289	1206625737	PD9774b	2	45369436	C	A	-	-	-	-	-	-	22	0	0	57	6	10.52631579	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.679117148	0.679117148	1	0.00625	0.99375	0	0	2	4.56E-07	1	1	1	NA	NA	NA	NA
1351289	1206625807	PD9774b	2	46477586	C	A	-	-	-	-	-	-	37	0	0	66	11	16.66666667	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.075268817	1.075268817	1	0	0.99875	0.00125	0	2	4.07E-14	1	1	1	NA	NA	NA	NA
1351289	1206626037	PD9774b	2	48847816	T	A	STON1-GTF2A1L	CCDS1840.1	r.?	-	-	intronic	39	0	0	45	4	8.888888889	0	0	NA	1	0	0	2	1	1	1	NA	NA	NA	unphased	0.573476703	0.573476703	1	0.005	0.995	0	0	2	7.91E-05	1	1	1	NA	NA	NA	NA
1351289	1206626079	PD9774b	2	49297342	C	A	FSHR	CCDS1843.1	r.?	-	-	intronic	39	0	0	57	13	22.80701754	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.471420487	1.471420487	1	0	0.99	0.01	0	2	2.44E-18	1	1	1	NA	NA	NA	NA
1351289	1206626178	PD9774b	2	50893432	T	A	NRXN1	CCDS46282.1	r.?	-	-	intronic	39	0	0	58	4	6.896551724	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.444938821	0.444938821	1	0.01	0.99	0	0	2	0.000213772	1	1	1	NA	NA	NA	NA
1351289	1206626464	PD9774b	2	54958647	G	A	EML6	CCDS46286.1	r.?	-	-	intronic	29	0	0	56	6	10.71428571	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.69124424	0.69124424	1	0.00375	0.995	0.00125	0	2	4.09E-07	1	1	1	NA	NA	NA	NA
1351289	1206626538	PD9774b	2	55716789	C	A	-	-	-	-	-	-	38	0	0	44	4	9.090909091	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.586510264	0.586510264	1	0.0075	0.9925	0	0	2	7.23E-05	1	1	1	NA	NA	NA	NA
1351289	1206626565	PD9774b	2	56082818	C	A	-	-	-	-	-	-	21	0	0	58	5	8.620689655	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.556173526	0.556173526	1	0.0075	0.9925	0	0	2	1.15E-05	1	1	1	NA	NA	NA	NA
1351289	1206626720	PD9774b	2	58985463	C	A	-	-	-	-	-	-	25	0	0	54	6	11.11111111	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.716845878	0.716845878	1	0	0.99875	0.00125	0	2	3.29E-07	1	1	1	NA	NA	NA	NA
1351289	1206627045	PD9774b	2	62558803	G	A	AC107081.2	ENST00000506268	r.?	-	-	intronic	23	0	0	61	10	16.39344262	0	0	NA	0	0	NA	1.588737909	1	0	0.411262091	1	1	0.588737909	unphased	0.990221445	0.990221445	1	0	1	0	0	2	6.98E-13	1	1	1	NA	NA	NA	NA
1351289	1206627046	PD9774b	2	62615358	T	A	-	-	-	-	-	-	33	0	0	51	10	19.60784314	0	0	NA	0	0	NA	1.588737909	1	0	0.411262091	1	1	0.588737909	unphased	1.184382512	1.184382512	1	0	0.99875	0.00125	0	2	1.04E-13	1	1	1	NA	NA	NA	NA
1351289	1206627139	PD9774b	2	63904721	C	A	-	-	-	-	-	-	35	0	0	62	9	14.51612903	0	0	NA	0	0	NA	1.588737909	1	0	0.411262091	1	1	0.588737909	unphased	0.876825118	0.876825118	1	0.00125	0.99875	0	0	2	3.12E-11	1	1	1	NA	NA	NA	NA
1351289	1206627154	PD9774b	2	64113238	T	A	UGP2	CCDS1875.1	r.?	-	-	intronic	31	0	0	42	5	11.9047619	0	0	NA	0	0	NA	1.588737909	1	0	0.411262091	1	1	0.588737909	unphased	0.719089382	1.221408323	0.588737909	0	0.99875	0.00125	0	2	2.28E-06	1	1	1	NA	NA	NA	NA
1351289	1206627270	PD9774b	2	65355594	T	A	RAB1A	CCDS46306.1	r.?	-	-	intronic	52	0	0	54	9	16.66666667	0	0	NA	0	0	NA	1.588737909	1	0	0.411262091	1	1	0.588737909	unphased	1.006725135	1.006725135	1	0	1	0	0	2	8.48E-12	1	1	1	NA	NA	NA	NA
1351289	1206627368	PD9774b	2	66065241	C	A	-	-	-	-	-	-	39	0	0	63	10	15.87301587	0	0	NA	0	0	NA	1.588737909	1	0	0.411262091	1	1	0.588737909	unphased	0.958785843	0.958785843	1	0	1	0	0	2	9.81E-13	1	1	1	NA	NA	NA	NA
1351289	1206627369	PD9774b	2	66065242	T	A	-	-	-	-	-	-	39	0	0	64	11	17.1875	0	0	NA	0	0	NA	1.588737909	1	0	0.411262091	1	1	0.588737909	unphased	1.038185296	1.038185296	1	0	1	0	0	2	2.85E-14	1	1	1	NA	NA	NA	NA
1351289	1206627839	PD9774b	2	72232954	G	A	-	-	-	-	-	-	24	0	0	66	12	18.18181818	0	0	NA	0	0	NA	1.588737909	1	0	0.411262091	1	1	0.588737909	unphased	1.098245602	1.098245602	1	0	1	0	0	2	9.36E-16	1	1	1	NA	NA	NA	NA
1351289	1206627954	PD9774b	2	74035107	G	A	C2orf78	CCDS46338.1	r.?	-	-	intronic	37	0	0	49	5	10.20408163	0	0	NA	0	0	NA	1.588737909	1	0	0.411262091	1	1	0.588737909	unphased	0.616362328	1.04692142	0.588737909	0.0025	0.9975	0	0	2	4.96E-06	1	1	1	NA	NA	NA	NA
1351289	1206628200	PD9774b	2	77230694	C	A	LRRTM4	CCDS46346.1	r.?	-	-	intronic	36	0	0	42	7	16.66666667	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.075268817	1.075268817	1	0.00125	0.99875	0	0	2	1.81E-09	1	1	1	NA	NA	NA	NA
1351289	1206628205	PD9774b	2	77251451	G	A	LRRTM4	CCDS46346.1	r.?	-	-	intronic	23	0	0	53	8	15.09433962	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.973828363	0.973828363	1	0	1	0	0	2	2.83E-10	1	1	1	NA	NA	NA	NA
1351289	1206628396	PD9774b	2	79355254	G	A	REG1A	CCDS1964.1	r.?	-	-	downstream	30	0	0	54	11	20.37037037	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.314217443	1.314217443	1	0	0.9975	0.0025	0	2	3.84E-15	1	1	1	NA	NA	NA	NA
1351289	1206628400	PD9774b	2	79393951	T	A	-	-	-	-	-	-	36	0	0	53	7	13.20754717	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.852099817	0.852099817	1	0	1	0	0	2	9.85E-09	1	1	1	NA	NA	NA	NA
1351289	1206628460	PD9774b	2	80205514	T	A	CTNNA2	CCDS42703.2	r.?	-	-	intronic	26	0	0	53	10	18.86792453	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.217285453	1.217285453	1	0	1	0	0	2	1.57E-13	1	1	1	NA	NA	NA	NA
1351289	1206628510	PD9774b	2	80741840	G	A	CTNNA2	CCDS42703.2	r.?	-	-	intronic	26	0	0	51	6	11.76470588	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.759013283	0.759013283	1	0.0025	0.9975	0	0	2	2.32E-07	1	1	1	NA	NA	NA	NA
1351289	1206628511	PD9774b	2	80741901	G	A	CTNNA2	CCDS42703.2	r.?	-	-	intronic	49	0	0	62	5	8.064516129	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.520291363	0.520291363	1	0.0025	0.9975	0	0	2	1.60E-05	1	1	1	NA	NA	NA	NA
1351289	1206628594	PD9774b	2	81661273	C	A	-	-	-	-	-	-	42	0	0	67	7	10.44776119	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.674049109	0.674049109	1	0.005	0.995	0	0	2	5.23E-08	1	1	1	NA	NA	NA	NA
1351289	1206628690	PD9774b	2	82767180	T	A	-	-	-	-	-	-	37	0	0	59	9	15.25423729	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.984144341	0.984144341	1	0	0.99875	0.00125	0	2	1.96E-11	1	1	1	NA	NA	NA	NA
1351289	1206628695	PD9774b	2	82855639	C	A	-	-	-	-	-	-	26	0	0	53	5	9.433962264	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.608642727	0.608642727	1	0.0075	0.9925	0	0	2	7.34E-06	1	1	1	NA	NA	NA	NA
1351289	1206628817	PD9774b	2	84398843	G	A	-	-	-	-	-	-	31	0	0	65	10	15.38461538	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.992555831	0.992555831	1	0.00125	0.99875	0	0	2	1.36E-12	1	1	1	NA	NA	NA	NA
1351289	1206628840	PD9774b	2	84577811	T	A	-	-	-	-	-	-	34	0	0	56	4	7.142857143	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.460829493	0.460829493	1	0.01	0.99	0	0	2	0.000186538	1	1	1	NA	NA	NA	NA
1351289	1206633290	PD9774b	2	95620491	G	A	-	-	-	-	-	-	30	0	0	62	9	14.51612903	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.936524454	0.936524454	1	0	0.99875	0.00125	0	2	3.12E-11	1	1	1	NA	NA	NA	NA
1351289	1206633905	PD9774b	2	98176066	C	A	ANKRD36B	ENST00000258459	r.?	-	-	intronic	40	0	0	77	7	9.090909091	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.586510264	0.586510264	1	0.0075	0.9925	0	0	2	1.38E-07	1	1	1	NA	NA	NA	NA
1351289	1206634344	PD9774b	2	102955686	C	A	IL1RL1	CCDS2058.1	r.?	-	-	intronic	28	0	0	83	25	30.12048193	0	0	NA	0	0	NA	4	3	1	1	NA	NA	NA	unphased	2.545666537	0.848555512	3	0	1	0	0	2	2.44E-37	1	1	1	NA	NA	NA	NA
1351289	1206634473	PD9774b	2	105020878	T	A	-	-	-	-	-	-	43	0	0	72	9	12.5	0	0	NA	0	0	NA	1.576711255	1	0	0.423288745	1	1	0.576711255	unphased	0.75354052	0.75354052	1	0.00375	0.99625	0	0	2	1.25E-10	1	1	1	NA	NA	NA	NA
1351289	1206634751	PD9774b	2	108665039	T	A	-	-	-	-	-	-	41	0	0	52	11	21.15384615	0	0	NA	0	0	NA	1.576711255	1	0	0.423288745	1	1	0.576711255	unphased	1.275222418	1.275222418	1	0	0.99875	0.00125	0	2	2.44E-15	1	1	1	NA	NA	NA	NA
1351289	1206634833	PD9774b	2	109579614	C	A	EDAR	CCDS2081.1	r.?	-	-	intronic	33	0	0	43	12	27.90697674	0	0	NA	0	0	NA	1.576711255	1	0	0.423288745	1	1	0.576711255	unphased	1.682323021	1.682323021	1	0	0.97875	0.02125	0	2	3.24E-18	1	1	1	NA	NA	NA	NA
1351289	1206635011	PD9774b	2	112065751	G	A	-	-	-	-	-	-	15	0	0	20	5	25	0	0	NA	0	0	NA	1.576711255	1	0	0.423288745	1	1	0.576711255	unphased	1.50708104	1.50708104	1	0	0.995	0.005	0	2	4.55E-08	1	1	1	NA	NA	NA	NA
1351289	1206635173	PD9774b	2	113340975	G	A	CHCHD5	CCDS2098.1	r.?	-	-	upstream	36	0	0	66	5	7.575757576	0	0	NA	0	0	NA	1.576711255	1	0	0.423288745	1	1	0.576711255	unphased	0.456691224	0.79188887	0.576711255	0.00125	0.9975	0.00125	0	2	2.17E-05	1	1	1	NA	NA	NA	NA
1351289	1206635267	PD9774b	2	114200577	G	A	CBWD2	CCDS2116.1	r.?	-	-	intronic	31	0	0	40	4	10	0	0	NA	0	0	NA	1.576711255	1	0	0.423288745	1	1	0.576711255	unphased	0.602832416	1.045293308	0.576711255	0.00125	0.99875	0	0	2	4.95E-05	1	1	1	NA	NA	NA	NA
1351289	1206635464	PD9774b	2	114793507	C	A	-	-	-	-	-	-	28	0	0	57	8	14.03508772	0	0	NA	0	0	NA	1.576711255	1	0	0.423288745	1	1	0.576711255	unphased	0.846080584	0.846080584	1	0.00125	0.99875	0	0	2	5.19E-10	1	1	1	NA	NA	NA	NA
1351289	1206635542	PD9774b	2	115760517	G	A	DPP10	CCDS46400.1	r.?	-	-	intronic	37	0	0	46	5	10.86956522	0	0	NA	0	0	NA	1.576711255	1	0	0.423288745	1	1	0.576711255	unphased	0.655252626	1.136188379	0.576711255	0	0.99875	0.00125	0	2	3.61E-06	1	1	1	NA	NA	NA	NA
1351289	1206635549	PD9774b	2	115825910	T	A	DPP10	CCDS46400.1	r.?	-	-	intronic	31	0	0	51	5	9.803921569	0	0	NA	0	0	NA	1.576711255	1	0	0.423288745	1	1	0.576711255	unphased	0.591012172	1.024797361	0.576711255	0.00125	0.99875	0	0	2	6.06E-06	1	1	1	NA	NA	NA	NA
1351289	1206635554	PD9774b	2	115876444	G	A	DPP10	CCDS46400.1	r.?	-	-	intronic	35	0	0	44	5	11.36363636	0	0	NA	0	0	NA	1.576711255	1	0	0.423288745	1	1	0.576711255	unphased	0.685036836	1.187833305	0.576711255	0.0025	0.99625	0.00125	0	2	2.88E-06	1	1	1	NA	NA	NA	NA
1351289	1206635684	PD9774b	2	117282731	G	A	-	-	-	-	-	-	28	0	0	43	7	16.27906977	0	0	NA	0	0	NA	1.576711255	1	0	0.423288745	1	1	0.576711255	unphased	0.981355096	0.981355096	1	0.00125	0.99875	0	0	2	2.15E-09	1	1	1	NA	NA	NA	NA
1351289	1206635685	PD9774b	2	117292977	T	A	-	-	-	-	-	-	35	0	0	51	4	7.843137255	0	0	NA	0	0	NA	1.576711255	1	0	0.423288745	1	1	0.576711255	unphased	0.472809738	0.819837889	0.576711255	0.00125	0.9975	0.00125	0	2	0.000129466	1	1	1	NA	NA	NA	NA
1351289	1206635825	PD9774b	2	118831384	G	A	-	-	-	-	-	-	37	0	0	44	13	29.54545455	0	0	NA	0	0	NA	1.576711255	1	0	0.423288745	1	1	0.576711255	unphased	1.781095774	1.781095774	1	0	0.94875	0.05125	0	2	5.49E-20	1	1	1	NA	NA	NA	NA
1351289	1206636072	PD9774b	2	122134919	T	A	CLASP1	ENST00000263710	r.?	-	-	intronic	42	0	0	66	7	10.60606061	0	0	NA	0	0	NA	1.576711255	1	0	0.423288745	1	1	0.576711255	unphased	0.639367714	1.108644418	0.576711255	0	0.99875	0.00125	0	2	4.70E-08	1	1	1	NA	NA	NA	NA
1351289	1206636158	PD9774b	2	123270588	G	A	-	-	-	-	-	-	39	0	0	50	11	22	0	0	NA	0	0	NA	1.576711255	1	0	0.423288745	1	1	0.576711255	unphased	1.326231315	1.326231315	1	0	0.99375	0.00625	0	2	1.52E-15	1	1	1	NA	NA	NA	NA
1351289	1206636338	PD9774b	2	125869650	C	A	-	-	-	-	-	-	27	0	0	43	6	13.95348837	0	0	NA	0	0	NA	0.854554788	0	0	0.145445212	1	0	0.854554788	unphased	0.740395492	0.866410793	0.854554788	0	1	0	0	2	8.13E-08	1	1	1	NA	NA	NA	NA
1351289	1206636371	PD9774b	2	126288791	C	A	-	-	-	-	-	-	31	0	0	46	4	8.695652174	0	0	NA	0	0	NA	0.854554788	0	0	0.145445212	1	0	0.854554788	unphased	0.461405886	0.539937161	0.854554788	0.005	0.99375	0.00125	0	2	8.62E-05	1	1	1	NA	NA	NA	NA
1351289	1206636552	PD9774b	2	128947760	G	A	UGGT1	CCDS2154.1	r.5159g>a	c.?	p.?	3'UTR variant	23	0	0	33	4	12.12121212	0	0	NA	0	0	NA	0.854554788	0	0	0.145445212	1	0	0.854554788	unphased	0.643171841	0.752639679	0.854554788	0.0025	0.9975	0	0	2	2.28E-05	1	1	1	NA	NA	NA	NA
1351289	1206636658	PD9774b	2	130546138	G	A	-	-	-	-	-	-	32	0	0	49	9	18.36734694	0	0	NA	0	0	NA	0.854554788	0	0	0.145445212	1	0	0.854554788	unphased	0.974602229	0.974602229	1	0.00125	0.99875	0	0	2	3.35E-12	1	1	1	NA	NA	NA	NA
1351289	1206636980	PD9774b	2	132643614	T	A	-	-	-	-	-	-	42	0	0	52	10	19.23076923	0	0	NA	0	0	NA	0.854554788	0	0	0.145445212	1	0	0.854554788	unphased	1.020416864	1.020416864	1	0	1	0	0	2	1.28E-13	1	1	1	NA	NA	NA	NA
1351289	1206639215	PD9774b	2	137397105	T	A	-	-	-	-	-	-	27	0	0	45	8	17.77777778	0	0	NA	0	0	NA	0.854554788	0	0	0.145445212	1	0	0.854554788	unphased	0.943318701	0.943318701	1	0	0.99875	0.00125	0	2	7.14E-11	1	1	1	NA	NA	NA	NA
1351289	1206639259	PD9774b	2	138120230	G	A	THSD7B	ENST00000409968	r.?	-	-	intronic	29	0	0	53	8	15.09433962	0	0	NA	2	0	0	0.854554788	0	0	0.145445212	1	0	0.854554788	unphased	0.800930972	0.937249412	0.854554788	0	1	0	0	2	2.83E-10	1	1	1	NA	NA	NA	NA
1351289	1206639524	PD9774b	2	141494796	G	A	LRP1B	CCDS2182.1	r.?	-	-	intronic	38	0	0	50	8	16	0	0	NA	0	0	NA	0.854554788	0	0	0.145445212	1	0	0.854554788	unphased	0.848986831	0.993484376	0.854554788	0	1	0	0	2	1.74E-10	1	1	1	NA	NA	NA	NA
1351289	1206639587	PD9774b	2	141933522	T	A	LRP1B	CCDS2182.1	r.?	-	-	intronic	34	0	0	36	4	11.11111111	0	0	NA	0	0	NA	0.854554788	0	0	0.145445212	1	0	0.854554788	unphased	0.589574188	0.689919706	0.854554788	0.00125	0.99875	0	0	2	3.24E-05	1	1	1	NA	NA	NA	NA
1351289	1206639628	PD9774b	2	142356412	G	A	LRP1B	CCDS2182.1	r.?	-	-	intronic	30	0	0	38	4	10.52631579	0	0	NA	0	0	NA	0.854554788	0	0	0.145445212	1	0	0.854554788	unphased	0.558543967	0.653608142	0.854554788	0.0075	0.9925	0	0	2	4.03E-05	1	1	1	NA	NA	NA	NA
1351289	1206639840	PD9774b	2	145361269	C	A	-	-	-	-	-	-	32	0	0	60	8	13.33333333	0	0	NA	0	0	NA	0.854554788	0	0	0.145445212	1	0	0.854554788	unphased	0.707489025	0.827903647	0.854554788	0.0025	0.9975	0	0	2	7.93E-10	1	1	1	NA	NA	NA	NA
1351289	1206640170	PD9774b	2	150524095	T	A	-	-	-	-	-	-	31	0	0	43	7	16.27906977	0	0	NA	0	0	NA	0.854554788	0	0	0.145445212	1	0	0.854554788	unphased	0.86379474	1.010812592	0.854554788	0.00125	0.99875	0	0	2	2.15E-09	1	1	1	NA	NA	NA	NA
1351289	1206640494	PD9774b	2	154692056	T	A	-	-	-	-	-	-	30	0	0	53	6	11.32075472	0	0	NA	0	0	NA	0.854554788	0	0	0.145445212	1	0	0.854554788	unphased	0.600698229	0.702937059	0.854554788	0.00125	0.99875	0	0	2	2.93E-07	1	1	1	NA	NA	NA	NA
1351289	1206640580	PD9774b	2	155949424	T	A	-	-	-	-	-	-	34	0	0	47	4	8.510638298	0	0	NA	0	0	NA	0.854554788	0	0	0.145445212	1	0	0.854554788	unphased	0.45158874	0.528449136	0.854554788	0.00625	0.99375	0	0	2	9.39E-05	1	1	1	NA	NA	NA	NA
1351289	1206640700	PD9774b	2	158044789	C	A	-	-	-	-	-	-	45	0	0	52	8	15.38461538	0	0	NA	0	0	NA	0.854554788	0	0	0.145445212	1	0	0.854554788	unphased	0.816333491	0.955273439	0.854554788	0.0025	0.99625	0.00125	0	2	2.42E-10	1	1	1	NA	NA	NA	NA
1351289	1206640811	PD9774b	2	159844259	C	A	TANC1	CCDS42766.1	r.?	-	-	intronic	29	0	0	40	5	12.5	0	0	NA	0	0	NA	0.854554788	0	0	0.145445212	1	0	0.854554788	unphased	0.663270961	0.776159669	0.854554788	0	1	0	0	2	1.78E-06	1	1	1	NA	NA	NA	NA
1351289	1206640855	PD9774b	2	160221923	G	A	BAZ2B	CCDS2209.2	r.?	-	-	intronic	43	0	0	48	10	20.83333333	211	0	0	117	14	11.96581197	0.854554788	0	0	0.145445212	1	0	0.854554788	unphased	1.105451602	1.105451602	1	0	0.99625	0.00375	0	2	5.37E-14	1	1.73E-15	1	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206641061	PD9774b	2	162805604	T	A	SLC4A10	CCDS46438.1	r.?	-	-	intronic	40	0	0	49	9	18.36734694	0	0	NA	0	0	NA	0.854554788	0	0	0.145445212	1	0	0.854554788	unphased	0.974602229	0.974602229	1	0.00125	0.99875	0	0	2	3.35E-12	1	1	1	NA	NA	NA	NA
1351289	1206641122	PD9774b	2	163921240	T	A	-	-	-	-	-	-	43	0	0	48	12	25	169	0	0	137	12	8.759124088	0.854554788	0	0	0.145445212	1	0	0.854554788	unphased	1.326541923	1.326541923	1	0	0.99625	0.00375	0	2	1.44E-17	1	7.62E-12	1	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206641229	PD9774b	2	165678376	G	A	COBLL1	CCDS2223.2	r.?	-	-	intronic	42	0	0	56	12	21.42857143	0	0	NA	0	0	NA	0.854554788	0	0	0.145445212	1	0	0.854554788	unphased	1.137035934	1.137035934	1	0	1	0	0	2	1.11E-16	1	1	1	NA	NA	NA	NA
1351289	1206641439	PD9774b	2	168211812	C	A	-	-	-	-	-	-	33	0	0	54	9	16.66666667	0	0	NA	0	0	NA	0.854554788	0	0	0.145445212	1	0	0.854554788	unphased	0.884361282	1.034879559	0.854554788	0	1	0	0	2	8.48E-12	1	1	1	NA	NA	NA	NA
1351289	1206641513	PD9774b	2	169086985	C	A	STK39	CCDS42770.1	r.?	-	-	intronic	45	0	0	45	8	17.77777778	0	0	NA	0	0	NA	0.854554788	0	0	0.145445212	1	0	0.854554788	unphased	0.943318701	0.943318701	1	0.0025	0.9975	0	0	2	7.14E-11	1	1	1	NA	NA	NA	NA
1351289	1206641717	PD9774b	2	171581887	C	A	-	-	-	-	-	-	35	0	0	53	7	13.20754717	0	0	NA	0	0	NA	0.854554788	0	0	0.145445212	1	0	0.854554788	unphased	0.700814601	0.820093235	0.854554788	0.00375	0.99625	0	0	2	9.85E-09	1	1	1	NA	NA	NA	NA
1351289	1206641778	PD9774b	2	172114022	G	A	-	-	-	-	-	-	29	0	0	29	5	17.24137931	0	0	NA	0	0	NA	0.854554788	0	0	0.145445212	1	0	0.854554788	unphased	0.914856498	1.070565061	0.854554788	0.00125	0.995	0.00375	0	2	3.36E-07	1	1	1	NA	NA	NA	NA
1351289	1206642049	PD9774b	2	174816990	T	A	SP3	CCDS2254.1	r.?	-	-	intronic	37	0	0	64	7	10.9375	0	0	NA	0	0	NA	1.770709529	1	0	0.229290471	2	0	0.770709529	unphased	0.680566516	0.883038928	0.770709529	0	0.99875	0.00125	0	2	3.78E-08	1	1	1	NA	NA	NA	NA
1351289	1206642135	PD9774b	2	175989537	C	A	ATF2	CCDS2262.1	r.?	-	-	intronic	45	0	0	50	10	20	0	0	NA	0	0	NA	1.770709529	1	0	0.229290471	2	0	0.770709529	unphased	1.244464486	1.244464486	1	0	0.99625	0.00375	0	2	8.36E-14	1	1	1	NA	NA	NA	NA
1351289	1206642318	PD9774b	2	178394579	G	A	AGPS	CCDS2275.1	r.?	-	-	intronic	28	0	0	49	16	32.65306122	0	0	NA	0	0	NA	1.770709529	1	0	0.229290471	2	0	0.770709529	unphased	2.031778753	1.147437635	1.770709529	0	1	0	0	2	4.37E-25	1	1	1	NA	NA	NA	NA
1351289	1206642391	PD9774b	2	179105909	T	A	OSBPL6	CCDS2277.1	r.?	-	-	intronic	32	0	0	49	4	8.163265306	0	0	NA	0	0	NA	1.770709529	1	0	0.229290471	2	0	0.770709529	unphased	0.507944688	0.659061124	0.770709529	0.0025	0.9975	0	0	2	0.000110643	1	1	1	NA	NA	NA	NA
1351289	1206642411	PD9774b	2	179339370	C	A	FKBP7	CCDS46462.1	r.?	-	-	intronic	31	0	0	62	5	8.064516129	0	0	NA	0	0	NA	1.770709529	1	0	0.229290471	2	0	0.770709529	unphased	0.501800196	0.65108861	0.770709529	0.00375	0.99625	0	0	2	1.60E-05	1	1	1	NA	NA	NA	NA
1351289	1206642604	PD9774b	2	181856582	G	A	UBE2E3	CCDS2282.1	r.?	-	-	intronic	39	0	0	61	5	8.196721311	0	0	NA	0	0	NA	1.770709529	1	0	0.229290471	2	0	0.770709529	unphased	0.510026429	0.661762194	0.770709529	0.00375	0.99625	0	0	2	1.47E-05	1	1	1	NA	NA	NA	NA
1351289	1206642617	PD9774b	2	182103303	C	A	-	-	-	-	-	-	39	0	0	72	12	16.66666667	0	0	NA	0	0	NA	1.770709529	1	0	0.229290471	2	0	0.770709529	unphased	1.037053739	1.037053739	1	0	1	0	0	2	2.84E-15	1	1	1	NA	NA	NA	NA
1351289	1206642738	PD9774b	2	183471150	C	A	-	-	-	-	-	-	39	0	0	53	4	7.547169811	0	0	NA	0	0	NA	1.770709529	1	0	0.229290471	2	0	0.770709529	unphased	0.46960924	0.609320662	0.770709529	0.0025	0.9975	0	0	2	0.000150502	1	1	1	NA	NA	NA	NA
1351289	1206642878	PD9774b	2	184823175	T	A	-	-	-	-	-	-	45	0	0	64	7	10.9375	0	0	NA	0	0	NA	1.770709529	1	0	0.229290471	2	0	0.770709529	unphased	0.680566516	0.883038928	0.770709529	0.0025	0.99625	0.00125	0	2	3.78E-08	1	1	1	NA	NA	NA	NA
1351289	1206642903	PD9774b	2	185129075	C	A	-	-	-	-	-	-	32	0	0	59	17	28.81355932	0	0	NA	0	0	NA	1.770709529	1	0	0.229290471	2	0	0.770709529	unphased	1.792872565	1.012516472	1.770709529	0	1	0	0	2	1.74E-25	1	1	1	NA	NA	NA	NA
1351289	1206642932	PD9774b	2	185739687	T	A	ZNF804A	CCDS2291.1	r.?	-	-	intronic	45	0	0	74	24	32.43243243	0	0	NA	0	0	NA	1.770709529	1	0	0.229290471	2	0	0.770709529	unphased	2.018050519	1.139684678	1.770709529	0	1	0	0	2	8.21E-37	1	1	1	NA	NA	NA	NA
1351289	1206643124	PD9774b	2	188188951	T	A	-	-	-	-	-	-	32	0	0	45	6	13.33333333	0	0	NA	0	0	NA	1.770709529	1	0	0.229290471	2	0	0.770709529	unphased	0.829642991	1.076466502	0.770709529	0.0025	0.99625	0.00125	0	2	1.08E-07	1	1	1	NA	NA	NA	NA
1351289	1206643192	PD9774b	2	188901297	G	A	-	-	-	-	-	-	36	0	0	48	7	14.58333333	0	0	NA	0	0	NA	1.770709529	1	0	0.229290471	2	0	0.770709529	unphased	0.907422021	0.907422021	1	0	1	0	0	2	4.81E-09	1	1	1	NA	NA	NA	NA
1351289	1206643283	PD9774b	2	190268724	T	A	-	-	-	-	-	-	38	0	0	46	18	39.13043478	0	0	NA	0	0	NA	1.770709529	1	0	0.229290471	2	0	0.770709529	unphased	2.434821821	1.375054339	1.770709529	0	0.9925	0.0075	0	2	9.41E-30	1	1	1	NA	NA	NA	NA
1351289	1206643402	PD9774b	2	191319038	G	A	MFSD6	CCDS2306.1	r.?	-	-	intronic	39	0	0	48	17	35.41666667	221	1	0.452488688	159	35	22.01257862	1.770709529	1	0	0.229290471	2	0	0.770709529	unphased	2.203739195	1.244551497	1.770709529	0	0.9975	0.0025	0	2	2.80E-27	1	3.01E-46	0.669705878	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206643503	PD9774b	2	192450958	C	A	-	-	-	-	-	-	31	0	0	42	15	35.71428571	0	0	NA	0	0	NA	1.770709529	1	0	0.229290471	2	0	0.770709529	unphased	2.222258012	1.255009913	1.770709529	0	0.99875	0.00125	0	2	2.65E-24	1	1	1	NA	NA	NA	NA
1351289	1206643641	PD9774b	2	194484368	C	A	-	-	-	-	-	-	41	0	0	57	10	17.54385965	0	0	NA	0	0	NA	1.770709529	1	0	0.229290471	2	0	0.770709529	unphased	1.091635514	1.091635514	1	0	1	0	0	2	3.40E-13	1	1	1	NA	NA	NA	NA
1351289	1206643804	PD9774b	2	196214163	C	A	-	-	-	-	-	-	22	0	0	48	9	18.75	0	0	NA	0	0	NA	1.770709529	1	0	0.229290471	2	0	0.770709529	unphased	1.166685456	1.166685456	1	0	0.9975	0.0025	0	2	2.75E-12	1	1	1	NA	NA	NA	NA
1351289	1206644002	PD9774b	2	198145903	C	A	ANKRD44	ENST00000409153	r.?	-	-	intronic	33	0	0	53	14	26.41509434	0	0	NA	0	0	NA	1.770709529	1	0	0.229290471	2	0	0.770709529	unphased	1.643632341	0.928233747	1.770709529	0	1	0	0	2	1.22E-20	1	1	1	NA	NA	NA	NA
1351289	1206644014	PD9774b	2	198265218	T	A	SF3B1	CCDS33356.1	r.?	-	-	intronic	35	0	0	57	13	22.80701754	0	0	NA	0	0	NA	1.770709529	1	0	0.229290471	2	0	0.770709529	unphased	1.419126169	1.419126169	1	0	0.995	0.005	0	2	2.44E-18	1	1	1	NA	NA	NA	NA
1351289	1206644146	PD9774b	2	199678909	T	A	-	-	-	-	-	-	35	0	0	57	13	22.80701754	0	0	NA	0	0	NA	1.770709529	1	0	0.229290471	2	0	0.770709529	unphased	1.419126169	1.419126169	1	0	0.995	0.005	0	2	2.44E-18	1	1	1	NA	NA	NA	NA
1351289	1206644157	PD9774b	2	199783280	G	A	-	-	-	-	-	-	32	0	0	62	6	9.677419355	0	0	NA	0	0	NA	1.770709529	1	0	0.229290471	2	0	0.770709529	unphased	0.602160235	0.781306332	0.770709529	0.00125	0.99875	0	0	2	7.56E-07	1	1	1	NA	NA	NA	NA
1351289	1206644201	PD9774b	2	200415347	T	A	-	-	-	-	-	-	47	0	0	52	8	15.38461538	0	0	NA	0	0	NA	1.770709529	1	0	0.229290471	2	0	0.770709529	unphased	0.957280374	0.957280374	1	0	1	0	0	2	2.42E-10	1	1	1	NA	NA	NA	NA
1351289	1206644922	PD9774b	2	208986748	T	A	CRYGD	CCDS2378.1	r.?	-	-	intronic	38	0	0	61	16	26.2295082	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.429931253	1.429931253	1	0	0.98875	0.01125	0	2	2.50E-23	1	1	1	NA	NA	NA	NA
1351289	1206644942	PD9774b	2	209156027	G	A	PIKFYVE	CCDS2382.1	r.?	-	-	intronic	38	0	0	53	9	16.98113208	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.925745587	0.925745587	1	0.00125	0.99625	0.0025	0	2	7.10E-12	1	1	1	NA	NA	NA	NA
1351289	1206644974	PD9774b	2	209454234	G	A	-	-	-	-	-	-	29	0	0	51	7	13.7254902	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.748260595	0.748260595	1	0.00125	0.99875	0	0	2	7.46E-09	1	1	1	NA	NA	NA	NA
1351289	1206645457	PD9774b	2	215531131	T	A	-	-	-	-	-	-	45	0	0	37	3	8.108108108	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.442022668	0.442022668	1	0.0075	0.9925	0	0	2	0.000855237	1	1	1	NA	NA	NA	NA
1351289	1206645463	PD9774b	2	215595005	C	A	BARD1	CCDS2397.1	r.?	-	-	intronic	25	0	0	50	6	12	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.654193548	0.654193548	1	0.0025	0.9975	0	0	2	2.06E-07	1	1	1	NA	NA	NA	NA
1351289	1206645884	PD9774b	2	220160285	T	A	PTPRN	CCDS2440.1	r.?	-	-	intronic	26	0	0	53	16	30.18867925	0	0	NA	1	0	0	1	1	0	1	NA	NA	NA	unphased	1.645769933	1.645769933	1	0	0.9675	0.0325	0	2	1.90E-24	1	1	1	NA	NA	NA	NA
1351289	1206646392	PD9774b	2	225971332	G	A	-	-	-	-	-	-	43	0	0	39	6	15.38461538	0	0	NA	0	0	NA	0.724530089	0	0	0.275469911	1	0	0.724530089	unphased	0.796329691	1.099098164	0.724530089	0	0.99875	0.00125	0	2	4.43E-08	1	1	1	NA	NA	NA	NA
1351289	1206647051	PD9774b	2	233377723	T	A	-	-	-	-	-	-	24	0	0	53	10	18.86792453	0	0	NA	0	0	NA	1.658749733	1	0	0.341250267	2	0	0.658749733	unphased	1.152898611	1.152898611	1	0	0.99875	0.00125	0	2	1.57E-13	1	1	1	NA	NA	NA	NA
1351289	1206647267	PD9774b	2	235526854	G	A	-	-	-	-	-	-	41	0	0	49	13	26.53061224	0	0	NA	0	0	NA	1.658749733	1	0	0.341250267	2	0	0.658749733	unphased	1.621116618	0.977312361	1.658749733	0.00125	0.99875	0	0	2	2.71E-19	1	1	1	NA	NA	NA	NA
1351289	1206647268	PD9774b	2	235526855	G	A	-	-	-	-	-	-	41	0	0	48	13	27.08333333	0	0	NA	0	0	NA	1.658749733	1	0	0.341250267	2	0	0.658749733	unphased	1.654889881	0.997673035	1.658749733	0	1	0	0	2	2.00E-19	1	1	1	NA	NA	NA	NA
1351289	1206647311	PD9774b	2	236008891	C	A	-	-	-	-	-	-	30	0	0	61	5	8.196721311	0	0	NA	0	0	NA	1.658749733	1	0	0.341250267	2	0	0.658749733	unphased	0.500849396	0.760302997	0.658749733	0.00125	0.99875	0	0	2	1.47E-05	1	1	1	NA	NA	NA	NA
1351289	1206647779	PD9774b	2	241632172	C	A	AQP12A	CCDS2542.1	r.?	-	-	intronic	35	0	0	42	6	14.28571429	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.778801843	0.778801843	1	0.00375	0.99625	0	0	2	7.02E-08	1	1	1	NA	NA	NA	NA
1351289	1206647782	PD9774b	2	241645530	G	A	-	-	-	-	-	-	31	0	0	53	11	20.75471698	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.131466829	1.131466829	1	0.00125	0.99875	0	0	2	3.07E-15	1	1	1	NA	NA	NA	NA
1351289	1206648035	PD9774b	20	569385	T	A	-	-	-	-	-	-	31	0	0	47	8	17.0212766	0	0	NA	0	0	NA	0.828633896	0	0	0.171366104	1	0	0.828633896	unphased	0.898765413	1.084635105	0.828633896	0	1	0	0	2	1.03E-10	1	1	1	NA	NA	NA	NA
1351289	1206648268	PD9774b	20	3204962	G	A	SLC4A11	CCDS13052.1	r.?	-	-	downstream	31	0	0	52	6	11.53846154	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.744416873	0.744416873	1	0.00125	0.9975	0.00125	0	2	2.61E-07	1	1	1	NA	NA	NA	NA
1351289	1206648497	PD9774b	20	5303567	G	A	-	-	-	-	-	-	33	0	0	61	7	11.47540984	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.740349022	0.740349022	1	0.0025	0.9975	0	0	2	2.69E-08	1	1	1	NA	NA	NA	NA
1351289	1206648561	PD9774b	20	5971716	T	A	MCM8	CCDS13094.1	r.?	-	-	intronic	41	0	0	51	8	15.68627451	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.01201771	1.01201771	1	0	0.99875	0.00125	0	2	2.05E-10	1	1	1	NA	NA	NA	NA
1351289	1206648578	PD9774b	20	6126295	G	A	-	-	-	-	-	-	45	0	0	62	13	20.96774194	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.352757544	1.352757544	1	0	1	0	0	2	8.08E-18	1	1	1	NA	NA	NA	NA
1351289	1206648606	PD9774b	20	6554751	C	A	-	-	-	-	-	-	36	0	0	49	7	14.28571429	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.921658986	0.921658986	1	0	1	0	0	2	5.58E-09	1	1	1	NA	NA	NA	NA
1351289	1206648662	PD9774b	20	7359082	G	A	-	-	-	-	-	-	27	0	0	60	8	13.33333333	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.860215054	0.860215054	1	0.00125	0.9975	0.00125	0	2	7.93E-10	1	1	1	NA	NA	NA	NA
1351289	1206648947	PD9774b	20	10691141	T	A	-	-	-	-	-	-	25	1	4	26	7	26.92307692	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.736972705	1.736972705	1	0.0025	0.985	0.0125	0	2	4.73E-11	0.117779757	1	1	NA	NA	NA	NA
1351289	1206649078	PD9774b	20	12558916	C	A	-	-	-	-	-	-	37	0	0	62	9	14.51612903	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.936524454	0.936524454	1	0	1	0	0	2	3.12E-11	1	1	1	NA	NA	NA	NA
1351289	1206649255	PD9774b	20	14565297	G	A	MACROD2	CCDS13120.2	r.?	-	-	intronic	35	0	0	67	6	8.955223881	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.577756379	0.577756379	1	0.00625	0.99375	0	0	2	1.20E-06	1	1	1	NA	NA	NA	NA
1351289	1206649310	PD9774b	20	15349203	T	A	MACROD2	CCDS13120.2	r.?	-	-	intronic	36	0	0	51	8	15.68627451	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.01201771	1.01201771	1	0	0.9975	0.0025	0	2	2.05E-10	1	1	1	NA	NA	NA	NA
1351289	1206649396	PD9774b	20	16322458	G	A	KIF16B	CCDS13122.1	r.?	-	-	intronic	39	0	0	42	6	14.28571429	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.921658986	0.921658986	1	0.00125	0.99875	0	0	2	7.02E-08	1	1	1	NA	NA	NA	NA
1351289	1206649425	PD9774b	20	16683001	G	A	-	-	-	-	-	-	27	0	0	52	6	11.53846154	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.744416873	0.744416873	1	0.00375	0.99625	0	0	2	2.61E-07	1	1	1	NA	NA	NA	NA
1351289	1206649429	PD9774b	20	16753031	C	A	-	-	-	-	-	-	41	0	0	57	4	7.01754386	1	0	0	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.452744765	0.452744765	1	0.015	0.985	0	0	2	0.000199821	1	1	1	NA	NA	NA	NA
1351289	1206649543	PD9774b	20	18316731	G	A	-	-	-	-	-	-	34	0	0	44	8	18.18181818	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.173020528	1.173020528	1	0.00125	0.995	0.00375	0	2	5.90E-11	1	1	1	NA	NA	NA	NA
1351289	1206649617	PD9774b	20	18986707	T	A	-	-	-	-	-	-	30	0	0	47	8	17.0212766	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.098146877	1.098146877	1	0.0025	0.99625	0.00125	0	2	1.03E-10	1	1	1	NA	NA	NA	NA
1351289	1206649647	PD9774b	20	19552438	G	A	SLC24A3	CCDS13140.1	r.?	-	-	intronic	26	0	0	52	9	17.30769231	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.11662531	1.11662531	1	0.0025	0.9975	0	0	2	5.92E-12	1	1	1	NA	NA	NA	NA
1351289	1206649713	PD9774b	20	20221868	C	A	C20orf26	CCDS33447.1	r.?	-	-	intronic	34	0	0	56	8	14.28571429	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.921658986	0.921658986	1	0.00125	0.99875	0	0	2	4.48E-10	1	1	1	NA	NA	NA	NA
1351289	1206649746	PD9774b	20	20454277	C	A	RALGAPA2	CCDS46584.1	r.?	-	-	intronic	27	0	0	60	8	13.33333333	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.860215054	0.860215054	1	0.00125	0.99875	0	0	2	7.93E-10	1	1	1	NA	NA	NA	NA
1351289	1206649784	PD9774b	20	21001133	G	A	-	-	-	-	-	-	38	0	0	53	6	11.32075472	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.730371272	0.730371272	1	0.00125	0.99875	0	0	2	2.93E-07	1	1	1	NA	NA	NA	NA
1351289	1206649854	PD9774b	20	22224323	C	A	-	-	-	-	-	-	29	0	0	41	5	12.19512195	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.786782061	0.786782061	1	0.0025	0.9975	0	0	2	2.02E-06	1	1	1	NA	NA	NA	NA
1351289	1206649872	PD9774b	20	22442582	T	A	-	-	-	-	-	-	32	0	0	52	5	9.615384615	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.620347395	0.620347395	1	0.0075	0.9925	0	0	2	6.68E-06	1	1	1	NA	NA	NA	NA
1351289	1206649941	PD9774b	20	23574941	T	A	-	-	-	-	-	-	28	1	3.571428571	53	5	9.433962264	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.608642727	0.608642727	1	0.0075	0.9925	0	0	2	7.34E-06	0.130947004	1	1	NA	NA	NA	NA
1351289	1206649999	PD9774b	20	24044072	G	A	-	-	-	-	-	-	20	0	0	51	6	11.76470588	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.759013283	0.759013283	1	0.00375	0.99625	0	0	2	2.32E-07	1	1	1	NA	NA	NA	NA
1351289	1206650015	PD9774b	20	24163131	C	A	-	-	-	-	-	-	29	0	0	59	9	15.25423729	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.984144341	0.984144341	1	0.00125	0.99875	0	0	2	1.96E-11	1	1	1	NA	NA	NA	NA
1351289	1206655044	PD9774b	20	29807239	C	A	-	-	-	-	-	-	27	0	0	47	8	17.0212766	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.098146877	1.098146877	1	0	1	0	0	2	1.03E-10	1	1	1	NA	NA	NA	NA
1351289	1206655174	PD9774b	20	29851674	G	A	DEFB115	CCDS42859.1	r.?	-	-	downstream	41	0	0	54	7	12.96296296	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.836320191	0.836320191	1	0.00125	0.99875	0	0	2	1.13E-08	1	1	1	NA	NA	NA	NA
1351289	1206655366	PD9774b	20	31827923	G	A	PLUNC	CCDS13217.1	r.?	-	-	intronic	41	0	0	57	10	17.54385965	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.131861913	1.131861913	1	0	0.99875	0.00125	0	2	3.40E-13	1	1	1	NA	NA	NA	NA
1351289	1206655636	PD9774b	20	34602101	T	A	C20orf152	CCDS13270.1	r.?	-	-	intronic	15	0	0	26	4	15.38461538	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.992555831	0.992555831	1	0.00125	0.99875	0	0	2	8.56E-06	1	1	1	NA	NA	NA	NA
1351289	1206655669	PD9774b	20	35201404	C	A	TGIF2	CCDS13278.1	r.?	-	-	upstream	31	0	0	51	4	7.843137255	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.506008855	0.506008855	1	0.0025	0.9975	0	0	2	0.000129466	1	1	1	NA	NA	NA	NA
1351289	1206656191	PD9774b	20	43419671	C	A	RIMS4	CCDS13338.1	r.?	-	-	intronic	23	0	0	41	5	12.19512195	0	0	NA	0	0	NA	0.790269495	0	0	0.209730505	1	0	0.790269495	unphased	0.639253951	0.808906272	0.790269495	0.0025	0.9975	0	0	2	2.02E-06	1	1	1	NA	NA	NA	NA
1351289	1206656265	PD9774b	20	44542648	C	A	PLTP	CCDS13386.1	r.?	-	-	upstream	28	0	0	47	6	12.76595745	0	0	NA	0	0	NA	0.790269495	0	0	0.209730505	1	0	0.790269495	unphased	0.669176476	0.84676997	0.790269495	0.00375	0.995	0.00125	0	2	1.41E-07	1	1	1	NA	NA	NA	NA
1351289	1206656785	PD9774b	20	49408536	C	A	BCAS4	CCDS33487.1	r.?	-	-	upstream	30	0	0	38	9	23.68421053	0	0	NA	0	0	NA	1.580507337	1	0	0.419492663	1	1	0.580507337	unphased	1.428660057	1.428660057	1	0	0.9925	0.0075	0	2	2.79E-13	1	1	1	NA	NA	NA	NA
1351289	1206656820	PD9774b	20	49726759	G	A	-	-	-	-	-	-	38	0	0	45	9	20	0	0	NA	0	0	NA	1.580507337	1	0	0.419492663	1	1	0.580507337	unphased	1.206424048	1.206424048	1	0.00125	0.9925	0.00625	0	2	1.47E-12	1	1	1	NA	NA	NA	NA
1351289	1206656845	PD9774b	20	50192922	T	A	-	-	-	-	-	-	31	0	0	39	5	12.82051282	187	0	0	120	9	7.5	1.580507337	1	0	0.419492663	1	1	0.580507337	unphased	0.773348749	0.773348749	1	0.00125	0.99875	0	0	2	1.56E-06	1	1.24E-08	1	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206656978	PD9774b	20	51708790	C	A	TSHZ2	CCDS33490.1	r.?	-	-	intronic	39	0	0	59	7	11.86440678	0	0	NA	0	0	NA	1.580507337	1	0	0.419492663	1	1	0.580507337	unphased	0.715675283	1.23284451	0.580507337	0	1	0	0	2	2.12E-08	1	1	1	NA	NA	NA	NA
1351289	1206657185	PD9774b	20	53645938	G	A	-	-	-	-	-	-	33	0	0	48	5	10.41666667	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.672043011	0.672043011	1	0	1	0	0	2	4.47E-06	1	1	1	NA	NA	NA	NA
1351289	1206657211	PD9774b	20	54083012	G	A	-	-	-	-	-	-	28	0	0	50	6	12	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.774193548	0.774193548	1	0.00375	0.99625	0	0	2	2.06E-07	1	1	1	NA	NA	NA	NA
1351289	1206657242	PD9774b	20	54469825	G	A	-	-	-	-	-	-	36	0	0	58	7	12.06896552	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.778642937	0.778642937	1	0	1	0	0	2	1.88E-08	1	1	1	NA	NA	NA	NA
1351289	1206657651	PD9774b	20	59942026	G	A	CDH4	CCDS13488.1	r.?	-	-	intronic	32	0	0	45	5	11.11111111	0	0	NA	0	0	NA	1.438482126	1	0	0.561517874	1	1	0.438482126	unphased	0.654455003	0.654455003	1	0.005	0.99375	0.00125	0	2	3.23E-06	1	1	1	NA	NA	NA	NA
1351289	1206657677	PD9774b	20	60299275	G	A	CDH4	CCDS13488.1	r.?	-	-	intronic	29	0	0	33	4	12.12121212	0	0	NA	0	0	NA	1.438482126	1	0	0.561517874	1	1	0.438482126	unphased	0.713950913	0.713950913	1	0.00375	0.99625	0	0	2	2.28E-05	1	1	1	NA	NA	NA	NA
1351289	1206657702	PD9774b	20	60523111	G	A	-	-	-	-	-	-	38	0	0	57	5	8.771929825	0	0	NA	0	0	NA	1.438482126	1	0	0.561517874	1	1	0.438482126	unphased	0.516675003	1.178326259	0.438482126	0.00125	0.9975	0.00125	0	2	1.05E-05	1	1	1	NA	NA	NA	NA
1351289	1206657703	PD9774b	20	60523130	G	A	-	-	-	-	-	-	36	0	0	51	6	11.76470588	0	0	NA	0	0	NA	1.438482126	1	0	0.561517874	1	1	0.438482126	unphased	0.692952356	0.692952356	1	0.00375	0.99625	0	0	2	2.32E-07	1	1	1	NA	NA	NA	NA
1351289	1206657787	PD9774b	20	61736486	C	A	-	-	-	-	-	-	33	0	0	55	11	20	0	0	NA	0	0	NA	1.438482126	1	0	0.561517874	1	1	0.438482126	unphased	1.178019006	1.178019006	1	0	0.99875	0.00125	0	2	4.77E-15	1	1	1	NA	NA	NA	NA
1351289	1206665939	PD9774b	21	10496114	G	A	-	-	-	-	-	-	46	0	0	80	6	7.5	0	0	NA	0	0	NA	2.499191854	1	1	0.500808146	2	1	0.499191854	unphased	0.521310357	1.044308622	0.499191854	0	1	0	0	2	3.42E-06	1	1	1	NA	NA	NA	NA
1351289	1206665962	PD9774b	21	10556273	C	A	-	-	-	-	-	-	97	0	0	132	8	6.060606061	0	0	NA	0	0	NA	2.499191854	1	1	0.500808146	2	1	0.499191854	unphased	0.421260894	0.843885755	0.499191854	0	0.99875	0.00125	0	2	4.15E-07	1	1	1	NA	NA	NA	NA
1351289	1206668260	PD9774b	21	10877122	T	A	-	-	-	-	-	-	84	0	0	120	6	5	0	0	NA	0	0	NA	2.499191854	1	1	0.500808146	2	1	0.499191854	unphased	0.347540238	0.696205748	0.499191854	0.00375	0.99625	0	0	2	3.51E-05	1	1	1	NA	NA	NA	NA
1351289	1206672028	PD9774b	21	14526821	T	A	-	-	-	-	-	-	61	0	0	91	10	10.98901099	2	0	0	1	0	0	2.499191854	1	1	0.500808146	2	1	0.499191854	unphased	0.763824699	0.763824699	1	0.00125	0.99875	0	0	2	4.34E-11	1	1	1	NA	NA	NA	NA
1351289	1206672118	PD9774b	21	14791704	G	A	-	-	-	-	-	-	40	0	0	39	6	15.38461538	0	0	NA	0	0	NA	2.499191854	1	1	0.500808146	2	1	0.499191854	unphased	1.069354578	1.069354578	1	0	0.99875	0.00125	0	2	4.43E-08	1	1	1	NA	NA	NA	NA
1351289	1206672558	PD9774b	21	16076855	G	A	-	-	-	-	-	-	36	0	0	60	7	11.66666667	0	0	NA	0	0	NA	2.499191854	1	1	0.500808146	2	1	0.499191854	unphased	0.810927222	0.810927222	1	0.0025	0.9975	0	0	2	2.39E-08	1	1	1	NA	NA	NA	NA
1351289	1206672747	PD9774b	21	18148132	G	A	-	-	-	-	-	-	47	0	0	72	6	8.333333333	0	0	NA	0	0	NA	2.499191854	1	1	0.500808146	2	1	0.499191854	unphased	0.57923373	1.160342913	0.499191854	0	0.99875	0.00125	0	2	1.84E-06	1	1	1	NA	NA	NA	NA
1351289	1206673013	PD9774b	21	20917502	C	A	-	-	-	-	-	-	32	0	0	53	8	15.09433962	0	0	NA	0	0	NA	2.499191854	1	1	0.500808146	2	1	0.499191854	unphased	1.049178077	1.049178077	1	0	1	0	0	2	2.83E-10	1	1	1	NA	NA	NA	NA
1351289	1206673128	PD9774b	21	22023914	G	A	-	-	-	-	-	-	43	0	0	59	7	11.86440678	0	0	NA	0	0	NA	2.499191854	1	1	0.500808146	2	1	0.499191854	unphased	0.824671751	0.824671751	1	0.0025	0.9975	0	0	2	2.12E-08	1	1	1	NA	NA	NA	NA
1351289	1206673166	PD9774b	21	22416073	G	A	NCAM2	CCDS42910.1	r.?	-	-	intronic	27	0	0	51	11	21.56862745	0	0	NA	0	0	NA	2.499191854	1	1	0.500808146	2	1	0.499191854	unphased	1.499193183	1.499193183	1	0	0.99375	0.00625	0	2	1.94E-15	1	1	1	NA	NA	NA	NA
1351289	1206673188	PD9774b	21	22496960	G	A	NCAM2	CCDS42910.1	r.?	-	-	intronic	39	0	0	58	6	10.34482759	0	0	NA	0	0	NA	2.499191854	1	1	0.500808146	2	1	0.499191854	unphased	0.719048768	0.719048768	1	0.0025	0.9975	0	0	2	5.06E-07	1	1	1	NA	NA	NA	NA
1351289	1206673190	PD9774b	21	22503993	G	A	NCAM2	CCDS42910.1	r.?	-	-	intronic	37	0	0	56	12	21.42857143	0	0	NA	0	0	NA	2.499191854	1	1	0.500808146	2	1	0.499191854	unphased	1.489458162	1.489458162	1	0	0.99	0.01	0	2	1.11E-16	1	1	1	NA	NA	NA	NA
1351289	1206673217	PD9774b	21	22695027	C	A	NCAM2	CCDS42910.1	r.?	-	-	intronic	25	0	0	53	13	24.52830189	0	0	NA	0	0	NA	2.499191854	1	1	0.500808146	2	1	0.499191854	unphased	1.704914374	1.137222277	1.499191854	0	0.99875	0.00125	0	2	8.53E-19	1	1	1	NA	NA	NA	NA
1351289	1206673267	PD9774b	21	23228060	G	A	-	-	-	-	-	-	42	0	0	67	11	16.41791045	0	0	NA	0	0	NA	2.499191854	1	1	0.500808146	2	1	0.499191854	unphased	1.1411769	1.1411769	1	0	0.99875	0.00125	0	2	4.85E-14	1	1	1	NA	NA	NA	NA
1351289	1206673354	PD9774b	21	23930423	C	A	-	-	-	-	-	-	41	0	0	51	4	7.843137255	0	0	NA	0	0	NA	2.499191854	1	1	0.500808146	2	1	0.499191854	unphased	0.545161157	1.092087447	0.499191854	0	0.9975	0.0025	0	2	0.000129466	1	1	1	NA	NA	NA	NA
1351289	1206673671	PD9774b	21	27189249	G	A	AP001441.1	ENST00000509807	r.?	-	-	intronic	47	0	0	59	5	8.474576271	0	0	NA	0	0	NA	1.797718639	1	0	0.202281361	1	1	0.797718639	unphased	0.529604368	0.663898701	0.797718639	0.00125	0.99875	0	0	2	1.25E-05	1	1	1	NA	NA	NA	NA
1351289	1206673707	PD9774b	21	27626561	T	A	-	-	-	-	-	-	30	0	0	54	4	7.407407407	0	0	NA	0	0	NA	1.797718639	1	0	0.202281361	1	1	0.797718639	unphased	0.462913448	0.580296642	0.797718639	0.00375	0.99625	0	0	2	0.000161898	1	1	1	NA	NA	NA	NA
1351289	1206673826	PD9774b	21	29005238	G	A	-	-	-	-	-	-	38	0	0	68	8	11.76470588	0	0	NA	0	0	NA	1.797718639	1	0	0.202281361	1	1	0.797718639	unphased	0.735215476	0.921647608	0.797718639	0	1	0	0	2	2.21E-09	1	1	1	NA	NA	NA	NA
1351289	1206673901	PD9774b	21	29717603	C	A	-	-	-	-	-	-	43	0	0	54	5	9.259259259	0	0	NA	0	0	NA	1.797718639	1	0	0.202281361	1	1	0.797718639	unphased	0.578641809	0.725370803	0.797718639	0.00125	0.99875	0	0	2	8.06E-06	1	1	1	NA	NA	NA	NA
1351289	1206673990	PD9774b	21	30767121	T	A	BACH1	ENST00000422809	r.?	-	-	intronic	39	0	0	53	12	22.64150943	0	0	NA	0	0	NA	1.797718639	1	0	0.202281361	1	1	0.797718639	unphased	1.414942991	1.414942991	1	0	0.99875	0.00125	0	2	5.39E-17	1	1	1	NA	NA	NA	NA
1351289	1206674039	PD9774b	21	31417763	G	A	-	-	-	-	-	-	32	0	0	59	8	13.55932203	0	0	NA	0	0	NA	1.797718639	1	0	0.202281361	1	1	0.797718639	unphased	0.847366989	1.062237921	0.797718639	0	1	0	0	2	6.90E-10	1	1	1	NA	NA	NA	NA
1351289	1206674085	PD9774b	21	32026096	T	A	-	-	-	-	-	-	46	0	0	54	7	12.96296296	0	0	NA	0	0	NA	1.797718639	1	0	0.202281361	1	1	0.797718639	unphased	0.810098533	1.015519124	0.797718639	0.00125	0.99875	0	0	2	1.13E-08	1	1	1	NA	NA	NA	NA
1351289	1206674447	PD9774b	21	34734574	G	A	IFNAR1	CCDS13624.1	r.?	-	-	downstream	27	0	0	67	7	10.44776119	0	0	NA	0	0	NA	1.797718639	1	0	0.202281361	1	1	0.797718639	unphased	0.652915236	0.8184781	0.797718639	0.00375	0.99625	0	0	2	5.23E-08	1	1	1	NA	NA	NA	NA
1351289	1206674666	PD9774b	21	37173515	C	A	-	-	-	-	-	-	32	0	0	54	8	14.81481481	0	0	NA	0	0	NA	2.608470272	1	1	0.391529728	2	1	0.608470272	unphased	1.045938248	1.045938248	1	0	0.99875	0.00125	0	2	3.31E-10	1	1	1	NA	NA	NA	NA
1351289	1206674997	PD9774b	21	40571870	G	A	BRWD1	CCDS13663.1	r.?	-	-	intronic	30	0	0	52	6	11.53846154	0	0	NA	0	0	NA	2.608470272	1	1	0.391529728	2	1	0.608470272	unphased	0.814624982	0.814624982	1	0.0025	0.9975	0	0	2	2.61E-07	1	1	1	NA	NA	NA	NA
1351289	1206675040	PD9774b	21	41080649	G	A	-	-	-	-	-	-	27	0	0	40	10	25	0	0	NA	0	0	NA	2.608470272	1	1	0.391529728	2	1	0.608470272	unphased	1.765020794	1.097328825	1.608470272	0	0.99875	0.00125	0	2	7.22E-15	1	1	1	NA	NA	NA	NA
1351289	1206675084	PD9774b	21	41371428	G	A	-	-	-	-	-	-	39	0	0	63	9	14.28571429	1	0	0	0	0	NA	2.608470272	1	1	0.391529728	2	1	0.608470272	unphased	1.008583311	1.008583311	1	0.00125	0.99875	0	0	2	3.62E-11	1	1	1	NA	NA	NA	NA
1351289	1206675301	PD9774b	21	43836695	G	A	UBASH3A	CCDS13687.1	r.843g>a	c.812G>A	p.R271Q	missense	37	0	0	66	5	7.575757576	0	0	NA	0	0	NA	0.13073868	0	0	0.86926132	1	0	0.13073868	unphased	0.347147847	0.347147847	1	0.06875	0.93125	0	0	2	2.17E-05	1	1	1	NA	NA	NA	NA
1351289	1206675441	PD9774b	21	45003246	T	A	HSF2BP	CCDS13697.1	r.?	-	-	intronic	14	0	0	21	3	14.28571429	0	0	NA	0	0	NA	0.13073868	0	0	0.86926132	1	0	0.13073868	unphased	0.654621655	0.654621655	1	0.0025	0.9975	0	0	2	0.000155401	1	1	1	NA	NA	NA	NA
1351289	1206675586	PD9774b	21	46752990	C	A	-	-	-	-	-	-	25	0	0	36	4	11.11111111	0	0	NA	0	0	NA	0.13073868	0	0	0.86926132	1	0	0.13073868	unphased	0.509150176	0.509150176	1	0.00875	0.99125	0	0	2	3.24E-05	1	1	1	NA	NA	NA	NA
1351289	1206675620	PD9774b	21	47241541	G	A	PCBP3	CCDS42974.2	r.?	-	-	intronic	39	0	0	47	8	17.0212766	0	0	NA	0	0	NA	0.13073868	0	0	0.86926132	1	0	0.13073868	unphased	0.779974738	0.779974738	1	0.0025	0.9975	0	0	2	1.03E-10	1	1	1	NA	NA	NA	NA
1351289	1206677579	PD9774b	22	20231945	C	A	RTN4R	CCDS13777.1	r.?	-	-	intronic	33	0	0	43	9	20.93023256	0	0	NA	0	0	NA	0.677534538	0	0	0.322465462	1	0	0.677534538	unphased	1.073542488	1.073542488	1	0.0025	0.99625	0.00125	0	2	9.45E-13	1	1	1	NA	NA	NA	NA
1351289	1206677602	PD9774b	22	20362359	G	A	GGTLC3	ENST00000404912	r.?	-	-	downstream	12	0	0	22	4	18.18181818	0	0	NA	0	0	NA	0.677534538	0	0	0.322465462	1	0	0.677534538	unphased	0.932572262	0.932572262	1	0.0025	0.9975	0	0	2	4.25E-06	1	1	1	NA	NA	NA	NA
1351289	1206678000	PD9774b	22	22811153	G	A	-	-	-	-	-	-	29	0	0	47	9	19.14893617	0	0	NA	0	0	NA	0.677534538	0	0	0.322465462	1	0	0.677534538	unphased	0.98217717	0.98217717	1	0.00125	0.99875	0	0	2	2.24E-12	1	1	1	NA	NA	NA	NA
1351289	1206678509	PD9774b	22	27488446	T	A	-	-	-	-	-	-	30	0	0	49	5	10.20408163	0	0	NA	0	0	NA	0.677534538	0	0	0.322465462	1	0	0.677534538	unphased	0.523382392	0.772480755	0.677534538	0	1	0	0	2	4.96E-06	1	1	1	NA	NA	NA	NA
1351289	1206679021	PD9774b	22	32970609	C	A	SYN3	CCDS13908.1	r.?	-	-	intronic	30	0	0	50	11	22	0	0	NA	0	0	NA	0.736598606	0	0	0.263401394	1	0	0.736598606	unphased	1.141406532	1.141406532	1	0	1	0	0	2	1.52E-15	1	1	1	NA	NA	NA	NA
1351289	1206679207	PD9774b	22	35455753	C	A	-	-	-	-	-	-	25	0	0	43	4	9.302325581	0	0	NA	0	0	NA	0.736598606	0	0	0.263401394	1	0	0.736598606	unphased	0.482624326	0.655206679	0.736598606	0.00125	0.99875	0	0	2	6.60E-05	1	1	1	NA	NA	NA	NA
1351289	1206679396	PD9774b	22	37562848	C	A	IL2RB	ENST00000453962	r.?	-	-	intronic	44	0	0	50	10	20	0	0	NA	0	0	NA	0.736598606	0	0	0.263401394	1	0	0.736598606	unphased	1.037642302	1.037642302	1	0	0.99875	0.00125	0	2	8.36E-14	1	1	1	NA	NA	NA	NA
1351289	1206679706	PD9774b	22	40739746	G	A	ADSL	CCDS14001.1	r.?	-	-	upstream	34	0	0	40	9	22.5	0	0	NA	0	0	NA	0.736598606	0	0	0.263401394	1	0	0.736598606	unphased	1.16734759	1.16734759	1	0	1	0	0	2	4.64E-13	1	1	1	NA	NA	NA	NA
1351289	1206680094	PD9774b	22	44474641	G	A	PARVB	CCDS14056.1	r.?	-	-	intronic	41	0	0	46	7	15.2173913	0	0	NA	0	0	NA	1.16591663	1	0	0.83408337	2	0	0.16591663	unphased	0.854841451	0.854841451	1	0	1	0	0	2	3.53E-09	1	1	1	NA	NA	NA	NA
1351289	1206680845	PD9774b	3	139725	C	A	-	-	-	-	-	-	29	0	0	43	9	20.93023256	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	1.107613543	1.107613543	1	0.00125	0.99875	0	0	2	9.45E-13	1	1	1	NA	NA	NA	NA
1351289	1206680846	PD9774b	3	151100	G	A	-	-	-	-	-	-	32	0	0	42	7	16.66666667	251	2	0.796812749	230	31	13.47826087	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	0.881988562	1.049588451	0.840318471	0	0.99875	0.00125	0	2	1.81E-09	1	4.24E-34	0.357382269	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206680849	PD9774b	3	158844	C	A	-	-	-	-	-	-	42	0	0	51	8	15.68627451	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	0.830106882	0.987847954	0.840318471	0.00125	0.99875	0	0	2	2.05E-10	1	1	1	NA	NA	NA	NA
1351289	1206680859	PD9774b	3	213441	T	A	-	-	-	-	-	-	26	0	0	38	5	13.15789474	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	0.69630676	0.828622461	0.840318471	0.0025	0.9975	0	0	2	1.37E-06	1	1	1	NA	NA	NA	NA
1351289	1206681287	PD9774b	3	4889866	G	A	ITPR1	CCDS46740.1	r.?	-	-	downstream	26	0	0	59	13	22.03389831	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	1.166018777	1.166018777	1	0	0.99875	0.00125	0	2	3.99E-18	1	1	1	NA	NA	NA	NA
1351289	1206681384	PD9774b	3	5684185	T	A	-	-	-	-	-	-	41	0	0	37	9	24.32432432	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	1.28722655	1.28722655	1	0	0.99625	0.00375	0	2	2.14E-13	1	1	1	NA	NA	NA	NA
1351289	1206681424	PD9774b	3	6325583	C	A	-	-	-	-	-	-	26	0	0	40	9	22.5	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	1.190684559	1.190684559	1	0.00125	0.99875	0	0	2	4.64E-13	1	1	1	NA	NA	NA	NA
1351289	1206681436	PD9774b	3	6444943	G	A	-	-	-	-	-	-	26	0	0	43	9	20.93023256	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	1.107613543	1.107613543	1	0.00125	0.9975	0.00125	0	2	9.45E-13	1	1	1	NA	NA	NA	NA
1351289	1206681797	PD9774b	3	11335840	G	A	ATG7	CCDS2605.1	r.?	-	-	intronic	24	0	0	32	4	12.5	2	0	0	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	0.661491422	0.787191338	0.840318471	0.00125	0.9975	0.00125	0	2	2.01E-05	1	1	1	NA	NA	NA	NA
1351289	1206682016	PD9774b	3	14008767	T	A	TPRXL	ENST00000326972	r.?	-	-	intronic	30	0	0	40	4	10	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	0.529193137	0.629753071	0.840318471	0.0025	0.9975	0	0	2	4.95E-05	1	1	1	NA	NA	NA	NA
1351289	1206682179	PD9774b	3	16102522	G	A	-	-	-	-	-	-	24	0	0	40	7	17.5	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	0.92608799	0.92608799	1	0.0025	0.9975	0	0	2	1.26E-09	1	1	1	NA	NA	NA	NA
1351289	1206682187	PD9774b	3	16198043	C	A	-	-	-	-	-	-	34	0	0	49	5	10.20408163	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	0.539992997	0.642605174	0.840318471	0.005	0.995	0	0	2	4.96E-06	1	1	1	NA	NA	NA	NA
1351289	1206682286	PD9774b	3	17923411	C	A	-	-	-	-	-	-	18	0	0	47	10	21.27659574	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	1.125942846	1.125942846	1	0.00125	0.99875	0	0	2	4.27E-14	1	1	1	NA	NA	NA	NA
1351289	1206682301	PD9774b	3	18345859	C	A	-	-	-	-	-	-	39	0	0	56	7	12.5	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	0.661491422	0.787191338	0.840318471	0.0025	0.9975	0	0	2	1.46E-08	1	1	1	NA	NA	NA	NA
1351289	1206682664	PD9774b	3	23201503	G	A	-	-	-	-	-	-	40	0	0	58	6	10.34482759	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	0.547441177	0.651468694	0.840318471	0.00625	0.99375	0	0	2	5.06E-07	1	1	1	NA	NA	NA	NA
1351289	1206682674	PD9774b	3	23273007	G	A	UBE2E2	CCDS2637.1	r.?	-	-	intronic	35	0	0	51	6	11.76470588	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	0.622580162	0.740885966	0.840318471	0.00375	0.99625	0	0	2	2.32E-07	1	1	1	NA	NA	NA	NA
1351289	1206682781	PD9774b	3	24643922	G	A	-	-	-	-	-	-	29	0	0	52	9	17.30769231	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	0.915911199	0.915911199	1	0	1	0	0	2	5.92E-12	1	1	1	NA	NA	NA	NA
1351289	1206682881	PD9774b	3	26340471	C	A	-	-	-	-	-	-	31	0	0	43	5	11.62790698	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	0.615340857	0.732271012	0.840318471	0.00125	0.99875	0	0	2	2.57E-06	1	1	1	NA	NA	NA	NA
1351289	1206683019	PD9774b	3	28200313	T	A	-	-	-	-	-	-	37	0	0	48	8	16.66666667	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	0.881988562	1.049588451	0.840318471	0	1	0	0	2	1.23E-10	1	1	1	NA	NA	NA	NA
1351289	1206683443	PD9774b	3	34101414	C	A	-	-	-	-	-	-	47	0	0	45	14	31.11111111	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	1.64637865	1.64637865	1	0	0.9775	0.0225	0	2	8.81E-22	1	1	1	NA	NA	NA	NA
1351289	1206683605	PD9774b	3	36785416	G	A	DCLK3	CCDS43064.1	r.?	-	-	upstream	33	0	0	48	6	12.5	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	0.661491422	0.787191338	0.840318471	0.00125	0.9975	0.00125	0	2	1.60E-07	1	1	1	NA	NA	NA	NA
1351289	1206683817	PD9774b	3	39807017	T	A	-	-	-	-	-	-	41	0	0	51	9	17.64705882	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	0.933870242	0.933870242	1	0	1	0	0	2	4.92E-12	1	1	1	NA	NA	NA	NA
1351289	1206683852	PD9774b	3	40318418	G	A	-	-	-	-	-	-	33	0	0	56	12	21.42857143	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	1.133985294	1.133985294	1	0	1	0	0	2	1.11E-16	1	1	1	NA	NA	NA	NA
1351289	1206684035	PD9774b	3	42923424	T	A	ENSG00000240747	ENST00000426937	r.?	-	-	intronic	24	0	0	41	6	14.63414634	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	0.774428982	0.92158986	0.840318471	0.00125	0.99875	0	0	2	6.05E-08	1	1	1	NA	NA	NA	NA
1351289	1206684411	PD9774b	3	48203263	T	A	CDC25A	CCDS2760.1	r.?	-	-	intronic	36	0	0	53	16	30.18867925	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	1.597564188	1.597564188	1	0	0.9725	0.0275	0	2	1.90E-24	1	1	1	NA	NA	NA	NA
1351289	1206684665	PD9774b	3	51060246	T	A	DOCK3	CCDS46835.1	r.?	-	-	intronic	41	0	0	48	4	8.333333333	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	0.440994281	0.524794226	0.840318471	0.0075	0.9925	0	0	2	0.000102016	1	1	1	NA	NA	NA	NA
1351289	1206684930	PD9774b	3	54527328	T	A	CACNA2D3	ENST00000474759	r.?	-	-	intronic	33	0	0	42	10	23.80952381	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	1.259983661	1.259983661	1	0	0.99625	0.00375	0	2	1.24E-14	1	1	1	NA	NA	NA	NA
1351289	1206685048	PD9774b	3	56190023	T	A	ERC2	CCDS46851.1	r.?	-	-	intronic	37	0	0	40	7	17.5	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	0.92608799	0.92608799	1	0.0025	0.9975	0	0	2	1.26E-09	1	1	1	NA	NA	NA	NA
1351289	1206685323	PD9774b	3	59840840	C	A	FHIT	CCDS2894.1	r.?	-	-	intronic	30	0	0	44	10	22.72727273	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	1.202711676	1.202711676	1	0	1	0	0	2	2.08E-14	1	1	1	NA	NA	NA	NA
1351289	1206685381	PD9774b	3	60635745	C	A	FHIT	CCDS2894.1	r.?	-	-	intronic	38	0	0	49	4	8.163265306	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	0.431994398	0.514084139	0.840318471	0.00875	0.99125	0	0	2	0.000110643	1	1	1	NA	NA	NA	NA
1351289	1206685382	PD9774b	3	60635746	C	A	FHIT	CCDS2894.1	r.?	-	-	intronic	38	0	0	49	4	8.163265306	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	0.431994398	0.514084139	0.840318471	0.005	0.995	0	0	2	0.000110643	1	1	1	NA	NA	NA	NA
1351289	1206685719	PD9774b	3	65206540	G	A	-	-	-	-	-	-	34	0	0	52	14	26.92307692	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	1.424750755	1.424750755	1	0	0.99375	0.00625	0	2	9.04E-21	1	1	1	NA	NA	NA	NA
1351289	1206686209	PD9774b	3	72571951	C	A	-	-	-	-	-	-	37	0	0	53	8	15.09433962	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	0.798782094	0.950570673	0.840318471	0.00125	0.9975	0.00125	0	2	2.83E-10	1	1	1	NA	NA	NA	NA
1351289	1206686307	PD9774b	3	73622233	G	A	PDZRN3	CCDS33789.1	r.?	-	-	intronic	23	0	0	40	6	15	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	0.793789706	0.944629606	0.840318471	0.00125	0.99625	0.0025	0	2	5.18E-08	1	1	1	NA	NA	NA	NA
1351289	1206686353	PD9774b	3	74352761	T	A	CNTN3	CCDS33790.1	r.?	-	-	intronic	34	0	0	42	6	14.28571429	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	0.755990196	0.899647244	0.840318471	0.00125	0.9975	0.00125	0	2	7.02E-08	1	1	1	NA	NA	NA	NA
1351289	1206689135	PD9774b	3	77864809	C	A	-	-	-	-	-	-	34	0	0	40	6	15	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	0.793789706	0.944629606	0.840318471	0	1	0	0	2	5.18E-08	1	1	1	NA	NA	NA	NA
1351289	1206689409	PD9774b	3	82255815	G	A	-	-	-	-	-	-	42	0	0	50	9	18	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	0.952547647	0.952547647	1	0	1	0	0	2	4.07E-12	1	1	1	NA	NA	NA	NA
1351289	1206689549	PD9774b	3	84401020	G	A	-	-	-	-	-	-	36	0	0	55	9	16.36363636	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	0.865952407	1.030505025	0.840318471	0	0.9975	0.0025	0	2	1.01E-11	1	1	1	NA	NA	NA	NA
1351289	1206689694	PD9774b	3	86027603	C	A	CADM2	CCDS33792.1	r.?	-	-	intronic	33	0	0	63	13	20.63492063	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	1.091985839	1.091985839	1	0	0.9975	0.0025	0	2	1.01E-17	1	1	1	NA	NA	NA	NA
1351289	1206689695	PD9774b	3	86128353	T	A	-	-	-	-	-	-	36	0	0	69	12	17.39130435	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	0.920335891	0.920335891	1	0.00125	0.9975	0.00125	0	2	1.65E-15	1	1	1	NA	NA	NA	NA
1351289	1206689696	PD9774b	3	86128354	T	A	-	-	-	-	-	-	36	0	0	70	13	18.57142857	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	0.982787255	0.982787255	1	0	1	0	0	2	4.44E-17	1	1	1	NA	NA	NA	NA
1351289	1206689769	PD9774b	3	87124918	T	A	-	-	-	-	-	-	36	0	0	67	11	16.41791045	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.059220029	1.059220029	1	0.00125	0.99875	0	0	2	4.85E-14	1	1	1	NA	NA	NA	NA
1351289	1206689918	PD9774b	3	88851008	C	A	-	-	-	-	-	-	39	0	0	55	7	12.72727273	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.82111437	0.82111437	1	0.00125	0.99875	0	0	2	1.28E-08	1	1	1	NA	NA	NA	NA
1351289	1206689928	PD9774b	3	88984605	T	A	-	-	-	-	-	-	39	0	0	61	8	13.1147541	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.846113168	0.846113168	1	0.00125	0.99875	0	0	2	9.09E-10	1	1	1	NA	NA	NA	NA
1351289	1206689974	PD9774b	3	89577561	C	A	-	-	-	-	-	-	29	0	0	69	11	15.94202899	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.028517999	1.028517999	1	0	0.99875	0.00125	0	2	6.82E-14	1	1	1	NA	NA	NA	NA
1351289	1206690680	PD9774b	3	94938826	C	A	-	-	-	-	-	-	43	0	0	60	5	8.333333333	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.537634409	0.537634409	1	0.01	0.99	0	0	2	1.36E-05	1	1	1	NA	NA	NA	NA
1351289	1206690685	PD9774b	3	95034971	T	A	-	-	-	-	-	-	38	0	0	59	7	11.86440678	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.765445599	0.765445599	1	0.00375	0.99625	0	0	2	2.12E-08	1	1	1	NA	NA	NA	NA
1351289	1206690698	PD9774b	3	95152390	G	A	-	-	-	-	-	-	35	0	0	52	8	15.38461538	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.992555831	0.992555831	1	0.00125	0.99875	0	0	2	2.42E-10	1	1	1	NA	NA	NA	NA
1351289	1206690702	PD9774b	3	95199658	G	A	-	-	-	-	-	-	29	0	0	67	8	11.94029851	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.770341839	0.770341839	1	0.0025	0.99625	0.00125	0	2	1.96E-09	1	1	1	NA	NA	NA	NA
1351289	1206690807	PD9774b	3	96604149	C	A	EPHA6	CCDS46876.1	r.?	-	-	intronic	31	0	0	48	9	18.75	0	0	NA	1	0	0	2	1	1	1	NA	NA	NA	unphased	1.209677419	1.209677419	1	0	0.9975	0.0025	0	2	2.75E-12	1	1	1	NA	NA	NA	NA
1351289	1206690865	PD9774b	3	97611391	C	A	CRYBG3	CCDS43113.1	r.?	-	-	intronic	33	0	0	61	4	6.557377049	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.423056584	0.423056584	1	0.01375	0.98625	0	0	2	0.000259828	1	1	1	NA	NA	NA	NA
1351289	1206691089	PD9774b	3	100649874	G	A	ABI3BP	CCDS46880.1	r.?	-	-	intronic	39	0	0	55	7	12.72727273	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.82111437	0.82111437	1	0.00375	0.99625	0	0	2	1.28E-08	1	1	1	NA	NA	NA	NA
1351289	1206691199	PD9774b	3	101681858	C	A	-	-	-	-	-	-	36	0	0	59	10	16.94915254	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.093493712	1.093493712	1	0	0.99875	0.00125	0	2	4.91E-13	1	1	1	NA	NA	NA	NA
1351289	1206691255	PD9774b	3	102820655	C	A	-	-	-	-	-	-	34	0	0	68	13	19.11764706	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.233396584	1.233396584	1	0	0.99875	0.00125	0	2	2.96E-17	1	1	1	NA	NA	NA	NA
1351289	1206691277	PD9774b	3	103084845	T	A	-	-	-	-	-	-	36	0	0	49	5	10.20408163	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.658327847	0.658327847	1	0.005	0.995	0	0	2	4.96E-06	1	1	1	NA	NA	NA	NA
1351289	1206691516	PD9774b	3	105801962	G	A	-	-	-	-	-	-	39	0	0	61	8	13.1147541	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.846113168	0.846113168	1	0	1	0	0	2	9.09E-10	1	1	1	NA	NA	NA	NA
1351289	1206691611	PD9774b	3	106872075	T	A	-	-	-	-	-	-	33	0	0	42	4	9.523809524	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	0.528737182	0.528737182	1	0.00625	0.99375	0	0	2	6.01E-05	1	1	1	NA	NA	NA	NA
1351289	1206691794	PD9774b	3	109366753	C	A	-	-	-	-	-	-	49	0	0	37	6	16.21621622	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	0.900282229	0.900282229	1	0.00125	0.9975	0.00125	0	2	3.18E-08	1	1	1	NA	NA	NA	NA
1351289	1206692173	PD9774b	3	114209108	G	A	ZBTB20	CCDS2981.1	r.?	-	-	intronic	38	0	0	40	8	20	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	1.110348082	1.110348082	1	0.00125	0.9975	0.00125	0	2	2.61E-11	1	1	1	NA	NA	NA	NA
1351289	1206692523	PD9774b	3	119145941	C	A	TMEM39A	CCDS2987.1	r.?	-	-	downstream	29	0	0	59	11	18.6440678	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	1.035070246	1.035070246	1	0.00125	0.99875	0	0	2	1.10E-14	1	1	1	NA	NA	NA	NA
1351289	1206692746	PD9774b	3	121995278	G	A	CASR	CCDS3010.1	r.?	-	-	intronic	25	0	0	51	7	13.7254902	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	0.762003586	0.762003586	1	0.00125	0.99875	0	0	2	7.46E-09	1	1	1	NA	NA	NA	NA
1351289	1206692765	PD9774b	3	122337714	T	A	PARP15	CCDS46893.1	r.?	-	-	intronic	30	0	0	42	6	14.28571429	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	0.793105773	0.793105773	1	0.00125	0.99875	0	0	2	7.02E-08	1	1	1	NA	NA	NA	NA
1351289	1206692912	PD9774b	3	124654326	C	A	MUC13	CCDS33839.1	r.?	-	-	upstream	38	0	0	35	6	17.14285714	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	0.951726927	0.951726927	1	0	1	0	0	2	2.24E-08	1	1	1	NA	NA	NA	NA
1351289	1206693130	PD9774b	3	126911683	C	A	C3orf56	ENST00000398112	r.?	-	-	upstream	37	0	0	43	4	9.302325581	2	0	0	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	0.516440968	0.516440968	1	0.005	0.995	0	0	2	6.60E-05	1	1	1	NA	NA	NA	NA
1351289	1206693423	PD9774b	3	130313125	G	A	COL6A6	CCDS46911.1	r.4502g>a	c.4471G>A	p.G1491R	missense	25	0	0	55	9	16.36363636	168	0	0	141	18	12.76595745	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	0.908466613	0.908466613	1	0.00125	0.99875	0	0	2	1.01E-11	1	5.19E-20	1	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206693637	PD9774b	3	133401388	G	A	-	-	-	-	-	-	23	0	0	42	4	9.523809524	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	0.528737182	0.528737182	1	0.00125	0.99875	0	0	2	6.01E-05	1	1	1	NA	NA	NA	NA
1351289	1206693714	PD9774b	3	134685030	T	A	EPHB1	CCDS46921.1	r.?	-	-	intronic	36	0	0	46	10	21.73913043	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	1.206900089	1.206900089	1	0.00125	0.99875	0	0	2	3.38E-14	1	1	1	NA	NA	NA	NA
1351289	1206693767	PD9774b	3	135576964	G	A	-	-	-	-	-	-	23	0	0	43	6	13.95348837	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	0.774661453	0.774661453	1	0.0025	0.99625	0.00125	0	2	8.13E-08	1	1	1	NA	NA	NA	NA
1351289	1206693858	PD9774b	3	136945917	C	A	-	-	-	-	-	-	40	0	0	48	5	10.41666667	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	0.578306293	0.578306293	1	0.0075	0.9925	0	0	2	4.47E-06	1	1	1	NA	NA	NA	NA
1351289	1206693867	PD9774b	3	137091594	G	A	-	-	-	-	-	-	34	0	0	45	5	11.11111111	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	0.616860046	0.616860046	1	0.005	0.995	0	0	2	3.23E-06	1	1	1	NA	NA	NA	NA
1351289	1206694018	PD9774b	3	138896234	T	A	MRPS22	CCDS3107.1	r.?	-	-	intronic	42	0	0	62	13	20.96774194	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	1.164074602	1.164074602	1	0	1	0	0	2	8.08E-18	1	1	1	NA	NA	NA	NA
1351289	1206694036	PD9774b	3	139158908	T	A	-	-	-	-	-	-	42	0	0	88	25	28.40909091	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	1.57719898	1.57719898	1	0	0.92875	0.07125	0	2	1.33E-36	1	1	1	NA	NA	NA	NA
1351289	1206694404	PD9774b	3	143131220	G	A	SLC9A9	CCDS33872.1	r.?	-	-	intronic	34	0	0	67	17	25.37313433	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	1.408650552	1.408650552	1	0	0.9875	0.0125	0	2	2.03E-24	1	1	1	NA	NA	NA	NA
1351289	1206694424	PD9774b	3	143362458	C	A	SLC9A9	CCDS33872.1	r.?	-	-	intronic	39	0	0	78	9	11.53846154	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	0.640585432	0.640585432	1	0.00375	0.99625	0	0	2	2.61E-10	1	1	1	NA	NA	NA	NA
1351289	1206694433	PD9774b	3	143472789	G	A	SLC9A9	CCDS33872.1	r.?	-	-	intronic	33	0	0	50	7	14	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	0.777243657	0.777243657	1	0.00375	0.99625	0	0	2	6.46E-09	1	1	1	NA	NA	NA	NA
1351289	1206694770	PD9774b	3	147181026	G	A	-	-	-	-	-	-	35	0	0	78	8	10.25641026	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	0.569409273	0.569409273	1	0.005	0.995	0	0	2	6.71E-09	1	1	1	NA	NA	NA	NA
1351289	1206695062	PD9774b	3	150282158	C	A	EIF2A	CCDS46935.1	r.574c>a	c.465C>A	p.N155K	missense	46	0	0	63	24	38.0952381	218	1	0.458715596	236	74	31.3559322	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	2.114948728	2.114948728	1	0	0.23125	0.7675	0.00125	3	7.74E-39	1	7.34E-109	0.664701506	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206695257	PD9774b	3	152287836	C	A	-	-	-	-	-	-	42	0	0	57	9	15.78947368	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	0.876590591	0.876590591	1	0.00125	0.99875	0	0	2	1.42E-11	1	1	1	NA	NA	NA	NA
1351289	1206695309	PD9774b	3	152708128	C	A	-	-	-	-	-	-	37	0	0	56	10	17.85714286	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	0.991382216	0.991382216	1	0	1	0	0	2	2.82E-13	1	1	1	NA	NA	NA	NA
1351289	1206695352	PD9774b	3	152917138	C	A	-	-	-	-	-	-	39	0	0	70	13	18.57142857	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	1.031037505	1.031037505	1	0	1	0	0	2	4.44E-17	1	1	1	NA	NA	NA	NA
1351289	1206695362	PD9774b	3	152997594	G	A	-	-	-	-	-	-	33	0	0	60	15	25	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	1.387935103	1.387935103	1	0	0.99	0.01	0	2	1.31E-21	1	1	1	NA	NA	NA	NA
1351289	1206695397	PD9774b	3	153257433	T	A	-	-	-	-	-	-	38	0	0	59	14	23.72881356	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	1.317362131	1.317362131	1	0	0.99375	0.00625	0	2	6.58E-20	1	1	1	NA	NA	NA	NA
1351289	1206695418	PD9774b	3	153455189	T	A	-	-	-	-	-	-	29	0	0	67	4	5.970149254	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	0.331447189	0.331447189	1	0.03875	0.96125	0	0	2	0.000372648	1	1	1	NA	NA	NA	NA
1351289	1206695492	PD9774b	3	154394630	C	A	-	-	-	-	-	-	27	0	0	68	10	14.70588235	0	0	NA	1	0	0	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	0.816432413	0.816432413	1	0.00125	0.99875	0	0	2	2.18E-12	1	1	1	NA	NA	NA	NA
1351289	1206695722	PD9774b	3	157375238	G	A	C3orf55	ENST00000461040	r.?	-	-	intronic	37	0	0	64	7	10.9375	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	0.607221607	0.607221607	1	0.00625	0.99375	0	0	2	3.78E-08	1	1	1	NA	NA	NA	NA
1351289	1206695739	PD9774b	3	157595407	C	A	-	-	-	-	-	-	35	0	0	60	11	18.33333333	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	1.017819075	1.017819075	1	0	1	0	0	2	1.34E-14	1	1	1	NA	NA	NA	NA
1351289	1206696010	PD9774b	3	160883678	G	A	NMD3	ENST00000468606	r.?	-	-	intronic	28	0	0	69	10	14.49275362	0	0	NA	0	0	NA	2.803739453	1	1	0.196260547	2	1	0.803739453	unphased	1.051500341	1.051500341	1	0	1	0	0	2	2.54E-12	1	1	1	NA	NA	NA	NA
1351289	1206696299	PD9774b	3	163721591	C	A	-	-	-	-	-	-	18	0	0	18	6	33.33333333	0	0	NA	0	0	NA	2.803739453	1	1	0.196260547	2	1	0.803739453	unphased	2.418450785	1.340798296	1.803739453	0	0.99625	0.00375	0	2	2.75E-10	1	1	1	NA	NA	NA	NA
1351289	1206696302	PD9774b	3	163738194	G	A	-	-	-	-	-	-	29	0	0	47	14	29.78723404	0	0	NA	0	0	NA	2.803739453	1	1	0.196260547	2	1	0.803739453	unphased	2.161168787	1.19816018	1.803739453	0	1	0	0	2	1.79E-21	1	1	1	NA	NA	NA	NA
1351289	1206696310	PD9774b	3	163938144	G	A	-	-	-	-	-	-	38	0	0	71	5	7.042253521	0	0	NA	0	0	NA	2.803739453	1	1	0.196260547	2	1	0.803739453	unphased	0.510940307	0.635703903	0.803739453	0.00125	0.99875	0	0	2	3.09E-05	1	1	1	NA	NA	NA	NA
1351289	1206696437	PD9774b	3	165182941	T	A	-	-	-	-	-	-	30	0	0	62	13	20.96774194	0	0	NA	0	0	NA	2.803739453	1	1	0.196260547	2	1	0.803739453	unphased	1.521283558	1.521283558	1	0	0.98125	0.01875	0	2	8.08E-18	1	1	1	NA	NA	NA	NA
1351289	1206696442	PD9774b	3	165284588	C	A	-	-	-	-	-	-	47	0	0	65	20	30.76923077	0	0	NA	0	0	NA	2.803739453	1	1	0.196260547	2	1	0.803739453	unphased	2.23241611	1.237659966	1.803739453	0	1	0	0	2	2.18E-30	1	1	1	NA	NA	NA	NA
1351289	1206696445	PD9774b	3	165328407	G	A	-	-	-	-	-	-	39	0	0	56	9	16.07142857	0	0	NA	0	0	NA	2.803739453	1	1	0.196260547	2	1	0.803739453	unphased	1.166038771	1.166038771	1	0	0.9975	0.0025	0	2	1.20E-11	1	1	1	NA	NA	NA	NA
1351289	1206696475	PD9774b	3	165681641	C	A	-	-	-	-	-	-	46	0	0	65	7	10.76923077	0	0	NA	0	0	NA	2.803739453	1	1	0.196260547	2	1	0.803739453	unphased	0.781345638	0.972137968	0.803739453	0	0.99875	0.00125	0	2	4.22E-08	1	1	1	NA	NA	NA	NA
1351289	1206696687	PD9774b	3	168002618	G	A	-	-	-	-	-	-	27	0	0	81	28	34.56790123	0	0	NA	0	0	NA	3.558173709	2	1	0.441826291	3	1	0.558173709	unphased	2.768815125	1.082340545	2.558173709	0	1	0	0	2	1.28E-43	1	1	1	NA	NA	NA	NA
1351289	1206696698	PD9774b	3	168129250	C	A	-	-	-	-	-	-	45	0	0	65	8	12.30769231	0	0	NA	0	0	NA	3.558173709	2	1	0.441826291	3	1	0.558173709	unphased	0.985819891	0.985819891	1	0	0.99875	0.00125	0	2	1.53E-09	1	1	1	NA	NA	NA	NA
1351289	1206696703	PD9774b	3	168181034	C	A	-	-	-	-	-	-	48	0	0	72	9	12.5	0	0	NA	0	0	NA	3.558173709	2	1	0.441826291	3	1	0.558173709	unphased	1.001223326	1.001223326	1	0	1	0	0	2	1.25E-10	1	1	1	NA	NA	NA	NA
1351289	1206696839	PD9774b	3	169284519	C	A	MECOM	ENST00000494292	r.?	-	-	intronic	25	0	0	73	6	8.219178082	0	0	NA	0	0	NA	3.558173709	2	1	0.441826291	3	1	0.558173709	unphased	0.658338626	1.179451155	0.558173709	0.0025	0.99375	0.00375	0	2	2.00E-06	1	1	1	NA	NA	NA	NA
1351289	1206696858	PD9774b	3	169403133	G	A	-	-	-	-	-	-	12	0	0	11	3	27.27272727	0	0	NA	0	0	NA	3.558173709	2	1	0.441826291	3	1	0.558173709	unphased	2.184487258	2.184487258	1	0	0.99125	0.00875	0	2	2.00E-05	1	1	1	NA	NA	NA	NA
1351289	1206696884	PD9774b	3	169649273	C	A	SAMD7	CCDS3209.1	r.?	-	-	intronic	32	0	0	60	16	26.66666667	0	0	NA	0	0	NA	3.558173709	2	1	0.441826291	3	1	0.558173709	unphased	2.135943097	1.067971548	2	0	1	0	0	2	1.86E-23	1	1	1	NA	NA	NA	NA
1351289	1206696958	PD9774b	3	170429863	C	A	CLDN11	ENST00000486975	r.?	-	-	intronic	33	0	0	68	5	7.352941176	0	0	NA	0	0	NA	3.558173709	2	1	0.441826291	3	1	0.558173709	unphased	0.588954898	1.055146254	0.558173709	0	1	0	0	2	2.51E-05	1	1	1	NA	NA	NA	NA
1351289	1206697059	PD9774b	3	171269991	T	A	-	-	-	-	-	-	55	0	0	99	27	27.27272727	0	0	NA	0	0	NA	6.531613402	5	1	0.468386598	6	1	0.531613402	unphased	2.995425356	0.998475119	3	0	1	0	0	2	7.36E-39	1	1	1	NA	NA	NA	NA
1351289	1206697113	PD9774b	3	171630381	C	A	-	-	-	-	-	-	38	0	0	81	9	11.11111111	2	0	0	0	0	NA	6.531613402	5	1	0.468386598	6	1	0.531613402	unphased	1.220358478	1.220358478	1	0	0.995	0.005	0	2	3.68E-10	1	1	1	NA	NA	NA	NA
1351289	1206697126	PD9774b	3	171678307	G	A	-	-	-	-	-	-	23	0	0	103	8	7.766990291	0	0	NA	0	0	NA	6.531613402	5	1	0.468386598	6	1	0.531613402	unphased	0.853066121	0.853066121	1	0.0025	0.9975	0	0	2	6.09E-08	1	1	1	NA	NA	NA	NA
1351289	1206697240	PD9774b	3	172170092	G	A	GHSR	CCDS3218.1	r.?	-	-	upstream	33	0	0	101	6	5.940594059	0	0	NA	0	0	NA	6.531613402	5	1	0.468386598	6	1	0.531613402	unphased	0.652468889	1.227337173	0.531613402	0	1	0	0	2	1.32E-05	1	1	1	NA	NA	NA	NA
1351289	1206697372	PD9774b	3	172803216	G	A	SPATA16	CCDS3221.1	r.?	-	-	intronic	44	0	0	125	16	12.8	0	0	NA	0	0	NA	6.531613402	5	1	0.468386598	6	1	0.531613402	unphased	1.405852967	1.405852967	1	0	0.9925	0.0075	0	2	5.69E-18	1	1	1	NA	NA	NA	NA
1351289	1206697473	PD9774b	3	173536500	T	A	NLGN1	CCDS3222.1	r.?	-	-	intronic	42	0	0	99	23	23.23232323	0	0	NA	0	0	NA	6.531613402	5	1	0.468386598	6	1	0.531613402	unphased	2.551658636	1.007917968	2.531613402	0	1	0	0	2	1.58E-31	1	1	1	NA	NA	NA	NA
1351289	1206697556	PD9774b	3	174028748	T	A	-	-	-	-	-	-	34	0	0	91	11	12.08791209	0	0	NA	0	0	NA	6.531613402	5	1	0.468386598	6	1	0.531613402	unphased	1.32764274	1.32764274	1	0	0.995	0.005	0	2	1.60E-12	1	1	1	NA	NA	NA	NA
1351289	1206697776	PD9774b	3	175640285	T	A	-	-	-	-	-	-	41	0	0	79	17	21.51898734	0	0	NA	0	0	NA	3.857929349	3	0	0.142070651	3	1	0.857929349	unphased	1.788129345	0.894064673	2	0.00125	0.99875	0	0	2	4.55E-23	1	1	1	NA	NA	NA	NA
1351289	1206698060	PD9774b	3	178116695	C	A	KCNMB2	ENST00000437510	r.?	-	-	intronic	28	0	0	82	11	13.41463415	0	0	NA	0	0	NA	3.857929349	3	0	0.142070651	3	1	0.857929349	unphased	1.114694692	1.114694692	1	0.00125	0.99875	0	0	2	4.94E-13	1	1	1	NA	NA	NA	NA
1351289	1206698186	PD9774b	3	179645104	G	A	PEX5L	CCDS3236.1	r.?	-	-	intronic	26	0	0	69	23	33.33333333	0	0	NA	0	0	NA	3.857929349	3	0	0.142070651	3	1	0.857929349	unphased	2.769847417	0.923282472	3	0	1	0	0	2	1.15E-35	1	1	1	NA	NA	NA	NA
1351289	1206698303	PD9774b	3	181004893	G	A	-	-	-	-	-	-	38	0	0	76	8	10.52631579	0	0	NA	0	0	NA	3.857929349	3	0	0.142070651	3	1	0.857929349	unphased	0.874688658	1.019534603	0.857929349	0	1	0	0	2	5.44E-09	1	1	1	NA	NA	NA	NA
1351289	1206698337	PD9774b	3	181462242	G	A	-	-	-	-	-	-	39	0	0	64	6	9.375	0	0	NA	0	0	NA	3.857929349	3	0	0.142070651	3	1	0.857929349	unphased	0.779019586	0.908023006	0.857929349	0.0025	0.9975	0	0	2	9.14E-07	1	1	1	NA	NA	NA	NA
1351289	1206699243	PD9774b	3	189921995	T	A	-	-	-	-	-	-	38	0	0	45	6	13.33333333	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.593548387	0.593548387	1	0.0075	0.9925	0	0	2	1.08E-07	1	1	1	NA	NA	NA	NA
1351289	1206699278	PD9774b	3	190484786	G	A	-	-	-	-	-	-	25	0	0	46	7	15.2173913	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.677419355	0.677419355	1	0.00375	0.99625	0	0	2	3.53E-09	1	1	1	NA	NA	NA	NA
1351289	1206699392	PD9774b	3	192063822	T	A	FGF12	CCDS3301.1	r.?	-	-	intronic	30	1	3.333333333	50	6	12	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.534193548	0.534193548	1	0.00375	0.99625	0	0	2	2.06E-07	0.139615808	1	1	NA	NA	NA	NA
1351289	1206699555	PD9774b	3	194728204	G	A	-	-	-	-	-	-	33	0	0	64	6	9.375	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.41733871	0.41733871	1	0.045	0.955	0	0	2	9.14E-07	1	1	1	NA	NA	NA	NA
1351289	1206700222	PD9774b	3	196356762	C	A	-	-	-	-	-	-	39	0	0	53	4	7.547169811	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.335970785	0.335970785	1	0.03875	0.96125	0	0	2	0.000150502	1	1	1	NA	NA	NA	NA
1351289	1206700350	PD9774b	3	197184626	G	A	-	-	-	-	-	-	31	0	0	44	5	11.36363636	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.505865103	0.505865103	1	0.0075	0.9925	0	0	2	2.88E-06	1	1	1	NA	NA	NA	NA
1351289	1206700716	PD9774b	4	673017	G	A	MFSD7	CCDS3338.1	r.?	-	-	downstream	37	0	0	42	12	28.57142857	0	0	NA	0	0	NA	0.822303617	0	0	0.177696383	1	0	0.822303617	unphased	1.506833292	1.506833292	1	0	0.98375	0.01625	0	2	2.35E-18	1	1	1	NA	NA	NA	NA
1351289	1206701174	PD9774b	4	3899553	G	A	-	-	-	-	-	-	42	0	0	38	5	13.15789474	0	0	NA	0	0	NA	0.822303617	0	0	0.177696383	1	0	0.822303617	unphased	0.693936384	0.843893143	0.822303617	0	1	0	0	2	1.37E-06	1	1	1	NA	NA	NA	NA
1351289	1206701470	PD9774b	4	7278277	G	A	SORCS2	CCDS47008.1	r.?	-	-	intronic	32	0	0	57	7	12.28070175	0	0	NA	0	0	NA	0.822303617	0	0	0.177696383	1	0	0.822303617	unphased	0.647673959	0.7876336	0.822303617	0.005	0.995	0	0	2	1.66E-08	1	1	1	NA	NA	NA	NA
1351289	1206701471	PD9774b	4	7278278	C	A	SORCS2	CCDS47008.1	r.?	-	-	intronic	34	0	0	58	7	12.06896552	0	0	NA	0	0	NA	0.822303617	0	0	0.177696383	1	0	0.822303617	unphased	0.636507166	0.774053711	0.822303617	0.00375	0.99625	0	0	2	1.88E-08	1	1	1	NA	NA	NA	NA
1351289	1206701866	PD9774b	4	10694932	T	A	-	-	-	-	-	-	42	0	0	49	9	18.36734694	0	0	NA	0	0	NA	0.822303617	0	0	0.177696383	1	0	0.822303617	unphased	0.968678545	0.968678545	1	0.00125	0.99875	0	0	2	3.35E-12	1	1	1	NA	NA	NA	NA
1351289	1206702443	PD9774b	4	18668678	T	A	-	-	-	-	-	-	23	0	0	57	6	10.52631579	0	0	NA	0	0	NA	0.822303617	0	0	0.177696383	1	0	0.822303617	unphased	0.555149107	0.675114515	0.822303617	0.0025	0.9975	0	0	2	4.56E-07	1	1	1	NA	NA	NA	NA
1351289	1206702604	PD9774b	4	20676890	G	A	-	-	-	-	-	-	31	0	0	46	9	19.56521739	0	0	NA	0	0	NA	0.822303617	0	0	0.177696383	1	0	0.822303617	unphased	1.031853232	1.031853232	1	0	0.99875	0.00125	0	2	1.82E-12	1	1	1	NA	NA	NA	NA
1351289	1206702670	PD9774b	4	21403515	C	A	KCNIP4	CCDS43217.1	r.?	-	-	intronic	36	0	0	46	6	13.04347826	0	0	NA	0	0	NA	0.822303617	0	0	0.177696383	1	0	0.822303617	unphased	0.687902155	0.836554942	0.822303617	0.0025	0.9975	0	0	2	1.23E-07	1	1	1	NA	NA	NA	NA
1351289	1206702725	PD9774b	4	22140235	C	A	-	-	-	-	-	-	28	0	0	58	12	20.68965517	0	0	NA	0	0	NA	0.822303617	0	0	0.177696383	1	0	0.822303617	unphased	1.091155142	1.091155142	1	0	0.99875	0.00125	0	2	1.76E-16	1	1	1	NA	NA	NA	NA
1351289	1206702857	PD9774b	4	23925863	G	A	-	-	-	-	-	-	37	0	0	53	7	13.20754717	0	0	NA	0	0	NA	0.822303617	0	0	0.177696383	1	0	0.822303617	unphased	0.696555012	0.847077646	0.822303617	0.0025	0.9975	0	0	2	9.85E-09	1	1	1	NA	NA	NA	NA
1351289	1206702859	PD9774b	4	23944883	G	A	-	-	-	-	-	-	41	0	0	51	8	15.68627451	0	0	NA	0	0	NA	0.822303617	0	0	0.177696383	1	0	0.822303617	unphased	0.827281023	1.006053002	0.822303617	0.0025	0.9975	0	0	2	2.05E-10	1	1	1	NA	NA	NA	NA
1351289	1206702985	PD9774b	4	25506836	T	A	-	-	-	-	-	-	33	0	0	19	4	21.05263158	0	0	NA	0	0	NA	0.822303617	0	0	0.177696383	1	0	0.822303617	unphased	1.110298215	1.110298215	1	0.00125	0.9975	0.00125	0	2	2.28E-06	1	1	1	NA	NA	NA	NA
1351289	1206703390	PD9774b	4	30268395	C	A	ENSG00000237496	ENST00000424014	r.?	-	-	intronic	48	0	0	58	9	15.51724138	0	0	NA	0	0	NA	1.766479176	1	0	0.233520824	1	1	0.766479176	unphased	0.964876357	0.964876357	1	0	1	0	0	2	1.67E-11	1	1	1	NA	NA	NA	NA
1351289	1206703415	PD9774b	4	30650325	G	A	-	-	-	-	-	-	26	0	0	65	16	24.61538462	0	0	NA	0	0	NA	1.766479176	1	0	0.233520824	1	1	0.766479176	unphased	1.530607281	1.530607281	1	0	0.99	0.01	0	2	7.85E-23	1	1	1	NA	NA	NA	NA
1351289	1206703536	PD9774b	4	31900455	C	A	-	-	-	-	-	-	29	0	0	57	13	22.80701754	0	0	NA	0	0	NA	1.766479176	1	0	0.233520824	1	1	0.766479176	unphased	1.418161351	1.418161351	1	0	0.99375	0.00625	0	2	2.44E-18	1	1	1	NA	NA	NA	NA
1351289	1206703547	PD9774b	4	32095355	T	A	-	-	-	-	-	-	33	0	0	63	8	12.6984127	0	0	NA	0	0	NA	1.766479176	1	0	0.233520824	1	1	0.766479176	unphased	0.789598994	1.030163661	0.766479176	0	0.9975	0.0025	0	2	1.18E-09	1	1	1	NA	NA	NA	NA
1351289	1206703553	PD9774b	4	32192598	C	A	-	-	-	-	-	-	30	0	0	61	9	14.75409836	0	0	NA	0	0	NA	1.766479176	1	0	0.233520824	1	1	0.766479176	unphased	0.917423422	0.917423422	1	0.00125	0.99875	0	0	2	2.68E-11	1	1	1	NA	NA	NA	NA
1351289	1206703569	PD9774b	4	32428622	T	A	-	-	-	-	-	-	51	0	0	64	15	23.4375	0	0	NA	0	0	NA	1.766479176	1	0	0.233520824	1	1	0.766479176	unphased	1.457365331	1.457365331	1	0	0.98625	0.01375	0	2	3.87E-21	1	1	1	NA	NA	NA	NA
1351289	1206703598	PD9774b	4	32780192	G	A	-	-	-	-	-	-	23	0	0	61	14	22.95081967	0	0	NA	0	0	NA	1.766479176	1	0	0.233520824	1	1	0.766479176	unphased	1.4271031	1.4271031	1	0	0.99125	0.00875	0	2	1.10E-19	1	1	1	NA	NA	NA	NA
1351289	1206703659	PD9774b	4	33491776	T	A	-	-	-	-	-	-	30	0	0	73	6	8.219178082	0	0	NA	0	0	NA	1.766479176	1	0	0.233520824	1	1	0.766479176	unphased	0.511076061	0.666784013	0.766479176	0.005	0.995	0	0	2	2.00E-06	1	1	1	NA	NA	NA	NA
1351289	1206703865	PD9774b	4	35106878	C	A	-	-	-	-	-	-	42	0	0	61	7	11.47540984	0	0	NA	0	0	NA	1.766479176	1	0	0.233520824	1	1	0.766479176	unphased	0.71355155	0.930947079	0.766479176	0.00125	0.99875	0	0	2	2.69E-08	1	1	1	NA	NA	NA	NA
1351289	1206703992	PD9774b	4	36963472	T	A	-	-	-	-	-	-	35	0	0	60	7	11.66666667	0	0	NA	0	0	NA	1.766479176	1	0	0.233520824	1	1	0.766479176	unphased	0.725444076	0.946462864	0.766479176	0.00375	0.99625	0	0	2	2.39E-08	1	1	1	NA	NA	NA	NA
1351289	1206704127	PD9774b	4	38493859	C	A	-	-	-	-	-	-	32	0	0	65	9	13.84615385	0	0	NA	0	0	NA	1.766479176	1	0	0.233520824	1	1	0.766479176	unphased	0.860966596	1.123274607	0.766479176	0	0.9975	0.0025	0	2	4.85E-11	1	1	1	NA	NA	NA	NA
1351289	1206704134	PD9774b	4	38546013	T	A	-	-	-	-	-	-	27	0	0	46	8	17.39130435	0	0	NA	0	0	NA	1.766479176	1	0	0.233520824	1	1	0.766479176	unphased	1.081407318	1.081407318	1	0	0.99875	0.00125	0	2	8.61E-11	1	1	1	NA	NA	NA	NA
1351289	1206704407	PD9774b	4	40382064	T	A	RNU7-74P	ENST00000459104	r.?	-	-	upstream	39	0	0	45	11	24.44444444	0	0	NA	0	0	NA	1.766479176	1	0	0.233520824	1	1	0.766479176	unphased	1.519978064	1.519978064	1	0	0.98875	0.01125	0	2	4.24E-16	1	1	1	NA	NA	NA	NA
1351289	1206704408	PD9774b	4	40382065	C	A	RNU7-74P	ENST00000459104	r.?	-	-	upstream	38	0	0	46	11	23.91304348	0	0	NA	0	0	NA	1.766479176	1	0	0.233520824	1	1	0.766479176	unphased	1.486935062	1.486935062	1	0.00125	0.9925	0.00625	0	2	5.55E-16	1	1	1	NA	NA	NA	NA
1351289	1206704529	PD9774b	4	41639679	T	A	LIMCH1	CCDS33977.1	r.?	-	-	intronic	26	0	0	49	6	12.24489796	0	0	NA	0	0	NA	1.766479176	1	0	0.233520824	1	1	0.766479176	unphased	0.76139903	0.993372102	0.766479176	0.00125	0.9975	0.00125	0	2	1.82E-07	1	1	1	NA	NA	NA	NA
1351289	1206704680	PD9774b	4	43350007	G	A	-	-	-	-	-	-	36	0	0	51	8	15.68627451	0	0	NA	0	0	NA	1.766479176	1	0	0.233520824	1	1	0.766479176	unphased	0.975386993	0.975386993	1	0	0.99875	0.00125	0	2	2.05E-10	1	1	1	NA	NA	NA	NA
1351289	1206704895	PD9774b	4	45652527	G	A	-	-	-	-	-	-	38	0	0	61	10	16.39344262	0	0	NA	0	0	NA	1.766479176	1	0	0.233520824	1	1	0.766479176	unphased	1.019359357	1.019359357	1	0.00125	0.99875	0	0	2	6.98E-13	1	1	1	NA	NA	NA	NA
1351289	1206705024	PD9774b	4	47485817	C	A	ATP10D	CCDS3476.1	r.?	-	-	upstream	39	0	0	63	13	20.63492063	0	0	NA	0	0	NA	1.766479176	1	0	0.233520824	1	1	0.766479176	unphased	1.283098366	1.283098366	1	0	0.995	0.005	0	2	1.01E-17	1	1	1	NA	NA	NA	NA
1351289	1206705128	PD9774b	4	48627291	T	A	FRYL	CCDS43227.1	r.?	-	-	intronic	33	0	0	62	8	12.90322581	0	0	NA	0	0	NA	1.766479176	1	0	0.233520824	1	1	0.766479176	unphased	0.802334462	1.046779204	0.766479176	0	0.99625	0.00375	0	2	1.04E-09	1	1	1	NA	NA	NA	NA
1351289	1206711408	PD9774b	4	54438457	G	A	LNX1	CCDS47057.1	r.?	-	-	intronic	38	0	0	53	7	13.20754717	0	0	NA	0	0	NA	1.766479176	1	0	0.233520824	1	1	0.766479176	unphased	0.821257444	1.071467393	0.766479176	0.0025	0.9975	0	0	2	9.85E-09	1	1	1	NA	NA	NA	NA
1351289	1206711448	PD9774b	4	54712685	C	A	AC110792.1	ENST00000511394	r.?	-	-	intronic	25	0	0	59	12	20.33898305	0	0	NA	0	0	NA	1.766479176	1	0	0.233520824	1	1	0.766479176	unphased	1.264696694	1.264696694	1	0.00125	0.995	0.00375	0	2	2.20E-16	1	1	1	NA	NA	NA	NA
1351289	1206711632	PD9774b	4	56688850	T	A	-	-	-	-	-	-	33	0	0	60	7	11.66666667	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.752688172	0.752688172	1	0.00375	0.99625	0	0	2	2.39E-08	1	1	1	NA	NA	NA	NA
1351289	1206711729	PD9774b	4	57804836	G	A	REST	CCDS3509.1	r.?	-	-	downstream	27	0	0	43	6	13.95348837	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.900225056	0.900225056	1	0	1	0	0	2	8.13E-08	1	1	1	NA	NA	NA	NA
1351289	1206711788	PD9774b	4	58559480	C	A	-	-	-	-	-	-	25	0	0	38	7	18.42105263	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.188455008	1.188455008	1	0.00125	0.9975	0.00125	0	2	8.61E-10	1	1	1	NA	NA	NA	NA
1351289	1206711818	PD9774b	4	58855505	T	A	-	-	-	-	-	-	34	0	0	52	5	9.615384615	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.620347395	0.620347395	1	0.00125	0.9975	0.00125	0	2	6.68E-06	1	1	1	NA	NA	NA	NA
1351289	1206711944	PD9774b	4	60269447	G	A	-	-	-	-	-	-	36	0	0	53	8	15.09433962	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.973828363	0.973828363	1	0.0025	0.9975	0	0	2	2.83E-10	1	1	1	NA	NA	NA	NA
1351289	1206712043	PD9774b	4	61191244	G	A	-	-	-	-	-	-	43	0	0	54	8	14.81481481	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.955794504	0.955794504	1	0	1	0	0	2	3.31E-10	1	1	1	NA	NA	NA	NA
1351289	1206712121	PD9774b	4	62081836	T	A	LPHN3	ENST00000512091	r.?	-	-	intronic	30	0	0	52	8	15.38461538	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.992555831	0.992555831	1	0.00375	0.99625	0	0	2	2.42E-10	1	1	1	NA	NA	NA	NA
1351289	1206712177	PD9774b	4	62580512	C	A	LPHN3	ENST00000512091	r.?	-	-	intronic	27	0	0	51	9	17.64705882	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.138519924	1.138519924	1	0.0025	0.99625	0.00125	0	2	4.92E-12	1	1	1	NA	NA	NA	NA
1351289	1206712192	PD9774b	4	62741191	G	A	LPHN3	ENST00000512091	r.?	-	-	intronic	33	0	0	54	5	9.259259259	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.597371565	0.597371565	1	0.00125	0.99875	0	0	2	8.06E-06	1	1	1	NA	NA	NA	NA
1351289	1206712374	PD9774b	4	64870152	C	A	-	-	-	-	-	-	30	0	0	44	5	11.36363636	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.73313783	0.73313783	1	0.0025	0.9975	0	0	2	2.88E-06	1	1	1	NA	NA	NA	NA
1351289	1206712465	PD9774b	4	65611518	C	A	-	-	-	-	-	-	32	0	0	57	8	14.03508772	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.90548953	0.90548953	1	0.0025	0.9975	0	0	2	5.19E-10	1	1	1	NA	NA	NA	NA
1351289	1206712511	PD9774b	4	66212510	C	A	EPHA5	CCDS3513.1	r.?	-	-	intronic	43	0	0	66	7	10.60606061	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.684261975	0.684261975	1	0.0075	0.9925	0	0	2	4.70E-08	1	1	1	NA	NA	NA	NA
1351289	1206712588	PD9774b	4	67238531	G	A	-	-	-	-	-	-	30	0	0	38	8	21.05263158	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.358234295	1.358234295	1	0	0.995	0.005	0	2	1.67E-11	1	1	1	NA	NA	NA	NA
1351289	1206712791	PD9774b	4	69396504	T	A	-	-	-	-	-	-	41	0	0	66	10	15.15151515	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.977517107	0.977517107	1	0.00125	0.99875	0	0	2	1.60E-12	1	1	1	NA	NA	NA	NA
1351289	1206713084	PD9774b	4	72220339	C	A	SLC4A4	CCDS3549.1	r.?	-	-	intronic	32	0	0	52	9	17.30769231	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.11662531	1.11662531	1	0	1	0	0	2	5.92E-12	1	1	1	NA	NA	NA	NA
1351289	1206713159	PD9774b	4	73161781	C	A	ADAMTS3	CCDS3553.1	r.?	-	-	intronic	44	0	0	68	13	19.11764706	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.233396584	1.233396584	1	0	0.99875	0.00125	0	2	2.96E-17	1	1	1	NA	NA	NA	NA
1351289	1206713207	PD9774b	4	73630209	C	A	-	-	-	-	-	-	29	0	0	62	4	6.451612903	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.416233091	0.416233091	1	0.02625	0.97375	0	0	2	0.000276647	1	1	1	NA	NA	NA	NA
1351289	1206713363	PD9774b	4	75787848	C	A	-	-	-	-	-	-	31	0	0	48	8	16.66666667	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.075268817	1.075268817	1	0.00125	0.9975	0.00125	0	2	1.23E-10	1	1	1	NA	NA	NA	NA
1351289	1206713506	PD9774b	4	77162956	C	A	FAM47E	ENST00000510197	r.?	-	-	intronic	36	0	0	63	4	6.349206349	2	0	0	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.409626216	0.409626216	1	0.01625	0.98375	0	0	2	0.000294233	1	1	1	NA	NA	NA	NA
1351289	1206713674	PD9774b	4	79421992	G	A	FRAS1	ENST00000264895	r.?	-	-	intronic	28	0	0	49	11	22.44897959	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.448321264	1.448321264	1	0	0.99375	0.00625	0	2	1.19E-15	1	1	1	NA	NA	NA	NA
1351289	1206713819	PD9774b	4	81849345	C	A	C4orf22	CCDS3587.1	r.?	-	-	intronic	36	0	0	54	4	7.407407407	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.477897252	0.477897252	1	0.00625	0.99375	0	0	2	0.000161898	1	1	1	NA	NA	NA	NA
1351289	1206713878	PD9774b	4	82631638	G	A	-	-	-	-	-	-	37	0	0	63	10	15.87301587	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.839211203	1.004540878	0.835417673	0	0.99625	0.00375	0	2	9.81E-13	1	1	1	NA	NA	NA	NA
1351289	1206713914	PD9774b	4	83008533	T	A	-	-	-	-	-	-	34	0	0	41	8	19.51219512	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	1.031615722	1.031615722	1	0	1	0	0	2	3.22E-11	1	1	1	NA	NA	NA	NA
1351289	1206714080	PD9774b	4	85234513	T	A	-	-	-	-	-	-	25	0	0	51	4	7.843137255	0	0	NA	1	0	0	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.414669065	0.496361375	0.835417673	0.00625	0.99375	0	0	2	0.000129466	1	1	1	NA	NA	NA	NA
1351289	1206714166	PD9774b	4	86355393	G	A	-	-	-	-	-	-	34	0	0	52	7	13.46153846	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.711715654	0.851927937	0.835417673	0.00375	0.99625	0	0	2	8.58E-09	1	1	1	NA	NA	NA	NA
1351289	1206714206	PD9774b	4	86859378	G	A	ARHGAP24	CCDS34025.1	r.?	-	-	intronic	31	0	0	43	7	16.27906977	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.860679396	1.030238435	0.835417673	0	1	0	0	2	2.15E-09	1	1	1	NA	NA	NA	NA
1351289	1206714243	PD9774b	4	87535232	G	A	PTPN13	CCDS47093.1	r.?	-	-	intronic	46	0	0	50	8	16	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.845924892	1.012577205	0.835417673	0.00125	0.99875	0	0	2	1.74E-10	1	1	1	NA	NA	NA	NA
1351289	1206714616	PD9774b	4	91922387	C	A	FAM190A	CCDS47099.1	r.?	-	-	intronic	36	0	0	44	10	22.72727273	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	1.201597858	1.201597858	1	0	0.99625	0.00375	0	2	2.08E-14	1	1	1	NA	NA	NA	NA
1351289	1206714670	PD9774b	4	92498952	C	A	FAM190A	CCDS47099.1	r.?	-	-	intronic	33	0	0	57	5	8.771929825	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.463774612	0.555141011	0.835417673	0.01	0.99	0	0	2	1.05E-05	1	1	1	NA	NA	NA	NA
1351289	1206714694	PD9774b	4	93169642	G	A	-	-	-	-	-	-	42	0	0	49	9	18.36734694	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.971087249	0.971087249	1	0.00125	0.99875	0	0	2	3.35E-12	1	1	1	NA	NA	NA	NA
1351289	1206714735	PD9774b	4	93802745	T	A	GRID2	CCDS3637.1	r.?	-	-	intronic	33	0	0	41	8	19.51219512	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	1.031615722	1.031615722	1	0	0.99875	0.00125	0	2	3.22E-11	1	1	1	NA	NA	NA	NA
1351289	1206714782	PD9774b	4	94720379	T	A	-	-	-	-	-	-	33	0	0	30	9	30	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	1.586109173	1.586109173	1	0	0.995	0.005	0	2	2.54E-14	1	1	1	NA	NA	NA	NA
1351289	1206715031	PD9774b	4	98755456	C	A	C4orf37	CCDS3645.1	r.?	-	-	intronic	30	0	0	45	9	20	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	1.057406115	1.057406115	1	0	1	0	0	2	1.47E-12	1	1	1	NA	NA	NA	NA
1351289	1206715508	PD9774b	4	104271663	G	A	-	-	-	-	-	-	32	0	0	38	5	13.15789474	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.695661918	0.832711517	0.835417673	0.00125	0.99875	0	0	2	1.37E-06	1	1	1	NA	NA	NA	NA
1351289	1206716273	PD9774b	4	115888797	G	A	NDST4	CCDS3706.1	r.?	-	-	intronic	37	0	0	59	11	18.6440678	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.985717565	0.985717565	1	0	1	0	0	2	1.10E-14	1	1	1	NA	NA	NA	NA
1351289	1206716277	PD9774b	4	115948112	T	A	NDST4	CCDS3706.1	r.?	-	-	intronic	23	0	0	44	5	11.36363636	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.600798929	0.719159947	0.835417673	0.0025	0.99625	0.00125	0	2	2.88E-06	1	1	1	NA	NA	NA	NA
1351289	1206716397	PD9774b	4	117537892	T	A	-	-	-	-	-	-	43	0	0	30	7	23.33333333	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	1.233640468	1.233640468	1	0	1	0	0	2	1.44E-10	1	1	1	NA	NA	NA	NA
1351289	1206716429	PD9774b	4	118250852	G	A	-	-	-	-	-	-	37	0	0	51	10	19.60784314	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	1.036672662	1.036672662	1	0.00125	0.99875	0	0	2	1.04E-13	1	1	1	NA	NA	NA	NA
1351289	1206716536	PD9774b	4	119503711	C	A	-	-	-	-	-	-	43	0	0	56	12	21.42857143	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	1.132935123	1.132935123	1	0	1	0	0	2	1.11E-16	1	1	1	NA	NA	NA	NA
1351289	1206716723	PD9774b	4	122253988	G	A	QRFPR	CCDS3719.1	r.1197c>u	c.785C>T	p.S262F	missense	22	0	0	41	5	12.19512195	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.644759826	0.771781406	0.835417673	0.00375	0.99625	0	0	2	2.02E-06	1	1	1	NA	NA	NA	NA
1351289	1206716738	PD9774b	4	122431985	C	A	-	-	-	-	-	-	37	0	0	40	5	12.5	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.660878822	0.791075941	0.835417673	0	0.99875	0.00125	0	2	1.78E-06	1	1	1	NA	NA	NA	NA
1351289	1206716883	PD9774b	4	124467406	T	A	-	-	-	-	-	-	45	0	0	46	6	13.04347826	242	0	0	193	15	7.772020725	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.689612684	0.825470547	0.835417673	0	1	0	0	2	1.23E-07	1	1.11E-13	1	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206717742	PD9774b	4	133547980	C	A	-	-	-	-	-	-	32	0	0	46	5	10.86956522	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.574677237	0.687892123	0.835417673	0.00125	0.9975	0.00125	0	2	3.61E-06	1	1	1	NA	NA	NA	NA
1351289	1206717844	PD9774b	4	134984490	C	A	-	-	-	-	-	-	36	0	0	42	7	16.66666667	174	0	0	227	32	14.0969163	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.881171763	1.054767922	0.835417673	0.0025	0.99625	0.00125	0	2	1.81E-09	1	8.55E-36	1	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206717967	PD9774b	4	136727154	C	A	-	-	-	-	-	-	38	0	0	40	4	10	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.528703058	0.632860753	0.835417673	0.0025	0.9975	0	0	2	4.95E-05	1	1	1	NA	NA	NA	NA
1351289	1206717991	PD9774b	4	137004135	T	A	-	-	-	-	-	-	27	0	0	39	4	10.25641026	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.542259546	0.649087952	0.835417673	0.0025	0.9975	0	0	2	4.47E-05	1	1	1	NA	NA	NA	NA
1351289	1206718103	PD9774b	4	138549289	G	A	-	-	-	-	-	-	35	0	0	53	10	18.86792453	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.997552939	0.997552939	1	0.00125	0.99875	0	0	2	1.57E-13	1	1	1	NA	NA	NA	NA
1351289	1206718174	PD9774b	4	139780546	C	A	-	-	-	-	-	-	28	0	0	56	10	17.85714286	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.944112603	0.944112603	1	0.00125	0.99875	0	0	2	2.82E-13	1	1	1	NA	NA	NA	NA
1351289	1206718268	PD9774b	4	140856653	C	A	MAML3	CCDS43266.1	r.?	-	-	intronic	26	0	0	37	5	13.51351351	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.714463591	0.855217234	0.835417673	0.00125	0.99875	0	0	2	1.19E-06	1	1	1	NA	NA	NA	NA
1351289	1206718574	PD9774b	4	144843015	C	A	-	-	-	-	-	-	46	0	0	49	7	14.28571429	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.755290082	0.90408679	0.835417673	0	1	0	0	2	5.58E-09	1	1	1	NA	NA	NA	NA
1351289	1206718703	PD9774b	4	146259731	G	A	-	-	-	-	-	-	34	0	0	49	11	22.44897959	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	1.186884415	1.186884415	1	0	1	0	0	2	1.19E-15	1	1	1	NA	NA	NA	NA
1351289	1206718802	PD9774b	4	147721356	C	A	TTC29	CCDS47141.1	r.?	-	-	intronic	28	0	0	55	8	14.54545455	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.769022629	0.920524732	0.835417673	0	0.99875	0.00125	0	2	3.86E-10	1	1	1	NA	NA	NA	NA
1351289	1206719023	PD9774b	4	150970327	C	A	-	-	-	-	-	-	36	0	0	63	4	6.349206349	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.335684481	0.401816351	0.835417673	0.01	0.99	0	0	2	0.000294233	1	1	1	NA	NA	NA	NA
1351289	1206719036	PD9774b	4	151105963	C	A	DCLK2	CCDS34076.1	r.?	-	-	intronic	26	0	0	36	7	19.44444444	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	1.028033723	1.028033723	1	0.0025	0.9975	0	0	2	5.74E-10	1	1	1	NA	NA	NA	NA
1351289	1206719667	PD9774b	4	160223876	C	A	RAPGEF2	CCDS43277.1	r.?	-	-	intronic	48	0	0	60	6	10	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.528703058	0.632860753	0.835417673	0.00625	0.99375	0	0	2	6.21E-07	1	1	1	NA	NA	NA	NA
1351289	1206719758	PD9774b	4	161151776	G	A	-	-	-	-	-	-	34	0	0	58	7	12.06896552	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.638089897	0.763797461	0.835417673	0.00125	0.99875	0	0	2	1.88E-08	1	1	1	NA	NA	NA	NA
1351289	1206719834	PD9774b	4	162127549	C	A	-	-	-	-	-	-	32	0	0	54	11	20.37037037	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	1.07698771	1.07698771	1	0	1	0	0	2	3.84E-15	1	1	1	NA	NA	NA	NA
1351289	1206720372	PD9774b	4	168676818	C	A	-	-	-	-	-	-	41	0	0	43	8	18.60465116	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.983633596	0.983633596	1	0.00125	0.9975	0.00125	0	2	4.85E-11	1	1	1	NA	NA	NA	NA
1351289	1206720396	PD9774b	4	169074451	T	A	ANXA10	CCDS34096.1	r.?	-	-	intronic	23	0	0	42	7	16.66666667	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.881171763	1.054767922	0.835417673	0.00125	0.99875	0	0	2	1.81E-09	1	1	1	NA	NA	NA	NA
1351289	1206720538	PD9774b	4	170998945	T	A	AADAT	CCDS3814.1	r.?	-	-	intronic	44	0	0	47	9	19.14893617	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	1.01241011	1.01241011	1	0	1	0	0	2	2.24E-12	1	1	1	NA	NA	NA	NA
1351289	1206720584	PD9774b	4	172083674	G	A	-	-	-	-	-	-	44	0	0	41	8	19.51219512	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	1.031615722	1.031615722	1	0	1	0	0	2	3.22E-11	1	1	1	NA	NA	NA	NA
1351289	1206720690	PD9774b	4	173828288	C	A	GALNTL6	CCDS34104.1	r.?	-	-	intronic	35	0	0	53	5	9.433962264	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.498776469	0.597038446	0.835417673	0.00375	0.99625	0	0	2	7.34E-06	1	1	1	NA	NA	NA	NA
1351289	1206720914	PD9774b	4	176958429	C	A	-	-	-	-	-	-	41	0	0	46	6	13.04347826	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.689612684	0.825470547	0.835417673	0.00125	0.99875	0	0	2	1.23E-07	1	1	1	NA	NA	NA	NA
1351289	1206721140	PD9774b	4	179552867	C	A	-	-	-	-	-	-	33	0	0	36	8	22.22222222	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	1.174895684	1.174895684	1	0	0.99875	0.00125	0	2	1.04E-11	1	1	1	NA	NA	NA	NA
1351289	1206721414	PD9774b	4	182482147	C	A	-	-	-	-	-	-	38	0	0	42	8	19.04761905	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	1.007053443	1.007053443	1	0	1	0	0	2	3.96E-11	1	1	1	NA	NA	NA	NA
1351289	1206721488	PD9774b	4	183184315	G	A	ODZ3	ENST00000511685	r.?	-	-	intronic	32	0	0	41	6	14.63414634	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.773711792	0.926137687	0.835417673	0.00125	0.9975	0.00125	0	2	6.05E-08	1	1	1	NA	NA	NA	NA
1351289	1206721765	PD9774b	4	186073254	C	A	SLC25A4	CCDS34114.1	r.?	-	-	downstream	41	0	0	46	10	21.73913043	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	1.149354473	1.149354473	1	0	0.99875	0.00125	0	2	3.38E-14	1	1	1	NA	NA	NA	NA
1351289	1206721921	PD9774b	4	187320826	T	A	-	-	-	-	-	-	31	0	0	46	5	10.86956522	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.574677237	0.687892123	0.835417673	0.0025	0.99625	0.00125	0	2	3.61E-06	1	1	1	NA	NA	NA	NA
1351289	1206723076	PD9774b	4	190704351	T	A	-	-	-	-	-	-	53	0	0	60	7	11.66666667	0	0	NA	0	0	NA	1.841368976	1	0	0.158631024	1	1	0.841368976	unphased	0.734181219	0.872603151	0.841368976	0.00125	0.99875	0	0	2	2.39E-08	1	1	1	NA	NA	NA	NA
1351289	1206725651	PD9774b	5	1286264	T	A	TERT	CCDS3861.2	r.?	-	-	intronic	27	0	0	41	4	9.756097561	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	0.597509419	0.888016272	0.672858638	0.005	0.99375	0.00125	0	2	5.46E-05	1	1	1	NA	NA	NA	NA
1351289	1206725923	PD9774b	5	2330689	G	A	-	-	-	-	-	-	32	0	0	48	9	18.75	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	1.148338414	1.148338414	1	0	0.99875	0.00125	0	2	2.75E-12	1	1	1	NA	NA	NA	NA
1351289	1206726011	PD9774b	5	3191561	G	A	-	-	-	-	-	-	33	0	0	49	7	14.28571429	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	0.874924506	0.874924506	1	0.00125	0.99875	0	0	2	5.58E-09	1	1	1	NA	NA	NA	NA
1351289	1206726216	PD9774b	5	4891951	C	A	ENSG00000224867	ENST00000416839	r.?	-	-	intronic	25	0	0	66	5	7.575757576	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	0.463975117	0.68955809	0.672858638	0.005	0.995	0	0	2	2.17E-05	1	1	1	NA	NA	NA	NA
1351289	1206726252	PD9774b	5	5226571	T	A	ADAMTS16	CCDS43299.1	r.?	-	-	intronic	36	0	0	34	5	14.70588235	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	0.90065758	0.90065758	1	0	0.99875	0.00125	0	2	7.71E-07	1	1	1	NA	NA	NA	NA
1351289	1206726267	PD9774b	5	5517617	G	A	-	-	-	-	-	-	28	0	0	40	6	15	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	0.918670731	0.918670731	1	0.00125	0.99625	0.0025	0	2	5.18E-08	1	1	1	NA	NA	NA	NA
1351289	1206726275	PD9774b	5	5695288	C	A	-	-	-	-	-	-	37	0	0	60	12	20	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	1.224894308	1.224894308	1	0	0.995	0.005	0	2	2.74E-16	1	1	1	NA	NA	NA	NA
1351289	1206726491	PD9774b	5	8090801	T	A	-	-	-	-	-	-	33	0	0	60	8	13.33333333	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	0.816596205	0.816596205	1	0.00125	0.9975	0.00125	0	2	7.93E-10	1	1	1	NA	NA	NA	NA
1351289	1206726613	PD9774b	5	9398001	T	A	SEMA5A	CCDS3875.1	r.?	-	-	intronic	37	0	0	63	10	15.87301587	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	0.97213834	0.97213834	1	0	1	0	0	2	9.81E-13	1	1	1	NA	NA	NA	NA
1351289	1206726637	PD9774b	5	9831649	G	A	-	-	-	-	-	-	35	0	0	70	7	10	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	0.612447154	0.910216678	0.672858638	0.00125	0.9975	0.00125	0	2	7.11E-08	1	1	1	NA	NA	NA	NA
1351289	1206726710	PD9774b	5	10469692	G	A	ROPN1L	CCDS3879.1	r.?	-	-	downstream	31	0	0	64	8	12.5	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	0.765558943	1.137770848	0.672858638	0	0.99875	0.00125	0	2	1.35E-09	1	1	1	NA	NA	NA	NA
1351289	1206726927	PD9774b	5	13503722	C	A	-	-	-	-	-	-	26	0	0	52	7	13.46153846	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	0.824448092	0.824448092	1	0.00375	0.99625	0	0	2	8.58E-09	1	1	1	NA	NA	NA	NA
1351289	1206726950	PD9774b	5	13769625	G	A	DNAH5	CCDS3882.1	r.9810c>u	c.9705C>T	p.N3235N	silent	31	0	0	48	6	12.5	253	1	0.395256917	215	19	8.837209302	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	0.765558943	1.137770848	0.672858638	0.00125	0.995	0.00375	0	2	1.60E-07	1	5.64E-18	0.718654853	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206726980	PD9774b	5	14181041	T	A	TRIO	CCDS3883.1	r.?	-	-	intronic	36	0	0	73	15	20.54794521	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	1.258453056	1.258453056	1	0	0.995	0.005	0	2	3.38E-20	1	1	1	NA	NA	NA	NA
1351289	1206727036	PD9774b	5	14926775	C	A	-	-	-	-	-	-	36	0	0	63	5	7.936507937	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	0.48606917	0.722394189	0.672858638	0.0025	0.9975	0	0	2	1.73E-05	1	1	1	NA	NA	NA	NA
1351289	1206727290	PD9774b	5	17472116	C	A	-	-	-	-	-	-	39	0	0	49	7	14.28571429	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	0.874924506	0.874924506	1	0.0025	0.9975	0	0	2	5.58E-09	1	1	1	NA	NA	NA	NA
1351289	1206727360	PD9774b	5	17741347	C	A	-	-	-	-	-	-	44	0	0	74	14	18.91891892	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	1.158683805	1.158683805	1	0	0.9975	0.0025	0	2	2.10E-18	1	1	1	NA	NA	NA	NA
1351289	1206727425	PD9774b	5	18217406	C	A	-	-	-	-	-	-	35	0	0	56	4	7.142857143	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	0.437462253	0.65015477	0.672858638	0.00375	0.99625	0	0	2	0.000186538	1	1	1	NA	NA	NA	NA
1351289	1206727508	PD9774b	5	18877494	T	A	-	-	-	-	-	-	32	0	0	47	10	21.27659574	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	1.303079051	1.303079051	1	0	0.9975	0.0025	0	2	4.27E-14	1	1	1	NA	NA	NA	NA
1351289	1206727511	PD9774b	5	18919562	C	A	-	-	-	-	-	-	49	0	0	68	11	16.17647059	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	0.990723337	0.990723337	1	0	1	0	0	2	5.76E-14	1	1	1	NA	NA	NA	NA
1351289	1206727704	PD9774b	5	20827361	C	A	-	-	-	-	-	-	43	0	0	50	6	12	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	0.734936585	1.092260014	0.672858638	0.00125	0.995	0.00375	0	2	2.06E-07	1	1	1	NA	NA	NA	NA
1351289	1206728090	PD9774b	5	24026638	G	A	-	-	-	-	-	-	26	0	0	54	5	9.259259259	2	0	0	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	0.567080698	0.842793221	0.672858638	0.00125	0.9975	0.00125	0	2	8.06E-06	1	1	1	NA	NA	NA	NA
1351289	1206728140	PD9774b	5	24594158	C	A	CDH10	CCDS3892.1	r.?	-	-	intronic	43	0	0	82	16	19.51219512	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	1.195018837	1.195018837	1	0	0.99375	0.00625	0	2	4.67E-21	1	1	1	NA	NA	NA	NA
1351289	1206728177	PD9774b	5	24935307	G	A	-	-	-	-	-	-	32	0	0	58	12	20.68965517	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	1.267132043	1.267132043	1	0	0.9975	0.0025	0	2	1.76E-16	1	1	1	NA	NA	NA	NA
1351289	1206728178	PD9774b	5	24942680	G	A	-	-	-	-	-	-	53	0	0	69	11	15.94202899	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	0.976365028	0.976365028	1	0.00125	0.99875	0	0	2	6.82E-14	1	1	1	NA	NA	NA	NA
1351289	1206728247	PD9774b	5	25636575	G	A	-	-	-	-	-	-	35	0	0	57	16	28.07017544	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	1.719149906	1.719149906	1	0	0.94125	0.0575	0.00125	2	7.28E-24	1	1	1	NA	NA	NA	NA
1351289	1206728319	PD9774b	5	26479368	G	A	-	-	-	-	-	-	23	0	0	38	9	23.68421053	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	1.450532733	1.450532733	1	0	0.995	0.005	0	2	2.79E-13	1	1	1	NA	NA	NA	NA
1351289	1206728322	PD9774b	5	26593283	T	A	-	-	-	-	-	-	43	0	0	62	15	24.19354839	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	1.481726986	1.481726986	1	0	0.99125	0.00875	0	2	2.28E-21	1	1	1	NA	NA	NA	NA
1351289	1206728391	PD9774b	5	27312475	G	A	-	-	-	-	-	-	46	0	0	47	5	10.63829787	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	0.651539526	0.968315615	0.672858638	0	1	0	0	2	4.02E-06	1	1	1	NA	NA	NA	NA
1351289	1206728399	PD9774b	5	27364435	G	A	-	-	-	-	-	-	34	0	0	60	9	15	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	0.918670731	0.918670731	1	0.00125	0.99875	0	0	2	2.29E-11	1	1	1	NA	NA	NA	NA
1351289	1206728481	PD9774b	5	28280146	G	A	-	-	-	-	-	-	41	0	0	64	7	10.9375	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	0.669864075	0.995549492	0.672858638	0	0.9975	0.0025	0	2	3.78E-08	1	1	1	NA	NA	NA	NA
1351289	1206728565	PD9774b	5	28983611	G	A	-	-	-	-	-	-	32	0	0	48	5	10.41666667	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	0.637965785	0.948142373	0.672858638	0.00125	0.99625	0.0025	0	2	4.47E-06	1	1	1	NA	NA	NA	NA
1351289	1206728617	PD9774b	5	29390628	T	A	-	-	-	-	-	-	29	0	0	56	14	25	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	1.531117885	1.531117885	1	0	0.985	0.015	0	2	2.91E-20	1	1	1	NA	NA	NA	NA
1351289	1206729017	PD9774b	5	32958741	G	A	-	-	-	-	-	-	31	0	0	43	6	13.95348837	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	0.854577424	0.854577424	1	0.0025	0.9975	0	0	2	8.13E-08	1	1	1	NA	NA	NA	NA
1351289	1206729032	PD9774b	5	33166173	C	A	-	-	-	-	-	-	24	0	0	51	13	25.49019608	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	1.561139805	1.561139805	1	0	0.98625	0.01375	0	2	4.87E-19	1	1	1	NA	NA	NA	NA
1351289	1206729529	PD9774b	5	38238561	G	A	-	-	-	-	-	-	33	0	0	50	9	18	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	1.102404877	1.102404877	1	0	1	0	0	2	4.07E-12	1	1	1	NA	NA	NA	NA
1351289	1206729619	PD9774b	5	39297520	T	A	C9	CCDS3929.1	r.?	-	-	intronic	25	0	0	55	17	30.90909091	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	1.893018476	1.893018476	1	0	0.85875	0.14125	0	2	4.35E-26	1	1	1	NA	NA	NA	NA
1351289	1206729702	PD9774b	5	40091416	T	A	-	-	-	-	-	-	47	0	0	67	5	7.462686567	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	0.457050115	0.679266178	0.672858638	0.00625	0.99375	0	0	2	2.33E-05	1	1	1	NA	NA	NA	NA
1351289	1206729724	PD9774b	5	40254746	G	A	-	-	-	-	-	-	31	0	0	56	9	16.07142857	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	0.984290069	0.984290069	1	0	1	0	0	2	1.20E-11	1	1	1	NA	NA	NA	NA
1351289	1206729728	PD9774b	5	40302338	T	A	-	-	-	-	-	-	28	0	0	58	8	13.79310345	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	0.844754695	0.844754695	1	0.00375	0.99375	0.0025	0	2	5.99E-10	1	1	1	NA	NA	NA	NA
1351289	1206729733	PD9774b	5	40369676	C	A	-	-	-	-	-	-	29	0	0	60	8	13.33333333	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	0.816596205	0.816596205	1	0.00375	0.99625	0	0	2	7.93E-10	1	1	1	NA	NA	NA	NA
1351289	1206729931	PD9774b	5	43219691	G	A	ENSG00000177453	CCDS3943.1	r.?	-	-	intronic	37	0	0	55	8	14.54545455	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	0.890832224	0.890832224	1	0	1	0	0	2	3.86E-10	1	1	1	NA	NA	NA	NA
1351289	1206730010	PD9774b	5	44210472	G	A	-	-	-	-	-	-	52	0	0	50	13	26	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	1.592362601	1.592362601	1	0	0.98875	0.01125	0	2	3.65E-19	1	1	1	NA	NA	NA	NA
1351289	1206730028	PD9774b	5	44465488	T	A	-	-	-	-	-	-	45	0	0	60	7	11.66666667	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	0.71452168	1.061919458	0.672858638	0.0025	0.99625	0.00125	0	2	2.39E-08	1	1	1	NA	NA	NA	NA
1351289	1206730201	PD9774b	5	46116611	T	A	-	-	-	-	-	-	26	0	0	55	10	18.18181818	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	1.11354028	1.11354028	1	0.00125	0.9975	0.00125	0	2	2.33E-13	1	1	1	NA	NA	NA	NA
1351289	1206731354	PD9774b	5	50028751	C	A	PARP8	CCDS3954.1	r.?	-	-	intronic	33	0	0	59	8	13.55932203	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	0.830436819	0.830436819	1	0	0.9975	0.0025	0	2	6.90E-10	1	1	1	NA	NA	NA	NA
1351289	1206731400	PD9774b	5	50784740	T	A	-	-	-	-	-	-	38	0	0	59	4	6.779661017	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	0.41521841	0.617096053	0.672858638	0.005	0.995	0	0	2	0.00022841	1	1	1	NA	NA	NA	NA
1351289	1206731617	PD9774b	5	53430215	C	A	-	-	-	-	-	-	27	0	0	51	9	17.64705882	0	0	NA	0	0	NA	1.74120865	1	0	0.25879135	1	1	0.74120865	unphased	1.092850862	1.092850862	1	0	0.99875	0.00125	0	2	4.92E-12	1	1	1	NA	NA	NA	NA
1351289	1206731644	PD9774b	5	53771726	G	A	-	-	-	-	-	-	33	0	0	51	5	9.803921569	0	0	NA	0	0	NA	1.74120865	1	0	0.25879135	1	1	0.74120865	unphased	0.607139368	0.819120726	0.74120865	0.0025	0.9975	0	0	2	6.06E-06	1	1	1	NA	NA	NA	NA
1351289	1206731645	PD9774b	5	53771734	G	A	-	-	-	-	-	-	31	0	0	50	5	10	0	0	NA	0	0	NA	1.74120865	1	0	0.25879135	1	1	0.74120865	unphased	0.619282155	0.835503141	0.74120865	0.00125	0.99875	0	0	2	5.49E-06	1	1	1	NA	NA	NA	NA
1351289	1206731929	PD9774b	5	56656841	G	A	-	-	-	-	-	-	32	0	0	46	7	15.2173913	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.80543237	0.957447922	0.841228386	0	0.9975	0.0025	0	2	3.53E-09	1	1	1	NA	NA	NA	NA
1351289	1206732050	PD9774b	5	58076755	G	A	RAB3C	CCDS3976.1	r.?	-	-	intronic	29	0	0	64	5	7.8125	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.413503226	0.491546924	0.841228386	0.00875	0.99125	0	0	2	1.86E-05	1	1	1	NA	NA	NA	NA
1351289	1206732155	PD9774b	5	59442256	G	A	PDE4D	CCDS47032.1	r.?	-	-	intronic	28	0	0	40	5	12.5	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.661605161	0.786475079	0.841228386	0.00125	0.99875	0	0	2	1.78E-06	1	1	1	NA	NA	NA	NA
1351289	1206732364	PD9774b	5	62218226	T	A	-	-	-	-	-	-	38	0	0	52	4	7.692307692	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.407141638	0.483984664	0.841228386	0.005	0.995	0	0	2	0.000139698	1	1	1	NA	NA	NA	NA
1351289	1206732428	PD9774b	5	63071014	G	A	-	-	-	-	-	-	26	0	0	43	6	13.95348837	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.738535994	0.877925669	0.841228386	0.00125	0.99625	0.0025	0	2	8.13E-08	1	1	1	NA	NA	NA	NA
1351289	1206732706	PD9774b	5	67644453	G	A	-	-	-	-	-	-	33	0	0	43	9	20.93023256	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	1.107803991	1.107803991	1	0	0.99875	0.00125	0	2	9.45E-13	1	1	1	NA	NA	NA	NA
1351289	1206733127	PD9774b	5	74953887	T	A	-	-	-	-	-	-	33	0	0	32	4	12.5	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.661605161	0.786475079	0.841228386	0.00125	0.9975	0.00125	0	2	2.01E-05	1	1	1	NA	NA	NA	NA
1351289	1206733813	PD9774b	5	84370509	T	A	-	-	-	-	-	-	52	0	0	61	11	18.03278689	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.95444679	0.95444679	1	0.00125	0.99875	0	0	2	1.62E-14	1	1	1	NA	NA	NA	NA
1351289	1206733870	PD9774b	5	85136782	G	A	-	-	-	-	-	-	27	0	0	67	7	10.44776119	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.552983418	0.657352305	0.841228386	0.00375	0.99625	0	0	2	5.23E-08	1	1	1	NA	NA	NA	NA
1351289	1206734051	PD9774b	5	87646553	C	A	-	-	-	-	-	-	31	0	0	42	9	21.42857143	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	1.134180276	1.134180276	1	0.00125	0.99875	0	0	2	7.51E-13	1	1	1	NA	NA	NA	NA
1351289	1206734125	PD9774b	5	88954958	G	A	-	-	-	-	-	-	37	0	0	48	6	12.5	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.661605161	0.786475079	0.841228386	0.0025	0.9975	0	0	2	1.60E-07	1	1	1	NA	NA	NA	NA
1351289	1206734559	PD9774b	5	96283111	C	A	LNPEP	CCDS4087.1	r.?	-	-	intronic	39	0	0	42	8	19.04761905	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	1.008160246	1.008160246	1	0.0025	0.9975	0	0	2	3.96E-11	1	1	1	NA	NA	NA	NA
1351289	1206734619	PD9774b	5	96996099	G	A	-	-	-	-	-	-	32	0	0	58	9	15.51724138	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.821302959	0.976313891	0.841228386	0	0.99875	0.00125	0	2	1.67E-11	1	1	1	NA	NA	NA	NA
1351289	1206734626	PD9774b	5	97168732	C	A	-	-	-	-	-	-	35	0	0	55	10	18.18181818	0	0	NA	3	0	0	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.96233478	0.96233478	1	0	1	0	0	2	2.33E-13	1	1	1	NA	NA	NA	NA
1351289	1206735126	PD9774b	5	103543227	C	A	-	-	-	-	-	-	33	0	0	62	10	16.12903226	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.853684079	1.014806553	0.841228386	0.00125	0.9975	0.00125	0	2	8.29E-13	1	1	1	NA	NA	NA	NA
1351289	1206735358	PD9774b	5	106252857	G	A	-	-	-	-	-	-	32	0	0	58	12	20.68965517	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	1.095070612	1.095070612	1	0	0.99875	0.00125	0	2	1.76E-16	1	1	1	NA	NA	NA	NA
1351289	1206736057	PD9774b	5	115787617	T	A	SEMA6A	CCDS47256.1	r.?	-	-	intronic	41	0	0	52	9	17.30769231	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.916068685	0.916068685	1	0.005	0.995	0	0	2	5.92E-12	1	1	1	NA	NA	NA	NA
1351289	1206736351	PD9774b	5	120275916	T	A	-	-	-	-	-	-	27	0	0	50	10	20	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	1.058568258	1.058568258	1	0	1	0	0	2	8.36E-14	1	1	1	NA	NA	NA	NA
1351289	1206736596	PD9774b	5	123580727	G	A	-	-	-	-	-	-	34	0	0	38	5	13.15789474	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.696426485	0.827868504	0.841228386	0.00125	0.99875	0	0	2	1.37E-06	1	1	1	NA	NA	NA	NA
1351289	1206736650	PD9774b	5	124436231	C	A	-	-	-	-	-	-	26	0	0	37	6	16.21621622	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.858298587	1.020291994	0.841228386	0	0.99875	0.00125	0	2	3.18E-08	1	1	1	NA	NA	NA	NA
1351289	1206736749	PD9774b	5	125833613	C	A	GRAMD3	CCDS4136.1	r.?	-	-	downstream	27	0	0	46	9	19.56521739	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	1.035555904	1.035555904	1	0.0025	0.9975	0	0	2	1.82E-12	1	1	1	NA	NA	NA	NA
1351289	1206736900	PD9774b	5	128011050	T	A	SLC27A6	ENST00000508645	r.?	-	-	intronic	42	0	0	52	7	13.46153846	230	0	0	264	27	10.22727273	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.712497866	0.846973162	0.841228386	0.0025	0.99625	0.00125	0	2	8.58E-09	1	1.33E-26	1	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206736921	PD9774b	5	128308138	G	A	SLC27A6	CCDS4145.1	r.?	-	-	intronic	28	0	0	40	7	17.5	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.926247226	0.926247226	1	0.00375	0.99625	0	0	2	1.26E-09	1	1	1	NA	NA	NA	NA
1351289	1206736927	PD9774b	5	128422730	C	A	-	-	-	-	-	-	47	0	0	60	15	25	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	1.323210322	1.323210322	1	0	0.9975	0.0025	0	2	1.31E-21	1	1	1	NA	NA	NA	NA
1351289	1206736944	PD9774b	5	128644520	T	A	-	-	-	-	-	-	29	0	0	54	5	9.259259259	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.490077897	0.582574132	0.841228386	0.005	0.995	0	0	2	8.06E-06	1	1	1	NA	NA	NA	NA
1351289	1206737525	PD9774b	5	138017315	C	A	-	-	-	-	-	-	29	0	0	41	6	14.63414634	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.77456214	0.920751312	0.841228386	0	1	0	0	2	6.05E-08	1	1	1	NA	NA	NA	NA
1351289	1206737694	PD9774b	5	140563332	T	A	PCDHB16	CCDS4251.1	r.2353u>a	c.1198T>A	p.F400I	missense	31	0	0	31	6	19.35483871	215	0	0	89	10	11.23595506	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	1.024420895	1.024420895	1	0	1	0	0	2	1.03E-08	1	3.47E-11	1	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206737731	PD9774b	5	141177787	T	A	-	-	-	-	-	-	29	0	0	53	9	16.98113208	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.89878437	1.068418975	0.841228386	0	0.99875	0.00125	0	2	7.10E-12	1	1	1	NA	NA	NA	NA
1351289	1206737760	PD9774b	5	141502938	G	A	NDFIP1	CCDS4273.1	r.?	-	-	intronic	27	0	0	45	9	20	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	1.058568258	1.058568258	1	0	1	0	0	2	1.47E-12	1	1	1	NA	NA	NA	NA
1351289	1206737793	PD9774b	5	141930315	G	A	-	-	-	-	-	-	32	0	0	44	8	18.18181818	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.96233478	0.96233478	1	0	0.99875	0.00125	0	2	5.90E-11	1	1	1	NA	NA	NA	NA
1351289	1206737852	PD9774b	5	142816854	C	A	NR3C1	CCDS4278.1	r.?	-	-	upstream	35	0	0	55	7	12.72727273	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.673634346	0.800774626	0.841228386	0.00375	0.99625	0	0	2	1.28E-08	1	1	1	NA	NA	NA	NA
1351289	1206737899	PD9774b	5	143416723	C	A	-	-	-	-	-	-	41	0	0	52	10	19.23076923	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	1.017854094	1.017854094	1	0.00375	0.995	0.00125	0	2	1.28E-13	1	1	1	NA	NA	NA	NA
1351289	1206737923	PD9774b	5	144042119	C	A	-	-	-	-	-	-	43	0	0	53	6	11.32075472	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.59918958	0.712279317	0.841228386	0.00375	0.99625	0	0	2	2.93E-07	1	1	1	NA	NA	NA	NA
1351289	1206737961	PD9774b	5	144468921	C	A	-	-	-	-	-	-	34	0	0	38	5	13.15789474	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.696426485	0.827868504	0.841228386	0.005	0.995	0	0	2	1.37E-06	1	1	1	NA	NA	NA	NA
1351289	1206738451	PD9774b	5	151837767	G	A	-	-	-	-	-	-	34	0	0	54	9	16.66666667	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.882140215	1.048633438	0.841228386	0	1	0	0	2	8.48E-12	1	1	1	NA	NA	NA	NA
1351289	1206738710	PD9774b	5	155756904	G	A	SGCD	CCDS47325.1	r.?	-	-	intronic	30	0	0	33	4	12.12121212	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.64155652	0.762642501	0.841228386	0	1	0	0	2	2.28E-05	1	1	1	NA	NA	NA	NA
1351289	1206738765	PD9774b	5	156447886	T	A	-	-	-	-	-	-	32	0	0	51	10	19.60784314	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	1.037812018	1.037812018	1	0.00125	0.99875	0	0	2	1.04E-13	1	1	1	NA	NA	NA	NA
1351289	1206738795	PD9774b	5	156748109	C	A	CYFIP2	ENST00000347377	r.?	-	-	intronic	30	0	0	49	12	24.48979592	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	1.29620603	1.29620603	1	0	0.9975	0.0025	0	2	1.90E-17	1	1	1	NA	NA	NA	NA
1351289	1206738807	PD9774b	5	157080483	G	A	SOX30	CCDS4340.1	r.?	-	-	upstream	30	0	0	53	10	18.86792453	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.9986493	0.9986493	1	0	0.99875	0.00125	0	2	1.57E-13	1	1	1	NA	NA	NA	NA
1351289	1206739042	PD9774b	5	160042504	G	A	ATP10B	CCDS43394.1	r.?	-	-	intronic	48	0	0	58	9	15.51724138	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.821302959	0.976313891	0.841228386	0	1	0	0	2	1.67E-11	1	1	1	NA	NA	NA	NA
1351289	1206739073	PD9774b	5	160377014	C	A	-	-	-	-	-	-	41	0	0	48	8	16.66666667	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.882140215	1.048633438	0.841228386	0	1	0	0	2	1.23E-10	1	1	1	NA	NA	NA	NA
1351289	1206739546	PD9774b	5	167524704	G	A	ODZ2	ENST00000403607	r.?	-	-	intronic	44	0	0	44	8	18.18181818	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.96233478	0.96233478	1	0	1	0	0	2	5.90E-11	1	1	1	NA	NA	NA	NA
1351289	1206739628	PD9774b	5	168657615	C	A	SLIT3	CCDS4369.1	r.?	-	-	intronic	43	0	0	43	7	16.27906977	207	0	0	176	27	15.34090909	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.861625326	1.024246614	0.841228386	0	1	0	0	2	2.15E-09	1	1.73E-31	1	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206739810	PD9774b	5	171130204	G	A	-	-	-	-	-	-	34	0	0	46	6	13.04347826	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.690370603	0.820669647	0.841228386	0.00125	0.99875	0	0	2	1.23E-07	1	1	1	NA	NA	NA	NA
1351289	1206740053	PD9774b	5	174495118	T	A	-	-	-	-	-	-	30	0	0	55	4	7.272727273	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.384933912	0.4575855	0.841228386	0.0075	0.9925	0	0	2	0.000173903	1	1	1	NA	NA	NA	NA
1351289	1206740249	PD9774b	5	176607411	C	A	NSD1	CCDS4412.1	r.?	-	-	intronic	37	0	0	38	5	13.15789474	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.696426485	0.827868504	0.841228386	0.00125	0.99875	0	0	2	1.37E-06	1	1	1	NA	NA	NA	NA
1351289	1206740452	PD9774b	5	178686038	G	A	ADAMTS2	CCDS4444.1	r.?	-	-	intronic	27	0	0	26	8	30.76923077	75	0	0	26	2	7.692307692	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	1.628566551	1.628566551	1	0	0.9925	0.0075	0	2	5.63E-13	1	0.007502227	1	NA	NA	NA	NA
1351289	1206741310	PD9774b	6	6740929	G	A	-	-	-	-	-	-	25	0	0	50	9	18	0	0	NA	1	0	0	1	1	0	1	NA	NA	NA	unphased	0.981290323	0.981290323	1	0.0025	0.9975	0	0	2	4.07E-12	1	1	1	NA	NA	NA	NA
1351289	1206741543	PD9774b	6	9491030	G	A	-	-	-	-	-	-	29	0	0	40	8	20	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.090322581	1.090322581	1	0	1	0	0	2	2.61E-11	1	1	1	NA	NA	NA	NA
1351289	1206741557	PD9774b	6	9701068	T	A	OFCC1	ENST00000460363	r.?	-	-	intronic	38	0	0	43	7	16.27906977	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.887471868	0.887471868	1	0.00125	0.99875	0	0	2	2.15E-09	1	1	1	NA	NA	NA	NA
1351289	1206741576	PD9774b	6	9954946	G	A	OFCC1	ENST00000316020	r.?	-	-	intronic	36	0	0	43	8	18.60465116	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.014253563	1.014253563	1	0.00125	0.99875	0	0	2	4.85E-11	1	1	1	NA	NA	NA	NA
1351289	1206741704	PD9774b	6	11382676	G	A	NEDD9	ENST00000504387	r.?	-	-	upstream	24	0	0	47	11	23.40425532	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.275909403	1.275909403	1	0	0.9925	0.0075	0	2	7.21E-16	1	1	1	NA	NA	NA	NA
1351289	1206741725	PD9774b	6	11692542	C	A	-	-	-	-	-	-	41	0	0	47	5	10.63829787	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.579958819	0.579958819	1	0.0025	0.9975	0	0	2	4.02E-06	1	1	1	NA	NA	NA	NA
1351289	1206741907	PD9774b	6	13972253	T	A	RNF182	ENST00000488300	r.?	-	-	intronic	36	0	0	46	11	23.91304348	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.303646564	1.303646564	1	0	0.99125	0.00875	0	2	5.55E-16	1	1	1	NA	NA	NA	NA
1351289	1206742129	PD9774b	6	16544622	G	A	ATXN1	CCDS34342.1	r.?	-	-	intronic	25	0	0	57	5	8.771929825	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.478211658	0.478211658	1	0.01125	0.98875	0	0	2	1.05E-05	1	1	1	NA	NA	NA	NA
1351289	1206742428	PD9774b	6	19449718	G	A	-	-	-	-	-	-	28	0	0	32	7	21.875	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.192540323	1.192540323	1	0	1	0	0	2	2.36E-10	1	1	1	NA	NA	NA	NA
1351289	1206742689	PD9774b	6	22361341	C	A	-	-	-	-	-	-	39	0	0	54	9	16.66666667	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.908602151	0.908602151	1	0	0.99875	0.00125	0	2	8.48E-12	1	1	1	NA	NA	NA	NA
1351289	1206742910	PD9774b	6	24999625	G	A	-	-	-	-	-	-	33	0	0	49	8	16.32653061	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.89005925	0.89005925	1	0.0025	0.9975	0	0	2	1.47E-10	1	1	1	NA	NA	NA	NA
1351289	1206742967	PD9774b	6	25582285	T	A	LRRC16A	ENST00000329474	r.?	-	-	intronic	30	0	0	46	8	17.39130435	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.948106592	0.948106592	1	0.00125	0.99875	0	0	2	8.61E-11	1	1	1	NA	NA	NA	NA
1351289	1206743054	PD9774b	6	26663992	T	A	ZNF322A	ENST00000415922	r.?	-	-	upstream	37	0	0	47	11	23.40425532	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.275909403	1.275909403	1	0	0.9975	0.0025	0	2	7.21E-16	1	1	1	NA	NA	NA	NA
1351289	1206743204	PD9774b	6	27734611	G	A	AL009179.2	ENST00000508489	r.?	-	-	downstream	23	0	0	41	10	24.3902439	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.329661684	1.329661684	1	0	0.99875	0.00125	0	2	9.51E-15	1	1	1	NA	NA	NA	NA
1351289	1206743212	PD9774b	6	28045344	C	A	ZNF165	CCDS4643.1	r.?	-	-	upstream	32	0	0	43	8	18.60465116	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.014253563	1.014253563	1	0	1	0	0	2	4.85E-11	1	1	1	NA	NA	NA	NA
1351289	1206744319	PD9774b	6	37775229	T	A	-	-	-	-	-	-	40	0	0	54	10	18.51851852	0	0	NA	0	0	NA	0.816187611	0	0	0.183812389	1	0	0.816187611	unphased	0.975518614	0.975518614	1	0.00125	0.99875	0	0	2	1.91E-13	1	1	1	NA	NA	NA	NA
1351289	1206744795	PD9774b	6	44673925	C	A	-	-	-	-	-	-	31	0	0	49	6	12.24489796	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.545095458	0.545095458	1	0.01125	0.98875	0	0	2	1.82E-07	1	1	1	NA	NA	NA	NA
1351289	1206745337	PD9774b	6	52469658	G	A	-	-	-	-	-	-	36	0	0	52	10	19.23076923	0	0	NA	1	0	0	1.592547364	1	0	0.407452636	1	1	0.592547364	unphased	1.162338513	1.162338513	1	0.00125	0.9975	0.00125	0	2	1.28E-13	1	1	1	NA	NA	NA	NA
1351289	1206745347	PD9774b	6	52591300	G	A	-	-	-	-	-	-	28	0	0	52	10	19.23076923	0	0	NA	0	0	NA	1.592547364	1	0	0.407452636	1	1	0.592547364	unphased	1.162338513	1.162338513	1	0	0.99875	0.00125	0	2	1.28E-13	1	1	1	NA	NA	NA	NA
1351289	1206746345	PD9774b	6	57886458	C	A	-	-	-	-	-	-	42	0	0	64	9	14.0625	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.907258065	0.907258065	1	0	1	0	0	2	4.20E-11	1	1	1	NA	NA	NA	NA
1351289	1206746658	PD9774b	6	61979973	T	A	-	-	-	-	-	-	47	0	0	49	7	14.28571429	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.921658986	0.921658986	1	0	1	0	0	2	5.58E-09	1	1	1	NA	NA	NA	NA
1351289	1206746766	PD9774b	6	63140812	T	A	-	-	-	-	-	-	35	0	0	51	6	11.76470588	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.759013283	0.759013283	1	0.00125	0.99875	0	0	2	2.32E-07	1	1	1	NA	NA	NA	NA
1351289	1206746794	PD9774b	6	63470062	C	A	-	-	-	-	-	-	51	0	0	62	10	16.12903226	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.040582726	1.040582726	1	0.00125	0.9975	0.00125	0	2	8.29E-13	1	1	1	NA	NA	NA	NA
1351289	1206746839	PD9774b	6	63870329	C	A	-	-	-	-	-	-	32	0	0	61	10	16.39344262	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.05764146	1.05764146	1	0	1	0	0	2	6.98E-13	1	1	1	NA	NA	NA	NA
1351289	1206746923	PD9774b	6	64753488	C	A	EYS	CCDS47445.1	r.?	-	-	intronic	40	0	0	54	9	16.66666667	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.075268817	1.075268817	1	0.00125	0.9975	0.00125	0	2	8.48E-12	1	1	1	NA	NA	NA	NA
1351289	1206747072	PD9774b	6	66612818	G	A	-	-	-	-	-	-	34	0	0	48	5	10.41666667	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.672043011	0.672043011	1	0.00125	0.99875	0	0	2	4.47E-06	1	1	1	NA	NA	NA	NA
1351289	1206747100	PD9774b	6	66856344	T	A	-	-	-	-	-	-	26	0	0	43	5	11.62790698	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.750187547	0.750187547	1	0	0.99875	0.00125	0	2	2.57E-06	1	1	1	NA	NA	NA	NA
1351289	1206747377	PD9774b	6	69525121	G	A	BAI3	CCDS4968.1	r.?	-	-	intronic	38	0	0	61	6	9.836065574	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.634584876	0.634584876	1	0.01	0.99	0	0	2	6.85E-07	1	1	1	NA	NA	NA	NA
1351289	1206747385	PD9774b	6	69607080	T	A	BAI3	CCDS4968.1	r.?	-	-	intronic	21	0	0	32	4	12.5	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.806451613	0.806451613	1	0.00375	0.995	0.00125	0	2	2.01E-05	1	1	1	NA	NA	NA	NA
1351289	1206747398	PD9774b	6	69773453	C	A	BAI3	CCDS4968.1	r.?	-	-	intronic	29	0	0	64	8	12.5	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.806451613	0.806451613	1	0.00125	0.99875	0	0	2	1.35E-09	1	1	1	NA	NA	NA	NA
1351289	1206747488	PD9774b	6	70733586	T	A	COL19A1	CCDS4970.1	r.?	-	-	intronic	28	0	0	54	6	11.11111111	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.716845878	0.716845878	1	0.0025	0.9975	0	0	2	3.29E-07	1	1	1	NA	NA	NA	NA
1351289	1206747538	PD9774b	6	71350195	T	A	-	-	-	-	-	-	46	0	0	56	9	16.07142857	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.036866359	1.036866359	1	0	0.99875	0.00125	0	2	1.20E-11	1	1	1	NA	NA	NA	NA
1351289	1206747560	PD9774b	6	71589563	C	A	B3GAT2	CCDS4974.1	r.?	-	-	intronic	26	0	0	25	3	12	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.774193548	0.774193548	1	0.005	0.995	0	0	2	0.00026475	1	1	1	NA	NA	NA	NA
1351289	1206747578	PD9774b	6	71806290	G	A	-	-	-	-	-	-	36	0	0	45	8	17.77777778	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.146953405	1.146953405	1	0.00125	0.995	0.00375	0	2	7.14E-11	1	1	1	NA	NA	NA	NA
1351289	1206747728	PD9774b	6	73434566	G	A	KCNQ5	CCDS4976.1	r.?	-	-	intronic	38	0	0	74	11	14.86486486	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.95902354	0.95902354	1	0.0025	0.99625	0.00125	0	2	1.53E-13	1	1	1	NA	NA	NA	NA
1351289	1206747750	PD9774b	6	73712018	C	A	KCNQ5	CCDS4976.1	r.?	-	-	intronic	44	0	0	57	7	12.28070175	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.792303339	0.792303339	1	0.00125	0.9975	0.00125	0	2	1.66E-08	1	1	1	NA	NA	NA	NA
1351289	1206747926	PD9774b	6	75427938	T	A	-	-	-	-	-	-	40	0	0	59	7	11.86440678	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.765445599	0.765445599	1	0.00125	0.99875	0	0	2	2.12E-08	1	1	1	NA	NA	NA	NA
1351289	1206748064	PD9774b	6	76954074	C	A	-	-	-	-	-	-	38	0	0	55	5	9.090909091	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.586510264	0.586510264	1	0.0025	0.9975	0	0	2	8.83E-06	1	1	1	NA	NA	NA	NA
1351289	1206748065	PD9774b	6	76959295	G	A	-	-	-	-	-	-	30	0	0	53	12	22.64150943	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.460742544	1.460742544	1	0	0.99	0.01	0	2	5.39E-17	1	1	1	NA	NA	NA	NA
1351289	1206748148	PD9774b	6	77894118	C	A	-	-	-	-	-	-	41	0	0	60	10	16.66666667	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.075268817	1.075268817	1	0.00125	0.99875	0	0	2	5.86E-13	1	1	1	NA	NA	NA	NA
1351289	1206748165	PD9774b	6	78130180	G	A	-	-	-	-	-	-	26	0	0	58	7	12.06896552	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.778642937	0.778642937	1	0.0025	0.9975	0	0	2	1.88E-08	1	1	1	NA	NA	NA	NA
1351289	1206748206	PD9774b	6	78566937	T	A	-	-	-	-	-	-	38	0	0	51	8	15.68627451	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.01201771	1.01201771	1	0	0.99875	0.00125	0	2	2.05E-10	1	1	1	NA	NA	NA	NA
1351289	1206748391	PD9774b	6	81160983	G	A	-	-	-	-	-	-	37	0	0	59	6	10.16949153	0	0	NA	0	0	NA	1.628865241	1	0	0.371134759	1	1	0.628865241	unphased	0.61835371	0.983284922	0.628865241	0.00125	0.995	0.00375	0	2	5.61E-07	1	1	1	NA	NA	NA	NA
1351289	1206748559	PD9774b	6	82996450	T	A	-	-	-	-	-	-	31	0	0	51	14	27.45098039	0	0	NA	0	0	NA	1.628865241	1	0	0.371134759	1	1	0.628865241	unphased	1.669150863	1.669150863	1	0	0.97125	0.02875	0	2	6.64E-21	1	1	1	NA	NA	NA	NA
1351289	1206748775	PD9774b	6	85527624	T	A	-	-	-	-	-	-	26	0	0	32	4	12.5	0	0	NA	0	0	NA	1.628865241	1	0	0.371134759	1	1	0.628865241	unphased	0.760059768	1.208621049	0.628865241	0	0.99875	0.00125	0	2	2.01E-05	1	1	1	NA	NA	NA	NA
1351289	1206748999	PD9774b	6	88897472	G	A	-	-	-	-	-	-	42	0	0	37	6	16.21621622	0	0	NA	0	0	NA	1.628865241	1	0	0.371134759	1	1	0.628865241	unphased	0.986023483	0.986023483	1	0.00125	0.9975	0.00125	0	2	3.18E-08	1	1	1	NA	NA	NA	NA
1351289	1206749062	PD9774b	6	89761727	C	A	-	-	-	-	-	-	37	0	0	46	5	10.86956522	0	0	NA	0	0	NA	1.628865241	1	0	0.371134759	1	1	0.628865241	unphased	0.660921537	1.050974826	0.628865241	0.0025	0.99625	0.00125	0	2	3.61E-06	1	1	1	NA	NA	NA	NA
1351289	1206749112	PD9774b	6	90115900	C	A	RRAGD	CCDS5022.1	r.?	-	-	intronic	35	0	0	72	12	16.66666667	0	0	NA	0	0	NA	1.628865241	1	0	0.371134759	1	1	0.628865241	unphased	1.013413024	1.013413024	1	0.00125	0.99875	0	0	2	2.84E-15	1	1	1	NA	NA	NA	NA
1351289	1206749262	PD9774b	6	92245602	G	A	-	-	-	-	-	-	37	0	0	58	11	18.96551724	0	0	NA	0	0	NA	1.628865241	1	0	0.371134759	1	1	0.628865241	unphased	1.153194131	1.153194131	1	0	0.99875	0.00125	0	2	8.96E-15	1	1	1	NA	NA	NA	NA
1351289	1206749291	PD9774b	6	92759383	T	A	-	-	-	-	-	-	48	0	0	54	4	7.407407407	0	0	NA	0	0	NA	1.628865241	1	0	0.371134759	1	1	0.628865241	unphased	0.450405788	0.716219881	0.628865241	0.005	0.995	0	0	2	0.000161898	1	1	1	NA	NA	NA	NA
1351289	1206749396	PD9774b	6	94074103	G	A	EPHA7	CCDS5031.1	r.?	-	-	intronic	35	0	0	43	7	16.27906977	0	0	NA	0	0	NA	1.628865241	1	0	0.371134759	1	1	0.628865241	unphased	0.989845279	0.989845279	1	0.00125	0.9975	0.00125	0	2	2.15E-09	1	1	1	NA	NA	NA	NA
1351289	1206749419	PD9774b	6	94354808	G	A	-	-	-	-	-	-	33	0	0	59	7	11.86440678	0	0	NA	0	0	NA	1.628865241	1	0	0.371134759	1	1	0.628865241	unphased	0.721412661	1.147165742	0.628865241	0.0025	0.9975	0	0	2	2.12E-08	1	1	1	NA	NA	NA	NA
1351289	1206749748	PD9774b	6	99538071	C	A	-	-	-	-	-	-	42	0	0	66	5	7.575757576	0	0	NA	0	0	NA	1.628865241	1	0	0.371134759	1	1	0.628865241	unphased	0.460642284	0.732497606	0.628865241	0.0025	0.99625	0.00125	0	2	2.17E-05	1	1	1	NA	NA	NA	NA
1351289	1206749888	PD9774b	6	101463784	G	A	-	-	-	-	-	-	30	0	0	55	6	10.90909091	0	0	NA	0	0	NA	1.628865241	1	0	0.371134759	1	1	0.628865241	unphased	0.663324889	1.054796552	0.628865241	0.00125	0.99875	0	0	2	3.67E-07	1	1	1	NA	NA	NA	NA
1351289	1206750039	PD9774b	6	103241523	C	A	-	-	-	-	-	-	40	0	0	46	4	8.695652174	0	0	NA	0	0	NA	1.628865241	1	0	0.371134759	1	1	0.628865241	unphased	0.52873723	0.840779861	0.628865241	0.00125	0.99875	0	0	2	8.62E-05	1	1	1	NA	NA	NA	NA
1351289	1206750094	PD9774b	6	103765373	G	A	-	-	-	-	-	-	42	0	0	54	6	11.11111111	0	0	NA	1	0	0	1.628865241	1	0	0.371134759	1	1	0.628865241	unphased	0.675608683	1.074329822	0.628865241	0	0.99875	0.00125	0	2	3.29E-07	1	1	1	NA	NA	NA	NA
1351289	1206750592	PD9774b	6	110099452	T	A	FIG4	CCDS5078.1	r.?	-	-	intronic	31	0	0	49	4	8.163265306	0	0	NA	0	0	NA	1.628865241	1	0	0.371134759	1	1	0.628865241	unphased	0.496365563	0.789303543	0.628865241	0.0025	0.995	0.0025	0	2	0.000110643	1	1	1	NA	NA	NA	NA
1351289	1206750765	PD9774b	6	112097254	G	A	FYN	CCDS5095.1	r.?	-	-	intronic	39	0	0	61	10	16.39344262	0	0	NA	0	0	NA	1.628865241	1	0	0.371134759	1	1	0.628865241	unphased	0.996799696	0.996799696	1	0	1	0	0	2	6.98E-13	1	1	1	NA	NA	NA	NA
1351289	1206750952	PD9774b	6	114439272	C	A	-	-	-	-	-	-	30	0	0	72	6	8.333333333	0	0	NA	0	0	NA	1.628865241	1	0	0.371134759	1	1	0.628865241	unphased	0.506706512	0.805747366	0.628865241	0.00125	0.99875	0	0	2	1.84E-06	1	1	1	NA	NA	NA	NA
1351289	1206750991	PD9774b	6	114922521	G	A	-	-	-	-	-	-	37	0	0	61	7	11.47540984	0	0	NA	0	0	NA	1.628865241	1	0	0.371134759	1	1	0.628865241	unphased	0.697759787	1.10955375	0.628865241	0	0.99875	0.00125	0	2	2.69E-08	1	1	1	NA	NA	NA	NA
1351289	1206750992	PD9774b	6	114931015	T	A	-	-	-	-	-	-	46	0	0	41	6	14.63414634	0	0	NA	0	0	NA	1.628865241	1	0	0.371134759	1	1	0.628865241	unphased	0.88982607	0.88982607	1	0.00125	0.99875	0	0	2	6.05E-08	1	1	1	NA	NA	NA	NA
1351289	1206751195	PD9774b	6	117559991	C	A	-	-	-	-	-	-	39	0	0	67	11	16.41791045	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.059220029	1.059220029	1	0	1	0	0	2	4.85E-14	1	1	1	NA	NA	NA	NA
1351289	1206751287	PD9774b	6	118611245	C	A	SLC35F1	CCDS34524.1	r.?	-	-	intronic	36	0	0	40	6	15	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.967741935	0.967741935	1	0.0025	0.9975	0	0	2	5.18E-08	1	1	1	NA	NA	NA	NA
1351289	1206751309	PD9774b	6	118863502	T	A	C6orf204	CCDS43498.1	r.?	-	-	intronic	45	0	0	54	4	7.407407407	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.477897252	0.477897252	1	0.0075	0.9925	0	0	2	0.000161898	1	1	1	NA	NA	NA	NA
1351289	1206751455	PD9774b	6	120878346	C	A	-	-	-	-	-	-	33	0	0	50	5	10	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.64516129	0.64516129	1	0	1	0	0	2	5.49E-06	1	1	1	NA	NA	NA	NA
1351289	1206751625	PD9774b	6	122449250	T	A	-	-	-	-	-	-	35	0	0	55	13	23.63636364	1	0	0	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.524926686	1.524926686	1	0	0.9875	0.0125	0	2	1.46E-18	1	1	1	NA	NA	NA	NA
1351289	1206751633	PD9774b	6	122576895	G	A	-	-	-	-	-	-	32	0	0	61	7	11.47540984	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.740349022	0.740349022	1	0.00125	0.99875	0	0	2	2.69E-08	1	1	1	NA	NA	NA	NA
1351289	1206751669	PD9774b	6	123003504	G	A	PKIB	CCDS5126.1	r.?	-	-	intronic	29	0	0	41	6	14.63414634	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.944138474	0.944138474	1	0	1	0	0	2	6.05E-08	1	1	1	NA	NA	NA	NA
1351289	1206751717	PD9774b	6	123740049	C	A	TRDN	ENST00000334268	r.?	-	-	intronic	32	0	0	45	6	13.33333333	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.860215054	0.860215054	1	0.00125	0.9975	0.00125	0	2	1.08E-07	1	1	1	NA	NA	NA	NA
1351289	1206751808	PD9774b	6	124730799	C	A	NKAIN2	CCDS34526.1	r.?	-	-	intronic	45	0	0	50	5	10	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.64516129	0.64516129	1	0.0075	0.9925	0	0	2	5.49E-06	1	1	1	NA	NA	NA	NA
1351289	1206752002	PD9774b	6	127641562	G	A	ECHDC1	CCDS43504.1	r.?	-	-	intronic	45	0	0	51	8	15.68627451	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.01201771	1.01201771	1	0	1	0	0	2	2.05E-10	1	1	1	NA	NA	NA	NA
1351289	1206752022	PD9774b	6	127940280	T	A	-	-	-	-	-	-	35	0	0	69	5	7.246376812	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.467508181	0.467508181	1	0.01125	0.98875	0	0	2	2.69E-05	1	1	1	NA	NA	NA	NA
1351289	1206752306	PD9774b	6	131480156	C	A	AKAP7	CCDS5142.1	r.?	-	-	intronic	36	0	0	52	7	13.46153846	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.868486352	0.868486352	1	0	0.99875	0.00125	0	2	8.58E-09	1	1	1	NA	NA	NA	NA
1351289	1206752685	PD9774b	6	135891599	G	A	-	-	-	-	-	-	27	0	0	58	12	20.68965517	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.334816463	1.334816463	1	0	0.9975	0.0025	0	2	1.76E-16	1	1	1	NA	NA	NA	NA
1351289	1206752686	PD9774b	6	135896237	C	A	-	-	-	-	-	-	28	0	0	61	11	18.03278689	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.163405605	1.163405605	1	0	0.99875	0.00125	0	2	1.62E-14	1	1	1	NA	NA	NA	NA
1351289	1206752732	PD9774b	6	136472850	T	A	PDE7B	CCDS5175.1	r.?	-	-	intronic	22	0	0	54	5	9.259259259	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.597371565	0.597371565	1	0.00875	0.99125	0	0	2	8.06E-06	1	1	1	NA	NA	NA	NA
1351289	1206752960	PD9774b	6	139412645	C	A	-	-	-	-	-	-	25	0	0	39	6	15.38461538	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.992555831	0.992555831	1	0	0.99875	0.00125	0	2	4.43E-08	1	1	1	NA	NA	NA	NA
1351289	1206753100	PD9774b	6	141242396	T	A	-	-	-	-	-	-	38	0	0	57	7	12.28070175	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.792303339	0.792303339	1	0.005	0.995	0	0	2	1.66E-08	1	1	1	NA	NA	NA	NA
1351289	1206753116	PD9774b	6	141661321	C	A	-	-	-	-	-	-	38	0	0	54	8	14.81481481	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.955794504	0.955794504	1	0	1	0	0	2	3.31E-10	1	1	1	NA	NA	NA	NA
1351289	1206753286	PD9774b	6	143891899	C	A	PHACTR2	ENST00000397980	r.?	-	-	intronic	26	0	0	47	6	12.76595745	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.823610158	0.823610158	1	0	0.99875	0.00125	0	2	1.41E-07	1	1	1	NA	NA	NA	NA
1351289	1206753388	PD9774b	6	145463092	T	A	-	-	-	-	-	-	33	0	0	64	11	17.1875	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.108870968	1.108870968	1	0	0.9975	0.0025	0	2	2.85E-14	1	1	1	NA	NA	NA	NA
1351289	1206753392	PD9774b	6	145629990	T	A	-	-	-	-	-	-	33	0	0	69	5	7.246376812	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.467508181	0.467508181	1	0.0175	0.9825	0	0	2	2.69E-05	1	1	1	NA	NA	NA	NA
1351289	1206753438	PD9774b	6	146549780	C	A	GRM1	CCDS47497.1	r.?	-	-	intronic	48	0	0	91	6	6.593406593	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.425381071	0.425381071	1	0.02625	0.97375	0	0	2	7.24E-06	1	1	1	NA	NA	NA	NA
1351289	1206753585	PD9774b	6	148755921	G	A	SASH1	CCDS5212.1	r.?	-	-	intronic	42	0	0	59	7	11.86440678	0	0	NA	0	0	NA	0.864122853	0	0	0.135877147	1	0	0.864122853	unphased	0.630680513	0.72985052	0.864122853	0.00125	0.99875	0	0	2	2.12E-08	1	1	1	NA	NA	NA	NA
1351289	1206753910	PD9774b	6	151924498	T	A	C6orf97	CCDS43515.1	r.?	-	-	intronic	34	0	0	55	8	14.54545455	0	0	NA	0	0	NA	0.864122853	0	0	0.135877147	1	0	0.864122853	unphased	0.773197928	0.89477778	0.864122853	0.00125	0.99875	0	0	2	3.86E-10	1	1	1	NA	NA	NA	NA
1351289	1206753925	PD9774b	6	152206631	C	A	ESR1	CCDS5234.1	r.?	-	-	intronic	37	0	0	41	9	21.95121951	0	0	NA	0	0	NA	0.864122853	0	0	0.135877147	1	0	0.864122853	unphased	1.166868825	1.166868825	1	0	0.99875	0.00125	0	2	5.92E-13	1	1	1	NA	NA	NA	NA
1351289	1206754446	PD9774b	6	157960421	G	A	ZDHHC14	CCDS5252.1	r.?	-	-	intronic	37	0	0	38	5	13.15789474	0	0	NA	0	0	NA	0.864122853	0	0	0.135877147	1	0	0.864122853	unphased	0.699438915	0.809420689	0.864122853	0.00125	0.99875	0	0	2	1.37E-06	1	1	1	NA	NA	NA	NA
1351289	1206754518	PD9774b	6	159045752	C	A	TMEM181	CCDS43520.1	r.?	-	-	intronic	44	0	0	45	7	15.55555556	0	0	NA	0	0	NA	0.864122853	0	0	0.135877147	1	0	0.864122853	unphased	0.826892229	0.956915126	0.864122853	0	0.99875	0.00125	0	2	3.00E-09	1	1	1	NA	NA	NA	NA
1351289	1206755051	PD9774b	6	166482007	C	A	-	-	-	-	-	-	33	0	0	31	7	22.58064516	0	0	NA	0	0	NA	0.864122853	0	0	0.135877147	1	0	0.864122853	unphased	1.200327429	1.200327429	1	0	1	0	0	2	1.85E-10	1	1	1	NA	NA	NA	NA
1351289	1206755232	PD9774b	6	168622900	G	A	-	-	-	-	-	-	30	0	0	52	12	23.07692308	0	0	NA	0	0	NA	0.864122853	0	0	0.135877147	1	0	0.864122853	unphased	1.226708251	1.226708251	1	0	1	0	0	2	4.19E-17	1	1	1	NA	NA	NA	NA
1351289	1206755607	PD9774b	7	166360	G	A	-	-	-	-	-	-	24	0	0	30	5	16.66666667	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.908602151	0.908602151	1	0.00125	0.99875	0	0	2	4.01E-07	1	1	1	NA	NA	NA	NA
1351289	1206755843	PD9774b	7	2098510	G	A	MAD1L1	CCDS43539.1	r.?	-	-	intronic	27	0	0	44	4	9.090909091	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.495601173	0.495601173	1	0.00625	0.99375	0	0	2	7.23E-05	1	1	1	NA	NA	NA	NA
1351289	1206755953	PD9774b	7	2911859	C	A	-	-	-	-	-	-	36	0	0	35	9	25.71428571	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.401843318	1.401843318	1	0.00125	0.99	0.00875	0	2	1.23E-13	1	1	1	NA	NA	NA	NA
1351289	1206756605	PD9774b	7	10525661	T	A	AC009945.1	ENST00000510654	r.?	-	-	intronic	30	0	0	54	6	11.11111111	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.605734767	0.605734767	1	0.00625	0.99375	0	0	2	3.29E-07	1	1	1	NA	NA	NA	NA
1351289	1206756886	PD9774b	7	14559802	T	A	DGKB	CCDS47547.1	r.?	-	-	intronic	44	0	0	55	6	10.90909091	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.594721408	0.594721408	1	0.005	0.995	0	0	2	3.67E-07	1	1	1	NA	NA	NA	NA
1351289	1206757046	PD9774b	7	16691853	G	A	BZW2	CCDS5362.1	r.?	-	-	intronic	39	0	0	61	8	13.1147541	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.714965627	0.714965627	1	0.00375	0.99625	0	0	2	9.09E-10	1	1	1	NA	NA	NA	NA
1351289	1206757112	PD9774b	7	17715416	G	A	-	-	-	-	-	-	44	0	0	72	16	22.22222222	0	0	NA	0	0	NA	2	2	0	1	NA	NA	NA	unphased	1.433691756	1.433691756	1	0	0.9875	0.0125	0	2	4.82E-22	1	1	1	NA	NA	NA	NA
1351289	1206757648	PD9774b	7	25044467	C	A	-	-	-	-	-	-	36	0	0	50	4	8	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.436129032	0.436129032	1	0.02125	0.97875	0	0	2	0.000119787	1	1	1	NA	NA	NA	NA
1351289	1206757697	PD9774b	7	25844797	G	A	-	-	-	-	-	-	36	0	0	48	8	16.66666667	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.908602151	0.908602151	1	0	1	0	0	2	1.23E-10	1	1	1	NA	NA	NA	NA
1351289	1206758554	PD9774b	7	36138136	T	A	-	-	-	-	-	-	39	0	0	58	11	18.96551724	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.033926585	1.033926585	1	0	1	0	0	2	8.96E-15	1	1	1	NA	NA	NA	NA
1351289	1206758611	PD9774b	7	37151234	T	A	ELMO1	CCDS5449.1	r.?	-	-	intronic	33	0	0	43	6	13.95348837	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.760690173	0.760690173	1	0.00125	0.99875	0	0	2	8.13E-08	1	1	1	NA	NA	NA	NA
1351289	1206758951	PD9774b	7	41601654	G	A	ENSG00000236089	ENST00000443116	r.?	-	-	intronic	33	0	0	51	13	25.49019608	200	1	0.5	446	82	18.38565022	1	1	0	1	NA	NA	NA	unphased	1.389626818	1.389626818	1	0.00125	0.98625	0.0125	0	2	4.87E-19	1	4.47E-99	0.633042178	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206758981	PD9774b	7	42266755	C	A	GLI3	CCDS5465.1	r.?	-	-	intronic	34	0	0	41	8	19.51219512	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.063729347	1.063729347	1	0	1	0	0	2	3.22E-11	1	1	1	NA	NA	NA	NA
1351289	1206759339	PD9774b	7	46127532	C	A	-	-	-	-	-	-	36	0	0	61	8	13.1147541	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.714965627	0.714965627	1	0.0075	0.9925	0	0	2	9.09E-10	1	1	1	NA	NA	NA	NA
1351289	1206759385	PD9774b	7	46915217	T	A	-	-	-	-	-	-	30	0	0	48	8	16.66666667	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.908602151	0.908602151	1	0	1	0	0	2	1.23E-10	1	1	1	NA	NA	NA	NA
1351289	1206759539	PD9774b	7	49220145	T	A	-	-	-	-	-	-	35	0	0	46	13	28.26086957	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.540673212	1.540673212	1	0	0.985	0.015	0	2	1.07E-19	1	1	1	NA	NA	NA	NA
1351289	1206759675	PD9774b	7	50945704	C	A	-	-	-	-	-	-	29	0	0	45	10	22.22222222	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.211469534	1.211469534	1	0	1	0	0	2	2.66E-14	1	1	1	NA	NA	NA	NA
1351289	1206759708	PD9774b	7	51366908	T	A	COBL	CCDS34637.1	r.?	-	-	intronic	32	0	0	50	5	10	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.54516129	0.54516129	1	0.00375	0.99625	0	0	2	5.49E-06	1	1	1	NA	NA	NA	NA
1351289	1206759728	PD9774b	7	51562681	G	A	-	-	-	-	-	-	32	0	0	60	5	8.333333333	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.454301075	0.454301075	1	0.015	0.985	0	0	2	1.36E-05	1	1	1	NA	NA	NA	NA
1351289	1206760416	PD9774b	7	57209471	G	A	ZNF733	CCDS43590.1	r.?	-	-	upstream	42	0	0	43	8	18.60465116	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.200300075	1.200300075	1	0	0.99875	0.00125	0	2	4.85E-11	1	1	1	NA	NA	NA	NA
1351289	1206760443	PD9774b	7	57468764	C	A	-	-	-	-	-	-	35	0	0	49	6	12.24489796	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.789993417	0.789993417	1	0.00375	0.99625	0	0	2	1.82E-07	1	1	1	NA	NA	NA	NA
1351289	1206766350	PD9774b	7	63311929	G	A	-	-	-	-	-	-	30	0	0	51	8	15.68627451	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.01201771	1.01201771	1	0.00375	0.995	0.00125	0	2	2.05E-10	1	1	1	NA	NA	NA	NA
1351289	1206766357	PD9774b	7	63372063	C	A	-	-	-	-	-	-	22	0	0	46	8	17.39130435	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.122019635	1.122019635	1	0.00125	0.995	0.00375	0	2	8.61E-11	1	1	1	NA	NA	NA	NA
1351289	1206767106	PD9774b	7	65867293	G	A	AC008267.2	ENST00000418858	r.?	-	-	intronic	38	0	0	53	9	16.98113208	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.095556908	1.095556908	1	0	0.9975	0.0025	0	2	7.10E-12	1	1	1	NA	NA	NA	NA
1351289	1206767263	PD9774b	7	67234488	C	A	-	-	-	-	-	-	27	0	0	46	5	10.86956522	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.701262272	0.701262272	1	0	1	0	0	2	3.61E-06	1	1	1	NA	NA	NA	NA
1351289	1206767771	PD9774b	7	71395979	G	A	CALN1	CCDS47603.1	r.?	-	-	intronic	24	0	0	54	8	14.81481481	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.955794504	0.955794504	1	0.0025	0.9975	0	0	2	3.31E-10	1	1	1	NA	NA	NA	NA
1351289	1206767821	PD9774b	7	71824654	C	A	CALN1	CCDS47603.1	r.?	-	-	intronic	31	0	0	59	6	10.16949153	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.656096227	0.656096227	1	0.00375	0.99625	0	0	2	5.61E-07	1	1	1	NA	NA	NA	NA
1351289	1206767942	PD9774b	7	72188143	G	A	-	-	-	-	-	-	47	0	0	33	6	18.18181818	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.173020528	1.173020528	1	0.0025	0.995	0.0025	0	2	1.54E-08	1	1	1	NA	NA	NA	NA
1351289	1206767994	PD9774b	7	72745120	G	A	TRIM50	CCDS34654.1	r.?	-	-	upstream	36	0	0	46	9	19.56521739	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.26227209	1.26227209	1	0	0.9975	0.0025	0	2	1.82E-12	1	1	1	NA	NA	NA	NA
1351289	1206768003	PD9774b	7	72829238	T	A	-	-	-	-	-	-	38	0	0	45	3	6.666666667	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.430107527	0.430107527	1	0.0075	0.9925	0	0	2	0.001516071	1	1	1	NA	NA	NA	NA
1351289	1206768227	PD9774b	7	75287771	G	A	HIP1	CCDS34669.1	r.?	-	-	intronic	28	0	0	49	5	10.20408163	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.658327847	0.658327847	1	0.0025	0.9975	0	0	2	4.96E-06	1	1	1	NA	NA	NA	NA
1351289	1206768642	PD9774b	7	79696706	T	A	-	-	-	-	-	-	44	0	0	55	10	18.18181818	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.173020528	1.173020528	1	0.00125	0.99875	0	0	2	2.33E-13	1	1	1	NA	NA	NA	NA
1351289	1206768811	PD9774b	7	81891881	C	A	CACNA2D1	CCDS5598.1	r.?	-	-	intronic	27	0	0	55	9	16.36363636	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.055718475	1.055718475	1	0	0.99875	0.00125	0	2	1.01E-11	1	1	1	NA	NA	NA	NA
1351289	1206768916	PD9774b	7	82949055	T	A	-	-	-	-	-	-	31	0	0	74	8	10.81081081	0	0	NA	0	0	NA	2.765129909	1	1	0.234870091	2	1	0.765129909	unphased	0.780188412	1.019680976	0.765129909	0.00125	0.9975	0.00125	0	2	4.39E-09	1	1	1	NA	NA	NA	NA
1351289	1206768934	PD9774b	7	83052397	C	A	SEMA3E	CCDS34674.1	r.?	-	-	intronic	36	0	0	58	7	12.06896552	0	0	NA	0	0	NA	2.765129909	1	1	0.234870091	2	1	0.765129909	unphased	0.870986201	0.870986201	1	0.00375	0.99625	0	0	2	1.88E-08	1	1	1	NA	NA	NA	NA
1351289	1206769109	PD9774b	7	84915798	C	A	-	-	-	-	-	-	39	0	0	62	9	14.51612903	0	0	NA	0	0	NA	1.850213785	1	0	0.149786215	1	1	0.850213785	unphased	0.914781293	1.075942674	0.850213785	0	1	0	0	2	3.12E-11	1	1	1	NA	NA	NA	NA
1351289	1206769184	PD9774b	7	85857390	C	A	-	-	-	-	-	-	31	0	0	53	6	11.32075472	0	0	NA	0	0	NA	1.850213785	1	0	0.149786215	1	1	0.850213785	unphased	0.713414342	0.839099947	0.850213785	0.00375	0.995	0.00125	0	2	2.93E-07	1	1	1	NA	NA	NA	NA
1351289	1206769229	PD9774b	7	86169801	T	A	-	-	-	-	-	-	37	0	0	44	5	11.36363636	0	0	NA	0	0	NA	1.850213785	1	0	0.149786215	1	1	0.850213785	unphased	0.716116669	0.842278356	0.850213785	0	0.99875	0.00125	0	2	2.88E-06	1	1	1	NA	NA	NA	NA
1351289	1206769235	PD9774b	7	86326157	T	A	GRM3	CCDS5600.1	r.?	-	-	intronic	25	0	0	53	5	9.433962264	0	0	NA	0	0	NA	1.850213785	1	0	0.149786215	1	1	0.850213785	unphased	0.594511952	0.699249956	0.850213785	0.0025	0.9975	0	0	2	7.34E-06	1	1	1	NA	NA	NA	NA
1351289	1206769236	PD9774b	7	86452635	C	A	GRM3	CCDS5600.1	r.?	-	-	intronic	34	0	0	57	10	17.54385965	0	0	NA	0	0	NA	1.850213785	1	0	0.149786215	1	1	0.850213785	unphased	1.105583629	1.105583629	1	0.00125	0.99875	0	0	2	3.40E-13	1	1	1	NA	NA	NA	NA
1351289	1206769262	PD9774b	7	87060412	T	A	ABCB4	CCDS5606.1	r.?	-	-	intronic	24	0	0	55	9	16.36363636	0	0	NA	0	0	NA	1.850213785	1	0	0.149786215	1	1	0.850213785	unphased	1.031208003	1.031208003	1	0.00125	0.99875	0	0	2	1.01E-11	1	1	1	NA	NA	NA	NA
1351289	1206769335	PD9774b	7	88239919	T	A	-	-	-	-	-	-	34	0	0	33	4	12.12121212	0	0	NA	0	0	NA	1.850213785	1	0	0.149786215	1	1	0.850213785	unphased	0.76385778	0.898430247	0.850213785	0	0.99875	0.00125	0	2	2.28E-05	1	1	1	NA	NA	NA	NA
1351289	1206769783	PD9774b	7	94985357	G	A	PON3	CCDS5639.1	r.?	-	-	downstream	22	0	0	48	6	12.5	0	0	NA	0	0	NA	1.850213785	1	0	0.149786215	1	1	0.850213785	unphased	0.787728336	0.926506192	0.850213785	0.00125	0.9975	0.00125	0	2	1.60E-07	1	1	1	NA	NA	NA	NA
1351289	1206769845	PD9774b	7	95959790	G	A	-	-	-	-	-	-	34	0	0	51	6	11.76470588	164	0	0	156	6	3.846153846	1.850213785	1	0	0.149786215	1	1	0.850213785	unphased	0.741391375	0.872005828	0.850213785	0.00125	0.99625	0.0025	0	2	2.32E-07	1	0.00014967	1	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206769938	PD9774b	7	97218849	C	A	-	-	-	-	-	-	33	0	0	63	7	11.11111111	0	0	NA	0	0	NA	1.850213785	1	0	0.149786215	1	1	0.850213785	unphased	0.700202965	0.823561059	0.850213785	0.0025	0.9975	0	0	2	3.38E-08	1	1	1	NA	NA	NA	NA
1351289	1206770257	PD9774b	7	100535926	C	A	-	-	-	-	-	-	44	0	0	52	6	11.53846154	0	0	NA	0	0	NA	1.850213785	1	0	0.149786215	1	1	0.850213785	unphased	0.727133849	0.855236485	0.850213785	0.00125	0.99625	0.0025	0	2	2.61E-07	1	1	1	NA	NA	NA	NA
1351289	1206770357	PD9774b	7	100696193	G	A	MUC17	CCDS34711.1	r.?	-	-	intronic	31	0	0	45	7	15.55555556	0	0	NA	0	0	NA	1.850213785	1	0	0.149786215	1	1	0.850213785	unphased	0.980284151	0.980284151	1	0.0025	0.9975	0	0	2	3.00E-09	1	1	1	NA	NA	NA	NA
1351289	1206770482	PD9774b	7	101835371	C	A	CUX1	CCDS5721.1	r.?	-	-	intronic	34	0	0	48	5	10.41666667	0	0	NA	0	0	NA	1.850213785	1	0	0.149786215	1	1	0.850213785	unphased	0.65644028	0.772088493	0.850213785	0	1	0	0	2	4.47E-06	1	1	1	NA	NA	NA	NA
1351289	1206770501	PD9774b	7	102016757	C	A	PRKRIP1	CCDS34714.1	r.863c>a	c.?	p.?	5'UTR variant	21	0	0	41	5	12.19512195	129	0	0	164	17	10.36585366	1.850213785	1	0	0.149786215	1	1	0.850213785	unphased	0.76851545	0.90390848	0.850213785	0.0025	0.99625	0.00125	0	2	2.02E-06	1	2.04E-17	1	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206770694	PD9774b	7	103248834	G	A	RELN	CCDS47680.1	r.?	-	-	intronic	48	0	0	73	12	16.43835616	0	0	NA	0	0	NA	1.850213785	1	0	0.149786215	1	1	0.850213785	unphased	1.035916716	1.035916716	1	0	1	0	0	2	3.39E-15	1	1	1	NA	NA	NA	NA
1351289	1206770780	PD9774b	7	104271852	C	A	LHFPL3	ENST00000424859	r.?	-	-	intronic	32	0	0	64	9	14.0625	0	0	NA	0	0	NA	1.850213785	1	0	0.149786215	1	1	0.850213785	unphased	0.886194378	1.042319466	0.850213785	0.00125	0.9975	0.00125	0	2	4.20E-11	1	1	1	NA	NA	NA	NA
1351289	1206770977	PD9774b	7	106408702	G	A	-	-	-	-	-	-	32	0	0	74	8	10.81081081	0	0	NA	0	0	NA	1.850213785	1	0	0.149786215	1	1	0.850213785	unphased	0.681278561	0.801302652	0.850213785	0.0025	0.9975	0	0	2	4.39E-09	1	1	1	NA	NA	NA	NA
1351289	1206770998	PD9774b	7	106618015	G	A	-	-	-	-	-	-	26	0	0	41	7	17.07317073	0	0	NA	0	0	NA	1.850213785	1	0	0.149786215	1	1	0.850213785	unphased	1.07592163	1.07592163	1	0.00125	0.99625	0.0025	0	2	1.51E-09	1	1	1	NA	NA	NA	NA
1351289	1206771159	PD9774b	7	108542292	C	A	-	-	-	-	-	-	28	0	0	57	7	12.28070175	0	0	NA	0	0	NA	1.850213785	1	0	0.149786215	1	1	0.850213785	unphased	0.773908541	0.910251697	0.850213785	0	1	0	0	2	1.66E-08	1	1	1	NA	NA	NA	NA
1351289	1206771192	PD9774b	7	108912138	G	A	-	-	-	-	-	-	56	0	0	57	5	8.771929825	0	0	NA	0	0	NA	1.850213785	1	0	0.149786215	1	1	0.850213785	unphased	0.552791815	0.650179784	0.850213785	0.0025	0.9975	0	0	2	1.05E-05	1	1	1	NA	NA	NA	NA
1351289	1206771251	PD9774b	7	109564389	G	A	-	-	-	-	-	-	38	0	0	56	10	17.85714286	0	0	NA	0	0	NA	1.850213785	1	0	0.149786215	1	1	0.850213785	unphased	1.125326194	1.125326194	1	0	1	0	0	2	2.82E-13	1	1	1	NA	NA	NA	NA
1351289	1206771298	PD9774b	7	110370541	C	A	IMMP2L	CCDS5753.1	r.?	-	-	intronic	34	0	0	56	7	12.5	0	0	NA	0	0	NA	1.850213785	1	0	0.149786215	1	1	0.850213785	unphased	0.787728336	0.926506192	0.850213785	0.00125	0.9975	0.00125	0	2	1.46E-08	1	1	1	NA	NA	NA	NA
1351289	1206771433	PD9774b	7	112371192	C	A	-	-	-	-	-	-	38	0	0	42	6	14.28571429	0	0	NA	0	0	NA	1.850213785	1	0	0.149786215	1	1	0.850213785	unphased	0.900260955	1.058864219	0.850213785	0.00125	0.99875	0	0	2	7.02E-08	1	1	1	NA	NA	NA	NA
1351289	1206771560	PD9774b	7	113994699	C	A	FOXP2	ENST00000324462	r.?	-	-	intronic	37	0	0	66	11	16.66666667	0	0	NA	0	0	NA	1.850213785	1	0	0.149786215	1	1	0.850213785	unphased	1.050304448	1.050304448	1	0	0.99875	0.00125	0	2	4.07E-14	1	1	1	NA	NA	NA	NA
1351289	1206771596	PD9774b	7	114542457	G	A	-	-	-	-	-	-	25	0	0	57	12	21.05263158	0	0	NA	0	0	NA	1.850213785	1	0	0.149786215	1	1	0.850213785	unphased	1.326700355	1.326700355	1	0	0.9975	0.0025	0	2	1.40E-16	1	1	1	NA	NA	NA	NA
1351289	1206771999	PD9774b	7	119787688	T	A	-	-	-	-	-	-	35	0	0	40	5	12.5	0	0	NA	0	0	NA	1.850213785	1	0	0.149786215	1	1	0.850213785	unphased	0.787728336	0.926506192	0.850213785	0.00625	0.9925	0.00125	0	2	1.78E-06	1	1	1	NA	NA	NA	NA
1351289	1206772014	PD9774b	7	120166217	T	A	KCND2	CCDS5776.1	r.?	-	-	intronic	27	0	0	61	5	8.196721311	0	0	NA	0	0	NA	1.850213785	1	0	0.149786215	1	1	0.850213785	unphased	0.516543171	0.607545044	0.850213785	0.0075	0.9925	0	0	2	1.47E-05	1	1	1	NA	NA	NA	NA
1351289	1206772203	PD9774b	7	122921447	T	A	-	-	-	-	-	-	38	0	0	70	5	7.142857143	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.389400922	0.389400922	1	0.03375	0.965	0.00125	0	2	2.89E-05	1	1	1	NA	NA	NA	NA
1351289	1206772383	PD9774b	7	125338297	G	A	-	-	-	-	-	-	43	0	0	58	6	10.34482759	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.667408231	0.667408231	1	0.00125	0.99875	0	0	2	5.06E-07	1	1	1	NA	NA	NA	NA
1351289	1206772454	PD9774b	7	125885758	G	A	-	-	-	-	-	-	20	0	0	31	4	12.90322581	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.832466181	0.832466181	1	0.005	0.995	0	0	2	1.77E-05	1	1	1	NA	NA	NA	NA
1351289	1206772498	PD9774b	7	126293177	G	A	GRM8	CCDS5794.1	r.?	-	-	intronic	42	0	0	62	5	8.064516129	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.520291363	0.520291363	1	0.005	0.995	0	0	2	1.60E-05	1	1	1	NA	NA	NA	NA
1351289	1206772577	PD9774b	7	127328981	G	A	SND1	CCDS34747.1	r.?	-	-	intronic	25	0	0	44	6	13.63636364	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.879765396	0.879765396	1	0.00375	0.995	0.00125	0	2	9.37E-08	1	1	1	NA	NA	NA	NA
1351289	1206772869	PD9774b	7	129847711	T	A	C7orf45	CCDS5816.1	r.12u>a	c.?	p.?	5'UTR variant	39	0	0	58	7	12.06896552	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.778642937	0.778642937	1	0.00125	0.9975	0.00125	0	2	1.88E-08	1	1	1	NA	NA	NA	NA
1351289	1206772944	PD9774b	7	130791461	T	A	MKLN1	ENST00000421797	r.?	-	-	upstream	37	0	0	41	6	14.63414634	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.944138474	0.944138474	1	0	0.99875	0.00125	0	2	6.05E-08	1	1	1	NA	NA	NA	NA
1351289	1206773174	PD9774b	7	133618471	G	A	EXOC4	CCDS5829.1	r.?	-	-	intronic	24	0	0	53	10	18.86792453	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.217285453	1.217285453	1	0	1	0	0	2	1.57E-13	1	1	1	NA	NA	NA	NA
1351289	1206773226	PD9774b	7	134251137	G	A	AKR1B15	CCDS47715.1	r.?	-	-	intronic	32	0	0	54	12	22.22222222	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.433691756	1.433691756	1	0	0.99125	0.00875	0	2	6.90E-17	1	1	1	NA	NA	NA	NA
1351289	1206773312	PD9774b	7	135355177	T	A	ENSG00000243317	ENST00000507606	r.?	-	-	intronic	36	0	0	48	5	10.41666667	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.672043011	0.672043011	1	0.0025	0.9975	0	0	2	4.47E-06	1	1	1	NA	NA	NA	NA
1351289	1206773426	PD9774b	7	136641831	C	A	CHRM2	CCDS5843.1	r.?	-	-	intronic	33	0	0	52	8	15.38461538	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.992555831	0.992555831	1	0.00125	0.99875	0	0	2	2.42E-10	1	1	1	NA	NA	NA	NA
1351289	1206773451	PD9774b	7	136888727	C	A	-	-	-	-	-	-	29	0	0	43	4	9.302325581	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.600150038	0.600150038	1	0.00375	0.99625	0	0	2	6.60E-05	1	1	1	NA	NA	NA	NA
1351289	1206773813	PD9774b	7	140696689	T	A	-	-	-	-	-	-	42	0	0	65	4	6.153846154	0	0	NA	0	0	NA	2.743963828	1	1	0.256036172	2	1	0.743963828	unphased	0.442804722	0.595196575	0.743963828	0.0075	0.99125	0.00125	0	2	0.000331785	1	1	1	NA	NA	NA	NA
1351289	1206773837	PD9774b	7	141085457	T	A	-	-	-	-	-	-	20	0	0	81	8	9.87654321	0	0	NA	0	0	NA	2.743963828	1	1	0.256036172	2	1	0.743963828	unphased	0.710674245	0.955253762	0.743963828	0	0.99875	0.00125	0	2	9.08E-09	1	1	1	NA	NA	NA	NA
1351289	1206773838	PD9774b	7	141100670	G	A	-	-	-	-	-	-	28	0	0	70	14	20	0	0	NA	0	0	NA	2.743963828	1	1	0.256036172	2	1	0.743963828	unphased	1.439115346	1.439115346	1	0	0.99375	0.00625	0	2	9.08E-19	1	1	1	NA	NA	NA	NA
1351289	1206773856	PD9774b	7	141412557	G	A	WEE2	CCDS43660.1	r.?	-	-	intronic	40	0	0	72	21	29.16666667	0	0	NA	0	0	NA	2.743963828	1	1	0.256036172	2	1	0.743963828	unphased	2.09870988	1.203413653	1.743963828	0	0.9975	0.0025	0	2	2.89E-31	1	1	1	NA	NA	NA	NA
1351289	1206773860	PD9774b	7	141455379	G	A	SSBP1	CCDS5866.1	r.?	-	-	intronic	25	0	0	59	12	20.33898305	0	0	NA	0	0	NA	2.743963828	1	1	0.256036172	2	1	0.743963828	unphased	1.463507132	1.463507132	1	0	0.9925	0.0075	0	2	2.20E-16	1	1	1	NA	NA	NA	NA
1351289	1206773895	PD9774b	7	141756462	C	A	MGAM	CCDS47727.1	r.?	-	-	intronic	32	0	0	64	11	17.1875	0	0	NA	0	0	NA	2.743963828	1	1	0.256036172	2	1	0.743963828	unphased	1.236739751	1.236739751	1	0	0.99875	0.00125	0	2	2.85E-14	1	1	1	NA	NA	NA	NA
1351289	1206774331	PD9774b	7	143818889	G	A	-	-	-	-	-	-	32	0	0	59	8	13.55932203	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.87479497	0.87479497	1	0.00125	0.99875	0	0	2	6.90E-10	1	1	1	NA	NA	NA	NA
1351289	1206774968	PD9774b	7	150319499	T	A	GIMAP6	CCDS34778.1	r.?	-	-	downstream	33	0	0	65	11	16.92307692	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.091811414	1.091811414	1	0	0.9975	0.0025	0	2	3.41E-14	1	1	1	NA	NA	NA	NA
1351289	1206774978	PD9774b	7	150554014	C	A	ABP1	CCDS43679.1	r.1040c>a	c.456C>A	p.Y152*	nonsense	37	0	0	57	5	8.771929825	6	0	0	4	3	75	2	1	1	1	NA	NA	NA	unphased	0.565930956	0.565930956	1	0.01	0.99	0	0	2	1.05E-05	1	4.98E-07	1	NA	NA	NA	NA
1351289	1206775078	PD9774b	7	151647085	C	A	-	-	-	-	-	-	32	0	0	54	8	14.81481481	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.955794504	0.955794504	1	0.00125	0.99875	0	0	2	3.31E-10	1	1	1	NA	NA	NA	NA
1351289	1206775766	PD9774b	7	153334433	T	A	-	-	-	-	-	-	33	0	0	46	8	17.39130435	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.122019635	1.122019635	1	0.00125	0.9975	0.00125	0	2	8.61E-11	1	1	1	NA	NA	NA	NA
1351289	1206775786	PD9774b	7	153527050	C	A	-	-	-	-	-	-	36	0	0	44	4	9.090909091	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.586510264	0.586510264	1	0.005	0.995	0	0	2	7.23E-05	1	1	1	NA	NA	NA	NA
1351289	1206775910	PD9774b	7	154623962	G	A	DPP6	ENST00000404039	r.?	-	-	intronic	23	0	0	49	5	10.20408163	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.658327847	0.658327847	1	0.00625	0.99375	0	0	2	4.96E-06	1	1	1	NA	NA	NA	NA
1351289	1206776087	PD9774b	7	155779223	C	A	-	-	-	-	-	-	39	0	0	57	4	7.01754386	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.452744765	0.452744765	1	0.015	0.985	0	0	2	0.000199821	1	1	1	NA	NA	NA	NA
1351289	1206776113	PD9774b	7	156031895	G	A	-	-	-	-	-	-	21	0	0	46	9	19.56521739	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.26227209	1.26227209	1	0	0.99375	0.00625	0	2	1.82E-12	1	1	1	NA	NA	NA	NA
1351289	1206776286	PD9774b	7	157496529	C	A	PTPRN2	CCDS5949.1	r.?	-	-	intronic	33	0	0	50	5	10	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.64516129	0.64516129	1	0.0025	0.9975	0	0	2	5.49E-06	1	1	1	NA	NA	NA	NA
1351289	1206776326	PD9774b	7	157686186	C	A	PTPRN2	CCDS5949.1	r.?	-	-	intronic	35	0	0	68	11	16.17647059	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.043643264	1.043643264	1	0	1	0	0	2	5.76E-14	1	1	1	NA	NA	NA	NA
1351289	1206776631	PD9774b	7	158372777	C	A	PTPRN2	CCDS5949.1	r.?	-	-	intronic	41	0	0	51	6	11.76470588	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.759013283	0.759013283	1	0.005	0.995	0	0	2	2.32E-07	1	1	1	NA	NA	NA	NA
1351289	1206776877	PD9774b	8	667316	T	A	ERICH1	CCDS5955.1	r.?	-	-	intronic	30	0	0	56	13	23.21428571	0	0	NA	0	0	NA	1.490411309	1	0	0.509588691	2	0	0.490411309	unphased	1.379398478	1.379398478	1	0	0.9925	0.0075	0	2	1.89E-18	1	1	1	NA	NA	NA	NA
1351289	1206776914	PD9774b	8	959791	G	A	ENSG00000232588	ENST00000448161	r.?	-	-	intronic	30	0	0	65	8	12.30769231	0	0	NA	0	0	NA	1.490411309	1	0	0.509588691	2	0	0.490411309	unphased	0.731326057	0.731326057	1	0.00625	0.99375	0	0	2	1.53E-09	1	1	1	NA	NA	NA	NA
1351289	1206776940	PD9774b	8	1197138	G	A	-	-	-	-	-	-	61	0	0	97	7	7.216494845	0	0	NA	0	0	NA	1.490411309	1	0	0.509588691	2	0	0.490411309	unphased	0.428805871	0.874380063	0.490411309	0.00375	0.995	0.00125	0	2	6.77E-07	1	1	1	NA	NA	NA	NA
1351289	1206777046	PD9774b	8	1612617	G	A	DLGAP2	CCDS47760.1	r.?	-	-	intronic	38	1	2.631578947	71	20	28.16901408	0	0	NA	0	0	NA	1.490411309	1	0	0.509588691	2	0	0.490411309	unphased	1.673809637	1.123052158	1.490411309	0	0.99875	0.00125	0	2	1.68E-29	0.173434892	1	1	NA	NA	NA	NA
1351289	1206777188	PD9774b	8	2280028	G	A	-	-	-	-	-	-	62	0	0	99	9	9.090909091	0	0	NA	0	0	NA	1.490411309	1	0	0.509588691	2	0	0.490411309	unphased	0.540184019	1.101491767	0.490411309	0.00125	0.99875	0	0	2	2.25E-09	1	1	1	NA	NA	NA	NA
1351289	1206777240	PD9774b	8	2387947	G	A	-	-	-	-	-	-	42	0	0	49	13	26.53061224	0	0	NA	0	0	NA	1.490411309	1	0	0.509588691	2	0	0.490411309	unphased	1.576455403	1.576455403	1	0	0.985	0.015	0	2	2.71E-19	1	1	1	NA	NA	NA	NA
1351289	1206777247	PD9774b	8	2539440	G	A	-	-	-	-	-	-	29	0	0	52	7	13.46153846	0	0	NA	0	0	NA	1.490411309	1	0	0.509588691	2	0	0.490411309	unphased	0.799887875	0.799887875	1	0.00125	0.99875	0	0	2	8.58E-09	1	1	1	NA	NA	NA	NA
1351289	1206777248	PD9774b	8	2542839	G	A	-	-	-	-	-	-	38	0	0	58	11	18.96551724	0	0	NA	0	0	NA	1.490411309	1	0	0.509588691	2	0	0.490411309	unphased	1.126935626	1.126935626	1	0	0.99875	0.00125	0	2	8.96E-15	1	1	1	NA	NA	NA	NA
1351289	1206777452	PD9774b	8	4705128	G	A	-	-	-	-	-	-	23	0	0	55	7	12.72727273	0	0	NA	0	0	NA	1.490411309	1	0	0.509588691	2	0	0.490411309	unphased	0.756257627	0.756257627	1	0.00125	0.99875	0	0	2	1.28E-08	1	1	1	NA	NA	NA	NA
1351289	1206777479	PD9774b	8	5061512	G	A	-	-	-	-	-	-	33	0	0	53	11	20.75471698	0	0	NA	0	0	NA	1.490411309	1	0	0.509588691	2	0	0.490411309	unphased	1.233250308	1.233250308	1	0.00125	0.9925	0.00625	0	2	3.07E-15	1	1	1	NA	NA	NA	NA
1351289	1206777506	PD9774b	8	5381873	T	A	-	-	-	-	-	-	31	0	0	61	13	21.31147541	0	0	NA	0	0	NA	1.490411309	1	0	0.509588691	2	0	0.490411309	unphased	1.266333029	1.266333029	1	0	0.99625	0.00375	0	2	6.41E-18	1	1	1	NA	NA	NA	NA
1351289	1206777676	PD9774b	8	6875488	G	A	DEFA3	CCDS5962.1	r.?	-	-	intronic	36	0	0	72	6	8.333333333	0	0	NA	0	0	NA	1.490411309	1	0	0.509588691	2	0	0.490411309	unphased	0.495168684	1.009700787	0.490411309	0.00125	0.99875	0	0	2	1.84E-06	1	1	1	NA	NA	NA	NA
1351289	1206777981	PD9774b	8	9325378	G	A	-	-	-	-	-	-	24	0	0	56	10	17.85714286	0	0	NA	0	0	NA	1.490411309	1	0	0.509588691	2	0	0.490411309	unphased	1.061075752	1.061075752	1	0.00125	0.99875	0	0	2	2.82E-13	1	1	1	NA	NA	NA	NA
1351289	1206778134	PD9774b	8	11256542	G	A	C8orf12	ENST00000284481	r.?	-	-	intronic	40	0	0	37	5	13.51351351	0	0	NA	0	0	NA	0.841880723	0	0	0.158119277	1	0	0.841880723	unphased	0.715336977	0.849689222	0.841880723	0.00625	0.9925	0.00125	0	2	1.19E-06	1	1	1	NA	NA	NA	NA
1351289	1206778164	PD9774b	8	11605521	G	A	GATA4	CCDS5983.1	r.?	-	-	intronic	36	0	0	38	6	15.78947368	0	0	NA	0	0	NA	0.841880723	0	0	0.158119277	1	0	0.841880723	unphased	0.835814783	0.992794775	0.841880723	0.00125	0.99875	0	0	2	3.76E-08	1	1	1	NA	NA	NA	NA
1351289	1206778580	PD9774b	8	15043696	G	A	SGCZ	CCDS5992.2	r.?	-	-	intronic	19	0	0	40	4	10	0	0	NA	0	0	NA	0.841880723	0	0	0.158119277	1	0	0.841880723	unphased	0.529349363	0.628770024	0.841880723	0.005	0.995	0	0	2	4.95E-05	1	1	1	NA	NA	NA	NA
1351289	1206778717	PD9774b	8	16801080	C	A	AC079193.1	ENST00000513892	r.?	-	-	intronic	34	0	0	41	7	17.07317073	0	0	NA	0	0	NA	0.841880723	0	0	0.158119277	1	0	0.841880723	unphased	0.903767205	1.073509797	0.841880723	0.0025	0.9975	0	0	2	1.51E-09	1	1	1	NA	NA	NA	NA
1351289	1206778768	PD9774b	8	17492488	T	A	PDGFRL	CCDS6003.1	r.?	-	-	intronic	24	0	0	41	4	9.756097561	0	0	NA	0	0	NA	0.841880723	0	0	0.158119277	1	0	0.841880723	unphased	0.516438403	0.61343417	0.841880723	0.005	0.995	0	0	2	5.46E-05	1	1	1	NA	NA	NA	NA
1351289	1206778787	PD9774b	8	17735585	C	A	FGL1	CCDS6004.1	r.?	-	-	intronic	32	0	0	32	4	12.5	0	0	NA	0	0	NA	0.841880723	0	0	0.158119277	1	0	0.841880723	unphased	0.661686703	0.78596253	0.841880723	0	1	0	0	2	2.01E-05	1	1	1	NA	NA	NA	NA
1351289	1206778978	PD9774b	8	20015601	C	A	SLC18A1	CCDS6013.1	r.?	-	-	intronic	26	0	0	52	5	9.615384615	0	0	NA	0	0	NA	0.841880723	0	0	0.158119277	1	0	0.841880723	unphased	0.508989772	0.604586562	0.841880723	0.0025	0.9975	0	0	2	6.68E-06	1	1	1	NA	NA	NA	NA
1351289	1206779525	PD9774b	8	27750097	C	A	SCARA5	CCDS6064.1	r.?	-	-	intronic	23	0	0	35	9	25.71428571	0	0	NA	0	0	NA	0.841880723	0	0	0.158119277	1	0	0.841880723	unphased	1.361184075	1.361184075	1	0	0.9975	0.0025	0	2	1.23E-13	1	1	1	NA	NA	NA	NA
1351289	1206779642	PD9774b	8	29222557	T	A	-	-	-	-	-	-	32	0	0	37	11	29.72972973	0	0	NA	0	0	NA	0.841880723	0	0	0.158119277	1	0	0.841880723	unphased	1.573741348	1.573741348	1	0	0.98625	0.01375	0	2	3.70E-17	1	1	1	NA	NA	NA	NA
1351289	1206779753	PD9774b	8	30353571	T	A	RBPMS	CCDS6077.1	r.?	-	-	intronic	28	0	0	35	8	22.85714286	0	0	NA	0	0	NA	0.841880723	0	0	0.158119277	1	0	0.841880723	unphased	1.2099414	1.2099414	1	0	0.99875	0.00125	0	2	8.15E-12	1	1	1	NA	NA	NA	NA
1351289	1206779930	PD9774b	8	32351894	C	A	NRG1	CCDS47836.1	r.?	-	-	intronic	34	0	0	56	7	12.5	0	0	NA	0	0	NA	0.841880723	0	0	0.158119277	1	0	0.841880723	unphased	0.661686703	0.78596253	0.841880723	0.0025	0.9975	0	0	2	1.46E-08	1	1	1	NA	NA	NA	NA
1351289	1206779956	PD9774b	8	32721964	C	A	-	-	-	-	-	-	33	0	0	37	8	21.62162162	0	0	NA	0	0	NA	0.841880723	0	0	0.158119277	1	0	0.841880723	unphased	1.144539163	1.144539163	1	0	0.99625	0.00375	0	2	1.33E-11	1	1	1	NA	NA	NA	NA
1351289	1206779962	PD9774b	8	32923141	G	A	-	-	-	-	-	-	34	0	0	60	13	21.66666667	0	0	NA	0	0	NA	0.841880723	0	0	0.158119277	1	0	0.841880723	unphased	1.146923619	1.146923619	1	0	1	0	0	2	5.07E-18	1	1	1	NA	NA	NA	NA
1351289	1206779999	PD9774b	8	33437883	G	A	-	-	-	-	-	-	29	0	0	30	4	13.33333333	0	0	NA	0	0	NA	0.841880723	0	0	0.158119277	1	0	0.841880723	unphased	0.70579915	0.838360032	0.841880723	0.00125	0.99875	0	0	2	1.54E-05	1	1	1	NA	NA	NA	NA
1351289	1206780310	PD9774b	8	38429658	G	A	-	-	-	-	-	-	23	0	0	38	8	21.05263158	0	0	NA	0	0	NA	0.841880723	0	0	0.158119277	1	0	0.841880723	unphased	1.114419711	1.114419711	1	0	1	0	0	2	1.67E-11	1	1	1	NA	NA	NA	NA
1351289	1206780386	PD9774b	8	39467391	T	A	ADAM18	CCDS6113.1	r.?	-	-	intronic	47	0	0	46	7	15.2173913	0	0	NA	0	0	NA	0.841880723	0	0	0.158119277	1	0	0.841880723	unphased	0.805531639	0.95682395	0.841880723	0.00375	0.99375	0.0025	0	2	3.53E-09	1	1	1	NA	NA	NA	NA
1351289	1206780414	PD9774b	8	39827248	G	A	IDO2	ENST00000389060	r.?	-	-	intronic	21	0	0	46	11	23.91304348	0	0	NA	0	0	NA	0.841880723	0	0	0.158119277	1	0	0.841880723	unphased	1.265835432	1.265835432	1	0	0.99625	0.00375	0	2	5.55E-16	1	1	1	NA	NA	NA	NA
1351289	1206780551	PD9774b	8	41240969	T	A	-	-	-	-	-	-	40	0	0	57	8	14.03508772	0	0	NA	0	0	NA	0.841880723	0	0	0.158119277	1	0	0.841880723	unphased	0.742946474	0.882484244	0.841880723	0	1	0	0	2	5.19E-10	1	1	1	NA	NA	NA	NA
1351289	1206781736	PD9774b	8	49880950	C	A	-	-	-	-	-	-	31	0	0	43	9	20.93023256	0	0	NA	0	0	NA	0.841880723	0	0	0.158119277	1	0	0.841880723	unphased	1.107940527	1.107940527	1	0.00125	0.9975	0.00125	0	2	9.45E-13	1	1	1	NA	NA	NA	NA
1351289	1206781763	PD9774b	8	50280914	T	A	-	-	-	-	-	-	36	0	0	44	12	27.27272727	0	0	NA	0	0	NA	0.841880723	0	0	0.158119277	1	0	0.841880723	unphased	1.44368008	1.44368008	1	0	0.985	0.015	0	2	4.44E-18	1	1	1	NA	NA	NA	NA
1351289	1206781813	PD9774b	8	50835034	C	A	-	-	-	-	-	-	33	0	0	51	8	15.68627451	0	0	NA	0	0	NA	0.841880723	0	0	0.158119277	1	0	0.841880723	unphased	0.830351941	0.98630592	0.841880723	0.00125	0.99875	0	0	2	2.05E-10	1	1	1	NA	NA	NA	NA
1351289	1206781976	PD9774b	8	52863215	G	A	ENSG00000228801	ENST00000423716	r.?	-	-	downstream	40	0	0	53	12	22.64150943	0	0	NA	0	0	NA	0.841880723	0	0	0.158119277	1	0	0.841880723	unphased	1.198526859	1.198526859	1	0	1	0	0	2	5.39E-17	1	1	1	NA	NA	NA	NA
1351289	1206782018	PD9774b	8	53391157	T	A	-	-	-	-	-	-	35	0	0	46	11	23.91304348	0	0	NA	0	0	NA	0.841880723	0	0	0.158119277	1	0	0.841880723	unphased	1.265835432	1.265835432	1	0	0.995	0.005	0	2	5.55E-16	1	1	1	NA	NA	NA	NA
1351289	1206782052	PD9774b	8	54208286	G	A	-	-	-	-	-	-	36	0	0	40	9	22.5	0	0	NA	0	0	NA	0.841880723	0	0	0.158119277	1	0	0.841880723	unphased	1.191036066	1.191036066	1	0	1	0	0	2	4.64E-13	1	1	1	NA	NA	NA	NA
1351289	1206782096	PD9774b	8	54758879	T	A	ATP6V1H	CCDS6153.1	r.?	-	-	upstream	40	0	0	44	11	25	0	0	NA	0	0	NA	0.841880723	0	0	0.158119277	1	0	0.841880723	unphased	1.323373407	1.323373407	1	0	0.99625	0.00375	0	2	3.22E-16	1	1	1	NA	NA	NA	NA
1351289	1206782181	PD9774b	8	56227271	C	A	XKR4	CCDS34893.1	r.?	-	-	intronic	35	0	0	57	7	12.28070175	0	0	NA	0	0	NA	0.841880723	0	0	0.158119277	1	0	0.841880723	unphased	0.650078165	0.772173714	0.841880723	0.00125	0.9975	0.00125	0	2	1.66E-08	1	1	1	NA	NA	NA	NA
1351289	1206782337	PD9774b	8	58795792	C	A	-	-	-	-	-	-	30	0	0	51	8	15.68627451	0	0	NA	0	0	NA	0.841880723	0	0	0.158119277	1	0	0.841880723	unphased	0.830351941	0.98630592	0.841880723	0.00125	0.99875	0	0	2	2.05E-10	1	1	1	NA	NA	NA	NA
1351289	1206782416	PD9774b	8	60584713	C	A	-	-	-	-	-	-	38	0	0	51	10	19.60784314	0	0	NA	0	0	NA	0.841880723	0	0	0.158119277	1	0	0.841880723	unphased	1.037939927	1.037939927	1	0.00125	0.99875	0	0	2	1.04E-13	1	1	1	NA	NA	NA	NA
1351289	1206782512	PD9774b	8	61928404	C	A	-	-	-	-	-	-	34	0	0	47	6	12.76595745	0	0	NA	0	0	NA	0.841880723	0	0	0.158119277	1	0	0.841880723	unphased	0.675765144	0.802685137	0.841880723	0.00125	0.99875	0	0	2	1.41E-07	1	1	1	NA	NA	NA	NA
1351289	1206782550	PD9774b	8	62583373	G	A	ASPH	CCDS34898.1	r.?	-	-	intronic	23	0	0	57	7	12.28070175	0	0	NA	0	0	NA	0.841880723	0	0	0.158119277	1	0	0.841880723	unphased	0.650078165	0.772173714	0.841880723	0.0025	0.9975	0	0	2	1.66E-08	1	1	1	NA	NA	NA	NA
1351289	1206782565	PD9774b	8	62833031	C	A	-	-	-	-	-	-	36	0	0	60	5	8.333333333	0	0	NA	0	0	NA	0.841880723	0	0	0.158119277	1	0	0.841880723	unphased	0.441124469	0.52397502	0.841880723	0.0125	0.9875	0	0	2	1.36E-05	1	1	1	NA	NA	NA	NA
1351289	1206782665	PD9774b	8	64150214	G	A	-	-	-	-	-	-	34	0	0	47	5	10.63829787	0	0	NA	0	0	NA	0.841880723	0	0	0.158119277	1	0	0.841880723	unphased	0.56313762	0.668904281	0.841880723	0.00625	0.99375	0	0	2	4.02E-06	1	1	1	NA	NA	NA	NA
1351289	1206782817	PD9774b	8	67100968	G	A	-	-	-	-	-	-	27	0	0	47	8	17.0212766	0	0	NA	0	0	NA	0.841880723	0	0	0.158119277	1	0	0.841880723	unphased	0.901020192	1.070246849	0.841880723	0.00125	0.99875	0	0	2	1.03E-10	1	1	1	NA	NA	NA	NA
1351289	1206782931	PD9774b	8	68760088	G	A	-	-	-	-	-	-	28	0	0	40	8	20	0	0	NA	0	0	NA	0.841880723	0	0	0.158119277	1	0	0.841880723	unphased	1.058698725	1.058698725	1	0	0.99875	0.00125	0	2	2.61E-11	1	1	1	NA	NA	NA	NA
1351289	1206783029	PD9774b	8	70648533	C	A	SLCO5A1	CCDS6205.1	r.?	-	-	intronic	30	0	0	41	6	14.63414634	0	0	NA	0	0	NA	0.841880723	0	0	0.158119277	1	0	0.841880723	unphased	0.774657604	0.920151255	0.841880723	0	0.99875	0.00125	0	2	6.05E-08	1	1	1	NA	NA	NA	NA
1351289	1206783191	PD9774b	8	73182619	T	A	-	-	-	-	-	-	40	0	0	40	9	22.5	0	0	NA	0	0	NA	0.841880723	0	0	0.158119277	1	0	0.841880723	unphased	1.191036066	1.191036066	1	0	0.9975	0.0025	0	2	4.64E-13	1	1	1	NA	NA	NA	NA
1351289	1206783499	PD9774b	8	78132068	C	A	-	-	-	-	-	-	41	0	0	56	9	16.07142857	0	0	NA	0	0	NA	0.841880723	0	0	0.158119277	1	0	0.841880723	unphased	0.850740047	1.010523253	0.841880723	0	0.9975	0.0025	0	2	1.20E-11	1	1	1	NA	NA	NA	NA
1351289	1206783660	PD9774b	8	80610988	G	A	-	-	-	-	-	-	45	0	0	52	10	19.23076923	0	0	NA	0	0	NA	1.315636663	1	0	0.684363337	2	0	0.315636663	unphased	1.109086455	1.109086455	1	0	0.99875	0.00125	0	2	1.28E-13	1	1	1	NA	NA	NA	NA
1351289	1206784041	PD9774b	8	86470070	C	A	-	-	-	-	-	-	36	0	0	63	5	7.936507937	0	0	NA	0	0	NA	1.315636663	1	0	0.684363337	2	0	0.315636663	unphased	0.45771822	1.450142754	0.315636663	0.00125	0.99375	0.005	0	2	1.73E-05	1	1	1	NA	NA	NA	NA
1351289	1206784222	PD9774b	8	87215750	C	A	-	-	-	-	-	-	30	0	0	51	6	11.76470588	0	0	NA	0	0	NA	1.315636663	1	0	0.684363337	2	0	0.315636663	unphased	0.678499949	0.678499949	1	0.00625	0.99375	0	0	2	2.32E-07	1	1	1	NA	NA	NA	NA
1351289	1206784326	PD9774b	8	88370524	T	A	CNBD1	ENST00000319712	r.?	-	-	intronic	36	0	0	81	4	4.938271605	0	0	NA	0	0	NA	3.486636081	3	0	0.513363919	4	0	0.486636081	unphased	0.392012296	0.805555344	0.486636081	0.0025	0.99625	0.00125	0	2	0.000765256	1	1	1	NA	NA	NA	NA
1351289	1206784356	PD9774b	8	88632132	C	A	-	-	-	-	-	-	33	0	0	77	8	10.38961039	0	0	NA	0	0	NA	3.486636081	3	0	0.513363919	4	0	0.486636081	unphased	0.824753141	0.824753141	1	0.00125	0.99875	0	0	2	6.05E-09	1	1	1	NA	NA	NA	NA
1351289	1206784453	PD9774b	8	89595150	C	A	-	-	-	-	-	-	35	0	0	68	8	11.76470588	0	0	NA	0	0	NA	3.486636081	3	0	0.513363919	4	0	0.486636081	unphased	0.933911645	0.933911645	1	0.00125	0.99875	0	0	2	2.21E-09	1	1	1	NA	NA	NA	NA
1351289	1206784629	PD9774b	8	91252923	G	A	-	-	-	-	-	-	47	0	0	62	11	17.74193548	0	0	NA	0	0	NA	3.486636081	3	0	0.513363919	4	0	0.486636081	unphased	1.408399013	1.408399013	1	0.00125	0.99625	0.0025	0	2	1.96E-14	1	1	1	NA	NA	NA	NA
1351289	1206784660	PD9774b	8	91440778	G	A	-	-	-	-	-	-	33	0	0	81	7	8.641975309	0	0	NA	0	0	NA	3.486636081	3	0	0.513363919	4	0	0.486636081	unphased	0.686021517	0.686021517	1	0.0025	0.9975	0	0	2	1.97E-07	1	1	1	NA	NA	NA	NA
1351289	1206784701	PD9774b	8	91938264	G	A	NECAB1	CCDS47889.1	r.?	-	-	intronic	24	0	0	65	29	44.61538462	0	0	NA	0	0	NA	3.486636081	3	0	0.513363919	4	0	0.486636081	unphased	3.541680316	1.015787204	3.486636081	0	1	0	0	2	3.92E-49	1	1	1	NA	NA	NA	NA
1351289	1206784783	PD9774b	8	92579952	T	A	-	-	-	-	-	-	39	0	0	63	4	6.349206349	0	0	NA	0	0	NA	3.486636081	3	0	0.513363919	4	0	0.486636081	unphased	0.504015809	1.035714014	0.486636081	0.00125	0.9975	0.00125	0	2	0.000294233	1	1	1	NA	NA	NA	NA
1351289	1206784809	PD9774b	8	93001902	T	A	RUNX1T1	CCDS47891.1	r.?	-	-	intronic	35	0	0	74	12	16.21621622	0	0	NA	0	0	NA	3.486636081	3	0	0.513363919	4	0	0.486636081	unphased	1.287283619	1.287283619	1	0	0.99625	0.00375	0	2	4.02E-15	1	1	1	NA	NA	NA	NA
1351289	1206784855	PD9774b	8	93388221	T	A	-	-	-	-	-	-	24	0	0	69	5	7.246376812	0	0	NA	0	0	NA	3.486636081	3	0	0.513363919	4	0	0.486636081	unphased	0.575235434	1.182064907	0.486636081	0	0.99875	0.00125	0	2	2.69E-05	1	1	1	NA	NA	NA	NA
1351289	1206785033	PD9774b	8	95416599	G	A	RAD54B	CCDS6262.1	r.?	-	-	intronic	36	0	0	78	6	7.692307692	0	0	NA	0	0	NA	3.486636081	3	0	0.513363919	4	0	0.486636081	unphased	0.610634537	1.254807363	0.486636081	0.0025	0.995	0.0025	0	2	2.95E-06	1	1	1	NA	NA	NA	NA
1351289	1206785111	PD9774b	8	95817527	G	A	-	-	-	-	-	-	28	0	0	85	10	11.76470588	0	0	NA	0	0	NA	4.520177791	4	0	0.479822209	5	0	0.520177791	unphased	1.055504788	1.055504788	1	0	1	0	0	2	2.17E-11	1	1	1	NA	NA	NA	NA
1351289	1206785137	PD9774b	8	95936072	T	A	TP53INP1	CCDS47899.1	r.?	-	-	downstream	23	0	0	67	11	16.41791045	0	0	NA	0	0	NA	4.520177791	4	0	0.479822209	5	0	0.520177791	unphased	1.472980562	1.472980562	1	0	0.9925	0.0075	0	2	4.85E-14	1	1	1	NA	NA	NA	NA
1351289	1206785318	PD9774b	8	97243563	G	A	UQCRB	CCDS6269.1	r.?	-	-	intronic	41	0	0	96	17	17.70833333	0	0	NA	0	0	NA	4.520177791	4	0	0.479822209	5	0	0.520177791	unphased	1.588754602	1.045111046	1.520177791	0	1	0	0	2	1.64E-21	1	1	1	NA	NA	NA	NA
1351289	1206785353	PD9774b	8	97534600	T	A	SDC2	CCDS6272.1	r.?	-	-	intronic	35	0	0	87	4	4.597701149	0	0	NA	0	0	NA	4.520177791	4	0	0.479822209	5	0	0.520177791	unphased	0.412496124	0.792990648	0.520177791	0.00125	0.99875	0	0	2	0.00099983	1	1	1	NA	NA	NA	NA
1351289	1206785411	PD9774b	8	98017912	G	A	ENSG00000104324	CCDS6273.1	r.?	-	-	intronic	39	0	0	77	9	11.68831169	0	0	NA	0	0	NA	4.520177791	4	0	0.479822209	5	0	0.520177791	unphased	1.04865086	1.04865086	1	0	0.99875	0.00125	0	2	2.32E-10	1	1	1	NA	NA	NA	NA
1351289	1206785438	PD9774b	8	98347873	T	A	-	-	-	-	-	-	32	0	0	82	4	4.87804878	0	0	NA	0	0	NA	4.520177791	4	0	0.479822209	5	0	0.520177791	unphased	0.437648327	0.841343737	0.520177791	0.00125	0.99625	0.0025	0	2	0.000801325	1	1	1	NA	NA	NA	NA
1351289	1206785614	PD9774b	8	99649050	C	A	ENSG00000104375	CCDS47900.1	r.?	-	-	intronic	32	0	0	78	15	19.23076923	0	0	NA	0	0	NA	4.520177791	4	0	0.479822209	5	0	0.520177791	unphased	1.725344364	1.134962222	1.520177791	0	1	0	0	2	9.92E-20	1	1	1	NA	NA	NA	NA
1351289	1206785816	PD9774b	8	101274557	G	A	RNF19A	CCDS6286.1	r.?	-	-	intronic	38	0	0	75	8	10.66666667	0	0	NA	0	0	NA	4.520177791	4	0	0.479822209	5	0	0.520177791	unphased	0.956991007	0.956991007	1	0.0025	0.9975	0	0	2	4.89E-09	1	1	1	NA	NA	NA	NA
1351289	1206785992	PD9774b	8	102754357	T	A	NCALD	CCDS6292.1	r.?	-	-	intronic	26	0	0	59	7	11.86440678	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	0.884089666	0.884089666	1	0.0025	0.9975	0	0	2	2.12E-08	1	1	1	NA	NA	NA	NA
1351289	1206786254	PD9774b	8	105361465	C	A	TM7SF4	CCDS6301.1	r.736c>a	c.685C>A	p.L229I	missense	33	0	0	67	10	14.92537313	206	0	0	194	14	7.216494845	3	3	0	1	NA	NA	NA	unphased	1.11218103	1.11218103	1	0	1	0	0	2	1.87E-12	1	2.00E-12	1	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206786538	PD9774b	8	108237070	T	A	-	-	-	-	-	-	34	0	0	80	13	16.25	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	1.210887097	1.210887097	1	0	0.99875	0.00125	0	2	2.82E-16	1	1	1	NA	NA	NA	NA
1351289	1206786577	PD9774b	8	108518642	T	A	-	-	-	-	-	-	42	0	0	54	7	12.96296296	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	0.965949821	0.965949821	1	0	1	0	0	2	1.13E-08	1	1	1	NA	NA	NA	NA
1351289	1206786712	PD9774b	8	110075917	T	A	-	-	-	-	-	-	25	0	0	94	12	12.76595745	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	0.951269732	0.951269732	1	0	1	0	0	2	7.98E-14	1	1	1	NA	NA	NA	NA
1351289	1206786856	PD9774b	8	111885027	T	A	-	-	-	-	-	-	37	0	0	76	6	7.894736842	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	0.588285229	0.588285229	1	0.00875	0.99125	0	0	2	2.53E-06	1	1	1	NA	NA	NA	NA
1351289	1206786864	PD9774b	8	111955563	G	A	-	-	-	-	-	-	26	0	0	66	10	15.15151515	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	1.129032258	1.129032258	1	0.0025	0.9975	0	0	2	1.60E-12	1	1	1	NA	NA	NA	NA
1351289	1206786895	PD9774b	8	112346274	G	A	-	-	-	-	-	-	44	0	0	71	8	11.26760563	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	0.839618355	0.839618355	1	0	0.99875	0.00125	0	2	3.14E-09	1	1	1	NA	NA	NA	NA
1351289	1206786914	PD9774b	8	112675007	G	A	-	-	-	-	-	-	30	0	0	63	7	11.11111111	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	0.827956989	0.827956989	1	0.00375	0.99625	0	0	2	3.38E-08	1	1	1	NA	NA	NA	NA
1351289	1206787061	PD9774b	8	114241764	G	A	CSMD3	CCDS6315.1	r.?	-	-	intronic	24	0	0	68	7	10.29411765	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	0.767077799	0.767077799	1	0.00375	0.99625	0	0	2	5.80E-08	1	1	1	NA	NA	NA	NA
1351289	1206787103	PD9774b	8	114559249	C	A	-	-	-	-	-	-	33	0	0	49	5	10.20408163	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	0.760368664	0.760368664	1	0	0.99875	0.00125	0	2	4.96E-06	1	1	1	NA	NA	NA	NA
1351289	1206787120	PD9774b	8	114722163	C	A	-	-	-	-	-	-	35	0	0	72	11	15.27777778	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	1.13844086	1.13844086	1	0	0.99875	0.00125	0	2	1.12E-13	1	1	1	NA	NA	NA	NA
1351289	1206787237	PD9774b	8	116107184	G	A	-	-	-	-	-	-	41	0	0	72	12	16.66666667	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	1.241935484	1.241935484	1	0.00125	0.99875	0	0	2	2.84E-15	1	1	1	NA	NA	NA	NA
1351289	1206787340	PD9774b	8	117098832	G	A	AF130342.1	ENST00000505156	r.?	-	-	intronic	43	0	0	67	5	7.462686567	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	0.556090515	0.556090515	1	0.0125	0.9875	0	0	2	2.33E-05	1	1	1	NA	NA	NA	NA
1351289	1206787497	PD9774b	8	118643045	C	A	-	-	-	-	-	-	27	0	0	68	11	16.17647059	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	1.20540797	1.20540797	1	0	0.99875	0.00125	0	2	5.76E-14	1	1	1	NA	NA	NA	NA
1351289	1206787819	PD9774b	8	122095138	C	A	-	-	-	-	-	-	23	0	0	68	12	17.64705882	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	1.314990512	1.314990512	1	0	0.9975	0.0025	0	2	1.37E-15	1	1	1	NA	NA	NA	NA
1351289	1206787913	PD9774b	8	123194494	C	A	-	-	-	-	-	-	49	0	0	83	5	6.024096386	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	0.448892344	0.448892344	1	0.0125	0.9875	0	0	2	6.56E-05	1	1	1	NA	NA	NA	NA
1351289	1206787931	PD9774b	8	123377506	T	A	-	-	-	-	-	-	31	0	0	55	7	12.72727273	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	0.948387097	0.948387097	1	0.0025	0.9975	0	0	2	1.28E-08	1	1	1	NA	NA	NA	NA
1351289	1206788076	PD9774b	8	124707395	C	A	ANXA13	CCDS34939.1	r.?	-	-	intronic	32	0	0	59	10	16.94915254	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	1.262985238	1.262985238	1	0	0.995	0.005	0	2	4.91E-13	1	1	1	NA	NA	NA	NA
1351289	1206788191	PD9774b	8	125855106	T	A	ENSG00000235517	ENST00000422573	r.?	-	-	intronic	27	0	0	58	11	18.96551724	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	1.41323693	1.41323693	1	0	0.99625	0.00375	0	2	8.96E-15	1	1	1	NA	NA	NA	NA
1351289	1206788209	PD9774b	8	126014992	T	A	SQLE	CCDS47918.1	r.?	-	-	intronic	31	0	0	72	13	18.05555556	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	1.345430108	1.345430108	1	0	0.995	0.005	0	2	6.58E-17	1	1	1	NA	NA	NA	NA
1351289	1206788255	PD9774b	8	126611392	T	A	-	-	-	-	-	-	29	0	0	61	5	8.196721311	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	0.610787943	0.610787943	1	0.01	0.99	0	0	2	1.47E-05	1	1	1	NA	NA	NA	NA
1351289	1206788256	PD9774b	8	126668883	G	A	-	-	-	-	-	-	35	0	0	57	13	22.80701754	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	1.699490662	0.849745331	2	0.00125	0.99875	0	0	2	2.44E-18	1	1	1	NA	NA	NA	NA
1351289	1206788402	PD9774b	8	128511964	G	A	-	-	-	-	-	-	33	0	0	53	7	13.20754717	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	0.984175289	0.984175289	1	0.00125	0.99875	0	0	2	9.85E-09	1	1	1	NA	NA	NA	NA
1351289	1206788541	PD9774b	8	129921580	C	A	-	-	-	-	-	-	34	0	0	61	21	34.42622951	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	2.56530936	0.85510312	3	0	1	0	0	2	4.80E-33	1	1	1	NA	NA	NA	NA
1351289	1206788766	PD9774b	8	132371510	G	A	-	-	-	-	-	-	23	0	0	64	6	9.375	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	0.69858871	0.69858871	1	0.005	0.995	0	0	2	9.14E-07	1	1	1	NA	NA	NA	NA
1351289	1206788786	PD9774b	8	132613982	C	A	-	-	-	-	-	-	36	0	0	64	4	6.25	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	0.465725806	0.465725806	1	0.005	0.995	0	0	2	0.000312605	1	1	1	NA	NA	NA	NA
1351289	1206789159	PD9774b	8	136136102	G	A	-	-	-	-	-	-	33	0	0	48	22	45.83333333	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	3.415322581	1.13844086	3	0	0.99875	0.00125	0	2	5.76E-38	1	1	1	NA	NA	NA	NA
1351289	1206789200	PD9774b	8	136698497	G	A	-	-	-	-	-	-	33	0	0	66	10	15.15151515	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	1.129032258	1.129032258	1	0.00125	0.9975	0.00125	0	2	1.60E-12	1	1	1	NA	NA	NA	NA
1351289	1206789213	PD9774b	8	136841414	G	A	-	-	-	-	-	-	26	0	0	57	8	14.03508772	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	1.045840407	1.045840407	1	0.00125	0.9975	0.00125	0	2	5.19E-10	1	1	1	NA	NA	NA	NA
1351289	1206789301	PD9774b	8	137738960	C	A	-	-	-	-	-	-	42	0	0	83	6	7.228915663	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	0.538670812	0.538670812	1	0.00875	0.99125	0	0	2	4.24E-06	1	1	1	NA	NA	NA	NA
1351289	1206789365	PD9774b	8	138233956	C	A	-	-	-	-	-	-	27	0	0	80	12	15	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	1.117741935	1.117741935	1	0	1	0	0	2	1.07E-14	1	1	1	NA	NA	NA	NA
1351289	1206789423	PD9774b	8	138564286	T	A	-	-	-	-	-	-	35	0	0	71	8	11.26760563	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	0.839618355	0.839618355	1	0.00125	0.99875	0	0	2	3.14E-09	1	1	1	NA	NA	NA	NA
1351289	1206789500	PD9774b	8	138928852	C	A	-	-	-	-	-	-	36	0	0	57	6	10.52631579	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	0.784380306	0.784380306	1	0	1	0	0	2	4.56E-07	1	1	1	NA	NA	NA	NA
1351289	1206789590	PD9774b	8	139547057	G	A	-	-	-	-	-	-	43	0	0	69	7	10.14492754	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	0.755960729	0.755960729	1	0.0025	0.99625	0.00125	0	2	6.43E-08	1	1	1	NA	NA	NA	NA
1351289	1206789617	PD9774b	8	139816271	C	A	COL22A1	CCDS6376.1	r.?	-	-	intronic	30	0	0	58	10	17.24137931	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	1.284760845	1.284760845	1	0.0025	0.9975	0	0	2	4.10E-13	1	1	1	NA	NA	NA	NA
1351289	1206789790	PD9774b	8	141243959	G	A	TRAPPC9	CCDS34946.1	r.?	-	-	intronic	18	0	0	53	10	18.86792453	0	0	NA	0	0	NA	4	4	0	1	NA	NA	NA	unphased	1.594643944	1.594643944	1	0	0.99	0.01	0	2	1.57E-13	1	1	1	NA	NA	NA	NA
1351289	1206789892	PD9774b	8	142089143	C	A	-	-	-	-	-	-	38	0	0	92	23	25	0	0	NA	0	0	NA	4	4	0	1	NA	NA	NA	unphased	2.112903226	1.056451613	2	0	1	0	0	2	2.41E-32	1	1	1	NA	NA	NA	NA
1351289	1206790038	PD9774b	8	143032379	C	A	-	-	-	-	-	-	33	0	0	65	12	18.46153846	0	0	NA	0	0	NA	4	4	0	1	NA	NA	NA	unphased	1.560297767	1.560297767	1	0	0.99125	0.00875	0	2	7.70E-16	1	1	1	NA	NA	NA	NA
1351289	1206790044	PD9774b	8	143077684	C	A	-	-	-	-	-	-	32	0	0	89	9	10.11235955	0	0	NA	0	0	NA	4	4	0	1	NA	NA	NA	unphased	0.854657485	0.854657485	1	0.00125	0.99875	0	0	2	8.66E-10	1	1	1	NA	NA	NA	NA
1351289	1206790199	PD9774b	8	143914894	T	A	GML	CCDS6391.1	r.?	-	-	upstream	27	0	0	62	18	29.03225806	0	0	NA	0	0	NA	4	4	0	1	NA	NA	NA	unphased	2.453694069	0.817898023	3	0.0025	0.9975	0	0	2	5.72E-27	1	1	1	NA	NA	NA	NA
1351289	1206790281	PD9774b	8	144184207	G	A	-	-	-	-	-	-	35	0	0	69	24	34.7826087	128	0	0	63	19	30.15873016	4	4	0	1	NA	NA	NA	unphased	2.939691445	0.979897148	3	0	1	0	0	2	1.11E-37	1	9.48E-29	1	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206790282	PD9774b	8	144184636	G	A	-	-	-	-	-	-	28	0	0	69	37	53.62318841	0	0	NA	0	0	NA	4	4	0	1	NA	NA	NA	unphased	4.53202431	1.133006078	4	0	1	0	0	2	2.94E-66	1	1	1	NA	NA	NA	NA
1351289	1206790435	PD9774b	8	144845029	T	A	-	-	-	-	-	-	22	0	0	74	14	18.91891892	0	0	NA	0	0	NA	4	4	0	1	NA	NA	NA	unphased	1.598953793	0.799476896	2	0.0025	0.9975	0	0	2	2.10E-18	1	1	1	NA	NA	NA	NA
1351289	1206791458	PD9774b	9	9259794	C	A	PTPRD	CCDS43786.1	r.?	-	-	intronic	37	0	0	62	6	9.677419355	0	0	NA	0	0	NA	4	2	2	1	NA	NA	NA	unphased	0.817898023	0.817898023	1	0	1	0	0	2	7.56E-07	1	1	1	NA	NA	NA	NA
1351289	1206791498	PD9774b	9	9655092	C	A	PTPRD	CCDS43786.1	r.?	-	-	intronic	35	0	0	56	7	12.5	0	0	NA	0	0	NA	4	2	2	1	NA	NA	NA	unphased	1.056451613	1.056451613	1	0.00125	0.99875	0	0	2	1.46E-08	1	1	1	NA	NA	NA	NA
1351289	1206791517	PD9774b	9	9876336	C	A	PTPRD	CCDS43786.1	r.?	-	-	intronic	37	0	0	68	4	5.882352941	0	0	NA	0	0	NA	4	2	2	1	NA	NA	NA	unphased	0.4971537	0.4971537	1	0.00625	0.99375	0	0	2	0.000394372	1	1	1	NA	NA	NA	NA
1351289	1206791604	PD9774b	9	10645294	G	A	-	-	-	-	-	-	45	0	0	75	7	9.333333333	0	0	NA	0	0	NA	4	2	2	1	NA	NA	NA	unphased	0.788817204	0.788817204	1	0.0025	0.9975	0	0	2	1.15E-07	1	1	1	NA	NA	NA	NA
1351289	1206791688	PD9774b	9	11376594	C	A	-	-	-	-	-	-	53	0	0	79	17	21.51898734	0	0	NA	0	0	NA	4	2	2	1	NA	NA	NA	unphased	1.818701511	0.909350755	2	0	1	0	0	2	4.55E-23	1	1	1	NA	NA	NA	NA
1351289	1206791699	PD9774b	9	11509865	G	A	-	-	-	-	-	-	36	0	0	68	13	19.11764706	0	0	NA	0	0	NA	4	2	2	1	NA	NA	NA	unphased	1.615749526	0.807874763	2	0.00125	0.99875	0	0	2	2.96E-17	1	1	1	NA	NA	NA	NA
1351289	1206791731	PD9774b	9	11707384	G	A	-	-	-	-	-	-	20	0	0	64	16	25	0	0	NA	0	0	NA	4	2	2	1	NA	NA	NA	unphased	2.112903226	1.056451613	2	0	0.99875	0.00125	0	2	5.94E-23	1	1	1	NA	NA	NA	NA
1351289	1206791820	PD9774b	9	12269447	G	A	-	-	-	-	-	-	30	0	0	79	21	26.58227848	0	0	NA	0	0	NA	4	2	2	1	NA	NA	NA	unphased	2.246631278	1.123315639	2	0	1	0	0	2	2.69E-30	1	1	1	NA	NA	NA	NA
1351289	1206792328	PD9774b	9	16789648	C	A	BNC2	CCDS6482.2	r.?	-	-	intronic	39	0	0	67	6	8.955223881	0	0	NA	0	0	NA	2.748462482	1	1	0.251537518	2	1	0.748462482	unphased	0.64478287	0.861476542	0.748462482	0.00375	0.99625	0	0	2	1.20E-06	1	1	1	NA	NA	NA	NA
1351289	1206792510	PD9774b	9	18753174	C	A	ADAMTSL1	CCDS47954.1	r.?	-	-	intronic	31	0	0	66	8	12.12121212	0	0	NA	0	0	NA	2.748462482	1	1	0.251537518	2	1	0.748462482	unphased	0.87273641	0.87273641	1	0	1	0	0	2	1.73E-09	1	1	1	NA	NA	NA	NA
1351289	1206792522	PD9774b	9	18934525	T	A	FAM154A	CCDS6487.1	r.?	-	-	intronic	28	0	0	64	12	18.75	0	0	NA	0	0	NA	2.748462482	1	1	0.251537518	2	1	0.748462482	unphased	1.350014135	1.350014135	1	0	0.99	0.01	0	2	6.30E-16	1	1	1	NA	NA	NA	NA
1351289	1206792813	PD9774b	9	21950181	G	A	-	-	-	-	-	-	25	0	0	72	6	8.333333333	0	0	NA	0	0	NA	2.748462482	1	1	0.251537518	2	1	0.748462482	unphased	0.600006282	0.801651782	0.748462482	0.0025	0.9975	0	0	2	1.84E-06	1	1	1	NA	NA	NA	NA
1351289	1206792889	PD9774b	9	22537546	C	A	-	-	-	-	-	-	35	0	0	68	8	11.76470588	0	0	NA	0	0	NA	2.748462482	1	1	0.251537518	2	1	0.748462482	unphased	0.847067692	1.131743692	0.748462482	0.00125	0.99875	0	0	2	2.21E-09	1	1	1	NA	NA	NA	NA
1351289	1206792890	PD9774b	9	22540848	T	A	-	-	-	-	-	-	30	0	0	49	10	20.40816327	0	0	NA	0	0	NA	2.748462482	1	1	0.251537518	2	1	0.748462482	unphased	1.46940314	1.46940314	1	0	0.9975	0.0025	0	2	6.72E-14	1	1	1	NA	NA	NA	NA
1351289	1206792895	PD9774b	9	22591561	T	A	-	-	-	-	-	-	44	0	0	70	17	24.28571429	0	0	NA	0	0	NA	2.748462482	1	1	0.251537518	2	1	0.748462482	unphased	1.748589736	1.000072781	1.748462482	0	0.99875	0.00125	0	2	4.68E-24	1	1	1	NA	NA	NA	NA
1351289	1206792935	PD9774b	9	22958957	G	A	-	-	-	-	-	-	33	0	0	68	9	13.23529412	0	0	NA	0	0	NA	2.748462482	1	1	0.251537518	2	1	0.748462482	unphased	0.952951154	0.952951154	1	0	1	0	0	2	7.38E-11	1	1	1	NA	NA	NA	NA
1351289	1206792962	PD9774b	9	23324867	G	A	-	-	-	-	-	-	27	0	0	52	11	21.15384615	0	0	NA	0	0	NA	2.748462482	1	1	0.251537518	2	1	0.748462482	unphased	1.52309287	1.52309287	1	0.00125	0.99125	0.0075	0	2	2.44E-15	1	1	1	NA	NA	NA	NA
1351289	1206793125	PD9774b	9	25826234	T	A	-	-	-	-	-	-	35	0	0	56	6	10.71428571	0	0	NA	0	0	NA	2.748462482	1	1	0.251537518	2	1	0.748462482	unphased	0.771436648	1.030695148	0.748462482	0.00375	0.99625	0	0	2	4.09E-07	1	1	1	NA	NA	NA	NA
1351289	1206793466	PD9774b	9	29458543	T	A	-	-	-	-	-	-	28	0	0	40	6	15	0	0	NA	0	0	NA	2.748462482	1	1	0.251537518	2	1	0.748462482	unphased	1.080011308	1.080011308	1	0	0.99875	0.00125	0	2	5.18E-08	1	1	1	NA	NA	NA	NA
1351289	1206793475	PD9774b	9	29489341	C	A	-	-	-	-	-	-	29	0	0	69	13	18.84057971	0	0	NA	0	0	NA	2.748462482	1	1	0.251537518	2	1	0.748462482	unphased	1.356535942	1.356535942	1	0	0.99625	0.00375	0	2	3.64E-17	1	1	1	NA	NA	NA	NA
1351289	1206793743	PD9774b	9	32723137	C	A	-	-	-	-	-	-	30	0	0	50	9	18	0	0	NA	0	0	NA	2.748462482	1	1	0.251537518	2	1	0.748462482	unphased	1.296013569	1.296013569	1	0	0.9975	0.0025	0	2	4.07E-12	1	1	1	NA	NA	NA	NA
1351289	1206794176	PD9774b	9	35453669	C	A	-	-	-	-	-	-	42	0	0	59	11	18.6440678	0	0	NA	0	0	NA	2.748462482	1	1	0.251537518	2	1	0.748462482	unphased	1.342386936	1.342386936	1	0	1	0	0	2	1.10E-14	1	1	1	NA	NA	NA	NA
1351289	1206794240	PD9774b	9	36018342	C	A	-	-	-	-	-	-	37	0	0	65	12	18.46153846	0	0	NA	0	0	NA	2.748462482	1	1	0.251537518	2	1	0.748462482	unphased	1.329244686	1.329244686	1	0	0.9975	0.0025	0	2	7.70E-16	1	1	1	NA	NA	NA	NA
1351289	1206794291	PD9774b	9	36564758	C	A	-	-	-	-	-	-	39	0	0	51	4	7.843137255	0	0	NA	0	0	NA	2.748462482	1	1	0.251537518	2	1	0.748462482	unphased	0.564711795	0.754495795	0.748462482	0.00125	0.99875	0	0	2	0.000129466	1	1	1	NA	NA	NA	NA
1351289	1206795235	PD9774b	9	45630937	T	A	-	-	-	-	-	-	14	0	0	30	14	46.66666667	0	0	NA	0	0	NA	2.748462482	1	1	0.251537518	2	1	0.748462482	unphased	3.36003518	1.921708481	1.748462482	0	0.86875	0.13	0.00125	2	8.24E-25	1	1	1	NA	NA	NA	NA
1351289	1206803798	PD9774b	9	76921422	G	A	-	-	-	-	-	-	28	0	0	54	9	16.66666667	0	0	NA	0	0	NA	0.778367287	0	0	0.221632713	1	0	0.778367287	unphased	0.871663365	1.119861253	0.778367287	0.00125	0.99875	0	0	2	8.48E-12	1	1	1	NA	NA	NA	NA
1351289	1206803882	PD9774b	9	78102453	C	A	-	-	-	-	-	-	37	0	0	39	7	17.94871795	0	0	NA	0	0	NA	0.778367287	0	0	0.221632713	1	0	0.778367287	unphased	0.938714393	0.938714393	1	0.00125	0.9975	0.00125	0	2	1.04E-09	1	1	1	NA	NA	NA	NA
1351289	1206804018	PD9774b	9	80076734	C	A	GNA14	CCDS6657.1	r.?	-	-	intronic	32	0	0	37	5	13.51351351	0	0	NA	0	0	NA	0.778367287	0	0	0.221632713	1	0	0.778367287	unphased	0.70675408	0.907995611	0.778367287	0	1	0	0	2	1.19E-06	1	1	1	NA	NA	NA	NA
1351289	1206804712	PD9774b	9	89416285	C	A	-	-	-	-	-	-	34	0	0	45	5	11.11111111	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.716845878	0.716845878	1	0.0025	0.9975	0	0	2	3.23E-06	1	1	1	NA	NA	NA	NA
1351289	1206804805	PD9774b	9	90461633	G	A	ENSG00000214888	ENST00000399186	r.?	-	-	intronic	37	0	0	65	8	12.30769231	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.794044665	0.794044665	1	0.005	0.995	0	0	2	1.53E-09	1	1	1	NA	NA	NA	NA
1351289	1206804840	PD9774b	9	90775930	G	A	-	-	-	-	-	-	28	0	0	42	7	16.66666667	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.075268817	1.075268817	1	0.00125	0.99875	0	0	2	1.81E-09	1	1	1	NA	NA	NA	NA
1351289	1206804932	PD9774b	9	92145474	C	A	-	-	-	-	-	-	28	0	0	56	9	16.07142857	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.036866359	1.036866359	1	0	1	0	0	2	1.20E-11	1	1	1	NA	NA	NA	NA
1351289	1206805043	PD9774b	9	93761250	C	A	-	-	-	-	-	-	39	0	0	58	5	8.620689655	0	0	NA	0	0	NA	2.412438486	1	1	0.587561514	2	1	0.412438486	unphased	0.591728568	0.591728568	1	0.0025	0.9975	0	0	2	1.15E-05	1	1	1	NA	NA	NA	NA
1351289	1206805216	PD9774b	9	95444809	G	A	-	-	-	-	-	-	27	0	0	50	11	22	0	0	NA	0	0	NA	2.412438486	1	1	0.587561514	2	1	0.412438486	unphased	1.510091306	1.510091306	1	0	0.9875	0.0125	0	2	1.52E-15	1	1	1	NA	NA	NA	NA
1351289	1206805242	PD9774b	9	95686773	G	A	-	-	-	-	-	-	27	0	0	54	13	24.07407407	0	0	NA	0	0	NA	2.412438486	1	1	0.587561514	2	1	0.412438486	unphased	1.652456816	1.169931882	1.412438486	0	0.99875	0.00125	0	2	1.12E-18	1	1	1	NA	NA	NA	NA
1351289	1206805546	PD9774b	9	98621421	C	A	-	-	-	-	-	-	33	0	0	57	9	15.78947368	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.018675722	1.018675722	1	0	1	0	0	2	1.42E-11	1	1	1	NA	NA	NA	NA
1351289	1206805757	PD9774b	9	101200858	T	A	GABBR2	CCDS6736.1	r.?	-	-	intronic	30	0	0	45	9	20	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.290322581	1.290322581	1	0	0.9975	0.0025	0	2	1.47E-12	1	1	1	NA	NA	NA	NA
1351289	1206805791	PD9774b	9	101614104	T	A	GALNT12	CCDS6737.1	r.?	-	-	downstream	35	0	0	66	14	21.21212121	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.368523949	1.368523949	1	0	0.995	0.005	0	2	3.71E-19	1	1	1	NA	NA	NA	NA
1351289	1206805912	PD9774b	9	103257761	G	A	TMEFF1	CCDS6750.1	r.?	-	-	intronic	34	0	0	45	7	15.55555556	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.003584229	1.003584229	1	0.00125	0.9975	0.00125	0	2	3.00E-09	1	1	1	NA	NA	NA	NA
1351289	1206805947	PD9774b	9	103798081	T	A	ENSG00000148123	CCDS6751.1	r.?	-	-	intronic	36	0	0	48	4	8.333333333	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.537634409	0.537634409	1	0.00625	0.99375	0	0	2	0.000102016	1	1	1	NA	NA	NA	NA
1351289	1206805957	PD9774b	9	103975475	C	A	ENSG00000148123	CCDS6751.1	r.?	-	-	intronic	39	0	0	46	10	21.73913043	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.402524544	1.402524544	1	0	0.995	0.005	0	2	3.38E-14	1	1	1	NA	NA	NA	NA
1351289	1206805972	PD9774b	9	104281687	T	A	C9orf125	CCDS6757.1	r.?	-	-	intronic	38	0	0	49	11	22.44897959	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.448321264	1.448321264	1	0	0.9875	0.0125	0	2	1.19E-15	1	1	1	NA	NA	NA	NA
1351289	1206806046	PD9774b	9	105211276	T	A	-	-	-	-	-	-	28	0	0	61	14	22.95081967	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.480698043	1.480698043	1	0	0.99125	0.00875	0	2	1.10E-19	1	1	1	NA	NA	NA	NA
1351289	1206806063	PD9774b	9	105480452	C	A	-	-	-	-	-	-	33	0	0	66	12	18.18181818	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.173020528	1.173020528	1	0	0.99625	0.00375	0	2	9.36E-16	1	1	1	NA	NA	NA	NA
1351289	1206806109	PD9774b	9	105893771	G	A	-	-	-	-	-	-	37	0	0	59	7	11.86440678	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.765445599	0.765445599	1	0.00125	0.99875	0	0	2	2.12E-08	1	1	1	NA	NA	NA	NA
1351289	1206806160	PD9774b	9	106636740	C	A	-	-	-	-	-	-	27	0	0	62	15	24.19354839	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.560874089	1.560874089	1	0	0.9825	0.0175	0	2	2.28E-21	1	1	1	NA	NA	NA	NA
1351289	1206806163	PD9774b	9	106689668	T	A	-	-	-	-	-	-	38	0	0	76	7	9.210526316	1	0	0	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.594227504	0.594227504	1	0.005	0.995	0	0	2	1.26E-07	1	1	1	NA	NA	NA	NA
1351289	1206806208	PD9774b	9	107351785	T	A	-	-	-	-	-	-	38	0	0	70	10	14.28571429	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.921658986	0.921658986	1	0.00125	0.99875	0	0	2	2.95E-12	1	1	1	NA	NA	NA	NA
1351289	1206806306	PD9774b	9	108114266	G	A	SLC44A1	CCDS6763.1	r.?	-	-	intronic	23	0	0	57	7	12.28070175	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.792303339	0.792303339	1	0.0025	0.9975	0	0	2	1.66E-08	1	1	1	NA	NA	NA	NA
1351289	1206806454	PD9774b	9	110342988	G	A	-	-	-	-	-	-	31	0	0	49	10	20.40816327	0	0	NA	0	0	NA	1.288878388	1	0	0.711121612	2	0	0.288878388	unphased	1.171528835	1.171528835	1	0	0.99875	0.00125	0	2	6.72E-14	1	1	1	NA	NA	NA	NA
1351289	1206806676	PD9774b	9	112968696	C	A	C9orf152	CCDS35102.2	r.?	-	-	intronic	37	0	0	48	13	27.08333333	209	0	0	81	19	23.45679012	1.288878388	1	0	0.711121612	2	0	0.288878388	unphased	1.554716391	1.554716391	1	0	0.98375	0.01625	0	2	2.00E-19	1	2.15E-26	1	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206806680	PD9774b	9	112980429	C	A	-	-	-	-	-	-	44	0	0	49	11	22.44897959	0	0	NA	0	0	NA	1.288878388	1	0	0.711121612	2	0	0.288878388	unphased	1.288681719	1.288681719	1	0	0.9975	0.0025	0	2	1.19E-15	1	1	1	NA	NA	NA	NA
1351289	1206807005	PD9774b	9	116555629	C	A	-	-	-	-	-	-	29	0	0	50	16	32	219	1	0.456621005	113	15	13.27433628	1.288878388	1	0	0.711121612	2	0	0.288878388	unphased	1.836957213	1.425237035	1.288878388	0	0.99	0.01	0	2	6.40E-25	1	3.49E-17	0.666377999	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206807151	PD9774b	9	118301046	C	A	-	-	-	-	-	-	35	0	0	60	10	16.66666667	0	0	NA	0	0	NA	1.288878388	1	0	0.711121612	2	0	0.288878388	unphased	0.956748549	0.956748549	1	0	0.99875	0.00125	0	2	5.86E-13	1	1	1	NA	NA	NA	NA
1351289	1206807311	PD9774b	9	120326016	C	A	-	-	-	-	-	-	41	0	0	43	9	20.93023256	0	0	NA	0	0	NA	1.288878388	1	0	0.711121612	2	0	0.288878388	unphased	1.201498177	1.201498177	1	0	0.9975	0.0025	0	2	9.45E-13	1	1	1	NA	NA	NA	NA
1351289	1206807312	PD9774b	9	120326017	T	A	-	-	-	-	-	-	39	0	0	43	9	20.93023256	0	0	NA	0	0	NA	1.288878388	1	0	0.711121612	2	0	0.288878388	unphased	1.201498177	1.201498177	1	0.00125	0.9975	0.00125	0	2	9.45E-13	1	1	1	NA	NA	NA	NA
1351289	1206807489	PD9774b	9	122480427	G	A	-	-	-	-	-	-	30	0	0	60	13	21.66666667	0	0	NA	0	0	NA	1.288878388	1	0	0.711121612	2	0	0.288878388	unphased	1.243773113	1.243773113	1	0	0.99875	0.00125	0	2	5.07E-18	1	1	1	NA	NA	NA	NA
1351289	1206807540	PD9774b	9	123038579	G	A	-	-	-	-	-	-	45	0	0	58	13	22.4137931	0	0	NA	0	0	NA	1.288878388	1	0	0.711121612	2	0	0.288878388	unphased	1.286661841	1.286661841	1	0	0.9975	0.0025	0	2	3.12E-18	1	1	1	NA	NA	NA	NA
1351289	1206807743	PD9774b	9	125674935	T	A	ZBTB26	CCDS6847.1	r.?	-	-	downstream	31	0	0	57	16	28.07017544	0	0	NA	0	0	NA	1.288878388	1	0	0.711121612	2	0	0.288878388	unphased	1.611365977	1.250207926	1.288878388	0	0.99875	0.00125	0	2	7.28E-24	1	1	1	NA	NA	NA	NA
1351289	1206807965	PD9774b	9	128136596	C	A	-	-	-	-	-	-	25	0	0	56	5	8.928571429	0	0	NA	0	0	NA	1.288878388	1	0	0.711121612	2	0	0.288878388	unphased	0.512543865	0.512543865	1	0.01	0.98875	0.00125	0	2	9.65E-06	1	1	1	NA	NA	NA	NA
1351289	1206808297	PD9774b	9	131959354	T	A	-	-	-	-	-	-	34	0	0	50	4	8	0	0	NA	0	0	NA	1.288878388	1	0	0.711121612	2	0	0.288878388	unphased	0.459239303	0.459239303	1	0.00625	0.9925	0.00125	0	2	0.000119787	1	1	1	NA	NA	NA	NA
1351289	1206808618	PD9774b	9	134827573	G	A	MED27	CCDS6945.1	r.?	-	-	intronic	31	0	0	59	15	25.42372881	0	0	NA	0	0	NA	1.288878388	1	0	0.711121612	2	0	0.288878388	unphased	1.459446939	1.459446939	1	0	0.98375	0.01625	0	2	9.90E-22	1	1	1	NA	NA	NA	NA
1351289	1206808651	PD9774b	9	135271485	G	A	TTF1	CCDS6948.1	r.?	-	-	intronic	38	0	0	44	11	25	0	0	NA	0	0	NA	1.288878388	1	0	0.711121612	2	0	0.288878388	unphased	1.435122823	1.435122823	1	0	0.9925	0.0075	0	2	3.22E-16	1	1	1	NA	NA	NA	NA
1351289	1206808821	PD9774b	9	136992571	C	A	-	-	-	-	-	-	23	0	0	49	13	26.53061224	0	0	NA	0	0	NA	1.288878388	1	0	0.711121612	2	0	0.288878388	unphased	1.522987486	1.522987486	1	0	0.9875	0.0125	0	2	2.71E-19	1	1	1	NA	NA	NA	NA
1351289	1206808905	PD9774b	9	137933980	G	A	-	-	-	-	-	-	21	0	0	43	10	23.25581395	0	0	NA	0	0	NA	1.288878388	1	0	0.711121612	2	0	0.288878388	unphased	1.334997975	1.334997975	1	0	0.99875	0.00125	0	2	1.61E-14	1	1	1	NA	NA	NA	NA
1351289	1206809107	PD9774b	9	140014067	G	A	DPP7	CCDS7030.1	r.?	-	-	upstream	23	0	0	41	9	21.95121951	0	0	NA	0	0	NA	1.288878388	1	0	0.711121612	2	0	0.288878388	unphased	1.260107845	1.260107845	1	0	0.99625	0.00375	0	2	5.92E-13	1	1	1	NA	NA	NA	NA
1351289	1206809169	PD9774b	9	140292673	G	A	EXD3	CCDS48066.1	r.?	-	-	intronic	26	0	0	56	13	23.21428571	0	0	NA	0	0	NA	1.288878388	1	0	0.711121612	2	0	0.288878388	unphased	1.33261405	1.33261405	1	0	0.995	0.005	0	2	1.89E-18	1	1	1	NA	NA	NA	NA
1351289	1206809588	PD9774b	X	4368552	C	A	-	-	-	-	-	-	30	0	0	39	5	12.82051282	0	0	NA	0	0	NA	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	1.56E-06	1	1	1	NA	NA	NA	NA
1351289	1206809613	PD9774b	X	4738269	C	A	-	-	-	-	-	-	44	0	0	42	7	16.66666667	267	0	0	495	73	14.74747475	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	1.81E-09	1	5.59E-81	1	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206809659	PD9774b	X	5165252	C	A	-	-	-	-	-	-	34	0	0	48	7	14.58333333	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.795026882	0.795026882	1	0	1	0	0	2	4.81E-09	1	1	1	NA	NA	NA	NA
1351289	1206809833	PD9774b	X	7462381	T	A	-	-	-	-	-	-	32	0	0	37	4	10.81081081	0	0	NA	1	0	0	1	1	0	1	NA	NA	NA	unphased	0.589363557	0.589363557	1	0.00375	0.99625	0	0	2	3.62E-05	1	1	1	NA	NA	NA	NA
1351289	1206809844	PD9774b	X	7833306	G	A	-	-	-	-	-	-	35	0	0	55	11	20	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.090322581	1.090322581	1	0	0.99875	0.00125	0	2	4.77E-15	1	1	1	NA	NA	NA	NA
1351289	1206810158	PD9774b	X	11297515	C	A	ARHGAP6	CCDS14140.1	r.?	-	-	intronic	28	0	0	48	10	20.83333333	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.135752688	1.135752688	1	0	1	0	0	2	5.37E-14	1	1	1	NA	NA	NA	NA
1351289	1206810188	PD9774b	X	12005129	G	A	-	-	-	-	-	-	32	0	0	54	16	29.62962963	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.615292712	1.615292712	1	0	0.96375	0.03625	0	2	2.69E-24	1	1	1	NA	NA	NA	NA
1351289	1206810202	PD9774b	X	12329268	G	A	FRMPD4	CCDS35201.1	r.?	-	-	intronic	26	0	0	46	8	17.39130435	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.948106592	0.948106592	1	0	1	0	0	2	8.61E-11	1	1	1	NA	NA	NA	NA
1351289	1206810301	PD9774b	X	13735815	G	A	TRAPPC2P1	CCDS48082.1	r.?	-	-	intronic	30	0	0	42	7	16.66666667	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.908602151	0.908602151	1	0.00125	0.99875	0	0	2	1.81E-09	1	1	1	NA	NA	NA	NA
1351289	1206810471	PD9774b	X	16391456	G	A	-	-	-	-	-	-	48	0	0	50	6	12	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.654193548	0.654193548	1	0.0025	0.9975	0	0	2	2.06E-07	1	1	1	NA	NA	NA	NA
1351289	1206810577	PD9774b	X	18105121	G	A	-	-	-	-	-	-	43	0	0	54	6	11.11111111	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.605734767	0.605734767	1	0.005	0.995	0	0	2	3.29E-07	1	1	1	NA	NA	NA	NA
1351289	1206810585	PD9774b	X	18166155	T	A	-	-	-	-	-	-	44	0	0	38	5	13.15789474	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.717317487	0.717317487	1	0.00375	0.99625	0	0	2	1.37E-06	1	1	1	NA	NA	NA	NA
1351289	1206810660	PD9774b	X	19159560	T	A	-	-	-	-	-	-	21	0	0	59	7	11.86440678	0	0	NA	0	0	NA	1.637835256	1	0	0.362164744	1	1	0.637835256	unphased	0.7224769	1.13270142	0.637835256	0.00125	0.99875	0	0	2	2.12E-08	1	1	1	NA	NA	NA	NA
1351289	1206810747	PD9774b	X	20407083	C	A	-	-	-	-	-	-	35	0	0	38	5	13.15789474	0	0	NA	0	0	NA	1.637835256	1	0	0.362164744	1	1	0.637835256	unphased	0.801243179	0.801243179	1	0.00125	0.99875	0	0	2	1.37E-06	1	1	1	NA	NA	NA	NA
1351289	1206810748	PD9774b	X	20407084	C	A	-	-	-	-	-	-	36	0	0	38	5	13.15789474	0	0	NA	0	0	NA	1.637835256	1	0	0.362164744	1	1	0.637835256	unphased	0.801243179	0.801243179	1	0	1	0	0	2	1.37E-06	1	1	1	NA	NA	NA	NA
1351289	1206810973	PD9774b	X	24065453	G	A	-	-	-	-	-	-	36	0	0	40	7	17.5	0	0	NA	0	0	NA	1.637835256	1	0	0.362164744	1	1	0.637835256	unphased	1.065653428	1.065653428	1	0.00125	0.9975	0.00125	0	2	1.26E-09	1	1	1	NA	NA	NA	NA
1351289	1206811001	PD9774b	X	24273025	T	A	-	-	-	-	-	-	37	0	0	48	8	16.66666667	0	0	NA	0	0	NA	1.637835256	1	0	0.362164744	1	1	0.637835256	unphased	1.014908027	1.014908027	1	0	1	0	0	2	1.23E-10	1	1	1	NA	NA	NA	NA
1351289	1206811104	PD9774b	X	25895214	C	A	-	-	-	-	-	-	17	0	0	31	4	12.90322581	0	0	NA	0	0	NA	1.637835256	1	0	0.362164744	1	1	0.637835256	unphased	0.785735246	0.785735246	1	0.00375	0.99625	0	0	2	1.77E-05	1	1	1	NA	NA	NA	NA
1351289	1206811141	PD9774b	X	26437332	T	A	-	-	-	-	-	-	36	0	0	49	4	8.163265306	0	0	NA	0	0	NA	1.637835256	1	0	0.362164744	1	1	0.637835256	unphased	0.497097809	0.779351414	0.637835256	0.00125	0.99875	0	0	2	0.000110643	1	1	1	NA	NA	NA	NA
1351289	1206811180	PD9774b	X	27091118	G	A	-	-	-	-	-	-	38	0	0	58	7	12.06896552	0	0	NA	0	0	NA	1.637835256	1	0	0.362164744	1	1	0.637835256	unphased	0.734933399	1.152230755	0.637835256	0.00125	0.99625	0.0025	0	2	1.88E-08	1	1	1	NA	NA	NA	NA
1351289	1206811183	PD9774b	X	27146917	T	A	-	-	-	-	-	-	31	0	0	53	6	11.32075472	0	0	NA	0	0	NA	1.637835256	1	0	0.362164744	1	1	0.637835256	unphased	0.68937149	1.080798659	0.637835256	0.00125	0.99875	0	0	2	2.93E-07	1	1	1	NA	NA	NA	NA
1351289	1206811184	PD9774b	X	27152792	G	A	-	-	-	-	-	-	39	0	0	53	5	9.433962264	0	0	NA	0	0	NA	1.637835256	1	0	0.362164744	1	1	0.637835256	unphased	0.574476241	0.900665549	0.637835256	0.0025	0.995	0.0025	0	2	7.34E-06	1	1	1	NA	NA	NA	NA
1351289	1206811246	PD9774b	X	28061532	T	A	-	-	-	-	-	-	30	0	0	49	4	8.163265306	0	0	NA	0	0	NA	1.637835256	1	0	0.362164744	1	1	0.637835256	unphased	0.497097809	0.779351414	0.637835256	0.00125	0.99875	0	0	2	0.000110643	1	1	1	NA	NA	NA	NA
1351289	1206811266	PD9774b	X	28627941	C	A	IL1RAPL1	CCDS14218.1	r.?	-	-	intronic	37	0	0	39	5	12.82051282	0	0	NA	0	0	NA	1.637835256	1	0	0.362164744	1	1	0.637835256	unphased	0.780698482	0.780698482	1	0.00375	0.995	0.00125	0	2	1.56E-06	1	1	1	NA	NA	NA	NA
1351289	1206811307	PD9774b	X	29182235	T	A	IL1RAPL1	CCDS14218.1	r.?	-	-	intronic	40	0	0	53	5	9.433962264	0	0	NA	0	0	NA	1.637835256	1	0	0.362164744	1	1	0.637835256	unphased	0.574476241	0.900665549	0.637835256	0.0025	0.9975	0	0	2	7.34E-06	1	1	1	NA	NA	NA	NA
1351289	1206811579	PD9774b	X	32940877	C	A	DMD	CCDS14233.1	r.?	-	-	intronic	23	0	0	36	4	11.11111111	0	0	NA	0	0	NA	1.415960809	1	0	0.584039191	1	1	0.415960809	unphased	0.651952635	0.651952635	1	0.00375	0.99625	0	0	2	3.24E-05	1	1	1	NA	NA	NA	NA
1351289	1206811669	PD9774b	X	34537184	G	A	-	-	-	-	-	-	34	0	0	52	5	9.615384615	0	0	NA	0	0	NA	1.415960809	1	0	0.584039191	1	1	0.415960809	unphased	0.56418978	1.356353214	0.415960809	0.00125	0.99625	0.0025	0	2	6.68E-06	1	1	1	NA	NA	NA	NA
1351289	1206811754	PD9774b	X	36355218	G	A	CXorf30	ENST00000378653	r.?	-	-	intronic	43	0	0	54	5	9.259259259	0	0	NA	0	0	NA	1.415960809	1	0	0.584039191	1	1	0.415960809	unphased	0.543293862	1.30611791	0.415960809	0.00125	0.995	0.00375	0	2	8.06E-06	1	1	1	NA	NA	NA	NA
1351289	1206812098	PD9774b	X	42435749	T	A	-	-	-	-	-	-	31	0	0	49	4	8.163265306	0	0	NA	1	0	0	1.415960809	1	0	0.584039191	1	1	0.415960809	unphased	0.478985609	1.151516198	0.415960809	0.00125	0.99375	0.005	0	2	0.000110643	1	1	1	NA	NA	NA	NA
1351289	1206812169	PD9774b	X	43826677	C	A	NDP	CCDS14262.1	r.?	-	-	intronic	37	0	0	39	5	12.82051282	0	0	NA	0	0	NA	1.415960809	1	0	0.584039191	1	1	0.415960809	unphased	0.75225304	0.75225304	1	0.00125	0.99875	0	0	2	1.56E-06	1	1	1	NA	NA	NA	NA
1351289	1206812240	PD9774b	X	44863993	G	A	KDM6A	CCDS14265.1	r.?	-	-	intronic	26	0	0	65	6	9.230769231	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.595533499	0.595533499	1	0.005	0.995	0	0	2	1.00E-06	1	1	1	NA	NA	NA	NA
1351289	1206812306	PD9774b	X	46078146	C	A	-	-	-	-	-	-	40	0	0	49	5	10.20408163	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.658327847	0.658327847	1	0.005	0.995	0	0	2	4.96E-06	1	1	1	NA	NA	NA	NA
1351289	1206812330	PD9774b	X	46363091	C	A	ENSG00000251192	ENST00000503801	r.?	-	-	intronic	34	0	0	45	4	8.888888889	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.573476703	0.573476703	1	0.00625	0.99375	0	0	2	7.91E-05	1	1	1	NA	NA	NA	NA
1351289	1206812391	PD9774b	X	47016376	G	A	RBM10	CCDS14274.1	r.?	-	-	intronic	25	0	0	56	5	8.928571429	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.576036866	0.576036866	1	0.01	0.99	0	0	2	9.65E-06	1	1	1	NA	NA	NA	NA
1351289	1206812532	PD9774b	X	48438321	T	A	RBM3	CCDS14301.1	r.?	-	-	downstream	19	0	0	47	6	12.76595745	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.823610158	0.823610158	1	0.00125	0.99875	0	0	2	1.41E-07	1	1	1	NA	NA	NA	NA
1351289	1206812536	PD9774b	X	48499613	G	A	-	-	-	-	-	-	39	0	0	39	7	17.94871795	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.157981803	1.157981803	1	0	0.99625	0.00375	0	2	1.04E-09	1	1	1	NA	NA	NA	NA
1351289	1206812620	PD9774b	X	49521812	C	A	-	-	-	-	-	-	26	0	0	54	5	9.259259259	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.597371565	0.597371565	1	0.00875	0.99	0.00125	0	2	8.06E-06	1	1	1	NA	NA	NA	NA
1351289	1206812664	PD9774b	X	50081466	G	A	CCNB3	CCDS14331.1	r.?	-	-	intronic	24	0	0	43	8	18.60465116	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.200300075	1.200300075	1	0	0.995	0.005	0	2	4.85E-11	1	1	1	NA	NA	NA	NA
1351289	1206812680	PD9774b	X	50496228	G	A	SHROOM4	CCDS35277.1	r.?	-	-	intronic	31	0	0	45	6	13.33333333	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.860215054	0.860215054	1	0	1	0	0	2	1.08E-07	1	1	1	NA	NA	NA	NA
1351289	1206812716	PD9774b	X	51012623	G	A	-	-	-	-	-	-	35	0	0	62	9	14.51612903	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.936524454	0.936524454	1	0	1	0	0	2	3.12E-11	1	1	1	NA	NA	NA	NA
1351289	1206812802	PD9774b	X	51853254	C	A	-	-	-	-	-	-	38	0	0	43	12	27.90697674	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.800450113	1.800450113	1	0	0.96125	0.03875	0	2	3.24E-18	1	1	1	NA	NA	NA	NA
1351289	1206812810	PD9774b	X	51978227	C	A	-	-	-	-	-	-	41	0	0	54	4	7.407407407	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.477897252	0.477897252	1	0.0125	0.9875	0	0	2	0.000161898	1	1	1	NA	NA	NA	NA
1351289	1206812878	PD9774b	X	53291019	C	A	IQSEC2	CCDS48130.1	r.?	-	-	intronic	33	0	0	46	13	28.26086957	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.823281907	1.823281907	1	0	0.95	0.05	0	2	1.07E-19	1	1	1	NA	NA	NA	NA
1351289	1206813093	PD9774b	X	56311971	T	A	KLF8	CCDS14373.1	r.?	-	-	downstream	31	0	0	37	9	24.32432432	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.569311247	1.569311247	1	0	0.9875	0.0125	0	2	2.14E-13	1	1	1	NA	NA	NA	NA
1351289	1206813185	PD9774b	X	57541481	G	A	-	-	-	-	-	-	29	0	0	54	5	9.259259259	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.597371565	0.597371565	1	0.0025	0.9975	0	0	2	8.06E-06	1	1	1	NA	NA	NA	NA
1351289	1206814687	PD9774b	X	62516292	G	A	-	-	-	-	-	-	44	0	0	67	7	10.44776119	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.674049109	0.674049109	1	0.005	0.995	0	0	2	5.23E-08	1	1	1	NA	NA	NA	NA
1351289	1206814716	PD9774b	X	63192179	T	A	-	-	-	-	-	-	31	0	0	41	5	12.19512195	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.786782061	0.786782061	1	0	1	0	0	2	2.02E-06	1	1	1	NA	NA	NA	NA
1351289	1206814724	PD9774b	X	63396792	G	A	-	-	-	-	-	-	29	0	0	50	7	14	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.903225806	0.903225806	1	0.00375	0.99625	0	0	2	6.46E-09	1	1	1	NA	NA	NA	NA
1351289	1206814896	PD9774b	X	66974907	T	A	-	-	-	-	-	-	34	0	0	49	8	16.32653061	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.053324556	1.053324556	1	0.00125	0.99875	0	0	2	1.47E-10	1	1	1	NA	NA	NA	NA
1351289	1206815001	PD9774b	X	67996595	C	A	-	-	-	-	-	-	28	0	0	49	4	8.163265306	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.526662278	0.526662278	1	0.005	0.995	0	0	2	0.000110643	1	1	1	NA	NA	NA	NA
1351289	1206815063	PD9774b	X	68720192	G	A	FAM155B	CCDS35317.1	r.?	-	-	upstream	28	0	0	59	10	16.94915254	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.093493712	1.093493712	1	0	0.9975	0.0025	0	2	4.91E-13	1	1	1	NA	NA	NA	NA
1351289	1206815064	PD9774b	X	68721682	T	A	FAM155B	CCDS35317.1	r.?	-	-	upstream	24	0	0	59	6	10.16949153	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.656096227	0.656096227	1	0.00375	0.995	0.00125	0	2	5.61E-07	1	1	1	NA	NA	NA	NA
1351289	1206815095	PD9774b	X	69012308	T	A	EDA	CCDS14394.1	r.?	-	-	intronic	30	0	0	64	7	10.9375	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.705645161	0.705645161	1	0.005	0.995	0	0	2	3.78E-08	1	1	1	NA	NA	NA	NA
1351289	1206815275	PD9774b	X	71031728	C	A	-	-	-	-	-	-	25	0	0	47	10	21.27659574	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.372683596	1.372683596	1	0	0.99125	0.00875	0	2	4.27E-14	1	1	1	NA	NA	NA	NA
1351289	1206815279	PD9774b	X	71087715	G	A	-	-	-	-	-	-	30	0	0	42	5	11.9047619	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.768049155	0.768049155	1	0.00375	0.99625	0	0	2	2.28E-06	1	1	1	NA	NA	NA	NA
1351289	1206815330	PD9774b	X	71915352	G	A	PHKA1	CCDS48137.1	r.?	-	-	intronic	21	0	0	52	7	13.46153846	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.868486352	0.868486352	1	0	1	0	0	2	8.58E-09	1	1	1	NA	NA	NA	NA
1351289	1206815367	PD9774b	X	72439194	G	A	NAP1L2	CCDS14423.1	r.?	-	-	upstream	35	0	0	48	8	16.66666667	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.075268817	1.075268817	1	0	1	0	0	2	1.23E-10	1	1	1	NA	NA	NA	NA
1351289	1206815382	PD9774b	X	72698051	G	A	-	-	-	-	-	-	46	0	0	58	10	17.24137931	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.112347052	1.112347052	1	0	1	0	0	2	4.10E-13	1	1	1	NA	NA	NA	NA
1351289	1206815473	PD9774b	X	74352040	G	A	ABCB7	CCDS14428.1	r.?	-	-	intronic	27	0	0	47	11	23.40425532	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.509951956	1.509951956	1	0	0.99375	0.00625	0	2	7.21E-16	1	1	1	NA	NA	NA	NA
1351289	1206815622	PD9774b	X	77132711	G	A	MAGT1	CCDS14436.2	r.?	-	-	intronic	22	0	0	46	8	17.39130435	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.122019635	1.122019635	1	0	0.99875	0.00125	0	2	8.61E-11	1	1	1	NA	NA	NA	NA
1351289	1206815649	PD9774b	X	77525828	T	A	CYSLTR1	CCDS14439.1	r.?	-	-	downstream	31	0	0	46	5	10.86956522	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.701262272	0.701262272	1	0.0025	0.99625	0.00125	0	2	3.61E-06	1	1	1	NA	NA	NA	NA
1351289	1206815710	PD9774b	X	78929632	C	A	-	-	-	-	-	-	38	0	0	56	4	7.142857143	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.460829493	0.460829493	1	0.0125	0.9875	0	0	2	0.000186538	1	1	1	NA	NA	NA	NA
1351289	1206815748	PD9774b	X	79533392	G	A	-	-	-	-	-	-	36	0	0	49	7	14.28571429	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.921658986	0.921658986	1	0	1	0	0	2	5.58E-09	1	1	1	NA	NA	NA	NA
1351289	1206815749	PD9774b	X	79534604	C	A	-	-	-	-	-	-	48	0	0	55	9	16.36363636	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.055718475	1.055718475	1	0	1	0	0	2	1.01E-11	1	1	1	NA	NA	NA	NA
1351289	1206815775	PD9774b	X	80081206	T	A	-	-	-	-	-	-	33	0	0	54	7	12.96296296	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	0.965949821	0.965949821	1	0	1	0	0	2	1.13E-08	1	1	1	NA	NA	NA	NA
1351289	1206815876	PD9774b	X	81477675	G	A	-	-	-	-	-	-	39	0	0	65	11	16.92307692	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	1.261042184	1.261042184	1	0	0.99375	0.00625	0	2	3.41E-14	1	1	1	NA	NA	NA	NA
1351289	1206815882	PD9774b	X	81671506	T	A	-	-	-	-	-	-	34	0	0	53	5	9.433962264	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.608642727	0.608642727	1	0.00625	0.99375	0	0	2	7.34E-06	1	1	1	NA	NA	NA	NA
1351289	1206815938	PD9774b	X	82572488	G	A	-	-	-	-	-	-	30	0	0	51	5	9.803921569	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.632511069	0.632511069	1	0.00375	0.99625	0	0	2	6.06E-06	1	1	1	NA	NA	NA	NA
1351289	1206815944	PD9774b	X	82610428	G	A	-	-	-	-	-	-	30	0	0	49	8	16.32653061	1	0	0	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.053324556	1.053324556	1	0.00125	0.9975	0.00125	0	2	1.47E-10	1	1	1	NA	NA	NA	NA
1351289	1206815969	PD9774b	X	82963326	T	A	-	-	-	-	-	-	35	0	0	60	6	10	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.64516129	0.64516129	1	0.00625	0.99375	0	0	2	6.21E-07	1	1	1	NA	NA	NA	NA
1351289	1206816042	PD9774b	X	84106838	T	A	-	-	-	-	-	-	32	0	0	53	4	7.547169811	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.486914181	0.486914181	1	0.01	0.99	0	0	2	0.000150502	1	1	1	NA	NA	NA	NA
1351289	1206816070	PD9774b	X	84650608	G	A	-	-	-	-	-	-	29	0	0	51	6	11.76470588	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.759013283	0.759013283	1	0.00125	0.9975	0.00125	0	2	2.32E-07	1	1	1	NA	NA	NA	NA
1351289	1206816183	PD9774b	X	86053249	G	A	DACH2	CCDS48140.1	r.?	-	-	intronic	38	0	0	61	7	11.47540984	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.740349022	0.740349022	1	0	1	0	0	2	2.69E-08	1	1	1	NA	NA	NA	NA
1351289	1206816529	PD9774b	X	89133980	C	A	-	-	-	-	-	-	15	0	0	29	4	13.79310345	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.889877642	0.889877642	1	0.00375	0.99625	0	0	2	1.34E-05	1	1	1	NA	NA	NA	NA
1351289	1206816686	PD9774b	X	91755333	T	A	PCDH11X	CCDS14461.1	r.?	-	-	intronic	33	0	0	46	4	8.695652174	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.561009818	0.561009818	1	0.00875	0.99125	0	0	2	8.62E-05	1	1	1	NA	NA	NA	NA
1351289	1206816691	PD9774b	X	91867052	T	A	PCDH11X	CCDS14461.1	r.?	-	-	intronic	23	0	0	55	6	10.90909091	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.703812317	0.703812317	1	0.00125	0.99875	0	0	2	3.67E-07	1	1	1	NA	NA	NA	NA
1351289	1206816741	PD9774b	X	92620489	C	A	-	-	-	-	-	-	40	0	0	59	11	18.6440678	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.202843084	1.202843084	1	0	0.99875	0.00125	0	2	1.10E-14	1	1	1	NA	NA	NA	NA
1351289	1206816742	PD9774b	X	92623671	G	A	-	-	-	-	-	-	33	0	0	55	5	9.090909091	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.586510264	0.586510264	1	0.00375	0.99625	0	0	2	8.83E-06	1	1	1	NA	NA	NA	NA
1351289	1206816752	PD9774b	X	92749946	T	A	-	-	-	-	-	-	40	0	0	57	10	17.54385965	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.131861913	1.131861913	1	0	1	0	0	2	3.40E-13	1	1	1	NA	NA	NA	NA
1351289	1206816790	PD9774b	X	93351795	C	A	-	-	-	-	-	-	36	0	0	50	8	16	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.032258065	1.032258065	1	0.00125	0.99875	0	0	2	1.74E-10	1	1	1	NA	NA	NA	NA
1351289	1206816844	PD9774b	X	94106515	T	A	-	-	-	-	-	-	38	0	0	55	6	10.90909091	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.703812317	0.703812317	1	0.0025	0.9975	0	0	2	3.67E-07	1	1	1	NA	NA	NA	NA
1351289	1206816936	PD9774b	X	95573049	T	A	-	-	-	-	-	-	35	0	0	57	8	14.03508772	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.90548953	0.90548953	1	0.00125	0.99875	0	0	2	5.19E-10	1	1	1	NA	NA	NA	NA
1351289	1206816964	PD9774b	X	95975594	G	A	DIAPH2	CCDS14467.1	r.?	-	-	intronic	34	0	0	57	6	10.52631579	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.679117148	0.679117148	1	0.0025	0.9975	0	0	2	4.56E-07	1	1	1	NA	NA	NA	NA
1351289	1206817077	PD9774b	X	97354535	C	A	-	-	-	-	-	-	31	0	0	52	7	13.46153846	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.868486352	0.868486352	1	0	1	0	0	2	8.58E-09	1	1	1	NA	NA	NA	NA
1351289	1206817219	PD9774b	X	99587011	G	A	PCDH19	CCDS43976.1	r.?	-	-	intronic	33	0	0	47	8	17.0212766	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.098146877	1.098146877	1	0	0.99875	0.00125	0	2	1.03E-10	1	1	1	NA	NA	NA	NA
1351289	1206817286	PD9774b	X	100292961	G	A	TRMT2B	CCDS14477.1	r.1156c>u	c.383C>T	p.T128M	missense	41	0	0	48	12	25	216	0	0	202	22	10.89108911	2	1	1	1	NA	NA	NA	unphased	1.612903226	1.612903226	1	0	0.97625	0.02375	0	2	1.44E-17	1	1.43E-22	1	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206817388	PD9774b	X	101672744	C	A	NXF2B	CCDS43979.1	r.?	-	-	intronic	60	0	0	69	5	7.246376812	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.467508181	0.467508181	1	0.01125	0.98875	0	0	2	2.69E-05	1	1	1	NA	NA	NA	NA
1351289	1206817448	PD9774b	X	102507320	T	A	TCEAL8	CCDS14504.1	r.?	-	-	downstream	26	0	0	51	12	23.52941176	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.518026565	1.518026565	1	0	0.9875	0.0125	0	2	3.24E-17	1	1	1	NA	NA	NA	NA
1351289	1206817514	PD9774b	X	103539081	C	A	-	-	-	-	-	-	41	0	0	48	9	18.75	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.209677419	1.209677419	1	0.00125	0.99625	0.0025	0	2	2.75E-12	1	1	1	NA	NA	NA	NA
1351289	1206817515	PD9774b	X	103539082	T	A	-	-	-	-	-	-	41	0	0	48	9	18.75	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.209677419	1.209677419	1	0	1	0	0	2	2.75E-12	1	1	1	NA	NA	NA	NA
1351289	1206817562	PD9774b	X	104239184	C	A	IL1RAPL2	CCDS14517.1	r.?	-	-	intronic	41	0	0	51	7	13.7254902	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.885515497	0.885515497	1	0.0025	0.9975	0	0	2	7.46E-09	1	1	1	NA	NA	NA	NA
1351289	1206817588	PD9774b	X	104863005	C	A	IL1RAPL2	CCDS14517.1	r.?	-	-	intronic	44	0	0	59	6	10.16949153	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.656096227	0.656096227	1	0.0075	0.99125	0.00125	0	2	5.61E-07	1	1	1	NA	NA	NA	NA
1351289	1206817631	PD9774b	X	105801515	T	A	-	-	-	-	-	-	45	0	0	46	7	15.2173913	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.981767181	0.981767181	1	0.00125	0.99875	0	0	2	3.53E-09	1	1	1	NA	NA	NA	NA
1351289	1206817704	PD9774b	X	106925604	G	A	-	-	-	-	-	-	29	0	0	46	5	10.86956522	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.701262272	0.701262272	1	0.00125	0.99875	0	0	2	3.61E-06	1	1	1	NA	NA	NA	NA
1351289	1206817746	PD9774b	X	107755132	T	A	COL4A5	CCDS35366.1	r.?	-	-	intronic	34	0	0	60	5	8.333333333	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.537634409	0.537634409	1	0.0075	0.9925	0	0	2	1.36E-05	1	1	1	NA	NA	NA	NA
1351289	1206817777	PD9774b	X	108226078	C	A	-	-	-	-	-	-	37	0	0	60	5	8.333333333	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.537634409	0.537634409	1	0.005	0.995	0	0	2	1.36E-05	1	1	1	NA	NA	NA	NA
1351289	1206817799	PD9774b	X	108630288	G	A	GUCY2F	CCDS14545.1	r.?	-	-	intronic	36	0	0	56	8	14.28571429	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.921658986	0.921658986	1	0	0.99875	0.00125	0	2	4.48E-10	1	1	1	NA	NA	NA	NA
1351289	1206817820	PD9774b	X	108982616	T	A	-	-	-	-	-	-	26	0	0	41	5	12.19512195	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.786782061	0.786782061	1	0.0025	0.9975	0	0	2	2.02E-06	1	1	1	NA	NA	NA	NA
1351289	1206817892	PD9774b	X	110131034	C	A	-	-	-	-	-	-	39	0	0	52	7	13.46153846	0	0	NA	0	0	NA	0.837155243	0	0	0.162844757	1	0	0.837155243	unphased	0.711949558	0.850439108	0.837155243	0.0025	0.9975	0	0	2	8.58E-09	1	1	1	NA	NA	NA	NA
1351289	1206817995	PD9774b	X	112211250	G	A	-	-	-	-	-	-	26	0	0	45	5	11.11111111	0	0	NA	0	0	NA	0.837155243	0	0	0.162844757	1	0	0.837155243	unphased	0.587640905	0.70194974	0.837155243	0.0025	0.9975	0	0	2	3.23E-06	1	1	1	NA	NA	NA	NA
1351289	1206818018	PD9774b	X	112599143	T	A	-	-	-	-	-	-	33	0	0	46	6	13.04347826	0	0	NA	0	0	NA	0.837155243	0	0	0.162844757	1	0	0.837155243	unphased	0.689839323	0.824027955	0.837155243	0	1	0	0	2	1.23E-07	1	1	1	NA	NA	NA	NA
1351289	1206818161	PD9774b	X	114557229	C	A	-	-	-	-	-	-	32	0	0	45	9	20	0	0	NA	0	0	NA	0.837155243	0	0	0.162844757	1	0	0.837155243	unphased	1.057753629	1.057753629	1	0	1	0	0	2	1.47E-12	1	1	1	NA	NA	NA	NA
1351289	1206818565	PD9774b	X	120540308	G	A	-	-	-	-	-	-	24	0	0	42	6	14.28571429	0	0	NA	0	0	NA	0.396306917	0	0	0.603693083	1	0	0.396306917	unphased	0.692559974	0.692559974	1	0.0125	0.9875	0	0	2	7.02E-08	1	1	1	NA	NA	NA	NA
1351289	1206818819	PD9774b	X	125351348	T	A	-	-	-	-	-	-	30	0	0	31	3	9.677419355	0	0	NA	0	0	NA	0.396306917	0	0	0.603693083	1	0	0.396306917	unphased	0.469153531	1.183813633	0.396306917	0.00125	0.9975	0.00125	0	2	0.000505952	1	1	1	NA	NA	NA	NA
1351289	1206818863	PD9774b	X	125897720	T	A	-	-	-	-	-	-	35	0	0	45	5	11.11111111	0	0	NA	0	0	NA	0.396306917	0	0	0.603693083	1	0	0.396306917	unphased	0.538657758	1.35919343	0.396306917	0	0.9975	0.0025	0	2	3.23E-06	1	1	1	NA	NA	NA	NA
1351289	1206818957	PD9774b	X	127452869	C	A	-	-	-	-	-	-	42	0	0	46	7	15.2173913	0	0	NA	0	0	NA	0.396306917	0	0	0.603693083	1	0	0.396306917	unphased	0.737726929	0.737726929	1	0.00125	0.99875	0	0	2	3.53E-09	1	1	1	NA	NA	NA	NA
1351289	1206818977	PD9774b	X	127813546	C	A	-	-	-	-	-	-	45	0	0	36	5	13.88888889	0	0	NA	0	0	NA	0.396306917	0	0	0.603693083	1	0	0.396306917	unphased	0.673322197	0.673322197	1	0	1	0	0	2	1.04E-06	1	1	1	NA	NA	NA	NA
1351289	1206819545	PD9774b	X	139259810	C	A	-	-	-	-	-	-	20	0	0	38	6	15.78947368	0	0	NA	0	0	NA	0.396306917	0	0	0.603693083	1	0	0.396306917	unphased	0.765461024	0.765461024	1	0.0025	0.9975	0	0	2	3.76E-08	1	1	1	NA	NA	NA	NA
1351289	1206819623	PD9774b	X	140773926	T	A	-	-	-	-	-	-	28	0	0	43	4	9.302325581	0	0	NA	0	0	NA	0.396306917	0	0	0.603693083	1	0	0.396306917	unphased	0.450969286	1.137929384	0.396306917	0.0025	0.99625	0.00125	0	2	6.60E-05	1	1	1	NA	NA	NA	NA
1351289	1206819634	PD9774b	X	140959733	C	A	MAGEC3	CCDS14676.1	r.?	-	-	intronic	22	0	0	48	5	10.41666667	2	0	0	0	0	NA	0.396306917	0	0	0.603693083	1	0	0.396306917	unphased	0.504991648	1.274243841	0.396306917	0.00125	0.9975	0.00125	0	2	4.47E-06	1	1	1	NA	NA	NA	NA
1351289	1206819850	PD9774b	X	145031862	C	A	-	-	-	-	-	-	26	0	0	27	4	14.81481481	0	0	NA	0	0	NA	0.396306917	0	0	0.603693083	1	0	0.396306917	unphased	0.718210344	0.718210344	1	0.0025	0.99625	0.00125	0	2	1.00E-05	1	1	1	NA	NA	NA	NA
1351289	1206819948	PD9774b	X	146681927	C	A	-	-	-	-	-	-	38	0	0	55	6	10.90909091	0	0	NA	0	0	NA	0.396306917	0	0	0.603693083	1	0	0.396306917	unphased	0.52886398	1.334480822	0.396306917	0	0.99125	0.00875	0	2	3.67E-07	1	1	1	NA	NA	NA	NA
1351289	1206820335	PD9774b	X	154009163	G	A	SNORA56	CCDS14761.1	r.?	-	-	downstream	29	0	0	35	4	11.42857143	0	0	NA	0	0	NA	0.396306917	0	0	0.603693083	1	0	0.396306917	unphased	0.554047979	1.398027528	0.396306917	0	0.995	0.005	0	2	2.89E-05	1	1	1	NA	NA	NA	NA
1351289	1206479283	PD9774b	1	1386225	G	C	ATAD3C	CCDS44039.1	r.?	-	-	intronic	28	0	0	36	8	22.22222222	2	0	0	0	0	NA	1.28043747	1	0	0.71956253	1	1	0.28043747	unphased	1.273788972	1.273788972	1	0	0.99625	0.00375	0	2	1.04E-11	1	1	1	NA	NA	NA	NA
1351289	1206480261	PD9774b	1	4502982	T	C	-	-	-	-	-	-	27	0	0	55	14	25.45454545	0	0	NA	0	0	NA	1.28043747	1	0	0.71956253	1	1	0.28043747	unphased	1.459067368	1.459067368	1	0	0.98625	0.01375	0	2	2.19E-20	1	1	1	NA	NA	NA	NA
1351289	1206480606	PD9774b	1	6443516	G	C	ACOT7	CCDS30573.1	r.?	-	-	intronic	31	0	0	49	4	8.163265306	0	0	NA	0	0	NA	1.28043747	1	0	0.71956253	1	1	0.28043747	unphased	0.467922479	0.467922479	1	0.01125	0.98875	0	0	2	0.000110643	1	1	1	NA	NA	NA	NA
1351289	1206481017	PD9774b	1	12113366	G	C	-	-	-	-	-	-	33	0	0	38	6	15.78947368	0	0	NA	0	0	NA	0.401924708	0	0	0.598075292	1	0	0.401924708	unphased	0.766348044	0.766348044	1	0.00375	0.99625	0	0	2	3.76E-08	1	1	1	NA	NA	NA	NA
1351289	1206482172	PD9774b	1	18955038	T	C	PAX7	CCDS44074.1	r.?	-	-	upstream	54	0	0	44	5	11.36363636	0	0	NA	0	0	NA	1.828511191	1	0	0.171488809	1	1	0.828511191	unphased	0.713650465	0.861364907	0.828511191	0.00125	0.99875	0	0	2	2.88E-06	1	1	1	NA	NA	NA	NA
1351289	1206482536	PD9774b	1	22551675	G	C	-	-	-	-	-	-	41	0	0	54	4	7.407407407	0	0	NA	0	0	NA	1.828511191	1	0	0.171488809	1	1	0.828511191	unphased	0.465194377	0.56148231	0.828511191	0.005	0.995	0	0	2	0.000161898	1	1	1	NA	NA	NA	NA
1351289	1206482931	PD9774b	1	26849891	G	C	-	-	-	-	-	-	36	0	0	37	5	13.51351351	0	0	NA	0	0	NA	1.828511191	1	0	0.171488809	1	1	0.828511191	unphased	0.848665418	1.024325835	0.828511191	0	0.9975	0.0025	0	2	1.19E-06	1	1	1	NA	NA	NA	NA
1351289	1206482932	PD9774b	1	26851521	A	C	RPS6KA1	CCDS284.1	r.?	-	-	upstream	36	0	0	57	5	8.771929825	0	0	NA	0	0	NA	1.828511191	1	0	0.171488809	1	1	0.828511191	unphased	0.550888078	0.664913262	0.828511191	0.00375	0.99625	0	0	2	1.05E-05	1	1	1	NA	NA	NA	NA
1351289	1206482952	PD9774b	1	27121966	G	C	PIGV	CCDS287.1	r.?	-	-	intronic	27	0	0	41	6	14.63414634	0	0	NA	0	0	NA	1.828511191	1	0	0.171488809	1	1	0.828511191	unphased	0.91904255	0.91904255	1	0.0025	0.995	0.0025	0	2	6.05E-08	1	1	1	NA	NA	NA	NA
1351289	1206483193	PD9774b	1	29540578	T	C	MECR	CCDS30660.1	r.?	-	-	intronic	30	0	0	55	4	7.272727273	0	0	NA	0	0	NA	1.828511191	1	0	0.171488809	1	1	0.828511191	unphased	0.456736298	0.55127354	0.828511191	0.0075	0.9925	0	0	2	0.000173903	1	1	1	NA	NA	NA	NA
1351289	1206483217	PD9774b	1	29838794	T	C	ENSG00000231360	ENST00000455342	r.?	-	-	intronic	35	0	0	49	4	8.163265306	0	0	NA	0	0	NA	1.828511191	1	0	0.171488809	1	1	0.828511191	unphased	0.512663191	0.618776423	0.828511191	0.00125	0.9975	0.00125	0	2	0.000110643	1	1	1	NA	NA	NA	NA
1351289	1206483218	PD9774b	1	29840795	T	C	ENSG00000231360	ENST00000455342	r.?	-	-	intronic	34	0	0	52	6	11.53846154	0	0	NA	0	0	NA	1.828511191	1	0	0.171488809	1	1	0.828511191	unphased	0.724629703	0.874616675	0.828511191	0.00125	0.9975	0.00125	0	2	2.61E-07	1	1	1	NA	NA	NA	NA
1351289	1206483414	PD9774b	1	32025776	G	C	-	-	-	-	-	-	30	0	0	54	4	7.407407407	0	0	NA	0	0	NA	1.828511191	1	0	0.171488809	1	1	0.828511191	unphased	0.465194377	0.56148231	0.828511191	0.00375	0.99625	0	0	2	0.000161898	1	1	1	NA	NA	NA	NA
1351289	1206483803	PD9774b	1	36870239	A	C	-	-	-	-	-	-	28	0	0	66	11	16.66666667	0	0	NA	0	0	NA	1.828511191	1	0	0.171488809	1	1	0.828511191	unphased	1.046687349	1.046687349	1	0	1	0	0	2	4.07E-14	1	1	1	NA	NA	NA	NA
1351289	1206483829	PD9774b	1	37071825	G	C	-	-	-	-	-	-	34	0	0	50	4	8	0	0	NA	0	0	NA	1.828511191	1	0	0.171488809	1	1	0.828511191	unphased	0.502409928	0.606400895	0.828511191	0.005	0.995	0	0	2	0.000119787	1	1	1	NA	NA	NA	NA
1351289	1206484128	PD9774b	1	40661703	G	C	RLF	CCDS448.1	r.?	-	-	intronic	31	0	0	41	7	17.07317073	0	0	NA	0	0	NA	1.828511191	1	0	0.171488809	1	1	0.828511191	unphased	1.072216309	1.072216309	1	0	0.99625	0.00375	0	2	1.51E-09	1	1	1	NA	NA	NA	NA
1351289	1206484235	PD9774b	1	42027121	G	C	HIVEP3	CCDS44124.1	r.?	-	-	intronic	37	0	0	45	6	13.33333333	0	0	NA	0	0	NA	1.828511191	1	0	0.171488809	1	1	0.828511191	unphased	0.837349879	1.010668158	0.828511191	0.00125	0.99875	0	0	2	1.08E-07	1	1	1	NA	NA	NA	NA
1351289	1206484353	PD9774b	1	43530298	A	C	-	-	-	-	-	-	31	0	0	55	5	9.090909091	0	0	NA	0	0	NA	1.828511191	1	0	0.171488809	1	1	0.828511191	unphased	0.570920372	0.689091926	0.828511191	0.00125	0.99875	0	0	2	8.83E-06	1	1	1	NA	NA	NA	NA
1351289	1206484839	PD9774b	1	51263157	G	C	FAF1	CCDS554.1	r.?	-	-	intronic	26	0	0	45	7	15.55555556	0	0	NA	0	0	NA	1.828511191	1	0	0.171488809	1	1	0.828511191	unphased	0.976908192	0.976908192	1	0.00125	0.99625	0.0025	0	2	3.00E-09	1	1	1	NA	NA	NA	NA
1351289	1206485095	PD9774b	1	54377321	G	C	DIO1	CCDS41339.1	r.?	-	-	downstream	35	0	0	44	4	9.090909091	0	0	NA	0	0	NA	1.828511191	1	0	0.171488809	1	1	0.828511191	unphased	0.570920372	0.689091926	0.828511191	0	1	0	0	2	7.23E-05	1	1	1	NA	NA	NA	NA
1351289	1206485212	PD9774b	1	56207337	T	C	-	-	-	-	-	-	41	0	0	49	9	18.36734694	0	0	NA	0	0	NA	1.591961208	1	0	0.408038792	1	1	0.591961208	unphased	1.110044225	1.110044225	1	0.00125	0.995	0.00375	0	2	3.35E-12	1	1	1	NA	NA	NA	NA
1351289	1206485223	PD9774b	1	56578463	G	C	-	-	-	-	-	-	50	0	0	52	5	9.615384615	0	0	NA	0	0	NA	1.591961208	1	0	0.408038792	1	1	0.591961208	unphased	0.581112895	0.981673947	0.591961208	0	0.99875	0.00125	0	2	6.68E-06	1	1	1	NA	NA	NA	NA
1351289	1206485304	PD9774b	1	58069046	T	C	DAB1	CCDS607.1	r.?	-	-	intronic	35	0	0	30	4	13.33333333	0	0	NA	0	0	NA	1.591961208	1	0	0.408038792	1	1	0.591961208	unphased	0.805809881	0.805809881	1	0.00125	0.99875	0	0	2	1.54E-05	1	1	1	NA	NA	NA	NA
1351289	1206485387	PD9774b	1	59279194	G	C	-	-	-	-	-	-	21	0	0	47	7	14.89361702	0	0	NA	0	0	NA	1.591961208	1	0	0.408038792	1	1	0.591961208	unphased	0.900106783	0.900106783	1	0.00375	0.99625	0	0	2	4.12E-09	1	1	1	NA	NA	NA	NA
1351289	1206485494	PD9774b	1	61022175	G	C	-	-	-	-	-	-	33	0	0	46	4	8.695652174	0	0	NA	0	0	NA	1.591961208	1	0	0.408038792	1	1	0.591961208	unphased	0.525528184	0.8877747	0.591961208	0.00375	0.99375	0.0025	0	2	8.62E-05	1	1	1	NA	NA	NA	NA
1351289	1206485515	PD9774b	1	61357967	A	C	NFIA	ENST00000371191	r.?	-	-	intronic	34	0	0	60	5	8.333333333	0	0	NA	0	0	NA	1.591961208	1	0	0.408038792	1	1	0.591961208	unphased	0.503631176	0.850784087	0.591961208	0.00125	0.99875	0	0	2	1.36E-05	1	1	1	NA	NA	NA	NA
1351289	1206485522	PD9774b	1	61426341	A	C	NFIA	ENST00000371191	r.?	-	-	intronic	39	0	0	54	11	20.37037037	0	0	NA	0	0	NA	1.591961208	1	0	0.408038792	1	1	0.591961208	unphased	1.23109843	1.23109843	1	0	1	0	0	2	3.84E-15	1	1	1	NA	NA	NA	NA
1351289	1206485708	PD9774b	1	63607378	A	C	-	-	-	-	-	-	37	0	0	69	8	11.5942029	0	0	NA	0	0	NA	1.591961208	1	0	0.408038792	1	1	0.591961208	unphased	0.700704245	1.183699599	0.591961208	0	0.99875	0.00125	0	2	2.49E-09	1	1	1	NA	NA	NA	NA
1351289	1206485716	PD9774b	1	63732178	G	C	-	-	-	-	-	-	35	0	0	64	7	10.9375	0	0	NA	0	0	NA	1.591961208	1	0	0.408038792	1	1	0.591961208	unphased	0.661015918	1.116654114	0.591961208	0	0.99875	0.00125	0	2	3.78E-08	1	1	1	NA	NA	NA	NA
1351289	1206486023	PD9774b	1	67910181	A	C	-	-	-	-	-	-	34	0	0	43	5	11.62790698	0	0	NA	0	0	NA	1.591961208	1	0	0.408038792	1	1	0.591961208	unphased	0.702741176	1.187140587	0.591961208	0.0025	0.99625	0.00125	0	2	2.57E-06	1	1	1	NA	NA	NA	NA
1351289	1206486334	PD9774b	1	72442637	T	C	NEGR1	CCDS661.1	r.?	-	-	intronic	38	0	0	69	10	14.49275362	0	0	NA	0	0	NA	1.591961208	1	0	0.408038792	1	1	0.591961208	unphased	0.875880306	0.875880306	1	0.00125	0.99875	0	0	2	2.54E-12	1	1	1	NA	NA	NA	NA
1351289	1206486525	PD9774b	1	74846697	G	C	TNNI3K	CCDS44161.1	r.?	-	-	intronic	37	0	0	67	5	7.462686567	0	0	NA	0	0	NA	1.591961208	1	0	0.408038792	1	1	0.591961208	unphased	0.451012993	0.761896197	0.591961208	0.0025	0.99625	0.00125	0	2	2.33E-05	1	1	1	NA	NA	NA	NA
1351289	1206486536	PD9774b	1	75165096	A	C	-	-	-	-	-	-	30	0	0	62	4	6.451612903	0	0	NA	0	0	NA	1.591961208	1	0	0.408038792	1	1	0.591961208	unphased	0.389908007	0.658671551	0.591961208	0.00375	0.995	0.00125	0	2	0.000276647	1	1	1	NA	NA	NA	NA
1351289	1206486648	PD9774b	1	76455194	T	C	-	-	-	-	-	-	44	0	0	69	7	10.14492754	0	0	NA	0	0	NA	1.591961208	1	0	0.408038792	1	1	0.591961208	unphased	0.613116214	1.035737149	0.591961208	0.0025	0.9975	0	0	2	6.43E-08	1	1	1	NA	NA	NA	NA
1351289	1206487026	PD9774b	1	81723929	A	C	-	-	-	-	-	-	29	0	0	54	5	9.259259259	0	0	NA	0	0	NA	1.591961208	1	0	0.408038792	1	1	0.591961208	unphased	0.559590195	0.945315652	0.591961208	0	0.99875	0.00125	0	2	8.06E-06	1	1	1	NA	NA	NA	NA
1351289	1206487073	PD9774b	1	82139731	T	C	LPHN2	ENST00000370728	r.?	-	-	intronic	27	0	0	47	8	17.0212766	0	0	NA	0	0	NA	1.591961208	1	0	0.408038792	1	1	0.591961208	unphased	1.028693466	1.028693466	1	0.00125	0.99625	0.0025	0	2	1.03E-10	1	1	1	NA	NA	NA	NA
1351289	1206487368	PD9774b	1	85178698	G	C	-	-	-	-	-	-	27	0	0	47	4	8.510638298	0	0	NA	0	0	NA	1.591961208	1	0	0.408038792	1	1	0.591961208	unphased	0.514346733	0.868885876	0.591961208	0	0.99875	0.00125	0	2	9.39E-05	1	1	1	NA	NA	NA	NA
1351289	1206487478	PD9774b	1	86266477	T	C	COL24A1	CCDS41353.1	r.?	-	-	intronic	31	0	0	50	14	28	0	0	NA	0	0	NA	1.591961208	1	0	0.408038792	1	1	0.591961208	unphased	1.692200751	1.692200751	1	0	0.97125	0.02875	0	2	4.84E-21	1	1	1	NA	NA	NA	NA
1351289	1206487593	PD9774b	1	88126061	T	C	-	-	-	-	-	-	25	0	0	53	4	7.547169811	0	0	NA	2	0	0	0	0	0	1	NA	NA	NA	unphased	0.335970785	0.335970785	1	0.02875	0.97125	0	0	2	0.000150502	1	1	1	NA	NA	NA	NA
1351289	1206487609	PD9774b	1	88361683	G	C	-	-	-	-	-	-	40	0	0	49	9	18.36734694	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.817643186	0.817643186	1	0	1	0	0	2	3.35E-12	1	1	1	NA	NA	NA	NA
1351289	1206487669	PD9774b	1	89377843	G	C	-	-	-	-	-	-	41	0	0	43	4	9.302325581	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.414103526	0.414103526	1	0.0225	0.9775	0	0	2	6.60E-05	1	1	1	NA	NA	NA	NA
1351289	1206487726	PD9774b	1	90182635	G	C	LRRC8C	CCDS725.1	r.4761g>c	c.?	p.?	3'UTR variant	38	0	0	51	4	7.843137255	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.34914611	0.34914611	1	0.04625	0.95375	0	0	2	0.000129466	1	1	1	NA	NA	NA	NA
1351289	1206487921	PD9774b	1	92895711	A	C	-	-	-	-	-	-	25	0	0	36	5	13.88888889	2	0	0	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.61827957	0.61827957	1	0.0025	0.9975	0	0	2	1.04E-06	1	1	1	NA	NA	NA	NA
1351289	1206488175	PD9774b	1	96136788	G	C	-	-	-	-	-	-	36	0	0	43	3	6.976744186	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.310577644	0.310577644	1	0.04375	0.95625	0	0	2	0.001328364	1	1	1	NA	NA	NA	NA
1351289	1206488370	PD9774b	1	99188611	G	C	SNX7	CCDS755.2	r.?	-	-	intronic	38	0	0	37	5	13.51351351	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.601569311	0.601569311	1	0.0075	0.9925	0	0	2	1.19E-06	1	1	1	NA	NA	NA	NA
1351289	1206488405	PD9774b	1	99591998	T	C	-	-	-	-	-	-	17	0	0	62	6	9.677419355	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.430801249	0.430801249	1	0.03625	0.96375	0	0	2	7.56E-07	1	1	1	NA	NA	NA	NA
1351289	1206488443	PD9774b	1	100228526	A	C	FRRS1	CCDS30780.1	r.?	-	-	intronic	32	0	0	38	3	7.894736842	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.351443124	0.351443124	1	0.025	0.975	0	0	2	0.000925091	1	1	1	NA	NA	NA	NA
1351289	1206488563	PD9774b	1	101636460	T	C	-	-	-	-	-	-	38	0	0	51	5	9.803921569	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.436432638	0.436432638	1	0.0175	0.9825	0	0	2	6.06E-06	1	1	1	NA	NA	NA	NA
1351289	1206489163	PD9774b	1	109377251	G	C	AKNAD1	CCDS791.2	r.?	-	-	intronic	35	0	0	46	7	15.2173913	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.677419355	0.677419355	1	0.00125	0.99875	0	0	2	3.53E-09	1	1	1	NA	NA	NA	NA
1351289	1206489308	PD9774b	1	111186990	A	C	-	-	-	-	-	-	30	0	0	39	4	10.25641026	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.456575682	0.456575682	1	0.0175	0.9825	0	0	2	4.47E-05	1	1	1	NA	NA	NA	NA
1351289	1206489837	PD9774b	1	117258411	G	C	-	-	-	-	-	-	30	0	0	43	12	27.90697674	0	0	NA	0	0	NA	1.624914468	1	0	0.375085532	1	1	0.624914468	unphased	1.69577508	1.69577508	1	0	0.97125	0.02875	0	2	3.24E-18	1	1	1	NA	NA	NA	NA
1351289	1206490037	PD9774b	1	120329724	G	C	-	-	-	-	-	-	32	0	0	39	6	15.38461538	0	0	NA	0	0	NA	1.624914468	1	0	0.375085532	1	1	0.624914468	unphased	0.934850365	0.934850365	1	0.0025	0.9975	0	0	2	4.43E-08	1	1	1	NA	NA	NA	NA
1351289	1206496006	PD9774b	1	143136212	A	C	-	-	-	-	-	-	74	0	0	87	6	6.896551724	0	0	NA	0	0	NA	1.624914468	1	0	0.375085532	1	1	0.624914468	unphased	0.419070853	0.670605138	0.624914468	0.0025	0.9975	0	0	2	5.58E-06	1	1	1	NA	NA	NA	NA
1351289	1206500846	PD9774b	1	144841677	T	C	-	-	-	-	-	-	90	0	0	115	7	6.086956522	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.392706872	0.392706872	1	0.06375	0.93625	0	0	2	2.14E-06	1	1	1	NA	NA	NA	NA
1351289	1206501257	PD9774b	1	145234150	T	C	NOTCH2NL	CCDS909.1	r.?	-	-	intronic	48	0	0	61	6	9.836065574	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.634584876	0.634584876	1	0.00125	0.99875	0	0	2	6.85E-07	1	1	1	NA	NA	NA	NA
1351289	1206501478	PD9774b	1	145414966	G	C	HFE2	CCDS910.1	r.?	-	-	intronic	33	0	0	50	5	10	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.64516129	0.64516129	1	0.00125	0.99875	0	0	2	5.49E-06	1	1	1	NA	NA	NA	NA
1351289	1206503785	PD9774b	1	150697431	A	C	HORMAD1	CCDS967.1	r.?	-	-	upstream	38	0	0	58	7	12.06896552	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.778642937	0.778642937	1	0.0025	0.9975	0	0	2	1.88E-08	1	1	1	NA	NA	NA	NA
1351289	1206503810	PD9774b	1	150903296	G	C	SETDB1	CCDS972.1	r.?	-	-	intronic	26	0	0	52	12	23.07692308	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.488833747	1.488833747	1	0	0.99375	0.00625	0	2	4.19E-17	1	1	1	NA	NA	NA	NA
1351289	1206503868	PD9774b	1	151389644	A	C	POGZ	CCDS997.1	r.?	-	-	intronic	33	0	0	47	11	23.40425532	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.509951956	1.509951956	1	0	0.985	0.015	0	2	7.21E-16	1	1	1	NA	NA	NA	NA
1351289	1206504011	PD9774b	1	152864223	T	C	-	-	-	-	-	-	36	0	0	68	10	14.70588235	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.948766603	0.948766603	1	0	1	0	0	2	2.18E-12	1	1	1	NA	NA	NA	NA
1351289	1206504111	PD9774b	1	153890604	G	C	GATAD2B	CCDS1054.1	r.?	-	-	intronic	31	0	0	40	9	22.5	0	0	NA	1	0	0	2	1	1	1	NA	NA	NA	unphased	1.451612903	1.451612903	1	0	0.99625	0.00375	0	2	4.64E-13	1	1	1	NA	NA	NA	NA
1351289	1206504134	PD9774b	1	154159816	G	C	TPM3	CCDS1060.1	r.?	-	-	upstream	39	0	0	67	4	5.970149254	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.38517092	0.38517092	1	0.03	0.97	0	0	2	0.000372648	1	1	1	NA	NA	NA	NA
1351289	1206504428	PD9774b	1	157260404	G	C	-	-	-	-	-	-	33	0	0	67	6	8.955223881	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.577756379	0.577756379	1	0.0075	0.9925	0	0	2	1.20E-06	1	1	1	NA	NA	NA	NA
1351289	1206504456	PD9774b	1	157709753	G	C	-	-	-	-	-	-	40	0	0	55	5	9.090909091	0	0	NA	0	0	NA	1.428392334	1	0	0.571607666	1	1	0.428392334	unphased	0.534545931	1.247795277	0.428392334	0.00125	0.99625	0.0025	0	2	8.83E-06	1	1	1	NA	NA	NA	NA
1351289	1206504765	PD9774b	1	161207971	T	C	NR1I3	CCDS41429.1	r.30a>g	c.?	p.?	5'UTR variant	31	0	0	57	6	10.52631579	0	0	NA	0	0	NA	1.428392334	1	0	0.571607666	1	1	0.428392334	unphased	0.61894792	0.61894792	1	0.00875	0.99125	0	0	2	4.56E-07	1	1	1	NA	NA	NA	NA
1351289	1206504818	PD9774b	1	161591398	G	C	FCGR3B	CCDS41433.1	r.?	-	-	downstream	36	0	0	57	13	22.80701754	220	0	0	194	20	10.30927835	1.428392334	1	0	0.571607666	1	1	0.428392334	unphased	1.341053826	1.341053826	1	0	0.99375	0.00625	0	2	2.44E-18	1	3.54E-20	1	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206504989	PD9774b	1	163457792	G	C	-	-	-	-	-	-	39	0	0	59	9	15.25423729	0	0	NA	0	0	NA	1.428392334	1	0	0.571607666	1	1	0.428392334	unphased	0.896949951	0.896949951	1	0.0025	0.99625	0.00125	0	2	1.96E-11	1	1	1	NA	NA	NA	NA
1351289	1206505000	PD9774b	1	163533931	T	C	-	-	-	-	-	-	32	0	0	51	14	27.45098039	212	0	0	463	85	18.35853132	1.428392334	1	0	0.571607666	1	1	0.428392334	unphased	1.614119085	1.614119085	1	0	0.97375	0.02625	0	2	6.64E-21	1	1.41E-102	1	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206505024	PD9774b	1	163995140	G	C	-	-	-	-	-	-	39	0	0	60	10	16.66666667	0	0	NA	0	0	NA	1.428392334	1	0	0.571607666	1	1	0.428392334	unphased	0.980000873	0.980000873	1	0.0025	0.9975	0	0	2	5.86E-13	1	1	1	NA	NA	NA	NA
1351289	1206505189	PD9774b	1	166423897	T	C	-	-	-	-	-	-	32	0	0	50	13	26	0	0	NA	0	0	NA	1.428392334	1	0	0.571607666	1	1	0.428392334	unphased	1.528801362	1.528801362	1	0	0.985	0.015	0	2	3.65E-19	1	1	1	NA	NA	NA	NA
1351289	1206505285	PD9774b	1	167796667	G	C	ADCY10	CCDS1265.1	r.?	-	-	intronic	27	0	0	51	12	23.52941176	0	0	NA	0	0	NA	1.428392334	1	0	0.571607666	1	1	0.428392334	unphased	1.383530644	1.383530644	1	0	0.9975	0.0025	0	2	3.24E-17	1	1	1	NA	NA	NA	NA
1351289	1206505308	PD9774b	1	168021553	T	C	DCAF6	CCDS1267.2	r.?	-	-	intronic	39	0	0	48	12	25	0	0	NA	0	0	NA	1.428392334	1	0	0.571607666	1	1	0.428392334	unphased	1.470001309	1.470001309	1	0	0.99125	0.00875	0	2	1.44E-17	1	1	1	NA	NA	NA	NA
1351289	1206505399	PD9774b	1	169189428	A	C	NME7	CCDS1277.1	r.?	-	-	intronic	24	0	0	50	5	10	0	0	NA	0	0	NA	1.428392334	1	0	0.571607666	1	1	0.428392334	unphased	0.588000524	1.372574805	0.428392334	0	0.99375	0.00625	0	2	5.49E-06	1	1	1	NA	NA	NA	NA
1351289	1206505507	PD9774b	1	170773933	T	C	-	-	-	-	-	-	39	0	0	45	9	20	0	0	NA	0	0	NA	1.428392334	1	0	0.571607666	1	1	0.428392334	unphased	1.176001047	1.176001047	1	0.00125	0.9975	0.00125	0	2	1.47E-12	1	1	1	NA	NA	NA	NA
1351289	1206505566	PD9774b	1	171503436	G	C	BAT2L2	ENST00000392078	r.?	-	-	intronic	40	0	0	62	13	20.96774194	0	0	NA	0	0	NA	1.57042276	1	0	0.42957724	1	1	0.57042276	unphased	1.262684897	1.262684897	1	0	0.9975	0.0025	0	2	8.08E-18	1	1	1	NA	NA	NA	NA
1351289	1206505611	PD9774b	1	172261236	G	C	DNM3	CCDS44276.1	r.?	-	-	intronic	23	0	0	55	8	14.54545455	0	0	NA	0	0	NA	1.57042276	1	0	0.42957724	1	1	0.57042276	unphased	0.87593246	0.87593246	1	0	1	0	0	2	3.86E-10	1	1	1	NA	NA	NA	NA
1351289	1206506166	PD9774b	1	180048951	T	C	CEP350	CCDS1336.1	r.?	-	-	intronic	29	0	0	58	8	13.79310345	0	0	NA	0	0	NA	1.57042276	1	0	0.42957724	1	1	0.57042276	unphased	0.830625609	0.830625609	1	0.0025	0.99625	0.00125	0	2	5.99E-10	1	1	1	NA	NA	NA	NA
1351289	1206506255	PD9774b	1	181223512	T	C	-	-	-	-	-	-	38	0	0	55	6	10.90909091	0	0	NA	0	0	NA	1.57042276	1	0	0.42957724	1	1	0.57042276	unphased	0.656949345	1.151688521	0.57042276	0	0.9975	0.0025	0	2	3.67E-07	1	1	1	NA	NA	NA	NA
1351289	1206506288	PD9774b	1	181922411	G	C	-	-	-	-	-	-	47	0	0	52	6	11.53846154	0	0	NA	2	0	0	1.57042276	1	0	0.42957724	1	1	0.57042276	unphased	0.694850269	1.21813209	0.57042276	0	0.9975	0.0025	0	2	2.61E-07	1	1	1	NA	NA	NA	NA
1351289	1206506441	PD9774b	1	183680532	G	C	RGL1	CCDS1359.1	r.?	-	-	intronic	37	0	0	47	7	14.89361702	0	0	NA	0	0	NA	1.57042276	1	0	0.42957724	1	1	0.57042276	unphased	0.896898929	0.896898929	1	0.00125	0.9975	0.00125	0	2	4.12E-09	1	1	1	NA	NA	NA	NA
1351289	1206506681	PD9774b	1	187267517	G	C	-	-	-	-	-	-	30	0	0	44	5	11.36363636	0	0	NA	0	0	NA	1.57042276	1	0	0.42957724	1	1	0.57042276	unphased	0.684322234	1.199675543	0.57042276	0.00125	0.9975	0.00125	0	2	2.88E-06	1	1	1	NA	NA	NA	NA
1351289	1206506720	PD9774b	1	187708624	T	C	-	-	-	-	-	-	32	0	0	51	5	9.803921569	0	0	NA	0	0	NA	1.57042276	1	0	0.42957724	1	1	0.57042276	unphased	0.590395653	1.035014194	0.57042276	0.00125	0.99875	0	0	2	6.06E-06	1	1	1	NA	NA	NA	NA
1351289	1206506763	PD9774b	1	188054953	T	C	-	-	-	-	-	-	39	0	0	49	5	10.20408163	0	0	NA	0	0	NA	1.57042276	1	0	0.42957724	1	1	0.57042276	unphased	0.614493435	1.077259671	0.57042276	0.0025	0.995	0.0025	0	2	4.96E-06	1	1	1	NA	NA	NA	NA
1351289	1206506971	PD9774b	1	191022540	G	C	-	-	-	-	-	-	31	0	0	37	5	13.51351351	0	0	NA	0	0	NA	1.57042276	1	0	0.42957724	1	1	0.57042276	unphased	0.813788603	0.813788603	1	0.00125	0.9975	0.00125	0	2	1.19E-06	1	1	1	NA	NA	NA	NA
1351289	1206507105	PD9774b	1	193122529	A	C	CDC73	CCDS1382.1	r.?	-	-	intronic	36	0	0	53	7	13.20754717	0	0	NA	0	0	NA	1.57042276	1	0	0.42957724	1	1	0.57042276	unphased	0.795363201	0.795363201	1	0.00125	0.99875	0	0	2	9.85E-09	1	1	1	NA	NA	NA	NA
1351289	1206507273	PD9774b	1	194957688	G	C	-	-	-	-	-	-	28	0	0	40	9	22.5	0	0	NA	0	0	NA	1.57042276	1	0	0.42957724	1	1	0.57042276	unphased	1.354958024	1.354958024	1	0	0.99875	0.00125	0	2	4.64E-13	1	1	1	NA	NA	NA	NA
1351289	1206507466	PD9774b	1	197293821	A	C	CRB1	CCDS1390.1	r.?	-	-	intronic	36	0	0	48	8	16.66666667	0	0	NA	0	0	NA	1.57042276	1	0	0.42957724	1	1	0.57042276	unphased	1.003672611	1.003672611	1	0	0.99875	0.00125	0	2	1.23E-10	1	1	1	NA	NA	NA	NA
1351289	1206507505	PD9774b	1	197818346	G	C	-	-	-	-	-	-	40	0	0	49	5	10.20408163	0	0	NA	0	0	NA	1.57042276	1	0	0.42957724	1	1	0.57042276	unphased	0.614493435	1.077259671	0.57042276	0	0.99875	0.00125	0	2	4.96E-06	1	1	1	NA	NA	NA	NA
1351289	1206507796	PD9774b	1	200915128	G	C	-	-	-	-	-	-	37	0	0	44	6	13.63636364	0	0	NA	0	0	NA	1.57042276	1	0	0.42957724	1	1	0.57042276	unphased	0.821186681	0.821186681	1	0.00125	0.99875	0	0	2	9.37E-08	1	1	1	NA	NA	NA	NA
1351289	1206507952	PD9774b	1	202533310	G	C	PPP1R12B	CCDS30973.1	r.?	-	-	intronic	44	0	0	68	11	16.17647059	0	0	NA	0	0	NA	1.57042276	1	0	0.42957724	1	1	0.57042276	unphased	0.974152828	0.974152828	1	0	0.9975	0.0025	0	2	5.76E-14	1	1	1	NA	NA	NA	NA
1351289	1206508041	PD9774b	1	203408001	G	C	-	-	-	-	-	-	36	0	0	52	6	11.53846154	0	0	NA	0	0	NA	1.57042276	1	0	0.42957724	1	1	0.57042276	unphased	0.694850269	1.21813209	0.57042276	0.0025	0.995	0.0025	0	2	2.61E-07	1	1	1	NA	NA	NA	NA
1351289	1206508456	PD9774b	1	208071008	T	C	CD34	CCDS31012.1	r.?	-	-	intronic	35	0	0	40	4	10	0	0	NA	0	0	NA	1.57042276	1	0	0.42957724	1	1	0.57042276	unphased	0.602203566	1.055714478	0.57042276	0	1	0	0	2	4.95E-05	1	1	1	NA	NA	NA	NA
1351289	1206508763	PD9774b	1	211879722	G	C	-	-	-	-	-	-	27	0	0	45	4	8.888888889	0	0	NA	0	0	NA	1.57042276	1	0	0.42957724	1	1	0.57042276	unphased	0.535292059	0.938412869	0.57042276	0.00125	0.99875	0	0	2	7.91E-05	1	1	1	NA	NA	NA	NA
1351289	1206508900	PD9774b	1	213135692	G	C	VASH2	CCDS1511.1	r.?	-	-	intronic	42	0	0	56	4	7.142857143	0	0	NA	0	0	NA	1.57042276	1	0	0.42957724	1	1	0.57042276	unphased	0.430145405	0.75408177	0.57042276	0	1	0	0	2	0.000186538	1	1	1	NA	NA	NA	NA
1351289	1206509064	PD9774b	1	215264127	T	C	KCNK2	CCDS41467.1	r.?	-	-	intronic	33	0	0	60	5	8.333333333	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.454301075	0.454301075	1	0.01375	0.98625	0	0	2	1.36E-05	1	1	1	NA	NA	NA	NA
1351289	1206509211	PD9774b	1	217380242	G	C	-	-	-	-	-	-	43	0	0	49	4	8.163265306	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.445029625	0.445029625	1	0.0075	0.9925	0	0	2	0.000110643	1	1	1	NA	NA	NA	NA
1351289	1206509559	PD9774b	1	221498749	T	C	-	-	-	-	-	-	36	0	0	55	5	9.090909091	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.495601173	0.495601173	1	0.005	0.995	0	0	2	8.83E-06	1	1	1	NA	NA	NA	NA
1351289	1206509916	PD9774b	1	225032751	G	C	-	-	-	-	-	-	28	0	0	60	6	10	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.54516129	0.54516129	1	0.005	0.995	0	0	2	6.21E-07	1	1	1	NA	NA	NA	NA
1351289	1206510004	PD9774b	1	226010969	G	C	EPHX1	CCDS1547.1	r.?	-	-	upstream	28	0	0	57	14	24.56140351	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.338992643	1.338992643	1	0	0.99625	0.00375	0	2	3.84E-20	1	1	1	NA	NA	NA	NA
1351289	1206510205	PD9774b	1	227593816	G	C	-	-	-	-	-	-	23	0	0	59	12	20.33898305	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.108802624	1.108802624	1	0	0.99875	0.00125	0	2	2.20E-16	1	1	1	NA	NA	NA	NA
1351289	1206510821	PD9774b	1	234690283	G	C	-	-	-	-	-	-	25	0	0	51	10	19.60784314	0	0	NA	0	0	NA	2.736337341	1	1	0.263662659	2	1	0.736337341	unphased	1.409402009	1.409402009	1	0	0.9975	0.0025	0	2	1.04E-13	1	1	1	NA	NA	NA	NA
1351289	1206511189	PD9774b	1	237782140	A	C	RYR2	ENST00000366574	r.?	-	-	intronic	41	0	0	75	9	12	0	0	NA	0	0	NA	2.736337341	1	1	0.263662659	2	1	0.736337341	unphased	0.862554029	0.862554029	1	0.0025	0.9975	0	0	2	1.82E-10	1	1	1	NA	NA	NA	NA
1351289	1206511369	PD9774b	1	239314073	T	C	-	-	-	-	-	-	35	0	0	69	11	15.94202899	0	0	NA	0	0	NA	2.736337341	1	1	0.263662659	2	1	0.736337341	unphased	1.145905111	1.145905111	1	0	0.99875	0.00125	0	2	6.82E-14	1	1	1	NA	NA	NA	NA
1351289	1206511425	PD9774b	1	239878777	A	C	CHRM3	CCDS1616.1	r.?	-	-	intronic	39	0	0	69	12	17.39130435	0	0	NA	0	0	NA	2.736337341	1	1	0.263662659	2	1	0.736337341	unphased	1.250078303	1.250078303	1	0.00125	0.9975	0.00125	0	2	1.65E-15	1	1	1	NA	NA	NA	NA
1351289	1206511445	PD9774b	1	240039242	T	C	CHRM3	CCDS1616.1	r.?	-	-	intronic	36	0	0	74	16	21.62162162	0	0	NA	0	0	NA	2.736337341	1	1	0.263662659	2	1	0.736337341	unphased	1.554151404	0.895074573	1.736337341	0.00125	0.99875	0	0	2	7.81E-22	1	1	1	NA	NA	NA	NA
1351289	1206511600	PD9774b	1	241182598	G	C	RGS7	CCDS31071.1	r.?	-	-	intronic	39	0	0	44	9	20.45454545	0	0	NA	0	0	NA	2.736337341	1	1	0.263662659	2	1	0.736337341	unphased	1.47026255	1.47026255	1	0	0.9975	0.0025	0	2	1.18E-12	1	1	1	NA	NA	NA	NA
1351289	1206511623	PD9774b	1	241346864	T	C	RGS7	CCDS31071.1	r.?	-	-	intronic	16	0	0	69	6	8.695652174	0	0	NA	0	0	NA	2.736337341	1	1	0.263662659	2	1	0.736337341	unphased	0.625039152	0.848848913	0.736337341	0.00125	0.99875	0	0	2	1.43E-06	1	1	1	NA	NA	NA	NA
1351289	1206511696	PD9774b	1	241923879	A	C	WDR64	ENST00000366552	r.?	-	-	intronic	23	0	0	45	10	22.22222222	0	0	NA	0	0	NA	2.736337341	1	1	0.263662659	2	1	0.736337341	unphased	1.597322277	1.597322277	1	0	0.9925	0.0075	0	2	2.66E-14	1	1	1	NA	NA	NA	NA
1351289	1206511758	PD9774b	1	242217157	T	C	-	-	-	-	-	-	41	0	0	61	12	19.67213115	0	0	NA	0	0	NA	2.736337341	1	1	0.263662659	2	1	0.736337341	unphased	1.414022999	1.414022999	1	0	0.9975	0.0025	0	2	3.39E-16	1	1	1	NA	NA	NA	NA
1351289	1206511862	PD9774b	1	242871034	T	C	-	-	-	-	-	-	36	0	0	54	11	20.37037037	0	0	NA	0	0	NA	2.736337341	1	1	0.263662659	2	1	0.736337341	unphased	1.464212087	1.464212087	1	0	0.9925	0.0075	0	2	3.84E-15	1	1	1	NA	NA	NA	NA
1351289	1206511895	PD9774b	1	243105875	T	C	-	-	-	-	-	-	38	0	0	49	14	28.57142857	0	0	NA	0	0	NA	2.736337341	1	1	0.263662659	2	1	0.736337341	unphased	2.05370007	1.182777114	1.736337341	0	0.9975	0.0025	0	2	3.50E-21	1	1	1	NA	NA	NA	NA
1351289	1206512039	PD9774b	1	244347491	T	C	-	-	-	-	-	-	25	0	0	66	6	9.090909091	0	0	NA	0	0	NA	2.736337341	1	1	0.263662659	2	1	0.736337341	unphased	0.653450022	0.887432954	0.736337341	0	0.9975	0.0025	0	2	1.10E-06	1	1	1	NA	NA	NA	NA
1351289	1206512372	PD9774b	1	246755425	G	C	CNST	CCDS1628.1	r.?	-	-	intronic	30	0	0	58	10	17.24137931	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	1.284760845	1.284760845	1	0	0.995	0.005	0	2	4.10E-13	1	1	1	NA	NA	NA	NA
1351289	1206512423	PD9774b	1	247039721	A	C	AHCTF1	CCDS1629.1	r.?	-	-	intronic	44	0	0	85	5	5.882352941	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	0.438330171	0.438330171	1	0.01875	0.98125	0	0	2	7.35E-05	1	1	1	NA	NA	NA	NA
1351289	1206512526	PD9774b	1	247793057	A	C	-	-	-	-	-	-	43	0	0	66	18	27.27272727	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	2.032258065	1.016129032	2	0	1	0	0	2	2.08E-26	1	1	1	NA	NA	NA	NA
1351289	1206512669	PD9774b	1	248625811	T	C	-	-	-	-	-	-	55	0	0	113	8	7.079646018	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	0.527547816	0.527547816	1	0.01	0.99	0	0	2	1.25E-07	1	1	1	NA	NA	NA	NA
1351289	1206512699	PD9774b	1	248858494	G	C	-	-	-	-	-	-	35	0	0	51	7	13.7254902	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	1.022770398	1.022770398	1	0	0.99875	0.00125	0	2	7.46E-09	1	1	1	NA	NA	NA	NA
1351289	1206513030	PD9774b	10	1530835	G	C	ADARB2	CCDS7058.1	r.?	-	-	intronic	31	0	0	55	7	12.72727273	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	0.948387097	0.948387097	1	0	1	0	0	2	1.28E-08	1	1	1	NA	NA	NA	NA
1351289	1206513134	PD9774b	10	1992407	G	C	-	-	-	-	-	-	36	0	0	72	15	20.83333333	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	1.552419355	0.776209677	2	0.00125	0.99875	0	0	2	2.70E-20	1	1	1	NA	NA	NA	NA
1351289	1206513432	PD9774b	10	4441452	G	C	-	-	-	-	-	-	35	0	0	62	5	8.064516129	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	0.600936524	0.600936524	1	0.00375	0.99625	0	0	2	1.60E-05	1	1	1	NA	NA	NA	NA
1351289	1206513577	PD9774b	10	5530723	G	C	-	-	-	-	-	-	39	0	0	58	4	6.896551724	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	0.513904338	0.513904338	1	0.00875	0.99125	0	0	2	0.000213772	1	1	1	NA	NA	NA	NA
1351289	1206513714	PD9774b	10	6358493	G	C	ENSG00000215244	ENST00000399868	r.?	-	-	intronic	37	0	0	57	4	7.01754386	2	0	0	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.427803286	0.663689045	0.64458392	0.0025	0.99625	0.00125	0	2	0.000199821	1	1	1	NA	NA	NA	NA
1351289	1206513800	PD9774b	10	6918236	G	C	-	-	-	-	-	-	30	0	0	58	9	15.51724138	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.945961576	0.945961576	1	0	1	0	0	2	1.67E-11	1	1	1	NA	NA	NA	NA
1351289	1206513938	PD9774b	10	7975785	T	C	TAF3	CCDS41487.1	r.?	-	-	intronic	34	0	0	76	7	9.210526316	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.561491813	0.871091871	0.64458392	0.005	0.995	0	0	2	1.26E-07	1	1	1	NA	NA	NA	NA
1351289	1206514037	PD9774b	10	8682508	G	C	-	-	-	-	-	-	25	0	0	65	9	13.84615385	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.844088791	0.844088791	1	0.0025	0.9975	0	0	2	4.85E-11	1	1	1	NA	NA	NA	NA
1351289	1206514509	PD9774b	10	12865380	G	C	CAMK1D	CCDS7091.1	r.?	-	-	intronic	35	0	0	54	10	18.51851852	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	1.128925338	1.128925338	1	0.00125	0.99875	0	0	2	1.91E-13	1	1	1	NA	NA	NA	NA
1351289	1206514751	PD9774b	10	14933634	A	C	SUV39H2	CCDS7104.1	r.?	-	-	intronic	23	0	0	65	6	9.230769231	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.562725861	0.873006359	0.64458392	0.00125	0.9975	0.00125	0	2	1.00E-06	1	1	1	NA	NA	NA	NA
1351289	1206514778	PD9774b	10	15104274	G	C	OLAH	CCDS7106.1	r.?	-	-	intronic	38	0	0	55	15	27.27272727	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	1.662599134	1.662599134	1	0	0.96375	0.03625	0	2	3.01E-22	1	1	1	NA	NA	NA	NA
1351289	1206514783	PD9774b	10	15186429	T	C	NMT2	CCDS7109.1	r.?	-	-	intronic	36	0	0	49	5	10.20408163	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.6220609	0.965058049	0.64458392	0.00125	0.9975	0.00125	0	2	4.96E-06	1	1	1	NA	NA	NA	NA
1351289	1206514826	PD9774b	10	15638704	A	C	ITGA8	CCDS31155.1	r.?	-	-	intronic	20	0	0	71	4	5.633802817	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.343447708	0.532820782	0.64458392	0.005	0.995	0	0	2	0.000464961	1	1	1	NA	NA	NA	NA
1351289	1206514831	PD9774b	10	15681547	G	C	ITGA8	CCDS31155.1	r.?	-	-	intronic	37	0	0	62	4	6.451612903	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.393303021	0.610165734	0.64458392	0.0075	0.9925	0	0	2	0.000276647	1	1	1	NA	NA	NA	NA
1351289	1206514853	PD9774b	10	15811634	G	C	-	-	-	-	-	-	42	0	0	49	14	28.57142857	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	1.741770521	1.741770521	1	0	0.9675	0.0325	0	2	3.50E-21	1	1	1	NA	NA	NA	NA
1351289	1206514888	PD9774b	10	16199336	G	C	-	-	-	-	-	-	30	0	0	58	4	6.896551724	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.420427367	0.65224613	0.64458392	0.0025	0.9975	0	0	2	0.000213772	1	1	1	NA	NA	NA	NA
1351289	1206514953	PD9774b	10	16967405	T	C	CUBN	CCDS7113.1	r.6547a>g	c.6481A>G	p.I2161V	missense	24	0	0	66	8	12.12121212	241	0	0	156	21	13.46153846	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.738932948	1.146371986	0.64458392	0.00125	0.99875	0	0	2	1.73E-09	1	1.36E-23	1	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206514956	PD9774b	10	16978533	G	C	CUBN	CCDS7113.1	r.?	-	-	intronic	34	0	0	59	7	11.86440678	186	1	0.537634409	191	14	7.329842932	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.723277589	1.122084444	0.64458392	0.00125	0.99875	0	0	2	2.12E-08	1	1.62E-12	0.606365624	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206515161	PD9774b	10	19265865	G	C	-	-	-	-	-	-	29	0	0	60	4	6.666666667	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.406413122	0.630504592	0.64458392	0.005	0.995	0	0	2	0.000243755	1	1	1	NA	NA	NA	NA
1351289	1206515166	PD9774b	10	19315534	G	C	-	-	-	-	-	-	31	0	0	68	4	5.882352941	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.358599813	0.556327581	0.64458392	0.0125	0.9875	0	0	2	0.000394372	1	1	1	NA	NA	NA	NA
1351289	1206515198	PD9774b	10	19652436	G	C	C10orf112	ENST00000377266	r.?	-	-	intronic	26	0	0	63	9	14.28571429	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.87088526	0.87088526	1	0	1	0	0	2	3.62E-11	1	1	1	NA	NA	NA	NA
1351289	1206515246	PD9774b	10	20151859	G	C	PLXDC2	CCDS7132.1	r.?	-	-	intronic	21	0	0	61	5	8.196721311	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.499688264	0.775210564	0.64458392	0.00375	0.99625	0	0	2	1.47E-05	1	1	1	NA	NA	NA	NA
1351289	1206515366	PD9774b	10	21658573	G	C	ENSG00000228017	ENST00000430722	r.?	-	-	intronic	41	0	0	66	6	9.090909091	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.554199711	0.85977899	0.64458392	0.0025	0.9975	0	0	2	1.10E-06	1	1	1	NA	NA	NA	NA
1351289	1206515483	PD9774b	10	22854786	T	C	PIP4K2A	CCDS7141.1	r.?	-	-	intronic	23	0	0	54	7	12.96296296	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.790247736	0.790247736	1	0.00125	0.99875	0	0	2	1.13E-08	1	1	1	NA	NA	NA	NA
1351289	1206515574	PD9774b	10	23865398	T	C	-	-	-	-	-	-	47	0	0	60	10	16.66666667	1	0	0	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	1.016032804	1.016032804	1	0	0.99625	0.00375	0	2	5.86E-13	1	1	1	NA	NA	NA	NA
1351289	1206515826	PD9774b	10	26668025	A	C	-	-	-	-	-	-	21	0	0	56	5	8.928571429	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.544303288	0.844425793	0.64458392	0	1	0	0	2	9.65E-06	1	1	1	NA	NA	NA	NA
1351289	1206516377	PD9774b	10	31482977	T	C	-	-	-	-	-	-	28	0	0	41	6	14.63414634	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.892126364	0.892126364	1	0.00125	0.99875	0	0	2	6.05E-08	1	1	1	NA	NA	NA	NA
1351289	1206516597	PD9774b	10	33831574	T	C	-	-	-	-	-	-	40	0	0	66	11	16.66666667	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	1.016032804	1.016032804	1	0	1	0	0	2	4.07E-14	1	1	1	NA	NA	NA	NA
1351289	1206516704	PD9774b	10	34986118	A	C	PARD3	CCDS7178.1	r.?	-	-	intronic	40	0	0	53	4	7.547169811	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.460090326	0.713778784	0.64458392	0.00375	0.99625	0	0	2	0.000150502	1	1	1	NA	NA	NA	NA
1351289	1206516733	PD9774b	10	35272124	G	C	-	-	-	-	-	-	35	0	0	63	15	23.80952381	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	1.451475434	1.451475434	1	0	0.995	0.005	0	2	2.97E-21	1	1	1	NA	NA	NA	NA
1351289	1206517027	PD9774b	10	38107154	T	C	-	-	-	-	-	-	30	0	0	44	8	18.18181818	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	1.108399422	1.108399422	1	0	0.9975	0.0025	0	2	5.90E-11	1	1	1	NA	NA	NA	NA
1351289	1206521636	PD9774b	10	49528023	G	C	MAPK8	CCDS7224.1	r.?	-	-	intronic	32	0	0	53	12	22.64150943	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	1.380270979	1.380270979	1	0	0.99375	0.00625	0	2	5.39E-17	1	1	1	NA	NA	NA	NA
1351289	1206521644	PD9774b	10	49585047	T	C	MAPK8	CCDS7224.1	r.?	-	-	intronic	32	0	0	46	7	15.2173913	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.927682125	0.927682125	1	0.00375	0.995	0.00125	0	2	3.53E-09	1	1	1	NA	NA	NA	NA
1351289	1206521696	PD9774b	10	50363847	G	C	C10orf128	CCDS41519.1	r.424c>g	c.?	p.?	3'UTR variant	34	0	0	44	7	15.90909091	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.969849495	0.969849495	1	0.00375	0.995	0.00125	0	2	2.55E-09	1	1	1	NA	NA	NA	NA
1351289	1206522144	PD9774b	10	56293352	T	C	PCDH15	CCDS44404.1	r.?	-	-	intronic	45	0	0	57	9	15.78947368	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.962557393	0.962557393	1	0	1	0	0	2	1.42E-11	1	1	1	NA	NA	NA	NA
1351289	1206522804	PD9774b	10	64062340	T	C	-	-	-	-	-	-	36	0	0	41	4	9.756097561	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.59475091	0.922689647	0.64458392	0.00125	0.9975	0.00125	0	2	5.46E-05	1	1	1	NA	NA	NA	NA
1351289	1206523281	PD9774b	10	69519756	G	C	-	-	-	-	-	-	46	0	0	36	5	13.88888889	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.846694003	0.846694003	1	0.0025	0.9975	0	0	2	1.04E-06	1	1	1	NA	NA	NA	NA
1351289	1206523537	PD9774b	10	72181666	G	C	EIF4EBP2	CCDS7303.1	r.549g>c	c.?	p.?	3'UTR variant	26	0	0	52	11	21.15384615	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.364764268	1.364764268	1	0	0.99625	0.00375	0	2	2.44E-15	1	1	1	NA	NA	NA	NA
1351289	1206523608	PD9774b	10	73109889	T	C	SLC29A3	CCDS7310.1	r.?	-	-	intronic	44	1	2.272727273	42	4	9.523809524	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.614439324	0.614439324	1	0.00875	0.99125	0	0	2	6.01E-05	0.197923942	1	1	NA	NA	NA	NA
1351289	1206523675	PD9774b	10	73861522	G	C	ASCC1	CCDS31219.1	r.?	-	-	intronic	26	0	0	60	5	8.333333333	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.537634409	0.537634409	1	0.0025	0.9975	0	0	2	1.36E-05	1	1	1	NA	NA	NA	NA
1351289	1206523951	PD9774b	10	77212137	G	C	C10orf11	ENST00000354343	r.?	-	-	intronic	31	0	0	42	6	14.28571429	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.921658986	0.921658986	1	0	0.99875	0.00125	0	2	7.02E-08	1	1	1	NA	NA	NA	NA
1351289	1206523969	PD9774b	10	77488010	T	C	C10orf11	ENST00000354343	r.?	-	-	intronic	36	0	0	61	7	11.47540984	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.740349022	0.740349022	1	0.00375	0.99625	0	0	2	2.69E-08	1	1	1	NA	NA	NA	NA
1351289	1206524177	PD9774b	10	81096440	G	C	-	-	-	-	-	-	21	0	0	52	14	26.92307692	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.736972705	1.736972705	1	0.00125	0.96375	0.035	0	2	9.04E-21	1	1	1	NA	NA	NA	NA
1351289	1206524330	PD9774b	10	82921234	T	C	-	-	-	-	-	-	30	0	0	59	9	15.25423729	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.984144341	0.984144341	1	0	1	0	0	2	1.96E-11	1	1	1	NA	NA	NA	NA
1351289	1206524335	PD9774b	10	82954666	G	C	-	-	-	-	-	-	36	0	0	58	8	13.79310345	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.889877642	0.889877642	1	0.00125	0.99875	0	0	2	5.99E-10	1	1	1	NA	NA	NA	NA
1351289	1206524348	PD9774b	10	83147304	G	C	-	-	-	-	-	-	28	0	0	42	11	26.19047619	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.689708141	1.689708141	1	0	0.985	0.015	0	2	1.81E-16	1	1	1	NA	NA	NA	NA
1351289	1206524641	PD9774b	10	87357662	A	C	GRID1	CCDS31236.1	r.?	-	-	downstream	30	0	0	41	5	12.19512195	0	0	NA	0	0	NA	0.742652787	0	0	0.257347213	1	0	0.742652787	unphased	0.633447035	0.852951806	0.742652787	0.0025	0.99625	0.00125	0	2	2.02E-06	1	1	1	NA	NA	NA	NA
1351289	1206524898	PD9774b	10	92007529	G	C	-	-	-	-	-	-	27	0	0	45	5	11.11111111	0	0	NA	0	0	NA	0.728995003	0	0	0.271004997	1	0	0.728995003	unphased	0.575623101	0.78961186	0.728995003	0.0025	0.9975	0	0	2	3.23E-06	1	1	1	NA	NA	NA	NA
1351289	1206524927	PD9774b	10	92472855	G	C	-	-	-	-	-	-	27	0	0	48	10	20.83333333	0	0	NA	0	0	NA	0.728995003	0	0	0.271004997	1	0	0.728995003	unphased	1.079293314	1.079293314	1	0.00125	0.99875	0	0	2	5.37E-14	1	1	1	NA	NA	NA	NA
1351289	1206525077	PD9774b	10	94474114	G	C	-	-	-	-	-	-	35	0	0	51	6	11.76470588	0	0	NA	0	0	NA	0.728995003	0	0	0.271004997	1	0	0.728995003	unphased	0.609483283	0.836059617	0.728995003	0.00125	0.9975	0.00125	0	2	2.32E-07	1	1	1	NA	NA	NA	NA
1351289	1206525307	PD9774b	10	96865068	G	C	-	-	-	-	-	-	40	0	0	42	4	9.523809524	0	0	NA	0	0	NA	0.728995003	0	0	0.271004997	1	0	0.728995003	unphased	0.493391229	0.676810166	0.728995003	0.00625	0.99375	0	0	2	6.01E-05	1	1	1	NA	NA	NA	NA
1351289	1206525494	PD9774b	10	99149347	G	C	RRP12	CCDS7457.1	r.?	-	-	intronic	30	0	0	46	5	10.86956522	0	0	NA	0	0	NA	0.728995003	0	0	0.271004997	1	0	0.728995003	unphased	0.563109555	0.772446385	0.728995003	0.00125	0.99875	0	0	2	3.61E-06	1	1	1	NA	NA	NA	NA
1351289	1206525833	PD9774b	10	103735016	T	C	C10orf76	CCDS41563.1	r.1568a>g	c.1448A>G	p.K483R	missense	35	0	0	44	4	9.090909091	0	0	NA	0	0	NA	0.728995003	0	0	0.271004997	1	0	0.728995003	unphased	0.470964355	0.646046067	0.728995003	0.0075	0.9925	0	0	2	7.23E-05	1	1	1	NA	NA	NA	NA
1351289	1206525880	PD9774b	10	104308776	G	C	SUFU	CCDS7537.1	r.?	-	-	intronic	34	0	0	33	6	18.18181818	0	0	NA	0	0	NA	0.728995003	0	0	0.271004997	1	0	0.728995003	unphased	0.94192871	0.94192871	1	0	1	0	0	2	1.54E-08	1	1	1	NA	NA	NA	NA
1351289	1206526186	PD9774b	10	108342775	A	C	SORCS1	CCDS7559.1	r.?	-	-	intronic	36	0	0	51	7	13.7254902	0	0	NA	0	0	NA	0.728995003	0	0	0.271004997	1	0	0.728995003	unphased	0.71106383	0.975402886	0.728995003	0.00125	0.9975	0.00125	0	2	7.46E-09	1	1	1	NA	NA	NA	NA
1351289	1206526267	PD9774b	10	109562980	G	C	-	-	-	-	-	-	38	0	0	52	8	15.38461538	0	0	NA	0	0	NA	0.728995003	0	0	0.271004997	1	0	0.728995003	unphased	0.797016601	1.09330873	0.728995003	0.0025	0.99375	0.00375	0	2	2.42E-10	1	1	1	NA	NA	NA	NA
1351289	1206526455	PD9774b	10	112469716	G	C	RBM20	CCDS44477.1	r.?	-	-	intronic	24	0	0	49	6	12.24489796	0	0	NA	0	0	NA	0.728995003	0	0	0.271004997	1	0	0.728995003	unphased	0.634360152	0.870184499	0.728995003	0.0025	0.99625	0.00125	0	2	1.82E-07	1	1	1	NA	NA	NA	NA
1351289	1206526623	PD9774b	10	115023548	G	C	-	-	-	-	-	-	36	0	0	62	8	12.90322581	0	0	NA	0	0	NA	0.728995003	0	0	0.271004997	1	0	0.728995003	unphased	0.668465536	0.916968612	0.728995003	0.00125	0.9975	0.00125	0	2	1.04E-09	1	1	1	NA	NA	NA	NA
1351289	1206526870	PD9774b	10	118564831	A	C	-	-	-	-	-	-	25	0	0	41	6	14.63414634	0	0	NA	0	0	NA	0.728995003	0	0	0.271004997	1	0	0.728995003	unphased	0.758137742	1.039976596	0.728995003	0.00125	0.99875	0	0	2	6.05E-08	1	1	1	NA	NA	NA	NA
1351289	1206527336	PD9774b	10	124554542	T	C	-	-	-	-	-	-	22	0	0	26	7	26.92307692	0	0	NA	0	0	NA	0.728995003	0	0	0.271004997	1	0	0.728995003	unphased	1.394779052	1.394779052	1	0	0.9925	0.0075	0	2	4.73E-11	1	1	1	NA	NA	NA	NA
1351289	1206527497	PD9774b	10	126747011	G	C	CTBP2	CCDS7643.1	r.?	-	-	intronic	41	0	0	48	4	8.333333333	0	0	NA	0	0	NA	0.728995003	0	0	0.271004997	1	0	0.728995003	unphased	0.431717326	0.592208895	0.728995003	0.00625	0.99375	0	0	2	0.000102016	1	1	1	NA	NA	NA	NA
1351289	1206529416	PD9774b	11	2109341	T	C	-	-	-	-	-	-	32	0	0	30	4	13.33333333	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.72688172	0.72688172	1	0.00125	0.99875	0	0	2	1.54E-05	1	1	1	NA	NA	NA	NA
1351289	1206529738	PD9774b	11	5312174	G	C	HBG2	CCDS7755.1	r.?	-	-	intronic	34	0	0	63	4	6.349206349	0	0	NA	0	0	NA	0.502376961	0	0	0.497623039	1	0	0.502376961	unphased	0.314539039	0.626101639	0.502376961	0.0025	0.9975	0	0	2	0.000294233	1	1	1	NA	NA	NA	NA
1351289	1206529795	PD9774b	11	5699797	G	C	TRIM5	CCDS31394.1	r.?	-	-	intronic	35	0	0	49	9	18.36734694	0	0	NA	0	0	NA	0.502376961	0	0	0.497623039	1	0	0.502376961	unphased	0.909916506	0.909916506	1	0.00125	0.9975	0.00125	0	2	3.35E-12	1	1	1	NA	NA	NA	NA
1351289	1206529958	PD9774b	11	7960213	G	C	OR10A3	CCDS31421.1	r.855c>g	c.855C>G	p.L285L	silent	40	0	0	50	10	20	284	0	0	420	86	20.47619048	1.258735013	1	0	0.741264987	2	0	0.258735013	unphased	1.142069583	1.142069583	1	0	0.99875	0.00125	0	2	8.36E-14	1	3.49E-108	1	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206530096	PD9774b	11	9488709	G	C	ZNF143	CCDS7799.2	r.?	-	-	intronic	42	0	0	53	5	9.433962264	0	0	NA	0	0	NA	1.258735013	1	0	0.741264987	2	0	0.258735013	unphased	0.538712068	0.538712068	1	0.005	0.995	0	0	2	7.34E-06	1	1	1	NA	NA	NA	NA
1351289	1206530201	PD9774b	11	10720622	A	C	-	-	-	-	-	-	36	0	0	45	5	11.11111111	0	0	NA	0	0	NA	1.258735013	1	0	0.741264987	2	0	0.258735013	unphased	0.634483102	0.634483102	1	0.0025	0.99625	0.00125	0	2	3.23E-06	1	1	1	NA	NA	NA	NA
1351289	1206530413	PD9774b	11	13250587	G	C	-	-	-	-	-	-	29	0	0	66	7	10.60606061	0	0	NA	0	0	NA	2	2	0	1	NA	NA	NA	unphased	0.684261975	0.684261975	1	0.00375	0.99625	0	0	2	4.70E-08	1	1	1	NA	NA	NA	NA
1351289	1206530627	PD9774b	11	16389460	T	C	SOX6	CCDS7821.1	r.?	-	-	intronic	34	0	0	58	5	8.620689655	0	0	NA	0	0	NA	1.228568745	1	0	0.771431255	2	0	0.228568745	unphased	0.489670832	0.489670832	1	0.01125	0.98875	0	0	2	1.15E-05	1	1	1	NA	NA	NA	NA
1351289	1206530722	PD9774b	11	17931088	T	C	SERGEF	CCDS7828.1	r.?	-	-	intronic	36	0	0	44	7	15.90909091	0	0	NA	0	0	NA	1.228568745	1	0	0.771431255	2	0	0.228568745	unphased	0.903665262	0.903665262	1	0.00125	0.99875	0	0	2	2.55E-09	1	1	1	NA	NA	NA	NA
1351289	1206531111	PD9774b	11	22415830	G	C	-	-	-	-	-	-	32	0	0	50	4	8	0	0	NA	0	0	NA	1.203721092	1	0	0.796278908	2	0	0.203721092	unphased	0.45242672	0.45242672	1	0.01375	0.98625	0	0	2	0.000119787	1	1	1	NA	NA	NA	NA
1351289	1206531195	PD9774b	11	23282940	G	C	-	-	-	-	-	-	31	0	0	57	4	7.01754386	0	0	NA	0	0	NA	1.203721092	1	0	0.796278908	2	0	0.203721092	unphased	0.396865543	0.396865543	1	0.015	0.985	0	0	2	0.000199821	1	1	1	NA	NA	NA	NA
1351289	1206531288	PD9774b	11	24254287	A	C	-	-	-	-	-	-	35	0	0	54	8	14.81481481	0	0	NA	0	0	NA	1.203721092	1	0	0.796278908	2	0	0.203721092	unphased	0.837827258	0.837827258	1	0.00125	0.99875	0	0	2	3.31E-10	1	1	1	NA	NA	NA	NA
1351289	1206531357	PD9774b	11	25026393	T	C	LUZP2	CCDS31446.1	r.?	-	-	intronic	35	0	0	45	6	13.33333333	0	0	NA	0	0	NA	1.203721092	1	0	0.796278908	2	0	0.203721092	unphased	0.754044533	0.754044533	1	0.0025	0.9975	0	0	2	1.08E-07	1	1	1	NA	NA	NA	NA
1351289	1206531580	PD9774b	11	27154059	T	C	BBOX1	CCDS7862.1	r.?	-	-	downstream	29	1	3.448275862	42	12	28.57142857	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	2.129032258	1.064516129	2	0	1	0	0	2	2.35E-18	0.135292269	1	1	NA	NA	NA	NA
1351289	1206531778	PD9774b	11	29866273	G	C	-	-	-	-	-	-	39	0	0	49	12	24.48979592	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	1.824884793	0.912442396	2	0.00125	0.99875	0	0	2	1.90E-17	1	1	1	NA	NA	NA	NA
1351289	1206531793	PD9774b	11	30098301	T	C	-	-	-	-	-	-	32	0	0	66	5	7.575757576	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	0.564516129	0.564516129	1	0.005	0.995	0	0	2	2.17E-05	1	1	1	NA	NA	NA	NA
1351289	1206532032	PD9774b	11	33272929	T	C	-	-	-	-	-	-	38	0	0	59	19	32.20338983	272	0	0	170	25	14.70588235	3	2	1	1	NA	NA	NA	unphased	2.399671952	1.199835976	2	0	0.9975	0.0025	0	2	2.20E-29	1	8.62E-29	1	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206532347	PD9774b	11	36059986	G	C	LDLRAD3	CCDS31462.1	r.?	-	-	intronic	36	0	0	51	4	7.843137255	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	0.584440228	0.584440228	1	0.005	0.995	0	0	2	0.000129466	1	1	1	NA	NA	NA	NA
1351289	1206532366	PD9774b	11	36238137	A	C	LDLRAD3	CCDS31462.1	r.?	-	-	intronic	23	0	0	59	4	6.779661017	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	0.505194095	0.505194095	1	0.005	0.99375	0.00125	0	2	0.00022841	1	1	1	NA	NA	NA	NA
1351289	1206532372	PD9774b	11	36288539	G	C	C11orf55	ENST00000355500	r.?	-	-	downstream	29	0	0	54	8	14.81481481	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	1.103942652	1.103942652	1	0.00125	0.99875	0	0	2	3.31E-10	1	1	1	NA	NA	NA	NA
1351289	1206532384	PD9774b	11	36496256	T	C	-	-	-	-	-	-	48	0	0	47	9	19.14893617	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	1.426904598	1.426904598	1	0	0.99625	0.00375	0	2	2.24E-12	1	1	1	NA	NA	NA	NA
1351289	1206532412	PD9774b	11	36903646	G	C	-	-	-	-	-	-	37	0	0	47	4	8.510638298	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	0.634179822	0.634179822	1	0.0025	0.9975	0	0	2	9.39E-05	1	1	1	NA	NA	NA	NA
1351289	1206532659	PD9774b	11	39679165	G	C	-	-	-	-	-	-	47	0	0	41	5	12.19512195	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	0.908733281	0.908733281	1	0	0.99875	0.00125	0	2	2.02E-06	1	1	1	NA	NA	NA	NA
1351289	1206532728	PD9774b	11	40331433	G	C	-	-	-	-	-	-	31	0	0	58	13	22.4137931	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	1.670189099	0.835094549	2	0.0025	0.9975	0	0	2	3.12E-18	1	1	1	NA	NA	NA	NA
1351289	1206532742	PD9774b	11	40458548	T	C	-	-	-	-	-	-	44	0	0	57	5	8.771929825	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	0.653650255	0.653650255	1	0.005	0.995	0	0	2	1.05E-05	1	1	1	NA	NA	NA	NA
1351289	1206532780	PD9774b	11	41125369	T	C	-	-	-	-	-	-	30	0	0	47	10	21.27659574	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	1.585449554	1.585449554	1	0	0.99	0.01	0	2	4.27E-14	1	1	1	NA	NA	NA	NA
1351289	1206532898	PD9774b	11	42853071	T	C	-	-	-	-	-	-	26	0	0	51	7	13.7254902	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	1.022770398	1.022770398	1	0.0025	0.99375	0.00375	0	2	7.46E-09	1	1	1	NA	NA	NA	NA
1351289	1206532940	PD9774b	11	43357174	A	C	API5	CCDS44572.1	r.?	-	-	intronic	30	0	0	56	8	14.28571429	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	1.064516129	1.064516129	1	0	0.9975	0.0025	0	2	4.48E-10	1	1	1	NA	NA	NA	NA
1351289	1206532998	PD9774b	11	44077585	T	C	ACCSL	CCDS41636.1	r.1196-5u>c	c.1140-5T>C	p.?	splice region	38	0	0	61	7	11.47540984	280	1	0.357142857	65	4	6.153846154	3	2	1	1	NA	NA	NA	unphased	0.85510312	0.85510312	1	0	1	0	0	2	2.69E-08	1	0.000331785	0.754267494	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206533073	PD9774b	11	44846444	A	C	-	-	-	-	-	-	35	0	0	39	4	10.25641026	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	0.76426799	0.76426799	1	0.0025	0.9975	0	0	2	4.47E-05	1	1	1	NA	NA	NA	NA
1351289	1206533307	PD9774b	11	47589541	G	C	PTPMT1	CCDS44593.1	r.?	-	-	intronic	34	0	0	50	5	10	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.44516129	0.44516129	1	0.0125	0.9875	0	0	2	5.49E-06	1	1	1	NA	NA	NA	NA
1351289	1206534045	PD9774b	11	49210291	T	C	FOLH1	CCDS7946.1	r.?	-	-	intronic	23	0	0	38	4	10.52631579	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.468590832	0.468590832	1	0.01	0.99	0	0	2	4.03E-05	1	1	1	NA	NA	NA	NA
1351289	1206535166	PD9774b	11	55515011	G	C	-	-	-	-	-	-	25	0	0	35	6	17.14285714	0	0	NA	0	0	NA	1.485754291	1	0	0.514245709	1	1	0.485754291	unphased	1.017834376	1.017834376	1	0.00125	0.9975	0.00125	0	2	2.24E-08	1	1	1	NA	NA	NA	NA
1351289	1206535175	PD9774b	11	55614278	T	C	-	-	-	-	-	-	44	0	0	60	14	23.33333333	0	0	NA	0	0	NA	1.485754291	1	0	0.514245709	1	1	0.485754291	unphased	1.385385679	1.385385679	1	0	0.99375	0.00625	0	2	8.54E-20	1	1	1	NA	NA	NA	NA
1351289	1206535192	PD9774b	11	55769829	T	C	-	-	-	-	-	-	36	0	0	62	5	8.064516129	0	0	NA	0	0	NA	1.485754291	1	0	0.514245709	1	1	0.485754291	unphased	0.478819935	0.98572456	0.485754291	0	1	0	0	2	1.60E-05	1	1	1	NA	NA	NA	NA
1351289	1206535304	PD9774b	11	56583698	G	C	-	-	-	-	-	-	35	0	0	47	11	23.40425532	0	0	NA	0	0	NA	1.485754291	1	0	0.514245709	1	1	0.485754291	unphased	1.389596577	1.389596577	1	0	0.995	0.005	0	2	7.21E-16	1	1	1	NA	NA	NA	NA
1351289	1206535401	PD9774b	11	57856605	T	C	OR9Q1	CCDS31543.1	r.?	-	-	intronic	34	0	0	46	10	21.73913043	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.18513324	1.18513324	1	0	0.995	0.005	0	2	3.38E-14	1	1	1	NA	NA	NA	NA
1351289	1206535414	PD9774b	11	58011310	G	C	-	-	-	-	-	-	32	0	0	51	9	17.64705882	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.962049336	0.962049336	1	0.0025	0.9975	0	0	2	4.92E-12	1	1	1	NA	NA	NA	NA
1351289	1206535473	PD9774b	11	58653415	T	C	-	-	-	-	-	-	34	0	0	46	9	19.56521739	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.066619916	1.066619916	1	0.00125	0.9975	0.00125	0	2	1.82E-12	1	1	1	NA	NA	NA	NA
1351289	1206535507	PD9774b	11	59176465	G	C	-	-	-	-	-	-	43	0	0	48	9	18.75	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.022177419	1.022177419	1	0.00125	0.99875	0	0	2	2.75E-12	1	1	1	NA	NA	NA	NA
1351289	1206535572	PD9774b	11	60079441	T	C	MS4A4A	CCDS7982.1	r.?	-	-	downstream	25	0	0	42	7	16.66666667	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.908602151	0.908602151	1	0.00125	0.99875	0	0	2	1.81E-09	1	1	1	NA	NA	NA	NA
1351289	1206535958	PD9774b	11	64449037	G	C	NRXN2	CCDS8077.1	r.?	-	-	intronic	25	0	0	58	16	27.5862069	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.503893215	1.503893215	1	0	0.9925	0.0075	0	2	1.00E-23	1	1	1	NA	NA	NA	NA
1351289	1206536451	PD9774b	11	68918025	T	C	-	-	-	-	-	-	33	0	0	42	14	33.33333333	0	0	NA	0	0	NA	1.26776812	1	0	0.73223188	2	0	0.26776812	unphased	1.906460341	1.503792618	1.26776812	0	0.9875	0.0125	0	2	2.83E-22	1	1	1	NA	NA	NA	NA
1351289	1206536558	PD9774b	11	69796591	A	C	-	-	-	-	-	-	28	0	0	46	10	21.73913043	0	0	NA	0	0	NA	1.26776812	1	0	0.73223188	2	0	0.26776812	unphased	1.243343701	1.243343701	1	0	0.99375	0.00625	0	2	3.38E-14	1	1	1	NA	NA	NA	NA
1351289	1206536617	PD9774b	11	70438119	T	C	SHANK2	ENST00000338508	r.?	-	-	intronic	23	0	0	50	14	28	0	0	NA	0	0	NA	1.26776812	1	0	0.73223188	2	0	0.26776812	unphased	1.601426687	1.263185799	1.26776812	0.00125	0.99875	0	0	2	4.84E-21	1	1	1	NA	NA	NA	NA
1351289	1206536659	PD9774b	11	70832303	A	C	SHANK2	ENST00000338508	r.?	-	-	intronic	31	0	0	46	11	23.91304348	0	0	NA	0	0	NA	1.26776812	1	0	0.73223188	2	0	0.26776812	unphased	1.367678071	1.367678071	1	0	0.995	0.005	0	2	5.55E-16	1	1	1	NA	NA	NA	NA
1351289	1206537002	PD9774b	11	74424876	A	C	CHRDL2	CCDS8234.1	r.?	-	-	intronic	36	0	0	59	11	18.6440678	0	0	NA	0	0	NA	1.26776812	1	0	0.73223188	2	0	0.26776812	unphased	1.066325276	1.066325276	1	0	1	0	0	2	1.10E-14	1	1	1	NA	NA	NA	NA
1351289	1206537330	PD9774b	11	78810189	G	C	ODZ4	CCDS44688.1	r.?	-	-	intronic	30	0	0	44	9	20.45454545	0	0	NA	0	0	NA	1.26776812	1	0	0.73223188	2	0	0.26776812	unphased	1.169873391	1.169873391	1	0	0.9975	0.0025	0	2	1.18E-12	1	1	1	NA	NA	NA	NA
1351289	1206537607	PD9774b	11	82761760	T	C	RAB30	CCDS8264.1	r.?	-	-	intronic	37	0	0	55	15	27.27272727	0	0	NA	0	0	NA	1.26776812	1	0	0.73223188	2	0	0.26776812	unphased	1.559831188	1.230375779	1.26776812	0	0.99875	0.00125	0	2	3.01E-22	1	1	1	NA	NA	NA	NA
1351289	1206537713	PD9774b	11	83896688	G	C	DLG2	CCDS41696.1	r.?	-	-	intronic	26	0	0	51	4	7.843137255	0	0	NA	0	0	NA	1.26776812	1	0	0.73223188	2	0	0.26776812	unphased	0.448578904	0.448578904	1	0.01	0.99	0	0	2	0.000129466	1	1	1	NA	NA	NA	NA
1351289	1206538052	PD9774b	11	88526546	T	C	GRM5	CCDS44694.1	r.?	-	-	intronic	38	0	0	43	6	13.95348837	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.760690173	0.760690173	1	0.0025	0.99625	0.00125	0	2	8.13E-08	1	1	1	NA	NA	NA	NA
1351289	1206538090	PD9774b	11	89028354	A	C	TYR	CCDS8284.1	r.1492a>c	c.1410A>C	p.Q470H	missense	29	0	0	43	6	13.95348837	218	0	0	354	40	11.29943503	1	1	0	1	NA	NA	NA	unphased	0.760690173	0.760690173	1	0.00125	0.99875	0	0	2	8.13E-08	1	2.22E-40	1	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206538270	PD9774b	11	91226972	T	C	-	-	-	-	-	-	25	0	0	54	8	14.81481481	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.807646356	0.807646356	1	0.0025	0.9975	0	0	2	3.31E-10	1	1	1	NA	NA	NA	NA
1351289	1206538576	PD9774b	11	95301706	T	C	-	-	-	-	-	-	42	0	0	48	11	22.91666667	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.249327957	1.249327957	1	0	0.9975	0.0025	0	2	9.31E-16	1	1	1	NA	NA	NA	NA
1351289	1206538692	PD9774b	11	96687789	G	C	-	-	-	-	-	-	24	0	0	45	4	8.888888889	0	0	NA	0	0	NA	1.238591577	1	0	0.761408423	2	0	0.238591577	unphased	0.505795954	0.505795954	1	0.00875	0.99125	0	0	2	7.91E-05	1	1	1	NA	NA	NA	NA
1351289	1206538757	PD9774b	11	97472582	A	C	-	-	-	-	-	-	29	0	0	52	5	9.615384615	122	0	0	89	7	7.865168539	1.238591577	1	0	0.761408423	2	0	0.238591577	unphased	0.547135046	0.547135046	1	0.00875	0.99125	0	0	2	6.68E-06	1	3.76E-07	1	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206538883	PD9774b	11	98832488	A	C	-	-	-	-	-	-	30	0	0	56	9	16.07142857	0	0	NA	0	0	NA	1.238591577	1	0	0.761408423	2	0	0.238591577	unphased	0.914497149	0.914497149	1	0	0.99875	0.00125	0	2	1.20E-11	1	1	1	NA	NA	NA	NA
1351289	1206538894	PD9774b	11	98934334	T	C	-	-	-	-	-	-	34	0	0	50	11	22	0	0	NA	0	0	NA	1.238591577	1	0	0.761408423	2	0	0.238591577	unphased	1.251844986	1.251844986	1	0	0.9975	0.0025	0	2	1.52E-15	1	1	1	NA	NA	NA	NA
1351289	1206539155	PD9774b	11	101938576	T	C	C11orf70	CCDS8313.1	r.?	-	-	intronic	45	0	0	59	15	25.42372881	0	0	NA	0	0	NA	1.238591577	1	0	0.761408423	2	0	0.238591577	unphased	1.446662156	1.446662156	1	0	0.99	0.01	0	2	9.90E-22	1	1	1	NA	NA	NA	NA
1351289	1206539292	PD9774b	11	103284031	A	C	DYNC2H1	CCDS44717.1	r.?	-	-	intronic	29	0	0	58	12	20.68965517	0	0	NA	0	0	NA	1.238591577	1	0	0.761408423	2	0	0.238591577	unphased	1.177283685	1.177283685	1	0	0.99875	0.00125	0	2	1.76E-16	1	1	1	NA	NA	NA	NA
1351289	1206539385	PD9774b	11	104606554	T	C	-	-	-	-	-	-	33	0	0	72	21	29.16666667	0	0	NA	0	0	NA	1.238591577	1	0	0.761408423	2	0	0.238591577	unphased	1.659642973	1.339943695	1.238591577	0	0.9975	0.0025	0	2	2.89E-31	1	1	1	NA	NA	NA	NA
1351289	1206539549	PD9774b	11	107157000	T	C	-	-	-	-	-	-	32	0	0	53	17	32.0754717	0	0	NA	0	0	NA	1.238591577	1	0	0.761408423	2	0	0.238591577	unphased	1.825159927	1.473576893	1.238591577	0	0.98625	0.01375	0	2	2.08E-26	1	1	1	NA	NA	NA	NA
1351289	1206539643	PD9774b	11	108220167	G	C	ATM	CCDS31669.1	r.?	-	-	intronic	25	0	0	62	16	25.80645161	0	0	NA	0	0	NA	1.238591577	1	0	0.761408423	2	0	0.238591577	unphased	1.468439866	1.468439866	1	0	0.99	0.01	0	2	3.36E-23	1	1	1	NA	NA	NA	NA
1351289	1206539887	PD9774b	11	111420204	A	C	LAYN	CCDS31676.1	r.?	-	-	intronic	26	0	0	61	18	29.50819672	0	0	NA	0	0	NA	1.238591577	1	0	0.761408423	2	0	0.238591577	unphased	1.679076732	1.355633902	1.238591577	0	0.99125	0.00875	0	2	4.08E-27	1	1	1	NA	NA	NA	NA
1351289	1206540023	PD9774b	11	113109728	G	C	NCAM1	ENST00000316851	r.?	-	-	intronic	33	0	0	41	9	21.95121951	0	0	NA	0	0	NA	1.238591577	1	0	0.761408423	2	0	0.238591577	unphased	1.249069276	1.249069276	1	0	0.99375	0.00625	0	2	5.92E-13	1	1	1	NA	NA	NA	NA
1351289	1206540319	PD9774b	11	116552351	G	C	-	-	-	-	-	-	29	0	0	43	4	9.302325581	0	0	NA	0	0	NA	1.238591577	1	0	0.761408423	2	0	0.238591577	unphased	0.529321347	0.529321347	1	0.00625	0.99375	0	0	2	6.60E-05	1	1	1	NA	NA	NA	NA
1351289	1206540427	PD9774b	11	117761993	G	C	-	-	-	-	-	-	31	0	0	60	8	13.33333333	0	0	NA	0	0	NA	1.238591577	1	0	0.761408423	2	0	0.238591577	unphased	0.758693931	0.758693931	1	0	1	0	0	2	7.93E-10	1	1	1	NA	NA	NA	NA
1351289	1206540472	PD9774b	11	118236393	A	C	UBE4A	CCDS8396.1	r.?	-	-	intronic	35	0	0	79	5	6.329113924	0	0	NA	0	0	NA	1.238591577	1	0	0.761408423	2	0	0.238591577	unphased	0.360139524	1.509439391	0.238591577	0.00125	0.995	0.00375	0	2	5.18E-05	1	1	1	NA	NA	NA	NA
1351289	1206540619	PD9774b	11	119335166	G	C	AP003395.1	ENST00000498979	r.?	-	-	intronic	35	0	0	66	6	9.090909091	0	0	NA	0	0	NA	1.238591577	1	0	0.761408423	2	0	0.238591577	unphased	0.517291316	0.517291316	1	0.01875	0.98125	0	0	2	1.10E-06	1	1	1	NA	NA	NA	NA
1351289	1206540970	PD9774b	11	122624093	A	C	UBASH3B	CCDS31694.1	r.?	-	-	intronic	20	0	0	36	15	41.66666667	0	0	NA	0	0	NA	1.238591577	1	0	0.761408423	2	0	0.238591577	unphased	2.370918533	1.914205278	1.238591577	0	0.8725	0.1275	0	2	1.54E-25	1	1	1	NA	NA	NA	NA
1351289	1206541054	PD9774b	11	123367784	G	C	-	-	-	-	-	-	38	0	0	54	10	18.51851852	0	0	NA	0	0	NA	1.238591577	1	0	0.761408423	2	0	0.238591577	unphased	1.05374157	1.05374157	1	0.00125	0.9975	0.00125	0	2	1.91E-13	1	1	1	NA	NA	NA	NA
1351289	1206541155	PD9774b	11	124355740	G	C	-	-	-	-	-	-	35	0	0	53	9	16.98113208	0	0	NA	0	0	NA	1.238591577	1	0	0.761408423	2	0	0.238591577	unphased	0.966261138	0.966261138	1	0	1	0	0	2	7.10E-12	1	1	1	NA	NA	NA	NA
1351289	1206541503	PD9774b	11	129463037	G	C	-	-	-	-	-	-	32	0	0	52	14	26.92307692	240	0	0	140	17	12.14285714	1.238591577	1	0	0.761408423	2	0	0.238591577	unphased	1.531978129	1.531978129	1	0	0.99	0.01	0	2	9.04E-21	1	1.33E-18	1	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206541595	PD9774b	11	130861768	T	C	-	-	-	-	-	-	28	0	0	58	10	17.24137931	0	0	NA	0	0	NA	1.238591577	1	0	0.761408423	2	0	0.238591577	unphased	0.981069738	0.981069738	1	0	1	0	0	2	4.10E-13	1	1	1	NA	NA	NA	NA
1351289	1206542049	PD9774b	12	733380	G	C	NINJ2	CCDS8505.1	r.?	-	-	intronic	48	0	0	49	6	12.24489796	0	0	NA	0	0	NA	2	2	0	1	NA	NA	NA	unphased	0.789993417	0.789993417	1	0	1	0	0	2	1.82E-07	1	1	1	NA	NA	NA	NA
1351289	1206542403	PD9774b	12	4042473	T	C	-	-	-	-	-	-	35	0	0	50	4	8	0	0	NA	0	0	NA	2	2	0	1	NA	NA	NA	unphased	0.516129032	0.516129032	1	0.005	0.995	0	0	2	0.000119787	1	1	1	NA	NA	NA	NA
1351289	1206542786	PD9774b	12	7502954	G	C	CD163L1	CCDS8577.1	r.?	-	-	downstream	42	0	0	50	7	14	0	0	NA	0	0	NA	2	2	0	1	NA	NA	NA	unphased	0.903225806	0.903225806	1	0.0025	0.9975	0	0	2	6.46E-09	1	1	1	NA	NA	NA	NA
1351289	1206542894	PD9774b	12	8331921	G	C	ZNF705A	CCDS31737.1	r.2717g>c	c.?	p.?	3'UTR variant	23	0	0	37	9	24.32432432	0	0	NA	0	0	NA	2	2	0	1	NA	NA	NA	unphased	1.569311247	1.569311247	1	0	0.995	0.005	0	2	2.14E-13	1	1	1	NA	NA	NA	NA
1351289	1206542965	PD9774b	12	8693120	A	C	CLEC4E	CCDS8594.1	r.?	-	-	intronic	31	0	0	62	17	27.41935484	0	0	NA	0	0	NA	2	2	0	1	NA	NA	NA	unphased	1.768990635	0.884495317	2	0	1	0	0	2	4.56E-25	1	1	1	NA	NA	NA	NA
1351289	1206543051	PD9774b	12	9546404	T	C	-	-	-	-	-	-	32	0	0	53	7	13.20754717	0	0	NA	0	0	NA	2	2	0	1	NA	NA	NA	unphased	0.852099817	0.852099817	1	0	1	0	0	2	9.85E-09	1	1	1	NA	NA	NA	NA
1351289	1206543061	PD9774b	12	9582489	G	C	DDX12	ENST00000290818	r.?	-	-	intronic	38	0	0	54	10	18.51851852	200	0	0	53	8	15.09433962	2	2	0	1	NA	NA	NA	unphased	1.19474313	1.19474313	1	0.00125	0.99375	0.005	0	2	1.91E-13	1	2.83E-10	1	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206543620	PD9774b	12	14689618	G	C	PLBD1	CCDS31751.1	r.746c>g	c.585C>G	p.F195L	missense	36	0	0	35	8	22.85714286	270	0	0	209	23	11.00478469	1.283669778	1	0	0.716330222	2	0	0.283669778	unphased	1.310921756	1.310921756	1	0	0.99875	0.00125	0	2	8.15E-12	1	1.24E-23	1	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206543726	PD9774b	12	15804470	G	C	EPS8	CCDS31753.1	r.?	-	-	intronic	29	0	0	52	14	26.92307692	0	0	NA	0	0	NA	1.283669778	1	0	0.716330222	2	0	0.283669778	unphased	1.544114568	1.544114568	1	0	0.9875	0.0125	0	2	9.04E-21	1	1	1	NA	NA	NA	NA
1351289	1206543788	PD9774b	12	16688903	A	C	-	-	-	-	-	-	33	0	0	45	13	28.88888889	0	0	NA	0	0	NA	1.283669778	1	0	0.716330222	2	0	0.283669778	unphased	1.656859441	1.290720923	1.283669778	0	0.995	0.005	0	2	7.68E-20	1	1	1	NA	NA	NA	NA
1351289	1206543841	PD9774b	12	17297826	T	C	-	-	-	-	-	-	44	0	0	57	13	22.80701754	0	0	NA	0	0	NA	1.283669778	1	0	0.716330222	2	0	0.283669778	unphased	1.308046927	1.308046927	1	0	0.9925	0.0075	0	2	2.44E-18	1	1	1	NA	NA	NA	NA
1351289	1206544142	PD9774b	12	20885119	A	C	SLCO1C1	CCDS8683.1	r.?	-	-	intronic	22	0	0	57	4	7.01754386	0	0	NA	0	0	NA	1.283669778	1	0	0.716330222	2	0	0.283669778	unphased	0.402475978	1.418818672	0.283669778	0	0.9975	0.0025	0	2	0.000199821	1	1	1	NA	NA	NA	NA
1351289	1206544159	PD9774b	12	21066042	G	C	SLCO1B3	CCDS8684.1	r.?	-	-	intronic	39	0	0	44	12	27.27272727	0	0	NA	0	0	NA	1.283669778	1	0	0.716330222	2	0	0.283669778	unphased	1.564168004	1.564168004	1	0	0.985	0.015	0	2	4.44E-18	1	1	1	NA	NA	NA	NA
1351289	1206544191	PD9774b	12	21586007	G	C	PYROXD1	CCDS31755.1	r.?	-	-	upstream	41	0	0	57	8	14.03508772	0	0	NA	0	0	NA	1.283669778	1	0	0.716330222	2	0	0.283669778	unphased	0.804951955	0.804951955	1	0.00125	0.99875	0	0	2	5.19E-10	1	1	1	NA	NA	NA	NA
1351289	1206544253	PD9774b	12	22434898	G	C	ST8SIA1	CCDS8697.1	r.?	-	-	intronic	33	0	0	61	7	11.47540984	0	0	NA	0	0	NA	1.283669778	1	0	0.716330222	2	0	0.283669778	unphased	0.658147193	0.658147193	1	0.0075	0.9925	0	0	2	2.69E-08	1	1	1	NA	NA	NA	NA
1351289	1206544402	PD9774b	12	24320752	T	C	-	-	-	-	-	-	33	0	0	55	10	18.18181818	0	0	NA	0	0	NA	1.283669778	1	0	0.716330222	2	0	0.283669778	unphased	1.042778669	1.042778669	1	0.00125	0.99625	0.0025	0	2	2.33E-13	1	1	1	NA	NA	NA	NA
1351289	1206544598	PD9774b	12	26544688	G	C	ITPR2	CCDS41764.1	r.?	-	-	intronic	32	0	0	51	10	19.60784314	0	0	NA	0	0	NA	1.283669778	1	0	0.716330222	2	0	0.283669778	unphased	1.124565232	1.124565232	1	0	0.99875	0.00125	0	2	1.04E-13	1	1	1	NA	NA	NA	NA
1351289	1206544902	PD9774b	12	29719258	G	C	TMTC1	CCDS8718.1	r.?	-	-	intronic	29	0	0	55	4	7.272727273	0	0	NA	0	0	NA	1.283669778	1	0	0.716330222	2	0	0.283669778	unphased	0.417111468	1.470412078	0.283669778	0.005	0.9925	0.0025	0	2	0.000173903	1	1	1	NA	NA	NA	NA
1351289	1206545130	PD9774b	12	32459720	G	C	BICD1	CCDS8726.1	r.?	-	-	intronic	28	0	0	47	4	8.510638298	2	0	0	0	0	NA	1.283669778	1	0	0.716330222	2	0	0.283669778	unphased	0.488109164	0.488109164	1	0.01	0.98875	0.00125	0	2	9.39E-05	1	1	1	NA	NA	NA	NA
1351289	1206545186	PD9774b	12	32944795	G	C	PKP2	CCDS8731.1	r.3324c>g	c.?	p.?	3'UTR variant	31	0	0	41	7	17.07317073	0	0	NA	0	0	NA	1.283669778	1	0	0.716330222	2	0	0.283669778	unphased	0.979194604	0.979194604	1	0.00125	0.99875	0	0	2	1.51E-09	1	1	1	NA	NA	NA	NA
1351289	1206546706	PD9774b	12	39193303	G	C	CPNE8	CCDS8733.1	r.?	-	-	intronic	36	0	0	46	6	13.04347826	0	0	NA	0	0	NA	0.857682244	0	0	0.142317756	1	0	0.857682244	unphased	0.692516758	0.807428116	0.857682244	0	1	0	0	2	1.23E-07	1	1	1	NA	NA	NA	NA
1351289	1206546715	PD9774b	12	39281822	G	C	CPNE8	CCDS8733.1	r.?	-	-	intronic	37	0	0	51	13	25.49019608	0	0	NA	0	0	NA	0.857682244	0	0	0.142317756	1	0	0.857682244	unphased	1.353349743	1.353349743	1	0	0.9975	0.0025	0	2	4.87E-19	1	1	1	NA	NA	NA	NA
1351289	1206546746	PD9774b	12	39698309	A	C	KIF21A	CCDS31773.1	r.?	-	-	intronic	46	0	0	45	3	6.666666667	0	0	NA	0	0	NA	0.857682244	0	0	0.142317756	1	0	0.857682244	unphased	0.35395301	0.412685481	0.857682244	0.0175	0.9825	0	0	2	0.001516071	1	1	1	NA	NA	NA	NA
1351289	1206546759	PD9774b	12	39860728	T	C	-	-	-	-	-	-	33	0	0	32	9	28.125	0	0	NA	0	0	NA	0.857682244	0	0	0.142317756	1	0	0.857682244	unphased	1.49323926	1.49323926	1	0	0.99	0.01	0	2	4.94E-14	1	1	1	NA	NA	NA	NA
1351289	1206546796	PD9774b	12	40282690	A	C	SLC2A13	CCDS8736.2	r.?	-	-	intronic	40	0	0	48	12	25	0	0	NA	0	0	NA	0.857682244	0	0	0.142317756	1	0	0.857682244	unphased	1.327323787	1.327323787	1	0	0.9925	0.0075	0	2	1.44E-17	1	1	1	NA	NA	NA	NA
1351289	1206547101	PD9774b	12	43883281	A	C	ADAMTS20	ENST00000389420	r.?	-	-	intronic	29	0	0	59	10	16.94915254	0	0	NA	0	0	NA	0.857682244	0	0	0.142317756	1	0	0.857682244	unphased	0.899880533	1.049200376	0.857682244	0	0.9975	0.0025	0	2	4.91E-13	1	1	1	NA	NA	NA	NA
1351289	1206547114	PD9774b	12	44026098	G	C	-	-	-	-	-	-	35	0	0	50	10	20	0	0	NA	0	0	NA	0.857682244	0	0	0.142317756	1	0	0.857682244	unphased	1.061859029	1.061859029	1	0	0.99875	0.00125	0	2	8.36E-14	1	1	1	NA	NA	NA	NA
1351289	1206547139	PD9774b	12	44371825	G	C	TMEM117	CCDS8745.1	r.?	-	-	intronic	42	0	0	52	5	9.615384615	0	0	NA	0	0	NA	0.857682244	0	0	0.142317756	1	0	0.857682244	unphased	0.510509149	0.595219444	0.857682244	0.01	0.99	0	0	2	6.68E-06	1	1	1	NA	NA	NA	NA
1351289	1206547491	PD9774b	12	49111608	G	C	CCNT1	CCDS8766.1	r.?	-	-	upstream	38	0	0	49	7	14.28571429	0	0	NA	0	0	NA	0.857682244	0	0	0.142317756	1	0	0.857682244	unphased	0.758470735	0.884326032	0.857682244	0	1	0	0	2	5.58E-09	1	1	1	NA	NA	NA	NA
1351289	1206547818	PD9774b	12	52879568	T	C	KRT6A	CCDS41786.1	r.?	-	-	downstream	29	0	0	38	4	10.52631579	0	0	NA	0	0	NA	0.857682244	0	0	0.142317756	1	0	0.857682244	unphased	0.558873173	0.651608655	0.857682244	0.0025	0.9975	0	0	2	4.03E-05	1	1	1	NA	NA	NA	NA
1351289	1206548207	PD9774b	12	56330594	T	C	DGKA	CCDS8896.1	r.?	-	-	intronic	41	0	0	42	7	16.66666667	0	0	NA	0	0	NA	0.857682244	0	0	0.142317756	1	0	0.857682244	unphased	0.884882525	1.031713703	0.857682244	0	0.9975	0.0025	0	2	1.81E-09	1	1	1	NA	NA	NA	NA
1351289	1206548939	PD9774b	12	66358858	T	C	HMGA2	CCDS44936.1	r.2927u>c	c.?	p.?	3'UTR variant	46	0	0	54	7	12.96296296	0	0	NA	0	0	NA	0.857682244	0	0	0.142317756	1	0	0.857682244	unphased	0.688241964	0.802443992	0.857682244	0.00125	0.99875	0	0	2	1.13E-08	1	1	1	NA	NA	NA	NA
1351289	1206549363	PD9774b	12	70964741	G	C	PTPRB	CCDS44943.1	r.?	-	-	intronic	34	0	0	73	14	19.17808219	0	0	NA	0	0	NA	0.853446383	0	0	0.146553617	1	0	0.853446383	unphased	1.01740863	1.01740863	1	0	1	0	0	2	1.71E-18	1	1	1	NA	NA	NA	NA
1351289	1206549371	PD9774b	12	71200196	G	C	PTPRR	CCDS8998.1	r.?	-	-	intronic	30	0	0	44	5	11.36363636	0	0	NA	0	0	NA	0.853446383	0	0	0.146553617	1	0	0.853446383	unphased	0.602847646	0.706368506	0.853446383	0.005	0.995	0	0	2	2.88E-06	1	1	1	NA	NA	NA	NA
1351289	1206549476	PD9774b	12	73090506	G	C	-	-	-	-	-	-	34	0	0	49	8	16.32653061	0	0	NA	0	0	NA	0.853446383	0	0	0.146553617	1	0	0.853446383	unphased	0.866132128	1.014864139	0.853446383	0	1	0	0	2	1.47E-10	1	1	1	NA	NA	NA	NA
1351289	1206549482	PD9774b	12	73186561	G	C	-	-	-	-	-	-	27	0	0	43	5	11.62790698	0	0	NA	0	0	NA	0.853446383	0	0	0.146553617	1	0	0.853446383	unphased	0.616867359	0.72279568	0.853446383	0.00125	0.99875	0	0	2	2.57E-06	1	1	1	NA	NA	NA	NA
1351289	1206550334	PD9774b	12	85913331	G	C	-	-	-	-	-	-	37	0	0	50	7	14	0	0	NA	0	0	NA	0.853446383	0	0	0.146553617	1	0	0.853446383	unphased	0.7427083	0.870245999	0.853446383	0	1	0	0	2	6.46E-09	1	1	1	NA	NA	NA	NA
1351289	1206550385	PD9774b	12	86727227	T	C	-	-	-	-	-	-	33	0	0	34	7	20.58823529	0	0	NA	0	0	NA	0.853446383	0	0	0.146553617	1	0	0.853446383	unphased	1.092218088	1.092218088	1	0.00125	0.9975	0.00125	0	2	3.73E-10	1	1	1	NA	NA	NA	NA
1351289	1206550496	PD9774b	12	88148496	A	C	-	-	-	-	-	-	34	0	0	47	4	8.510638298	0	0	NA	0	0	NA	0.853446383	0	0	0.146553617	1	0	0.853446383	unphased	0.451494407	0.529024924	0.853446383	0.00625	0.99375	0	0	2	9.39E-05	1	1	1	NA	NA	NA	NA
1351289	1206550612	PD9774b	12	89924679	T	C	WDR51B	CCDS31869.1	r.?	-	-	upstream	34	0	0	58	14	24.13793103	0	0	NA	0	0	NA	0.853446383	0	0	0.146553617	1	0	0.853446383	unphased	1.280531552	1.280531552	1	0	0.9925	0.0075	0	2	5.04E-20	1	1	1	NA	NA	NA	NA
1351289	1206550763	PD9774b	12	91747473	G	C	-	-	-	-	-	-	33	0	0	56	16	28.57142857	0	0	NA	0	0	NA	0.853446383	0	0	0.146553617	1	0	0.853446383	unphased	1.515731225	1.515731225	1	0	0.98875	0.01125	0	2	5.26E-24	1	1	1	NA	NA	NA	NA
1351289	1206551513	PD9774b	12	101884020	A	C	SPIC	CCDS9082.1	r.?	-	-	downstream	39	0	0	51	10	19.60784314	0	0	NA	0	0	NA	0.853446383	0	0	0.146553617	1	0	0.853446383	unphased	1.040207703	1.040207703	1	0	0.99875	0.00125	0	2	1.04E-13	1	1	1	NA	NA	NA	NA
1351289	1206551608	PD9774b	12	103133428	G	C	-	-	-	-	-	-	31	0	0	47	4	8.510638298	0	0	NA	0	0	NA	0.853446383	0	0	0.146553617	1	0	0.853446383	unphased	0.451494407	0.529024924	0.853446383	0.00375	0.99625	0	0	2	9.39E-05	1	1	1	NA	NA	NA	NA
1351289	1206551612	PD9774b	12	103209334	T	C	-	-	-	-	-	-	46	0	0	41	6	14.63414634	0	0	NA	0	0	NA	0.853446383	0	0	0.146553617	1	0	0.853446383	unphased	0.776350139	0.909664808	0.853446383	0.0025	0.9975	0	0	2	6.05E-08	1	1	1	NA	NA	NA	NA
1351289	1206552046	PD9774b	12	109532517	A	C	UNG	CCDS9125.1	r.?	-	-	upstream	32	0	0	43	6	13.95348837	0	0	NA	0	0	NA	0.853446383	0	0	0.146553617	1	0	0.853446383	unphased	0.740240831	0.867354817	0.853446383	0	1	0	0	2	8.13E-08	1	1	1	NA	NA	NA	NA
1351289	1206552542	PD9774b	12	115658902	T	C	-	-	-	-	-	-	45	0	0	48	4	8.333333333	0	0	NA	0	0	NA	0.853446383	0	0	0.146553617	1	0	0.853446383	unphased	0.442088274	0.518003571	0.853446383	0.005	0.995	0	0	2	0.000102016	1	1	1	NA	NA	NA	NA
1351289	1206552658	PD9774b	12	117399296	G	C	FBXW8	CCDS9182.1	r.?	-	-	intronic	32	0	0	47	4	8.510638298	0	0	NA	0	0	NA	0.853446383	0	0	0.146553617	1	0	0.853446383	unphased	0.451494407	0.529024924	0.853446383	0.00375	0.99625	0	0	2	9.39E-05	1	1	1	NA	NA	NA	NA
1351289	1206552733	PD9774b	12	118410348	A	C	KSR2	ENST00000425217	r.?	-	-	upstream	27	0	0	44	5	11.36363636	0	0	NA	0	0	NA	0.853446383	0	0	0.146553617	1	0	0.853446383	unphased	0.602847646	0.706368506	0.853446383	0.00125	0.99875	0	0	2	2.88E-06	1	1	1	NA	NA	NA	NA
1351289	1206552920	PD9774b	12	120618934	A	C	GCN1L1	CCDS41847.1	r.?	-	-	intronic	35	0	0	44	6	13.63636364	0	0	NA	0	0	NA	0.853446383	0	0	0.146553617	1	0	0.853446383	unphased	0.723417175	0.847642207	0.853446383	0.00125	0.99875	0	0	2	9.37E-08	1	1	1	NA	NA	NA	NA
1351289	1206553158	PD9774b	12	123096815	G	C	KNTC1	CCDS45002.1	r.?	-	-	intronic	18	0	0	40	5	12.5	0	0	NA	0	0	NA	0.853446383	0	0	0.146553617	1	0	0.853446383	unphased	0.663132411	0.777005356	0.853446383	0.00125	0.99875	0	0	2	1.78E-06	1	1	1	NA	NA	NA	NA
1351289	1206553438	PD9774b	12	125721639	T	C	-	-	-	-	-	-	27	0	0	41	6	14.63414634	0	0	NA	0	0	NA	0.853446383	0	0	0.146553617	1	0	0.853446383	unphased	0.776350139	0.909664808	0.853446383	0.0025	0.9975	0	0	2	6.05E-08	1	1	1	NA	NA	NA	NA
1351289	1206553768	PD9774b	12	129243151	G	C	-	-	-	-	-	-	40	0	0	62	9	14.51612903	0	0	NA	1	0	0	0.853446383	0	0	0.146553617	1	0	0.853446383	unphased	0.770089251	0.902328801	0.853446383	0.00125	0.99875	0	0	2	3.12E-11	1	1	1	NA	NA	NA	NA
1351289	1206553909	PD9774b	12	130517394	G	C	ENSG00000214039	ENST00000397340	r.?	-	-	downstream	29	0	0	60	7	11.66666667	0	0	NA	0	0	NA	0.853446383	0	0	0.146553617	1	0	0.853446383	unphased	0.618923583	0.725204999	0.853446383	0.0025	0.9975	0	0	2	2.39E-08	1	1	1	NA	NA	NA	NA
1351289	1206554066	PD9774b	12	131836136	G	C	AC140118.1	ENST00000428272	r.?	-	-	intronic	40	0	0	36	5	13.88888889	0	0	NA	0	0	NA	0.853446383	0	0	0.146553617	1	0	0.853446383	unphased	0.73681379	0.863339285	0.853446383	0.00125	0.9975	0.00125	0	2	1.04E-06	1	1	1	NA	NA	NA	NA
1351289	1206554699	PD9774b	13	19613896	G	C	-	-	-	-	-	-	34	0	0	51	6	11.76470588	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.523719165	0.523719165	1	0.0075	0.9925	0	0	2	2.32E-07	1	1	1	NA	NA	NA	NA
1351289	1206554816	PD9774b	13	20192855	A	C	-	-	-	-	-	-	34	0	0	48	4	8.333333333	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.370967742	0.370967742	1	0.0275	0.9725	0	0	2	0.000102016	1	1	1	NA	NA	NA	NA
1351289	1206554925	PD9774b	13	20877067	G	C	-	-	-	-	-	-	28	0	0	55	8	14.54545455	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.647507331	0.647507331	1	0.01	0.99	0	0	2	3.86E-10	1	1	1	NA	NA	NA	NA
1351289	1206554990	PD9774b	13	21663680	A	C	-	-	-	-	-	-	51	0	0	47	4	8.510638298	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.378860673	0.378860673	1	0.025	0.975	0	0	2	9.39E-05	1	1	1	NA	NA	NA	NA
1351289	1206555010	PD9774b	13	21811818	G	C	-	-	-	-	-	-	32	0	0	54	5	9.259259259	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.41218638	0.41218638	1	0.02375	0.97625	0	0	2	8.06E-06	1	1	1	NA	NA	NA	NA
1351289	1206555125	PD9774b	13	22997079	G	C	-	-	-	-	-	-	40	0	0	47	5	10.63829787	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.473575841	0.473575841	1	0.01375	0.98625	0	0	2	4.02E-06	1	1	1	NA	NA	NA	NA
1351289	1206555351	PD9774b	13	25168686	T	C	-	-	-	-	-	-	45	0	0	56	7	12.5	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.556451613	0.556451613	1	0.0075	0.9925	0	0	2	1.46E-08	1	1	1	NA	NA	NA	NA
1351289	1206555475	PD9774b	13	26255886	T	C	ATP8A2	CCDS41873.1	r.?	-	-	intronic	43	0	0	50	5	10	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.44516129	0.44516129	1	0.0225	0.9775	0	0	2	5.49E-06	1	1	1	NA	NA	NA	NA
1351289	1206555755	PD9774b	13	29459012	T	C	-	-	-	-	-	-	35	0	0	44	9	20.45454545	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.910557185	0.910557185	1	0	1	0	0	2	1.18E-12	1	1	1	NA	NA	NA	NA
1351289	1206555829	PD9774b	13	30358370	G	C	UBL3	CCDS9334.1	r.?	-	-	intronic	32	0	0	57	5	8.771929825	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.39049236	0.39049236	1	0.02625	0.97375	0	0	2	1.05E-05	1	1	1	NA	NA	NA	NA
1351289	1206556343	PD9774b	13	37528973	G	C	ALG5	CCDS9361.1	r.?	-	-	intronic	38	0	0	53	9	16.98113208	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.755934267	0.755934267	1	0.00125	0.99875	0	0	2	7.10E-12	1	1	1	NA	NA	NA	NA
1351289	1206556651	PD9774b	13	41574128	T	C	ELF1	CCDS9374.1	r.?	-	-	intronic	32	0	0	45	4	8.888888889	0	0	NA	0	0	NA	0.412209864	0	0	0.587790136	1	0	0.412209864	unphased	0.432339801	1.048834198	0.412209864	0.0025	0.995	0.0025	0	2	7.91E-05	1	1	1	NA	NA	NA	NA
1351289	1206556968	PD9774b	13	45985355	G	C	SLC25A30	CCDS31967.1	r.?	-	-	intronic	29	0	0	58	5	8.620689655	0	0	NA	0	0	NA	0.412209864	0	0	0.587790136	1	0	0.412209864	unphased	0.419295066	1.017188338	0.412209864	0	0.99875	0.00125	0	2	1.15E-05	1	1	1	NA	NA	NA	NA
1351289	1206557168	PD9774b	13	48581193	A	C	-	-	-	-	-	-	32	0	0	39	4	10.25641026	0	0	NA	0	0	NA	0.412209864	0	0	0.587790136	1	0	0.412209864	unphased	0.498853617	1.210193305	0.412209864	0.00125	0.9975	0.00125	0	2	4.47E-05	1	1	1	NA	NA	NA	NA
1351289	1206557348	PD9774b	13	51233645	T	C	-	-	-	-	-	-	36	0	0	50	6	12	0	0	NA	0	0	NA	0.412209864	0	0	0.587790136	1	0	0.412209864	unphased	0.583658732	1.415926167	0.412209864	0.00125	0.995	0.00375	0	2	2.06E-07	1	1	1	NA	NA	NA	NA
1351289	1206558446	PD9774b	13	64802446	A	C	-	-	-	-	-	-	41	0	0	58	5	8.620689655	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.46996663	0.46996663	1	0.00625	0.99375	0	0	2	1.15E-05	1	1	1	NA	NA	NA	NA
1351289	1206558873	PD9774b	13	69797763	G	C	-	-	-	-	-	-	31	0	0	42	5	11.9047619	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.649001536	0.649001536	1	0.00375	0.99625	0	0	2	2.28E-06	1	1	1	NA	NA	NA	NA
1351289	1206558925	PD9774b	13	70366593	A	C	KLHL1	CCDS9445.1	r.?	-	-	intronic	30	0	0	54	4	7.407407407	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.403823178	0.403823178	1	0.0225	0.9775	0	0	2	0.000161898	1	1	1	NA	NA	NA	NA
1351289	1206559513	PD9774b	13	77629887	T	C	MYCBP2	CCDS31994.1	r.13430a>g	c.13339A>G	p.I4447V	missense	29	0	0	42	6	14.28571429	186	1	0.537634409	243	27	11.11111111	1	1	0	1	NA	NA	NA	unphased	0.778801843	0.778801843	1	0.00625	0.99375	0	0	2	7.02E-08	1	1.39E-27	0.606365624	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206559661	PD9774b	13	79642298	T	C	-	-	-	-	-	-	39	0	0	41	13	31.70731707	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.728560189	1.728560189	1	0	0.9725	0.02625	0.00125	2	1.89E-20	1	1	1	NA	NA	NA	NA
1351289	1206559796	PD9774b	13	81626582	G	C	-	-	-	-	-	-	42	0	0	46	4	8.695652174	0	0	NA	1	0	0	1	1	0	1	NA	NA	NA	unphased	0.474053296	0.474053296	1	0.0125	0.98625	0.00125	0	2	8.62E-05	1	1	1	NA	NA	NA	NA
1351289	1206559873	PD9774b	13	82403281	G	C	-	-	-	-	-	-	25	0	0	53	8	15.09433962	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.822884967	0.822884967	1	0.0025	0.9975	0	0	2	2.83E-10	1	1	1	NA	NA	NA	NA
1351289	1206560648	PD9774b	13	92736818	G	C	GPC5	CCDS9468.1	r.?	-	-	intronic	35	0	0	52	6	11.53846154	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.629032258	0.629032258	1	0.0075	0.9925	0	0	2	2.61E-07	1	1	1	NA	NA	NA	NA
1351289	1206560672	PD9774b	13	93061643	A	C	GPC5	CCDS9468.1	r.?	-	-	intronic	32	0	0	48	4	8.333333333	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.454301075	0.454301075	1	0.01375	0.98625	0	0	2	0.000102016	1	1	1	NA	NA	NA	NA
1351289	1206560676	PD9774b	13	93164988	T	C	GPC5	CCDS9468.1	r.?	-	-	intronic	37	0	0	35	7	20	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.090322581	1.090322581	1	0.00125	0.99625	0.0025	0	2	4.65E-10	1	1	1	NA	NA	NA	NA
1351289	1206560933	PD9774b	13	96895151	G	C	HS6ST3	CCDS9481.1	r.?	-	-	intronic	29	0	0	56	7	12.5	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.681451613	0.681451613	1	0.00375	0.99625	0	0	2	1.46E-08	1	1	1	NA	NA	NA	NA
1351289	1206561148	PD9774b	13	99784638	T	C	-	-	-	-	-	-	34	0	0	51	6	11.76470588	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.641366224	0.641366224	1	0.0025	0.9975	0	0	2	2.32E-07	1	1	1	NA	NA	NA	NA
1351289	1206561169	PD9774b	13	100007092	T	C	UBAC2	CCDS9490.1	r.?	-	-	intronic	28	0	0	49	7	14.28571429	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.778801843	0.778801843	1	0.0025	0.99625	0.00125	0	2	5.58E-09	1	1	1	NA	NA	NA	NA
1351289	1206561289	PD9774b	13	101198148	G	C	A2LD1	CCDS45066.1	r.?	-	-	intronic	28	0	0	49	4	8.163265306	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.445029625	0.445029625	1	0.00875	0.99125	0	0	2	0.000110643	1	1	1	NA	NA	NA	NA
1351289	1206561401	PD9774b	13	103090277	T	C	-	-	-	-	-	-	40	0	0	44	4	9.090909091	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.495601173	0.495601173	1	0.005	0.995	0	0	2	7.23E-05	1	1	1	NA	NA	NA	NA
1351289	1206561436	PD9774b	13	103441842	A	C	KDELC1	CCDS9504.1	r.?	-	-	intronic	45	0	0	46	4	8.695652174	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.474053296	0.474053296	1	0.015	0.985	0	0	2	8.62E-05	1	1	1	NA	NA	NA	NA
1351289	1206561509	PD9774b	13	104622922	A	C	-	-	-	-	-	-	24	0	0	22	5	22.72727273	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.239002933	1.239002933	1	0.0025	0.9925	0.005	0	2	7.67E-08	1	1	1	NA	NA	NA	NA
1351289	1206561585	PD9774b	13	105654449	T	C	-	-	-	-	-	-	39	0	0	47	5	10.63829787	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.579958819	0.579958819	1	0.005	0.995	0	0	2	4.02E-06	1	1	1	NA	NA	NA	NA
1351289	1206561930	PD9774b	13	110267961	T	C	-	-	-	-	-	-	38	0	0	47	7	14.89361702	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.811942347	0.811942347	1	0	1	0	0	2	4.12E-09	1	1	1	NA	NA	NA	NA
1351289	1206562115	PD9774b	13	112309939	A	C	ENSG00000204398	ENST00000375713	r.?	-	-	intronic	32	0	0	48	6	12.5	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.681451613	0.681451613	1	0.00125	0.99875	0	0	2	1.60E-07	1	1	1	NA	NA	NA	NA
1351289	1206563655	PD9774b	14	21186271	G	C	-	-	-	-	-	-	38	0	0	47	9	19.14893617	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.235415237	1.235415237	1	0	0.995	0.005	0	2	2.24E-12	1	1	1	NA	NA	NA	NA
1351289	1206563714	PD9774b	14	21650160	G	C	-	-	-	-	-	-	38	0	0	53	4	7.547169811	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.486914181	0.486914181	1	0.00625	0.99375	0	0	2	0.000150502	1	1	1	NA	NA	NA	NA
1351289	1206564002	PD9774b	14	24974673	G	C	CMA1	CCDS9630.1	r.823c>g	c.?	p.?	3'UTR variant	34	0	0	49	6	12.24489796	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.789993417	0.789993417	1	0.00125	0.99875	0	0	2	1.82E-07	1	1	1	NA	NA	NA	NA
1351289	1206564353	PD9774b	14	28342011	T	C	-	-	-	-	-	-	41	0	0	55	11	20	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.290322581	1.290322581	1	0	0.99625	0.0025	0.00125	2	4.77E-15	1	1	1	NA	NA	NA	NA
1351289	1206564416	PD9774b	14	29314746	G	C	-	-	-	-	-	-	29	0	0	61	13	21.31147541	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.374933897	1.374933897	1	0	0.99875	0.00125	0	2	6.41E-18	1	1	1	NA	NA	NA	NA
1351289	1206564434	PD9774b	14	29667123	G	C	-	-	-	-	-	-	39	0	0	46	6	13.04347826	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.841514727	0.841514727	1	0.00125	0.99875	0	0	2	1.23E-07	1	1	1	NA	NA	NA	NA
1351289	1206564474	PD9774b	14	30280276	G	C	PRKD1	CCDS9637.1	r.?	-	-	intronic	34	0	0	41	5	12.19512195	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.786782061	0.786782061	1	0.00125	0.99875	0	0	2	2.02E-06	1	1	1	NA	NA	NA	NA
1351289	1206564950	PD9774b	14	35777253	G	C	PSMA6	CCDS9655.1	r.250g>c	c.130G>C	p.G44R	missense	39	0	0	57	7	12.28070175	230	0	0	93	3	3.225806452	2	1	1	1	NA	NA	NA	unphased	0.792303339	0.792303339	1	0.00375	0.99625	0	0	2	1.66E-08	1	0.011611924	1	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206565079	PD9774b	14	37104750	G	C	-	-	-	-	-	-	34	0	0	77	10	12.98701299	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.837871806	0.837871806	1	0.00125	0.99875	0	0	2	7.90E-12	1	1	1	NA	NA	NA	NA
1351289	1206565358	PD9774b	14	40363241	T	C	-	-	-	-	-	-	32	0	0	53	5	9.433962264	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.608642727	0.608642727	1	0.01125	0.98875	0	0	2	7.34E-06	1	1	1	NA	NA	NA	NA
1351289	1206565542	PD9774b	14	42631862	G	C	-	-	-	-	-	-	35	0	0	47	4	8.510638298	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.549073439	0.549073439	1	0.00875	0.99125	0	0	2	9.39E-05	1	1	1	NA	NA	NA	NA
1351289	1206565568	PD9774b	14	42946072	A	C	-	-	-	-	-	-	32	0	0	41	7	17.07317073	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.101494886	1.101494886	1	0	0.99875	0.00125	0	2	1.51E-09	1	1	1	NA	NA	NA	NA
1351289	1206565630	PD9774b	14	43672274	A	C	-	-	-	-	-	-	37	0	0	46	5	10.86956522	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.701262272	0.701262272	1	0	1	0	0	2	3.61E-06	1	1	1	NA	NA	NA	NA
1351289	1206565821	PD9774b	14	46181031	G	C	-	-	-	-	-	-	30	0	0	61	8	13.1147541	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.846113168	0.846113168	1	0.00125	0.99875	0	0	2	9.09E-10	1	1	1	NA	NA	NA	NA
1351289	1206565832	PD9774b	14	46349539	G	C	-	-	-	-	-	-	42	0	0	45	8	17.77777778	2	0	0	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.146953405	1.146953405	1	0.00125	0.99875	0	0	2	7.14E-11	1	1	1	NA	NA	NA	NA
1351289	1206565985	PD9774b	14	48077484	G	C	MDGA2	CCDS45098.1	r.?	-	-	intronic	40	0	0	55	6	10.90909091	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.703812317	0.703812317	1	0.0025	0.99625	0.00125	0	2	3.67E-07	1	1	1	NA	NA	NA	NA
1351289	1206566052	PD9774b	14	48846271	G	C	-	-	-	-	-	-	37	0	0	67	6	8.955223881	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.577756379	0.577756379	1	0.00625	0.99375	0	0	2	1.20E-06	1	1	1	NA	NA	NA	NA
1351289	1206566063	PD9774b	14	48874147	T	C	-	-	-	-	-	-	37	0	0	45	5	11.11111111	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.716845878	0.716845878	1	0.00625	0.99375	0	0	2	3.23E-06	1	1	1	NA	NA	NA	NA
1351289	1206566109	PD9774b	14	49464867	A	C	-	-	-	-	-	-	32	0	0	40	6	15	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.967741935	0.967741935	1	0.00125	0.9975	0.00125	0	2	5.18E-08	1	1	1	NA	NA	NA	NA
1351289	1206566115	PD9774b	14	49538131	T	C	-	-	-	-	-	-	33	0	0	65	7	10.76923077	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.694789082	0.694789082	1	0.00125	0.99875	0	0	2	4.22E-08	1	1	1	NA	NA	NA	NA
1351289	1206566138	PD9774b	14	50014494	G	C	-	-	-	-	-	-	36	0	0	57	6	10.52631579	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.679117148	0.679117148	1	0.0025	0.9975	0	0	2	4.56E-07	1	1	1	NA	NA	NA	NA
1351289	1206566342	PD9774b	14	52018765	A	C	FRMD6	CCDS9704.1	r.?	-	-	intronic	28	0	0	57	8	14.03508772	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.90548953	0.90548953	1	0	1	0	0	2	5.19E-10	1	1	1	NA	NA	NA	NA
1351289	1206566491	PD9774b	14	53898882	T	C	-	-	-	-	-	-	36	0	0	51	4	7.843137255	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.506008855	0.506008855	1	0.00625	0.99375	0	0	2	0.000129466	1	1	1	NA	NA	NA	NA
1351289	1206566586	PD9774b	14	55198131	G	C	SAMD4A	CCDS32084.1	r.?	-	-	intronic	42	0	0	56	12	21.42857143	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.382488479	1.382488479	1	0	0.99	0.01	0	2	1.11E-16	1	1	1	NA	NA	NA	NA
1351289	1206566623	PD9774b	14	55716947	T	C	-	-	-	-	-	-	30	0	0	33	4	12.12121212	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.782013685	0.782013685	1	0.005	0.995	0	0	2	2.28E-05	1	1	1	NA	NA	NA	NA
1351289	1206566758	PD9774b	14	57757872	G	C	MUDENG	CCDS9729.1	r.?	-	-	downstream	31	0	0	72	5	6.944444444	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.448028674	0.448028674	1	0.02	0.98	0	0	2	3.31E-05	1	1	1	NA	NA	NA	NA
1351289	1206567398	PD9774b	14	66204355	T	C	FUT8	CCDS9775.1	r.?	-	-	intronic	25	0	0	55	5	9.090909091	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.586510264	0.586510264	1	0.0025	0.9975	0	0	2	8.83E-06	1	1	1	NA	NA	NA	NA
1351289	1206567401	PD9774b	14	66280629	G	C	-	-	-	-	-	-	33	0	0	58	6	10.34482759	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.667408231	0.667408231	1	0.0025	0.9975	0	0	2	5.06E-07	1	1	1	NA	NA	NA	NA
1351289	1206567482	PD9774b	14	67638598	A	C	GPHN	CCDS9777.1	r.?	-	-	intronic	26	0	0	32	4	12.5	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.806451613	0.806451613	1	0	1	0	0	2	2.01E-05	1	1	1	NA	NA	NA	NA
1351289	1206567554	PD9774b	14	68707232	G	C	RAD51L1	CCDS9789.1	r.?	-	-	intronic	30	0	0	63	7	11.11111111	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.716845878	0.716845878	1	0.005	0.995	0	0	2	3.38E-08	1	1	1	NA	NA	NA	NA
1351289	1206567720	PD9774b	14	70941683	T	C	-	-	-	-	-	-	27	0	0	43	5	11.62790698	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.750187547	0.750187547	1	0.00375	0.99625	0	0	2	2.57E-06	1	1	1	NA	NA	NA	NA
1351289	1206567879	PD9774b	14	73229219	A	C	DPF3	CCDS45133.1	r.?	-	-	intronic	28	0	0	50	5	10	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.64516129	0.64516129	1	0.00375	0.99625	0	0	2	5.49E-06	1	1	1	NA	NA	NA	NA
1351289	1206568150	PD9774b	14	76160295	A	C	TTLL5	CCDS32124.1	r.?	-	-	intronic	36	0	0	73	5	6.849315068	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.441891295	0.441891295	1	0.02125	0.97875	0	0	2	3.54E-05	1	1	1	NA	NA	NA	NA
1351289	1206568776	PD9774b	14	84804223	T	C	-	-	-	-	-	-	25	0	0	39	7	17.94871795	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.157981803	1.157981803	1	0	0.99875	0.00125	0	2	1.04E-09	1	1	1	NA	NA	NA	NA
1351289	1206568840	PD9774b	14	86049289	T	C	FLRT2	CCDS9877.1	r.?	-	-	intronic	35	0	0	58	6	10.34482759	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.667408231	0.667408231	1	0.00375	0.99625	0	0	2	5.06E-07	1	1	1	NA	NA	NA	NA
1351289	1206568901	PD9774b	14	86757966	T	C	-	-	-	-	-	-	41	0	0	51	5	9.803921569	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.632511069	0.632511069	1	0.01	0.99	0	0	2	6.06E-06	1	1	1	NA	NA	NA	NA
1351289	1206569006	PD9774b	14	88346020	G	C	-	-	-	-	-	-	38	0	0	58	4	6.896551724	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.444938821	0.444938821	1	0.01125	0.98875	0	0	2	0.000213772	1	1	1	NA	NA	NA	NA
1351289	1206569100	PD9774b	14	89697510	T	C	FOXN3	CCDS32138.1	r.?	-	-	intronic	40	0	0	40	5	12.5	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.806451613	0.806451613	1	0.00375	0.99625	0	0	2	1.78E-06	1	1	1	NA	NA	NA	NA
1351289	1206569108	PD9774b	14	89787876	G	C	FOXN3	CCDS32138.1	r.?	-	-	intronic	36	0	0	60	5	8.333333333	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.537634409	0.537634409	1	0.01	0.99	0	0	2	1.36E-05	1	1	1	NA	NA	NA	NA
1351289	1206569173	PD9774b	14	90436953	G	C	TDP1	CCDS9888.1	r.?	-	-	intronic	37	0	0	57	4	7.01754386	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.452744765	0.452744765	1	0.01375	0.98625	0	0	2	0.000199821	1	1	1	NA	NA	NA	NA
1351289	1206569340	PD9774b	14	92187673	G	C	CATSPERB	CCDS32142.1	r.?	-	-	intronic	39	0	0	56	8	14.28571429	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.921658986	0.921658986	1	0.00125	0.9975	0.00125	0	2	4.48E-10	1	1	1	NA	NA	NA	NA
1351289	1206569467	PD9774b	14	93891173	A	C	KIAA1409	CCDS9911.2	r.?	-	-	intronic	35	0	0	26	4	15.38461538	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.992555831	0.992555831	1	0	1	0	0	2	8.56E-06	1	1	1	NA	NA	NA	NA
1351289	1206569614	PD9774b	14	96003934	A	C	GLRX5	CCDS9936.1	r.?	-	-	intronic	34	0	0	55	6	10.90909091	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.703812317	0.703812317	1	0.00625	0.99375	0	0	2	3.67E-07	1	1	1	NA	NA	NA	NA
1351289	1206569757	PD9774b	14	98073465	G	C	-	-	-	-	-	-	35	0	0	45	10	22.22222222	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.433691756	1.433691756	1	0	0.99625	0.00375	0	2	2.66E-14	1	1	1	NA	NA	NA	NA
1351289	1206570019	PD9774b	14	101613601	A	C	-	-	-	-	-	-	36	0	0	46	8	17.39130435	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.122019635	1.122019635	1	0	1	0	0	2	8.61E-11	1	1	1	NA	NA	NA	NA
1351289	1206570054	PD9774b	14	102198003	G	C	-	-	-	-	-	-	41	0	0	41	7	17.07317073	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.101494886	1.101494886	1	0.0025	0.99375	0.00375	0	2	1.51E-09	1	1	1	NA	NA	NA	NA
1351289	1206572086	PD9774b	15	20124797	G	C	-	-	-	-	-	-	50	0	0	57	5	8.771929825	53	0	0	88	9	10.22727273	1.455522118	1	0	0.544477882	1	1	0.455522118	unphased	0.518169739	1.137529262	0.455522118	0.00125	0.9975	0.00125	0	2	1.05E-05	1	7.82E-10	1	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206572783	PD9774b	15	20612660	T	C	-	-	-	-	-	-	85	0	0	125	7	5.6	0	0	NA	0	0	NA	1.455522118	1	0	0.544477882	1	1	0.455522118	unphased	0.330799561	0.726198681	0.455522118	0.00125	0.99875	0	0	2	3.72E-06	1	1	1	NA	NA	NA	NA
1351289	1206573001	PD9774b	15	22118300	T	C	-	-	-	-	-	-	13	0	0	24	9	37.5	0	0	NA	0	0	NA	1.455522118	1	0	0.544477882	1	1	0.455522118	unphased	2.215175633	2.215175633	1	0	0.94875	0.05125	0	2	2.39E-15	1	1	1	NA	NA	NA	NA
1351289	1206573156	PD9774b	15	22874313	G	C	TUBGCP5	CCDS10008.1	r.?	-	-	downstream	42	0	0	66	19	28.78787879	0	0	NA	0	0	NA	1.455522118	1	0	0.544477882	1	1	0.455522118	unphased	1.70053887	1.70053887	1	0	0.9275	0.0725	0	2	2.64E-28	1	1	1	NA	NA	NA	NA
1351289	1206573282	PD9774b	15	23794172	A	C	-	-	-	-	-	-	39	0	0	51	7	13.7254902	0	0	NA	0	0	NA	1.455522118	1	0	0.544477882	1	1	0.455522118	unphased	0.810783238	0.810783238	1	0	1	0	0	2	7.46E-09	1	1	1	NA	NA	NA	NA
1351289	1206573286	PD9774b	15	23807409	G	C	MKRN3	CCDS10013.1	r.?	-	-	upstream	46	0	0	26	3	11.53846154	0	0	NA	0	0	NA	1.455522118	1	0	0.544477882	1	1	0.455522118	unphased	0.681592502	0.681592502	1	0.0025	0.99625	0.00125	0	2	0.000298167	1	1	1	NA	NA	NA	NA
1351289	1206573542	PD9774b	15	25257234	T	C	-	-	-	-	-	-	46	0	0	71	28	39.43661972	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	2.149931849	2.149931849	1	0	0.06125	0.9325	0.00625	3	1.40E-45	1	1	1	NA	NA	NA	NA
1351289	1206573543	PD9774b	15	25261480	G	C	-	-	-	-	-	-	31	0	0	61	6	9.836065574	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.53622422	0.53622422	1	0.01125	0.98875	0	0	2	6.85E-07	1	1	1	NA	NA	NA	NA
1351289	1206573592	PD9774b	15	25779087	G	C	-	-	-	-	-	-	45	0	0	73	10	13.69863014	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.746796288	0.746796288	1	0.0025	0.9975	0	0	2	4.56E-12	1	1	1	NA	NA	NA	NA
1351289	1206573593	PD9774b	15	25780041	G	C	-	-	-	-	-	-	42	0	0	58	4	6.896551724	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.375973304	0.375973304	1	0.02875	0.97125	0	0	2	0.000213772	1	1	1	NA	NA	NA	NA
1351289	1206573666	PD9774b	15	26216316	A	C	ENSG00000206187	ENST00000383019	r.?	-	-	intronic	28	0	0	60	4	6.666666667	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.36344086	0.36344086	1	0.03125	0.96875	0	0	2	0.000243755	1	1	1	NA	NA	NA	NA
1351289	1206573729	PD9774b	15	27026151	A	C	-	-	-	-	-	-	38	0	0	54	6	11.11111111	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.716845878	0.716845878	1	0.0025	0.99625	0.00125	0	2	3.29E-07	1	1	1	NA	NA	NA	NA
1351289	1206573844	PD9774b	15	28224220	A	C	OCA2	CCDS10020.1	r.?	-	-	intronic	50	0	0	68	6	8.823529412	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.569259962	0.569259962	1	0.0025	0.9975	0	0	2	1.31E-06	1	1	1	NA	NA	NA	NA
1351289	1206574417	PD9774b	15	34872153	G	C	GOLGA8B	CCDS45211.1	r.?	-	-	intronic	38	0	0	54	4	7.407407407	0	0	NA	0	0	NA	0.769405399	0	0	0.230594601	1	0	0.769405399	unphased	0.386742096	0.502650614	0.769405399	0.01375	0.98625	0	0	2	0.000161898	1	1	1	NA	NA	NA	NA
1351289	1206574448	PD9774b	15	35343121	T	C	-	-	-	-	-	-	38	0	0	43	5	11.62790698	0	0	NA	0	0	NA	0.769405399	0	0	0.230594601	1	0	0.769405399	unphased	0.607095151	0.789044569	0.769405399	0.005	0.995	0	0	2	2.57E-06	1	1	1	NA	NA	NA	NA
1351289	1206574485	PD9774b	15	35716790	A	C	ATPBD4	CCDS10043.1	r.?	-	-	intronic	41	0	0	50	5	10	0	0	NA	0	0	NA	0.769405399	0	0	0.230594601	1	0	0.769405399	unphased	0.52210183	0.678578329	0.769405399	0.0025	0.9975	0	0	2	5.49E-06	1	1	1	NA	NA	NA	NA
1351289	1206574498	PD9774b	15	35874737	G	C	AC068867.1	ENST00000501169	r.?	-	-	intronic	32	0	0	44	8	18.18181818	0	0	NA	0	0	NA	0.769405399	0	0	0.230594601	1	0	0.769405399	unphased	0.949276055	0.949276055	1	0.00125	0.9975	0.00125	0	2	5.90E-11	1	1	1	NA	NA	NA	NA
1351289	1206574596	PD9774b	15	37226954	G	C	MEIS2	CCDS45217.1	r.?	-	-	intronic	41	0	0	60	11	18.33333333	0	0	NA	0	0	NA	0.769405399	0	0	0.230594601	1	0	0.769405399	unphased	0.957186689	0.957186689	1	0.00125	0.99875	0	0	2	1.34E-14	1	1	1	NA	NA	NA	NA
1351289	1206574902	PD9774b	15	41309026	G	C	INO80	CCDS10071.1	r.?	-	-	intronic	32	0	0	50	4	8	0	0	NA	0	0	NA	0.769405399	0	0	0.230594601	1	0	0.769405399	unphased	0.417681464	0.542862663	0.769405399	0.00625	0.99375	0	0	2	0.000119787	1	1	1	NA	NA	NA	NA
1351289	1206575089	PD9774b	15	44149391	G	C	WDR76	CCDS10106.1	r.?	-	-	intronic	44	0	0	57	5	8.771929825	0	0	NA	0	0	NA	0.769405399	0	0	0.230594601	1	0	0.769405399	unphased	0.457984062	0.595244148	0.769405399	0.0075	0.9925	0	0	2	1.05E-05	1	1	1	NA	NA	NA	NA
1351289	1206575198	PD9774b	15	45822584	G	C	SPATA5L1	ENST00000396655	r.?	-	-	intronic	42	0	0	70	4	5.714285714	0	0	NA	0	0	NA	0.769405399	0	0	0.230594601	1	0	0.769405399	unphased	0.298343903	0.298343903	1	0.0875	0.9125	0	0	2	0.000440508	1	1	1	NA	NA	NA	NA
1351289	1206575702	PD9774b	15	51908554	A	C	DMXL2	CCDS10141.1	r.?	-	-	intronic	32	0	0	48	7	14.58333333	0	0	NA	0	0	NA	0.769405399	0	0	0.230594601	1	0	0.769405399	unphased	0.761398502	0.989593396	0.769405399	0.00125	0.99875	0	0	2	4.81E-09	1	1	1	NA	NA	NA	NA
1351289	1206575727	PD9774b	15	52159167	A	C	TMOD3	CCDS10145.1	r.?	-	-	intronic	42	0	0	49	8	16.32653061	0	0	NA	0	0	NA	0.769405399	0	0	0.230594601	1	0	0.769405399	unphased	0.852411151	1.107882986	0.769405399	0.00125	0.99875	0	0	2	1.47E-10	1	1	1	NA	NA	NA	NA
1351289	1206576374	PD9774b	15	60569152	G	C	-	-	-	-	-	-	30	0	0	46	5	10.86956522	0	0	NA	0	0	NA	0.769405399	0	0	0.230594601	1	0	0.769405399	unphased	0.567501989	0.73758514	0.769405399	0.00125	0.99875	0	0	2	3.61E-06	1	1	1	NA	NA	NA	NA
1351289	1206576751	PD9774b	15	65396631	A	C	AC013553.1	ENST00000502113	r.?	-	-	upstream	32	0	0	68	11	16.17647059	0	0	NA	0	0	NA	0.769405399	0	0	0.230594601	1	0	0.769405399	unphased	0.84457649	1.097700238	0.769405399	0	0.9975	0.0025	0	2	5.76E-14	1	1	1	NA	NA	NA	NA
1351289	1206576817	PD9774b	15	66050823	T	C	DENND4A	CCDS45285.1	r.?	-	-	intronic	31	0	0	33	4	12.12121212	0	0	NA	0	0	NA	0.769405399	0	0	0.230594601	1	0	0.769405399	unphased	0.632850703	0.822519187	0.769405399	0.005	0.99375	0.00125	0	2	2.28E-05	1	1	1	NA	NA	NA	NA
1351289	1206577068	PD9774b	15	69253972	G	C	NOX5	CCDS32276.1	r.?	-	-	intronic	38	0	0	48	12	25	0	0	NA	0	0	NA	0.769405399	0	0	0.230594601	1	0	0.769405399	unphased	1.305254576	1.305254576	1	0	0.99625	0.00375	0	2	1.44E-17	1	1	1	NA	NA	NA	NA
1351289	1206577618	PD9774b	15	76693285	G	C	SCAPER	ENST00000303521	r.?	-	-	intronic	54	0	0	45	8	17.77777778	0	0	NA	0	0	NA	0.769405399	0	0	0.230594601	1	0	0.769405399	unphased	0.928181032	0.928181032	1	0	1	0	0	2	7.14E-11	1	1	1	NA	NA	NA	NA
1351289	1206577690	PD9774b	15	78117816	G	C	-	-	-	-	-	-	32	0	0	36	5	13.88888889	0	0	NA	0	0	NA	0.769405399	0	0	0.230594601	1	0	0.769405399	unphased	0.725141431	0.942469901	0.769405399	0.00125	0.99625	0.0025	0	2	1.04E-06	1	1	1	NA	NA	NA	NA
1351289	1206578069	PD9774b	15	83334256	G	C	AP3B2	CCDS45331.1	r.2101c>g	c.1924C>G	p.P642A	missense	29	0	0	38	4	10.52631579	0	0	NA	0	0	NA	0.769405399	0	0	0.230594601	1	0	0.769405399	unphased	0.549580874	0.714292978	0.769405399	0.00375	0.99625	0	0	2	4.03E-05	1	1	1	NA	NA	NA	NA
1351289	1206578124	PD9774b	15	84004577	T	C	-	-	-	-	-	-	37	0	0	36	5	13.88888889	0	0	NA	0	0	NA	0.769405399	0	0	0.230594601	1	0	0.769405399	unphased	0.725141431	0.942469901	0.769405399	0.00125	0.9975	0.00125	0	2	1.04E-06	1	1	1	NA	NA	NA	NA
1351289	1206578454	PD9774b	15	88655419	G	C	NTRK3	CCDS10340.1	r.?	-	-	intronic	28	0	0	44	6	13.63636364	0	0	NA	0	0	NA	0.769405399	0	0	0.230594601	1	0	0.769405399	unphased	0.711957041	0.925334085	0.769405399	0.00125	0.99875	0	0	2	9.37E-08	1	1	1	NA	NA	NA	NA
1351289	1206578991	PD9774b	15	95352244	A	C	-	-	-	-	-	-	41	0	0	48	6	12.5	0	0	NA	0	0	NA	0.769405399	0	0	0.230594601	1	0	0.769405399	unphased	0.652627288	0.848222911	0.769405399	0.00125	0.99875	0	0	2	1.60E-07	1	1	1	NA	NA	NA	NA
1351289	1206579128	PD9774b	15	97225910	G	C	-	-	-	-	-	-	36	0	0	37	4	10.81081081	0	0	NA	0	0	NA	0.769405399	0	0	0.230594601	1	0	0.769405399	unphased	0.564434411	0.733598194	0.769405399	0.00375	0.99625	0	0	2	3.62E-05	1	1	1	NA	NA	NA	NA
1351289	1206579180	PD9774b	15	97956136	G	C	-	-	-	-	-	-	30	0	0	40	5	12.5	0	0	NA	0	0	NA	0.769405399	0	0	0.230594601	1	0	0.769405399	unphased	0.652627288	0.848222911	0.769405399	0.0025	0.9975	0	0	2	1.78E-06	1	1	1	NA	NA	NA	NA
1351289	1206579196	PD9774b	15	98313574	T	C	AC027708.1	ENST00000503768	r.?	-	-	intronic	29	0	0	60	10	16.66666667	0	0	NA	0	0	NA	0.769405399	0	0	0.230594601	1	0	0.769405399	unphased	0.870169717	0.870169717	1	0.0025	0.9975	0	0	2	5.86E-13	1	1	1	NA	NA	NA	NA
1351289	1206579503	PD9774b	15	101857610	G	C	PCSK6	ENST00000348070	r.?	-	-	intronic	33	0	0	51	10	19.60784314	0	0	NA	0	0	NA	0.769405399	0	0	0.230594601	1	0	0.769405399	unphased	1.023729079	1.023729079	1	0	1	0	0	2	1.04E-13	1	1	1	NA	NA	NA	NA
1351289	1206579638	PD9774b	16	95258	G	C	POLR3K	CCDS10395.1	r.?	-	-	downstream	16	0	0	46	4	8.695652174	0	0	NA	0	0	NA	1.176144945	1	0	0.823855055	2	0	0.176144945	unphased	0.489370248	0.489370248	1	0.005	0.995	0	0	2	8.62E-05	1	1	1	NA	NA	NA	NA
1351289	1206579882	PD9774b	16	1918678	A	C	C16orf73	CCDS10449.2	r.?	-	-	intronic	31	0	0	40	11	27.5	0	0	NA	0	0	NA	1.176144945	1	0	0.823855055	2	0	0.176144945	unphased	1.547633408	1.547633408	1	0	0.98875	0.01125	0	2	9.88E-17	1	1	1	NA	NA	NA	NA
1351289	1206580717	PD9774b	16	10565529	G	C	ATF7IP2	CCDS10540.1	r.?	-	-	intronic	35	0	0	47	6	12.76595745	0	0	NA	0	0	NA	1.176144945	1	0	0.823855055	2	0	0.176144945	unphased	0.718437172	0.718437172	1	0.00625	0.99375	0	0	2	1.41E-07	1	1	1	NA	NA	NA	NA
1351289	1206580961	PD9774b	16	13257703	G	C	SHISA9	CCDS45417.1	r.?	-	-	intronic	40	0	0	53	8	15.09433962	0	0	NA	0	0	NA	0.807308851	0	0	0.192691149	1	0	0.807308851	unphased	0.79379951	0.983266205	0.807308851	0.0025	0.9975	0	0	2	2.83E-10	1	1	1	NA	NA	NA	NA
1351289	1206581130	PD9774b	16	15204050	G	C	-	-	-	-	-	-	32	0	0	30	4	13.33333333	0	0	NA	0	0	NA	0.807308851	0	0	0.192691149	1	0	0.807308851	unphased	0.701189567	0.868551814	0.807308851	0.0025	0.9975	0	0	2	1.54E-05	1	1	1	NA	NA	NA	NA
1351289	1206581132	PD9774b	16	15254591	A	C	-	-	-	-	-	-	36	0	0	53	11	20.75471698	0	0	NA	0	0	NA	0.807308851	0	0	0.192691149	1	0	0.807308851	unphased	1.091474326	1.091474326	1	0.00125	0.99625	0.0025	0	2	3.07E-15	1	1	1	NA	NA	NA	NA
1351289	1206581372	PD9774b	16	17637813	A	C	-	-	-	-	-	-	36	0	0	45	6	13.33333333	0	0	NA	0	0	NA	0.807308851	0	0	0.192691149	1	0	0.807308851	unphased	0.701189567	0.868551814	0.807308851	0.00625	0.9925	0.00125	0	2	1.08E-07	1	1	1	NA	NA	NA	NA
1351289	1206581940	PD9774b	16	23286130	T	C	-	-	-	-	-	-	30	0	0	50	5	10	0	0	NA	0	0	NA	0.807308851	0	0	0.192691149	1	0	0.807308851	unphased	0.525892175	0.651413861	0.807308851	0.0025	0.9975	0	0	2	5.49E-06	1	1	1	NA	NA	NA	NA
1351289	1206582039	PD9774b	16	24463323	G	C	-	-	-	-	-	-	28	0	0	38	7	18.42105263	0	0	NA	0	0	NA	0.807308851	0	0	0.192691149	1	0	0.807308851	unphased	0.968748744	0.968748744	1	0.00125	0.9975	0.00125	0	2	8.61E-10	1	1	1	NA	NA	NA	NA
1351289	1206582176	PD9774b	16	26012533	T	C	HS3ST4	ENST00000331351	r.?	-	-	intronic	41	0	0	41	9	21.95121951	0	0	NA	0	0	NA	0.807308851	0	0	0.192691149	1	0	0.807308851	unphased	1.154397458	1.154397458	1	0.00125	0.9975	0.00125	0	2	5.92E-13	1	1	1	NA	NA	NA	NA
1351289	1206582331	PD9774b	16	28056379	G	C	GSG1L	CCDS45450.1	r.?	-	-	intronic	23	0	0	52	9	17.30769231	0	0	NA	0	0	NA	1.570280508	1	0	0.429719492	1	1	0.570280508	unphased	1.042250783	1.042250783	1	0.0025	0.99625	0.00125	0	2	5.92E-12	1	1	1	NA	NA	NA	NA
1351289	1206582608	PD9774b	16	30694725	A	C	-	-	-	-	-	-	25	0	0	55	5	9.090909091	0	0	NA	0	0	NA	1.570280508	1	0	0.429719492	1	1	0.570280508	unphased	0.547444856	0.959957158	0.570280508	0.00125	0.99875	0	0	2	8.83E-06	1	1	1	NA	NA	NA	NA
1351289	1206591135	PD9774b	16	48886937	T	C	-	-	-	-	-	-	31	0	0	39	5	12.82051282	0	0	NA	0	0	NA	1.570280508	1	0	0.429719492	1	1	0.570280508	unphased	0.772037617	0.772037617	1	0.00125	0.99875	0	0	2	1.56E-06	1	1	1	NA	NA	NA	NA
1351289	1206591144	PD9774b	16	49026657	T	C	-	-	-	-	-	-	27	0	0	35	5	14.28571429	0	0	NA	0	0	NA	1.570280508	1	0	0.429719492	1	1	0.570280508	unphased	0.860270487	0.860270487	1	0.0025	0.9975	0	0	2	8.95E-07	1	1	1	NA	NA	NA	NA
1351289	1206591535	PD9774b	16	53496139	G	C	RBL2	CCDS10748.1	r.?	-	-	intronic	33	0	0	44	5	11.36363636	0	0	NA	0	0	NA	1.570280508	1	0	0.429719492	1	1	0.570280508	unphased	0.684306069	1.199946448	0.570280508	0.00125	0.995	0.00375	0	2	2.88E-06	1	1	1	NA	NA	NA	NA
1351289	1206591650	PD9774b	16	55120271	T	C	-	-	-	-	-	-	35	0	0	48	7	14.58333333	0	0	NA	0	0	NA	1.570280508	1	0	0.429719492	1	1	0.570280508	unphased	0.878192789	0.878192789	1	0.00125	0.99875	0	0	2	4.81E-09	1	1	1	NA	NA	NA	NA
1351289	1206591917	PD9774b	16	58090923	G	C	-	-	-	-	-	-	38	0	0	45	9	20	0	0	NA	0	0	NA	1.570280508	1	0	0.429719492	1	1	0.570280508	unphased	1.204378682	1.204378682	1	0.00125	0.9975	0.00125	0	2	1.47E-12	1	1	1	NA	NA	NA	NA
1351289	1206592199	PD9774b	16	61902553	A	C	CDH8	CCDS10802.1	r.?	-	-	intronic	19	0	0	53	7	13.20754717	0	0	NA	0	0	NA	1.570280508	1	0	0.429719492	1	1	0.570280508	unphased	0.795344413	0.795344413	1	0.00125	0.99875	0	0	2	9.85E-09	1	1	1	NA	NA	NA	NA
1351289	1206592246	PD9774b	16	62466459	G	C	-	-	-	-	-	-	37	0	0	50	5	10	0	0	NA	0	0	NA	1.570280508	1	0	0.429719492	1	1	0.570280508	unphased	0.602189341	1.055952874	0.570280508	0.00125	0.9975	0.00125	0	2	5.49E-06	1	1	1	NA	NA	NA	NA
1351289	1206592343	PD9774b	16	63662494	T	C	-	-	-	-	-	-	25	0	0	47	9	19.14893617	0	0	NA	0	0	NA	1.570280508	1	0	0.429719492	1	1	0.570280508	unphased	1.153128525	1.153128525	1	0	1	0	0	2	2.24E-12	1	1	1	NA	NA	NA	NA
1351289	1206592443	PD9774b	16	65241592	G	C	-	-	-	-	-	-	32	0	0	55	4	7.272727273	0	0	NA	0	0	NA	1.570280508	1	0	0.429719492	1	1	0.570280508	unphased	0.437955884	0.767965727	0.570280508	0.0025	0.99625	0.00125	0	2	0.000173903	1	1	1	NA	NA	NA	NA
1351289	1206592511	PD9774b	16	65920631	G	C	-	-	-	-	-	-	41	0	0	48	5	10.41666667	0	0	NA	0	0	NA	1.570280508	1	0	0.429719492	1	1	0.570280508	unphased	0.627280564	1.09995091	0.570280508	0	0.99875	0.00125	0	2	4.47E-06	1	1	1	NA	NA	NA	NA
1351289	1206592749	PD9774b	16	69058174	T	C	TMCO7	CCDS45516.1	r.?	-	-	intronic	33	0	0	44	4	9.090909091	0	0	NA	0	0	NA	1.570280508	1	0	0.429719492	1	1	0.570280508	unphased	0.547444856	0.959957158	0.570280508	0	1	0	0	2	7.23E-05	1	1	1	NA	NA	NA	NA
1351289	1206592798	PD9774b	16	69421287	G	C	TERF2	CCDS10879.1	r.?	-	-	upstream	22	0	0	40	8	20	0	0	NA	0	0	NA	1.570280508	1	0	0.429719492	1	1	0.570280508	unphased	1.204378682	1.204378682	1	0	0.99875	0.00125	0	2	2.61E-11	1	1	1	NA	NA	NA	NA
1351289	1206592811	PD9774b	16	69518250	G	C	-	-	-	-	-	-	32	0	0	53	4	7.547169811	0	0	NA	0	0	NA	1.570280508	1	0	0.429719492	1	1	0.570280508	unphased	0.454482522	0.796945565	0.570280508	0.00375	0.99625	0	0	2	0.000150502	1	1	1	NA	NA	NA	NA
1351289	1206592985	PD9774b	16	70831381	T	C	VAC14	CCDS10896.1	r.?	-	-	intronic	37	0	0	54	10	18.51851852	0	0	NA	0	0	NA	1.570280508	1	0	0.429719492	1	1	0.570280508	unphased	1.115165446	1.115165446	1	0	1	0	0	2	1.91E-13	1	1	1	NA	NA	NA	NA
1351289	1206593108	PD9774b	16	71329447	G	C	-	-	-	-	-	-	38	0	0	40	4	10	0	0	NA	0	0	NA	1.570280508	1	0	0.429719492	1	1	0.570280508	unphased	0.602189341	1.055952874	0.570280508	0.00125	0.99875	0	0	2	4.95E-05	1	1	1	NA	NA	NA	NA
1351289	1206593494	PD9774b	16	75623780	A	C	-	-	-	-	-	-	34	0	0	56	6	10.71428571	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.69124424	0.69124424	1	0.0025	0.9975	0	0	2	4.09E-07	1	1	1	NA	NA	NA	NA
1351289	1206593606	PD9774b	16	77065536	G	C	-	-	-	-	-	-	42	0	0	57	5	8.771929825	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.565930956	0.565930956	1	0.0075	0.9925	0	0	2	1.05E-05	1	1	1	NA	NA	NA	NA
1351289	1206593679	PD9774b	16	77845906	A	C	VAT1L	CCDS32492.1	r.?	-	-	intronic	41	0	0	37	5	13.51351351	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.871839582	0.871839582	1	0.00125	0.99875	0	0	2	1.19E-06	1	1	1	NA	NA	NA	NA
1351289	1206593860	PD9774b	16	79847238	G	C	-	-	-	-	-	-	38	0	0	59	4	6.779661017	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.437397485	0.437397485	1	0.00625	0.99375	0	0	2	0.00022841	1	1	1	NA	NA	NA	NA
1351289	1206593944	PD9774b	16	80605662	A	C	AC108097.1	ENST00000507138	r.?	-	-	upstream	29	0	0	49	8	16.32653061	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.053324556	1.053324556	1	0	0.99625	0.00375	0	2	1.47E-10	1	1	1	NA	NA	NA	NA
1351289	1206593957	PD9774b	16	80722584	A	C	CDYL2	CCDS32493.1	r.?	-	-	intronic	33	0	0	50	7	14	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.903225806	0.903225806	1	0.00125	0.99875	0	0	2	6.46E-09	1	1	1	NA	NA	NA	NA
1351289	1206594009	PD9774b	16	81281060	G	C	BCMO1	CCDS10934.1	r.?	-	-	intronic	38	0	0	71	11	15.49295775	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.999545661	0.999545661	1	0	0.99875	0.00125	0	2	9.49E-14	1	1	1	NA	NA	NA	NA
1351289	1206594022	PD9774b	16	81393433	G	C	GAN	CCDS10935.1	r.?	-	-	intronic	38	0	0	52	5	9.615384615	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.620347395	0.620347395	1	0.00125	0.99875	0	0	2	6.68E-06	1	1	1	NA	NA	NA	NA
1351289	1206594137	PD9774b	16	82316675	G	C	-	-	-	-	-	-	37	0	0	56	6	10.71428571	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.69124424	0.69124424	1	0.00375	0.99625	0	0	2	4.09E-07	1	1	1	NA	NA	NA	NA
1351289	1206594255	PD9774b	16	83734211	G	C	CDH13	ENST00000268613	r.?	-	-	intronic	33	0	0	56	4	7.142857143	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.460829493	0.460829493	1	0.01625	0.98375	0	0	2	0.000186538	1	1	1	NA	NA	NA	NA
1351289	1206594312	PD9774b	16	84167117	A	C	HSDL1	CCDS10942.1	r.?	-	-	intronic	37	0	0	66	7	10.60606061	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.684261975	0.684261975	1	0.005	0.995	0	0	2	4.70E-08	1	1	1	NA	NA	NA	NA
1351289	1206594466	PD9774b	16	85652945	G	C	KIAA0182	CCDS10952.1	r.?	-	-	intronic	41	0	0	48	6	12.5	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.806451613	0.806451613	1	0.00125	0.99875	0	0	2	1.60E-07	1	1	1	NA	NA	NA	NA
1351289	1206594681	PD9774b	16	87609181	G	C	-	-	-	-	-	-	35	0	0	48	4	8.333333333	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.537634409	0.537634409	1	0.01375	0.98625	0	0	2	0.000102016	1	1	1	NA	NA	NA	NA
1351289	1206594815	PD9774b	16	88606035	G	C	ZFPM1	CCDS32502.1	r.?	-	-	downstream	41	0	0	48	4	8.333333333	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.537634409	0.537634409	1	0.005	0.995	0	0	2	0.000102016	1	1	1	NA	NA	NA	NA
1351289	1206594827	PD9774b	16	88686814	T	C	ZC3H18	CCDS10967.1	r.?	-	-	intronic	26	0	0	56	6	10.71428571	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.69124424	0.69124424	1	0.0025	0.9975	0	0	2	4.09E-07	1	1	1	NA	NA	NA	NA
1351289	1206594838	PD9774b	16	88804645	T	C	FAM38A	ENST00000451779	r.?	-	-	upstream	23	0	0	28	6	21.42857143	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.382488479	1.382488479	1	0.00125	0.99625	0.0025	0	2	5.36E-09	1	1	1	NA	NA	NA	NA
1351289	1206595577	PD9774b	17	2986895	G	C	-	-	-	-	-	-	29	0	0	47	4	8.510638298	0	0	NA	0	0	NA	0.78531958	0	0	0.21468042	1	0	0.78531958	unphased	0.445696382	0.567535043	0.78531958	0.00375	0.99625	0	0	2	9.39E-05	1	1	1	NA	NA	NA	NA
1351289	1206595702	PD9774b	17	4337891	A	C	SPNS3	CCDS11045.1	r.?	-	-	intronic	30	0	0	46	5	10.86956522	0	0	NA	0	0	NA	0.78531958	0	0	0.21468042	1	0	0.78531958	unphased	0.569231792	0.724840952	0.78531958	0	1	0	0	2	3.61E-06	1	1	1	NA	NA	NA	NA
1351289	1206595740	PD9774b	17	4619611	A	C	ARRB2	CCDS11050.1	r.?	-	-	intronic	28	0	0	26	3	11.53846154	0	0	NA	0	0	NA	0.78531958	0	0	0.21468042	1	0	0.78531958	unphased	0.60426144	0.769446549	0.78531958	0.00125	0.99875	0	0	2	0.000298167	1	1	1	NA	NA	NA	NA
1351289	1206596021	PD9774b	17	7823767	G	C	KCNAB3	CCDS11124.1	r.?	-	-	downstream	28	0	0	46	5	10.86956522	0	0	NA	0	0	NA	0.78531958	0	0	0.21468042	1	0	0.78531958	unphased	0.569231792	0.724840952	0.78531958	0.00125	0.99875	0	0	2	3.61E-06	1	1	1	NA	NA	NA	NA
1351289	1206596065	PD9774b	17	8328135	T	C	-	-	-	-	-	-	33	0	0	45	6	13.33333333	0	0	NA	0	0	NA	0.78531958	0	0	0.21468042	1	0	0.78531958	unphased	0.698257664	0.889138234	0.78531958	0.00125	0.9975	0.00125	0	2	1.08E-07	1	1	1	NA	NA	NA	NA
1351289	1206596103	PD9774b	17	8716916	T	C	-	-	-	-	-	-	43	0	0	57	6	10.52631579	0	0	NA	0	0	NA	0.78531958	0	0	0.21468042	1	0	0.78531958	unphased	0.551256051	0.701951238	0.78531958	0.0025	0.9975	0	0	2	4.56E-07	1	1	1	NA	NA	NA	NA
1351289	1206596111	PD9774b	17	8813036	T	C	PIK3R5	CCDS11147.1	r.?	-	-	intronic	19	0	0	39	8	20.51282051	0	0	NA	0	0	NA	0.78531958	0	0	0.21468042	1	0	0.78531958	unphased	1.074242561	1.074242561	1	0.00125	0.99625	0.0025	0	2	2.09E-11	1	1	1	NA	NA	NA	NA
1351289	1206596164	PD9774b	17	9345658	G	C	STX8	CCDS32565.1	r.?	-	-	intronic	36	0	0	52	9	17.30769231	0	0	NA	0	0	NA	0.78531958	0	0	0.21468042	1	0	0.78531958	unphased	0.906392161	0.906392161	1	0.0025	0.9975	0	0	2	5.92E-12	1	1	1	NA	NA	NA	NA
1351289	1206596208	PD9774b	17	9874536	A	C	GAS7	CCDS11152.1	r.?	-	-	intronic	28	0	0	41	6	14.63414634	0	0	NA	0	0	NA	0.78531958	0	0	0.21468042	1	0	0.78531958	unphased	0.766380363	0.975883428	0.78531958	0.00125	0.99875	0	0	2	6.05E-08	1	1	1	NA	NA	NA	NA
1351289	1206596363	PD9774b	17	11816842	A	C	DNAH9	CCDS11160.1	r.?	-	-	intronic	43	0	0	47	10	21.27659574	0	0	NA	0	0	NA	0.78531958	0	0	0.21468042	1	0	0.78531958	unphased	1.114240954	1.114240954	1	0	1	0	0	2	4.27E-14	1	1	1	NA	NA	NA	NA
1351289	1206596558	PD9774b	17	13862943	T	C	-	-	-	-	-	-	34	0	0	53	8	15.09433962	0	0	NA	0	0	NA	0.78531958	0	0	0.21468042	1	0	0.78531958	unphased	0.790480375	1.006571586	0.78531958	0.00125	0.9975	0.00125	0	2	2.83E-10	1	1	1	NA	NA	NA	NA
1351289	1206596589	PD9774b	17	14275098	T	C	-	-	-	-	-	-	35	0	0	44	6	13.63636364	0	0	NA	0	0	NA	0.78531958	0	0	0.21468042	1	0	0.78531958	unphased	0.714127157	0.909345921	0.78531958	0	1	0	0	2	9.37E-08	1	1	1	NA	NA	NA	NA
1351289	1206596710	PD9774b	17	15675174	A	C	-	-	-	-	-	-	25	0	0	39	5	12.82051282	0	0	NA	0	0	NA	0.78531958	0	0	0.21468042	1	0	0.78531958	unphased	0.6714016	0.85494061	0.78531958	0.0025	0.9975	0	0	2	1.56E-06	1	1	1	NA	NA	NA	NA
1351289	1206596736	PD9774b	17	15859753	G	C	ADORA2B	CCDS11173.1	r.?	-	-	intronic	32	0	0	49	5	10.20408163	0	0	NA	0	0	NA	0.78531958	0	0	0.21468042	1	0	0.78531958	unphased	0.534380866	0.680462934	0.78531958	0.00125	0.99875	0	0	2	4.96E-06	1	1	1	NA	NA	NA	NA
1351289	1206597072	PD9774b	17	18630434	G	C	TRIM16L	CCDS32588.1	r.?	-	-	intronic	25	0	0	46	6	13.04347826	0	0	NA	0	0	NA	0.78531958	0	0	0.21468042	1	0	0.78531958	unphased	0.68307815	0.869809142	0.78531958	0	0.99875	0.00125	0	2	1.23E-07	1	1	1	NA	NA	NA	NA
1351289	1206600224	PD9774b	17	26059138	A	C	-	-	-	-	-	-	28	0	0	49	9	18.36734694	0	0	NA	0	0	NA	1.337843266	1	0	0.662156734	2	0	0.337843266	unphased	1.0633695	1.0633695	1	0	1	0	0	2	3.35E-12	1	1	1	NA	NA	NA	NA
1351289	1206600379	PD9774b	17	28034023	T	C	SSH2	CCDS11253.1	r.?	-	-	intronic	24	0	0	47	9	19.14893617	0	0	NA	0	0	NA	1.337843266	1	0	0.662156734	2	0	0.337843266	unphased	1.108619266	1.108619266	1	0.00125	0.9975	0.00125	0	2	2.24E-12	1	1	1	NA	NA	NA	NA
1351289	1206600401	PD9774b	17	28159121	T	C	SSH2	CCDS11253.1	r.?	-	-	intronic	32	0	0	60	15	25	0	0	NA	0	0	NA	1.337843266	1	0	0.662156734	2	0	0.337843266	unphased	1.447364042	1.447364042	1	0	0.99125	0.00875	0	2	1.31E-21	1	1	1	NA	NA	NA	NA
1351289	1206600507	PD9774b	17	29464023	A	C	NF1	CCDS42292.1	r.?	-	-	intronic	35	0	0	51	14	27.45098039	0	0	NA	0	0	NA	1.337843266	1	0	0.662156734	2	0	0.337843266	unphased	1.589262478	1.187928749	1.337843266	0	1	0	0	2	6.64E-21	1	1	1	NA	NA	NA	NA
1351289	1206600726	PD9774b	17	31436760	A	C	ACCN1	CCDS11276.1	r.?	-	-	intronic	31	0	0	56	4	7.142857143	0	0	NA	0	0	NA	1.337843266	1	0	0.662156734	2	0	0.337843266	unphased	0.413532584	1.22403678	0.337843266	0	0.99875	0.00125	0	2	0.000186538	1	1	1	NA	NA	NA	NA
1351289	1206600742	PD9774b	17	31741587	G	C	ACCN1	CCDS42296.1	r.?	-	-	intronic	25	0	0	54	10	18.51851852	0	0	NA	0	0	NA	1.337843266	1	0	0.662156734	2	0	0.337843266	unphased	1.072121513	1.072121513	1	0	1	0	0	2	1.91E-13	1	1	1	NA	NA	NA	NA
1351289	1206600841	PD9774b	17	33033220	G	C	-	-	-	-	-	-	33	0	0	50	4	8	0	0	NA	0	0	NA	1.337843266	1	0	0.662156734	2	0	0.337843266	unphased	0.463156494	1.370921194	0.337843266	0	0.99875	0.00125	0	2	0.000119787	1	1	1	NA	NA	NA	NA
1351289	1206601029	PD9774b	17	35383779	G	C	AATF	CCDS32632.1	r.?	-	-	intronic	41	0	0	71	8	11.26760563	0	0	NA	0	0	NA	1.337843266	1	0	0.662156734	2	0	0.337843266	unphased	0.652333089	0.652333089	1	0.00375	0.99625	0	0	2	3.14E-09	1	1	1	NA	NA	NA	NA
1351289	1206601222	PD9774b	17	36948711	T	C	PIP4K2B	CCDS11329.1	r.?	-	-	intronic	38	0	0	45	4	8.888888889	0	0	NA	0	0	NA	1.337843266	1	0	0.662156734	2	0	0.337843266	unphased	0.514618326	0.514618326	1	0.00625	0.99375	0	0	2	7.91E-05	1	1	1	NA	NA	NA	NA
1351289	1206601290	PD9774b	17	37452069	T	C	FBXL20	CCDS32640.1	r.?	-	-	intronic	9	0	0	16	8	50	0	0	NA	0	0	NA	1.337843266	1	0	0.662156734	2	0	0.337843266	unphased	2.894728085	2.163727365	1.337843266	0	0.95375	0.04625	0	2	4.85E-15	1	1	1	NA	NA	NA	NA
1351289	1206601466	PD9774b	17	39398914	G	C	KRTAP9-8	CCDS42334.1	r.?	-	-	downstream	25	0	0	55	7	12.72727273	0	0	NA	0	0	NA	1.337843266	1	0	0.662156734	2	0	0.337843266	unphased	0.736839876	0.736839876	1	0.0025	0.9975	0	0	2	1.28E-08	1	1	1	NA	NA	NA	NA
1351289	1206601469	PD9774b	17	39443062	A	C	-	-	-	-	-	-	40	0	0	38	4	10.52631579	0	0	NA	0	0	NA	1.337843266	1	0	0.662156734	2	0	0.337843266	unphased	0.609416439	0.609416439	1	0.0025	0.9975	0	0	2	4.03E-05	1	1	1	NA	NA	NA	NA
1351289	1206601470	PD9774b	17	39443063	G	C	-	-	-	-	-	-	39	0	0	36	4	11.11111111	0	0	NA	0	0	NA	1.337843266	1	0	0.662156734	2	0	0.337843266	unphased	0.643272908	0.643272908	1	0.00375	0.995	0.00125	0	2	3.24E-05	1	1	1	NA	NA	NA	NA
1351289	1206602229	PD9774b	17	45820541	T	C	TBX21	CCDS11514.1	r.962u>c	c.751T>C	p.S251P	missense	27	0	0	41	7	17.07317073	144	0	0	56	12	21.42857143	1.359934568	1	0	0.640065432	2	0	0.359934568	unphased	0.992215422	0.992215422	1	0	1	0	0	2	1.51E-09	1	1.11E-16	1	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206602318	PD9774b	17	46609179	T	C	HOXB1	CCDS32675.1	r.?	-	-	upstream	32	0	0	57	5	8.771929825	0	0	NA	0	0	NA	1.359934568	1	0	0.640065432	2	0	0.359934568	unphased	0.509784866	1.416326497	0.359934568	0.0025	0.99375	0.00375	0	2	1.05E-05	1	1	1	NA	NA	NA	NA
1351289	1206602429	PD9774b	17	47459508	T	C	-	-	-	-	-	-	38	0	0	35	8	22.85714286	0	0	NA	0	0	NA	1.359934568	1	0	0.640065432	2	0	0.359934568	unphased	1.328353708	1.328353708	1	0	0.9925	0.0075	0	2	8.15E-12	1	1	1	NA	NA	NA	NA
1351289	1206602796	PD9774b	17	51956515	A	C	-	-	-	-	-	-	29	0	0	48	17	35.41666667	0	0	NA	0	0	NA	1.359934568	1	0	0.640065432	2	0	0.359934568	unphased	2.058256396	1.513496638	1.359934568	0	0.98375	0.01625	0	2	2.80E-27	1	1	1	NA	NA	NA	NA
1351289	1206602806	PD9774b	17	52093228	A	C	-	-	-	-	-	-	38	0	0	47	10	21.27659574	0	0	NA	0	0	NA	1.359934568	1	0	0.640065432	2	0	0.359934568	unphased	1.236499462	1.236499462	1	0.00125	0.9925	0.00625	0	2	4.27E-14	1	1	1	NA	NA	NA	NA
1351289	1206602960	PD9774b	17	54143792	T	C	-	-	-	-	-	-	36	0	0	47	8	17.0212766	0	0	NA	0	0	NA	1.359934568	1	0	0.640065432	2	0	0.359934568	unphased	0.98919957	0.98919957	1	0	1	0	0	2	1.03E-10	1	1	1	NA	NA	NA	NA
1351289	1206603456	PD9774b	17	60127708	A	C	MED13	CCDS42366.1	r.?	-	-	intronic	48	0	0	65	24	36.92307692	0	0	NA	0	0	NA	2	2	0	1	NA	NA	NA	unphased	2.382133995	1.191066998	2	0	1	0	0	2	1.94E-38	1	1	1	NA	NA	NA	NA
1351289	1206603518	PD9774b	17	60593941	G	C	TLK2	CCDS11633.1	r.?	-	-	intronic	30	0	0	35	13	37.14285714	0	0	NA	0	0	NA	2	2	0	1	NA	NA	NA	unphased	2.396313364	1.198156682	2	0.00125	0.99875	0	0	2	1.63E-21	1	1	1	NA	NA	NA	NA
1351289	1206603572	PD9774b	17	60982218	G	C	-	-	-	-	-	-	20	0	0	34	9	26.47058824	0	0	NA	0	0	NA	2	2	0	1	NA	NA	NA	unphased	1.707779886	1.707779886	1	0	0.98875	0.01125	0	2	9.15E-14	1	1	1	NA	NA	NA	NA
1351289	1206603592	PD9774b	17	61312840	T	C	TANC2	CCDS45754.1	r.?	-	-	intronic	32	0	0	49	15	30.6122449	0	0	NA	0	0	NA	2	2	0	1	NA	NA	NA	unphased	1.974983542	0.987491771	2	0	1	0	0	2	4.10E-23	1	1	1	NA	NA	NA	NA
1351289	1206604175	PD9774b	17	66459309	T	C	-	-	-	-	-	-	24	0	0	65	23	35.38461538	0	0	NA	0	0	NA	2	2	0	1	NA	NA	NA	unphased	2.282878412	1.141439206	2	0	1	0	0	2	2.21E-36	1	1	1	NA	NA	NA	NA
1351289	1206604265	PD9774b	17	67205081	G	C	ABCA10	CCDS11684.1	r.?	-	-	intronic	39	0	0	63	25	39.68253968	0	0	NA	0	0	NA	2	2	0	1	NA	NA	NA	unphased	2.56016385	1.280081925	2	0	0.99875	0.00125	0	2	6.06E-41	1	1	1	NA	NA	NA	NA
1351289	1206604630	PD9774b	17	70680378	A	C	SLC39A11	CCDS11690.1	r.?	-	-	intronic	44	0	0	52	5	9.615384615	0	0	NA	0	0	NA	2	2	0	1	NA	NA	NA	unphased	0.620347395	0.620347395	1	0.005	0.995	0	0	2	6.68E-06	1	1	1	NA	NA	NA	NA
1351289	1206604775	PD9774b	17	71909456	A	C	-	-	-	-	-	-	30	0	0	58	6	10.34482759	0	0	NA	0	0	NA	2	2	0	1	NA	NA	NA	unphased	0.667408231	0.667408231	1	0.00375	0.99625	0	0	2	5.06E-07	1	1	1	NA	NA	NA	NA
1351289	1206605082	PD9774b	17	74609865	G	C	-	-	-	-	-	-	39	0	0	51	13	25.49019608	0	0	NA	0	0	NA	2	2	0	1	NA	NA	NA	unphased	1.644528779	0.82226439	2	0.00125	0.99875	0	0	2	4.87E-19	1	1	1	NA	NA	NA	NA
1351289	1206605411	PD9774b	17	77653112	G	C	-	-	-	-	-	-	26	0	0	26	10	38.46153846	0	0	NA	0	0	NA	2	2	0	1	NA	NA	NA	unphased	2.481389578	1.240694789	2	0	0.99875	0.00125	0	2	4.82E-17	1	1	1	NA	NA	NA	NA
1351289	1206605573	PD9774b	17	78740672	G	C	RPTOR	CCDS11773.1	r.?	-	-	intronic	28	0	0	55	7	12.72727273	0	0	NA	0	0	NA	2	2	0	1	NA	NA	NA	unphased	0.82111437	0.82111437	1	0.0025	0.9975	0	0	2	1.28E-08	1	1	1	NA	NA	NA	NA
1351289	1206605607	PD9774b	17	79020699	G	C	BAIAP2	CCDS45806.1	r.?	-	-	intronic	33	0	0	40	13	32.5	0	0	NA	0	0	NA	2	2	0	1	NA	NA	NA	unphased	2.096774194	1.048387097	2	0	1	0	0	2	1.30E-20	1	1	1	NA	NA	NA	NA
1351289	1206606025	PD9774b	18	479503	G	C	COLEC12	CCDS32782.1	r.?	-	-	intronic	39	0	0	32	9	28.125	0	0	NA	0	0	NA	1.612613399	1	0	0.387386601	1	1	0.612613399	unphased	1.705563648	1.705563648	1	0	0.98875	0.01125	0	2	4.94E-14	1	1	1	NA	NA	NA	NA
1351289	1206606137	PD9774b	18	1829703	T	C	-	-	-	-	-	-	31	0	0	49	4	8.163265306	0	0	NA	0	0	NA	1.612613399	1	0	0.387386601	1	1	0.612613399	unphased	0.495038882	0.808077137	0.612613399	0.00375	0.995	0.00125	0	2	0.000110643	1	1	1	NA	NA	NA	NA
1351289	1206606164	PD9774b	18	2027730	A	C	-	-	-	-	-	-	47	0	0	57	5	8.771929825	0	0	NA	0	0	NA	1.612613399	1	0	0.387386601	1	1	0.612613399	unphased	0.531949676	0.868328502	0.612613399	0.00125	0.9975	0.00125	0	2	1.05E-05	1	1	1	NA	NA	NA	NA
1351289	1206606590	PD9774b	18	7172135	T	C	-	-	-	-	-	-	34	0	0	44	10	22.72727273	0	0	NA	0	0	NA	1.612613399	1	0	0.387386601	1	1	0.612613399	unphased	1.378233251	1.378233251	1	0	0.99375	0.00625	0	2	2.08E-14	1	1	1	NA	NA	NA	NA
1351289	1206606681	PD9774b	18	8372198	T	C	PTPRM	CCDS11840.1	r.?	-	-	intronic	24	0	0	45	8	17.77777778	0	0	NA	0	0	NA	1.612613399	1	0	0.387386601	1	1	0.612613399	unphased	1.078084676	1.078084676	1	0.0025	0.9975	0	0	2	7.14E-11	1	1	1	NA	NA	NA	NA
1351289	1206606689	PD9774b	18	8542538	T	C	-	-	-	-	-	-	34	0	0	53	6	11.32075472	0	0	NA	0	0	NA	1.612613399	1	0	0.387386601	1	1	0.612613399	unphased	0.686516185	1.120635275	0.612613399	0	0.9975	0.0025	0	2	2.93E-07	1	1	1	NA	NA	NA	NA
1351289	1206607077	PD9774b	18	12798540	G	C	PTPN2	CCDS11865.1	r.?	-	-	intronic	21	0	0	47	5	10.63829787	0	0	NA	0	0	NA	1.612613399	1	0	0.387386601	1	1	0.612613399	unphased	0.645130458	1.053079248	0.612613399	0	1	0	0	2	4.02E-06	1	1	1	NA	NA	NA	NA
1351289	1206607121	PD9774b	18	13308917	T	C	C18orf1	CCDS32793.1	r.?	-	-	intronic	42	0	0	46	5	10.86956522	0	0	NA	0	0	NA	1.612613399	1	0	0.387386601	1	1	0.612613399	unphased	0.659155033	1.075972275	0.612613399	0.00375	0.99625	0	0	2	3.61E-06	1	1	1	NA	NA	NA	NA
1351289	1206607672	PD9774b	18	15118748	T	C	-	-	-	-	-	-	34	0	0	40	4	10	0	0	NA	0	0	NA	1.612613399	1	0	0.387386601	1	1	0.612613399	unphased	0.60642263	0.989894493	0.612613399	0.00125	0.99875	0	0	2	4.95E-05	1	1	1	NA	NA	NA	NA
1351289	1206609028	PD9774b	18	18980473	G	C	GREB1L	CCDS45836.1	r.?	-	-	intronic	31	0	0	62	9	14.51612903	0	0	NA	0	0	NA	1.612613399	1	0	0.387386601	1	1	0.612613399	unphased	0.880290915	0.880290915	1	0.00125	0.9975	0.00125	0	2	3.12E-11	1	1	1	NA	NA	NA	NA
1351289	1206609033	PD9774b	18	19042222	T	C	GREB1L	CCDS45836.1	r.?	-	-	intronic	33	0	0	52	12	23.07692308	0	0	NA	1	0	0	1.612613399	1	0	0.387386601	1	1	0.612613399	unphased	1.399436839	1.399436839	1	0	0.9925	0.0075	0	2	4.19E-17	1	1	1	NA	NA	NA	NA
1351289	1206609179	PD9774b	18	20211236	A	C	-	-	-	-	-	-	37	0	0	48	7	14.58333333	0	0	NA	0	0	NA	1.612613399	1	0	0.387386601	1	1	0.612613399	unphased	0.884366336	0.884366336	1	0.00375	0.995	0.00125	0	2	4.81E-09	1	1	1	NA	NA	NA	NA
1351289	1206609199	PD9774b	18	20455622	T	C	-	-	-	-	-	-	37	0	0	42	7	16.66666667	0	0	NA	0	0	NA	0.766536695	0	0	0.233463305	1	0	0.766536695	unphased	0.8696916	0.8696916	1	0.00125	0.99875	0	0	2	1.81E-09	1	1	1	NA	NA	NA	NA
1351289	1206609538	PD9774b	18	24448266	T	C	AQP4	CCDS11889.1	r.?	-	-	upstream	41	0	0	48	10	20.83333333	212	0	0	310	42	13.5483871	0.766536695	0	0	0.233463305	1	0	0.766536695	unphased	1.0871145	1.0871145	1	0	1	0	0	2	5.37E-14	1	1.03E-45	1	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206609872	PD9774b	18	29024171	G	C	DSG3	CCDS11898.1	r.?	-	-	upstream	36	0	0	47	4	8.510638298	0	0	NA	0	0	NA	0.766536695	0	0	0.233463305	1	0	0.766536695	unphased	0.444097838	0.579356267	0.766536695	0.00625	0.99375	0	0	2	9.39E-05	1	1	1	NA	NA	NA	NA
1351289	1206610005	PD9774b	18	31125089	T	C	-	-	-	-	-	-	29	0	0	56	15	26.78571429	0	0	NA	0	0	NA	1.731976103	1	0	0.268023897	1	1	0.731976103	unphased	1.656318484	1.656318484	1	0	0.9725	0.0275	0	2	4.09E-22	1	1	1	NA	NA	NA	NA
1351289	1206610047	PD9774b	18	31851021	A	C	-	-	-	-	-	-	35	0	0	54	6	11.11111111	0	0	NA	0	0	NA	1.731976103	1	0	0.268023897	1	1	0.731976103	unphased	0.687065445	0.938644639	0.731976103	0.00125	0.99875	0	0	2	3.29E-07	1	1	1	NA	NA	NA	NA
1351289	1206610559	PD9774b	18	38780721	T	C	-	-	-	-	-	-	38	0	0	56	10	17.85714286	0	0	NA	0	0	NA	1.731976103	1	0	0.268023897	1	1	0.731976103	unphased	1.104212323	1.104212323	1	0	0.99875	0.00125	0	2	2.82E-13	1	1	1	NA	NA	NA	NA
1351289	1206610617	PD9774b	18	39380965	G	C	-	-	-	-	-	-	33	0	0	44	6	13.63636364	0	0	NA	0	0	NA	1.731976103	1	0	0.268023897	1	1	0.731976103	unphased	0.843216683	1.151972966	0.731976103	0	0.99875	0.00125	0	2	9.37E-08	1	1	1	NA	NA	NA	NA
1351289	1206610971	PD9774b	18	44781708	G	C	-	-	-	-	-	-	39	0	0	47	6	12.76595745	185	1	0.540540541	117	15	12.82051282	1.731976103	1	0	0.268023897	1	1	0.731976103	unphased	0.789394341	1.078442777	0.731976103	0	0.99625	0.00375	0	2	1.41E-07	1	5.97E-17	0.604387561	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206611157	PD9774b	18	46815653	G	C	DYM	CCDS11937.1	r.?	-	-	intronic	44	0	0	58	5	8.620689655	0	0	NA	0	0	NA	1.731976103	1	0	0.268023897	1	1	0.731976103	unphased	0.533068018	0.728258772	0.731976103	0.00125	0.99875	0	0	2	1.15E-05	1	1	1	NA	NA	NA	NA
1351289	1206611352	PD9774b	18	49334540	A	C	-	-	-	-	-	-	31	0	0	54	5	9.259259259	0	0	NA	0	0	NA	1.731976103	1	0	0.268023897	1	1	0.731976103	unphased	0.572554538	0.782203866	0.731976103	0.00125	0.9975	0.00125	0	2	8.06E-06	1	1	1	NA	NA	NA	NA
1351289	1206611636	PD9774b	18	53194023	G	C	TCF4	CCDS42438.1	r.?	-	-	intronic	44	0	0	43	4	9.302325581	0	0	NA	0	0	NA	1.731976103	1	0	0.268023897	1	1	0.731976103	unphased	0.575217582	0.785842023	0.731976103	0.00125	0.99625	0.0025	0	2	6.60E-05	1	1	1	NA	NA	NA	NA
1351289	1206611644	PD9774b	18	53359692	T	C	-	-	-	-	-	-	33	0	0	51	8	15.68627451	0	0	NA	0	0	NA	1.731976103	1	0	0.268023897	1	1	0.731976103	unphased	0.969974746	0.969974746	1	0.00125	0.99875	0	0	2	2.05E-10	1	1	1	NA	NA	NA	NA
1351289	1206611688	PD9774b	18	54007391	A	C	-	-	-	-	-	-	33	0	0	62	4	6.451612903	0	0	NA	0	0	NA	1.731976103	1	0	0.268023897	1	1	0.731976103	unphased	0.398941226	0.545019468	0.731976103	0.00375	0.99625	0	0	2	0.000276647	1	1	1	NA	NA	NA	NA
1351289	1206611866	PD9774b	18	55823573	T	C	NEDD4L	CCDS45872.1	r.?	-	-	intronic	28	0	0	60	6	10	0	0	NA	0	0	NA	1.731976103	1	0	0.268023897	1	1	0.731976103	unphased	0.618358901	0.844780175	0.731976103	0.00125	0.9975	0.00125	0	2	6.21E-07	1	1	1	NA	NA	NA	NA
1351289	1206611930	PD9774b	18	56733385	A	C	-	-	-	-	-	-	34	0	0	55	5	9.090909091	0	0	NA	0	0	NA	1.731976103	1	0	0.268023897	1	1	0.731976103	unphased	0.562144455	0.767981977	0.731976103	0.0025	0.9975	0	0	2	8.83E-06	1	1	1	NA	NA	NA	NA
1351289	1206611997	PD9774b	18	57526319	T	C	-	-	-	-	-	-	34	0	0	49	8	16.32653061	0	0	NA	0	0	NA	1.731976103	1	0	0.268023897	1	1	0.731976103	unphased	1.009565552	1.009565552	1	0.00125	0.9975	0.00125	0	2	1.47E-10	1	1	1	NA	NA	NA	NA
1351289	1206612133	PD9774b	18	59618957	G	C	-	-	-	-	-	-	27	0	0	43	5	11.62790698	0	0	NA	0	0	NA	1.731976103	1	0	0.268023897	1	1	0.731976103	unphased	0.719021978	0.982302529	0.731976103	0.00125	0.9975	0.00125	0	2	2.57E-06	1	1	1	NA	NA	NA	NA
1351289	1206612165	PD9774b	18	60045591	G	C	TNFRSF11A	CCDS11980.1	r.?	-	-	intronic	46	0	0	55	5	9.090909091	0	0	NA	0	0	NA	1.731976103	1	0	0.268023897	1	1	0.731976103	unphased	0.562144455	0.767981977	0.731976103	0.00125	0.99625	0.0025	0	2	8.83E-06	1	1	1	NA	NA	NA	NA
1351289	1206612192	PD9774b	18	60379436	T	C	PHLPP1	CCDS45881.1	r.?	-	-	upstream	40	0	0	61	6	9.836065574	0	0	NA	0	0	NA	1.731976103	1	0	0.268023897	1	1	0.731976103	unphased	0.60822187	0.83093132	0.731976103	0.00125	0.9975	0.00125	0	2	6.85E-07	1	1	1	NA	NA	NA	NA
1351289	1206612224	PD9774b	18	60755212	A	C	-	-	-	-	-	-	32	0	0	36	7	19.44444444	0	0	NA	0	0	NA	1.731976103	1	0	0.268023897	1	1	0.731976103	unphased	1.202364529	1.202364529	1	0	0.99875	0.00125	0	2	5.74E-10	1	1	1	NA	NA	NA	NA
1351289	1206612265	PD9774b	18	61334960	G	C	-	-	-	-	-	-	35	0	0	56	5	8.928571429	0	0	NA	0	0	NA	1.731976103	1	0	0.268023897	1	1	0.731976103	unphased	0.552106161	0.754268013	0.731976103	0.00125	0.99875	0	0	2	9.65E-06	1	1	1	NA	NA	NA	NA
1351289	1206612503	PD9774b	18	64223435	T	C	CDH19	CCDS11994.1	r.?	-	-	intronic	41	0	0	52	5	9.615384615	0	0	NA	0	0	NA	1.731976103	1	0	0.268023897	1	1	0.731976103	unphased	0.594575866	0.81228863	0.731976103	0	1	0	0	2	6.68E-06	1	1	1	NA	NA	NA	NA
1351289	1206612573	PD9774b	18	65045506	T	C	-	-	-	-	-	-	31	0	0	42	4	9.523809524	0	0	NA	0	0	NA	1.731976103	1	0	0.268023897	1	1	0.731976103	unphased	0.588913239	0.804552548	0.731976103	0.00375	0.99625	0	0	2	6.01E-05	1	1	1	NA	NA	NA	NA
1351289	1206612968	PD9774b	18	69644018	T	C	-	-	-	-	-	-	40	0	0	60	7	11.66666667	186	0	0	213	31	14.55399061	1.731976103	1	0	0.268023897	1	1	0.731976103	unphased	0.721418717	0.985576871	0.731976103	0	1	0	0	2	2.39E-08	1	3.57E-35	1	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206612972	PD9774b	18	69671381	G	C	-	-	-	-	-	-	51	0	0	62	5	8.064516129	0	0	NA	0	0	NA	1.731976103	1	0	0.268023897	1	1	0.731976103	unphased	0.498676533	0.681274335	0.731976103	0.00375	0.99625	0	0	2	1.60E-05	1	1	1	NA	NA	NA	NA
1351289	1206613242	PD9774b	18	73033496	G	C	-	-	-	-	-	-	31	0	0	53	5	9.433962264	2	0	0	0	0	NA	1.731976103	1	0	0.268023897	1	1	0.731976103	unphased	0.583357453	0.796962429	0.731976103	0.00375	0.99625	0	0	2	7.34E-06	1	1	1	NA	NA	NA	NA
1351289	1206613274	PD9774b	18	73458268	T	C	-	-	-	-	-	-	35	0	0	57	11	19.29824561	152	0	0	135	13	9.62962963	1.731976103	1	0	0.268023897	1	1	0.731976103	unphased	1.193324194	1.193324194	1	0	0.99875	0.00125	0	2	7.29E-15	1	3.03E-13	1	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206613881	PD9774b	18	77681137	G	C	PQLC1	CCDS12020.1	r.?	-	-	intronic	7	0	0	28	7	25	0	0	NA	0	0	NA	1.731976103	1	0	0.268023897	1	1	0.731976103	unphased	1.545897252	1.545897252	1	0	0.99	0.01	0	2	8.44E-11	1	1	1	NA	NA	NA	NA
1351289	1206614020	PD9774b	19	634381	T	C	POLRMT	CCDS12036.1	r.?	-	-	upstream	30	0	0	49	5	10.20408163	0	0	NA	0	0	NA	0.57410024	0	0	0.42589976	1	0	0.57410024	unphased	0.512827872	0.893272352	0.57410024	0.00125	0.99875	0	0	2	4.96E-06	1	1	1	NA	NA	NA	NA
1351289	1206615170	PD9774b	19	10940407	G	C	DNM2	CCDS45969.1	r.?	-	-	intronic	28	0	0	56	5	8.928571429	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.397465438	0.397465438	1	0.03875	0.96125	0	0	2	9.65E-06	1	1	1	NA	NA	NA	NA
1351289	1206615865	PD9774b	19	17478469	A	C	PLVAP	CCDS32952.1	r.?	-	-	intronic	36	0	0	50	8	16	0	0	NA	0	0	NA	1.527660281	1	0	0.472339719	1	1	0.527660281	unphased	0.95668371	0.95668371	1	0	1	0	0	2	1.74E-10	1	1	1	NA	NA	NA	NA
1351289	1206616017	PD9774b	19	18869431	G	C	CRTC1	CCDS42525.1	r.?	-	-	intronic	36	0	0	54	4	7.407407407	0	0	NA	0	0	NA	1.527660281	1	0	0.472339719	1	1	0.527660281	unphased	0.442909125	0.839383104	0.527660281	0	0.99875	0.00125	0	2	0.000161898	1	1	1	NA	NA	NA	NA
1351289	1206616155	PD9774b	19	20229611	G	C	ZNF90	CCDS46028.1	r.1360g>c	c.1248G>C	p.K416N	missense	45	0	0	80	7	8.75	0	0	NA	0	0	NA	1.527660281	1	0	0.472339719	1	1	0.527660281	unphased	0.523186404	0.991521292	0.527660281	0.00125	0.9975	0.00125	0	2	1.80E-07	1	1	1	NA	NA	NA	NA
1351289	1206616425	PD9774b	19	22127519	T	C	-	-	-	-	-	-	30	0	0	54	8	14.81481481	0	0	NA	0	0	NA	1.527660281	1	0	0.472339719	1	1	0.527660281	unphased	0.88581825	0.88581825	1	0	1	0	0	2	3.31E-10	1	1	1	NA	NA	NA	NA
1351289	1206616499	PD9774b	19	22834301	G	C	ZNF492	CCDS46032.1	r.?	-	-	intronic	25	0	0	48	4	8.333333333	0	0	NA	0	0	NA	1.527660281	1	0	0.472339719	1	1	0.527660281	unphased	0.498272765	0.944305992	0.527660281	0.00375	0.99375	0.0025	0	2	0.000102016	1	1	1	NA	NA	NA	NA
1351289	1206617793	PD9774b	19	30242842	T	C	-	-	-	-	-	-	25	0	0	59	6	10.16949153	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.554401312	0.554401312	1	0.01	0.99	0	0	2	5.61E-07	1	1	1	NA	NA	NA	NA
1351289	1206617819	PD9774b	19	30396383	T	C	-	-	-	-	-	-	37	0	0	67	8	11.94029851	2	0	0	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.650938854	0.650938854	1	0.0025	0.9975	0	0	2	1.96E-09	1	1	1	NA	NA	NA	NA
1351289	1206618106	PD9774b	19	33519438	G	C	RHPN2	CCDS12427.1	r.?	-	-	intronic	37	0	0	54	6	11.11111111	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.605734767	0.605734767	1	0.0025	0.9975	0	0	2	3.29E-07	1	1	1	NA	NA	NA	NA
1351289	1206618274	PD9774b	19	35217276	T	C	-	-	-	-	-	-	34	0	0	48	7	14.58333333	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.795026882	0.795026882	1	0.0025	0.9975	0	0	2	4.81E-09	1	1	1	NA	NA	NA	NA
1351289	1206618300	PD9774b	19	35614844	T	C	FXYD3	CCDS46048.1	r.1065u>c	c.?	p.?	3'UTR variant	27	0	0	46	5	10.86956522	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.59256662	0.59256662	1	0.00625	0.99375	0	0	2	3.61E-06	1	1	1	NA	NA	NA	NA
1351289	1206618311	PD9774b	19	35778290	T	C	MAG	CCDS12456.1	r.?	-	-	upstream	28	0	0	63	6	9.523809524	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.519201229	0.519201229	1	0.01125	0.98875	0	0	2	8.32E-07	1	1	1	NA	NA	NA	NA
1351289	1206618380	PD9774b	19	36397524	G	C	TYROBP	CCDS12482.1	r.?	-	-	intronic	24	0	0	55	15	27.27272727	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.486803519	1.486803519	1	0	0.99375	0.00625	0	2	3.01E-22	1	1	1	NA	NA	NA	NA
1351289	1206618398	PD9774b	19	36570560	T	C	WDR62	CCDS46059.1	r.?	-	-	intronic	33	0	0	42	4	9.523809524	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.519201229	0.519201229	1	0.0075	0.9925	0	0	2	6.01E-05	1	1	1	NA	NA	NA	NA
1351289	1206618751	PD9774b	19	39328509	G	C	HNRNPL	CCDS33015.1	r.?	-	-	intronic	37	0	0	62	9	14.51612903	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.791363163	0.791363163	1	0	1	0	0	2	3.12E-11	1	1	1	NA	NA	NA	NA
1351289	1206619112	PD9774b	19	42809494	G	C	PRR19	CCDS33036.1	r.?	-	-	intronic	21	0	0	49	11	22.44897959	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.223831468	1.223831468	1	0	0.99875	0.00125	0	2	1.19E-15	1	1	1	NA	NA	NA	NA
1351289	1206619220	PD9774b	19	43791500	G	C	-	-	-	-	-	-	16	0	0	37	13	35.13513514	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.915431561	1.915431561	1	0	0.93375	0.06625	0	2	3.89E-21	1	1	1	NA	NA	NA	NA
1351289	1206619285	PD9774b	19	44334724	G	C	ZNF230	CCDS46097.1	r.?	-	-	intronic	34	0	0	67	9	13.43283582	2	0	0	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.732306211	0.732306211	1	0.00125	0.99875	0	0	2	6.43E-11	1	1	1	NA	NA	NA	NA
1351289	1206619295	PD9774b	19	44381189	A	C	ZNF230	ENST00000421176	r.?	-	-	intronic	31	0	0	62	11	17.74193548	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.967221644	0.967221644	1	0	0.99875	0.00125	0	2	1.96E-14	1	1	1	NA	NA	NA	NA
1351289	1206619330	PD9774b	19	44799087	T	C	ZNF235	CCDS33048.1	r.?	-	-	intronic	49	0	0	69	11	15.94202899	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.869097709	0.869097709	1	0	1	0	0	2	6.82E-14	1	1	1	NA	NA	NA	NA
1351289	1206619394	PD9774b	19	44917750	T	C	-	-	-	-	-	-	44	0	0	44	12	27.27272727	0	0	NA	1	0	0	1	1	0	1	NA	NA	NA	unphased	1.486803519	1.486803519	1	0	0.98375	0.01625	0	2	4.44E-18	1	1	1	NA	NA	NA	NA
1351289	1206619887	PD9774b	19	48980058	A	C	CYTH2	CCDS12722.1	r.?	-	-	intronic	38	0	0	69	4	5.797101449	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.316035531	0.316035531	1	0.05875	0.94125	0	0	2	0.000416985	1	1	1	NA	NA	NA	NA
1351289	1206619963	PD9774b	19	49499402	T	C	GYS1	CCDS12747.1	r.?	-	-	upstream	30	0	0	48	11	22.91666667	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.249327957	1.249327957	1	0	0.9975	0.0025	0	2	9.31E-16	1	1	1	NA	NA	NA	NA
1351289	1206620378	PD9774b	19	52836397	T	C	ZNF610	CCDS12851.1	r.?	-	-	upstream	30	0	0	48	7	14.58333333	0	0	NA	0	0	NA	1.434080173	1	0	0.565919827	1	1	0.434080173	unphased	0.85833024	0.85833024	1	0	1	0	0	2	4.81E-09	1	1	1	NA	NA	NA	NA
1351289	1206620387	PD9774b	19	52914445	A	C	ZNF528	CCDS33091.1	r.?	-	-	intronic	33	0	0	47	12	25.53191489	0	0	NA	0	0	NA	1.434080173	1	0	0.565919827	1	1	0.434080173	unphased	1.502730147	1.502730147	1	0	0.98875	0.01125	0	2	1.09E-17	1	1	1	NA	NA	NA	NA
1351289	1206620396	PD9774b	19	52980937	T	C	-	-	-	-	-	-	29	0	0	53	11	20.75471698	0	0	NA	0	0	NA	1.434080173	1	0	0.565919827	1	1	0.434080173	unphased	1.22155894	1.22155894	1	0	0.9975	0.0025	0	2	3.07E-15	1	1	1	NA	NA	NA	NA
1351289	1206620928	PD9774b	19	56441277	T	C	NLRP13	CCDS33119.1	r.?	-	-	intronic	40	0	0	53	5	9.433962264	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	0.702982349	0.702982349	1	0.0025	0.9975	0	0	2	7.34E-06	1	1	1	NA	NA	NA	NA
1351289	1206621053	PD9774b	19	57197880	A	C	-	-	-	-	-	-	28	0	0	56	4	7.142857143	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	0.532258065	0.532258065	1	0.0075	0.9925	0	0	2	0.000186538	1	1	1	NA	NA	NA	NA
1351289	1206621228	PD9774b	19	58625499	G	C	ZSCAN18	CCDS46214.1	r.?	-	-	intronic	26	0	0	66	6	9.090909091	1	0	0	0	0	NA	3	2	1	1	NA	NA	NA	unphased	0.677419355	0.677419355	1	0.00375	0.99625	0	0	2	1.10E-06	1	1	1	NA	NA	NA	NA
1351289	1206621792	PD9774b	2	4025087	T	C	-	-	-	-	-	-	37	0	0	54	8	14.81481481	0	0	NA	0	0	NA	0.762600955	0	0	0.237399045	1	0	0.762600955	unphased	0.772476127	1.01294933	0.762600955	0	0.99875	0.00125	0	2	3.31E-10	1	1	1	NA	NA	NA	NA
1351289	1206622106	PD9774b	2	7437039	G	C	ENSG00000234603	ENST00000441133	r.?	-	-	intronic	30	0	0	42	8	19.04761905	0	0	NA	0	0	NA	0.762600955	0	0	0.237399045	1	0	0.762600955	unphased	0.993183592	0.993183592	1	0	0.99625	0.00375	0	2	3.96E-11	1	1	1	NA	NA	NA	NA
1351289	1206623101	PD9774b	2	20426372	G	C	SDC1	CCDS1697.1	r.?	-	-	upstream	24	0	0	59	13	22.03389831	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.421541826	1.421541826	1	0	0.99625	0.00375	0	2	3.99E-18	1	1	1	NA	NA	NA	NA
1351289	1206623105	PD9774b	2	20469184	G	C	PUM2	CCDS1698.1	r.?	-	-	intronic	29	0	0	64	8	12.5	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.806451613	0.806451613	1	0.005	0.995	0	0	2	1.35E-09	1	1	1	NA	NA	NA	NA
1351289	1206623169	PD9774b	2	21353336	G	C	ENSG00000218819	ENST00000405799	r.?	-	-	intronic	36	0	0	59	9	15.25423729	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.984144341	0.984144341	1	0.00125	0.9975	0.00125	0	2	1.96E-11	1	1	1	NA	NA	NA	NA
1351289	1206623299	PD9774b	2	23306701	T	C	-	-	-	-	-	-	40	0	0	76	8	10.52631579	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	0.784380306	0.784380306	1	0	1	0	0	2	5.44E-09	1	1	1	NA	NA	NA	NA
1351289	1206623327	PD9774b	2	23724798	G	C	KLHL29	ENST00000486442	r.?	-	-	intronic	31	0	0	59	7	11.86440678	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	0.884089666	0.884089666	1	0.00125	0.99875	0	0	2	2.12E-08	1	1	1	NA	NA	NA	NA
1351289	1206623419	PD9774b	2	24359177	A	C	C2orf84	ENST00000407625	r.?	-	-	intronic	42	0	0	69	7	10.14492754	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	0.755960729	0.755960729	1	0	1	0	0	2	6.43E-08	1	1	1	NA	NA	NA	NA
1351289	1206623420	PD9774b	2	24359872	G	C	C2orf84	ENST00000407625	r.?	-	-	intronic	32	0	0	58	6	10.34482759	0	0	NA	1	0	0	3	2	1	1	NA	NA	NA	unphased	0.770856507	0.770856507	1	0.005	0.995	0	0	2	5.06E-07	1	1	1	NA	NA	NA	NA
1351289	1206623528	PD9774b	2	25098241	T	C	ADCY3	CCDS1715.1	r.?	-	-	intronic	28	0	0	36	8	22.22222222	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	1.655913978	1.655913978	1	0.00125	0.99125	0.0075	0	2	1.04E-11	1	1	1	NA	NA	NA	NA
1351289	1206623567	PD9774b	2	25270221	G	C	EFR3B	CCDS46231.1	r.?	-	-	intronic	24	0	0	65	5	7.692307692	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	0.573200993	0.573200993	1	0.00375	0.99625	0	0	2	2.01E-05	1	1	1	NA	NA	NA	NA
1351289	1206623609	PD9774b	2	25575628	G	C	-	-	-	-	-	-	21	0	0	61	5	8.196721311	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	0.610787943	0.610787943	1	0.005	0.995	0	0	2	1.47E-05	1	1	1	NA	NA	NA	NA
1351289	1206623724	PD9774b	2	26377121	T	C	-	-	-	-	-	-	40	0	0	67	6	8.955223881	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	0.667308618	0.667308618	1	0	1	0	0	2	1.20E-06	1	1	1	NA	NA	NA	NA
1351289	1206623736	PD9774b	2	26489806	T	C	HADHB	CCDS1722.1	r.?	-	-	intronic	24	0	0	46	12	26.08695652	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	1.943899018	0.971949509	2	0.0025	0.9975	0	0	2	8.12E-18	1	1	1	NA	NA	NA	NA
1351289	1206623761	PD9774b	2	26714472	G	C	OTOF	CCDS1725.1	r.?	-	-	intronic	31	0	0	66	6	9.090909091	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	0.677419355	0.677419355	1	0.0025	0.9975	0	0	2	1.10E-06	1	1	1	NA	NA	NA	NA
1351289	1206623835	PD9774b	2	27285458	T	C	AGBL5	CCDS1732.3	r.?	-	-	intronic	40	0	0	54	11	20.37037037	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	1.517921147	1.517921147	1	0	0.995	0.005	0	2	3.84E-15	1	1	1	NA	NA	NA	NA
1351289	1206623977	PD9774b	2	28563234	G	C	BRE	CCDS1764.1	r.?	-	-	downstream	36	0	0	74	12	16.21621622	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	1.20836966	1.20836966	1	0	0.99625	0.00375	0	2	4.02E-15	1	1	1	NA	NA	NA	NA
1351289	1206624006	PD9774b	2	28754010	G	C	PLB1	CCDS33168.1	r.?	-	-	intronic	29	0	0	67	5	7.462686567	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	0.556090515	0.556090515	1	0.0075	0.9925	0	0	2	2.33E-05	1	1	1	NA	NA	NA	NA
1351289	1206624152	PD9774b	2	30089468	G	C	ALK	CCDS33172.1	r.?	-	-	intronic	40	0	0	61	4	6.557377049	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	0.488630354	0.488630354	1	0.005	0.995	0	0	2	0.000259828	1	1	1	NA	NA	NA	NA
1351289	1206624307	PD9774b	2	31821685	T	C	-	-	-	-	-	-	24	0	0	52	6	11.53846154	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	0.859801489	0.859801489	1	0.00125	0.99875	0	0	2	2.61E-07	1	1	1	NA	NA	NA	NA
1351289	1206624325	PD9774b	2	32135713	G	C	MEMO1	CCDS46255.1	r.?	-	-	intronic	32	0	0	69	4	5.797101449	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	0.43197756	0.43197756	1	0.0175	0.9825	0	0	2	0.000416985	1	1	1	NA	NA	NA	NA
1351289	1206624359	PD9774b	2	32415003	G	C	SLC30A6	CCDS1780.1	r.?	-	-	intronic	28	0	0	59	18	30.50847458	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	2.273373428	1.136686714	2	0	1	0	0	2	2.03E-27	1	1	1	NA	NA	NA	NA
1351289	1206624441	PD9774b	2	33371700	A	C	LTBP1	CCDS33177.1	r.?	-	-	intronic	44	0	0	69	9	13.04347826	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	0.971949509	0.971949509	1	0.0025	0.9975	0	0	2	8.45E-11	1	1	1	NA	NA	NA	NA
1351289	1206624462	PD9774b	2	33644163	T	C	-	-	-	-	-	-	26	0	0	65	8	12.30769231	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	0.917121588	0.917121588	1	0	1	0	0	2	1.53E-09	1	1	1	NA	NA	NA	NA
1351289	1206624555	PD9774b	2	34672485	T	C	-	-	-	-	-	-	35	0	0	59	10	16.94915254	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	1.262985238	1.262985238	1	0	0.99625	0.00375	0	2	4.91E-13	1	1	1	NA	NA	NA	NA
1351289	1206624574	PD9774b	2	34943959	G	C	-	-	-	-	-	-	41	0	0	62	7	11.29032258	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	0.841311134	0.841311134	1	0.00125	0.99875	0	0	2	3.02E-08	1	1	1	NA	NA	NA	NA
1351289	1206624612	PD9774b	2	35314198	G	C	-	-	-	-	-	-	30	0	0	66	5	7.575757576	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	0.564516129	0.564516129	1	0.0025	0.9975	0	0	2	2.17E-05	1	1	1	NA	NA	NA	NA
1351289	1206624649	PD9774b	2	35686091	G	C	-	-	-	-	-	-	34	0	0	50	10	20	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	1.490322581	1.490322581	1	0	0.9925	0.0075	0	2	8.36E-14	1	1	1	NA	NA	NA	NA
1351289	1206624692	PD9774b	2	36000912	G	C	-	-	-	-	-	-	50	0	0	78	6	7.692307692	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	0.573200993	0.573200993	1	0.00125	0.99875	0	0	2	2.95E-06	1	1	1	NA	NA	NA	NA
1351289	1206625243	PD9774b	2	40087698	T	C	-	-	-	-	-	-	39	0	0	67	7	10.44776119	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	0.778526721	0.778526721	1	0.0025	0.9975	0	0	2	5.23E-08	1	1	1	NA	NA	NA	NA
1351289	1206625245	PD9774b	2	40106997	A	C	-	-	-	-	-	-	40	0	0	58	4	6.896551724	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	0.513904338	0.513904338	1	0.0075	0.9925	0	0	2	0.000213772	1	1	1	NA	NA	NA	NA
1351289	1206625255	PD9774b	2	40270407	A	C	-	-	-	-	-	-	36	0	0	71	5	7.042253521	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	0.524761472	0.524761472	1	0.00625	0.99375	0	0	2	3.09E-05	1	1	1	NA	NA	NA	NA
1351289	1206625325	PD9774b	2	40887314	A	C	-	-	-	-	-	-	30	0	0	60	13	21.66666667	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	1.614516129	0.807258065	2	0.0025	0.9975	0	0	2	5.07E-18	1	1	1	NA	NA	NA	NA
1351289	1206625407	PD9774b	2	41492012	G	C	-	-	-	-	-	-	43	0	0	74	10	13.51351351	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	1.006974717	1.006974717	1	0	1	0	0	2	5.24E-12	1	1	1	NA	NA	NA	NA
1351289	1206625493	PD9774b	2	42600148	A	C	COX7A2L	CCDS1808.1	r.?	-	-	upstream	19	0	0	58	7	12.06896552	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.778642937	0.778642937	1	0.00375	0.995	0.00125	0	2	1.88E-08	1	1	1	NA	NA	NA	NA
1351289	1206625615	PD9774b	2	44040628	G	C	ABCG5	CCDS1814.1	r.?	-	-	intronic	35	0	0	34	4	11.76470588	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.759013283	0.759013283	1	0.0025	0.9975	0	0	2	2.57E-05	1	1	1	NA	NA	NA	NA
1351289	1206625796	PD9774b	2	46344430	T	C	PRKCE	CCDS1824.1	r.?	-	-	intronic	28	0	0	65	10	15.38461538	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.992555831	0.992555831	1	0.00125	0.99875	0	0	2	1.36E-12	1	1	1	NA	NA	NA	NA
1351289	1206625826	PD9774b	2	46731834	T	C	-	-	-	-	-	-	33	0	0	58	8	13.79310345	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.889877642	0.889877642	1	0.0025	0.9975	0	0	2	5.99E-10	1	1	1	NA	NA	NA	NA
1351289	1206625979	PD9774b	2	48311796	T	C	-	-	-	-	-	-	23	0	0	70	14	20	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.290322581	1.290322581	1	0	0.99875	0.00125	0	2	9.08E-19	1	1	1	NA	NA	NA	NA
1351289	1206626089	PD9774b	2	49563315	T	C	-	-	-	-	-	-	33	0	0	49	8	16.32653061	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.053324556	1.053324556	1	0.00125	0.99625	0.0025	0	2	1.47E-10	1	1	1	NA	NA	NA	NA
1351289	1206626130	PD9774b	2	50023103	T	C	-	-	-	-	-	-	40	0	0	57	6	10.52631579	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.679117148	0.679117148	1	0.005	0.995	0	0	2	4.56E-07	1	1	1	NA	NA	NA	NA
1351289	1206626377	PD9774b	2	53980343	T	C	ASB3	CCDS1847.1	r.?	-	-	intronic	38	0	0	47	9	19.14893617	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.235415237	1.235415237	1	0	0.99375	0.00625	0	2	2.24E-12	1	1	1	NA	NA	NA	NA
1351289	1206626494	PD9774b	2	55372913	G	C	-	-	-	-	-	-	34	0	0	46	7	15.2173913	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.981767181	0.981767181	1	0.0025	0.9975	0	0	2	3.53E-09	1	1	1	NA	NA	NA	NA
1351289	1206626516	PD9774b	2	55534115	G	C	CCDC88A	CCDS33203.1	r.?	-	-	intronic	37	0	0	62	5	8.064516129	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.520291363	0.520291363	1	0.01	0.99	0	0	2	1.60E-05	1	1	1	NA	NA	NA	NA
1351289	1206626518	PD9774b	2	55537539	A	C	CCDC88A	CCDS33203.1	r.?	-	-	intronic	42	0	0	40	4	10	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.64516129	0.64516129	1	0.00375	0.99625	0	0	2	4.95E-05	1	1	1	NA	NA	NA	NA
1351289	1206626711	PD9774b	2	58897329	G	C	-	-	-	-	-	-	39	0	0	47	5	10.63829787	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.686341798	0.686341798	1	0.0025	0.99625	0.00125	0	2	4.02E-06	1	1	1	NA	NA	NA	NA
1351289	1206626955	PD9774b	2	61707112	G	C	XPO1	CCDS33205.1	r.?	-	-	intronic	37	0	0	68	9	13.23529412	0	0	NA	0	0	NA	1.588737909	1	0	0.411262091	1	1	0.588737909	unphased	0.799458196	0.799458196	1	0.00125	0.99875	0	0	2	7.38E-11	1	1	1	NA	NA	NA	NA
1351289	1206627458	PD9774b	2	67438356	G	C	-	-	-	-	-	-	51	0	0	55	6	10.90909091	0	0	NA	0	0	NA	1.588737909	1	0	0.411262091	1	1	0.588737909	unphased	0.658947361	1.119254173	0.588737909	0	1	0	0	2	3.67E-07	1	1	1	NA	NA	NA	NA
1351289	1206627746	PD9774b	2	70857806	T	C	-	-	-	-	-	-	38	0	0	69	7	10.14492754	0	0	NA	0	0	NA	1.588737909	1	0	0.411262091	1	1	0.588737909	unphased	0.612789213	1.04085231	0.588737909	0	0.99875	0.00125	0	2	6.43E-08	1	1	1	NA	NA	NA	NA
1351289	1206627966	PD9774b	2	74222831	G	C	-	-	-	-	-	-	26	0	0	53	8	15.09433962	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.973828363	0.973828363	1	0	1	0	0	2	2.83E-10	1	1	1	NA	NA	NA	NA
1351289	1206627967	PD9774b	2	74239017	A	C	TET3	ENST00000409262	r.?	-	-	intronic	41	0	0	60	8	13.33333333	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.860215054	0.860215054	1	0.0025	0.9975	0	0	2	7.93E-10	1	1	1	NA	NA	NA	NA
1351289	1206628102	PD9774b	2	76323872	G	C	-	-	-	-	-	-	38	0	0	57	7	12.28070175	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.792303339	0.792303339	1	0.00125	0.99875	0	0	2	1.66E-08	1	1	1	NA	NA	NA	NA
1351289	1206628130	PD9774b	2	76664338	T	C	-	-	-	-	-	-	31	0	0	46	9	19.56521739	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.26227209	1.26227209	1	0	0.995	0.005	0	2	1.82E-12	1	1	1	NA	NA	NA	NA
1351289	1206628356	PD9774b	2	78961392	A	C	-	-	-	-	-	-	34	0	0	55	9	16.36363636	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.055718475	1.055718475	1	0	1	0	0	2	1.01E-11	1	1	1	NA	NA	NA	NA
1351289	1206628398	PD9774b	2	79383347	T	C	REG3A	CCDS1965.1	r.?	-	-	downstream	35	0	0	54	8	14.81481481	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.955794504	0.955794504	1	0	1	0	0	2	3.31E-10	1	1	1	NA	NA	NA	NA
1351289	1206628550	PD9774b	2	81032859	G	C	-	-	-	-	-	-	30	0	0	61	4	6.557377049	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.423056584	0.423056584	1	0.00875	0.99125	0	0	2	0.000259828	1	1	1	NA	NA	NA	NA
1351289	1206628625	PD9774b	2	82040585	A	C	-	-	-	-	-	-	34	0	0	48	5	10.41666667	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.672043011	0.672043011	1	0.005	0.995	0	0	2	4.47E-06	1	1	1	NA	NA	NA	NA
1351289	1206628671	PD9774b	2	82398464	A	C	-	-	-	-	-	-	28	0	0	44	4	9.090909091	1	0	0	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.586510264	0.586510264	1	0.00375	0.99625	0	0	2	7.23E-05	1	1	1	NA	NA	NA	NA
1351289	1206628845	PD9774b	2	84616157	G	C	-	-	-	-	-	-	30	0	0	43	8	18.60465116	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.200300075	1.200300075	1	0	0.9975	0.0025	0	2	4.85E-11	1	1	1	NA	NA	NA	NA
1351289	1206628848	PD9774b	2	84678785	A	C	SUCLG1	CCDS1967.2	r.?	-	-	intronic	49	0	0	48	5	10.41666667	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.672043011	0.672043011	1	0.00375	0.99625	0	0	2	4.47E-06	1	1	1	NA	NA	NA	NA
1351289	1206628852	PD9774b	2	84771790	G	C	DNAH6	CCDS46348.1	r.?	-	-	intronic	27	0	0	59	9	15.25423729	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.984144341	0.984144341	1	0	1	0	0	2	1.96E-11	1	1	1	NA	NA	NA	NA
1351289	1206632080	PD9774b	2	92107380	T	C	-	-	-	-	-	-	36	0	0	41	4	9.756097561	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.629425649	0.629425649	1	0.0025	0.9975	0	0	2	5.46E-05	1	1	1	NA	NA	NA	NA
1351289	1206633069	PD9774b	2	95504435	G	C	-	-	-	-	-	-	46	0	0	53	5	9.433962264	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.608642727	0.608642727	1	0.00125	0.99875	0	0	2	7.34E-06	1	1	1	NA	NA	NA	NA
1351289	1206633731	PD9774b	2	97697692	A	C	-	-	-	-	-	-	46	0	0	40	4	10	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.64516129	0.64516129	1	0.00375	0.99625	0	0	2	4.95E-05	1	1	1	NA	NA	NA	NA
1351289	1206634009	PD9774b	2	99342654	A	C	MGAT4A	CCDS2036.1	r.?	-	-	intronic	24	0	0	68	6	8.823529412	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.569259962	0.569259962	1	0.00625	0.99375	0	0	2	1.31E-06	1	1	1	NA	NA	NA	NA
1351289	1206634012	PD9774b	2	99399928	T	C	-	-	-	-	-	-	32	0	0	53	8	15.09433962	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.973828363	0.973828363	1	0.00125	0.9975	0.00125	0	2	2.83E-10	1	1	1	NA	NA	NA	NA
1351289	1206634068	PD9774b	2	99993817	G	C	EIF5B	CCDS42721.1	r.?	-	-	intronic	28	0	0	60	7	11.66666667	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.752688172	0.752688172	1	0.005	0.995	0	0	2	2.39E-08	1	1	1	NA	NA	NA	NA
1351289	1206634095	PD9774b	2	100216951	T	C	AFF3	CCDS42723.1	r.?	-	-	intronic	20	0	0	42	6	14.28571429	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.921658986	0.921658986	1	0.0025	0.9975	0	0	2	7.02E-08	1	1	1	NA	NA	NA	NA
1351289	1206634169	PD9774b	2	101178999	G	C	PDCL3	CCDS33261.1	r.?	-	-	upstream	29	0	0	56	5	8.928571429	0	0	NA	0	0	NA	4	3	1	1	NA	NA	NA	unphased	0.754608295	0.754608295	1	0.00125	0.99875	0	0	2	9.65E-06	1	1	1	NA	NA	NA	NA
1351289	1206634191	PD9774b	2	101333690	G	C	-	-	-	-	-	-	27	0	0	61	5	8.196721311	0	0	NA	0	0	NA	4	3	1	1	NA	NA	NA	unphased	0.692755156	0.692755156	1	0.00375	0.99625	0	0	2	1.47E-05	1	1	1	NA	NA	NA	NA
1351289	1206634243	PD9774b	2	101864561	A	C	C2orf29	CCDS2050.1	r.?	-	-	upstream	22	0	0	60	6	10	0	0	NA	0	0	NA	4	3	1	1	NA	NA	NA	unphased	0.84516129	0.84516129	1	0	1	0	0	2	6.21E-07	1	1	1	NA	NA	NA	NA
1351289	1206634458	PD9774b	2	104831368	T	C	-	-	-	-	-	-	33	0	0	64	10	15.625	0	0	NA	0	0	NA	1.576711255	1	0	0.423288745	1	1	0.576711255	unphased	0.94192565	0.94192565	1	0	1	0	0	2	1.16E-12	1	1	1	NA	NA	NA	NA
1351289	1206634665	PD9774b	2	107300484	T	C	-	-	-	-	-	-	29	0	0	51	5	9.803921569	0	0	NA	0	0	NA	1.576711255	1	0	0.423288745	1	1	0.576711255	unphased	0.591012172	1.024797361	0.576711255	0.00125	0.99875	0	0	2	6.06E-06	1	1	1	NA	NA	NA	NA
1351289	1206634774	PD9774b	2	108942785	G	C	-	-	-	-	-	-	30	0	0	44	4	9.090909091	0	0	NA	0	0	NA	1.576711255	1	0	0.423288745	1	1	0.576711255	unphased	0.548029469	0.950266644	0.576711255	0.0025	0.9975	0	0	2	7.23E-05	1	1	1	NA	NA	NA	NA
1351289	1206634975	PD9774b	2	111688757	A	C	ACOXL	CCDS42730.1	r.?	-	-	intronic	39	0	0	45	7	15.55555556	0	0	NA	0	0	NA	1.576711255	1	0	0.423288745	1	1	0.576711255	unphased	0.937739314	0.937739314	1	0	0.99875	0.00125	0	2	3.00E-09	1	1	1	NA	NA	NA	NA
1351289	1206635579	PD9774b	2	116056543	G	C	DPP10	CCDS46400.1	r.?	-	-	intronic	26	0	0	46	11	23.91304348	0	0	NA	0	0	NA	1.576711255	1	0	0.423288745	1	1	0.576711255	unphased	1.441555777	1.441555777	1	0	0.9925	0.0075	0	2	5.55E-16	1	1	1	NA	NA	NA	NA
1351289	1206635638	PD9774b	2	116631966	G	C	-	-	-	-	-	-	45	0	0	53	7	13.20754717	0	0	NA	1	0	0	1.576711255	1	0	0.423288745	1	1	0.576711255	unphased	0.796193757	0.796193757	1	0.00125	0.99875	0	0	2	9.85E-09	1	1	1	NA	NA	NA	NA
1351289	1206635874	PD9774b	2	119805274	T	C	-	-	-	-	-	-	42	0	0	56	6	10.71428571	0	0	NA	0	0	NA	1.576711255	1	0	0.423288745	1	1	0.576711255	unphased	0.645891874	1.119957116	0.576711255	0.00125	0.99625	0.0025	0	2	4.09E-07	1	1	1	NA	NA	NA	NA
1351289	1206635959	PD9774b	2	120875260	T	C	EPB41L5	CCDS2130.1	r.?	-	-	intronic	25	0	0	62	6	9.677419355	0	0	NA	0	0	NA	1.576711255	1	0	0.423288745	1	1	0.576711255	unphased	0.583386209	1.011574169	0.576711255	0.0025	0.99625	0.00125	0	2	7.56E-07	1	1	1	NA	NA	NA	NA
1351289	1206636009	PD9774b	2	121308280	G	C	-	-	-	-	-	-	39	0	0	52	5	9.615384615	0	0	NA	0	0	NA	1.576711255	1	0	0.423288745	1	1	0.576711255	unphased	0.579646554	1.00508972	0.576711255	0.0025	0.99625	0.00125	0	2	6.68E-06	1	1	1	NA	NA	NA	NA
1351289	1206638996	PD9774b	2	134224470	G	C	NCKAP5	CCDS46418.1	r.?	-	-	intronic	30	0	0	51	8	15.68627451	0	0	NA	0	0	NA	0.854554788	0	0	0.145445212	1	0	0.854554788	unphased	0.83234003	0.974004291	0.854554788	0	1	0	0	2	2.05E-10	1	1	1	NA	NA	NA	NA
1351289	1206639141	PD9774b	2	136153463	G	C	ZRANB3	CCDS46419.1	r.?	-	-	intronic	34	0	0	59	10	16.94915254	0	0	NA	0	0	NA	0.854554788	0	0	0.145445212	1	0	0.854554788	unphased	0.899350456	1.05241989	0.854554788	0.00125	0.9975	0.00125	0	2	4.91E-13	1	1	1	NA	NA	NA	NA
1351289	1206639775	PD9774b	2	144317180	A	C	ARHGAP15	CCDS2184.1	r.?	-	-	intronic	46	0	0	43	7	16.27906977	2	0	0	0	0	NA	0.854554788	0	0	0.145445212	1	0	0.854554788	unphased	0.86379474	1.010812592	0.854554788	0	0.99875	0.00125	0	2	2.15E-09	1	1	1	NA	NA	NA	NA
1351289	1206640145	PD9774b	2	150194926	G	C	LYPD6	CCDS2188.1	r.?	-	-	intronic	27	0	0	51	7	13.7254902	0	0	NA	0	0	NA	0.854554788	0	0	0.145445212	1	0	0.854554788	unphased	0.728297526	0.852253754	0.854554788	0.00125	0.9975	0.00125	0	2	7.46E-09	1	1	1	NA	NA	NA	NA
1351289	1206640147	PD9774b	2	150237954	T	C	LYPD6	CCDS2188.1	r.?	-	-	intronic	36	0	0	40	7	17.5	0	0	NA	0	0	NA	0.854554788	0	0	0.145445212	1	0	0.854554788	unphased	0.928579346	0.928579346	1	0.00375	0.99625	0	0	2	1.26E-09	1	1	1	NA	NA	NA	NA
1351289	1206640211	PD9774b	2	150968864	A	C	-	-	-	-	-	-	38	0	0	53	8	15.09433962	0	0	NA	0	0	NA	0.854554788	0	0	0.145445212	1	0	0.854554788	unphased	0.800930972	0.937249412	0.854554788	0.00125	0.99875	0	0	2	2.83E-10	1	1	1	NA	NA	NA	NA
1351289	1206640285	PD9774b	2	152026213	G	C	-	-	-	-	-	-	24	0	0	40	5	12.5	0	0	NA	0	0	NA	0.854554788	0	0	0.145445212	1	0	0.854554788	unphased	0.663270961	0.776159669	0.854554788	0.0025	0.9975	0	0	2	1.78E-06	1	1	1	NA	NA	NA	NA
1351289	1206640503	PD9774b	2	154864682	A	C	GALNT13	CCDS2199.1	r.?	-	-	intronic	29	0	0	44	9	20.45454545	0	0	NA	0	0	NA	0.854554788	0	0	0.145445212	1	0	0.854554788	unphased	1.085352482	1.085352482	1	0	1	0	0	2	1.18E-12	1	1	1	NA	NA	NA	NA
1351289	1206640571	PD9774b	2	155800673	T	C	-	-	-	-	-	-	32	0	0	53	6	11.32075472	0	0	NA	0	0	NA	0.854554788	0	0	0.145445212	1	0	0.854554788	unphased	0.600698229	0.702937059	0.854554788	0.005	0.995	0	0	2	2.93E-07	1	1	1	NA	NA	NA	NA
1351289	1206640774	PD9774b	2	159508057	G	C	PKP4	CCDS33306.1	r.?	-	-	intronic	28	0	0	35	6	17.14285714	246	0	0	74	5	6.756756757	0.854554788	0	0	0.145445212	1	0	0.854554788	unphased	0.909628747	1.064447546	0.854554788	0.00125	0.995	0.00375	0	2	2.24E-08	1	3.78E-05	1	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206641575	PD9774b	2	170185436	G	C	LRP2	CCDS2232.1	r.?	-	-	intronic	38	0	0	56	8	14.28571429	0	0	NA	0	0	NA	0.854554788	0	0	0.145445212	1	0	0.854554788	unphased	0.758023956	0.887039622	0.854554788	0	1	0	0	2	4.48E-10	1	1	1	NA	NA	NA	NA
1351289	1206641618	PD9774b	2	170520433	T	C	C2orf77	CCDS46445.1	r.?	-	-	intronic	30	0	0	51	6	11.76470588	0	0	NA	0	0	NA	0.854554788	0	0	0.145445212	1	0	0.854554788	unphased	0.624255022	0.730503218	0.854554788	0	1	0	0	2	2.32E-07	1	1	1	NA	NA	NA	NA
1351289	1206641892	PD9774b	2	173143649	G	C	-	-	-	-	-	-	28	0	0	45	6	13.33333333	0	0	NA	0	0	NA	1.770709529	1	0	0.229290471	2	0	0.770709529	unphased	0.829642991	1.076466502	0.770709529	0.00375	0.99625	0	0	2	1.08E-07	1	1	1	NA	NA	NA	NA
1351289	1206641910	PD9774b	2	173265363	G	C	-	-	-	-	-	-	23	0	0	63	27	42.85714286	0	0	NA	0	0	NA	1.770709529	1	0	0.229290471	2	0	0.770709529	unphased	2.666709614	1.506011895	1.770709529	0	0.9425	0.0575	0	2	3.06E-45	1	1	1	NA	NA	NA	NA
1351289	1206642346	PD9774b	2	178618109	A	C	PDE11A	CCDS42786.1	r.?	-	-	intronic	33	0	0	55	4	7.272727273	0	0	NA	1	0	0	1.770709529	1	0	0.229290471	2	0	0.770709529	unphased	0.452532541	0.587163547	0.770709529	0.00125	0.9975	0.00125	0	2	0.000173903	1	1	1	NA	NA	NA	NA
1351289	1206642441	PD9774b	2	179961794	G	C	SESTD1	CCDS33338.1	r.?	-	-	downstream	25	0	0	52	17	32.69230769	0	0	NA	0	0	NA	1.770709529	1	0	0.229290471	2	0	0.770709529	unphased	2.034220795	1.148816766	1.770709529	0.00125	0.9975	0.00125	0	2	1.42E-26	1	1	1	NA	NA	NA	NA
1351289	1206642561	PD9774b	2	181455809	T	C	-	-	-	-	-	-	30	0	0	37	6	16.21621622	0	0	NA	0	0	NA	1.770709529	1	0	0.229290471	2	0	0.770709529	unphased	1.009025259	1.009025259	1	0	1	0	0	2	3.18E-08	1	1	1	NA	NA	NA	NA
1351289	1206643023	PD9774b	2	186918221	A	C	-	-	-	-	-	-	42	0	0	61	5	8.196721311	0	0	NA	0	0	NA	1.770709529	1	0	0.229290471	2	0	0.770709529	unphased	0.510026429	0.661762194	0.770709529	0.00125	0.9975	0.00125	0	2	1.47E-05	1	1	1	NA	NA	NA	NA
1351289	1206643079	PD9774b	2	187627581	G	C	FAM171B	CCDS33347.1	r.2715g>c	c.?	p.?	3'UTR variant	31	0	0	53	4	7.547169811	0	0	NA	0	0	NA	1.770709529	1	0	0.229290471	2	0	0.770709529	unphased	0.46960924	0.609320662	0.770709529	0.0025	0.99625	0.00125	0	2	0.000150502	1	1	1	NA	NA	NA	NA
1351289	1206643233	PD9774b	2	189736370	G	C	-	-	-	-	-	-	49	0	0	72	6	8.333333333	0	0	NA	0	0	NA	1.770709529	1	0	0.229290471	2	0	0.770709529	unphased	0.518526869	0.672791564	0.770709529	0.00625	0.99375	0	0	2	1.84E-06	1	1	1	NA	NA	NA	NA
1351289	1206643604	PD9774b	2	193785900	A	C	-	-	-	-	-	-	36	0	0	58	4	6.896551724	0	0	NA	0	0	NA	1.770709529	1	0	0.229290471	2	0	0.770709529	unphased	0.429125685	0.556793018	0.770709529	0.00375	0.99625	0	0	2	0.000213772	1	1	1	NA	NA	NA	NA
1351289	1206643846	PD9774b	2	196747719	G	C	DNAH7	CCDS42794.1	r.?	-	-	intronic	37	0	0	56	5	8.928571429	0	0	NA	0	0	NA	1.770709529	1	0	0.229290471	2	0	0.770709529	unphased	0.555564503	0.720848104	0.770709529	0.00125	0.99875	0	0	2	9.65E-06	1	1	1	NA	NA	NA	NA
1351289	1206644085	PD9774b	2	199015675	T	C	PLCL1	CCDS2326.1	r.?	-	-	downstream	27	0	0	54	15	27.77777778	0	0	NA	0	0	NA	1.770709529	1	0	0.229290471	2	0	0.770709529	unphased	1.728422898	0.976118821	1.770709529	0.00125	0.99875	0	0	2	2.20E-22	1	1	1	NA	NA	NA	NA
1351289	1206644115	PD9774b	2	199357124	T	C	-	-	-	-	-	-	38	0	0	55	5	9.090909091	0	0	NA	0	0	NA	1.770709529	1	0	0.229290471	2	0	0.770709529	unphased	0.565665676	0.733954433	0.770709529	0.00125	0.99875	0	0	2	8.83E-06	1	1	1	NA	NA	NA	NA
1351289	1206644200	PD9774b	2	200382701	T	C	-	-	-	-	-	-	34	0	0	58	8	13.79310345	0	0	NA	0	0	NA	1.770709529	1	0	0.229290471	2	0	0.770709529	unphased	0.85825137	1.113586037	0.770709529	0.00125	0.99875	0	0	2	5.99E-10	1	1	1	NA	NA	NA	NA
1351289	1206644637	PD9774b	2	204860382	T	C	-	-	-	-	-	-	26	0	0	53	13	24.52830189	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.337188071	1.337188071	1	0	0.9975	0.0025	0	2	8.53E-19	1	1	1	NA	NA	NA	NA
1351289	1206644651	PD9774b	2	205186314	A	C	-	-	-	-	-	-	29	0	0	37	8	21.62162162	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.178727114	1.178727114	1	0	1	0	0	2	1.33E-11	1	1	1	NA	NA	NA	NA
1351289	1206644846	PD9774b	2	207975578	G	C	KLF7	CCDS2373.1	r.?	-	-	intronic	31	0	0	46	4	8.695652174	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.474053296	0.474053296	1	0.0075	0.9925	0	0	2	8.62E-05	1	1	1	NA	NA	NA	NA
1351289	1206644937	PD9774b	2	209080061	A	C	-	-	-	-	-	-	24	0	0	43	10	23.25581395	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.267816954	1.267816954	1	0	1	0	0	2	1.61E-14	1	1	1	NA	NA	NA	NA
1351289	1206644976	PD9774b	2	209500160	A	C	-	-	-	-	-	-	39	0	0	69	5	7.246376812	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.395044413	0.395044413	1	0.045	0.955	0	0	2	2.69E-05	1	1	1	NA	NA	NA	NA
1351289	1206644989	PD9774b	2	209781814	A	C	-	-	-	-	-	-	31	0	0	45	7	15.55555556	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.848028674	0.848028674	1	0.00125	0.99875	0	0	2	3.00E-09	1	1	1	NA	NA	NA	NA
1351289	1206645020	PD9774b	2	210135908	T	C	-	-	-	-	-	-	46	0	0	63	17	26.98412698	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.471070148	1.471070148	1	0	0.9875	0.0125	0	2	6.22E-25	1	1	1	NA	NA	NA	NA
1351289	1206645415	PD9774b	2	215043046	T	C	SPAG16	CCDS2396.1	r.?	-	-	intronic	36	0	0	41	6	14.63414634	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.79779701	0.79779701	1	0.00125	0.99875	0	0	2	6.05E-08	1	1	1	NA	NA	NA	NA
1351289	1206646754	PD9774b	2	230318299	T	C	DNER	CCDS33390.1	r.?	-	-	intronic	36	0	0	56	9	16.07142857	0	0	NA	0	0	NA	1.658749733	1	0	0.341250267	2	0	0.658749733	unphased	0.982022566	0.982022566	1	0	1	0	0	2	1.20E-11	1	1	1	NA	NA	NA	NA
1351289	1206647192	PD9774b	2	234822194	A	C	TRPM8	CCDS33407.1	r.?	-	-	upstream	31	0	0	65	5	7.692307692	0	0	NA	0	0	NA	1.658749733	1	0	0.341250267	2	0	0.658749733	unphased	0.470027895	0.713515121	0.658749733	0.00375	0.995	0.00125	0	2	2.01E-05	1	1	1	NA	NA	NA	NA
1351289	1206647466	PD9774b	2	238291041	A	C	COL6A3	CCDS33412.1	r.?	-	-	intronic	37	0	0	55	10	18.18181818	0	0	NA	0	0	NA	1.658749733	1	0	0.341250267	2	0	0.658749733	unphased	1.110975025	1.110975025	1	0	1	0	0	2	2.33E-13	1	1	1	NA	NA	NA	NA
1351289	1206647676	PD9774b	2	240579494	T	C	-	-	-	-	-	-	39	0	0	42	5	11.9047619	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.649001536	0.649001536	1	0.00375	0.99625	0	0	2	2.28E-06	1	1	1	NA	NA	NA	NA
1351289	1206647833	PD9774b	2	242201035	T	C	HDLBP	CCDS2547.1	r.?	-	-	intronic	24	0	0	55	6	10.90909091	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.594721408	0.594721408	1	0.00875	0.99125	0	0	2	3.67E-07	1	1	1	NA	NA	NA	NA
1351289	1206648391	PD9774b	20	4180824	A	C	-	-	-	-	-	-	42	0	0	62	9	14.51612903	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.936524454	0.936524454	1	0.00125	0.99875	0	0	2	3.12E-11	1	1	1	NA	NA	NA	NA
1351289	1206648442	PD9774b	20	4820604	G	C	-	-	-	-	-	-	43	0	0	46	7	15.2173913	1	0	0	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.981767181	0.981767181	1	0.00125	0.99875	0	0	2	3.53E-09	1	1	1	NA	NA	NA	NA
1351289	1206648592	PD9774b	20	6349133	T	C	-	-	-	-	-	-	42	0	0	63	9	14.28571429	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.921658986	0.921658986	1	0.0025	0.995	0.0025	0	2	3.62E-11	1	1	1	NA	NA	NA	NA
1351289	1206648608	PD9774b	20	6599629	T	C	-	-	-	-	-	-	32	0	0	48	7	14.58333333	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.940860215	0.940860215	1	0.00375	0.995	0.00125	0	2	4.81E-09	1	1	1	NA	NA	NA	NA
1351289	1206648616	PD9774b	20	6680408	A	C	-	-	-	-	-	-	36	0	0	63	10	15.87301587	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.02406554	1.02406554	1	0	0.9975	0.0025	0	2	9.81E-13	1	1	1	NA	NA	NA	NA
1351289	1206648768	PD9774b	20	8636483	G	C	PLCB1	CCDS13103.1	r.?	-	-	intronic	38	0	0	55	9	16.36363636	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.055718475	1.055718475	1	0	1	0	0	2	1.01E-11	1	1	1	NA	NA	NA	NA
1351289	1206648786	PD9774b	20	8821652	T	C	PLCB1	CCDS13103.1	r.?	-	-	intronic	39	0	0	52	8	15.38461538	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.992555831	0.992555831	1	0.0025	0.9975	0	0	2	2.42E-10	1	1	1	NA	NA	NA	NA
1351289	1206648921	PD9774b	20	10342351	T	C	-	-	-	-	-	-	32	0	0	57	11	19.29824561	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.245048104	1.245048104	1	0	0.99625	0.00375	0	2	7.29E-15	1	1	1	NA	NA	NA	NA
1351289	1206648964	PD9774b	20	10951962	G	C	-	-	-	-	-	-	34	0	0	55	4	7.272727273	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.469208211	0.469208211	1	0.01	0.99	0	0	2	0.000173903	1	1	1	NA	NA	NA	NA
1351289	1206649116	PD9774b	20	12827975	G	C	-	-	-	-	-	-	32	0	0	69	4	5.797101449	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.374006545	0.374006545	1	0.02	0.98	0	0	2	0.000416985	1	1	1	NA	NA	NA	NA
1351289	1206649134	PD9774b	20	13153200	G	C	-	-	-	-	-	-	42	0	0	67	11	16.41791045	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.059220029	1.059220029	1	0	1	0	0	2	4.85E-14	1	1	1	NA	NA	NA	NA
1351289	1206649227	PD9774b	20	14290481	G	C	MACROD2	CCDS13120.2	r.?	-	-	intronic	38	0	0	54	8	14.81481481	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.955794504	0.955794504	1	0	1	0	0	2	3.31E-10	1	1	1	NA	NA	NA	NA
1351289	1206649293	PD9774b	20	15097542	T	C	MACROD2	CCDS13120.2	r.?	-	-	intronic	40	0	0	49	5	10.20408163	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.658327847	0.658327847	1	0.00625	0.99375	0	0	2	4.96E-06	1	1	1	NA	NA	NA	NA
1351289	1206649336	PD9774b	20	15708894	G	C	MACROD2	CCDS13120.2	r.?	-	-	intronic	49	0	0	58	7	12.06896552	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.778642937	0.778642937	1	0.005	0.995	0	0	2	1.88E-08	1	1	1	NA	NA	NA	NA
1351289	1206649395	PD9774b	20	16321594	G	C	KIF16B	CCDS13122.1	r.?	-	-	intronic	28	0	0	48	17	35.41666667	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	2.284946237	2.284946237	1	0	0.5675	0.43125	0.00125	2	2.80E-27	1	1	1	NA	NA	NA	NA
1351289	1206649460	PD9774b	20	17380072	T	C	PCSK2	CCDS13125.1	r.?	-	-	intronic	49	0	0	73	5	6.849315068	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.441891295	0.441891295	1	0.015	0.985	0	0	2	3.54E-05	1	1	1	NA	NA	NA	NA
1351289	1206649782	PD9774b	20	20951898	G	C	-	-	-	-	-	-	39	0	0	52	4	7.692307692	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.496277916	0.496277916	1	0.01	0.98875	0.00125	0	2	0.000139698	1	1	1	NA	NA	NA	NA
1351289	1206649902	PD9774b	20	23072576	G	C	-	-	-	-	-	-	39	0	0	53	7	13.20754717	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.852099817	0.852099817	1	0.0025	0.9975	0	0	2	9.85E-09	1	1	1	NA	NA	NA	NA
1351289	1206649911	PD9774b	20	23190854	G	C	-	-	-	-	-	-	36	0	0	65	4	6.153846154	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.397022333	0.397022333	1	0.0225	0.9775	0	0	2	0.000331785	1	1	1	NA	NA	NA	NA
1351289	1206649935	PD9774b	20	23497114	A	C	-	-	-	-	-	-	38	0	0	61	6	9.836065574	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.634584876	0.634584876	1	0.0025	0.9975	0	0	2	6.85E-07	1	1	1	NA	NA	NA	NA
1351289	1206650049	PD9774b	20	24634966	G	C	TMEM90B	CCDS13164.1	r.?	-	-	intronic	30	0	0	51	6	11.76470588	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.759013283	0.759013283	1	0.0025	0.9975	0	0	2	2.32E-07	1	1	1	NA	NA	NA	NA
1351289	1206655544	PD9774b	20	33802471	G	C	-	-	-	-	-	-	22	0	0	40	6	15	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.967741935	0.967741935	1	0.00125	0.99875	0	0	2	5.18E-08	1	1	1	NA	NA	NA	NA
1351289	1206655621	PD9774b	20	34453801	G	C	PHF20	CCDS13268.1	r.?	-	-	intronic	33	0	0	56	4	7.142857143	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.460829493	0.460829493	1	0.01	0.99	0	0	2	0.000186538	1	1	1	NA	NA	NA	NA
1351289	1206655934	PD9774b	20	38915914	G	C	-	-	-	-	-	-	38	0	0	34	7	20.58823529	0	0	NA	0	0	NA	0.790269495	0	0	0.209730505	1	0	0.790269495	unphased	1.079211082	1.079211082	1	0.00125	0.99625	0.0025	0	2	3.73E-10	1	1	1	NA	NA	NA	NA
1351289	1206656008	PD9774b	20	40502949	G	C	-	-	-	-	-	-	37	0	0	51	7	13.7254902	0	0	NA	0	0	NA	0.790269495	0	0	0.209730505	1	0	0.790269495	unphased	0.719474055	0.910416079	0.790269495	0	1	0	0	2	7.46E-09	1	1	1	NA	NA	NA	NA
1351289	1206656656	PD9774b	20	47827057	T	C	-	-	-	-	-	-	34	0	0	57	7	12.28070175	0	0	NA	0	0	NA	1.580507337	1	0	0.419492663	1	1	0.580507337	unphased	0.740786696	0.740786696	1	0.00125	0.99875	0	0	2	1.66E-08	1	1	1	NA	NA	NA	NA
1351289	1206657164	PD9774b	20	53425358	G	C	-	-	-	-	-	-	33	0	0	64	5	7.8125	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.504032258	0.504032258	1	0.01125	0.98875	0	0	2	1.86E-05	1	1	1	NA	NA	NA	NA
1351289	1206657190	PD9774b	20	53673313	A	C	-	-	-	-	-	-	36	0	0	51	8	15.68627451	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.01201771	1.01201771	1	0	0.99875	0.00125	0	2	2.05E-10	1	1	1	NA	NA	NA	NA
1351289	1206657625	PD9774b	20	59686205	G	C	-	-	-	-	-	-	32	0	0	49	5	10.20408163	0	0	NA	0	0	NA	1.438482126	1	0	0.561517874	1	1	0.438482126	unphased	0.601030105	1.370706056	0.438482126	0	0.99375	0.00625	0	2	4.96E-06	1	1	1	NA	NA	NA	NA
1351289	1206657661	PD9774b	20	60045819	T	C	CDH4	CCDS13488.1	r.?	-	-	intronic	23	0	0	59	5	8.474576271	0	0	NA	0	0	NA	1.438482126	1	0	0.561517874	1	1	0.438482126	unphased	0.499160596	1.138382996	0.438482126	0.00125	0.9975	0.00125	0	2	1.25E-05	1	1	1	NA	NA	NA	NA
1351289	1206661472	PD9774b	21	9836366	A	C	-	-	-	-	-	-	175	0	0	259	12	4.633204633	0	0	NA	0	0	NA	1.902569604	0	0	-0.902569604	1	0	1.902569604	unphased	0.294402278	0.294402278	1	0.78	0.22	0	0	1	1.15E-08	1	1	1	NA	NA	NA	NA
1351289	1206672055	PD9774b	21	14564337	T	C	-	-	-	-	-	-	23	0	0	46	4	8.695652174	0	0	NA	0	0	NA	2.499191854	1	1	0.500808146	2	1	0.499191854	unphased	0.604417805	1.210792605	0.499191854	0	1	0	0	2	8.62E-05	1	1	1	NA	NA	NA	NA
1351289	1206672080	PD9774b	21	14712464	T	C	-	-	-	-	-	-	37	0	0	42	6	14.28571429	0	0	NA	0	0	NA	2.499191854	1	1	0.500808146	2	1	0.499191854	unphased	0.992972108	0.992972108	1	0	0.99875	0.00125	0	2	7.02E-08	1	1	1	NA	NA	NA	NA
1351289	1206672935	PD9774b	21	19891250	T	C	-	-	-	-	-	-	29	0	0	51	9	17.64705882	0	0	NA	0	0	NA	2.499191854	1	1	0.500808146	2	1	0.499191854	unphased	1.226612604	1.226612604	1	0	0.9975	0.0025	0	2	4.92E-12	1	1	1	NA	NA	NA	NA
1351289	1206672946	PD9774b	21	19992852	G	C	-	-	-	-	-	-	32	0	0	68	10	14.70588235	0	0	NA	0	0	NA	2.499191854	1	1	0.500808146	2	1	0.499191854	unphased	1.02217717	1.02217717	1	0.00125	0.99875	0	0	2	2.18E-12	1	1	1	NA	NA	NA	NA
1351289	1206673022	PD9774b	21	20963252	T	C	-	-	-	-	-	-	35	0	0	59	8	13.55932203	0	0	NA	0	0	NA	2.499191854	1	1	0.500808146	2	1	0.499191854	unphased	0.942482001	0.942482001	1	0	1	0	0	2	6.90E-10	1	1	1	NA	NA	NA	NA
1351289	1206673038	PD9774b	21	21152448	T	C	-	-	-	-	-	-	34	0	0	66	7	10.60606061	0	0	NA	0	0	NA	2.499191854	1	1	0.500808146	2	1	0.499191854	unphased	0.737206565	0.737206565	1	0.00125	0.99875	0	0	2	4.70E-08	1	1	1	NA	NA	NA	NA
1351289	1206673053	PD9774b	21	21269702	G	C	-	-	-	-	-	-	29	0	0	60	9	15	0	0	NA	0	0	NA	2.499191854	1	1	0.500808146	2	1	0.499191854	unphased	1.042620714	1.042620714	1	0.00125	0.99875	0	0	2	2.29E-11	1	1	1	NA	NA	NA	NA
1351289	1206673138	PD9774b	21	22155310	G	C	-	-	-	-	-	-	36	0	0	53	5	9.433962264	0	0	NA	0	0	NA	2.499191854	1	1	0.500808146	2	1	0.499191854	unphased	0.655736298	1.31359575	0.499191854	0.00125	0.99125	0.0075	0	2	7.34E-06	1	1	1	NA	NA	NA	NA
1351289	1206673331	PD9774b	21	23755269	A	C	-	-	-	-	-	-	31	0	0	69	5	7.246376812	0	0	NA	0	0	NA	2.499191854	1	1	0.500808146	2	1	0.499191854	unphased	0.503681504	1.008993837	0.499191854	0	1	0	0	2	2.69E-05	1	1	1	NA	NA	NA	NA
1351289	1206673525	PD9774b	21	25453997	G	C	-	-	-	-	-	-	38	0	0	58	13	22.4137931	0	0	NA	0	0	NA	2.499191854	1	1	0.500808146	2	1	0.499191854	unphased	1.557938997	1.557938997	1	0	0.99	0.01	0	2	3.12E-18	1	1	1	NA	NA	NA	NA
1351289	1206673758	PD9774b	21	28294536	T	C	ADAMTS5	CCDS13579.1	r.4751a>g	c.?	p.?	3'UTR variant	41	0	0	46	6	13.04347826	0	0	NA	0	0	NA	1.797718639	1	0	0.202281361	1	1	0.797718639	unphased	0.815130201	1.021826696	0.797718639	0.0025	0.995	0.0025	0	2	1.23E-07	1	1	1	NA	NA	NA	NA
1351289	1206673792	PD9774b	21	28671997	T	C	-	-	-	-	-	-	33	0	0	45	7	15.55555556	0	0	NA	0	0	NA	1.797718639	1	0	0.202281361	1	1	0.797718639	unphased	0.97211824	0.97211824	1	0	1	0	0	2	3.00E-09	1	1	1	NA	NA	NA	NA
1351289	1206674132	PD9774b	21	32483677	G	C	TIAM1	ENST00000461148	r.?	-	-	intronic	42	0	0	39	7	17.94871795	0	0	NA	0	0	NA	1.797718639	1	0	0.202281361	1	1	0.797718639	unphased	1.121674892	1.121674892	1	0	1	0	0	2	1.04E-09	1	1	1	NA	NA	NA	NA
1351289	1206674157	PD9774b	21	32712971	T	C	TIAM1	CCDS13609.1	r.?	-	-	intronic	25	0	0	55	8	14.54545455	0	0	NA	0	0	NA	1.797718639	1	0	0.202281361	1	1	0.797718639	unphased	0.908993679	0.908993679	1	0	1	0	0	2	3.86E-10	1	1	1	NA	NA	NA	NA
1351289	1206674359	PD9774b	21	33893878	G	C	-	-	-	-	-	-	48	0	0	49	8	16.32653061	0	0	NA	0	0	NA	1.797718639	1	0	0.202281361	1	1	0.797718639	unphased	1.020299027	1.020299027	1	0	1	0	0	2	1.47E-10	1	1	1	NA	NA	NA	NA
1351289	1206674491	PD9774b	21	35159067	A	C	ITSN1	CCDS33545.1	r.?	-	-	intronic	29	0	0	55	8	14.54545455	0	0	NA	0	0	NA	1.797718639	1	0	0.202281361	1	1	0.797718639	unphased	0.908993679	0.908993679	1	0.00125	0.99875	0	0	2	3.86E-10	1	1	1	NA	NA	NA	NA
1351289	1206674541	PD9774b	21	35518849	T	C	MRPS6	CCDS33548.1	r.?	-	-	downstream	37	0	0	60	10	16.66666667	0	0	NA	0	0	NA	1.797718639	1	0	0.202281361	1	1	0.797718639	unphased	1.041555257	1.041555257	1	0.00125	0.99875	0	0	2	5.86E-13	1	1	1	NA	NA	NA	NA
1351289	1206674626	PD9774b	21	36728533	A	C	-	-	-	-	-	-	42	0	0	61	6	9.836065574	0	0	NA	0	0	NA	2.608470272	1	1	0.391529728	2	1	0.608470272	unphased	0.694434411	1.14127911	0.608470272	0.00125	0.9975	0.00125	0	2	6.85E-07	1	1	1	NA	NA	NA	NA
1351289	1206674725	PD9774b	21	37788223	G	C	CHAF1B	CCDS13644.1	r.?	-	-	intronic	23	0	0	35	5	14.28571429	0	0	NA	0	0	NA	2.608470272	1	1	0.391529728	2	1	0.608470272	unphased	1.008583311	1.008583311	1	0	1	0	0	2	8.95E-07	1	1	1	NA	NA	NA	NA
1351289	1206675092	PD9774b	21	41504240	A	C	DSCAM	CCDS42929.1	r.?	-	-	intronic	22	0	0	58	8	13.79310345	0	0	NA	0	0	NA	2.608470272	1	1	0.391529728	2	1	0.608470272	unphased	0.973804576	0.973804576	1	0.00125	0.9975	0.00125	0	2	5.99E-10	1	1	1	NA	NA	NA	NA
1351289	1206675205	PD9774b	21	42445539	G	C	-	-	-	-	-	-	37	0	0	58	8	13.79310345	0	0	NA	0	0	NA	0.13073868	0	0	0.86926132	1	0	0.13073868	unphased	0.632048494	0.632048494	1	0.01125	0.98875	0	0	2	5.99E-10	1	1	1	NA	NA	NA	NA
1351289	1206675218	PD9774b	21	42776652	G	C	MX2	CCDS13672.1	r.?	-	-	intronic	22	0	0	47	7	14.89361702	0	0	NA	0	0	NA	0.13073868	0	0	0.86926132	1	0	0.13073868	unphased	0.682477895	0.682477895	1	0.00625	0.99375	0	0	2	4.12E-09	1	1	1	NA	NA	NA	NA
1351289	1206675365	PD9774b	21	44396847	T	C	PKNOX1	CCDS13692.1	r.?	-	-	intronic	41	0	0	50	11	22	0	0	NA	0	0	NA	0.13073868	0	0	0.86926132	1	0	0.13073868	unphased	1.008117348	1.008117348	1	0.00125	0.99875	0	0	2	1.52E-15	1	1	1	NA	NA	NA	NA
1351289	1206677485	PD9774b	22	19126031	A	C	DGCR14	CCDS13756.1	r.?	-	-	intronic	28	0	0	49	11	22.44897959	0	0	NA	0	0	NA	0.677534538	0	0	0.322465462	1	0	0.677534538	unphased	1.151441262	1.151441262	1	0	0.9975	0.0025	0	2	1.19E-15	1	1	1	NA	NA	NA	NA
1351289	1206678148	PD9774b	22	24355905	G	C	GSTT1	ENST00000448934	r.?	-	-	intronic	23	0	0	37	3	8.108108108	0	0	NA	0	0	NA	0.677534538	0	0	0.322465462	1	0	0.677534538	unphased	0.41587682	0.613809033	0.677534538	0.0025	0.9975	0	0	2	0.000855237	1	1	1	NA	NA	NA	NA
1351289	1206678436	PD9774b	22	26638759	G	C	SEZ6L	CCDS13833.1	r.?	-	-	intronic	37	0	0	38	6	15.78947368	0	0	NA	0	0	NA	0.677534538	0	0	0.322465462	1	0	0.677534538	unphased	0.809865386	0.809865386	1	0	1	0	0	2	3.76E-08	1	1	1	NA	NA	NA	NA
1351289	1206678520	PD9774b	22	27575269	G	C	-	-	-	-	-	-	29	0	0	48	5	10.41666667	0	0	NA	0	0	NA	0.677534538	0	0	0.322465462	1	0	0.677534538	unphased	0.534286192	0.788574104	0.677534538	0.00375	0.99625	0	0	2	4.47E-06	1	1	1	NA	NA	NA	NA
1351289	1206678594	PD9774b	22	28721806	A	C	TTC28	CCDS46678.1	r.?	-	-	intronic	39	0	0	47	6	12.76595745	0	0	NA	0	0	NA	0.677534538	0	0	0.322465462	1	0	0.677534538	unphased	0.65478478	0.966422732	0.677534538	0	1	0	0	2	1.41E-07	1	1	1	NA	NA	NA	NA
1351289	1206678732	PD9774b	22	29957854	G	C	NIPSNAP1	CCDS13860.1	r.623-3c>g	c.368-3C>G	p.?	splice region	40	0	0	43	7	16.27906977	177	0	0	61	6	9.836065574	2	1	1	1	NA	NA	NA	unphased	1.050262566	1.050262566	1	0.00125	0.99625	0.0025	0	2	2.15E-09	1	6.85E-07	1	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206678753	PD9774b	22	30163350	G	C	UQCR10	CCDS46680.1	r.?	-	-	upstream	29	0	0	58	5	8.620689655	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.556173526	0.556173526	1	0.005	0.995	0	0	2	1.15E-05	1	1	1	NA	NA	NA	NA
1351289	1206678782	PD9774b	22	30474314	G	C	HORMAD2	CCDS46683.1	r.?	-	-	upstream	31	0	0	52	4	7.692307692	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.496277916	0.496277916	1	0.0125	0.9875	0	0	2	0.000139698	1	1	1	NA	NA	NA	NA
1351289	1206679228	PD9774b	22	35750806	A	C	-	-	-	-	-	-	31	0	0	40	9	22.5	0	0	NA	0	0	NA	0.736598606	0	0	0.263401394	1	0	0.736598606	unphased	1.16734759	1.16734759	1	0	0.99625	0.00375	0	2	4.64E-13	1	1	1	NA	NA	NA	NA
1351289	1206679397	PD9774b	22	37564202	A	C	IL2RB	ENST00000453962	r.?	-	-	intronic	35	0	0	54	10	18.51851852	0	0	NA	0	0	NA	0.736598606	0	0	0.263401394	1	0	0.736598606	unphased	0.960779909	0.960779909	1	0.00125	0.99875	0	0	2	1.91E-13	1	1	1	NA	NA	NA	NA
1351289	1206679417	PD9774b	22	37818985	G	C	ELFN2	CCDS33642.1	r.?	-	-	intronic	20	0	0	30	4	13.33333333	0	0	NA	0	0	NA	0.736598606	0	0	0.263401394	1	0	0.736598606	unphased	0.691761535	0.939129573	0.736598606	0.00125	0.99875	0	0	2	1.54E-05	1	1	1	NA	NA	NA	NA
1351289	1206679465	PD9774b	22	38222983	G	C	MIR658	CCDS13959.1	r.?	-	-	downstream	38	0	0	41	7	17.07317073	0	0	NA	2	0	0	0.736598606	0	0	0.263401394	1	0	0.736598606	unphased	0.885792209	0.885792209	1	0.00125	0.99875	0	0	2	1.51E-09	1	1	1	NA	NA	NA	NA
1351289	1206679699	PD9774b	22	40617672	G	C	TNRC6B	CCDS46713.1	r.?	-	-	intronic	39	0	0	42	12	28.57142857	0	0	NA	0	0	NA	0.736598606	0	0	0.263401394	1	0	0.736598606	unphased	1.482346146	1.482346146	1	0	0.9875	0.0125	0	2	2.35E-18	1	1	1	NA	NA	NA	NA
1351289	1206679739	PD9774b	22	41112909	A	C	Z98048.1	ENST00000499213	r.?	-	-	intronic	34	0	0	49	10	20.40816327	0	0	NA	0	0	NA	0.736598606	0	0	0.263401394	1	0	0.736598606	unphased	1.058818675	1.058818675	1	0.00125	0.99625	0.0025	0	2	6.72E-14	1	1	1	NA	NA	NA	NA
1351289	1206681291	PD9774b	3	4929298	G	C	ENSG00000235978	ENST00000449914	r.?	-	-	upstream	34	0	0	44	4	9.090909091	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	0.48108467	0.572502792	0.840318471	0.0075	0.9925	0	0	2	7.23E-05	1	1	1	NA	NA	NA	NA
1351289	1206681314	PD9774b	3	5137222	T	C	-	-	-	-	-	-	30	0	0	44	7	15.90909091	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	0.841898173	1.001879885	0.840318471	0	1	0	0	2	2.55E-09	1	1	1	NA	NA	NA	NA
1351289	1206681673	PD9774b	3	9741959	G	C	MTMR14	CCDS43043.1	r.?	-	-	intronic	38	0	0	53	4	7.547169811	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	0.399391047	0.475285336	0.840318471	0.00875	0.99125	0	0	2	0.000150502	1	1	1	NA	NA	NA	NA
1351289	1206681674	PD9774b	3	9743917	T	C	MTMR14	CCDS43043.1	r.2335u>c	c.?	p.?	3'UTR variant	23	0	0	44	4	9.090909091	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	0.48108467	0.572502792	0.840318471	0.00625	0.99375	0	0	2	7.23E-05	1	1	1	NA	NA	NA	NA
1351289	1206681989	PD9774b	3	13534594	G	C	HDAC11	CCDS2615.1	r.?	-	-	intronic	31	0	0	44	4	9.090909091	0	0	NA	1	0	0	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	0.48108467	0.572502792	0.840318471	0.00375	0.995	0.00125	0	2	7.23E-05	1	1	1	NA	NA	NA	NA
1351289	1206682032	PD9774b	3	14150479	G	C	CHCHD4	CCDS2617.1	r.?	-	-	downstream	33	0	0	46	8	17.39130435	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	0.920335891	0.920335891	1	0	0.99875	0.00125	0	2	8.61E-11	1	1	1	NA	NA	NA	NA
1351289	1206682975	PD9774b	3	27710456	G	C	-	-	-	-	-	-	23	0	0	55	5	9.090909091	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	0.48108467	0.572502792	0.840318471	0.005	0.995	0	0	2	8.83E-06	1	1	1	NA	NA	NA	NA
1351289	1206683059	PD9774b	3	28892873	T	C	-	-	-	-	-	-	34	0	0	42	6	14.28571429	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	0.755990196	0.899647244	0.840318471	0	1	0	0	2	7.02E-08	1	1	1	NA	NA	NA	NA
1351289	1206683084	PD9774b	3	29339789	A	C	RBMS3	CCDS33725.1	r.?	-	-	intronic	36	0	0	57	7	12.28070175	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	0.649886309	0.773380964	0.840318471	0.00375	0.99625	0	0	2	1.66E-08	1	1	1	NA	NA	NA	NA
1351289	1206683218	PD9774b	3	31282407	T	C	-	-	-	-	-	-	35	0	0	51	8	15.68627451	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	0.830106882	0.987847954	0.840318471	0	0.99875	0.00125	0	2	2.05E-10	1	1	1	NA	NA	NA	NA
1351289	1206683310	PD9774b	3	32683256	A	C	-	-	-	-	-	-	36	0	0	47	10	21.27659574	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	1.125942846	1.125942846	1	0	1	0	0	2	4.27E-14	1	1	1	NA	NA	NA	NA
1351289	1206683460	PD9774b	3	34268089	T	C	-	-	-	-	-	-	39	0	0	60	14	23.33333333	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	1.234783987	1.234783987	1	0	0.99875	0.00125	0	2	8.54E-20	1	1	1	NA	NA	NA	NA
1351289	1206683615	PD9774b	3	36937636	G	C	TRANK1	ENST00000429976	r.?	-	-	intronic	38	0	0	56	10	17.85714286	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	0.944987745	0.944987745	1	0.00125	0.99875	0	0	2	2.82E-13	1	1	1	NA	NA	NA	NA
1351289	1206683845	PD9774b	3	40247081	A	C	MYRIP	CCDS2689.1	r.?	-	-	intronic	31	0	0	43	9	20.93023256	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	1.107613543	1.107613543	1	0.00125	0.99875	0	0	2	9.45E-13	1	1	1	NA	NA	NA	NA
1351289	1206684065	PD9774b	3	43478727	G	C	ANO10	CCDS2710.2	r.?	-	-	intronic	41	0	0	67	5	7.462686567	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	0.394920252	0.469964978	0.840318471	0.00625	0.99375	0	0	2	2.33E-05	1	1	1	NA	NA	NA	NA
1351289	1206684163	PD9774b	3	44781100	A	C	ZNF501	CCDS2720.2	r.?	-	-	downstream	34	0	0	59	12	20.33898305	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	1.076325025	1.076325025	1	0	1	0	0	2	2.20E-16	1	1	1	NA	NA	NA	NA
1351289	1206684250	PD9774b	3	46037386	G	C	FYCO1	CCDS2734.1	r.?	-	-	upstream	31	0	0	24	5	20.83333333	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	1.102485703	1.102485703	1	0.00375	0.99625	0	0	2	1.23E-07	1	1	1	NA	NA	NA	NA
1351289	1206684633	PD9774b	3	50601299	A	C	C3orf18	CCDS2829.1	r.?	-	-	intronic	38	0	0	57	6	10.52631579	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	0.557045408	0.662897969	0.840318471	0.005	0.995	0	0	2	4.56E-07	1	1	1	NA	NA	NA	NA
1351289	1206684678	PD9774b	3	51250306	G	C	DOCK3	CCDS46835.1	r.?	-	-	intronic	33	0	0	38	7	18.42105263	248	0	0	213	21	9.85915493	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	0.974829464	0.974829464	1	0.0025	0.9975	0	0	2	8.61E-10	1	1.06E-20	1	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206684958	PD9774b	3	54895562	A	C	CACNA2D3	ENST00000474759	r.?	-	-	intronic	45	0	0	41	4	9.756097561	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	0.516285988	0.61439324	0.840318471	0.00625	0.99375	0	0	2	5.46E-05	1	1	1	NA	NA	NA	NA
1351289	1206685177	PD9774b	3	57631932	T	C	FAM116A	CCDS33773.1	r.?	-	-	intronic	35	0	0	49	9	18.36734694	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	0.971987395	0.971987395	1	0	1	0	0	2	3.35E-12	1	1	1	NA	NA	NA	NA
1351289	1206685213	PD9774b	3	58136164	T	C	FLNB	CCDS2885.1	r.?	-	-	intronic	32	0	0	69	19	27.53623188	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	1.457198494	1.457198494	1	0	0.985	0.015	0	2	6.95E-28	1	1	1	NA	NA	NA	NA
1351289	1206685317	PD9774b	3	59554189	A	C	-	-	-	-	-	-	27	0	0	40	9	22.5	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	1.190684559	1.190684559	1	0	0.99375	0.00625	0	2	4.64E-13	1	1	1	NA	NA	NA	NA
1351289	1206685511	PD9774b	3	62241354	T	C	PTPRG	CCDS2895.1	r.?	-	-	intronic	36	0	0	48	9	18.75	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	0.992237133	0.992237133	1	0	1	0	0	2	2.75E-12	1	1	1	NA	NA	NA	NA
1351289	1206685592	PD9774b	3	63375041	T	C	SYNPR	CCDS46859.1	r.?	-	-	intronic	31	0	0	41	4	9.756097561	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	0.516285988	0.61439324	0.840318471	0.00125	0.99875	0	0	2	5.46E-05	1	1	1	NA	NA	NA	NA
1351289	1206685802	PD9774b	3	66528062	G	C	LRIG1	CCDS33783.1	r.?	-	-	intronic	34	0	0	40	4	10	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	0.529193137	0.629753071	0.840318471	0.0025	0.9975	0	0	2	4.95E-05	1	1	1	NA	NA	NA	NA
1351289	1206685885	PD9774b	3	68219155	A	C	FAM19A1	ENST00000478136	r.?	-	-	intronic	36	0	0	47	5	10.63829787	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	0.562971423	0.669950075	0.840318471	0.0025	0.9975	0	0	2	4.02E-06	1	1	1	NA	NA	NA	NA
1351289	1206689009	PD9774b	3	76552048	T	C	ROBO2	ENST00000487694	r.?	-	-	intronic	33	0	0	51	5	9.803921569	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	0.518816801	0.617404971	0.840318471	0.0075	0.9925	0	0	2	6.06E-06	1	1	1	NA	NA	NA	NA
1351289	1206689012	PD9774b	3	76592795	G	C	ROBO2	ENST00000487694	r.?	-	-	intronic	26	0	0	55	4	7.272727273	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	0.384867736	0.458002233	0.840318471	0.00875	0.99125	0	0	2	0.000173903	1	1	1	NA	NA	NA	NA
1351289	1206689209	PD9774b	3	78752711	A	C	ROBO1	CCDS46872.1	r.?	-	-	intronic	28	0	0	63	4	6.349206349	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	0.335995643	0.399843219	0.840318471	0.02	0.98	0	0	2	0.000294233	1	1	1	NA	NA	NA	NA
1351289	1206689551	PD9774b	3	84419806	T	C	-	-	-	-	-	-	39	0	0	50	9	18	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	0.952547647	0.952547647	1	0	1	0	0	2	4.07E-12	1	1	1	NA	NA	NA	NA
1351289	1206689764	PD9774b	3	87073336	T	C	-	-	-	-	-	-	22	0	0	56	7	12.5	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.806451613	0.806451613	1	0.005	0.995	0	0	2	1.46E-08	1	1	1	NA	NA	NA	NA
1351289	1206690562	PD9774b	3	93638104	A	C	PROS1	CCDS2923.1	r.?	-	-	intronic	45	0	0	67	12	17.91044776	2	0	0	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.155512759	1.155512759	1	0	0.995	0.005	0	2	1.14E-15	1	1	1	NA	NA	NA	NA
1351289	1206690614	PD9774b	3	94294845	A	C	-	-	-	-	-	-	42	0	0	66	4	6.060606061	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.391006843	0.391006843	1	0.02625	0.97375	0	0	2	0.000351793	1	1	1	NA	NA	NA	NA
1351289	1206691036	PD9774b	3	99874309	A	C	C3orf26	CCDS2935.1	r.?	-	-	intronic	40	0	0	68	5	7.352941176	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.474383302	0.474383302	1	0.02375	0.97625	0	0	2	2.51E-05	1	1	1	NA	NA	NA	NA
1351289	1206691146	PD9774b	3	101199922	A	C	SENP7	CCDS2941.2	r.?	-	-	intronic	29	0	0	44	6	13.63636364	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.879765396	0.879765396	1	0.00125	0.99875	0	0	2	9.37E-08	1	1	1	NA	NA	NA	NA
1351289	1206691148	PD9774b	3	101224540	T	C	SENP7	CCDS2941.2	r.?	-	-	intronic	39	0	0	39	6	15.38461538	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.992555831	0.992555831	1	0.0025	0.995	0.0025	0	2	4.43E-08	1	1	1	NA	NA	NA	NA
1351289	1206691346	PD9774b	3	103915588	T	C	-	-	-	-	-	-	38	0	0	49	8	16.32653061	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.053324556	1.053324556	1	0	1	0	0	2	1.47E-10	1	1	1	NA	NA	NA	NA
1351289	1206691360	PD9774b	3	104065218	G	C	-	-	-	-	-	-	38	0	0	50	11	22	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.419354839	1.419354839	1	0	0.99375	0.00625	0	2	1.52E-15	1	1	1	NA	NA	NA	NA
1351289	1206691976	PD9774b	3	111977286	T	C	SLC9A10	CCDS33817.1	r.?	-	-	intronic	32	0	0	41	5	12.19512195	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	0.677041513	0.677041513	1	0.00375	0.99625	0	0	2	2.02E-06	1	1	1	NA	NA	NA	NA
1351289	1206692035	PD9774b	3	112487397	T	C	-	-	-	-	-	-	39	0	0	44	8	18.18181818	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	1.009407347	1.009407347	1	0.00125	0.99875	0	0	2	5.90E-11	1	1	1	NA	NA	NA	NA
1351289	1206692237	PD9774b	3	115187826	G	C	-	-	-	-	-	-	39	0	0	49	6	12.24489796	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	0.679804948	0.679804948	1	0.00625	0.99375	0	0	2	1.82E-07	1	1	1	NA	NA	NA	NA
1351289	1206692761	PD9774b	3	122274174	G	C	PARP9	CCDS3014.1	r.1177c>g	c.949C>G	p.L317V	missense	28	0	0	44	8	18.18181818	219	0	0	104	37	35.57692308	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	1.009407347	1.009407347	1	0.00125	0.99875	0	0	2	5.90E-11	1	1.08E-57	1	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206693203	PD9774b	3	127902979	A	C	EEFSEC	CCDS33849.1	r.?	-	-	intronic	29	0	0	57	11	19.29824561	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	1.0713885	1.0713885	1	0	1	0	0	2	7.29E-15	1	1	1	NA	NA	NA	NA
1351289	1206693210	PD9774b	3	128013925	G	C	EEFSEC	CCDS33849.1	r.?	-	-	intronic	31	0	0	57	8	14.03508772	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	0.779191637	0.779191637	1	0.00125	0.99875	0	0	2	5.19E-10	1	1	1	NA	NA	NA	NA
1351289	1206693281	PD9774b	3	129112995	G	C	SNORA7B	ENST00000384360	r.?	-	-	downstream	44	0	0	36	9	25	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	1.387935103	1.387935103	1	0.00125	0.98875	0.01	0	2	1.63E-13	1	1	1	NA	NA	NA	NA
1351289	1206693445	PD9774b	3	130656117	A	C	ATP2C1	CCDS46914.1	r.?	-	-	intronic	32	0	0	42	10	23.80952381	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	1.321842955	1.321842955	1	0	0.995	0.005	0	2	1.24E-14	1	1	1	NA	NA	NA	NA
1351289	1206693543	PD9774b	3	131960313	T	C	CPNE4	ENST00000512055	r.?	-	-	intronic	34	0	0	46	4	8.695652174	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	0.482760036	0.482760036	1	0.00625	0.99375	0	0	2	8.62E-05	1	1	1	NA	NA	NA	NA
1351289	1206693700	PD9774b	3	134386879	G	C	EPHB1	ENST00000460895	r.?	-	-	intronic	30	0	0	46	11	23.91304348	0	0	NA	2	0	0	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	1.327590098	1.327590098	1	0	0.99625	0.00375	0	2	5.55E-16	1	1	1	NA	NA	NA	NA
1351289	1206693761	PD9774b	3	135529808	G	C	-	-	-	-	-	-	37	0	0	42	6	14.28571429	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	0.793105773	0.793105773	1	0.0025	0.9975	0	0	2	7.02E-08	1	1	1	NA	NA	NA	NA
1351289	1206693854	PD9774b	3	136818621	T	C	-	-	-	-	-	-	29	0	0	70	10	14.28571429	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	0.793105773	0.793105773	1	0.0025	0.9975	0	0	2	2.95E-12	1	1	1	NA	NA	NA	NA
1351289	1206693913	PD9774b	3	137849468	G	C	A4GNT	CCDS3097.1	r.?	-	-	intronic	39	0	0	63	7	11.11111111	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	0.616860046	0.616860046	1	0.005	0.995	0	0	2	3.38E-08	1	1	1	NA	NA	NA	NA
1351289	1206693943	PD9774b	3	137974226	A	C	ARMC8	ENST00000469044	r.?	-	-	intronic	30	0	0	62	5	8.064516129	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	0.447721001	0.447721001	1	0.02625	0.97375	0	0	2	1.60E-05	1	1	1	NA	NA	NA	NA
1351289	1206694016	PD9774b	3	138843177	T	C	MRPS22	CCDS3107.1	r.?	-	-	intronic	28	0	0	43	4	9.302325581	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	0.516440968	0.516440968	1	0.0075	0.9925	0	0	2	6.60E-05	1	1	1	NA	NA	NA	NA
1351289	1206694050	PD9774b	3	139319822	T	C	NMNAT3	CCDS3111.1	r.?	-	-	intronic	29	0	0	57	7	12.28070175	3	0	0	4	0	0	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	0.681792682	0.681792682	1	0.0025	0.9975	0	0	2	1.66E-08	1	1	1	NA	NA	NA	NA
1351289	1206694086	PD9774b	3	139699372	G	C	CLSTN2	CCDS3112.1	r.?	-	-	intronic	28	0	0	78	24	30.76923077	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	1.708227819	1.708227819	1	0	0.83625	0.16375	0	2	3.63E-36	1	1	1	NA	NA	NA	NA
1351289	1206694113	PD9774b	3	139987058	T	C	CLSTN2	CCDS3112.1	r.?	-	-	intronic	32	0	0	64	10	15.625	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	0.867459439	0.867459439	1	0	1	0	0	2	1.16E-12	1	1	1	NA	NA	NA	NA
1351289	1206694135	PD9774b	3	140260099	A	C	CLSTN2	CCDS3112.1	r.?	-	-	intronic	36	0	0	61	4	6.557377049	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	0.364048551	0.364048551	1	0.03125	0.96875	0	0	2	0.000259828	1	1	1	NA	NA	NA	NA
1351289	1206694168	PD9774b	3	140805361	G	C	SPSB4	CCDS3115.1	r.?	-	-	intronic	24	0	0	65	5	7.692307692	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	0.427056955	0.427056955	1	0.015	0.985	0	0	2	2.01E-05	1	1	1	NA	NA	NA	NA
1351289	1206694303	PD9774b	3	142110030	T	C	XRN1	CCDS3123.1	r.?	-	-	intronic	44	0	0	65	5	7.692307692	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	0.427056955	0.427056955	1	0.01875	0.98125	0	0	2	2.01E-05	1	1	1	NA	NA	NA	NA
1351289	1206694399	PD9774b	3	143067424	G	C	SLC9A9	CCDS33872.1	r.?	-	-	intronic	25	0	0	61	6	9.836065574	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	0.546072827	0.546072827	1	0.0075	0.9925	0	0	2	6.85E-07	1	1	1	NA	NA	NA	NA
1351289	1206694400	PD9774b	3	143084977	G	C	SLC9A9	CCDS33872.1	r.?	-	-	intronic	37	0	0	60	17	28.33333333	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	1.572993116	1.572993116	1	0	0.98375	0.01625	0	2	2.41E-25	1	1	1	NA	NA	NA	NA
1351289	1206694542	PD9774b	3	144731958	T	C	-	-	-	-	-	-	33	0	0	59	9	15.25423729	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	0.846875656	0.846875656	1	0.00125	0.99875	0	0	2	1.96E-11	1	1	1	NA	NA	NA	NA
1351289	1206694720	PD9774b	3	146641334	T	C	-	-	-	-	-	-	30	0	0	67	13	19.40298507	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	1.077203363	1.077203363	1	0	1	0	0	2	2.41E-17	1	1	1	NA	NA	NA	NA
1351289	1206694722	PD9774b	3	146644236	T	C	-	-	-	-	-	-	25	0	0	61	13	21.31147541	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	1.183157792	1.183157792	1	0	1	0	0	2	6.41E-18	1	1	1	NA	NA	NA	NA
1351289	1206694741	PD9774b	3	146852856	G	C	-	-	-	-	-	-	32	0	0	53	7	13.20754717	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	0.733248733	0.733248733	1	0.00625	0.99375	0	0	2	9.85E-09	1	1	1	NA	NA	NA	NA
1351289	1206694749	PD9774b	3	146878380	T	C	-	-	-	-	-	-	36	0	0	60	11	18.33333333	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	1.017819075	1.017819075	1	0	1	0	0	2	1.34E-14	1	1	1	NA	NA	NA	NA
1351289	1206694761	PD9774b	3	146992419	T	C	-	-	-	-	-	-	32	0	0	54	5	9.259259259	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	0.514050038	0.514050038	1	0.0075	0.9925	0	0	2	8.06E-06	1	1	1	NA	NA	NA	NA
1351289	1206694779	PD9774b	3	147240111	A	C	-	-	-	-	-	-	34	0	0	70	5	7.142857143	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	0.396552886	0.396552886	1	0.02125	0.97875	0	0	2	2.89E-05	1	1	1	NA	NA	NA	NA
1351289	1206694845	PD9774b	3	148223942	A	C	-	-	-	-	-	-	36	0	0	73	21	28.76712329	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	1.597076008	1.597076008	1	0	0.94625	0.05375	0	2	4.03E-31	1	1	1	NA	NA	NA	NA
1351289	1206694989	PD9774b	3	149642178	G	C	RNF13	CCDS3146.1	r.?	-	-	intronic	30	0	0	79	13	16.4556962	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	0.913577536	0.913577536	1	0	1	0	0	2	2.37E-16	1	1	1	NA	NA	NA	NA
1351289	1206695094	PD9774b	3	150498390	G	C	ENSG00000224010	ENST00000412550	r.?	-	-	intronic	28	0	0	66	5	7.575757576	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	0.420586395	0.420586395	1	0.02375	0.97625	0	0	2	2.17E-05	1	1	1	NA	NA	NA	NA
1351289	1206695141	PD9774b	3	151058315	G	C	MED12L	CCDS33876.1	r.?	-	-	intronic	33	0	0	88	8	9.090909091	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	0.504703674	0.504703674	1	0.015	0.985	0	0	2	1.76E-08	1	1	1	NA	NA	NA	NA
1351289	1206695202	PD9774b	3	151608362	A	C	-	-	-	-	-	-	24	0	0	71	27	38.02816901	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	2.111225226	2.111225226	1	0	0.12875	0.86625	0.005	3	1.77E-43	1	1	1	NA	NA	NA	NA
1351289	1206695206	PD9774b	3	151651864	G	C	-	-	-	-	-	-	30	0	0	79	19	24.05063291	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	1.335228706	1.335228706	1	0	0.99625	0.00375	0	2	1.27E-26	1	1	1	NA	NA	NA	NA
1351289	1206695234	PD9774b	3	152059203	T	C	MBNL1	CCDS3165.1	r.?	-	-	intronic	33	0	0	79	10	12.65822785	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	0.702751951	0.702751951	1	0.0025	0.9975	0	0	2	1.03E-11	1	1	1	NA	NA	NA	NA
1351289	1206695417	PD9774b	3	153433406	G	C	-	-	-	-	-	-	23	0	0	60	11	18.33333333	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	1.017819075	1.017819075	1	0	1	0	0	2	1.34E-14	1	1	1	NA	NA	NA	NA
1351289	1206695502	PD9774b	3	154605410	G	C	-	-	-	-	-	-	31	0	0	62	24	38.70967742	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	2.149060804	2.149060804	1	0	0.2	0.79625	0.00375	3	4.81E-39	1	1	1	NA	NA	NA	NA
1351289	1206695599	PD9774b	3	155808928	T	C	KCNAB1	ENST00000472028	r.?	-	-	intronic	25	0	0	60	5	8.333333333	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	0.462645034	0.462645034	1	0.01875	0.98125	0	0	2	1.36E-05	1	1	1	NA	NA	NA	NA
1351289	1206695615	PD9774b	3	156054984	T	C	KCNAB1	CCDS33882.1	r.?	-	-	intronic	40	0	0	60	14	23.33333333	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	1.295406096	1.295406096	1	0	1	0	0	2	8.54E-20	1	1	1	NA	NA	NA	NA
1351289	1206695625	PD9774b	3	156202295	G	C	KCNAB1	CCDS33882.1	r.?	-	-	intronic	33	0	0	71	17	23.94366197	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	1.329289957	1.329289957	1	0	0.995	0.005	0	2	6.12E-24	1	1	1	NA	NA	NA	NA
1351289	1206695750	PD9774b	3	157760139	G	C	-	-	-	-	-	-	40	0	0	48	5	10.41666667	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	0.578306293	0.578306293	1	0.00625	0.99375	0	0	2	4.47E-06	1	1	1	NA	NA	NA	NA
1351289	1206696114	PD9774b	3	162030559	T	C	-	-	-	-	-	-	19	0	0	52	7	13.46153846	0	0	NA	0	0	NA	2.803739453	1	1	0.196260547	2	1	0.803739453	unphased	0.976682048	0.976682048	1	0	1	0	0	2	8.58E-09	1	1	1	NA	NA	NA	NA
1351289	1206696640	PD9774b	3	167348519	A	C	WDR49	CCDS3201.1	r.?	-	-	intronic	36	0	0	73	9	12.32876712	0	0	NA	0	0	NA	3.558173709	2	1	0.441826291	3	1	0.558173709	unphased	0.987507938	0.987507938	1	0.0025	0.9975	0	0	2	1.42E-10	1	1	1	NA	NA	NA	NA
1351289	1206696645	PD9774b	3	167386132	G	C	PDCD10	CCDS3202.1	r.?	-	-	intronic	22	0	0	72	5	6.944444444	0	0	NA	0	0	NA	3.558173709	2	1	0.441826291	3	1	0.558173709	unphased	0.556235181	0.996527018	0.558173709	0.00375	0.99375	0.0025	0	2	3.31E-05	1	1	1	NA	NA	NA	NA
1351289	1206696654	PD9774b	3	167513531	T	C	SERPINI1	CCDS3203.1	r.?	-	-	intronic	23	0	0	63	21	33.33333333	0	0	NA	0	0	NA	3.558173709	2	1	0.441826291	3	1	0.558173709	unphased	2.669928871	1.043685525	2.558173709	0	1	0	0	2	1.08E-32	1	1	1	NA	NA	NA	NA
1351289	1206696717	PD9774b	3	168293495	G	C	-	-	-	-	-	-	38	0	0	56	16	28.57142857	0	0	NA	0	0	NA	3.558173709	2	1	0.441826291	3	1	0.558173709	unphased	2.288510461	0.894587593	2.558173709	0	1	0	0	2	5.26E-24	1	1	1	NA	NA	NA	NA
1351289	1206696897	PD9774b	3	169856873	T	C	PHC3	CCDS46952.1	r.?	-	-	intronic	34	0	0	60	8	13.33333333	0	0	NA	0	0	NA	3.558173709	2	1	0.441826291	3	1	0.558173709	unphased	1.067971548	1.067971548	1	0	0.99875	0.00125	0	2	7.93E-10	1	1	1	NA	NA	NA	NA
1351289	1206697185	PD9774b	3	171872031	G	C	FNDC3B	CCDS3217.1	r.?	-	-	intronic	25	0	0	98	4	4.081632653	0	0	NA	0	0	NA	6.531613402	5	1	0.468386598	6	1	0.531613402	unphased	0.448294951	0.843272479	0.531613402	0.00375	0.995	0.00125	0	2	0.001553635	1	1	1	NA	NA	NA	NA
1351289	1206697276	PD9774b	3	172319389	G	C	-	-	-	-	-	-	30	0	0	116	6	5.172413793	0	0	NA	0	0	NA	6.531613402	5	1	0.468386598	6	1	0.531613402	unphased	0.568097912	1.06862978	0.531613402	0	1	0	0	2	2.90E-05	1	1	1	NA	NA	NA	NA
1351289	1206697825	PD9774b	3	176092292	A	C	-	-	-	-	-	-	44	0	0	87	7	8.045977011	0	0	NA	0	0	NA	3.857929349	3	0	0.142070651	3	1	0.857929349	unphased	0.668583859	0.779299438	0.857929349	0.00125	0.99875	0	0	2	3.22E-07	1	1	1	NA	NA	NA	NA
1351289	1206697842	PD9774b	3	176174167	G	C	-	-	-	-	-	-	49	0	0	74	34	45.94594595	0	0	NA	0	0	NA	3.857929349	3	0	0.142070651	3	1	0.857929349	unphased	3.817897792	1.272632597	3	0	0.995	0.005	0	2	6.58E-58	1	1	1	NA	NA	NA	NA
1351289	1206697927	PD9774b	3	176974847	T	C	-	-	-	-	-	-	40	0	0	60	9	15	0	0	NA	0	0	NA	3.857929349	3	0	0.142070651	3	1	0.857929349	unphased	1.246431338	1.246431338	1	0	0.99875	0.00125	0	2	2.29E-11	1	1	1	NA	NA	NA	NA
1351289	1206698113	PD9774b	3	178831623	G	C	-	-	-	-	-	-	40	0	0	67	4	5.970149254	0	0	NA	0	0	NA	3.857929349	3	0	0.142070651	3	1	0.857929349	unphased	0.496092075	0.578243506	0.857929349	0.005	0.995	0	0	2	0.000372648	1	1	1	NA	NA	NA	NA
1351289	1206698228	PD9774b	3	180049833	G	C	-	-	-	-	-	-	37	0	0	82	28	34.14634146	0	0	NA	2	0	0	3.857929349	3	0	0.142070651	3	1	0.857929349	unphased	2.837404672	0.945801557	3	0	1	0	0	2	1.94E-43	1	1	1	NA	NA	NA	NA
1351289	1206698277	PD9774b	3	180676666	G	C	FXR1	CCDS33894.1	r.?	-	-	intronic	29	0	0	67	19	28.35820896	0	0	NA	0	0	NA	3.857929349	3	0	0.142070651	3	1	0.857929349	unphased	2.356437355	1.100074526	2.142070651	0.00125	0.9975	0.00125	0	2	3.67E-28	1	1	1	NA	NA	NA	NA
1351289	1206698289	PD9774b	3	180871664	A	C	-	-	-	-	-	-	40	0	0	86	29	33.72093023	0	0	NA	0	0	NA	3.857929349	3	0	0.142070651	3	1	0.857929349	unphased	2.802054946	0.934018315	3	0	1	0	0	2	9.55E-45	1	1	1	NA	NA	NA	NA
1351289	1206698290	PD9774b	3	180879386	G	C	-	-	-	-	-	-	44	0	0	60	14	23.33333333	0	0	NA	0	0	NA	3.857929349	3	0	0.142070651	3	1	0.857929349	unphased	1.938893192	0.969446596	2	0	0.99875	0.00125	0	2	8.54E-20	1	1	1	NA	NA	NA	NA
1351289	1206698363	PD9774b	3	181637757	G	C	-	-	-	-	-	-	37	0	0	71	27	38.02816901	0	0	NA	0	0	NA	3.857929349	3	0	0.142070651	3	1	0.857929349	unphased	3.159966772	1.053322257	3	0	1	0	0	2	1.77E-43	1	1	1	NA	NA	NA	NA
1351289	1206698695	PD9774b	3	184218124	A	C	EIF2B5	ENST00000444495	r.?	-	-	intronic	36	0	0	62	6	9.677419355	0	0	NA	0	0	NA	3.857929349	3	0	0.142070651	3	1	0.857929349	unphased	0.80414925	0.93731407	0.857929349	0.00125	0.9975	0.00125	0	2	7.56E-07	1	1	1	NA	NA	NA	NA
1351289	1206698984	PD9774b	3	187073284	A	C	-	-	-	-	-	-	26	0	0	47	4	8.510638298	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	0.634179822	0.634179822	1	0.00375	0.99625	0	0	2	9.39E-05	1	1	1	NA	NA	NA	NA
1351289	1206699329	PD9774b	3	191253856	T	C	-	-	-	-	-	-	48	0	0	46	8	17.39130435	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.774193548	0.774193548	1	0.0025	0.9975	0	0	2	8.61E-11	1	1	1	NA	NA	NA	NA
1351289	1206699444	PD9774b	3	193192330	G	C	ATP13A4	CCDS3304.2	r.?	-	-	intronic	27	0	0	46	5	10.86956522	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.483870968	0.483870968	1	0.01375	0.98625	0	0	2	3.61E-06	1	1	1	NA	NA	NA	NA
1351289	1206699456	PD9774b	3	193376102	T	C	OPA1	CCDS33917.1	r.?	-	-	intronic	44	0	0	51	5	9.803921569	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.436432638	0.436432638	1	0.02125	0.97875	0	0	2	6.06E-06	1	1	1	NA	NA	NA	NA
1351289	1206699570	PD9774b	3	194998076	G	C	ACAP2	CCDS33924.1	r.4549c>g	c.?	p.?	3'UTR variant	34	0	0	48	4	8.333333333	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.370967742	0.370967742	1	0.0275	0.9725	0	0	2	0.000102016	1	1	1	NA	NA	NA	NA
1351289	1206700074	PD9774b	3	195662835	T	C	-	-	-	-	-	-	36	0	0	49	7	14.28571429	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.6359447	0.6359447	1	0.005	0.995	0	0	2	5.58E-09	1	1	1	NA	NA	NA	NA
1351289	1206700158	PD9774b	3	195731212	G	C	-	-	-	-	-	-	29	0	0	45	4	8.888888889	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.395698925	0.395698925	1	0.02375	0.97625	0	0	2	7.91E-05	1	1	1	NA	NA	NA	NA
1351289	1206700256	PD9774b	3	196725199	G	C	MFI2	CCDS3325.1	r.?	-	-	downstream	24	0	0	48	6	12.5	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.556451613	0.556451613	1	0.005	0.995	0	0	2	1.60E-07	1	1	1	NA	NA	NA	NA
1351289	1206700450	PD9774b	3	197470808	T	C	MIR922	CCDS46987.1	r.?	-	-	intronic	37	0	0	37	5	13.51351351	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.601569311	0.601569311	1	0.00625	0.99375	0	0	2	1.19E-06	1	1	1	NA	NA	NA	NA
1351289	1206700474	PD9774b	3	197721842	T	C	LMLN	CCDS3332.1	r.?	-	-	intronic	34	0	0	39	4	10.25641026	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.456575682	0.456575682	1	0.01375	0.98625	0	0	2	4.47E-05	1	1	1	NA	NA	NA	NA
1351289	1206700774	PD9774b	4	1144220	G	C	-	-	-	-	-	-	29	0	0	34	4	11.76470588	0	0	NA	0	0	NA	0.822303617	0	0	0.177696383	1	0	0.822303617	unphased	0.620460767	0.754539752	0.822303617	0.005	0.995	0	0	2	2.57E-05	1	1	1	NA	NA	NA	NA
1351289	1206701280	PD9774b	4	4466140	T	C	STX18	CCDS3377.1	r.?	-	-	intronic	48	0	0	62	7	11.29032258	0	0	NA	0	0	NA	0.822303617	0	0	0.177696383	1	0	0.822303617	unphased	0.595442188	0.724114762	0.822303617	0.005	0.995	0	0	2	3.02E-08	1	1	1	NA	NA	NA	NA
1351289	1206701993	PD9774b	4	12171556	T	C	-	-	-	-	-	-	37	0	0	44	4	9.090909091	0	0	NA	0	0	NA	0.822303617	0	0	0.177696383	1	0	0.822303617	unphased	0.479446956	0.583053444	0.822303617	0.005	0.995	0	0	2	7.23E-05	1	1	1	NA	NA	NA	NA
1351289	1206702031	PD9774b	4	12880364	T	C	-	-	-	-	-	-	38	0	0	42	6	14.28571429	0	0	NA	0	0	NA	0.822303617	0	0	0.177696383	1	0	0.822303617	unphased	0.753416646	0.916226841	0.822303617	0	1	0	0	2	7.02E-08	1	1	1	NA	NA	NA	NA
1351289	1206702931	PD9774b	4	24829317	T	C	CCDC149	ENST00000504487	r.?	-	-	intronic	37	0	0	37	8	21.62162162	0	0	NA	0	0	NA	0.822303617	0	0	0.177696383	1	0	0.822303617	unphased	1.140306275	1.140306275	1	0.00125	0.99125	0.0075	0	2	1.33E-11	1	1	1	NA	NA	NA	NA
1351289	1206702937	PD9774b	4	24977509	G	C	CCDC149	ENST00000389609	r.?	-	-	intronic	25	0	0	47	4	8.510638298	0	0	NA	0	0	NA	0.822303617	0	0	0.177696383	1	0	0.822303617	unphased	0.448843959	0.545837267	0.822303617	0.01125	0.98875	0	0	2	9.39E-05	1	1	1	NA	NA	NA	NA
1351289	1206703135	PD9774b	4	26911306	G	C	STIM2	CCDS3440.1	r.?	-	-	intronic	32	0	0	51	6	11.76470588	0	0	NA	0	0	NA	0.822303617	0	0	0.177696383	1	0	0.822303617	unphased	0.620460767	0.754539752	0.822303617	0	1	0	0	2	2.32E-07	1	1	1	NA	NA	NA	NA
1351289	1206703140	PD9774b	4	27008807	T	C	STIM2	CCDS3440.1	r.?	-	-	intronic	46	0	0	57	15	26.31578947	0	0	NA	0	0	NA	0.822303617	0	0	0.177696383	1	0	0.822303617	unphased	1.387872769	1.387872769	1	0	0.98625	0.01375	0	2	5.53E-22	1	1	1	NA	NA	NA	NA
1351289	1206703365	PD9774b	4	30037345	G	C	ENSG00000237496	ENST00000424014	r.?	-	-	intronic	28	0	0	60	10	16.66666667	0	0	NA	0	0	NA	1.766479176	1	0	0.233520824	1	1	0.766479176	unphased	1.03634868	1.03634868	1	0.0025	0.99625	0.00125	0	2	5.86E-13	1	1	1	NA	NA	NA	NA
1351289	1206703375	PD9774b	4	30097732	G	C	ENSG00000237496	ENST00000424014	r.?	-	-	intronic	33	0	0	64	8	12.5	0	0	NA	0	0	NA	1.766479176	1	0	0.233520824	1	1	0.766479176	unphased	0.77726151	1.014067354	0.766479176	0.0025	0.9975	0	0	2	1.35E-09	1	1	1	NA	NA	NA	NA
1351289	1206703469	PD9774b	4	31184550	A	C	-	-	-	-	-	-	25	0	0	69	17	24.63768116	0	0	NA	0	0	NA	1.766479176	1	0	0.233520824	1	1	0.766479176	unphased	1.531993701	1.531993701	1	0	0.99125	0.00875	0	2	3.56E-24	1	1	1	NA	NA	NA	NA
1351289	1206703551	PD9774b	4	32167825	G	C	-	-	-	-	-	-	49	0	0	65	8	12.30769231	0	0	NA	0	0	NA	1.766479176	1	0	0.233520824	1	1	0.766479176	unphased	0.765303641	0.998466318	0.766479176	0.0025	0.99625	0.00125	0	2	1.53E-09	1	1	1	NA	NA	NA	NA
1351289	1206703612	PD9774b	4	32936171	A	C	-	-	-	-	-	-	47	0	0	58	9	15.51724138	0	0	NA	0	0	NA	1.766479176	1	0	0.233520824	1	1	0.766479176	unphased	0.964876357	0.964876357	1	0	1	0	0	2	1.67E-11	1	1	1	NA	NA	NA	NA
1351289	1206703654	PD9774b	4	33431288	A	C	-	-	-	-	-	-	33	0	0	53	13	24.52830189	0	0	NA	0	0	NA	1.766479176	1	0	0.233520824	1	1	0.766479176	unphased	1.525192397	1.525192397	1	0	0.98625	0.01375	0	2	8.53E-19	1	1	1	NA	NA	NA	NA
1351289	1206703662	PD9774b	4	33522570	G	C	-	-	-	-	-	-	45	0	0	54	9	16.66666667	0	0	NA	0	0	NA	1.766479176	1	0	0.233520824	1	1	0.766479176	unphased	1.03634868	1.03634868	1	0	0.99875	0.00125	0	2	8.48E-12	1	1	1	NA	NA	NA	NA
1351289	1206703839	PD9774b	4	34630730	A	C	-	-	-	-	-	-	45	0	0	47	6	12.76595745	0	0	NA	0	0	NA	1.766479176	1	0	0.233520824	1	1	0.766479176	unphased	0.793798989	1.035643255	0.766479176	0	0.9975	0.0025	0	2	1.41E-07	1	1	1	NA	NA	NA	NA
1351289	1206703960	PD9774b	4	36446648	G	C	-	-	-	-	-	-	39	0	0	58	6	10.34482759	0	0	NA	0	0	NA	1.766479176	1	0	0.233520824	1	1	0.766479176	unphased	0.643250905	0.839228155	0.766479176	0.00125	0.99875	0	0	2	5.06E-07	1	1	1	NA	NA	NA	NA
1351289	1206704136	PD9774b	4	38593056	G	C	-	-	-	-	-	-	36	0	0	65	9	13.84615385	0	0	NA	0	0	NA	1.766479176	1	0	0.233520824	1	1	0.766479176	unphased	0.860966596	1.123274607	0.766479176	0	1	0	0	2	4.85E-11	1	1	1	NA	NA	NA	NA
1351289	1206704167	PD9774b	4	38801804	G	C	TLR1	CCDS33973.1	r.?	-	-	intronic	27	0	0	61	13	21.31147541	0	0	NA	0	0	NA	1.766479176	1	0	0.233520824	1	1	0.766479176	unphased	1.325167164	1.325167164	1	0	0.995	0.005	0	2	6.41E-18	1	1	1	NA	NA	NA	NA
1351289	1206704183	PD9774b	4	38979567	T	C	TMEM156	CCDS3448.1	r.?	-	-	intronic	32	0	0	62	9	14.51612903	0	0	NA	0	0	NA	1.766479176	1	0	0.233520824	1	1	0.766479176	unphased	0.90262627	0.90262627	1	0	1	0	0	2	3.12E-11	1	1	1	NA	NA	NA	NA
1351289	1206704648	PD9774b	4	43026031	G	C	GRXCR1	CCDS43225.1	r.?	-	-	intronic	32	0	0	49	4	8.163265306	0	0	NA	0	0	NA	1.766479176	1	0	0.233520824	1	1	0.766479176	unphased	0.507599353	0.662248068	0.766479176	0.0025	0.9975	0	0	2	0.000110643	1	1	1	NA	NA	NA	NA
1351289	1206704697	PD9774b	4	43509786	T	C	-	-	-	-	-	-	34	0	0	60	7	11.66666667	0	0	NA	0	0	NA	1.766479176	1	0	0.233520824	1	1	0.766479176	unphased	0.725444076	0.946462864	0.766479176	0.0025	0.99625	0.00125	0	2	2.39E-08	1	1	1	NA	NA	NA	NA
1351289	1206704725	PD9774b	4	43813613	A	C	-	-	-	-	-	-	38	0	0	58	9	15.51724138	0	0	NA	0	0	NA	1.766479176	1	0	0.233520824	1	1	0.766479176	unphased	0.964876357	0.964876357	1	0	1	0	0	2	1.67E-11	1	1	1	NA	NA	NA	NA
1351289	1206704857	PD9774b	4	45235680	T	C	-	-	-	-	-	-	37	0	0	67	6	8.955223881	0	0	NA	0	0	NA	1.766479176	1	0	0.233520824	1	1	0.766479176	unphased	0.556844067	0.726496015	0.766479176	0	1	0	0	2	1.20E-06	1	1	1	NA	NA	NA	NA
1351289	1206705132	PD9774b	4	48651760	A	C	FRYL	CCDS43227.1	r.?	-	-	intronic	37	0	0	65	8	12.30769231	0	0	NA	0	0	NA	1.766479176	1	0	0.233520824	1	1	0.766479176	unphased	0.765303641	0.998466318	0.766479176	0.00125	0.99625	0.0025	0	2	1.53E-09	1	1	1	NA	NA	NA	NA
1351289	1206711459	PD9774b	4	54863214	A	C	AC110792.1	ENST00000511394	r.?	-	-	intronic	26	0	0	74	17	22.97297297	0	0	NA	0	0	NA	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	1.34E-23	1	1	1	NA	NA	NA	NA
1351289	1206711542	PD9774b	4	55778893	G	C	-	-	-	-	-	-	35	0	0	56	9	16.07142857	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.036866359	1.036866359	1	0	1	0	0	2	1.20E-11	1	1	1	NA	NA	NA	NA
1351289	1206711825	PD9774b	4	58981011	G	C	-	-	-	-	-	-	39	0	0	71	4	5.633802817	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.363471149	0.363471149	1	0.0175	0.9825	0	0	2	0.000464961	1	1	1	NA	NA	NA	NA
1351289	1206711900	PD9774b	4	59903720	T	C	-	-	-	-	-	-	44	0	0	57	10	17.54385965	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.131861913	1.131861913	1	0.00125	0.9975	0.00125	0	2	3.40E-13	1	1	1	NA	NA	NA	NA
1351289	1206711901	PD9774b	4	59903758	T	C	-	-	-	-	-	-	48	0	0	53	11	20.75471698	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.339013999	1.339013999	1	0	0.99875	0.00125	0	2	3.07E-15	1	1	1	NA	NA	NA	NA
1351289	1206712193	PD9774b	4	62741277	G	C	LPHN3	ENST00000512091	r.?	-	-	intronic	39	0	0	67	10	14.92537313	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.962927299	0.962927299	1	0.00125	0.9975	0.00125	0	2	1.87E-12	1	1	1	NA	NA	NA	NA
1351289	1206712289	PD9774b	4	64026497	T	C	-	-	-	-	-	-	29	0	0	53	8	15.09433962	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.973828363	0.973828363	1	0	1	0	0	2	2.83E-10	1	1	1	NA	NA	NA	NA
1351289	1206712499	PD9774b	4	66030193	T	C	-	-	-	-	-	-	33	0	0	52	9	17.30769231	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.11662531	1.11662531	1	0	1	0	0	2	5.92E-12	1	1	1	NA	NA	NA	NA
1351289	1206712599	PD9774b	4	67520413	A	C	-	-	-	-	-	-	21	0	0	47	11	23.40425532	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.509951956	1.509951956	1	0.00125	0.995	0.00375	0	2	7.21E-16	1	1	1	NA	NA	NA	NA
1351289	1206712600	PD9774b	4	67547582	T	C	-	-	-	-	-	-	35	0	0	50	7	14	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.903225806	0.903225806	1	0.00125	0.99875	0	0	2	6.46E-09	1	1	1	NA	NA	NA	NA
1351289	1206712675	PD9774b	4	68224147	G	C	-	-	-	-	-	-	37	0	0	69	7	10.14492754	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.654511454	0.654511454	1	0.00125	0.99875	0	0	2	6.43E-08	1	1	1	NA	NA	NA	NA
1351289	1206712693	PD9774b	4	68426964	G	C	STAP1	CCDS3515.1	r.?	-	-	intronic	34	0	0	54	4	7.407407407	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.477897252	0.477897252	1	0.01125	0.98875	0	0	2	0.000161898	1	1	1	NA	NA	NA	NA
1351289	1206712903	PD9774b	4	70287958	A	C	UGT2B28	ENST00000381079	r.?	-	-	intronic	35	0	0	42	8	19.04761905	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.228878648	1.228878648	1	0	0.9975	0.0025	0	2	3.96E-11	1	1	1	NA	NA	NA	NA
1351289	1206712958	PD9774b	4	70889731	G	C	HTN3	CCDS33999.1	r.?	-	-	upstream	37	0	0	64	7	10.9375	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.705645161	0.705645161	1	0.00375	0.99625	0	0	2	3.78E-08	1	1	1	NA	NA	NA	NA
1351289	1206712987	PD9774b	4	71126802	G	C	-	-	-	-	-	-	41	0	0	57	5	8.771929825	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.565930956	0.565930956	1	0.00125	0.99875	0	0	2	1.05E-05	1	1	1	NA	NA	NA	NA
1351289	1206713005	PD9774b	4	71373665	A	C	-	-	-	-	-	-	32	0	0	52	6	11.53846154	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.744416873	0.744416873	1	0.0025	0.9975	0	0	2	2.61E-07	1	1	1	NA	NA	NA	NA
1351289	1206713056	PD9774b	4	71823622	G	C	MOBKL1A	CCDS34002.1	r.?	-	-	intronic	28	0	0	50	6	12	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.774193548	0.774193548	1	0.00125	0.99875	0	0	2	2.06E-07	1	1	1	NA	NA	NA	NA
1351289	1206713126	PD9774b	4	72840990	G	C	-	-	-	-	-	-	45	0	0	67	6	8.955223881	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.577756379	0.577756379	1	0.00125	0.99875	0	0	2	1.20E-06	1	1	1	NA	NA	NA	NA
1351289	1206713262	PD9774b	4	74358300	G	C	AFM	CCDS3557.1	r.?	-	-	intronic	43	0	0	58	4	6.896551724	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.444938821	0.444938821	1	0.01375	0.98625	0	0	2	0.000213772	1	1	1	NA	NA	NA	NA
1351289	1206713284	PD9774b	4	74504545	T	C	-	-	-	-	-	-	34	0	0	69	11	15.94202899	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.028517999	1.028517999	1	0	0.9975	0.0025	0	2	6.82E-14	1	1	1	NA	NA	NA	NA
1351289	1206713424	PD9774b	4	76540544	G	C	CDKL2	CCDS3570.1	r.?	-	-	intronic	46	0	0	44	7	15.90909091	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.026392962	1.026392962	1	0.00125	0.99875	0	0	2	2.55E-09	1	1	1	NA	NA	NA	NA
1351289	1206713511	PD9774b	4	77310586	G	C	CCDC158	CCDS43242.1	r.?	-	-	intronic	37	0	0	53	5	9.433962264	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.608642727	0.608642727	1	0.005	0.995	0	0	2	7.34E-06	1	1	1	NA	NA	NA	NA
1351289	1206713658	PD9774b	4	79199604	G	C	FRAS1	ENST00000264895	r.?	-	-	intronic	40	0	0	64	9	14.0625	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.907258065	0.907258065	1	0	1	0	0	2	4.20E-11	1	1	1	NA	NA	NA	NA
1351289	1206713704	PD9774b	4	80128107	T	C	-	-	-	-	-	-	35	0	0	60	5	8.333333333	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.537634409	0.537634409	1	0.00625	0.99375	0	0	2	1.36E-05	1	1	1	NA	NA	NA	NA
1351289	1206713711	PD9774b	4	80269606	T	C	-	-	-	-	-	-	37	0	0	62	11	17.74193548	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.144640999	1.144640999	1	0	1	0	0	2	1.96E-14	1	1	1	NA	NA	NA	NA
1351289	1206713723	PD9774b	4	80445199	T	C	-	-	-	-	-	-	41	0	0	60	7	11.66666667	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.752688172	0.752688172	1	0.00125	0.99875	0	0	2	2.39E-08	1	1	1	NA	NA	NA	NA
1351289	1206713808	PD9774b	4	81637898	A	C	C4orf22	CCDS3587.1	r.?	-	-	intronic	27	0	0	57	7	12.28070175	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.792303339	0.792303339	1	0.0025	0.9975	0	0	2	1.66E-08	1	1	1	NA	NA	NA	NA
1351289	1206713832	PD9774b	4	82061557	T	C	PRKG2	CCDS3589.1	r.?	-	-	intronic	47	0	0	55	6	10.90909091	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.576766972	0.690393549	0.835417673	0.00375	0.99625	0	0	2	3.67E-07	1	1	1	NA	NA	NA	NA
1351289	1206713856	PD9774b	4	82402731	G	C	-	-	-	-	-	-	37	0	0	55	6	10.90909091	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.576766972	0.690393549	0.835417673	0.0025	0.9975	0	0	2	3.67E-07	1	1	1	NA	NA	NA	NA
1351289	1206713927	PD9774b	4	83165206	G	C	-	-	-	-	-	-	30	0	0	50	11	22	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	1.163146727	1.163146727	1	0	0.99875	0.00125	0	2	1.52E-15	1	1	1	NA	NA	NA	NA
1351289	1206714081	PD9774b	4	85282507	A	C	-	-	-	-	-	-	39	0	0	57	13	22.80701754	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	1.205813991	1.205813991	1	0.00125	0.99625	0.0025	0	2	2.44E-18	1	1	1	NA	NA	NA	NA
1351289	1206714146	PD9774b	4	86107882	T	C	-	-	-	-	-	-	33	0	0	44	12	27.27272727	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	1.44191743	1.44191743	1	0	0.98875	0.01125	0	2	4.44E-18	1	1	1	NA	NA	NA	NA
1351289	1206714681	PD9774b	4	92697971	A	C	-	-	-	-	-	-	32	0	0	43	7	16.27906977	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.860679396	1.030238435	0.835417673	0	0.99875	0.00125	0	2	2.15E-09	1	1	1	NA	NA	NA	NA
1351289	1206714846	PD9774b	4	95724328	G	C	BMPR1B	ENST00000515059	r.?	-	-	intronic	29	0	0	50	6	12	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.634443669	0.759432904	0.835417673	0	1	0	0	2	2.06E-07	1	1	1	NA	NA	NA	NA
1351289	1206714878	PD9774b	4	96236695	T	C	UNC5C	CCDS3643.1	r.?	-	-	intronic	33	0	0	53	5	9.433962264	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.498776469	0.597038446	0.835417673	0.0025	0.9975	0	0	2	7.34E-06	1	1	1	NA	NA	NA	NA
1351289	1206715022	PD9774b	4	98632770	T	C	C4orf37	CCDS3645.1	r.?	-	-	intronic	51	0	0	59	7	11.86440678	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.627274814	0.750851741	0.835417673	0.00125	0.99875	0	0	2	2.12E-08	1	1	1	NA	NA	NA	NA
1351289	1206715176	PD9774b	4	100669262	A	C	-	-	-	-	-	-	37	0	0	52	4	7.692307692	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.40669466	0.486815964	0.835417673	0.01375	0.98625	0	0	2	0.000139698	1	1	1	NA	NA	NA	NA
1351289	1206715338	PD9774b	4	102882656	T	C	BANK1	CCDS34038.1	r.?	-	-	intronic	38	0	0	42	4	9.523809524	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.503526722	0.602724527	0.835417673	0.01	0.98875	0.00125	0	2	6.01E-05	1	1	1	NA	NA	NA	NA
1351289	1206715558	PD9774b	4	105223022	A	C	-	-	-	-	-	-	47	0	0	48	8	16.66666667	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.881171763	1.054767922	0.835417673	0.00125	0.99875	0	0	2	1.23E-10	1	1	1	NA	NA	NA	NA
1351289	1206715579	PD9774b	4	105560315	T	C	-	-	-	-	-	-	39	0	0	38	7	18.42105263	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.973926685	0.973926685	1	0.00125	0.99875	0	0	2	8.61E-10	1	1	1	NA	NA	NA	NA
1351289	1206715672	PD9774b	4	107071793	G	C	TBCK	CCDS3673.1	r.?	-	-	intronic	39	0	0	41	4	9.756097561	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.515807861	0.617425125	0.835417673	0.005	0.995	0	0	2	5.46E-05	1	1	1	NA	NA	NA	NA
1351289	1206716144	PD9774b	4	113827894	T	C	ANK2	ENST00000506722	r.?	-	-	intronic	45	0	0	47	9	19.14893617	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	1.01241011	1.01241011	1	0	1	0	0	2	2.24E-12	1	1	1	NA	NA	NA	NA
1351289	1206716262	PD9774b	4	115646768	G	C	-	-	-	-	-	-	31	0	0	47	9	19.14893617	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	1.01241011	1.01241011	1	0	0.99875	0.00125	0	2	2.24E-12	1	1	1	NA	NA	NA	NA
1351289	1206716411	PD9774b	4	117889609	G	C	-	-	-	-	-	-	35	0	0	48	6	12.5	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.660878822	0.791075941	0.835417673	0.0025	0.9975	0	0	2	1.60E-07	1	1	1	NA	NA	NA	NA
1351289	1206716601	PD9774b	4	120584723	A	C	-	-	-	-	-	-	39	0	0	39	9	23.07692308	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	1.220083979	1.220083979	1	0	0.9975	0.0025	0	2	3.62E-13	1	1	1	NA	NA	NA	NA
1351289	1206716631	PD9774b	4	120941330	T	C	-	-	-	-	-	-	32	0	0	37	4	10.81081081	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.571570873	0.684173787	0.835417673	0.00125	0.99875	0	0	2	3.62E-05	1	1	1	NA	NA	NA	NA
1351289	1206717076	PD9774b	4	126854731	G	C	-	-	-	-	-	-	36	0	0	55	9	16.36363636	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.865150458	1.035590323	0.835417673	0	1	0	0	2	1.01E-11	1	1	1	NA	NA	NA	NA
1351289	1206717295	PD9774b	4	129695646	A	C	-	-	-	-	-	-	32	0	0	45	4	8.888888889	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.469958273	0.562542892	0.835417673	0.00625	0.99375	0	0	2	7.91E-05	1	1	1	NA	NA	NA	NA
1351289	1206717448	PD9774b	4	132240925	T	C	-	-	-	-	-	-	44	0	0	45	5	11.11111111	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.587447842	0.703178614	0.835417673	0.0025	0.9975	0	0	2	3.23E-06	1	1	1	NA	NA	NA	NA
1351289	1206717873	PD9774b	4	135602558	G	C	-	-	-	-	-	-	25	0	0	65	8	12.30769231	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.650711456	0.778905542	0.835417673	0.00125	0.99875	0	0	2	1.53E-09	1	1	1	NA	NA	NA	NA
1351289	1206717926	PD9774b	4	136231224	A	C	-	-	-	-	-	-	47	0	0	54	12	22.22222222	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	1.174895684	1.174895684	1	0	1	0	0	2	6.90E-17	1	1	1	NA	NA	NA	NA
1351289	1206717942	PD9774b	4	136420976	T	C	-	-	-	-	-	-	38	0	0	47	6	12.76595745	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.674940074	0.807907344	0.835417673	0.0025	0.9975	0	0	2	1.41E-07	1	1	1	NA	NA	NA	NA
1351289	1206718484	PD9774b	4	143901301	G	C	-	-	-	-	-	-	31	0	0	42	5	11.9047619	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.629408402	0.753405658	0.835417673	0.00125	0.99875	0	0	2	2.28E-06	1	1	1	NA	NA	NA	NA
1351289	1206718576	PD9774b	4	144862662	A	C	-	-	-	-	-	-	38	0	0	45	6	13.33333333	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.70493741	0.843814337	0.835417673	0.00125	0.99875	0	0	2	1.08E-07	1	1	1	NA	NA	NA	NA
1351289	1206718997	PD9774b	4	150430006	T	C	-	-	-	-	-	-	39	0	0	52	6	11.53846154	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.61004199	0.730223946	0.835417673	0.0025	0.9975	0	0	2	2.61E-07	1	1	1	NA	NA	NA	NA
1351289	1206719056	PD9774b	4	151242327	G	C	LRBA	CCDS3773.1	r.?	-	-	intronic	39	0	0	52	11	21.15384615	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	1.118410314	1.118410314	1	0	1	0	0	2	2.44E-15	1	1	1	NA	NA	NA	NA
1351289	1206719210	PD9774b	4	153122383	G	C	-	-	-	-	-	-	29	0	0	57	5	8.771929825	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.463774612	0.555141011	0.835417673	0.00625	0.99375	0	0	2	1.05E-05	1	1	1	NA	NA	NA	NA
1351289	1206719412	PD9774b	4	156418927	A	C	-	-	-	-	-	-	24	0	0	44	4	9.090909091	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.480639143	0.575327957	0.835417673	0.00375	0.99625	0	0	2	7.23E-05	1	1	1	NA	NA	NA	NA
1351289	1206719467	PD9774b	4	156995891	T	C	-	-	-	-	-	-	31	0	0	33	9	27.27272727	1	0	0	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	1.44191743	1.44191743	1	0	0.9925	0.0075	0	2	6.76E-14	1	1	1	NA	NA	NA	NA
1351289	1206719500	PD9774b	4	157683942	G	C	PDGFC	ENST00000502773	r.1829c>g	c.?	p.?	3'UTR variant	31	0	0	55	7	12.72727273	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.672894801	0.80545914	0.835417673	0	1	0	0	2	1.28E-08	1	1	1	NA	NA	NA	NA
1351289	1206719689	PD9774b	4	160377321	T	C	-	-	-	-	-	-	30	0	0	48	9	18.75	180	0	0	214	19	8.878504673	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.991318233	0.991318233	1	0	1	0	0	2	2.75E-12	1	5.16E-18	1	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206720005	PD9774b	4	164264819	G	C	NPY5R	CCDS3804.1	r.?	-	-	upstream	30	0	0	19	6	31.57894737	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	1.669588603	1.669588603	1	0	0.995	0.005	0	2	4.01E-10	1	1	1	NA	NA	NA	NA
1351289	1206720078	PD9774b	4	165070235	G	C	Mar-01	CCDS45732.1	r.?	-	-	intronic	32	0	0	45	6	13.33333333	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.70493741	0.843814337	0.835417673	0.00125	0.99875	0	0	2	1.08E-07	1	1	1	NA	NA	NA	NA
1351289	1206720210	PD9774b	4	166389918	A	C	CPE	CCDS3810.1	r.?	-	-	intronic	21	0	0	52	8	15.38461538	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.813389319	0.973631928	0.835417673	0.00125	0.99875	0	0	2	2.42E-10	1	1	1	NA	NA	NA	NA
1351289	1206720326	PD9774b	4	168012985	T	C	SPOCK3	CCDS34095.1	r.?	-	-	intronic	42	0	0	52	7	13.46153846	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.711715654	0.851927937	0.835417673	0.00125	0.99875	0	0	2	8.58E-09	1	1	1	NA	NA	NA	NA
1351289	1206720332	PD9774b	4	168078727	T	C	SPOCK3	CCDS34095.1	r.?	-	-	intronic	23	0	0	50	8	16	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.845924892	1.012577205	0.835417673	0.00125	0.99875	0	0	2	1.74E-10	1	1	1	NA	NA	NA	NA
1351289	1206720357	PD9774b	4	168450581	G	C	-	-	-	-	-	-	47	0	0	51	10	19.60784314	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	1.036672662	1.036672662	1	0.00125	0.99875	0	0	2	1.04E-13	1	1	1	NA	NA	NA	NA
1351289	1206720607	PD9774b	4	172641413	T	C	-	-	-	-	-	-	34	0	0	54	6	11.11111111	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.587447842	0.703178614	0.835417673	0.005	0.995	0	0	2	3.29E-07	1	1	1	NA	NA	NA	NA
1351289	1206720737	PD9774b	4	174582207	T	C	-	-	-	-	-	-	47	0	0	55	9	16.36363636	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.865150458	1.035590323	0.835417673	0	0.99875	0.00125	0	2	1.01E-11	1	1	1	NA	NA	NA	NA
1351289	1206720807	PD9774b	4	175495277	A	C	-	-	-	-	-	-	32	0	0	48	9	18.75	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.991318233	0.991318233	1	0.00125	0.99875	0	0	2	2.75E-12	1	1	1	NA	NA	NA	NA
1351289	1206720881	PD9774b	4	176326187	G	C	-	-	-	-	-	-	47	0	0	54	7	12.96296296	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.685355815	0.82037505	0.835417673	0.0025	0.9975	0	0	2	1.13E-08	1	1	1	NA	NA	NA	NA
1351289	1206721017	PD9774b	4	178114856	G	C	-	-	-	-	-	-	26	0	0	26	7	26.92307692	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	1.423431309	1.423431309	1	0	0.9925	0.0075	0	2	4.73E-11	1	1	1	NA	NA	NA	NA
1351289	1206721391	PD9774b	4	182204849	T	C	-	-	-	-	-	-	21	0	0	38	8	21.05263158	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	1.113059069	1.113059069	1	0	1	0	0	2	1.67E-11	1	1	1	NA	NA	NA	NA
1351289	1206721584	PD9774b	4	184437596	G	C	-	-	-	-	-	-	42	0	0	37	6	16.21621622	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.85735631	1.026260681	0.835417673	0.00125	0.99875	0	0	2	3.18E-08	1	1	1	NA	NA	NA	NA
1351289	1206721703	PD9774b	4	185477566	G	C	-	-	-	-	-	-	30	0	0	45	10	22.22222222	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	1.174895684	1.174895684	1	0	0.9975	0.0025	0	2	2.66E-14	1	1	1	NA	NA	NA	NA
1351289	1206721786	PD9774b	4	186278318	T	C	SNX25	CCDS34116.1	r.?	-	-	intronic	45	0	0	38	6	15.78947368	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.834794302	0.999253821	0.835417673	0	0.9975	0.0025	0	2	3.76E-08	1	1	1	NA	NA	NA	NA
1351289	1206722107	PD9774b	4	189018980	T	C	TRIML2	ENST00000512729	r.?	-	-	intronic	32	0	0	45	8	17.77777778	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.939916547	0.939916547	1	0.0025	0.99625	0.00125	0	2	7.14E-11	1	1	1	NA	NA	NA	NA
1351289	1206722214	PD9774b	4	189516883	A	C	-	-	-	-	-	-	36	0	0	51	6	11.76470588	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.622003597	0.744542062	0.835417673	0.00375	0.99625	0	0	2	2.32E-07	1	1	1	NA	NA	NA	NA
1351289	1206722281	PD9774b	4	190015797	T	C	-	-	-	-	-	-	38	0	0	65	5	7.692307692	0	0	NA	0	0	NA	1.841368976	1	0	0.158631024	1	1	0.841368976	unphased	0.484075529	0.575342737	0.841368976	0.005	0.995	0	0	2	2.01E-05	1	1	1	NA	NA	NA	NA
1351289	1206725427	PD9774b	5	549667	T	C	-	-	-	-	-	-	32	0	0	66	10	15.15151515	0	0	NA	1	0	0	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	0.927950233	0.927950233	1	0	1	0	0	2	1.60E-12	1	1	1	NA	NA	NA	NA
1351289	1206725805	PD9774b	5	2034197	G	C	-	-	-	-	-	-	30	0	0	56	9	16.07142857	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	0.984290069	0.984290069	1	0	1	0	0	2	1.20E-11	1	1	1	NA	NA	NA	NA
1351289	1206725902	PD9774b	5	2148078	G	C	-	-	-	-	-	-	27	0	0	59	8	13.55932203	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	0.830436819	0.830436819	1	0.0025	0.99625	0.00125	0	2	6.90E-10	1	1	1	NA	NA	NA	NA
1351289	1206726448	PD9774b	5	7454844	A	C	ADCY2	CCDS3872.2	r.?	-	-	intronic	36	0	0	51	4	7.843137255	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	0.480350709	0.713895434	0.672858638	0.00375	0.99625	0	0	2	0.000129466	1	1	1	NA	NA	NA	NA
1351289	1206726576	PD9774b	5	9026781	A	C	-	-	-	-	-	-	37	0	0	70	14	20	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	1.224894308	1.224894308	1	0	0.99625	0.00375	0	2	9.08E-19	1	1	1	NA	NA	NA	NA
1351289	1206726600	PD9774b	5	9325506	T	C	SEMA5A	CCDS3875.1	r.?	-	-	intronic	32	0	0	55	11	20	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	1.224894308	1.224894308	1	0	0.9975	0.0025	0	2	4.77E-15	1	1	1	NA	NA	NA	NA
1351289	1206726688	PD9774b	5	10254141	G	C	CCT5	CCDS3877.1	r.?	-	-	intronic	37	0	0	50	10	20	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	1.224894308	1.224894308	1	0	0.99625	0.00375	0	2	8.36E-14	1	1	1	NA	NA	NA	NA
1351289	1206726889	PD9774b	5	13012182	T	C	-	-	-	-	-	-	35	0	0	56	6	10.71428571	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	0.656193379	0.975232155	0.672858638	0	0.99875	0.00125	0	2	4.09E-07	1	1	1	NA	NA	NA	NA
1351289	1206726908	PD9774b	5	13194679	T	C	-	-	-	-	-	-	30	0	0	60	9	15	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	0.918670731	0.918670731	1	0.00125	0.99875	0	0	2	2.29E-11	1	1	1	NA	NA	NA	NA
1351289	1206727044	PD9774b	5	15081393	T	C	-	-	-	-	-	-	22	0	0	53	8	15.09433962	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	0.924448534	0.924448534	1	0.00125	0.9975	0.00125	0	2	2.83E-10	1	1	1	NA	NA	NA	NA
1351289	1206727142	PD9774b	5	16556463	G	C	FAM134B	CCDS43304.1	r.?	-	-	intronic	21	0	0	48	10	20.83333333	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	1.275931571	1.275931571	1	0	0.99875	0.00125	0	2	5.37E-14	1	1	1	NA	NA	NA	NA
1351289	1206727292	PD9774b	5	17491514	G	C	-	-	-	-	-	-	48	0	0	42	11	26.19047619	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	1.604028261	1.604028261	1	0	0.9875	0.0125	0	2	1.81E-16	1	1	1	NA	NA	NA	NA
1351289	1206727386	PD9774b	5	17993560	G	C	-	-	-	-	-	-	51	0	0	68	15	22.05882353	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	1.350986369	1.350986369	1	0	0.99	0.01	0	2	1.06E-20	1	1	1	NA	NA	NA	NA
1351289	1206727446	PD9774b	5	18329611	A	C	-	-	-	-	-	-	36	0	0	62	13	20.96774194	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	1.284163388	1.284163388	1	0	1	0	0	2	8.08E-18	1	1	1	NA	NA	NA	NA
1351289	1206727860	PD9774b	5	21530413	G	C	-	-	-	-	-	-	57	0	0	78	14	17.94871795	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	1.099264123	1.099264123	1	0	1	0	0	2	4.63E-18	1	1	1	NA	NA	NA	NA
1351289	1206727904	PD9774b	5	21724231	T	C	-	-	-	-	-	-	37	0	0	69	12	17.39130435	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	1.065125485	1.065125485	1	0	1	0	0	2	1.65E-15	1	1	1	NA	NA	NA	NA
1351289	1206727925	PD9774b	5	22039828	T	C	CDH12	CCDS3890.1	r.?	-	-	intronic	32	0	0	67	17	25.37313433	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	1.553970391	1.553970391	1	0	0.98	0.02	0	2	2.03E-24	1	1	1	NA	NA	NA	NA
1351289	1206727960	PD9774b	5	22337232	G	C	CDH12	CCDS3890.1	r.?	-	-	intronic	34	0	0	58	9	15.51724138	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	0.950349032	0.950349032	1	0.00125	0.99875	0	0	2	1.67E-11	1	1	1	NA	NA	NA	NA
1351289	1206728244	PD9774b	5	25597501	T	C	-	-	-	-	-	-	20	0	0	40	4	10	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	0.612447154	0.910216678	0.672858638	0.00375	0.99625	0	0	2	4.95E-05	1	1	1	NA	NA	NA	NA
1351289	1206728343	PD9774b	5	26916210	T	C	CDH9	CCDS3893.1	r.?	-	-	intronic	38	0	0	65	12	18.46153846	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	1.130671669	1.130671669	1	0.00125	0.99875	0	0	2	7.70E-16	1	1	1	NA	NA	NA	NA
1351289	1206728414	PD9774b	5	27522347	G	C	-	-	-	-	-	-	46	0	0	60	7	11.66666667	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	0.71452168	1.061919458	0.672858638	0	1	0	0	2	2.39E-08	1	1	1	NA	NA	NA	NA
1351289	1206728442	PD9774b	5	27857487	A	C	-	-	-	-	-	-	32	0	0	64	9	14.0625	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	0.86125381	0.86125381	1	0.00125	0.99875	0	0	2	4.20E-11	1	1	1	NA	NA	NA	NA
1351289	1206728505	PD9774b	5	28564433	G	C	-	-	-	-	-	-	34	0	0	75	7	9.333333333	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	0.571617344	0.849535566	0.672858638	0.00125	0.99875	0	0	2	1.15E-07	1	1	1	NA	NA	NA	NA
1351289	1206728524	PD9774b	5	28702119	T	C	-	-	-	-	-	-	32	0	0	51	8	15.68627451	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	0.960701418	0.960701418	1	0.00375	0.99625	0	0	2	2.05E-10	1	1	1	NA	NA	NA	NA
1351289	1206728664	PD9774b	5	29568568	G	C	-	-	-	-	-	-	35	0	0	61	4	6.557377049	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	0.401604691	0.596863396	0.672858638	0.005	0.995	0	0	2	0.000259828	1	1	1	NA	NA	NA	NA
1351289	1206728939	PD9774b	5	32282597	G	C	MTMR12	CCDS34138.1	r.?	-	-	intronic	48	0	0	60	4	6.666666667	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	0.408298103	0.606811119	0.672858638	0.00375	0.995	0.00125	0	2	0.000243755	1	1	1	NA	NA	NA	NA
1351289	1206729039	PD9774b	5	33331379	A	C	-	-	-	-	-	-	42	0	0	62	13	20.96774194	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	1.284163388	1.284163388	1	0	0.9925	0.0075	0	2	8.08E-18	1	1	1	NA	NA	NA	NA
1351289	1206729054	PD9774b	5	33552824	G	C	ADAMTS12	ENST00000504830	r.?	-	-	intronic	29	0	0	47	14	29.78723404	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	1.824310672	1.824310672	1	0	0.95625	0.04375	0	2	1.79E-21	1	1	1	NA	NA	NA	NA
1351289	1206729391	PD9774b	5	36503407	T	C	-	-	-	-	-	-	24	0	0	58	6	10.34482759	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	0.633566021	0.94160346	0.672858638	0.00125	0.99875	0	0	2	5.06E-07	1	1	1	NA	NA	NA	NA
1351289	1206729413	PD9774b	5	36904627	A	C	NIPBL	CCDS3920.1	r.?	-	-	intronic	45	0	0	48	4	8.333333333	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	0.510372628	0.758513899	0.672858638	0.005	0.99375	0.00125	0	2	0.000102016	1	1	1	NA	NA	NA	NA
1351289	1206729463	PD9774b	5	37467375	G	C	WDR70	CCDS34147.1	r.?	-	-	intronic	39	0	0	58	5	8.620689655	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	0.527971685	0.78466955	0.672858638	0	0.99875	0.00125	0	2	1.15E-05	1	1	1	NA	NA	NA	NA
1351289	1206729674	PD9774b	5	39844416	A	C	-	-	-	-	-	-	40	0	0	68	14	20.58823529	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	1.260920611	1.260920611	1	0	1	0	0	2	5.84E-19	1	1	1	NA	NA	NA	NA
1351289	1206729821	PD9774b	5	41712058	G	C	-	-	-	-	-	-	36	0	0	52	8	15.38461538	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	0.942226391	0.942226391	1	0	1	0	0	2	2.42E-10	1	1	1	NA	NA	NA	NA
1351289	1206729883	PD9774b	5	42727313	G	C	-	-	-	-	-	-	30	0	0	53	8	15.09433962	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	0.924448534	0.924448534	1	0.00125	0.9975	0.00125	0	2	2.83E-10	1	1	1	NA	NA	NA	NA
1351289	1206729992	PD9774b	5	43922230	T	C	-	-	-	-	-	-	41	0	0	55	5	9.090909091	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	0.55677014	0.827469708	0.672858638	0.0025	0.9975	0	0	2	8.83E-06	1	1	1	NA	NA	NA	NA
1351289	1206730001	PD9774b	5	44098342	T	C	-	-	-	-	-	-	41	0	0	58	16	27.5862069	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	1.689509391	1.689509391	1	0	0.96	0.04	0	2	1.00E-23	1	1	1	NA	NA	NA	NA
1351289	1206730037	PD9774b	5	44603778	G	C	-	-	-	-	-	-	39	0	0	33	6	18.18181818	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	1.11354028	1.11354028	1	0.00125	0.9975	0.00125	0	2	1.54E-08	1	1	1	NA	NA	NA	NA
1351289	1206731373	PD9774b	5	50422530	G	C	-	-	-	-	-	-	41	0	0	57	7	12.28070175	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	0.752128084	1.117809956	0.672858638	0	0.9975	0.0025	0	2	1.66E-08	1	1	1	NA	NA	NA	NA
1351289	1206731497	PD9774b	5	51953761	T	C	-	-	-	-	-	-	39	0	0	43	5	11.62790698	0	0	NA	0	0	NA	1.09856244	1	0	0.90143756	1	1	0.09856244	unphased	0.645369226	0.645369226	1	0.0075	0.9925	0	0	2	2.57E-06	1	1	1	NA	NA	NA	NA
1351289	1206731646	PD9774b	5	53772591	G	C	-	-	-	-	-	-	24	0	0	58	5	8.620689655	0	0	NA	0	0	NA	1.74120865	1	0	0.25879135	1	1	0.74120865	unphased	0.533863927	0.720261328	0.74120865	0.0025	0.9975	0	0	2	1.15E-05	1	1	1	NA	NA	NA	NA
1351289	1206731807	PD9774b	5	55275579	T	C	IL6ST	CCDS3971.1	r.?	-	-	intronic	33	0	0	48	5	10.41666667	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.551337634	0.655395899	0.841228386	0	1	0	0	2	4.47E-06	1	1	1	NA	NA	NA	NA
1351289	1206731901	PD9774b	5	56348053	G	C	-	-	-	-	-	-	31	0	0	55	5	9.090909091	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.48116739	0.571981875	0.841228386	0.005	0.995	0	0	2	8.83E-06	1	1	1	NA	NA	NA	NA
1351289	1206731906	PD9774b	5	56376414	A	C	-	-	-	-	-	-	43	0	0	44	7	15.90909091	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.842042932	1.000968282	0.841228386	0	1	0	0	2	2.55E-09	1	1	1	NA	NA	NA	NA
1351289	1206732075	PD9774b	5	58344520	T	C	PDE4D	CCDS47213.1	r.?	-	-	intronic	39	0	0	46	8	17.39130435	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.920494137	0.920494137	1	0.0025	0.9975	0	0	2	8.61E-11	1	1	1	NA	NA	NA	NA
1351289	1206732187	PD9774b	5	60214730	A	C	ERCC8	CCDS3978.1	r.?	-	-	intronic	34	0	0	61	7	11.47540984	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.60737523	0.722009908	0.841228386	0.00125	0.99875	0	0	2	2.69E-08	1	1	1	NA	NA	NA	NA
1351289	1206732235	PD9774b	5	60789780	A	C	ZSWIM6	CCDS47215.1	r.?	-	-	intronic	35	0	0	48	4	8.333333333	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.441070107	0.524316719	0.841228386	0.01	0.99	0	0	2	0.000102016	1	1	1	NA	NA	NA	NA
1351289	1206732446	PD9774b	5	63599780	G	C	RNF180	CCDS47219.1	r.?	-	-	intronic	34	0	0	38	4	10.52631579	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.557141188	0.662294803	0.841228386	0.0025	0.9975	0	0	2	4.03E-05	1	1	1	NA	NA	NA	NA
1351289	1206732491	PD9774b	5	64372006	G	C	-	-	-	-	-	-	32	0	0	56	11	19.64285714	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	1.039665253	1.039665253	1	0.00125	0.99875	0	0	2	5.91E-15	1	1	1	NA	NA	NA	NA
1351289	1206732562	PD9774b	5	65421257	G	C	-	-	-	-	-	-	35	0	0	35	3	8.571428571	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.453672111	0.539297197	0.841228386	0.0075	0.9925	0	0	2	0.000725791	1	1	1	NA	NA	NA	NA
1351289	1206732894	PD9774b	5	71087826	T	C	-	-	-	-	-	-	34	0	0	49	4	8.163265306	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.432068677	0.513616378	0.841228386	0.005	0.995	0	0	2	0.000110643	1	1	1	NA	NA	NA	NA
1351289	1206733119	PD9774b	5	74797979	G	C	COL4A3BP	CCDS47235.1	r.?	-	-	intronic	35	0	0	40	7	17.5	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.926247226	0.926247226	1	0.00125	0.99875	0	0	2	1.26E-09	1	1	1	NA	NA	NA	NA
1351289	1206733134	PD9774b	5	75127893	A	C	-	-	-	-	-	-	38	0	0	43	8	18.60465116	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.984714658	0.984714658	1	0	0.99875	0.00125	0	2	4.85E-11	1	1	1	NA	NA	NA	NA
1351289	1206733505	PD9774b	5	79619464	G	C	SPZ1	CCDS43336.1	r.?	-	-	downstream	25	0	0	41	8	19.51219512	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	1.03274952	1.03274952	1	0	1	0	0	2	3.22E-11	1	1	1	NA	NA	NA	NA
1351289	1206733899	PD9774b	5	85457772	A	C	-	-	-	-	-	-	36	0	0	56	6	10.71428571	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.567090138	0.674121496	0.841228386	0.0025	0.9975	0	0	2	4.09E-07	1	1	1	NA	NA	NA	NA
1351289	1206734034	PD9774b	5	87398420	A	C	-	-	-	-	-	-	24	0	0	39	4	10.25641026	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.542855517	0.645312885	0.841228386	0.00125	0.99875	0	0	2	4.47E-05	1	1	1	NA	NA	NA	NA
1351289	1206734180	PD9774b	5	89835734	G	C	GPR98	ENST00000508842	r.?	-	-	intronic	27	0	0	48	5	10.41666667	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.551337634	0.655395899	0.841228386	0.00375	0.99625	0	0	2	4.47E-06	1	1	1	NA	NA	NA	NA
1351289	1206734196	PD9774b	5	90051753	G	C	GPR98	CCDS47246.1	r.?	-	-	intronic	40	0	0	39	7	17.94871795	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.949997154	0.949997154	1	0	1	0	0	2	1.04E-09	1	1	1	NA	NA	NA	NA
1351289	1206734410	PD9774b	5	93769277	A	C	C5orf36	ENST00000513200	r.?	-	-	intronic	35	0	0	44	4	9.090909091	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.48116739	0.571981875	0.841228386	0.0025	0.9975	0	0	2	7.23E-05	1	1	1	NA	NA	NA	NA
1351289	1206734882	PD9774b	5	100388680	G	C	-	-	-	-	-	-	29	0	0	51	5	9.803921569	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.518906009	0.616843199	0.841228386	0.00375	0.99625	0	0	2	6.06E-06	1	1	1	NA	NA	NA	NA
1351289	1206734981	PD9774b	5	101418940	G	C	-	-	-	-	-	-	39	0	0	45	10	22.22222222	1	0	0	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	1.176186953	1.176186953	1	0	0.9975	0.0025	0	2	2.66E-14	1	1	1	NA	NA	NA	NA
1351289	1206735018	PD9774b	5	101841571	G	C	-	-	-	-	-	-	42	0	0	54	9	16.66666667	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.882140215	1.048633438	0.841228386	0.0025	0.9975	0	0	2	8.48E-12	1	1	1	NA	NA	NA	NA
1351289	1206735252	PD9774b	5	105006062	T	C	-	-	-	-	-	-	45	0	0	65	11	16.92307692	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.895711603	1.06476626	0.841228386	0	0.99875	0.00125	0	2	3.41E-14	1	1	1	NA	NA	NA	NA
1351289	1206735286	PD9774b	5	105546703	G	C	-	-	-	-	-	-	33	0	0	45	8	17.77777778	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.940949563	0.940949563	1	0	1	0	0	2	7.14E-11	1	1	1	NA	NA	NA	NA
1351289	1206735455	PD9774b	5	107368976	T	C	FBXL17	ENST00000359660	r.?	-	-	intronic	37	0	0	59	15	25.42372881	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	1.345637616	1.345637616	1	0	0.9925	0.0075	0	2	9.90E-22	1	1	1	NA	NA	NA	NA
1351289	1206735580	PD9774b	5	108817382	T	C	-	-	-	-	-	-	41	0	0	53	9	16.98113208	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.89878437	1.068418975	0.841228386	0.00125	0.99625	0.0025	0	2	7.10E-12	1	1	1	NA	NA	NA	NA
1351289	1206735637	PD9774b	5	109995127	T	C	TMEM232	CCDS47253.1	r.?	-	-	intronic	38	0	0	61	10	16.39344262	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.8676789	1.031442726	0.841228386	0	1	0	0	2	6.98E-13	1	1	1	NA	NA	NA	NA
1351289	1206735774	PD9774b	5	111494173	T	C	EPB41L4A	CCDS43350.1	r.?	-	-	downstream	29	0	0	45	4	8.888888889	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.470474781	0.559271167	0.841228386	0.01	0.99	0	0	2	7.91E-05	1	1	1	NA	NA	NA	NA
1351289	1206736140	PD9774b	5	117070289	G	C	-	-	-	-	-	-	38	0	0	55	11	20	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	1.058568258	1.058568258	1	0	1	0	0	2	4.77E-15	1	1	1	NA	NA	NA	NA
1351289	1206736348	PD9774b	5	120198731	A	C	-	-	-	-	-	-	32	0	0	51	6	11.76470588	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.622687211	0.740211839	0.841228386	0.00375	0.99625	0	0	2	2.32E-07	1	1	1	NA	NA	NA	NA
1351289	1206736788	PD9774b	5	126155674	T	C	LMNB1	CCDS4140.1	r.?	-	-	intronic	24	0	0	36	7	19.44444444	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	1.029163584	1.029163584	1	0.00125	0.99875	0	0	2	5.74E-10	1	1	1	NA	NA	NA	NA
1351289	1206736930	PD9774b	5	128449478	A	C	ISOC1	CCDS43357.1	r.1697a>c	c.?	p.?	3'UTR variant	33	0	0	50	9	18	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.952711432	0.952711432	1	0.00125	0.99875	0	0	2	4.07E-12	1	1	1	NA	NA	NA	NA
1351289	1206737015	PD9774b	5	130067418	T	C	-	-	-	-	-	-	27	0	0	50	7	14	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.740997781	0.880852088	0.841228386	0.0025	0.9975	0	0	2	6.46E-09	1	1	1	NA	NA	NA	NA
1351289	1206737099	PD9774b	5	131071652	G	C	FNIP1	CCDS34226.1	r.?	-	-	intronic	36	0	0	39	6	15.38461538	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.814283275	0.967969328	0.841228386	0	0.99875	0.00125	0	2	4.43E-08	1	1	1	NA	NA	NA	NA
1351289	1206737185	PD9774b	5	132394678	G	C	HSPA4	CCDS4166.1	r.?	-	-	intronic	28	0	0	38	6	15.78947368	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.835711783	0.993442205	0.841228386	0	0.99875	0.00125	0	2	3.76E-08	1	1	1	NA	NA	NA	NA
1351289	1206737416	PD9774b	5	136521522	G	C	SPOCK1	CCDS4191.1	r.?	-	-	intronic	28	0	0	52	7	13.46153846	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.712497866	0.846973162	0.841228386	0.00125	0.9975	0.00125	0	2	8.58E-09	1	1	1	NA	NA	NA	NA
1351289	1206737479	PD9774b	5	137462057	A	C	NME5	CCDS4197.1	r.?	-	-	intronic	31	0	0	36	3	8.333333333	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.441070107	0.524316719	0.841228386	0.0025	0.9975	0	0	2	0.000788827	1	1	1	NA	NA	NA	NA
1351289	1206737989	PD9774b	5	144840227	G	C	-	-	-	-	-	-	35	0	0	58	14	24.13793103	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	1.27758238	1.27758238	1	0	0.99625	0.00375	0	2	5.04E-20	1	1	1	NA	NA	NA	NA
1351289	1206738068	PD9774b	5	145935532	T	C	-	-	-	-	-	-	32	0	0	49	11	22.44897959	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	1.188188861	1.188188861	1	0	0.99875	0.00125	0	2	1.19E-15	1	1	1	NA	NA	NA	NA
1351289	1206738090	PD9774b	5	146167642	A	C	PPP2R2B	CCDS4284.1	r.?	-	-	intronic	21	0	0	57	6	10.52631579	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.557141188	0.662294803	0.841228386	0.00375	0.99625	0	0	2	4.56E-07	1	1	1	NA	NA	NA	NA
1351289	1206738116	PD9774b	5	146425732	T	C	PPP2R2B	CCDS4284.1	r.?	-	-	intronic	34	0	0	58	9	15.51724138	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.821302959	0.976313891	0.841228386	0.00125	0.99875	0	0	2	1.67E-11	1	1	1	NA	NA	NA	NA
1351289	1206738160	PD9774b	5	147167176	T	C	JAKMIP2	CCDS4285.1	r.?	-	-	upstream	31	0	0	48	5	10.41666667	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.551337634	0.655395899	0.841228386	0.00375	0.99625	0	0	2	4.47E-06	1	1	1	NA	NA	NA	NA
1351289	1206738280	PD9774b	5	148934424	G	C	CSNK1A1	CCDS47303.1	r.?	-	-	upstream	24	0	0	44	6	13.63636364	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.721751085	0.857972813	0.841228386	0.00125	0.9975	0.00125	0	2	9.37E-08	1	1	1	NA	NA	NA	NA
1351289	1206738351	PD9774b	5	149946041	G	C	-	-	-	-	-	-	20	0	0	33	6	18.18181818	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.96233478	0.96233478	1	0	0.9975	0.0025	0	2	1.54E-08	1	1	1	NA	NA	NA	NA
1351289	1206738435	PD9774b	5	151562096	T	C	-	-	-	-	-	-	31	0	0	46	7	15.2173913	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.80543237	0.957447922	0.841228386	0.00125	0.9975	0.00125	0	2	3.53E-09	1	1	1	NA	NA	NA	NA
1351289	1206738887	PD9774b	5	158025026	T	C	-	-	-	-	-	-	32	0	0	43	6	13.95348837	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.738535994	0.877925669	0.841228386	0.00125	0.99875	0	0	2	8.13E-08	1	1	1	NA	NA	NA	NA
1351289	1206739398	PD9774b	5	165310749	T	C	-	-	-	-	-	-	30	0	0	44	10	22.72727273	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	1.202918475	1.202918475	1	0	0.99625	0.00375	0	2	2.08E-14	1	1	1	NA	NA	NA	NA
1351289	1206739645	PD9774b	5	168995435	G	C	-	-	-	-	-	-	26	0	0	56	8	14.28571429	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.756120184	0.898828661	0.841228386	0.00375	0.99625	0	0	2	4.48E-10	1	1	1	NA	NA	NA	NA
1351289	1206739669	PD9774b	5	169327468	G	C	DOCK2	CCDS4371.1	r.?	-	-	intronic	31	0	0	49	5	10.20408163	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.540085846	0.642020472	0.841228386	0.00375	0.99625	0	0	2	4.96E-06	1	1	1	NA	NA	NA	NA
1351289	1206739686	PD9774b	5	169590333	G	C	-	-	-	-	-	-	30	0	0	43	7	16.27906977	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.861625326	1.024246614	0.841228386	0.00125	0.9975	0.00125	0	2	2.15E-09	1	1	1	NA	NA	NA	NA
1351289	1206739714	PD9774b	5	169832609	G	C	KCNIP1	CCDS34285.1	r.?	-	-	intronic	35	0	0	53	4	7.547169811	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.39945972	0.474852878	0.841228386	0.00875	0.99125	0	0	2	0.000150502	1	1	1	NA	NA	NA	NA
1351289	1206740605	PD9774b	5	180171210	G	C	OR2Y1	CCDS34323.1	r.?	-	-	upstream	40	0	0	40	9	22.5	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	1.19088929	1.19088929	1	0.0025	0.99625	0.00125	0	2	4.64E-13	1	1	1	NA	NA	NA	NA
1351289	1206741054	PD9774b	6	3334385	T	C	SLC22A23	CCDS47363.1	r.?	-	-	intronic	32	0	0	54	8	14.81481481	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.807646356	0.807646356	1	0.00125	0.99875	0	0	2	3.31E-10	1	1	1	NA	NA	NA	NA
1351289	1206741122	PD9774b	6	4382472	G	C	-	-	-	-	-	-	29	0	0	45	4	8.888888889	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.484587814	0.484587814	1	0.01	0.99	0	0	2	7.91E-05	1	1	1	NA	NA	NA	NA
1351289	1206741549	PD9774b	6	9573714	G	C	-	-	-	-	-	-	41	0	0	59	10	16.94915254	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.924002187	0.924002187	1	0.00375	0.99625	0	0	2	4.91E-13	1	1	1	NA	NA	NA	NA
1351289	1206741811	PD9774b	6	12811372	T	C	PHACTR1	ENST00000379350	r.?	-	-	intronic	39	0	0	37	7	18.91891892	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.031386225	1.031386225	1	0.005	0.995	0	0	2	7.05E-10	1	1	1	NA	NA	NA	NA
1351289	1206742290	PD9774b	6	17996356	G	C	-	-	-	-	-	-	30	0	0	55	9	16.36363636	2	0	0	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.892082111	0.892082111	1	0.0025	0.9975	0	0	2	1.01E-11	1	1	1	NA	NA	NA	NA
1351289	1206742555	PD9774b	6	20861056	A	C	CDKAL1	CCDS4546.1	r.?	-	-	intronic	27	0	0	63	6	9.523809524	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.519201229	0.519201229	1	0.01	0.99	0	0	2	8.32E-07	1	1	1	NA	NA	NA	NA
1351289	1206742700	PD9774b	6	22595174	G	C	-	-	-	-	-	-	39	0	0	53	12	22.64150943	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.23432745	1.23432745	1	0	1	0	0	2	5.39E-17	1	1	1	NA	NA	NA	NA
1351289	1206742747	PD9774b	6	23221610	T	C	-	-	-	-	-	-	33	0	0	44	4	9.090909091	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.495601173	0.495601173	1	0.0075	0.9925	0	0	2	7.23E-05	1	1	1	NA	NA	NA	NA
1351289	1206743521	PD9774b	6	30242622	T	C	-	-	-	-	-	-	42	0	0	41	9	21.95121951	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.196695515	1.196695515	1	0	0.99875	0.00125	0	2	5.92E-13	1	1	1	NA	NA	NA	NA
1351289	1206743576	PD9774b	6	30855285	G	C	DDR1	CCDS34385.1	r.?	-	-	intronic	31	0	0	48	9	18.75	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.022177419	1.022177419	1	0	1	0	0	2	2.75E-12	1	1	1	NA	NA	NA	NA
1351289	1206744048	PD9774b	6	34158529	G	C	-	-	-	-	-	-	29	0	0	48	6	12.5	2	0	0	0	0	NA	0.816187611	0	0	0.183812389	1	0	0.816187611	unphased	0.658475064	0.806769247	0.816187611	0.0025	0.9975	0	0	2	1.60E-07	1	1	1	NA	NA	NA	NA
1351289	1206744386	PD9774b	6	38914236	G	C	DNAH8	CCDS4838.1	r.?	-	-	intronic	29	0	0	50	7	14	0	0	NA	0	0	NA	0.816187611	0	0	0.183812389	1	0	0.816187611	unphased	0.737492072	0.903581556	0.816187611	0.00125	0.99875	0	0	2	6.46E-09	1	1	1	NA	NA	NA	NA
1351289	1206744488	PD9774b	6	40607380	A	C	-	-	-	-	-	-	31	0	0	41	8	19.51219512	0	0	NA	0	0	NA	0.816187611	0	0	0.183812389	1	0	0.816187611	unphased	1.027863515	1.027863515	1	0	0.9975	0.0025	0	2	3.22E-11	1	1	1	NA	NA	NA	NA
1351289	1206744717	PD9774b	6	43596674	G	C	GTPBP2	CCDS4903.1	r.?	-	-	intronic	29	0	0	26	3	11.53846154	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.513647643	0.513647643	1	0.00125	0.99875	0	0	2	0.000298167	1	1	1	NA	NA	NA	NA
1351289	1206745264	PD9774b	6	51545337	G	C	PKHD1	CCDS4935.1	r.?	-	-	intronic	31	0	0	63	6	9.523809524	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.423963134	0.423963134	1	0.03125	0.96875	0	0	2	8.32E-07	1	1	1	NA	NA	NA	NA
1351289	1206745322	PD9774b	6	52285774	T	C	EFHC1	CCDS4942.1	r.?	-	-	intronic	25	0	0	49	6	12.24489796	0	0	NA	0	0	NA	1.592547364	1	0	0.407452636	1	1	0.592547364	unphased	0.740101257	1.2490162	0.592547364	0	0.99875	0.00125	0	2	1.82E-07	1	1	1	NA	NA	NA	NA
1351289	1206745455	PD9774b	6	53640067	A	C	-	-	-	-	-	-	34	0	0	52	4	7.692307692	0	0	NA	0	0	NA	1.592547364	1	0	0.407452636	1	1	0.592547364	unphased	0.464935405	0.784638382	0.592547364	0.00125	0.99875	0	0	2	0.000139698	1	1	1	NA	NA	NA	NA
1351289	1206745607	PD9774b	6	55540004	A	C	-	-	-	-	-	-	44	1	2.272727273	42	5	11.9047619	0	0	NA	0	0	NA	1.592547364	1	0	0.407452636	1	1	0.592547364	unphased	0.719542889	1.214321306	0.592547364	0	0.9975	0.0025	0	2	2.28E-06	0.197923942	1	1	NA	NA	NA	NA
1351289	1206746256	PD9774b	6	57575824	A	C	-	-	-	-	-	-	86	0	0	143	10	6.993006993	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.451161741	0.451161741	1	0.06	0.94	0	0	2	3.81E-09	1	1	1	NA	NA	NA	NA
1351289	1206746816	PD9774b	6	63701802	T	C	-	-	-	-	-	-	42	0	0	59	9	15.25423729	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.984144341	0.984144341	1	0.00125	0.99875	0	0	2	1.96E-11	1	1	1	NA	NA	NA	NA
1351289	1206747012	PD9774b	6	65802746	T	C	EYS	CCDS47445.1	r.?	-	-	intronic	32	0	0	50	7	14	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.903225806	0.903225806	1	0.00375	0.99625	0	0	2	6.46E-09	1	1	1	NA	NA	NA	NA
1351289	1206747030	PD9774b	6	66049765	G	C	EYS	CCDS47445.1	r.?	-	-	intronic	28	0	0	76	10	13.15789474	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.848896435	0.848896435	1	0.0025	0.9975	0	0	2	6.90E-12	1	1	1	NA	NA	NA	NA
1351289	1206747051	PD9774b	6	66369684	T	C	EYS	CCDS47446.1	r.?	-	-	intronic	39	0	0	61	9	14.75409836	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.951877314	0.951877314	1	0	1	0	0	2	2.68E-11	1	1	1	NA	NA	NA	NA
1351289	1206747177	PD9774b	6	67620601	G	C	-	-	-	-	-	-	42	0	0	60	9	15	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.967741935	0.967741935	1	0	1	0	0	2	2.29E-11	1	1	1	NA	NA	NA	NA
1351289	1206747187	PD9774b	6	67693058	T	C	-	-	-	-	-	-	47	0	0	70	6	8.571428571	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.552995392	0.552995392	1	0.0125	0.9875	0	0	2	1.56E-06	1	1	1	NA	NA	NA	NA
1351289	1206747453	PD9774b	6	70317007	G	C	-	-	-	-	-	-	24	0	0	41	7	17.07317073	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.101494886	1.101494886	1	0.00125	0.99875	0	0	2	1.51E-09	1	1	1	NA	NA	NA	NA
1351289	1206747541	PD9774b	6	71370789	G	C	-	-	-	-	-	-	31	0	0	65	11	16.92307692	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.091811414	1.091811414	1	0.0025	0.9975	0	0	2	3.41E-14	1	1	1	NA	NA	NA	NA
1351289	1206747870	PD9774b	6	74809246	G	C	-	-	-	-	-	-	8	0	0	16	3	18.75	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.209677419	1.209677419	1	0	1	0	0	2	6.67E-05	1	1	1	NA	NA	NA	NA
1351289	1206747880	PD9774b	6	74880582	T	C	-	-	-	-	-	-	31	0	0	45	9	20	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.290322581	1.290322581	1	0	0.9975	0.0025	0	2	1.47E-12	1	1	1	NA	NA	NA	NA
1351289	1206748022	PD9774b	6	76520121	G	C	MYO6	CCDS34487.1	r.?	-	-	intronic	29	0	0	64	4	6.25	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.403225806	0.403225806	1	0.015	0.985	0	0	2	0.000312605	1	1	1	NA	NA	NA	NA
1351289	1206748326	PD9774b	6	80181023	A	C	-	-	-	-	-	-	29	0	0	62	7	11.29032258	0	0	NA	0	0	NA	1.628865241	1	0	0.371134759	1	1	0.628865241	unphased	0.686505597	1.091657722	0.628865241	0	0.99625	0.00375	0	2	3.02E-08	1	1	1	NA	NA	NA	NA
1351289	1206748327	PD9774b	6	80181150	A	C	-	-	-	-	-	-	31	0	0	44	6	13.63636364	0	0	NA	0	0	NA	1.628865241	1	0	0.371134759	1	1	0.628865241	unphased	0.829156111	0.829156111	1	0.00375	0.99625	0	0	2	9.37E-08	1	1	1	NA	NA	NA	NA
1351289	1206748645	PD9774b	6	83507350	T	C	-	-	-	-	-	-	41	0	0	54	7	12.96296296	0	0	NA	0	0	NA	1.628865241	1	0	0.371134759	1	1	0.628865241	unphased	0.78821013	0.78821013	1	0.00625	0.99375	0	0	2	1.13E-08	1	1	1	NA	NA	NA	NA
1351289	1206748654	PD9774b	6	83570746	T	C	-	-	-	-	-	-	35	0	0	39	5	12.82051282	0	0	NA	0	0	NA	1.628865241	1	0	0.371134759	1	1	0.628865241	unphased	0.77954848	0.77954848	1	0.0025	0.9975	0	0	2	1.56E-06	1	1	1	NA	NA	NA	NA
1351289	1206748743	PD9774b	6	85251356	G	C	-	-	-	-	-	-	32	0	0	45	5	11.11111111	0	0	NA	0	0	NA	1.628865241	1	0	0.371134759	1	1	0.628865241	unphased	0.675608683	1.074329822	0.628865241	0	1	0	0	2	3.23E-06	1	1	1	NA	NA	NA	NA
1351289	1206748751	PD9774b	6	85342651	G	C	-	-	-	-	-	-	40	0	0	58	6	10.34482759	0	0	NA	0	0	NA	1.628865241	1	0	0.371134759	1	1	0.628865241	unphased	0.62901498	1.00023811	0.628865241	0.00125	0.9975	0.00125	0	2	5.06E-07	1	1	1	NA	NA	NA	NA
1351289	1206749017	PD9774b	6	89177676	T	C	-	-	-	-	-	-	41	0	0	58	5	8.620689655	0	0	NA	0	0	NA	1.628865241	1	0	0.371134759	1	1	0.628865241	unphased	0.52417915	0.833531758	0.628865241	0.00375	0.99625	0	0	2	1.15E-05	1	1	1	NA	NA	NA	NA
1351289	1206749039	PD9774b	6	89521847	G	C	RNGTT	CCDS5017.1	r.?	-	-	intronic	35	0	0	51	4	7.843137255	0	0	NA	0	0	NA	1.628865241	1	0	0.371134759	1	1	0.628865241	unphased	0.476900247	0.758350462	0.628865241	0.00625	0.99375	0	0	2	0.000129466	1	1	1	NA	NA	NA	NA
1351289	1206749314	PD9774b	6	93125957	G	C	-	-	-	-	-	-	26	0	0	49	8	16.32653061	0	0	NA	0	0	NA	1.628865241	1	0	0.371134759	1	1	0.628865241	unphased	0.992731126	0.992731126	1	0	0.99875	0.00125	0	2	1.47E-10	1	1	1	NA	NA	NA	NA
1351289	1206749351	PD9774b	6	93560448	T	C	-	-	-	-	-	-	24	0	0	42	5	11.9047619	186	0	0	154	7	4.545454545	1.628865241	1	0	0.371134759	1	1	0.628865241	unphased	0.723866446	1.151067666	0.628865241	0	0.99875	0.00125	0	2	2.28E-06	1	1.46E-05	1	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206749358	PD9774b	6	93698563	G	C	-	-	-	-	-	-	29	0	0	49	7	14.28571429	0	0	NA	0	0	NA	1.628865241	1	0	0.371134759	1	1	0.628865241	unphased	0.868639735	0.868639735	1	0.00125	0.99875	0	0	2	5.58E-09	1	1	1	NA	NA	NA	NA
1351289	1206749525	PD9774b	6	96131797	G	C	-	-	-	-	-	-	31	0	0	55	5	9.090909091	0	0	NA	0	0	NA	1.628865241	1	0	0.371134759	1	1	0.628865241	unphased	0.55277074	0.878997127	0.628865241	0	1	0	0	2	8.83E-06	1	1	1	NA	NA	NA	NA
1351289	1206749576	PD9774b	6	97037634	T	C	FHL5	CCDS5035.1	r.?	-	-	intronic	42	0	0	53	5	9.433962264	0	0	NA	0	0	NA	1.628865241	1	0	0.371134759	1	1	0.628865241	unphased	0.573630014	0.91216683	0.628865241	0.00125	0.99625	0.0025	0	2	7.34E-06	1	1	1	NA	NA	NA	NA
1351289	1206749716	PD9774b	6	98895079	G	C	-	-	-	-	-	-	37	0	0	51	6	11.76470588	0	0	NA	0	0	NA	1.628865241	1	0	0.371134759	1	1	0.628865241	unphased	0.71535037	1.137525694	0.628865241	0.00125	0.99875	0	0	2	2.32E-07	1	1	1	NA	NA	NA	NA
1351289	1206749930	PD9774b	6	101866769	G	C	GRIK2	CCDS5049.1	r.?	-	-	intronic	33	0	0	66	4	6.060606061	0	0	NA	0	0	NA	1.628865241	1	0	0.371134759	1	1	0.628865241	unphased	0.368513827	0.585998085	0.628865241	0.0075	0.9925	0	0	2	0.000351793	1	1	1	NA	NA	NA	NA
1351289	1206750242	PD9774b	6	105612082	T	C	POPDC3	CCDS5052.1	r.?	-	-	intronic	30	0	0	65	7	10.76923077	0	0	NA	0	0	NA	1.628865241	1	0	0.371134759	1	1	0.628865241	unphased	0.654820723	1.04127352	0.628865241	0.00125	0.99875	0	0	2	4.22E-08	1	1	1	NA	NA	NA	NA
1351289	1206750265	PD9774b	6	106099248	G	C	-	-	-	-	-	-	33	0	0	61	5	8.196721311	0	0	NA	0	0	NA	1.628865241	1	0	0.371134759	1	1	0.628865241	unphased	0.498399848	0.792538393	0.628865241	0.00125	0.99875	0	0	2	1.47E-05	1	1	1	NA	NA	NA	NA
1351289	1206750362	PD9774b	6	107252473	G	C	-	-	-	-	-	-	38	0	0	64	4	6.25	0	0	NA	0	0	NA	1.628865241	1	0	0.371134759	1	1	0.628865241	unphased	0.380029884	0.604310525	0.628865241	0.00125	0.99875	0	0	2	0.000312605	1	1	1	NA	NA	NA	NA
1351289	1206750422	PD9774b	6	107895780	G	C	SOBP	CCDS43488.1	r.?	-	-	intronic	32	0	0	46	4	8.695652174	0	0	NA	0	0	NA	1.628865241	1	0	0.371134759	1	1	0.628865241	unphased	0.52873723	0.840779861	0.628865241	0	0.99875	0.00125	0	2	8.62E-05	1	1	1	NA	NA	NA	NA
1351289	1206750727	PD9774b	6	111665313	G	C	REV3L	CCDS5091.2	r.?	-	-	intronic	42	0	0	59	7	11.86440678	0	0	NA	0	0	NA	1.628865241	1	0	0.371134759	1	1	0.628865241	unphased	0.721412661	1.147165742	0.628865241	0	0.9975	0.0025	0	2	2.12E-08	1	1	1	NA	NA	NA	NA
1351289	1206750810	PD9774b	6	112835552	G	C	-	-	-	-	-	-	40	0	0	59	6	10.16949153	0	0	NA	0	0	NA	1.628865241	1	0	0.371134759	1	1	0.628865241	unphased	0.61835371	0.983284922	0.628865241	0	1	0	0	2	5.61E-07	1	1	1	NA	NA	NA	NA
1351289	1206750926	PD9774b	6	114190456	T	C	-	-	-	-	-	-	34	0	0	56	9	16.07142857	0	0	NA	0	0	NA	1.628865241	1	0	0.371134759	1	1	0.628865241	unphased	0.977219702	0.977219702	1	0	0.99875	0.00125	0	2	1.20E-11	1	1	1	NA	NA	NA	NA
1351289	1206750979	PD9774b	6	114728115	T	C	-	-	-	-	-	-	38	0	0	62	7	11.29032258	0	0	NA	0	0	NA	1.628865241	1	0	0.371134759	1	1	0.628865241	unphased	0.686505597	1.091657722	0.628865241	0	1	0	0	2	3.02E-08	1	1	1	NA	NA	NA	NA
1351289	1206751147	PD9774b	6	116841369	T	C	FAM26E	CCDS5108.1	r.5198u>c	c.?	p.?	3'UTR variant	35	0	0	62	5	8.064516129	0	0	NA	0	0	NA	1.628865241	1	0	0.371134759	1	1	0.628865241	unphased	0.490361141	0.779755516	0.628865241	0.00375	0.99625	0	0	2	1.60E-05	1	1	1	NA	NA	NA	NA
1351289	1206751264	PD9774b	6	118360828	T	C	SLC35F1	CCDS34524.1	r.?	-	-	intronic	28	0	0	63	9	14.28571429	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.921658986	0.921658986	1	0	1	0	0	2	3.62E-11	1	1	1	NA	NA	NA	NA
1351289	1206751310	PD9774b	6	118868880	T	C	C6orf204	CCDS43498.1	r.?	-	-	intronic	26	0	0	58	13	22.4137931	125	1	0.8	139	16	11.51079137	2	1	1	1	NA	NA	NA	unphased	1.446051168	1.446051168	1	0	0.9925	0.0075	0	2	3.12E-18	1	3.23E-17	0.465577058	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206751311	PD9774b	6	118868894	A	C	C6orf204	CCDS43498.1	r.?	-	-	intronic	31	0	0	63	13	20.63492063	130	0	0	141	15	10.63829787	2	1	1	1	NA	NA	NA	unphased	1.331285202	1.331285202	1	0	0.99625	0.00375	0	2	1.01E-17	1	1.03E-15	1	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206751731	PD9774b	6	123832069	G	C	TRDN	ENST00000334268	r.?	-	-	intronic	37	0	0	55	4	7.272727273	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.469208211	0.469208211	1	0.0125	0.9875	0	0	2	0.000173903	1	1	1	NA	NA	NA	NA
1351289	1206751741	PD9774b	6	123971019	T	C	-	-	-	-	-	-	40	0	0	65	5	7.692307692	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.496277916	0.496277916	1	0.0075	0.9925	0	0	2	2.01E-05	1	1	1	NA	NA	NA	NA
1351289	1206751845	PD9774b	6	125206726	G	C	-	-	-	-	-	-	34	0	0	69	4	5.797101449	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.374006545	0.374006545	1	0.02875	0.97125	0	0	2	0.000416985	1	1	1	NA	NA	NA	NA
1351289	1206751868	PD9774b	6	125722093	A	C	-	-	-	-	-	-	27	0	0	60	4	6.666666667	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.430107527	0.430107527	1	0.00625	0.99375	0	0	2	0.000243755	1	1	1	NA	NA	NA	NA
1351289	1206751896	PD9774b	6	126088032	T	C	-	-	-	-	-	-	45	0	0	68	5	7.352941176	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.474383302	0.474383302	1	0.015	0.985	0	0	2	2.51E-05	1	1	1	NA	NA	NA	NA
1351289	1206752253	PD9774b	6	130857693	A	C	-	-	-	-	-	-	41	0	0	46	9	19.56521739	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.26227209	1.26227209	1	0	0.99625	0.00375	0	2	1.82E-12	1	1	1	NA	NA	NA	NA
1351289	1206752403	PD9774b	6	132802913	G	C	STX7	CCDS5153.1	r.?	-	-	intronic	28	0	0	60	5	8.333333333	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.537634409	0.537634409	1	0.005	0.995	0	0	2	1.36E-05	1	1	1	NA	NA	NA	NA
1351289	1206752518	PD9774b	6	134222205	G	C	-	-	-	-	-	-	27	0	0	58	6	10.34482759	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.667408231	0.667408231	1	0.0075	0.9925	0	0	2	5.06E-07	1	1	1	NA	NA	NA	NA
1351289	1206752534	PD9774b	6	134297054	T	C	TBPL1	CCDS5168.1	r.?	-	-	intronic	31	0	0	59	8	13.55932203	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.87479497	0.87479497	1	0	1	0	0	2	6.90E-10	1	1	1	NA	NA	NA	NA
1351289	1206752703	PD9774b	6	136214938	A	C	PDE7B	CCDS5175.1	r.?	-	-	intronic	32	0	0	60	14	23.33333333	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.505376344	1.505376344	1	0	0.9925	0.0075	0	2	8.54E-20	1	1	1	NA	NA	NA	NA
1351289	1206752945	PD9774b	6	139251322	G	C	REPS1	CCDS47488.1	r.?	-	-	intronic	35	0	0	50	8	16	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.032258065	1.032258065	1	0	0.99875	0.00125	0	2	1.74E-10	1	1	1	NA	NA	NA	NA
1351289	1206752986	PD9774b	6	139619322	G	C	-	-	-	-	-	-	34	0	0	63	7	11.11111111	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.716845878	0.716845878	1	0.00375	0.99625	0	0	2	3.38E-08	1	1	1	NA	NA	NA	NA
1351289	1206752994	PD9774b	6	139657913	G	C	-	-	-	-	-	-	29	0	0	57	10	17.54385965	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.131861913	1.131861913	1	0	1	0	0	2	3.40E-13	1	1	1	NA	NA	NA	NA
1351289	1206753096	PD9774b	6	141182128	G	C	-	-	-	-	-	-	38	0	0	58	6	10.34482759	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.667408231	0.667408231	1	0.00125	0.99875	0	0	2	5.06E-07	1	1	1	NA	NA	NA	NA
1351289	1206753293	PD9774b	6	143962047	G	C	PHACTR2	CCDS47492.1	r.?	-	-	intronic	39	0	0	47	4	8.510638298	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.549073439	0.549073439	1	0.00375	0.99625	0	0	2	9.39E-05	1	1	1	NA	NA	NA	NA
1351289	1206753543	PD9774b	6	148401275	G	C	-	-	-	-	-	-	43	0	0	54	6	11.11111111	0	0	NA	0	0	NA	0.864122853	0	0	0.135877147	1	0	0.864122853	unphased	0.590637306	0.683510804	0.864122853	0.00375	0.99625	0	0	2	3.29E-07	1	1	1	NA	NA	NA	NA
1351289	1206753657	PD9774b	6	149413624	G	C	-	-	-	-	-	-	33	0	0	43	5	11.62790698	0	0	NA	0	0	NA	0.864122853	0	0	0.135877147	1	0	0.864122853	unphased	0.618108809	0.715302004	0.864122853	0.00375	0.99625	0	0	2	2.57E-06	1	1	1	NA	NA	NA	NA
1351289	1206753801	PD9774b	6	150926579	G	C	PLEKHG1	CCDS34552.1	r.?	-	-	intronic	27	0	0	63	4	6.349206349	0	0	NA	0	0	NA	0.864122853	0	0	0.135877147	1	0	0.864122853	unphased	0.337507032	0.337507032	1	0.045	0.955	0	0	2	0.000294233	1	1	1	NA	NA	NA	NA
1351289	1206753918	PD9774b	6	152028261	T	C	ESR1	CCDS5234.1	r.?	-	-	intronic	40	0	0	53	10	18.86792453	0	0	NA	0	0	NA	0.864122853	0	0	0.135877147	1	0	0.864122853	unphased	1.002969011	1.002969011	1	0.00125	0.99875	0	0	2	1.57E-13	1	1	1	NA	NA	NA	NA
1351289	1206754318	PD9774b	6	157211259	G	C	ARID1B	CCDS5251.1	r.?	-	-	intronic	41	0	0	41	11	26.82926829	0	0	NA	0	0	NA	0.864122853	0	0	0.135877147	1	0	0.864122853	unphased	1.426173008	1.426173008	1	0	0.99375	0.00625	0	2	1.34E-16	1	1	1	NA	NA	NA	NA
1351289	1206754630	PD9774b	6	160487228	T	C	IGF2R	CCDS5273.1	r.?	-	-	intronic	40	0	0	47	4	8.510638298	0	0	NA	0	0	NA	0.864122853	0	0	0.135877147	1	0	0.864122853	unphased	0.452403043	0.52354019	0.864122853	0.0075	0.9925	0	0	2	9.39E-05	1	1	1	NA	NA	NA	NA
1351289	1206754777	PD9774b	6	162595981	G	C	PARK2	CCDS5281.1	r.?	-	-	intronic	36	0	0	52	4	7.692307692	0	0	NA	0	0	NA	0.864122853	0	0	0.135877147	1	0	0.864122853	unphased	0.40890275	0.473199788	0.864122853	0.00625	0.99375	0	0	2	0.000139698	1	1	1	NA	NA	NA	NA
1351289	1206754790	PD9774b	6	162905764	G	C	PARK2	CCDS5281.1	r.?	-	-	intronic	26	0	0	42	8	19.04761905	0	0	NA	0	0	NA	0.864122853	0	0	0.135877147	1	0	0.864122853	unphased	1.012521096	1.012521096	1	0.00125	0.99625	0.0025	0	2	3.96E-11	1	1	1	NA	NA	NA	NA
1351289	1206755005	PD9774b	6	166031225	A	C	PDE10A	CCDS5289.1	r.?	-	-	intronic	29	0	0	49	8	16.32653061	0	0	NA	0	0	NA	0.864122853	0	0	0.135877147	1	0	0.864122853	unphased	0.867875226	1.004342406	0.864122853	0.0025	0.9975	0	0	2	1.47E-10	1	1	1	NA	NA	NA	NA
1351289	1206755694	PD9774b	7	872585	A	C	SUN1	CCDS47525.1	r.?	-	-	intronic	35	0	0	42	9	21.42857143	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.168202765	1.168202765	1	0	1	0	0	2	7.51E-13	1	1	1	NA	NA	NA	NA
1351289	1206755897	PD9774b	7	2496631	T	C	ENSG00000230059	ENST00000432223	r.?	-	-	intronic	22	0	0	38	4	10.52631579	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.57385399	0.57385399	1	0.00375	0.995	0.00125	0	2	4.03E-05	1	1	1	NA	NA	NA	NA
1351289	1206756012	PD9774b	7	3612788	G	C	SDK1	CCDS34590.1	r.?	-	-	intronic	34	0	0	57	11	19.29824561	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.052065648	1.052065648	1	0.00125	0.9975	0.00125	0	2	7.29E-15	1	1	1	NA	NA	NA	NA
1351289	1206756476	PD9774b	7	8905403	T	C	-	-	-	-	-	-	36	0	0	41	9	21.95121951	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.196695515	1.196695515	1	0	1	0	0	2	5.92E-13	1	1	1	NA	NA	NA	NA
1351289	1206756500	PD9774b	7	9253666	T	C	-	-	-	-	-	-	38	0	0	50	7	14	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.763225806	0.763225806	1	0.00625	0.99375	0	0	2	6.46E-09	1	1	1	NA	NA	NA	NA
1351289	1206756803	PD9774b	7	13329943	G	C	-	-	-	-	-	-	22	0	0	31	5	16.12903226	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.879292404	0.879292404	1	0.00125	0.99875	0	0	2	4.76E-07	1	1	1	NA	NA	NA	NA
1351289	1206756957	PD9774b	7	15417908	T	C	TMEM195	CCDS34604.1	r.?	-	-	intronic	32	0	0	49	7	14.28571429	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.778801843	0.778801843	1	0.00375	0.99625	0	0	2	5.58E-09	1	1	1	NA	NA	NA	NA
1351289	1206756979	PD9774b	7	15606094	T	C	TMEM195	CCDS34604.1	r.?	-	-	upstream	25	0	0	64	10	15.625	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.851814516	0.851814516	1	0.005	0.995	0	0	2	1.16E-12	1	1	1	NA	NA	NA	NA
1351289	1206757033	PD9774b	7	16364036	A	C	ISPD	CCDS47550.1	r.?	-	-	intronic	35	0	0	61	4	6.557377049	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.357482813	0.357482813	1	0.03125	0.96875	0	0	2	0.000259828	1	1	1	NA	NA	NA	NA
1351289	1206757139	PD9774b	7	17976350	T	C	SNX13	CCDS47551.1	r.?	-	-	intronic	30	0	0	69	12	17.39130435	0	0	NA	0	0	NA	2	2	0	1	NA	NA	NA	unphased	1.122019635	1.122019635	1	0	1	0	0	2	1.65E-15	1	1	1	NA	NA	NA	NA
1351289	1206757278	PD9774b	7	20199259	G	C	MACC1	CCDS5369.1	r.1034c>g	c.725C>G	p.A242G	missense	31	0	0	54	5	9.259259259	1	0	0	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.504778973	0.504778973	1	0.01	0.99	0	0	2	8.06E-06	1	1	1	NA	NA	NA	NA
1351289	1206757289	PD9774b	7	20455627	G	C	-	-	-	-	-	-	27	0	0	52	12	23.07692308	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.258064516	1.258064516	1	0.0025	0.99375	0.00375	0	2	4.19E-17	1	1	1	NA	NA	NA	NA
1351289	1206757595	PD9774b	7	24197305	G	C	-	-	-	-	-	-	34	0	0	47	6	12.76595745	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.695950583	0.695950583	1	0	1	0	0	2	1.41E-07	1	1	1	NA	NA	NA	NA
1351289	1206757611	PD9774b	7	24450475	G	C	-	-	-	-	-	-	24	0	0	55	8	14.54545455	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.792961877	0.792961877	1	0.0025	0.9975	0	0	2	3.86E-10	1	1	1	NA	NA	NA	NA
1351289	1206757778	PD9774b	7	27055043	G	C	-	-	-	-	-	-	22	0	0	27	7	25.92592593	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.413381123	1.413381123	1	0.00125	0.995	0.00375	0	2	6.36E-11	1	1	1	NA	NA	NA	NA
1351289	1206757948	PD9774b	7	29147650	T	C	CPVL	CCDS5419.1	r.?	-	-	intronic	36	0	0	54	16	29.62962963	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.615292712	1.615292712	1	0	0.96875	0.03125	0	2	2.69E-24	1	1	1	NA	NA	NA	NA
1351289	1206758070	PD9774b	7	30631318	G	C	GARS	CCDS43564.1	r.?	-	-	upstream	46	0	0	44	4	9.090909091	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.495601173	0.495601173	1	0.00625	0.99375	0	0	2	7.23E-05	1	1	1	NA	NA	NA	NA
1351289	1206758817	PD9774b	7	39731045	G	C	RALA	CCDS5460.1	r.?	-	-	intronic	30	0	0	50	7	14	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.763225806	0.763225806	1	0.00125	0.99875	0	0	2	6.46E-09	1	1	1	NA	NA	NA	NA
1351289	1206758940	PD9774b	7	41328328	A	C	-	-	-	-	-	-	37	0	0	44	8	18.18181818	2	0	0	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.991202346	0.991202346	1	0	1	0	0	2	5.90E-11	1	1	1	NA	NA	NA	NA
1351289	1206759053	PD9774b	7	43225175	G	C	HECW1	CCDS5469.2	r.?	-	-	intronic	35	0	0	48	9	18.75	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.022177419	1.022177419	1	0.0025	0.9975	0	0	2	2.75E-12	1	1	1	NA	NA	NA	NA
1351289	1206759383	PD9774b	7	46887359	T	C	-	-	-	-	-	-	39	0	0	57	8	14.03508772	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.765138653	0.765138653	1	0.00375	0.99625	0	0	2	5.19E-10	1	1	1	NA	NA	NA	NA
1351289	1206760160	PD9774b	7	55191973	T	C	EGFR	CCDS5514.1	r.?	-	-	intronic	28	0	0	59	8	13.55932203	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.73920175	0.73920175	1	0.0075	0.9925	0	0	2	6.90E-10	1	1	1	NA	NA	NA	NA
1351289	1206760442	PD9774b	7	57442641	G	C	-	-	-	-	-	-	34	0	0	49	6	12.24489796	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.789993417	0.789993417	1	0.0025	0.9975	0	0	2	1.82E-07	1	1	1	NA	NA	NA	NA
1351289	1206760496	PD9774b	7	57603156	T	C	-	-	-	-	-	-	41	0	0	56	4	7.142857143	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.460829493	0.460829493	1	0.01125	0.98875	0	0	2	0.000186538	1	1	1	NA	NA	NA	NA
1351289	1206767408	PD9774b	7	68211617	T	C	-	-	-	-	-	-	32	0	0	53	6	11.32075472	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.730371272	0.730371272	1	0.00125	0.99875	0	0	2	2.93E-07	1	1	1	NA	NA	NA	NA
1351289	1206767420	PD9774b	7	68332529	G	C	-	-	-	-	-	-	34	0	0	64	6	9.375	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.60483871	0.60483871	1	0.0125	0.9875	0	0	2	9.14E-07	1	1	1	NA	NA	NA	NA
1351289	1206767505	PD9774b	7	69104193	T	C	AUTS2	CCDS5539.1	r.?	-	-	intronic	30	0	0	57	10	17.54385965	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.131861913	1.131861913	1	0.00125	0.99875	0	0	2	3.40E-13	1	1	1	NA	NA	NA	NA
1351289	1206767782	PD9774b	7	71493396	T	C	CALN1	CCDS47603.1	r.?	-	-	intronic	35	0	0	60	9	15	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.967741935	0.967741935	1	0	1	0	0	2	2.29E-11	1	1	1	NA	NA	NA	NA
1351289	1206767816	PD9774b	7	71787690	G	C	CALN1	CCDS47603.1	r.?	-	-	intronic	34	0	0	48	4	8.333333333	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.537634409	0.537634409	1	0.005	0.995	0	0	2	0.000102016	1	1	1	NA	NA	NA	NA
1351289	1206767853	PD9774b	7	72017307	G	C	-	-	-	-	-	-	30	0	0	62	4	6.451612903	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.416233091	0.416233091	1	0.01375	0.98625	0	0	2	0.000276647	1	1	1	NA	NA	NA	NA
1351289	1206768553	PD9774b	7	78519800	A	C	MAGI2	CCDS5594.1	r.?	-	-	intronic	27	0	0	53	6	11.32075472	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.730371272	0.730371272	1	0.00375	0.99625	0	0	2	2.93E-07	1	1	1	NA	NA	NA	NA
1351289	1206768721	PD9774b	7	80667462	G	C	-	-	-	-	-	-	38	0	0	41	9	21.95121951	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.41620771	1.41620771	1	0	0.99375	0.00625	0	2	5.92E-13	1	1	1	NA	NA	NA	NA
1351289	1206768911	PD9774b	7	82878327	G	C	-	-	-	-	-	-	42	0	0	59	6	10.16949153	0	0	NA	0	0	NA	2.765129909	1	1	0.234870091	2	1	0.765129909	unphased	0.733906049	0.959191427	0.765129909	0.0025	0.9975	0	0	2	5.61E-07	1	1	1	NA	NA	NA	NA
1351289	1206768917	PD9774b	7	82949388	T	C	-	-	-	-	-	-	50	0	0	70	7	10	0	0	NA	0	0	NA	2.765129909	1	1	0.234870091	2	1	0.765129909	unphased	0.721674281	0.943204903	0.765129909	0.00125	0.99875	0	0	2	7.11E-08	1	1	1	NA	NA	NA	NA
1351289	1206769045	PD9774b	7	84032581	A	C	SEMA3A	ENST00000424555	r.?	-	-	intronic	44	0	0	58	10	17.24137931	0	0	NA	0	0	NA	1.850213785	1	0	0.149786215	1	1	0.850213785	unphased	1.086521843	1.086521843	1	0	0.99875	0.00125	0	2	4.10E-13	1	1	1	NA	NA	NA	NA
1351289	1206769263	PD9774b	7	87113341	G	C	AC002457.1	ENST00000505724	r.?	-	-	intronic	38	0	0	46	6	13.04347826	0	0	NA	0	0	NA	1.850213785	1	0	0.149786215	1	1	0.850213785	unphased	0.821977394	0.96678907	0.850213785	0.00125	0.99875	0	0	2	1.23E-07	1	1	1	NA	NA	NA	NA
1351289	1206769309	PD9774b	7	87872686	A	C	-	-	-	-	-	-	38	0	0	51	6	11.76470588	0	0	NA	0	0	NA	1.850213785	1	0	0.149786215	1	1	0.850213785	unphased	0.741391375	0.872005828	0.850213785	0.00125	0.99875	0	0	2	2.32E-07	1	1	1	NA	NA	NA	NA
1351289	1206769641	PD9774b	7	92577328	T	C	-	-	-	-	-	-	25	0	0	61	8	13.1147541	0	0	NA	0	0	NA	1.850213785	1	0	0.149786215	1	1	0.850213785	unphased	0.826469074	0.97207207	0.850213785	0.00375	0.99625	0	0	2	9.09E-10	1	1	1	NA	NA	NA	NA
1351289	1206769713	PD9774b	7	93734249	A	C	-	-	-	-	-	-	36	0	0	55	8	14.54545455	0	0	NA	0	0	NA	1.850213785	1	0	0.149786215	1	1	0.850213785	unphased	0.916629336	1.078116296	0.850213785	0	1	0	0	2	3.86E-10	1	1	1	NA	NA	NA	NA
1351289	1206769744	PD9774b	7	94388238	G	C	-	-	-	-	-	-	30	0	0	49	5	10.20408163	0	0	NA	0	0	NA	1.850213785	1	0	0.149786215	1	1	0.850213785	unphased	0.64304354	0.756331585	0.850213785	0.00375	0.99625	0	0	2	4.96E-06	1	1	1	NA	NA	NA	NA
1351289	1206769755	PD9774b	7	94607375	T	C	PPP1R9A	CCDS34683.1	r.?	-	-	intronic	35	0	0	53	6	11.32075472	0	0	NA	0	0	NA	1.850213785	1	0	0.149786215	1	1	0.850213785	unphased	0.713414342	0.839099947	0.850213785	0.00125	0.99875	0	0	2	2.93E-07	1	1	1	NA	NA	NA	NA
1351289	1206769902	PD9774b	7	96608984	A	C	-	-	-	-	-	-	44	0	0	54	5	9.259259259	0	0	NA	0	0	NA	1.850213785	1	0	0.149786215	1	1	0.850213785	unphased	0.583502471	0.686300883	0.850213785	0.00125	0.99875	0	0	2	8.06E-06	1	1	1	NA	NA	NA	NA
1351289	1206769905	PD9774b	7	96628738	G	C	-	-	-	-	-	-	32	0	0	31	5	16.12903226	0	0	NA	0	0	NA	1.850213785	1	0	0.149786215	1	1	0.850213785	unphased	1.016423659	1.016423659	1	0.00125	0.9975	0.00125	0	2	4.76E-07	1	1	1	NA	NA	NA	NA
1351289	1206770009	PD9774b	7	97945118	G	C	BAIAP2L1	CCDS34687.1	r.?	-	-	intronic	34	0	0	47	6	12.76595745	0	0	NA	0	0	NA	1.850213785	1	0	0.149786215	1	1	0.850213785	unphased	0.804488513	0.94621909	0.850213785	0.00125	0.99875	0	0	2	1.41E-07	1	1	1	NA	NA	NA	NA
1351289	1206770382	PD9774b	7	100979162	T	C	-	-	-	-	-	-	37	0	0	54	7	12.96296296	0	0	NA	0	0	NA	1.850213785	1	0	0.149786215	1	1	0.850213785	unphased	0.81690346	0.960821236	0.850213785	0.0025	0.99625	0.00125	0	2	1.13E-08	1	1	1	NA	NA	NA	NA
1351289	1206770386	PD9774b	7	100990581	G	C	-	-	-	-	-	-	19	0	0	54	11	20.37037037	0	0	NA	0	0	NA	1.850213785	1	0	0.149786215	1	1	0.850213785	unphased	1.283705436	1.283705436	1	0.00125	0.9925	0.00625	0	2	3.84E-15	1	1	1	NA	NA	NA	NA
1351289	1206770767	PD9774b	7	104179121	T	C	LHFPL3	ENST00000424859	r.?	-	-	intronic	43	0	0	49	7	14.28571429	0	0	NA	0	0	NA	1.850213785	1	0	0.149786215	1	1	0.850213785	unphased	0.900260955	1.058864219	0.850213785	0	0.99875	0.00125	0	2	5.58E-09	1	1	1	NA	NA	NA	NA
1351289	1206770886	PD9774b	7	105376525	G	C	ATXN7L1	CCDS47682.1	r.?	-	-	intronic	26	0	0	48	9	18.75	0	0	NA	0	0	NA	1.850213785	1	0	0.149786215	1	1	0.850213785	unphased	1.181592504	1.181592504	1	0	0.99875	0.00125	0	2	2.75E-12	1	1	1	NA	NA	NA	NA
1351289	1206771232	PD9774b	7	109462515	T	C	-	-	-	-	-	-	28	0	0	44	8	18.18181818	0	0	NA	0	0	NA	1.850213785	1	0	0.149786215	1	1	0.850213785	unphased	1.145786671	1.145786671	1	0	0.99875	0.00125	0	2	5.90E-11	1	1	1	NA	NA	NA	NA
1351289	1206771763	PD9774b	7	116309521	G	C	MET	CCDS43636.1	r.?	-	-	upstream	35	0	0	63	6	9.523809524	0	0	NA	0	0	NA	1.850213785	1	0	0.149786215	1	1	0.850213785	unphased	0.60017397	0.70590948	0.850213785	0.00375	0.995	0.00125	0	2	8.32E-07	1	1	1	NA	NA	NA	NA
1351289	1206771788	PD9774b	7	116655624	T	C	ST7OT3	CCDS5770.1	r.?	-	-	intronic	36	0	0	69	7	10.14492754	0	0	NA	0	0	NA	1.850213785	1	0	0.149786215	1	1	0.850213785	unphased	0.639315751	0.751947054	0.850213785	0.00375	0.99625	0	0	2	6.43E-08	1	1	1	NA	NA	NA	NA
1351289	1206771824	PD9774b	7	117314125	T	C	-	-	-	-	-	-	27	0	0	67	10	14.92537313	0	0	NA	0	0	NA	1.850213785	1	0	0.149786215	1	1	0.850213785	unphased	0.940571147	0.940571147	1	0	1	0	0	2	1.87E-12	1	1	1	NA	NA	NA	NA
1351289	1206772036	PD9774b	7	120704223	G	C	C7orf58	CCDS34739.1	r.?	-	-	intronic	44	0	0	53	7	13.20754717	0	0	NA	0	0	NA	1.850213785	1	0	0.149786215	1	1	0.850213785	unphased	0.832316732	0.978949939	0.850213785	0.0025	0.99625	0.00125	0	2	9.85E-09	1	1	1	NA	NA	NA	NA
1351289	1206772364	PD9774b	7	125067607	A	C	-	-	-	-	-	-	42	0	0	59	8	13.55932203	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.87479497	0.87479497	1	0	0.99875	0.00125	0	2	6.90E-10	1	1	1	NA	NA	NA	NA
1351289	1206772378	PD9774b	7	125286181	T	C	-	-	-	-	-	-	32	0	0	47	4	8.510638298	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.549073439	0.549073439	1	0.00375	0.99625	0	0	2	9.39E-05	1	1	1	NA	NA	NA	NA
1351289	1206772486	PD9774b	7	126119236	A	C	GRM8	CCDS5794.1	r.?	-	-	intronic	42	0	0	64	4	6.25	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.403225806	0.403225806	1	0.01375	0.98625	0	0	2	0.000312605	1	1	1	NA	NA	NA	NA
1351289	1206772636	PD9774b	7	127983209	G	C	RBM28	CCDS5801.1	r.?	-	-	intronic	32	0	0	52	6	11.53846154	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.744416873	0.744416873	1	0.005	0.995	0	0	2	2.61E-07	1	1	1	NA	NA	NA	NA
1351289	1206772642	PD9774b	7	128055480	G	C	-	-	-	-	-	-	35	0	0	56	7	12.5	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.806451613	0.806451613	1	0.00125	0.99875	0	0	2	1.46E-08	1	1	1	NA	NA	NA	NA
1351289	1206772918	PD9774b	7	130489118	G	C	-	-	-	-	-	-	33	0	0	61	9	14.75409836	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.951877314	0.951877314	1	0	1	0	0	2	2.68E-11	1	1	1	NA	NA	NA	NA
1351289	1206772951	PD9774b	7	130828252	G	C	MKLN1	ENST00000421797	r.?	-	-	intronic	43	0	0	52	4	7.692307692	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.496277916	0.496277916	1	0.005	0.995	0	0	2	0.000139698	1	1	1	NA	NA	NA	NA
1351289	1206773028	PD9774b	7	131754957	G	C	-	-	-	-	-	-	34	0	0	57	5	8.771929825	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.565930956	0.565930956	1	0.00125	0.99875	0	0	2	1.05E-05	1	1	1	NA	NA	NA	NA
1351289	1206773100	PD9774b	7	132723248	G	C	CHCHD3	CCDS5828.1	r.?	-	-	intronic	51	0	0	61	8	13.1147541	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.846113168	0.846113168	1	0.00125	0.99875	0	0	2	9.09E-10	1	1	1	NA	NA	NA	NA
1351289	1206773116	PD9774b	7	132907716	A	C	-	-	-	-	-	-	40	0	0	65	8	12.30769231	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.794044665	0.794044665	1	0.00125	0.99875	0	0	2	1.53E-09	1	1	1	NA	NA	NA	NA
1351289	1206773189	PD9774b	7	133768026	T	C	-	-	-	-	-	-	31	0	0	39	4	10.25641026	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.661703888	0.661703888	1	0.005	0.995	0	0	2	4.47E-05	1	1	1	NA	NA	NA	NA
1351289	1206773194	PD9774b	7	133857662	T	C	LRGUK	CCDS5830.1	r.?	-	-	intronic	30	0	0	64	6	9.375	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.60483871	0.60483871	1	0.00375	0.99625	0	0	2	9.14E-07	1	1	1	NA	NA	NA	NA
1351289	1206773331	PD9774b	7	135685347	T	C	-	-	-	-	-	-	34	0	0	70	7	10	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.64516129	0.64516129	1	0.005	0.99375	0.00125	0	2	7.11E-08	1	1	1	NA	NA	NA	NA
1351289	1206773344	PD9774b	7	135817844	T	C	-	-	-	-	-	-	38	0	0	60	5	8.333333333	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.537634409	0.537634409	1	0.0075	0.9925	0	0	2	1.36E-05	1	1	1	NA	NA	NA	NA
1351289	1206773358	PD9774b	7	135987141	G	C	-	-	-	-	-	-	25	0	0	43	7	16.27906977	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.050262566	1.050262566	1	0	0.995	0.005	0	2	2.15E-09	1	1	1	NA	NA	NA	NA
1351289	1206773743	PD9774b	7	139927002	G	C	-	-	-	-	-	-	33	0	0	52	6	11.53846154	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.744416873	0.744416873	1	0.0025	0.9975	0	0	2	2.61E-07	1	1	1	NA	NA	NA	NA
1351289	1206773806	PD9774b	7	140601516	G	C	BRAF	CCDS5863.1	r.?	-	-	intronic	29	0	0	65	5	7.692307692	0	0	NA	0	0	NA	2.743963828	1	1	0.256036172	2	1	0.743963828	unphased	0.553505902	0.743995718	0.743963828	0.00125	0.9975	0.00125	0	2	2.01E-05	1	1	1	NA	NA	NA	NA
1351289	1206773830	PD9774b	7	140944290	A	C	-	-	-	-	-	-	35	0	0	68	5	7.352941176	0	0	NA	0	0	NA	2.743963828	1	1	0.256036172	2	1	0.743963828	unphased	0.529086524	0.711172378	0.743963828	0	0.99875	0.00125	0	2	2.51E-05	1	1	1	NA	NA	NA	NA
1351289	1206773912	PD9774b	7	141838836	T	C	ENSG00000204987	ENST00000477922	r.?	-	-	intronic	36	0	0	75	14	18.66666667	0	0	NA	0	0	NA	2.743963828	1	1	0.256036172	2	1	0.743963828	unphased	1.343174323	1.343174323	1	0	0.99625	0.00375	0	2	2.57E-18	1	1	1	NA	NA	NA	NA
1351289	1206774012	PD9774b	7	142129192	G	C	-	-	-	-	-	-	20	0	0	71	11	15.49295775	0	0	NA	0	0	NA	2.743963828	1	1	0.256036172	2	1	0.743963828	unphased	1.114807663	1.114807663	1	0	0.99875	0.00125	0	2	9.49E-14	1	1	1	NA	NA	NA	NA
1351289	1206774093	PD9774b	7	142332318	G	C	-	-	-	-	-	-	36	0	0	65	8	12.30769231	0	0	NA	0	0	NA	2.743963828	1	1	0.256036172	2	1	0.743963828	unphased	0.885609444	0.885609444	1	0.0025	0.9975	0	0	2	1.53E-09	1	1	1	NA	NA	NA	NA
1351289	1206774411	PD9774b	7	144876783	G	C	-	-	-	-	-	-	39	0	0	52	4	7.692307692	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.496277916	0.496277916	1	0.0125	0.9875	0	0	2	0.000139698	1	1	1	NA	NA	NA	NA
1351289	1206774533	PD9774b	7	146517397	T	C	CNTNAP2	CCDS5889.1	r.?	-	-	intronic	33	0	0	58	10	17.24137931	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.112347052	1.112347052	1	0	0.99875	0.00125	0	2	4.10E-13	1	1	1	NA	NA	NA	NA
1351289	1206774638	PD9774b	7	147482183	T	C	CNTNAP2	CCDS5889.1	r.?	-	-	intronic	27	0	0	52	6	11.53846154	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.744416873	0.744416873	1	0.00375	0.99625	0	0	2	2.61E-07	1	1	1	NA	NA	NA	NA
1351289	1206774844	PD9774b	7	149575279	A	C	ATP6V0E2	CCDS47742.1	r.?	-	-	intronic	34	0	0	57	7	12.28070175	151	0	0	12	2	16.66666667	2	1	1	1	NA	NA	NA	unphased	0.792303339	0.792303339	1	0.005	0.995	0	0	2	1.66E-08	1	0.001595918	1	NA	NA	NA	NA
1351289	1206774933	PD9774b	7	150015447	G	C	LRRC61	CCDS5901.1	r.?	-	-	upstream	35	0	0	53	7	13.20754717	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.852099817	0.852099817	1	0.0025	0.99625	0.00125	0	2	9.85E-09	1	1	1	NA	NA	NA	NA
1351289	1206775662	PD9774b	7	152347825	G	C	XRCC2	CCDS5933.1	r.?	-	-	intronic	26	0	0	50	8	16	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.032258065	1.032258065	1	0	0.9975	0.0025	0	2	1.74E-10	1	1	1	NA	NA	NA	NA
1351289	1206775678	PD9774b	7	152469834	G	C	ACTR3B	CCDS5934.1	r.?	-	-	intronic	19	0	0	49	6	12.24489796	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.789993417	0.789993417	1	0.00125	0.9975	0.00125	0	2	1.82E-07	1	1	1	NA	NA	NA	NA
1351289	1206775717	PD9774b	7	152752087	T	C	-	-	-	-	-	-	33	0	0	56	7	12.5	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.806451613	0.806451613	1	0.0025	0.9975	0	0	2	1.46E-08	1	1	1	NA	NA	NA	NA
1351289	1206775890	PD9774b	7	154504809	G	C	DPP6	ENST00000404039	r.?	-	-	intronic	37	0	0	66	8	12.12121212	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.782013685	0.782013685	1	0	1	0	0	2	1.73E-09	1	1	1	NA	NA	NA	NA
1351289	1206776030	PD9774b	7	155345221	G	C	-	-	-	-	-	-	34	0	0	56	5	8.928571429	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.576036866	0.576036866	1	0.00375	0.99625	0	0	2	9.65E-06	1	1	1	NA	NA	NA	NA
1351289	1206776085	PD9774b	7	155757141	T	C	ENSG00000204876	ENST00000424278	r.921-5u>c	c.921-5T>C	p.?	splice region	34	0	0	51	6	11.76470588	205	0	0	143	18	12.58741259	2	1	1	1	NA	NA	NA	unphased	0.759013283	0.759013283	1	0.0025	0.9975	0	0	2	2.32E-07	1	6.74E-20	1	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206776136	PD9774b	7	156090548	G	C	-	-	-	-	-	-	44	0	0	68	10	14.70588235	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.948766603	0.948766603	1	0	0.99875	0.00125	0	2	2.18E-12	1	1	1	NA	NA	NA	NA
1351289	1206776141	PD9774b	7	156228248	T	C	-	-	-	-	-	-	24	0	0	40	5	12.5	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.806451613	0.806451613	1	0.00125	0.99875	0	0	2	1.78E-06	1	1	1	NA	NA	NA	NA
1351289	1206776281	PD9774b	7	157422394	A	C	PTPRN2	CCDS5949.1	r.?	-	-	intronic	38	0	0	46	6	13.04347826	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.841514727	0.841514727	1	0.00125	0.99875	0	0	2	1.23E-07	1	1	1	NA	NA	NA	NA
1351289	1206776344	PD9774b	7	157780909	G	C	PTPRN2	CCDS5949.1	r.?	-	-	intronic	36	0	0	56	4	7.142857143	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.460829493	0.460829493	1	0.01125	0.98875	0	0	2	0.000186538	1	1	1	NA	NA	NA	NA
1351289	1206776586	PD9774b	7	158191697	T	C	PTPRN2	CCDS5949.1	r.?	-	-	intronic	30	0	0	57	6	10.52631579	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.679117148	0.679117148	1	0.0025	0.9975	0	0	2	4.56E-07	1	1	1	NA	NA	NA	NA
1351289	1206776795	PD9774b	7	159058046	A	C	-	-	-	-	-	-	35	0	0	58	4	6.896551724	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.444938821	0.444938821	1	0.01375	0.985	0.00125	0	2	0.000213772	1	1	1	NA	NA	NA	NA
1351289	1206776895	PD9774b	8	789154	G	C	-	-	-	-	-	-	28	0	0	58	4	6.896551724	0	0	NA	0	0	NA	1.490411309	1	0	0.509588691	2	0	0.490411309	unphased	0.409794773	0.835614444	0.490411309	0.00375	0.99625	0	0	2	0.000213772	1	1	1	NA	NA	NA	NA
1351289	1206776913	PD9774b	8	928594	G	C	C8orf68	ENST00000450568	r.?	-	-	intronic	54	0	0	53	5	9.433962264	0	0	NA	0	0	NA	1.490411309	1	0	0.509588691	2	0	0.490411309	unphased	0.560568322	1.143057494	0.490411309	0	0.99875	0.00125	0	2	7.34E-06	1	1	1	NA	NA	NA	NA
1351289	1206777124	PD9774b	8	2142234	A	C	-	-	-	-	-	-	30	0	0	44	5	11.36363636	0	0	NA	0	0	NA	1.490411309	1	0	0.509588691	2	0	0.490411309	unphased	0.675230024	0.675230024	1	0.00625	0.99375	0	0	2	2.88E-06	1	1	1	NA	NA	NA	NA
1351289	1206777310	PD9774b	8	3074611	A	C	CSMD1	ENST00000318252	r.?	-	-	intronic	45	0	0	55	20	36.36363636	0	0	NA	0	0	NA	1.490411309	1	0	0.509588691	2	0	0.490411309	unphased	2.160736077	1.449758241	1.490411309	0	0.9775	0.0225	0	2	4.08E-32	1	1	1	NA	NA	NA	NA
1351289	1206777325	PD9774b	8	3212624	T	C	CSMD1	ENST00000318252	r.?	-	-	intronic	49	0	0	51	4	7.843137255	0	0	NA	0	0	NA	1.490411309	1	0	0.509588691	2	0	0.490411309	unphased	0.466041115	0.950306623	0.490411309	0.0025	0.995	0.0025	0	2	0.000129466	1	1	1	NA	NA	NA	NA
1351289	1206777326	PD9774b	8	3245333	A	C	CSMD1	ENST00000318252	r.?	-	-	intronic	31	0	0	50	4	8	0	0	NA	0	0	NA	1.490411309	1	0	0.509588691	2	0	0.490411309	unphased	0.475361937	0.969312755	0.490411309	0.00125	0.9975	0.00125	0	2	0.000119787	1	1	1	NA	NA	NA	NA
1351289	1206777428	PD9774b	8	4301967	A	C	-	-	-	-	-	-	27	0	0	63	8	12.6984127	0	0	NA	0	0	NA	1.490411309	1	0	0.509588691	2	0	0.490411309	unphased	0.754542757	0.754542757	1	0.0025	0.9975	0	0	2	1.18E-09	1	1	1	NA	NA	NA	NA
1351289	1206777442	PD9774b	8	4495408	G	C	-	-	-	-	-	-	30	0	0	45	10	22.22222222	0	0	NA	0	0	NA	1.490411309	1	0	0.509588691	2	0	0.490411309	unphased	1.320449825	1.320449825	1	0	0.9925	0.0075	0	2	2.66E-14	1	1	1	NA	NA	NA	NA
1351289	1206777488	PD9774b	8	5156183	T	C	-	-	-	-	-	-	57	0	0	59	5	8.474576271	0	0	NA	0	0	NA	1.490411309	1	0	0.509588691	2	0	0.490411309	unphased	0.503561374	1.026814359	0.490411309	0	0.99875	0.00125	0	2	1.25E-05	1	1	1	NA	NA	NA	NA
1351289	1206777640	PD9774b	8	6512322	G	C	-	-	-	-	-	-	23	0	0	39	5	12.82051282	0	0	NA	0	0	NA	1.490411309	1	0	0.509588691	2	0	0.490411309	unphased	0.761797976	0.761797976	1	0.00125	0.9975	0.00125	0	2	1.56E-06	1	1	1	NA	NA	NA	NA
1351289	1206777852	PD9774b	8	8092435	A	C	ENSG00000164845	ENST00000427893	r.?	-	-	intronic	39	0	0	53	4	7.547169811	0	0	NA	0	0	NA	1.490411309	1	0	0.509588691	2	0	0.490411309	unphased	0.448454658	0.914445996	0.490411309	0.00375	0.995	0.00125	0	2	0.000150502	1	1	1	NA	NA	NA	NA
1351289	1206778439	PD9774b	8	12989578	G	C	DLC1	CCDS5989.1	r.?	-	-	intronic	26	0	0	42	5	11.9047619	0	0	NA	0	0	NA	0.841880723	0	0	0.158119277	1	0	0.841880723	unphased	0.630177813	0.748535743	0.841880723	0	1	0	0	2	2.28E-06	1	1	1	NA	NA	NA	NA
1351289	1206778577	PD9774b	8	14902574	A	C	SGCZ	CCDS5992.2	r.?	-	-	intronic	37	0	0	44	4	9.090909091	0	0	NA	0	0	NA	0.841880723	0	0	0.158119277	1	0	0.841880723	unphased	0.481226693	0.571609113	0.841880723	0.00375	0.99625	0	0	2	7.23E-05	1	1	1	NA	NA	NA	NA
1351289	1206778600	PD9774b	8	15517845	A	C	TUSC3	CCDS5993.1	r.?	-	-	intronic	32	0	0	41	4	9.756097561	0	0	NA	0	0	NA	0.841880723	0	0	0.158119277	1	0	0.841880723	unphased	0.516438403	0.61343417	0.841880723	0.00625	0.99375	0	0	2	5.46E-05	1	1	1	NA	NA	NA	NA
1351289	1206778874	PD9774b	8	18731582	G	C	PSD3	CCDS43720.1	r.?	-	-	intronic	36	0	0	56	5	8.928571429	0	0	NA	0	0	NA	0.841880723	0	0	0.158119277	1	0	0.841880723	unphased	0.47263336	0.561401807	0.841880723	0.005	0.995	0	0	2	9.65E-06	1	1	1	NA	NA	NA	NA
1351289	1206779176	PD9774b	8	22902862	T	C	TNFRSF10B	CCDS6035.1	r.?	-	-	intronic	28	0	0	43	5	11.62790698	0	0	NA	0	0	NA	0.841880723	0	0	0.158119277	1	0	0.841880723	unphased	0.615522515	0.731127935	0.841880723	0.0025	0.9975	0	0	2	2.57E-06	1	1	1	NA	NA	NA	NA
1351289	1206779486	PD9774b	8	27354842	G	C	EPHX2	CCDS6060.1	r.?	-	-	intronic	39	0	0	34	3	8.823529412	0	0	NA	0	0	NA	0.841880723	0	0	0.158119277	1	0	0.841880723	unphased	0.467072967	0.55479708	0.841880723	0.00375	0.99625	0	0	2	0.000666058	1	1	1	NA	NA	NA	NA
1351289	1206780113	PD9774b	8	35478425	T	C	UNC5D	CCDS6093.2	r.?	-	-	intronic	35	0	0	39	10	25.64102564	0	0	NA	0	0	NA	0.841880723	0	0	0.158119277	1	0	0.841880723	unphased	1.357306058	1.357306058	1	0	0.9975	0.0025	0	2	5.44E-15	1	1	1	NA	NA	NA	NA
1351289	1206780120	PD9774b	8	35668410	A	C	-	-	-	-	-	-	31	0	0	57	9	15.78947368	0	0	NA	0	0	NA	0.841880723	0	0	0.158119277	1	0	0.841880723	unphased	0.835814783	0.992794775	0.841880723	0	0.99875	0.00125	0	2	1.42E-11	1	1	1	NA	NA	NA	NA
1351289	1206780275	PD9774b	8	38024388	T	C	LSM1	CCDS6103.1	r.?	-	-	intronic	23	0	0	51	9	17.64705882	0	0	NA	0	0	NA	0.841880723	0	0	0.158119277	1	0	0.841880723	unphased	0.934145934	0.934145934	1	0.00125	0.99875	0	0	2	4.92E-12	1	1	1	NA	NA	NA	NA
1351289	1206780470	PD9774b	8	40333700	G	C	-	-	-	-	-	-	30	0	0	56	4	7.142857143	0	0	NA	0	0	NA	0.841880723	0	0	0.158119277	1	0	0.841880723	unphased	0.378106688	0.449121446	0.841880723	0.0175	0.9825	0	0	2	0.000186538	1	1	1	NA	NA	NA	NA
1351289	1206780682	PD9774b	8	42784282	G	C	HOOK3	CCDS6139.1	r.?	-	-	intronic	34	0	0	48	10	20.83333333	0	0	NA	0	0	NA	0.841880723	0	0	0.158119277	1	0	0.841880723	unphased	1.102811172	1.102811172	1	0	1	0	0	2	5.37E-14	1	1	1	NA	NA	NA	NA
1351289	1206782206	PD9774b	8	56502566	G	C	-	-	-	-	-	-	42	0	0	48	7	14.58333333	0	0	NA	0	0	NA	0.841880723	0	0	0.158119277	1	0	0.841880723	unphased	0.771967821	0.916956285	0.841880723	0.0025	0.9975	0	0	2	4.81E-09	1	1	1	NA	NA	NA	NA
1351289	1206782496	PD9774b	8	61585313	G	C	-	-	-	-	-	-	35	0	0	47	5	10.63829787	0	0	NA	0	0	NA	0.841880723	0	0	0.158119277	1	0	0.841880723	unphased	0.56313762	0.668904281	0.841880723	0.0025	0.9975	0	0	2	4.02E-06	1	1	1	NA	NA	NA	NA
1351289	1206782851	PD9774b	8	67666154	A	C	SGK3	CCDS6195.1	r.?	-	-	intronic	37	0	0	56	4	7.142857143	0	0	NA	0	0	NA	0.841880723	0	0	0.158119277	1	0	0.841880723	unphased	0.378106688	0.449121446	0.841880723	0.00875	0.99125	0	0	2	0.000186538	1	1	1	NA	NA	NA	NA
1351289	1206783084	PD9774b	8	71581717	G	C	XKR9	CCDS34905.1	r.118g>c	c.?	p.?	5'UTR variant	26	0	0	23	7	30.43478261	229	2	0.873362445	119	7	5.882352941	0.841880723	0	0	0.158119277	1	0	0.841880723	unphased	1.611063278	1.611063278	1	0.00125	0.99125	0.0075	0	2	1.79E-11	1	2.68E-06	0.3175416	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206783187	PD9774b	8	73135847	A	C	-	-	-	-	-	-	28	0	0	60	7	11.66666667	0	0	NA	0	0	NA	0.841880723	0	0	0.158119277	1	0	0.841880723	unphased	0.617574256	0.733565028	0.841880723	0.0025	0.9975	0	0	2	2.39E-08	1	1	1	NA	NA	NA	NA
1351289	1206783682	PD9774b	8	80942693	G	C	TPD52	CCDS34912.1	r.?	-	-	downstream	35	0	0	50	5	10	0	0	NA	0	0	NA	1.315636663	1	0	0.684363337	2	0	0.315636663	unphased	0.576724957	0.576724957	1	0.00375	0.99625	0	0	2	5.49E-06	1	1	1	NA	NA	NA	NA
1351289	1206783727	PD9774b	8	81361805	G	C	-	-	-	-	-	-	24	0	0	45	4	8.888888889	0	0	NA	0	0	NA	1.315636663	1	0	0.684363337	2	0	0.315636663	unphased	0.512644406	0.512644406	1	0.00875	0.99125	0	0	2	7.91E-05	1	1	1	NA	NA	NA	NA
1351289	1206784005	PD9774b	8	86078785	G	C	-	-	-	-	-	-	36	0	0	63	4	6.349206349	0	0	NA	0	0	NA	1.315636663	1	0	0.684363337	2	0	0.315636663	unphased	0.366174576	1.160114204	0.315636663	0.00125	0.9975	0.00125	0	2	0.000294233	1	1	1	NA	NA	NA	NA
1351289	1206784271	PD9774b	8	87895640	G	C	-	-	-	-	-	-	32	0	0	68	10	14.70588235	0	0	NA	0	0	NA	1.315636663	1	0	0.684363337	2	0	0.315636663	unphased	0.848124936	0.848124936	1	0	1	0	0	2	2.18E-12	1	1	1	NA	NA	NA	NA
1351289	1206784283	PD9774b	8	88159056	T	C	-	-	-	-	-	-	27	0	0	53	18	33.96226415	0	0	NA	0	0	NA	3.486636081	3	0	0.513363919	4	0	0.486636081	unphased	2.696009089	1.084199296	2.486636081	0	0.9975	0.0025	0	2	2.09E-28	1	1	1	NA	NA	NA	NA
1351289	1206784391	PD9774b	8	88998707	G	C	-	-	-	-	-	-	42	0	0	86	5	5.813953488	0	0	NA	0	0	NA	3.486636081	3	0	0.513363919	4	0	0.486636081	unphased	0.461526104	0.948400914	0.486636081	0.00625	0.9925	0.00125	0	2	7.77E-05	1	1	1	NA	NA	NA	NA
1351289	1206784604	PD9774b	8	91064254	G	C	DECR1	CCDS6250.1	r.?	-	-	downstream	38	0	0	89	10	11.23595506	0	0	NA	0	0	NA	3.486636081	3	0	0.513363919	4	0	0.486636081	unphased	0.891938088	0.891938088	1	0	1	0	0	2	3.47E-11	1	1	1	NA	NA	NA	NA
1351289	1206784736	PD9774b	8	92162964	G	C	LRRC69	CCDS47890.1	r.?	-	-	intronic	28	0	0	78	4	5.128205128	0	0	NA	0	0	NA	3.486636081	3	0	0.513363919	4	0	0.486636081	unphased	0.407089691	0.836538242	0.486636081	0.00125	0.99875	0	0	2	0.000663934	1	1	1	NA	NA	NA	NA
1351289	1206784786	PD9774b	8	92608403	A	C	-	-	-	-	-	-	35	0	0	92	8	8.695652174	0	0	NA	0	0	NA	3.486636081	3	0	0.513363919	4	0	0.486636081	unphased	0.69028252	0.69028252	1	0.0025	0.9975	0	0	2	2.50E-08	1	1	1	NA	NA	NA	NA
1351289	1206784943	PD9774b	8	94351775	G	C	-	-	-	-	-	-	33	0	0	90	5	5.555555556	0	0	NA	0	0	NA	3.486636081	3	0	0.513363919	4	0	0.486636081	unphased	0.441013832	0.906249762	0.486636081	0.00125	0.99875	0	0	2	9.65E-05	1	1	1	NA	NA	NA	NA
1351289	1206784984	PD9774b	8	94953840	G	C	-	-	-	-	-	-	31	0	0	49	6	12.24489796	0	0	NA	0	0	NA	3.486636081	3	0	0.513363919	4	0	0.486636081	unphased	0.972030488	0.972030488	1	0.005	0.995	0	0	2	1.82E-07	1	1	1	NA	NA	NA	NA
1351289	1206785110	PD9774b	8	95814434	G	C	-	-	-	-	-	-	40	0	0	77	4	5.194805195	0	0	NA	0	0	NA	4.520177791	4	0	0.479822209	5	0	0.520177791	unphased	0.466067049	0.895976447	0.520177791	0.0025	0.9975	0	0	2	0.000632383	1	1	1	NA	NA	NA	NA
1351289	1206785244	PD9774b	8	96639207	T	C	-	-	-	-	-	-	29	0	0	91	7	7.692307692	0	0	NA	0	0	NA	4.520177791	4	0	0.479822209	5	0	0.520177791	unphased	0.690137746	0.690137746	1	0.01	0.99	0	0	2	4.38E-07	1	1	1	NA	NA	NA	NA
1351289	1206785249	PD9774b	8	96657622	T	C	-	-	-	-	-	-	27	0	0	67	8	11.94029851	0	0	NA	0	0	NA	4.520177791	4	0	0.479822209	5	0	0.520177791	unphased	1.07125859	1.07125859	1	0.00125	0.99625	0.0025	0	2	1.96E-09	1	1	1	NA	NA	NA	NA
1351289	1206785314	PD9774b	8	97186383	T	C	-	-	-	-	-	-	27	0	0	83	6	7.228915663	0	0	NA	0	0	NA	4.520177791	4	0	0.479822209	5	0	0.520177791	unphased	0.648563183	1.246810598	0.520177791	0.00125	0.995	0.00375	0	2	4.24E-06	1	1	1	NA	NA	NA	NA
1351289	1206785415	PD9774b	8	98070772	T	C	ENSG00000104324	CCDS6273.1	r.?	-	-	intronic	39	0	0	78	6	7.692307692	0	0	NA	0	0	NA	4.520177791	4	0	0.479822209	5	0	0.520177791	unphased	0.690137746	0.690137746	1	0.005	0.995	0	0	2	2.95E-06	1	1	1	NA	NA	NA	NA
1351289	1206785473	PD9774b	8	98644452	G	C	-	-	-	-	-	-	33	0	0	76	8	10.52631579	0	0	NA	0	0	NA	4.520177791	4	0	0.479822209	5	0	0.520177791	unphased	0.94439902	0.94439902	1	0	0.9975	0.0025	0	2	5.44E-09	1	1	1	NA	NA	NA	NA
1351289	1206785554	PD9774b	8	99251978	G	C	NIPAL2	CCDS6278.1	r.?	-	-	intronic	34	0	0	90	4	4.444444444	0	0	NA	0	0	NA	4.520177791	4	0	0.479822209	5	0	0.520177791	unphased	0.398746253	0.766557627	0.520177791	0.00625	0.99375	0	0	2	0.001134224	1	1	1	NA	NA	NA	NA
1351289	1206785628	PD9774b	8	99775649	G	C	ENSG00000104375	CCDS47900.1	r.?	-	-	intronic	38	0	0	94	7	7.446808511	0	0	NA	0	0	NA	4.520177791	4	0	0.479822209	5	0	0.520177791	unphased	0.668112073	1.284391768	0.520177791	0	0.99375	0.00625	0	2	5.47E-07	1	1	1	NA	NA	NA	NA
1351289	1206785732	PD9774b	8	100656515	G	C	VPS13B	CCDS6280.1	r.?	-	-	intronic	25	0	0	87	4	4.597701149	0	0	NA	0	0	NA	4.520177791	4	0	0.479822209	5	0	0.520177791	unphased	0.412496124	0.792990648	0.520177791	0.005	0.995	0	0	2	0.00099983	1	1	1	NA	NA	NA	NA
1351289	1206785814	PD9774b	8	101259353	G	C	-	-	-	-	-	-	18	0	0	85	6	7.058823529	0	0	NA	0	0	NA	4.520177791	4	0	0.479822209	5	0	0.520177791	unphased	0.633302873	1.217473878	0.520177791	0.00125	0.995	0.00375	0	2	4.87E-06	1	1	1	NA	NA	NA	NA
1351289	1206785843	PD9774b	8	101596629	T	C	SNX31	CCDS6288.1	r.?	-	-	intronic	25	0	0	92	5	5.434782609	0	0	NA	0	0	NA	4.520177791	4	0	0.479822209	5	0	0.520177791	unphased	0.48759732	0.937366663	0.520177791	0	0.99875	0.00125	0	2	0.000107074	1	1	1	NA	NA	NA	NA
1351289	1206785866	PD9774b	8	101840912	T	C	-	-	-	-	-	-	28	0	0	63	10	15.87301587	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	1.182795699	1.182795699	1	0	0.99875	0.00125	0	2	9.81E-13	1	1	1	NA	NA	NA	NA
1351289	1206785951	PD9774b	8	102573362	T	C	GRHL2	CCDS34931.1	r.?	-	-	intronic	30	0	0	67	6	8.955223881	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	0.667308618	0.667308618	1	0.00625	0.99375	0	0	2	1.20E-06	1	1	1	NA	NA	NA	NA
1351289	1206786157	PD9774b	8	104194835	A	C	BAALC	CCDS6297.1	r.?	-	-	intronic	29	0	0	89	7	7.865168539	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	0.586081914	0.586081914	1	0.00625	0.99375	0	0	2	3.76E-07	1	1	1	NA	NA	NA	NA
1351289	1206786158	PD9774b	8	104195805	T	C	BAALC	CCDS6297.1	r.?	-	-	intronic	47	0	0	63	6	9.523809524	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	0.709677419	0.709677419	1	0.005	0.995	0	0	2	8.32E-07	1	1	1	NA	NA	NA	NA
1351289	1206786190	PD9774b	8	104744182	T	C	RIMS2	ENST00000504942	r.?	-	-	intronic	36	0	0	66	5	7.575757576	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	0.564516129	0.564516129	1	0.0075	0.9925	0	0	2	2.17E-05	1	1	1	NA	NA	NA	NA
1351289	1206786193	PD9774b	8	104769427	G	C	RIMS2	ENST00000504942	r.?	-	-	intronic	39	0	0	61	6	9.836065574	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	0.732945531	0.732945531	1	0.00375	0.99625	0	0	2	6.85E-07	1	1	1	NA	NA	NA	NA
1351289	1206786203	PD9774b	8	104891995	A	C	RIMS2	ENST00000507740	r.?	-	-	intronic	36	0	0	70	6	8.571428571	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	0.638709677	0.638709677	1	0.00625	0.99375	0	0	2	1.56E-06	1	1	1	NA	NA	NA	NA
1351289	1206786222	PD9774b	8	105172791	G	C	RIMS2	ENST00000507740	r.?	-	-	intronic	44	0	0	70	5	7.142857143	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	0.532258065	0.532258065	1	0.01125	0.98875	0	0	2	2.89E-05	1	1	1	NA	NA	NA	NA
1351289	1206786256	PD9774b	8	105431268	T	C	DPYS	CCDS6302.1	r.?	-	-	intronic	27	0	0	71	6	8.450704225	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	0.629713766	0.629713766	1	0.005	0.995	0	0	2	1.69E-06	1	1	1	NA	NA	NA	NA
1351289	1206786343	PD9774b	8	106511291	G	C	ZFPM2	CCDS47908.1	r.?	-	-	intronic	27	0	0	66	8	12.12121212	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	0.903225806	0.903225806	1	0.00125	0.99875	0	0	2	1.73E-09	1	1	1	NA	NA	NA	NA
1351289	1206786393	PD9774b	8	106924314	T	C	-	-	-	-	-	-	35	0	0	62	6	9.677419355	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	0.721123829	0.721123829	1	0.00125	0.9975	0.00125	0	2	7.56E-07	1	1	1	NA	NA	NA	NA
1351289	1206786426	PD9774b	8	107330520	G	C	OXR1	CCDS47909.1	r.?	-	-	intronic	32	0	0	75	14	18.66666667	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	1.390967742	1.390967742	1	0	0.995	0.005	0	2	2.57E-18	1	1	1	NA	NA	NA	NA
1351289	1206786529	PD9774b	8	108106087	G	C	-	-	-	-	-	-	35	0	0	72	4	5.555555556	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	0.413978495	0.413978495	1	0.01875	0.98125	0	0	2	0.000490365	1	1	1	NA	NA	NA	NA
1351289	1206786576	PD9774b	8	108485105	T	C	ANGPT1	CCDS6306.1	r.?	-	-	intronic	44	0	0	61	9	14.75409836	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	1.099418297	1.099418297	1	0.0025	0.9975	0	0	2	2.68E-11	1	1	1	NA	NA	NA	NA
1351289	1206786583	PD9774b	8	108603092	T	C	-	-	-	-	-	-	40	0	0	52	7	13.46153846	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	1.003101737	1.003101737	1	0.00125	0.9975	0.00125	0	2	8.58E-09	1	1	1	NA	NA	NA	NA
1351289	1206786850	PD9774b	8	111703868	T	C	-	-	-	-	-	-	37	0	0	72	6	8.333333333	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	0.620967742	0.620967742	1	0.00625	0.99375	0	0	2	1.84E-06	1	1	1	NA	NA	NA	NA
1351289	1206786954	PD9774b	8	113302484	T	C	CSMD3	CCDS6315.1	r.?	-	-	intronic	35	0	0	70	7	10	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	0.74516129	0.74516129	1	0.00125	0.99875	0	0	2	7.11E-08	1	1	1	NA	NA	NA	NA
1351289	1206787108	PD9774b	8	114610238	T	C	-	-	-	-	-	-	34	0	0	67	10	14.92537313	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	1.11218103	1.11218103	1	0	0.99875	0.00125	0	2	1.87E-12	1	1	1	NA	NA	NA	NA
1351289	1206787168	PD9774b	8	115068714	T	C	-	-	-	-	-	-	46	0	0	70	7	10	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	0.74516129	0.74516129	1	0.00375	0.99625	0	0	2	7.11E-08	1	1	1	NA	NA	NA	NA
1351289	1206787205	PD9774b	8	115664447	T	C	-	-	-	-	-	-	46	0	0	76	6	7.894736842	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	0.588285229	0.588285229	1	0.00125	0.99875	0	0	2	2.53E-06	1	1	1	NA	NA	NA	NA
1351289	1206787233	PD9774b	8	116087604	T	C	-	-	-	-	-	-	35	0	0	71	8	11.26760563	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	0.839618355	0.839618355	1	0.0025	0.9975	0	0	2	3.14E-09	1	1	1	NA	NA	NA	NA
1351289	1206787264	PD9774b	8	116450172	G	C	TRPS1	CCDS6318.2	r.?	-	-	intronic	23	0	0	75	8	10.66666667	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	0.79483871	0.79483871	1	0.00125	0.99875	0	0	2	4.89E-09	1	1	1	NA	NA	NA	NA
1351289	1206787295	PD9774b	8	116648932	G	C	TRPS1	CCDS6318.2	r.?	-	-	intronic	36	0	0	75	4	5.333333333	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	0.397419355	0.397419355	1	0.01625	0.98375	0	0	2	0.000572493	1	1	1	NA	NA	NA	NA
1351289	1206787322	PD9774b	8	116843661	T	C	-	-	-	-	-	-	33	0	0	83	11	13.25301205	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	0.987563156	0.987563156	1	0.0025	0.9975	0	0	2	5.66E-13	1	1	1	NA	NA	NA	NA
1351289	1206787363	PD9774b	8	117241612	G	C	AF130342.1	ENST00000505156	r.?	-	-	intronic	41	0	0	60	11	18.33333333	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	1.366129032	1.366129032	1	0	0.9975	0.0025	0	2	1.34E-14	1	1	1	NA	NA	NA	NA
1351289	1206787467	PD9774b	8	118231691	G	C	-	-	-	-	-	-	38	0	0	75	14	18.66666667	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	1.390967742	1.390967742	1	0	0.9925	0.0075	0	2	2.57E-18	1	1	1	NA	NA	NA	NA
1351289	1206787469	PD9774b	8	118278865	T	C	-	-	-	-	-	-	38	0	0	78	9	11.53846154	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	0.859801489	0.859801489	1	0	1	0	0	2	2.61E-10	1	1	1	NA	NA	NA	NA
1351289	1206787509	PD9774b	8	118810130	G	C	EXT1	CCDS6324.1	r.4715c>g	c.?	p.?	3'UTR variant	29	0	0	70	4	5.714285714	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	0.425806452	0.425806452	1	0.01875	0.98125	0	0	2	0.000440508	1	1	1	NA	NA	NA	NA
1351289	1206787612	PD9774b	8	119919941	G	C	-	-	-	-	-	-	40	0	0	68	6	8.823529412	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	0.657495256	0.657495256	1	0.01	0.99	0	0	2	1.31E-06	1	1	1	NA	NA	NA	NA
1351289	1206787789	PD9774b	8	121599412	G	C	SNTB1	CCDS6334.1	r.?	-	-	intronic	39	0	0	65	4	6.153846154	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	0.458560794	0.458560794	1	0.00625	0.99375	0	0	2	0.000331785	1	1	1	NA	NA	NA	NA
1351289	1206787952	PD9774b	8	123547754	G	C	-	-	-	-	-	-	27	0	0	58	6	10.34482759	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	0.770856507	0.770856507	1	0.00375	0.99625	0	0	2	5.06E-07	1	1	1	NA	NA	NA	NA
1351289	1206788329	PD9774b	8	127570086	G	C	FAM84B	CCDS6358.1	r.?	-	-	intronic	35	0	0	31	5	16.12903226	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	1.201873049	1.201873049	1	0.0025	0.995	0.0025	0	2	4.76E-07	1	1	1	NA	NA	NA	NA
1351289	1206788378	PD9774b	8	128115431	A	C	-	-	-	-	-	-	48	0	0	68	5	7.352941176	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	0.547912713	0.547912713	1	0.0075	0.9925	0	0	2	2.51E-05	1	1	1	NA	NA	NA	NA
1351289	1206788488	PD9774b	8	129301605	T	C	-	-	-	-	-	-	37	0	0	62	18	29.03225806	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	2.163371488	1.081685744	2	0	1	0	0	2	5.72E-27	1	1	1	NA	NA	NA	NA
1351289	1206788741	PD9774b	8	132102868	T	C	-	-	-	-	-	-	28	0	0	70	11	15.71428571	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	1.170967742	1.170967742	1	0	1	0	0	2	8.06E-14	1	1	1	NA	NA	NA	NA
1351289	1206788928	PD9774b	8	133946150	G	C	TG	CCDS34944.1	r.?	-	-	intronic	23	0	0	43	5	11.62790698	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	0.866466617	0.866466617	1	0	0.99875	0.00125	0	2	2.57E-06	1	1	1	NA	NA	NA	NA
1351289	1206789123	PD9774b	8	135829964	A	C	-	-	-	-	-	-	36	0	0	76	10	13.15789474	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	0.980475382	0.980475382	1	0.00125	0.99875	0	0	2	6.90E-12	1	1	1	NA	NA	NA	NA
1351289	1206789140	PD9774b	8	136000672	A	C	-	-	-	-	-	-	33	0	0	76	10	13.15789474	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	0.980475382	0.980475382	1	0.00125	0.99875	0	0	2	6.90E-12	1	1	1	NA	NA	NA	NA
1351289	1206789141	PD9774b	8	136022672	A	C	-	-	-	-	-	-	33	0	0	54	6	11.11111111	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	0.827956989	0.827956989	1	0	1	0	0	2	3.29E-07	1	1	1	NA	NA	NA	NA
1351289	1206789199	PD9774b	8	136686732	G	C	-	-	-	-	-	-	30	0	0	62	6	9.677419355	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	0.721123829	0.721123829	1	0.0025	0.9975	0	0	2	7.56E-07	1	1	1	NA	NA	NA	NA
1351289	1206789255	PD9774b	8	137392504	G	C	-	-	-	-	-	-	30	0	0	64	9	14.0625	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	1.047883065	1.047883065	1	0.0025	0.9975	0	0	2	4.20E-11	1	1	1	NA	NA	NA	NA
1351289	1206789278	PD9774b	8	137518028	A	C	-	-	-	-	-	-	29	0	0	61	4	6.557377049	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	0.488630354	0.488630354	1	0.00875	0.99125	0	0	2	0.000259828	1	1	1	NA	NA	NA	NA
1351289	1206789340	PD9774b	8	138066039	G	C	-	-	-	-	-	-	31	0	0	82	5	6.097560976	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	0.45436664	0.45436664	1	0.015	0.985	0	0	2	6.19E-05	1	1	1	NA	NA	NA	NA
1351289	1206789380	PD9774b	8	138277826	G	C	-	-	-	-	-	-	36	0	0	54	4	7.407407407	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	0.551971326	0.551971326	1	0.00625	0.99375	0	0	2	0.000161898	1	1	1	NA	NA	NA	NA
1351289	1206789668	PD9774b	8	140180020	A	C	-	-	-	-	-	-	35	0	0	71	17	23.94366197	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	1.784189005	0.892094502	2	0.00125	0.99875	0	0	2	6.12E-24	1	1	1	NA	NA	NA	NA
1351289	1206789689	PD9774b	8	140331338	G	C	-	-	-	-	-	-	33	0	0	68	6	8.823529412	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	0.657495256	0.657495256	1	0.0025	0.9975	0	0	2	1.31E-06	1	1	1	NA	NA	NA	NA
1351289	1206789767	PD9774b	8	141034541	G	C	TRAPPC9	CCDS34946.1	r.?	-	-	intronic	23	0	0	44	7	15.90909091	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	1.185483871	1.185483871	1	0	0.99875	0.00125	0	2	2.55E-09	1	1	1	NA	NA	NA	NA
1351289	1206789787	PD9774b	8	141222118	G	C	TRAPPC9	CCDS34946.1	r.?	-	-	intronic	24	0	0	72	10	13.88888889	0	0	NA	0	0	NA	4	4	0	1	NA	NA	NA	unphased	1.173835125	1.173835125	1	0	0.9975	0.0025	0	2	3.95E-12	1	1	1	NA	NA	NA	NA
1351289	1206789918	PD9774b	8	142244079	T	C	SLC45A4	ENST00000433583	r.?	-	-	intronic	28	0	0	85	7	8.235294118	0	0	NA	0	0	NA	4	4	0	1	NA	NA	NA	unphased	0.69601518	0.69601518	1	0.005	0.995	0	0	2	2.74E-07	1	1	1	NA	NA	NA	NA
1351289	1206790129	PD9774b	8	143456872	G	C	TSNARE1	CCDS6384.1	r.?	-	-	intronic	34	0	0	49	9	18.36734694	0	0	NA	0	0	NA	4	4	0	1	NA	NA	NA	unphased	1.552337064	1.552337064	1	0.00125	0.99125	0.0075	0	2	3.35E-12	1	1	1	NA	NA	NA	NA
1351289	1206790437	PD9774b	8	144859908	G	C	ENSG00000214733	ENST00000398876	r.?	-	-	intronic	38	0	0	72	8	11.11111111	0	0	NA	0	0	NA	4	4	0	1	NA	NA	NA	unphased	0.9390681	0.9390681	1	0.00125	0.99875	0	0	2	3.52E-09	1	1	1	NA	NA	NA	NA
1351289	1206790541	PD9774b	8	145786571	G	C	ENSG00000147799	CCDS34971.1	r.?	-	-	intronic	29	0	0	57	6	10.52631579	0	0	NA	0	0	NA	4	4	0	1	NA	NA	NA	unphased	0.889643463	0.889643463	1	0.00375	0.995	0.00125	0	2	4.56E-07	1	1	1	NA	NA	NA	NA
1351289	1206790768	PD9774b	9	987568	G	C	DMRT3	CCDS6443.1	r.?	-	-	intronic	43	0	0	53	4	7.547169811	0	0	NA	0	0	NA	1.641928061	1	0	0.358071939	2	0	0.641928061	unphased	0.459889884	0.716419661	0.641928061	0.00125	0.99875	0	0	2	0.000150502	1	1	1	NA	NA	NA	NA
1351289	1206790832	PD9774b	9	1798578	T	C	-	-	-	-	-	-	32	0	0	54	13	24.07407407	1	0	0	0	0	NA	1.641928061	1	0	0.358071939	2	0	0.641928061	unphased	1.466963566	1.466963566	1	0	0.99625	0.00375	0	2	1.12E-18	1	1	1	NA	NA	NA	NA
1351289	1206791016	PD9774b	9	4281730	G	C	GLIS3	CCDS43784.1	r.?	-	-	intronic	35	0	0	61	4	6.557377049	0	0	NA	0	0	NA	1.641928061	1	0	0.358071939	2	0	0.641928061	unphased	0.399576457	0.622462984	0.641928061	0.0025	0.99625	0.00125	0	2	0.000259828	1	1	1	NA	NA	NA	NA
1351289	1206791111	PD9774b	9	5336345	A	C	RLN1	CCDS6462.1	r.?	-	-	intronic	36	0	0	49	13	26.53061224	0	0	NA	0	0	NA	1.641928061	1	0	0.358071939	2	0	0.641928061	unphased	1.616653725	0.984606916	1.641928061	0	1	0	0	2	2.71E-19	1	1	1	NA	NA	NA	NA
1351289	1206791303	PD9774b	9	7572739	T	C	-	-	-	-	-	-	34	0	0	68	12	17.64705882	0	0	NA	0	0	NA	4	2	2	1	NA	NA	NA	unphased	1.491461101	1.491461101	1	0	0.98875	0.01125	0	2	1.37E-15	1	1	1	NA	NA	NA	NA
1351289	1206791352	PD9774b	9	8349797	G	C	PTPRD	CCDS43786.1	r.?	-	-	intronic	26	0	0	88	4	4.545454545	0	0	NA	0	0	NA	4	2	2	1	NA	NA	NA	unphased	0.384164223	0.384164223	1	0.0175	0.9825	0	0	2	0.001043312	1	1	1	NA	NA	NA	NA
1351289	1206791385	PD9774b	9	8707177	T	C	PTPRD	CCDS43786.1	r.?	-	-	intronic	37	1	2.702702703	68	21	30.88235294	0	0	NA	0	0	NA	4	2	2	1	NA	NA	NA	unphased	2.610056926	1.305028463	2	0	0.99375	0.00625	0	2	7.15E-32	0.169281299	1	1	NA	NA	NA	NA
1351289	1206791638	PD9774b	9	10846625	T	C	-	-	-	-	-	-	35	0	0	66	6	9.090909091	0	0	NA	0	0	NA	4	2	2	1	NA	NA	NA	unphased	0.768328446	0.768328446	1	0	1	0	0	2	1.10E-06	1	1	1	NA	NA	NA	NA
1351289	1206791641	PD9774b	9	10858609	A	C	-	-	-	-	-	-	30	0	0	70	10	14.28571429	0	0	NA	0	0	NA	4	2	2	1	NA	NA	NA	unphased	1.207373272	1.207373272	1	0	0.99625	0.00375	0	2	2.95E-12	1	1	1	NA	NA	NA	NA
1351289	1206791708	PD9774b	9	11574548	T	C	-	-	-	-	-	-	29	0	0	74	12	16.21621622	0	0	NA	0	0	NA	4	2	2	1	NA	NA	NA	unphased	1.370531822	1.370531822	1	0	0.995	0.005	0	2	4.02E-15	1	1	1	NA	NA	NA	NA
1351289	1206791712	PD9774b	9	11622122	T	C	-	-	-	-	-	-	39	0	0	71	15	21.12676056	0	0	NA	0	0	NA	4	2	2	1	NA	NA	NA	unphased	1.785552022	0.892776011	2	0	1	0	0	2	2.15E-20	1	1	1	NA	NA	NA	NA
1351289	1206791714	PD9774b	9	11626746	G	C	-	-	-	-	-	-	34	0	0	69	5	7.246376812	0	0	NA	0	0	NA	4	2	2	1	NA	NA	NA	unphased	0.612435718	0.612435718	1	0.005	0.995	0	0	2	2.69E-05	1	1	1	NA	NA	NA	NA
1351289	1206791827	PD9774b	9	12277816	G	C	-	-	-	-	-	-	39	0	0	84	9	10.71428571	0	0	NA	0	0	NA	4	2	2	1	NA	NA	NA	unphased	0.905529954	0.905529954	1	0.00125	0.99875	0	0	2	5.13E-10	1	1	1	NA	NA	NA	NA
1351289	1206791920	PD9774b	9	13145075	A	C	MPDZ	CCDS47951.1	r.?	-	-	intronic	41	0	0	76	6	7.894736842	0	0	NA	0	0	NA	4	2	2	1	NA	NA	NA	unphased	0.667232598	0.667232598	1	0.005	0.99375	0.00125	0	2	2.53E-06	1	1	1	NA	NA	NA	NA
1351289	1206792050	PD9774b	9	14392729	G	C	-	-	-	-	-	-	43	0	0	81	7	8.641975309	0	0	NA	0	0	NA	4	2	2	1	NA	NA	NA	unphased	0.7303863	0.7303863	1	0.00125	0.99875	0	0	2	1.97E-07	1	1	1	NA	NA	NA	NA
1351289	1206792138	PD9774b	9	15071145	T	C	-	-	-	-	-	-	42	0	0	75	17	22.66666667	0	0	NA	0	0	NA	4	2	2	1	NA	NA	NA	unphased	1.915698925	0.957849462	2	0	1	0	0	2	1.72E-23	1	1	1	NA	NA	NA	NA
1351289	1206792379	PD9774b	9	17060102	T	C	-	-	-	-	-	-	28	0	0	56	17	30.35714286	0	0	NA	0	0	NA	2.748462482	1	1	0.251537518	2	1	0.748462482	unphased	2.18573717	1.250090976	1.748462482	0	0.99625	0.00375	0	2	6.22E-26	1	1	1	NA	NA	NA	NA
1351289	1206792479	PD9774b	9	18394822	T	C	-	-	-	-	-	-	41	0	0	51	8	15.68627451	0	0	NA	0	0	NA	2.748462482	1	1	0.251537518	2	1	0.748462482	unphased	1.12942359	1.12942359	1	0	0.99875	0.00125	0	2	2.05E-10	1	1	1	NA	NA	NA	NA
1351289	1206792625	PD9774b	9	19610530	G	C	SLC24A2	CCDS6493.1	r.?	-	-	intronic	39	0	0	60	11	18.33333333	0	0	NA	0	0	NA	2.748462482	1	1	0.251537518	2	1	0.748462482	unphased	1.320013821	1.320013821	1	0	1	0	0	2	1.34E-14	1	1	1	NA	NA	NA	NA
1351289	1206792804	PD9774b	9	21699714	T	C	-	-	-	-	-	-	33	0	0	54	11	20.37037037	0	0	NA	0	0	NA	2.748462482	1	1	0.251537518	2	1	0.748462482	unphased	1.466682023	1.466682023	1	0	0.99	0.01	0	2	3.84E-15	1	1	1	NA	NA	NA	NA
1351289	1206792915	PD9774b	9	22792068	A	C	-	-	-	-	-	-	40	0	0	75	7	9.333333333	0	0	NA	0	0	NA	2.748462482	1	1	0.251537518	2	1	0.748462482	unphased	0.672007036	0.897849996	0.748462482	0.0025	0.9975	0	0	2	1.15E-07	1	1	1	NA	NA	NA	NA
1351289	1206792923	PD9774b	9	22849459	T	C	-	-	-	-	-	-	37	0	0	69	11	15.94202899	0	0	NA	0	0	NA	2.748462482	1	1	0.251537518	2	1	0.748462482	unphased	1.147838105	1.147838105	1	0.00125	0.9975	0.00125	0	2	6.82E-14	1	1	1	NA	NA	NA	NA
1351289	1206792984	PD9774b	9	23799785	G	C	ELAVL2	CCDS6515.1	r.?	-	-	intronic	37	0	0	61	13	21.31147541	0	0	NA	0	0	NA	2.748462482	1	1	0.251537518	2	1	0.748462482	unphased	1.534442295	1.534442295	1	0	0.9825	0.0175	0	2	6.41E-18	1	1	1	NA	NA	NA	NA
1351289	1206792998	PD9774b	9	23998067	T	C	-	-	-	-	-	-	35	0	0	60	10	16.66666667	0	0	NA	0	0	NA	2.748462482	1	1	0.251537518	2	1	0.748462482	unphased	1.200012564	1.200012564	1	0	0.9975	0.0025	0	2	5.86E-13	1	1	1	NA	NA	NA	NA
1351289	1206793035	PD9774b	9	24596870	A	C	-	-	-	-	-	-	30	0	0	63	4	6.349206349	0	0	NA	0	0	NA	2.748462482	1	1	0.251537518	2	1	0.748462482	unphased	0.457147643	0.61078231	0.748462482	0.00875	0.99125	0	0	2	0.000294233	1	1	1	NA	NA	NA	NA
1351289	1206793051	PD9774b	9	24835816	T	C	-	-	-	-	-	-	37	0	0	72	7	9.722222222	0	0	NA	0	0	NA	2.748462482	1	1	0.251537518	2	1	0.748462482	unphased	0.700007329	0.935260412	0.748462482	0.0025	0.9975	0	0	2	8.66E-08	1	1	1	NA	NA	NA	NA
1351289	1206793130	PD9774b	9	26006144	T	C	-	-	-	-	-	-	37	0	0	69	7	10.14492754	0	0	NA	0	0	NA	2.748462482	1	1	0.251537518	2	1	0.748462482	unphased	0.73044243	0.975923908	0.748462482	0	0.99875	0.00125	0	2	6.43E-08	1	1	1	NA	NA	NA	NA
1351289	1206793140	PD9774b	9	26161592	G	C	-	-	-	-	-	-	37	0	0	64	19	29.6875	0	0	NA	0	0	NA	2.748462482	1	1	0.251537518	2	1	0.748462482	unphased	2.13752238	1.22251544	1.748462482	0	0.99875	0.00125	0	2	1.34E-28	1	1	1	NA	NA	NA	NA
1351289	1206793303	PD9774b	9	27843750	T	C	-	-	-	-	-	-	37	0	0	64	17	26.5625	0	0	NA	0	0	NA	2.748462482	1	1	0.251537518	2	1	0.748462482	unphased	1.912520024	1.093829604	1.748462482	0	1	0	0	2	8.43E-25	1	1	1	NA	NA	NA	NA
1351289	1206793495	PD9774b	9	29676840	A	C	-	-	-	-	-	-	35	0	0	56	4	7.142857143	0	0	NA	0	0	NA	2.748462482	1	1	0.251537518	2	1	0.748462482	unphased	0.514291099	0.687130099	0.748462482	0.00125	0.9975	0.00125	0	2	0.000186538	1	1	1	NA	NA	NA	NA
1351289	1206793632	PD9774b	9	31112119	A	C	-	-	-	-	-	-	14	0	0	69	9	13.04347826	0	0	NA	0	0	NA	2.748462482	1	1	0.251537518	2	1	0.748462482	unphased	0.939140268	0.939140268	1	0.00125	0.99875	0	0	2	8.45E-11	1	1	1	NA	NA	NA	NA
1351289	1206793645	PD9774b	9	31438840	G	C	-	-	-	-	-	-	21	0	0	54	10	18.51851852	0	0	NA	0	0	NA	2.748462482	1	1	0.251537518	2	1	0.748462482	unphased	1.333347294	1.333347294	1	0.00125	0.9925	0.00625	0	2	1.91E-13	1	1	1	NA	NA	NA	NA
1351289	1206793773	PD9774b	9	33071245	G	C	SMU1	CCDS6534.1	r.?	-	-	intronic	39	0	0	75	4	5.333333333	0	0	NA	0	0	NA	2.748462482	1	1	0.251537518	2	1	0.748462482	unphased	0.384004021	0.51305714	0.748462482	0.00625	0.99375	0	0	2	0.000572493	1	1	1	NA	NA	NA	NA
1351289	1206794065	PD9774b	9	34238556	G	C	UBAP1	CCDS6550.1	r.?	-	-	intronic	31	0	0	57	14	24.56140351	0	0	NA	0	0	NA	2.748462482	1	1	0.251537518	2	1	0.748462482	unphased	1.768439568	1.011425516	1.748462482	0	1	0	0	2	3.84E-20	1	1	1	NA	NA	NA	NA
1351289	1206794134	PD9774b	9	35046425	A	C	C9orf131	CCDS6572.2	r.?	-	-	downstream	48	0	0	83	7	8.43373494	0	0	NA	0	0	NA	2.748462482	1	1	0.251537518	2	1	0.748462482	unphased	0.607235273	0.811310237	0.748462482	0.00375	0.995	0.00125	0	2	2.33E-07	1	1	1	NA	NA	NA	NA
1351289	1206794139	PD9774b	9	35088812	G	C	PIGO	CCDS6575.1	r.3942c>g	c.?	p.?	3'UTR variant	30	0	0	54	5	9.259259259	0	0	NA	0	0	NA	2.748462482	1	1	0.251537518	2	1	0.748462482	unphased	0.666673647	0.890724202	0.748462482	0.005	0.995	0	0	2	8.06E-06	1	1	1	NA	NA	NA	NA
1351289	1206794289	PD9774b	9	36562618	T	C	-	-	-	-	-	-	31	0	0	48	5	10.41666667	0	0	NA	0	0	NA	2.748462482	1	1	0.251537518	2	1	0.748462482	unphased	0.750007853	1.002064727	0.748462482	0	1	0	0	2	4.47E-06	1	1	1	NA	NA	NA	NA
1351289	1206794290	PD9774b	9	36562619	T	C	-	-	-	-	-	-	30	0	0	45	5	11.11111111	0	0	NA	0	0	NA	2.748462482	1	1	0.251537518	2	1	0.748462482	unphased	0.800008376	1.068869042	0.748462482	0.00125	0.9975	0.00125	0	2	3.23E-06	1	1	1	NA	NA	NA	NA
1351289	1206794596	PD9774b	9	42240581	A	C	-	-	-	-	-	-	12	0	0	21	3	14.28571429	0	0	NA	0	0	NA	2.748462482	1	1	0.251537518	2	1	0.748462482	unphased	1.028582198	1.028582198	1	0.00125	0.995	0.00375	0	2	0.000155401	1	1	1	NA	NA	NA	NA
1351289	1206795101	PD9774b	9	45083774	T	C	-	-	-	-	-	-	7	0	0	10	3	30	0	0	NA	0	0	NA	2.748462482	1	1	0.251537518	2	1	0.748462482	unphased	2.160022616	2.160022616	1	0	0.99625	0.00375	0	2	1.46E-05	1	1	1	NA	NA	NA	NA
1351289	1206803504	PD9774b	9	73971907	T	C	TRPM3	ENST00000357533	r.?	-	-	intronic	39	0	0	58	7	12.06896552	0	0	NA	0	0	NA	0.778367287	0	0	0.221632713	1	0	0.778367287	unphased	0.631204506	0.810934011	0.778367287	0.0025	0.99625	0.00125	0	2	1.88E-08	1	1	1	NA	NA	NA	NA
1351289	1206803718	PD9774b	9	76088265	G	C	-	-	-	-	-	-	37	0	0	58	5	8.620689655	0	0	NA	0	0	NA	0.778367287	0	0	0.221632713	1	0	0.778367287	unphased	0.450860361	0.579238579	0.778367287	0.00625	0.99375	0	0	2	1.15E-05	1	1	1	NA	NA	NA	NA
1351289	1206803984	PD9774b	9	79619803	A	C	-	-	-	-	-	-	31	0	0	40	6	15	0	0	NA	0	0	NA	0.778367287	0	0	0.221632713	1	0	0.778367287	unphased	0.784497028	1.007875128	0.778367287	0.00125	0.99875	0	0	2	5.18E-08	1	1	1	NA	NA	NA	NA
1351289	1206804006	PD9774b	9	79944880	A	C	VPS13A	CCDS6655.1	r.?	-	-	intronic	37	0	0	48	13	27.08333333	0	0	NA	0	0	NA	0.778367287	0	0	0.221632713	1	0	0.778367287	unphased	1.416452968	1.416452968	1	0	0.995	0.005	0	2	2.00E-19	1	1	1	NA	NA	NA	NA
1351289	1206804042	PD9774b	9	80296372	T	C	-	-	-	-	-	-	39	0	0	39	8	20.51282051	0	0	NA	0	0	NA	0.778367287	0	0	0.221632713	1	0	0.778367287	unphased	1.072816449	1.072816449	1	0	0.99875	0.00125	0	2	2.09E-11	1	1	1	NA	NA	NA	NA
1351289	1206804321	PD9774b	9	84051386	A	C	-	-	-	-	-	-	17	0	0	30	3	10	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.64516129	0.64516129	1	0.005	0.995	0	0	2	0.000458697	1	1	1	NA	NA	NA	NA
1351289	1206804666	PD9774b	9	88860105	G	C	C9orf153	CCDS35055.1	r.?	-	-	intronic	27	0	0	52	6	11.53846154	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.744416873	0.744416873	1	0.00625	0.99375	0	0	2	2.61E-07	1	1	1	NA	NA	NA	NA
1351289	1206804891	PD9774b	9	91477052	T	C	-	-	-	-	-	-	30	0	0	60	11	18.33333333	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.182795699	1.182795699	1	0	0.99875	0.00125	0	2	1.34E-14	1	1	1	NA	NA	NA	NA
1351289	1206804925	PD9774b	9	91939038	T	C	SECISBP2	CCDS6683.1	r.?	-	-	intronic	37	0	0	54	11	20.37037037	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.314217443	1.314217443	1	0	0.99625	0.00375	0	2	3.84E-15	1	1	1	NA	NA	NA	NA
1351289	1206804941	PD9774b	9	92246621	T	C	-	-	-	-	-	-	36	0	0	63	13	20.63492063	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.331285202	1.331285202	1	0	0.9975	0.0025	0	2	1.01E-17	1	1	1	NA	NA	NA	NA
1351289	1206804997	PD9774b	9	93432462	T	C	-	-	-	-	-	-	37	0	0	53	5	9.433962264	0	0	NA	0	0	NA	2.412438486	1	1	0.587561514	2	1	0.412438486	unphased	0.647552018	0.647552018	1	0.005	0.995	0	0	2	7.34E-06	1	1	1	NA	NA	NA	NA
1351289	1206805241	PD9774b	9	95684457	G	C	-	-	-	-	-	-	37	0	0	81	4	4.938271605	0	0	NA	0	0	NA	2.412438486	1	1	0.587561514	2	1	0.412438486	unphased	0.338965501	0.821857106	0.412438486	0.0025	0.9975	0	0	2	0.000765256	1	1	1	NA	NA	NA	NA
1351289	1206805250	PD9774b	9	95741410	G	C	FGD3	CCDS43849.1	r.?	-	-	intronic	26	0	0	46	9	19.56521739	0	0	NA	0	0	NA	2.412438486	1	1	0.587561514	2	1	0.412438486	unphased	1.342966576	1.342966576	1	0	0.99875	0.00125	0	2	1.82E-12	1	1	1	NA	NA	NA	NA
1351289	1206805353	PD9774b	9	96612290	G	C	-	-	-	-	-	-	29	0	0	72	5	6.944444444	0	0	NA	0	0	NA	2.412438486	1	1	0.587561514	2	1	0.412438486	unphased	0.476670235	1.155736556	0.412438486	0.00125	0.995	0.00375	0	2	3.31E-05	1	1	1	NA	NA	NA	NA
1351289	1206805500	PD9774b	9	98087477	G	C	-	-	-	-	-	-	35	0	0	68	5	7.352941176	0	0	NA	0	0	NA	2.412438486	1	1	0.587561514	2	1	0.412438486	unphased	0.504709661	1.223721059	0.412438486	0	0.9975	0.0025	0	2	2.51E-05	1	1	1	NA	NA	NA	NA
1351289	1206805783	PD9774b	9	101529999	G	C	ANKS6	CCDS43856.1	r.?	-	-	intronic	39	0	0	59	4	6.779661017	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.437397485	0.437397485	1	0.015	0.985	0	0	2	0.00022841	1	1	1	NA	NA	NA	NA
1351289	1206805786	PD9774b	9	101542296	G	C	ANKS6	CCDS43856.1	r.?	-	-	intronic	37	0	0	69	5	7.246376812	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.467508181	0.467508181	1	0.0125	0.9875	0	0	2	2.69E-05	1	1	1	NA	NA	NA	NA
1351289	1206805814	PD9774b	9	101919740	G	C	TGFBR1	CCDS6738.1	r.?	-	-	downstream	40	0	0	62	8	12.90322581	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.832466181	0.832466181	1	0	1	0	0	2	1.04E-09	1	1	1	NA	NA	NA	NA
1351289	1206805846	PD9774b	9	102422437	T	C	-	-	-	-	-	-	48	0	0	55	7	12.72727273	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.82111437	0.82111437	1	0	1	0	0	2	1.28E-08	1	1	1	NA	NA	NA	NA
1351289	1206806039	PD9774b	9	105092182	T	C	-	-	-	-	-	-	30	0	0	58	6	10.34482759	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.667408231	0.667408231	1	0.00625	0.99375	0	0	2	5.06E-07	1	1	1	NA	NA	NA	NA
1351289	1206806143	PD9774b	9	106429591	G	C	-	-	-	-	-	-	34	0	0	69	6	8.695652174	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.561009818	0.561009818	1	0.005	0.995	0	0	2	1.43E-06	1	1	1	NA	NA	NA	NA
1351289	1206806287	PD9774b	9	107857058	G	C	-	-	-	-	-	-	25	0	0	46	5	10.86956522	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.701262272	0.701262272	1	0.0025	0.9975	0	0	2	3.61E-06	1	1	1	NA	NA	NA	NA
1351289	1206806300	PD9774b	9	108015146	T	C	SLC44A1	CCDS6763.1	r.?	-	-	intronic	38	0	0	57	10	17.54385965	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.131861913	1.131861913	1	0.00125	0.9975	0.00125	0	2	3.40E-13	1	1	1	NA	NA	NA	NA
1351289	1206806637	PD9774b	9	112531267	G	C	PALM2	CCDS48002.1	r.?	-	-	intronic	44	0	0	52	6	11.53846154	0	0	NA	0	0	NA	1.288878388	1	0	0.711121612	2	0	0.288878388	unphased	0.66236438	0.66236438	1	0.00875	0.99125	0	0	2	2.61E-07	1	1	1	NA	NA	NA	NA
1351289	1206806689	PD9774b	9	113141125	G	C	SVEP1	CCDS48004.1	r.?	-	-	intronic	25	0	0	50	10	20	0	0	NA	0	0	NA	1.288878388	1	0	0.711121612	2	0	0.288878388	unphased	1.148098258	1.148098258	1	0	1	0	0	2	8.36E-14	1	1	1	NA	NA	NA	NA
1351289	1206806787	PD9774b	9	114291960	G	C	ZNF483	CCDS35106.1	r.?	-	-	intronic	34	0	0	57	6	10.52631579	0	0	NA	0	0	NA	1.288878388	1	0	0.711121612	2	0	0.288878388	unphased	0.604262241	0.604262241	1	0.0025	0.9975	0	0	2	4.56E-07	1	1	1	NA	NA	NA	NA
1351289	1206807245	PD9774b	9	119520988	T	C	ASTN2	CCDS48009.1	r.?	-	-	intronic	18	0	0	45	6	13.33333333	0	0	NA	0	0	NA	1.288878388	1	0	0.711121612	2	0	0.288878388	unphased	0.765398839	0.765398839	1	0.00375	0.99625	0	0	2	1.08E-07	1	1	1	NA	NA	NA	NA
1351289	1206807372	PD9774b	9	120917200	T	C	-	-	-	-	-	-	26	0	0	60	14	23.33333333	0	0	NA	0	0	NA	1.288878388	1	0	0.711121612	2	0	0.288878388	unphased	1.339447968	1.339447968	1	0	0.99375	0.00625	0	2	8.54E-20	1	1	1	NA	NA	NA	NA
1351289	1206807523	PD9774b	9	122929306	A	C	-	-	-	-	-	-	39	0	0	47	7	14.89361702	0	0	NA	0	0	NA	1.288878388	1	0	0.711121612	2	0	0.288878388	unphased	0.854966788	0.854966788	1	0.00125	0.99875	0	0	2	4.12E-09	1	1	1	NA	NA	NA	NA
1351289	1206807657	PD9774b	9	124703218	G	C	TTLL11	CCDS48012.1	r.?	-	-	intronic	31	0	0	44	14	31.81818182	0	0	NA	0	0	NA	1.288878388	1	0	0.711121612	2	0	0.288878388	unphased	1.826519956	1.417139098	1.288878388	0	0.99875	0.00125	0	2	6.10E-22	1	1	1	NA	NA	NA	NA
1351289	1206807665	PD9774b	9	124768784	T	C	TTLL11	CCDS48012.1	r.?	-	-	intronic	31	0	0	49	10	20.40816327	0	0	NA	0	0	NA	1.288878388	1	0	0.711121612	2	0	0.288878388	unphased	1.171528835	1.171528835	1	0	0.99625	0.00375	0	2	6.72E-14	1	1	1	NA	NA	NA	NA
1351289	1206808064	PD9774b	9	129395180	G	C	LMX1B	CCDS6866.1	r.?	-	-	intronic	33	0	0	44	4	9.090909091	0	0	NA	0	0	NA	1.288878388	1	0	0.711121612	2	0	0.288878388	unphased	0.521862845	0.521862845	1	0.00625	0.99375	0	0	2	7.23E-05	1	1	1	NA	NA	NA	NA
1351289	1206808586	PD9774b	9	134418470	G	C	-	-	-	-	-	-	29	0	0	49	10	20.40816327	0	0	NA	0	0	NA	1.288878388	1	0	0.711121612	2	0	0.288878388	unphased	1.171528835	1.171528835	1	0	0.99875	0.00125	0	2	6.72E-14	1	1	1	NA	NA	NA	NA
1351289	1206808937	PD9774b	9	138425431	G	C	-	-	-	-	-	-	32	0	0	53	6	11.32075472	0	0	NA	0	0	NA	1.288878388	1	0	0.711121612	2	0	0.288878388	unphased	0.649866939	0.649866939	1	0.0025	0.9975	0	0	2	2.93E-07	1	1	1	NA	NA	NA	NA
1351289	1206809054	PD9774b	9	139699052	G	C	KIAA1984	CCDS43906.1	r.800g>c	c.765G>C	p.T255T	silent	23	0	0	40	8	20	137	0	0	10	2	20	1.288878388	1	0	0.711121612	2	0	0.288878388	unphased	1.148098258	1.148098258	1	0.00125	0.99875	0	0	2	2.61E-11	1	0.001095391	1	NA	NA	NA	NA
1351289	1206809234	PD9774b	9	140790003	T	C	CACNA1B	ENST00000371372	r.?	-	-	intronic	27	0	0	44	8	18.18181818	0	0	NA	0	0	NA	1.288878388	1	0	0.711121612	2	0	0.288878388	unphased	1.043725689	1.043725689	1	0.0025	0.99625	0.00125	0	2	5.90E-11	1	1	1	NA	NA	NA	NA
1351289	1206809474	PD9774b	X	3071177	T	C	-	-	-	-	-	-	24	0	0	46	5	10.86956522	0	0	NA	0	0	NA	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	3.61E-06	1	1	1	NA	NA	NA	NA
1351289	1206809594	PD9774b	X	4455792	G	C	-	-	-	-	-	-	27	0	0	49	5	10.20408163	0	0	NA	0	0	NA	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	4.96E-06	1	1	1	NA	NA	NA	NA
1351289	1206810068	PD9774b	X	9694905	G	C	GPR143	CCDS14134.1	r.?	-	-	intronic	50	0	0	47	8	17.0212766	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.927934111	0.927934111	1	0.0025	0.9975	0	0	2	1.03E-10	1	1	1	NA	NA	NA	NA
1351289	1206810166	PD9774b	X	11430681	T	C	ARHGAP6	CCDS14140.1	r.?	-	-	intronic	32	0	0	49	6	12.24489796	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.667544437	0.667544437	1	0.0025	0.9975	0	0	2	1.82E-07	1	1	1	NA	NA	NA	NA
1351289	1206810189	PD9774b	X	12016674	G	C	-	-	-	-	-	-	24	0	0	53	11	20.75471698	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.131466829	1.131466829	1	0	1	0	0	2	3.07E-15	1	1	1	NA	NA	NA	NA
1351289	1206810242	PD9774b	X	12783653	G	C	-	-	-	-	-	-	38	0	0	49	7	14.28571429	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.778801843	0.778801843	1	0	0.99875	0.00125	0	2	5.58E-09	1	1	1	NA	NA	NA	NA
1351289	1206810320	PD9774b	X	14075066	G	C	-	-	-	-	-	-	40	0	0	49	6	12.24489796	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.667544437	0.667544437	1	0.00375	0.99625	0	0	2	1.82E-07	1	1	1	NA	NA	NA	NA
1351289	1206810354	PD9774b	X	14763112	T	C	-	-	-	-	-	-	30	0	0	39	11	28.20512821	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.537634409	1.537634409	1	0	0.9875	0.0125	0	2	7.20E-17	1	1	1	NA	NA	NA	NA
1351289	1206810594	PD9774b	X	18309528	T	C	SCML2	CCDS14185.1	r.?	-	-	intronic	32	0	0	47	5	10.63829787	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.579958819	0.579958819	1	0.00625	0.99375	0	0	2	4.02E-06	1	1	1	NA	NA	NA	NA
1351289	1206810735	PD9774b	X	20158625	T	C	EIF1AX	CCDS14196.1	r.?	-	-	intronic	42	0	0	46	7	15.2173913	0	0	NA	0	0	NA	1.637835256	1	0	0.362164744	1	1	0.637835256	unphased	0.926655155	0.926655155	1	0	1	0	0	2	3.53E-09	1	1	1	NA	NA	NA	NA
1351289	1206810749	PD9774b	X	20455742	T	C	-	-	-	-	-	-	31	0	0	53	7	13.20754717	0	0	NA	0	0	NA	1.637835256	1	0	0.362164744	1	1	0.637835256	unphased	0.804266738	0.804266738	1	0.005	0.995	0	0	2	9.85E-09	1	1	1	NA	NA	NA	NA
1351289	1206810811	PD9774b	X	21634174	A	C	CNKSR2	CCDS14198.1	r.?	-	-	intronic	34	0	0	46	12	26.08695652	0	0	NA	2	0	0	1.637835256	1	0	0.362164744	1	1	0.637835256	unphased	1.588551694	1.588551694	1	0	0.9875	0.0125	0	2	8.12E-18	1	1	1	NA	NA	NA	NA
1351289	1206810967	PD9774b	X	24050496	G	C	-	-	-	-	-	-	37	0	0	41	4	9.756097561	0	0	NA	0	0	NA	1.637835256	1	0	0.362164744	1	1	0.637835256	unphased	0.594092503	0.931419983	0.637835256	0.0025	0.99625	0.00125	0	2	5.46E-05	1	1	1	NA	NA	NA	NA
1351289	1206811091	PD9774b	X	25672442	T	C	-	-	-	-	-	-	42	0	0	51	6	11.76470588	0	0	NA	0	0	NA	1.637835256	1	0	0.362164744	1	1	0.637835256	unphased	0.716405666	1.12318292	0.637835256	0	1	0	0	2	2.32E-07	1	1	1	NA	NA	NA	NA
1351289	1206811226	PD9774b	X	27664697	G	C	-	-	-	-	-	-	29	0	0	56	7	12.5	0	0	NA	0	0	NA	1.637835256	1	0	0.362164744	1	1	0.637835256	unphased	0.76118102	1.193381853	0.637835256	0.00125	0.99875	0	0	2	1.46E-08	1	1	1	NA	NA	NA	NA
1351289	1206811771	PD9774b	X	36750221	T	C	-	-	-	-	-	-	40	0	0	39	4	10.25641026	0	0	NA	0	0	NA	1.415960809	1	0	0.584039191	1	1	0.415960809	unphased	0.601802432	0.601802432	1	0.00375	0.99625	0	0	2	4.47E-05	1	1	1	NA	NA	NA	NA
1351289	1206812062	PD9774b	X	41748661	G	C	CASK	CCDS48095.1	r.?	-	-	intronic	38	0	0	68	11	16.17647059	0	0	NA	0	0	NA	1.415960809	1	0	0.584039191	1	1	0.415960809	unphased	0.949166336	0.949166336	1	0.00125	0.99875	0	0	2	5.76E-14	1	1	1	NA	NA	NA	NA
1351289	1206812638	PD9774b	X	49751209	G	C	CLCN5	CCDS14328.1	r.?	-	-	intronic	38	0	0	50	5	10	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.64516129	0.64516129	1	0.00125	0.99875	0	0	2	5.49E-06	1	1	1	NA	NA	NA	NA
1351289	1206812848	PD9774b	X	53067188	G	C	-	-	-	-	-	-	37	0	0	53	4	7.547169811	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.486914181	0.486914181	1	0.01	0.99	0	0	2	0.000150502	1	1	1	NA	NA	NA	NA
1351289	1206814752	PD9774b	X	63903488	T	C	-	-	-	-	-	-	34	0	0	59	10	16.94915254	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.093493712	1.093493712	1	0	0.99875	0.00125	0	2	4.91E-13	1	1	1	NA	NA	NA	NA
1351289	1206814796	PD9774b	X	64864096	G	C	-	-	-	-	-	-	38	0	0	44	7	15.90909091	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.026392962	1.026392962	1	0.00125	0.99875	0	0	2	2.55E-09	1	1	1	NA	NA	NA	NA
1351289	1206814857	PD9774b	X	66040689	G	C	-	-	-	-	-	-	37	0	0	57	9	15.78947368	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.018675722	1.018675722	1	0	0.9975	0.0025	0	2	1.42E-11	1	1	1	NA	NA	NA	NA
1351289	1206814877	PD9774b	X	66608434	T	C	-	-	-	-	-	-	36	0	0	54	7	12.96296296	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.836320191	0.836320191	1	0.00375	0.99625	0	0	2	1.13E-08	1	1	1	NA	NA	NA	NA
1351289	1206815166	PD9774b	X	69940822	T	C	TEX11	CCDS35323.1	r.?	-	-	intronic	32	0	0	45	9	20	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.290322581	1.290322581	1	0	1	0	0	2	1.47E-12	1	1	1	NA	NA	NA	NA
1351289	1206815211	PD9774b	X	70254180	G	C	-	-	-	-	-	-	43	0	0	50	4	8	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.516129032	0.516129032	1	0.00375	0.99625	0	0	2	0.000119787	1	1	1	NA	NA	NA	NA
1351289	1206815307	PD9774b	X	71422440	G	C	ERCC6L	CCDS35329.1	r.?	-	-	downstream	36	0	0	63	10	15.87301587	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.02406554	1.02406554	1	0.00125	0.9975	0.00125	0	2	9.81E-13	1	1	1	NA	NA	NA	NA
1351289	1206815530	PD9774b	X	75601561	G	C	-	-	-	-	-	-	32	0	0	57	5	8.771929825	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.565930956	0.565930956	1	0.01125	0.98875	0	0	2	1.05E-05	1	1	1	NA	NA	NA	NA
1351289	1206815535	PD9774b	X	75687392	G	C	-	-	-	-	-	-	42	0	0	66	5	7.575757576	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.488758553	0.488758553	1	0.0075	0.9925	0	0	2	2.17E-05	1	1	1	NA	NA	NA	NA
1351289	1206815564	PD9774b	X	76234592	T	C	-	-	-	-	-	-	41	0	0	51	7	13.7254902	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.885515497	0.885515497	1	0.00125	0.9975	0.00125	0	2	7.46E-09	1	1	1	NA	NA	NA	NA
1351289	1206815583	PD9774b	X	76474585	G	C	-	-	-	-	-	-	36	0	0	34	4	11.76470588	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.759013283	0.759013283	1	0.00125	0.99875	0	0	2	2.57E-05	1	1	1	NA	NA	NA	NA
1351289	1206815764	PD9774b	X	79977000	G	C	BRWD3	CCDS14447.1	r.?	-	-	intronic	38	0	0	54	7	12.96296296	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	0.965949821	0.965949821	1	0.00125	0.99625	0.0025	0	2	1.13E-08	1	1	1	NA	NA	NA	NA
1351289	1206815796	PD9774b	X	80340413	A	C	-	-	-	-	-	-	31	0	0	50	4	8	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	0.596129032	0.596129032	1	0.0025	0.9975	0	0	2	0.000119787	1	1	1	NA	NA	NA	NA
1351289	1206816029	PD9774b	X	83899687	T	C	-	-	-	-	-	-	31	0	0	55	7	12.72727273	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.82111437	0.82111437	1	0.0025	0.9975	0	0	2	1.28E-08	1	1	1	NA	NA	NA	NA
1351289	1206816125	PD9774b	X	85480726	G	C	DACH2	CCDS48140.1	r.?	-	-	intronic	27	0	0	56	4	7.142857143	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.460829493	0.460829493	1	0.00875	0.99125	0	0	2	0.000186538	1	1	1	NA	NA	NA	NA
1351289	1206816172	PD9774b	X	86031000	T	C	DACH2	CCDS48140.1	r.?	-	-	intronic	30	0	0	54	5	9.259259259	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.597371565	0.597371565	1	0.00125	0.99875	0	0	2	8.06E-06	1	1	1	NA	NA	NA	NA
1351289	1206816296	PD9774b	X	87187159	G	C	-	-	-	-	-	-	36	0	0	54	10	18.51851852	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.19474313	1.19474313	1	0.0025	0.995	0.0025	0	2	1.91E-13	1	1	1	NA	NA	NA	NA
1351289	1206816314	PD9774b	X	87569289	T	C	-	-	-	-	-	-	37	0	0	44	6	13.63636364	0	0	NA	1	0	0	2	1	1	1	NA	NA	NA	unphased	0.879765396	0.879765396	1	0	1	0	0	2	9.37E-08	1	1	1	NA	NA	NA	NA
1351289	1206816583	PD9774b	X	90347996	G	C	-	-	-	-	-	-	26	0	0	46	4	8.695652174	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.561009818	0.561009818	1	0.005	0.995	0	0	2	8.62E-05	1	1	1	NA	NA	NA	NA
1351289	1206816705	PD9774b	X	92077522	G	C	-	-	-	-	-	-	26	0	0	44	5	11.36363636	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.73313783	0.73313783	1	0.00375	0.99625	0	0	2	2.88E-06	1	1	1	NA	NA	NA	NA
1351289	1206816751	PD9774b	X	92749943	A	C	-	-	-	-	-	-	41	0	0	56	9	16.07142857	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.036866359	1.036866359	1	0	0.99875	0.00125	0	2	1.20E-11	1	1	1	NA	NA	NA	NA
1351289	1206816798	PD9774b	X	93473076	G	C	-	-	-	-	-	-	38	0	0	59	7	11.86440678	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.765445599	0.765445599	1	0.0025	0.9975	0	0	2	2.12E-08	1	1	1	NA	NA	NA	NA
1351289	1206816823	PD9774b	X	93813913	T	C	-	-	-	-	-	-	41	0	0	65	12	18.46153846	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.191066998	1.191066998	1	0	0.9975	0.0025	0	2	7.70E-16	1	1	1	NA	NA	NA	NA
1351289	1206816835	PD9774b	X	93961000	T	C	-	-	-	-	-	-	33	0	0	47	6	12.76595745	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.823610158	0.823610158	1	0.00125	0.99875	0	0	2	1.41E-07	1	1	1	NA	NA	NA	NA
1351289	1206816937	PD9774b	X	95576392	G	C	-	-	-	-	-	-	42	0	0	57	4	7.01754386	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.452744765	0.452744765	1	0.01375	0.98625	0	0	2	0.000199821	1	1	1	NA	NA	NA	NA
1351289	1206816955	PD9774b	X	95855961	T	C	-	-	-	-	-	-	26	0	0	43	5	11.62790698	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.750187547	0.750187547	1	0.0025	0.99625	0.00125	0	2	2.57E-06	1	1	1	NA	NA	NA	NA
1351289	1206817161	PD9774b	X	98668385	A	C	-	-	-	-	-	-	24	0	0	44	5	11.36363636	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.73313783	0.73313783	1	0.00125	0.99875	0	0	2	2.88E-06	1	1	1	NA	NA	NA	NA
1351289	1206817170	PD9774b	X	99027174	T	C	-	-	-	-	-	-	40	0	0	60	6	10	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.64516129	0.64516129	1	0.00375	0.99625	0	0	2	6.21E-07	1	1	1	NA	NA	NA	NA
1351289	1206817338	PD9774b	X	100675350	A	C	-	-	-	-	-	-	31	0	0	59	6	10.16949153	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.656096227	0.656096227	1	0.00375	0.99625	0	0	2	5.61E-07	1	1	1	NA	NA	NA	NA
1351289	1206817352	PD9774b	X	100911139	G	C	ARMCX2	CCDS14490.1	r.1890c>g	c.1436C>G	p.S479C	missense	34	0	0	58	8	13.79310345	242	0	0	159	14	8.805031447	2	1	1	1	NA	NA	NA	unphased	0.889877642	0.889877642	1	0	1	0	0	2	5.99E-10	1	1.30E-13	1	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206817425	PD9774b	X	102339454	A	C	NXF3	CCDS14503.1	r.?	-	-	intronic	48	0	0	61	10	16.39344262	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.05764146	1.05764146	1	0	1	0	0	2	6.98E-13	1	1	1	NA	NA	NA	NA
1351289	1206817763	PD9774b	X	107973709	T	C	IRS4	CCDS14544.1	r.?	-	-	downstream	31	0	0	34	4	11.76470588	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.759013283	0.759013283	1	0.00625	0.99375	0	0	2	2.57E-05	1	1	1	NA	NA	NA	NA
1351289	1206817765	PD9774b	X	108031161	G	C	-	-	-	-	-	-	38	0	0	61	7	11.47540984	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.740349022	0.740349022	1	0.005	0.995	0	0	2	2.69E-08	1	1	1	NA	NA	NA	NA
1351289	1206817769	PD9774b	X	108071941	G	C	-	-	-	-	-	-	34	0	0	43	6	13.95348837	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.900225056	0.900225056	1	0	1	0	0	2	8.13E-08	1	1	1	NA	NA	NA	NA
1351289	1206817774	PD9774b	X	108150960	A	C	-	-	-	-	-	-	37	0	0	37	4	10.81081081	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.697471665	0.697471665	1	0.00375	0.99625	0	0	2	3.62E-05	1	1	1	NA	NA	NA	NA
1351289	1206817890	PD9774b	X	110111650	A	C	-	-	-	-	-	-	33	0	0	59	4	6.779661017	0	0	NA	0	0	NA	0.837155243	0	0	0.162844757	1	0	0.837155243	unphased	0.358560552	0.428308316	0.837155243	0.02	0.98	0	0	2	0.00022841	1	1	1	NA	NA	NA	NA
1351289	1206818605	PD9774b	X	121219698	G	C	-	-	-	-	-	-	34	0	0	37	6	16.21621622	0	0	NA	0	0	NA	0.396306917	0	0	0.603693083	1	0	0.396306917	unphased	0.78614916	0.78614916	1	0.00125	0.99875	0	0	2	3.18E-08	1	1	1	NA	NA	NA	NA
1351289	1206819117	PD9774b	X	130625395	G	C	-	-	-	-	-	-	39	0	0	41	5	12.19512195	0	0	NA	0	0	NA	0.396306917	0	0	0.603693083	1	0	0.396306917	unphased	0.591209734	0.591209734	1	0.00875	0.99125	0	0	2	2.02E-06	1	1	1	NA	NA	NA	NA
1351289	1206819182	PD9774b	X	132067407	G	C	HS6ST2	CCDS48169.1	r.?	-	-	intronic	39	0	0	48	4	8.333333333	0	0	NA	0	0	NA	0.396306917	0	0	0.603693083	1	0	0.396306917	unphased	0.403993318	1.019395073	0.396306917	0	0.99875	0.00125	0	2	0.000102016	1	1	1	NA	NA	NA	NA
1351289	1206819197	PD9774b	X	132378259	G	C	-	-	-	-	-	-	43	0	0	41	5	12.19512195	0	0	NA	0	0	NA	0.396306917	0	0	0.603693083	1	0	0.396306917	unphased	0.591209734	0.591209734	1	0.01	0.99	0	0	2	2.02E-06	1	1	1	NA	NA	NA	NA
1351289	1206819294	PD9774b	X	134139350	G	C	-	-	-	-	-	-	32	0	0	40	9	22.5	0	0	NA	0	0	NA	0.396306917	0	0	0.603693083	1	0	0.396306917	unphased	1.09078196	1.09078196	1	0	1	0	0	2	4.64E-13	1	1	1	NA	NA	NA	NA
1351289	1206819636	PD9774b	X	141054985	G	C	-	-	-	-	-	-	40	0	0	40	7	17.5	0	0	NA	0	0	NA	0.396306917	0	0	0.603693083	1	0	0.396306917	unphased	0.848385969	0.848385969	1	0.00125	0.99875	0	0	2	1.26E-09	1	1	1	NA	NA	NA	NA
1351289	1206819860	PD9774b	X	145316462	G	C	-	-	-	-	-	-	31	0	0	43	6	13.95348837	0	0	NA	0	0	NA	0.396306917	0	0	0.603693083	1	0	0.396306917	unphased	0.676453928	0.676453928	1	0.00375	0.99625	0	0	2	8.13E-08	1	1	1	NA	NA	NA	NA
1351289	1206819950	PD9774b	X	146694000	T	C	-	-	-	-	-	-	42	0	0	47	6	12.76595745	0	0	NA	0	0	NA	0.396306917	0	0	0.603693083	1	0	0.396306917	unphased	0.618883381	0.618883381	1	0.0075	0.9925	0	0	2	1.41E-07	1	1	1	NA	NA	NA	NA
1351289	1206820220	PD9774b	X	152118991	T	C	ZNF185	CCDS48184.1	r.?	-	-	intronic	36	0	0	51	7	13.7254902	0	0	NA	0	0	NA	0.396306917	0	0	0.603693083	1	0	0.396306917	unphased	0.66540076	0.66540076	1	0.00375	0.99625	0	0	2	7.46E-09	1	1	1	NA	NA	NA	NA
1351289	1206479347	PD9774b	1	1871649	A	G	KIAA1751	ENST00000493964	r.?	-	-	intronic	26	0	0	62	10	16.12903226	0	0	NA	0	0	NA	1.28043747	1	0	0.71956253	1	1	0.28043747	unphased	0.924524254	0.924524254	1	0.00125	0.99875	0	0	2	8.29E-13	1	1	1	NA	NA	NA	NA
1351289	1206480263	PD9774b	1	4562417	T	G	-	-	-	-	-	-	25	0	0	52	5	9.615384615	0	0	NA	0	0	NA	1.28043747	1	0	0.71956253	1	1	0.28043747	unphased	0.55115869	0.55115869	1	0.00625	0.99375	0	0	2	6.68E-06	1	1	1	NA	NA	NA	NA
1351289	1206481282	PD9774b	1	15262211	C	G	ENSG00000189337	CCDS152.2	r.?	-	-	intronic	24	0	0	45	5	11.11111111	0	0	NA	0	0	NA	0.401924708	0	0	0.598075292	1	0	0.401924708	unphased	0.539281957	1.341748705	0.401924708	0.00125	0.99625	0.0025	0	2	3.23E-06	1	1	1	NA	NA	NA	NA
1351289	1206482150	PD9774b	1	18635010	C	G	IGSF21	CCDS184.1	r.?	-	-	intronic	25	0	0	38	5	13.15789474	0	0	NA	0	0	NA	1.828511191	1	0	0.171488809	1	1	0.828511191	unphased	0.826332118	0.997369892	0.828511191	0.00125	0.99625	0.0025	0	2	1.37E-06	1	1	1	NA	NA	NA	NA
1351289	1206482275	PD9774b	1	20086727	C	G	TMCO4	CCDS198.1	r.?	-	-	intronic	30	0	0	52	4	7.692307692	2	0	0	0	0	NA	1.828511191	1	0	0.171488809	1	1	0.828511191	unphased	0.483086469	0.583077783	0.828511191	0.0025	0.99625	0.00125	0	2	0.000139698	1	1	1	NA	NA	NA	NA
1351289	1206482324	PD9774b	1	20637528	C	G	VWA5B1	CCDS44078.1	r.?	-	-	intronic	28	0	0	47	8	17.0212766	0	0	NA	0	0	NA	1.828511191	1	0	0.171488809	1	1	0.828511191	unphased	1.068957293	1.068957293	1	0.00125	0.99875	0	0	2	1.03E-10	1	1	1	NA	NA	NA	NA
1351289	1206482414	PD9774b	1	21663697	C	G	ECE1	CCDS44081.1	r.?	-	-	intronic	30	0	0	61	5	8.196721311	0	0	NA	0	0	NA	1.828511191	1	0	0.171488809	1	1	0.828511191	unphased	0.51476427	0.621312392	0.828511191	0.00375	0.99625	0	0	2	1.47E-05	1	1	1	NA	NA	NA	NA
1351289	1206482537	PD9774b	1	22571494	C	G	-	-	-	-	-	-	41	0	0	41	6	14.63414634	0	0	NA	0	0	NA	1.828511191	1	0	0.171488809	1	1	0.828511191	unphased	0.91904255	0.91904255	1	0.00125	0.99625	0.0025	0	2	6.05E-08	1	1	1	NA	NA	NA	NA
1351289	1206482594	PD9774b	1	23278280	C	G	ENSG00000215906	ENST00000401081	r.?	-	-	downstream	32	0	0	53	4	7.547169811	0	0	NA	0	0	NA	1.828511191	1	0	0.171488809	1	1	0.828511191	unphased	0.47397163	0.572076316	0.828511191	0.00375	0.99625	0	0	2	0.000150502	1	1	1	NA	NA	NA	NA
1351289	1206482799	PD9774b	1	25203255	A	G	-	-	-	-	-	-	25	0	0	44	8	18.18181818	0	0	NA	0	0	NA	1.828511191	1	0	0.171488809	1	1	0.828511191	unphased	1.141840744	1.141840744	1	0.00125	0.99875	0	0	2	5.90E-11	1	1	1	NA	NA	NA	NA
1351289	1206482941	PD9774b	1	27019779	C	G	ARID1A	CCDS285.1	r.?	-	-	upstream	39	0	0	69	5	7.246376812	0	0	NA	0	0	NA	1.828511191	1	0	0.171488809	1	1	0.828511191	unphased	0.455081456	0.549276173	0.828511191	0.005	0.995	0	0	2	2.69E-05	1	1	1	NA	NA	NA	NA
1351289	1206483104	PD9774b	1	28832683	A	G	RCC1	CCDS41295.1	r.?	-	-	intronic	32	0	0	53	8	15.09433962	0	0	NA	0	0	NA	1.828511191	1	0	0.171488809	1	1	0.828511191	unphased	0.94794326	0.94794326	1	0	1	0	0	2	2.83E-10	1	1	1	NA	NA	NA	NA
1351289	1206483152	PD9774b	1	29188216	C	G	OPRD1	CCDS329.1	r.?	-	-	intronic	25	0	0	51	10	19.60784314	0	0	NA	0	0	NA	1.828511191	1	0	0.171488809	1	1	0.828511191	unphased	1.231396881	1.231396881	1	0	0.99875	0.00125	0	2	1.04E-13	1	1	1	NA	NA	NA	NA
1351289	1206483444	PD9774b	1	32431599	T	G	-	-	-	-	-	-	29	0	0	34	3	8.823529412	0	0	NA	0	0	NA	1.828511191	1	0	0.171488809	1	1	0.828511191	unphased	0.554128597	0.668824516	0.828511191	0.0025	0.9975	0	0	2	0.000666058	1	1	1	NA	NA	NA	NA
1351289	1206483591	PD9774b	1	34257437	C	G	CSMD2	CCDS380.1	r.?	-	-	intronic	32	0	0	40	6	15	179	0	0	79	4	5.063291139	1.828511191	1	0	0.171488809	1	1	0.828511191	unphased	0.942018614	0.942018614	1	0.00125	0.99875	0	0	2	5.18E-08	1	0.000696582	1	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206483717	PD9774b	1	36117741	C	G	-	-	-	-	-	-	38	0	0	51	4	7.843137255	0	0	NA	0	0	NA	1.828511191	1	0	0.171488809	1	1	0.828511191	unphased	0.492558753	0.594510681	0.828511191	0.00125	0.9975	0.00125	0	2	0.000129466	1	1	1	NA	NA	NA	NA
1351289	1206483931	PD9774b	1	38351091	A	G	INPP5B	CCDS41306.1	r.?	-	-	intronic	36	0	0	47	4	8.510638298	0	0	NA	0	0	NA	1.828511191	1	0	0.171488809	1	1	0.828511191	unphased	0.534478646	0.645107335	0.828511191	0.00375	0.99625	0	0	2	9.39E-05	1	1	1	NA	NA	NA	NA
1351289	1206483979	PD9774b	1	39134541	A	G	-	-	-	-	-	-	30	0	0	58	13	22.4137931	0	0	NA	0	0	NA	1.828511191	1	0	0.171488809	1	1	0.828511191	unphased	1.407614021	1.407614021	1	0	0.99	0.01	0	2	3.12E-18	1	1	1	NA	NA	NA	NA
1351289	1206484199	PD9774b	1	41496486	C	G	SCMH1	CCDS30688.1	r.?	-	-	intronic	50	0	0	59	12	20.33898305	0	0	NA	0	0	NA	1.828511191	1	0	0.171488809	1	1	0.828511191	unphased	1.277313375	1.277313375	1	0	0.9975	0.0025	0	2	2.20E-16	1	1	1	NA	NA	NA	NA
1351289	1206484209	PD9774b	1	41635079	C	G	SCMH1	CCDS461.1	r.?	-	-	intronic	34	0	0	48	6	12.5	0	0	NA	0	0	NA	1.828511191	1	0	0.171488809	1	1	0.828511191	unphased	0.785015512	0.947501398	0.828511191	0.00125	0.99875	0	0	2	1.60E-07	1	1	1	NA	NA	NA	NA
1351289	1206484406	PD9774b	1	44574803	A	G	-	-	-	-	-	-	36	0	0	46	6	13.04347826	0	0	NA	0	0	NA	1.828511191	1	0	0.171488809	1	1	0.828511191	unphased	0.819146621	0.988697111	0.828511191	0	1	0	0	2	1.23E-07	1	1	1	NA	NA	NA	NA
1351289	1206484634	PD9774b	1	47363773	T	G	-	-	-	-	-	-	22	0	0	30	3	10	0	0	NA	0	0	NA	1.828511191	1	0	0.171488809	1	1	0.828511191	unphased	0.628012409	0.758001118	0.828511191	0.00375	0.99625	0	0	2	0.000458697	1	1	1	NA	NA	NA	NA
1351289	1206484654	PD9774b	1	47609723	C	G	CYP4A22	CCDS30707.1	r.?	-	-	intronic	41	0	0	57	6	10.52631579	0	0	NA	0	0	NA	1.828511191	1	0	0.171488809	1	1	0.828511191	unphased	0.661065694	0.797895914	0.828511191	0	1	0	0	2	4.56E-07	1	1	1	NA	NA	NA	NA
1351289	1206484823	PD9774b	1	50990858	C	G	FAF1	CCDS554.1	r.?	-	-	intronic	28	0	0	56	5	8.928571429	0	0	NA	0	0	NA	1.828511191	1	0	0.171488809	1	1	0.828511191	unphased	0.560725366	0.676786713	0.828511191	0.00375	0.99625	0	0	2	9.65E-06	1	1	1	NA	NA	NA	NA
1351289	1206484828	PD9774b	1	51070166	C	G	FAF1	CCDS554.1	r.?	-	-	intronic	36	0	0	59	5	8.474576271	0	0	NA	0	0	NA	1.828511191	1	0	0.171488809	1	1	0.828511191	unphased	0.532213906	0.642373829	0.828511191	0	1	0	0	2	1.25E-05	1	1	1	NA	NA	NA	NA
1351289	1206485305	PD9774b	1	58069662	C	G	DAB1	CCDS607.1	r.?	-	-	intronic	44	0	0	46	8	17.39130435	0	0	NA	0	0	NA	1.591961208	1	0	0.408038792	1	1	0.591961208	unphased	1.051056367	1.051056367	1	0	1	0	0	2	8.61E-11	1	1	1	NA	NA	NA	NA
1351289	1206485467	PD9774b	1	60550633	C	G	-	-	-	-	-	-	29	0	0	49	5	10.20408163	0	0	NA	0	0	NA	1.591961208	1	0	0.408038792	1	1	0.591961208	unphased	0.616691236	1.041776433	0.591961208	0	0.9975	0.0025	0	2	4.96E-06	1	1	1	NA	NA	NA	NA
1351289	1206485686	PD9774b	1	63360093	C	G	-	-	-	-	-	-	33	0	0	49	4	8.163265306	0	0	NA	0	0	NA	1.591961208	1	0	0.408038792	1	1	0.591961208	unphased	0.493352989	0.833421147	0.591961208	0.00125	0.99875	0	0	2	0.000110643	1	1	1	NA	NA	NA	NA
1351289	1206485691	PD9774b	1	63372610	C	G	-	-	-	-	-	-	30	0	0	60	11	18.33333333	0	0	NA	0	0	NA	1.591961208	1	0	0.408038792	1	1	0.591961208	unphased	1.107988587	1.107988587	1	0	1	0	0	2	1.34E-14	1	1	1	NA	NA	NA	NA
1351289	1206485767	PD9774b	1	64268641	A	G	ROR1	CCDS626.1	r.?	-	-	intronic	36	0	0	53	6	11.32075472	0	0	NA	0	0	NA	1.591961208	1	0	0.408038792	1	1	0.591961208	unphased	0.684178201	1.155782156	0.591961208	0.0025	0.99625	0.00125	0	2	2.93E-07	1	1	1	NA	NA	NA	NA
1351289	1206485812	PD9774b	1	64999184	C	G	CACHD1	CCDS628.2	r.?	-	-	intronic	39	0	0	59	7	11.86440678	0	0	NA	0	0	NA	1.591961208	1	0	0.408038792	1	1	0.591961208	unphased	0.717034217	1.211285819	0.591961208	0	0.9975	0.0025	0	2	2.12E-08	1	1	1	NA	NA	NA	NA
1351289	1206485883	PD9774b	1	65892189	C	G	LEPR	CCDS631.1	r.?	-	-	intronic	27	0	0	48	9	18.75	0	0	NA	0	0	NA	1.591961208	1	0	0.408038792	1	1	0.591961208	unphased	1.133170146	1.133170146	1	0.00125	0.9975	0.00125	0	2	2.75E-12	1	1	1	NA	NA	NA	NA
1351289	1206485951	PD9774b	1	66910319	A	G	-	-	-	-	-	-	39	0	0	61	8	13.1147541	0	0	NA	0	0	NA	1.591961208	1	0	0.408038792	1	1	0.591961208	unphased	0.792599883	0.792599883	1	0.00125	0.99875	0	0	2	9.09E-10	1	1	1	NA	NA	NA	NA
1351289	1206485960	PD9774b	1	67082799	C	G	SGIP1	CCDS30744.1	r.?	-	-	intronic	44	0	0	51	14	27.45098039	0	0	NA	0	0	NA	1.591961208	1	0	0.408038792	1	1	0.591961208	unphased	1.659020344	1.659020344	1	0	0.97	0.03	0	2	6.64E-21	1	1	1	NA	NA	NA	NA
1351289	1206486080	PD9774b	1	68631020	C	G	WLS	CCDS642.1	r.?	-	-	intronic	31	0	0	42	7	16.66666667	0	0	NA	0	0	NA	1.591961208	1	0	0.408038792	1	1	0.591961208	unphased	1.007262352	1.007262352	1	0	0.99875	0.00125	0	2	1.81E-09	1	1	1	NA	NA	NA	NA
1351289	1206486096	PD9774b	1	68900606	C	G	RPE65	CCDS643.1	r.?	-	-	intronic	39	0	0	60	6	10	0	0	NA	0	0	NA	1.591961208	1	0	0.408038792	1	1	0.591961208	unphased	0.604357411	1.020940904	0.591961208	0	0.99875	0.00125	0	2	6.21E-07	1	1	1	NA	NA	NA	NA
1351289	1206486131	PD9774b	1	69262710	A	G	-	-	-	-	-	-	41	0	0	51	11	21.56862745	0	0	NA	0	0	NA	1.591961208	1	0	0.408038792	1	1	0.591961208	unphased	1.303515985	1.303515985	1	0	0.9925	0.0075	0	2	1.94E-15	1	1	1	NA	NA	NA	NA
1351289	1206486138	PD9774b	1	69465402	A	G	-	-	-	-	-	-	44	0	0	50	6	12	0	0	NA	0	0	NA	1.591961208	1	0	0.408038792	1	1	0.591961208	unphased	0.725228893	1.225129085	0.591961208	0	0.995	0.005	0	2	2.06E-07	1	1	1	NA	NA	NA	NA
1351289	1206486151	PD9774b	1	69664406	A	G	-	-	-	-	-	-	52	0	0	78	14	17.94871795	0	0	NA	0	0	NA	1.591961208	1	0	0.408038792	1	1	0.591961208	unphased	1.084744071	1.084744071	1	0	0.99875	0.00125	0	2	4.63E-18	1	1	1	NA	NA	NA	NA
1351289	1206486164	PD9774b	1	70022418	A	G	-	-	-	-	-	-	29	0	0	52	4	7.692307692	0	0	NA	0	0	NA	1.591961208	1	0	0.408038792	1	1	0.591961208	unphased	0.464890316	0.785339157	0.591961208	0.0025	0.9975	0	0	2	0.000139698	1	1	1	NA	NA	NA	NA
1351289	1206486244	PD9774b	1	71002988	C	G	-	-	-	-	-	-	36	0	0	55	6	10.90909091	0	0	NA	0	0	NA	1.591961208	1	0	0.408038792	1	1	0.591961208	unphased	0.659298994	1.113753714	0.591961208	0	0.99875	0.00125	0	2	3.67E-07	1	1	1	NA	NA	NA	NA
1351289	1206486325	PD9774b	1	72341290	A	G	NEGR1	CCDS661.1	r.?	-	-	intronic	32	0	0	39	6	15.38461538	0	0	NA	0	0	NA	1.591961208	1	0	0.408038792	1	1	0.591961208	unphased	0.929780632	0.929780632	1	0.0025	0.99625	0.00125	0	2	4.43E-08	1	1	1	NA	NA	NA	NA
1351289	1206486389	PD9774b	1	73104240	C	G	-	-	-	-	-	-	51	0	0	55	5	9.090909091	0	0	NA	0	0	NA	1.591961208	1	0	0.408038792	1	1	0.591961208	unphased	0.549415828	0.928128095	0.591961208	0.005	0.99375	0.00125	0	2	8.83E-06	1	1	1	NA	NA	NA	NA
1351289	1206486922	PD9774b	1	80289697	T	G	-	-	-	-	-	-	39	0	0	53	7	13.20754717	0	0	NA	0	0	NA	1.591961208	1	0	0.408038792	1	1	0.591961208	unphased	0.798207901	0.798207901	1	0.00375	0.99625	0	0	2	9.85E-09	1	1	1	NA	NA	NA	NA
1351289	1206486957	PD9774b	1	80618602	C	G	-	-	-	-	-	-	27	0	0	53	10	18.86792453	0	0	NA	0	0	NA	1.591961208	1	0	0.408038792	1	1	0.591961208	unphased	1.140297002	1.140297002	1	0.00125	0.9975	0.00125	0	2	1.57E-13	1	1	1	NA	NA	NA	NA
1351289	1206487032	PD9774b	1	81798858	C	G	LPHN2	ENST00000370728	r.?	-	-	intronic	33	0	0	45	6	13.33333333	0	0	NA	0	0	NA	1.591961208	1	0	0.408038792	1	1	0.591961208	unphased	0.805809881	0.805809881	1	0.0025	0.9975	0	0	2	1.08E-07	1	1	1	NA	NA	NA	NA
1351289	1206487139	PD9774b	1	82851393	C	G	-	-	-	-	-	-	37	0	0	49	4	8.163265306	0	0	NA	0	0	NA	1.591961208	1	0	0.408038792	1	1	0.591961208	unphased	0.493352989	0.833421147	0.591961208	0.00125	0.99875	0	0	2	0.000110643	1	1	1	NA	NA	NA	NA
1351289	1206487218	PD9774b	1	83854510	C	G	-	-	-	-	-	-	23	0	0	29	6	20.68965517	0	0	NA	0	0	NA	1.591961208	1	0	0.408038792	1	1	0.591961208	unphased	1.250394644	1.250394644	1	0	0.99875	0.00125	0	2	6.72E-09	1	1	1	NA	NA	NA	NA
1351289	1206487258	PD9774b	1	84248183	C	G	-	-	-	-	-	-	34	0	0	60	4	6.666666667	0	0	NA	0	0	NA	1.591961208	1	0	0.408038792	1	1	0.591961208	unphased	0.402904941	0.68062727	0.591961208	0.00125	0.99875	0	0	2	0.000243755	1	1	1	NA	NA	NA	NA
1351289	1206487453	PD9774b	1	86091001	C	G	-	-	-	-	-	-	36	0	0	57	8	14.03508772	0	0	NA	0	0	NA	1.591961208	1	0	0.408038792	1	1	0.591961208	unphased	0.848220928	0.848220928	1	0	1	0	0	2	5.19E-10	1	1	1	NA	NA	NA	NA
1351289	1206487583	PD9774b	1	87936714	C	G	-	-	-	-	-	-	22	0	0	54	4	7.407407407	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.329749104	0.329749104	1	0.04875	0.95125	0	0	2	0.000161898	1	1	1	NA	NA	NA	NA
1351289	1206487597	PD9774b	1	88199731	T	G	-	-	-	-	-	-	35	0	0	45	4	8.888888889	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.395698925	0.395698925	1	0.02125	0.97875	0	0	2	7.91E-05	1	1	1	NA	NA	NA	NA
1351289	1206487739	PD9774b	1	90467507	T	G	ZNF326	CCDS727.1	r.?	-	-	intronic	34	0	0	49	4	8.163265306	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.363396972	0.363396972	1	0.0275	0.9725	0	0	2	0.000110643	1	1	1	NA	NA	NA	NA
1351289	1206487845	PD9774b	1	92051993	A	G	-	-	-	-	-	-	34	0	0	51	4	7.843137255	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.34914611	0.34914611	1	0.0375	0.9625	0	0	2	0.000129466	1	1	1	NA	NA	NA	NA
1351289	1206487972	PD9774b	1	93598095	C	G	MTF2	CCDS742.1	r.?	-	-	intronic	31	0	0	64	7	10.9375	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.486895161	0.486895161	1	0.01375	0.98625	0	0	2	3.78E-08	1	1	1	NA	NA	NA	NA
1351289	1206487987	PD9774b	1	93899807	T	G	-	-	-	-	-	-	27	0	0	47	5	10.63829787	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.473575841	0.473575841	1	0.00625	0.99375	0	0	2	4.02E-06	1	1	1	NA	NA	NA	NA
1351289	1206488234	PD9774b	1	97011047	A	G	-	-	-	-	-	-	22	0	0	39	4	10.25641026	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.456575682	0.456575682	1	0.00875	0.99125	0	0	2	4.47E-05	1	1	1	NA	NA	NA	NA
1351289	1206488559	PD9774b	1	101590637	C	G	-	-	-	-	-	-	48	0	0	61	4	6.557377049	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.291909043	0.291909043	1	0.09375	0.90625	0	0	2	0.000259828	1	1	1	NA	NA	NA	NA
1351289	1206488774	PD9774b	1	104383834	C	G	-	-	-	-	-	-	34	0	0	54	9	16.66666667	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.741935484	0.741935484	1	0.0025	0.9975	0	0	2	8.48E-12	1	1	1	NA	NA	NA	NA
1351289	1206489129	PD9774b	1	108764946	C	G	NBPF4	CCDS44182.1	r.?	-	-	downstream	28	0	0	39	5	12.82051282	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.570719603	0.570719603	1	0.00875	0.99125	0	0	2	1.56E-06	1	1	1	NA	NA	NA	NA
1351289	1206489247	PD9774b	1	110542019	A	G	AHCYL1	CCDS818.1	r.?	-	-	intronic	30	0	0	55	6	10.90909091	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.485630499	0.485630499	1	0.01625	0.98375	0	0	2	3.67E-07	1	1	1	NA	NA	NA	NA
1351289	1206489652	PD9774b	1	115419116	A	G	SYCP1	CCDS879.1	r.?	-	-	intronic	24	0	0	54	5	9.259259259	0	0	NA	0	0	NA	1.624914468	1	0	0.375085532	1	1	0.624914468	unphased	0.562641423	0.900349491	0.624914468	0.00125	0.99875	0	0	2	8.06E-06	1	1	1	NA	NA	NA	NA
1351289	1206500771	PD9774b	1	144675799	A	G	-	-	-	-	-	-	49	0	0	93	7	7.52688172	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.485605272	0.485605272	1	0.015	0.985	0	0	2	5.08E-07	1	1	1	NA	NA	NA	NA
1351289	1206500942	PD9774b	1	144963129	A	G	PDE4DIP	CCDS30824.1	r.?	-	-	intronic	69	0	0	110	6	5.454545455	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.351906158	0.351906158	1	0.1025	0.8975	0	0	2	2.15E-05	1	1	1	NA	NA	NA	NA
1351289	1206503787	PD9774b	1	150723688	T	G	CTSS	CCDS968.1	r.?	-	-	intronic	32	0	0	53	4	7.547169811	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.486914181	0.486914181	1	0.0125	0.9875	0	0	2	0.000150502	1	1	1	NA	NA	NA	NA
1351289	1206503840	PD9774b	1	151174813	C	G	PIP5K1A	CCDS990.1	r.?	-	-	intronic	24	0	0	77	8	10.38961039	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.670297444	0.670297444	1	0.0025	0.9975	0	0	2	6.05E-09	1	1	1	NA	NA	NA	NA
1351289	1206504036	PD9774b	1	153066853	C	G	SPRR2E	CCDS30866.1	r.?	-	-	intronic	52	0	0	72	12	16.66666667	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.075268817	1.075268817	1	0	1	0	0	2	2.84E-15	1	1	1	NA	NA	NA	NA
1351289	1206504147	PD9774b	1	154305612	C	G	ATP8B2	CCDS1066.1	r.?	-	-	intronic	18	0	0	51	6	11.76470588	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.759013283	0.759013283	1	0.00125	0.99875	0	0	2	2.32E-07	1	1	1	NA	NA	NA	NA
1351289	1206504150	PD9774b	1	154324505	C	G	ATP8B2	CCDS1066.1	r.?	-	-	downstream	26	0	0	59	8	13.55932203	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.87479497	0.87479497	1	0.00125	0.99875	0	0	2	6.90E-10	1	1	1	NA	NA	NA	NA
1351289	1206504161	PD9774b	1	154392080	C	G	IL6R	CCDS1067.1	r.?	-	-	intronic	41	0	0	36	6	16.66666667	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.075268817	1.075268817	1	0.00125	0.99625	0.0025	0	2	2.68E-08	1	1	1	NA	NA	NA	NA
1351289	1206504202	PD9774b	1	154939328	C	G	SHC1	CCDS44233.1	r.?	-	-	intronic	44	0	0	55	9	16.36363636	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.055718475	1.055718475	1	0.00125	0.99875	0	0	2	1.01E-11	1	1	1	NA	NA	NA	NA
1351289	1206504546	PD9774b	1	158987595	A	G	IFI16	CCDS1180.3	r.?	-	-	intronic	34	0	0	43	6	13.95348837	0	0	NA	0	0	NA	1.428392334	1	0	0.571607666	1	1	0.428392334	unphased	0.820465847	0.820465847	1	0	1	0	0	2	8.13E-08	1	1	1	NA	NA	NA	NA
1351289	1206504745	PD9774b	1	161003148	A	G	F11R	CCDS1213.1	r.?	-	-	intronic	34	0	0	52	10	19.23076923	0	0	NA	0	0	NA	1.428392334	1	0	0.571607666	1	1	0.428392334	unphased	1.130770238	1.130770238	1	0	0.9975	0.0025	0	2	1.28E-13	1	1	1	NA	NA	NA	NA
1351289	1206504830	PD9774b	1	161706397	A	G	-	-	-	-	-	-	31	0	0	54	9	16.66666667	0	0	NA	0	0	NA	1.428392334	1	0	0.571607666	1	1	0.428392334	unphased	0.980000873	0.980000873	1	0	1	0	0	2	8.48E-12	1	1	1	NA	NA	NA	NA
1351289	1206504948	PD9774b	1	163052106	T	G	-	-	-	-	-	-	41	0	0	74	4	5.405405405	0	0	NA	1	0	0	1.428392334	1	0	0.571607666	1	1	0.428392334	unphased	0.317838121	0.741932327	0.428392334	0.00375	0.99625	0	0	2	0.00054411	1	1	1	NA	NA	NA	NA
1351289	1206505106	PD9774b	1	165407101	A	G	RXRG	CCDS1248.1	r.?	-	-	intronic	34	0	0	64	7	10.9375	0	0	NA	0	0	NA	1.428392334	1	0	0.571607666	1	1	0.428392334	unphased	0.643125573	0.643125573	1	0.00125	0.99875	0	0	2	3.78E-08	1	1	1	NA	NA	NA	NA
1351289	1206505150	PD9774b	1	165934924	C	G	-	-	-	-	-	-	45	0	0	47	5	10.63829787	0	0	NA	0	0	NA	1.428392334	1	0	0.571607666	1	1	0.428392334	unphased	0.625532472	0.625532472	1	0.0025	0.9975	0	0	2	4.02E-06	1	1	1	NA	NA	NA	NA
1351289	1206505338	PD9774b	1	168214840	T	G	SFT2D2	CCDS1271.1	r.?	-	-	downstream	33	0	0	44	3	6.818181818	0	0	NA	0	0	NA	1.428392334	1	0	0.571607666	1	1	0.428392334	unphased	0.400909448	0.935846458	0.428392334	0.00125	0.99625	0.0025	0	2	0.00142027	1	1	1	NA	NA	NA	NA
1351289	1206505364	PD9774b	1	168802364	T	G	-	-	-	-	-	-	31	0	0	52	4	7.692307692	0	0	NA	0	0	NA	1.428392334	1	0	0.571607666	1	1	0.428392334	unphased	0.452308095	1.055826773	0.428392334	0	0.9975	0.0025	0	2	0.000139698	1	1	1	NA	NA	NA	NA
1351289	1206505376	PD9774b	1	169025822	C	G	-	-	-	-	-	-	40	0	0	70	10	14.28571429	0	0	NA	0	0	NA	1.428392334	1	0	0.571607666	1	1	0.428392334	unphased	0.840000748	0.840000748	1	0.00375	0.995	0.00125	0	2	2.95E-12	1	1	1	NA	NA	NA	NA
1351289	1206505469	PD9774b	1	170166019	T	G	-	-	-	-	-	-	40	0	0	52	5	9.615384615	0	0	NA	0	0	NA	1.428392334	1	0	0.571607666	1	1	0.428392334	unphased	0.565385119	1.319783466	0.428392334	0	0.995	0.005	0	2	6.68E-06	1	1	1	NA	NA	NA	NA
1351289	1206505815	PD9774b	1	175526793	C	G	TNR	CCDS1318.1	r.?	-	-	intronic	24	0	0	32	4	12.5	0	0	NA	0	0	NA	1.57042276	1	0	0.42957724	1	1	0.57042276	unphased	0.752754458	0.752754458	1	0.0025	0.9975	0	0	2	2.01E-05	1	1	1	NA	NA	NA	NA
1351289	1206505816	PD9774b	1	175586391	T	G	TNR	CCDS1318.1	r.?	-	-	intronic	44	0	0	49	5	10.20408163	0	0	NA	0	0	NA	1.57042276	1	0	0.42957724	1	1	0.57042276	unphased	0.614493435	1.077259671	0.57042276	0.00125	0.9975	0.00125	0	2	4.96E-06	1	1	1	NA	NA	NA	NA
1351289	1206505868	PD9774b	1	176183973	C	G	-	-	-	-	-	-	33	0	0	57	6	10.52631579	0	0	NA	0	0	NA	1.57042276	1	0	0.42957724	1	1	0.57042276	unphased	0.633898491	1.111278398	0.57042276	0.00125	0.99875	0	0	2	4.56E-07	1	1	1	NA	NA	NA	NA
1351289	1206506040	PD9774b	1	179039066	A	G	FAM20B	CCDS1328.1	r.?	-	-	intronic	33	0	0	50	5	10	0	0	NA	0	0	NA	1.57042276	1	0	0.42957724	1	1	0.57042276	unphased	0.602203566	1.055714478	0.57042276	0	0.99875	0.00125	0	2	5.49E-06	1	1	1	NA	NA	NA	NA
1351289	1206506049	PD9774b	1	179115732	A	G	ABL2	CCDS41441.1	r.?	-	-	upstream	35	0	0	52	5	9.615384615	0	0	NA	0	0	NA	1.57042276	1	0	0.42957724	1	1	0.57042276	unphased	0.579041891	1.015110075	0.57042276	0.00125	0.99875	0	0	2	6.68E-06	1	1	1	NA	NA	NA	NA
1351289	1206506073	PD9774b	1	179250534	T	G	-	-	-	-	-	-	30	0	0	51	9	17.64705882	0	0	NA	0	0	NA	1.57042276	1	0	0.42957724	1	1	0.57042276	unphased	1.062712176	1.062712176	1	0	1	0	0	2	4.92E-12	1	1	1	NA	NA	NA	NA
1351289	1206506274	PD9774b	1	181647376	C	G	CACNA1E	ENST00000367573	r.?	-	-	intronic	22	0	0	53	4	7.547169811	0	0	NA	0	0	NA	1.57042276	1	0	0.42957724	1	1	0.57042276	unphased	0.454493258	0.796765644	0.57042276	0.00375	0.99625	0	0	2	0.000150502	1	1	1	NA	NA	NA	NA
1351289	1206506429	PD9774b	1	183436497	A	G	-	-	-	-	-	-	43	0	0	50	5	10	0	0	NA	0	0	NA	1.57042276	1	0	0.42957724	1	1	0.57042276	unphased	0.602203566	1.055714478	0.57042276	0.00125	0.99625	0.0025	0	2	5.49E-06	1	1	1	NA	NA	NA	NA
1351289	1206506560	PD9774b	1	185659089	C	G	-	-	-	-	-	-	39	0	0	62	5	8.064516129	0	0	NA	0	0	NA	1.57042276	1	0	0.42957724	1	1	0.57042276	unphased	0.485648037	0.851382644	0.57042276	0	0.99875	0.00125	0	2	1.60E-05	1	1	1	NA	NA	NA	NA
1351289	1206506688	PD9774b	1	187406459	T	G	-	-	-	-	-	-	43	0	0	53	6	11.32075472	0	0	NA	0	0	NA	1.57042276	1	0	0.42957724	1	1	0.57042276	unphased	0.681739886	1.195148466	0.57042276	0	0.9975	0.0025	0	2	2.93E-07	1	1	1	NA	NA	NA	NA
1351289	1206506766	PD9774b	1	188081871	A	G	-	-	-	-	-	-	29	0	0	45	5	11.11111111	0	0	NA	0	0	NA	1.57042276	1	0	0.42957724	1	1	0.57042276	unphased	0.669115074	1.173016087	0.57042276	0.00125	0.99875	0	0	2	3.23E-06	1	1	1	NA	NA	NA	NA
1351289	1206506830	PD9774b	1	188523124	T	G	-	-	-	-	-	-	36	0	0	61	5	8.196721311	0	0	NA	0	0	NA	1.57042276	1	0	0.42957724	1	1	0.57042276	unphased	0.493609481	0.865339736	0.57042276	0.0025	0.995	0.0025	0	2	1.47E-05	1	1	1	NA	NA	NA	NA
1351289	1206507072	PD9774b	1	192531821	A	G	-	-	-	-	-	-	30	0	0	68	7	10.29411765	0	0	NA	0	0	NA	1.57042276	1	0	0.42957724	1	1	0.57042276	unphased	0.619915436	1.086764904	0.57042276	0	1	0	0	2	5.80E-08	1	1	1	NA	NA	NA	NA
1351289	1206507247	PD9774b	1	194674149	A	G	-	-	-	-	-	-	29	0	0	34	8	23.52941176	0	0	NA	0	0	NA	1.57042276	1	0	0.42957724	1	1	0.57042276	unphased	1.416949568	1.416949568	1	0	0.99625	0.00375	0	2	6.32E-12	1	1	1	NA	NA	NA	NA
1351289	1206507528	PD9774b	1	198100389	A	G	-	-	-	-	-	-	22	0	0	62	9	14.51612903	0	0	NA	0	0	NA	1.57042276	1	0	0.42957724	1	1	0.57042276	unphased	0.874166467	0.874166467	1	0.0025	0.9975	0	0	2	3.12E-11	1	1	1	NA	NA	NA	NA
1351289	1206507788	PD9774b	1	200788464	C	G	CAMSAP1L1	CCDS1404.1	r.?	-	-	intronic	31	0	0	42	7	16.66666667	0	0	NA	0	0	NA	1.57042276	1	0	0.42957724	1	1	0.57042276	unphased	1.003672611	1.003672611	1	0.00125	0.99875	0	0	2	1.81E-09	1	1	1	NA	NA	NA	NA
1351289	1206507854	PD9774b	1	201327010	T	G	TNNT2	CCDS4095.1	r.?	-	-	downstream	33	0	0	25	3	12	0	0	NA	0	0	NA	1.57042276	1	0	0.42957724	1	1	0.57042276	unphased	0.72264428	1.266857374	0.57042276	0.00125	0.99625	0.0025	0	2	0.00026475	1	1	1	NA	NA	NA	NA
1351289	1206507866	PD9774b	1	201423625	A	G	-	-	-	-	-	-	31	0	0	50	7	14	0	0	NA	0	0	NA	1.57042276	1	0	0.42957724	1	1	0.57042276	unphased	0.843084993	0.843084993	1	0.00375	0.995	0.00125	0	2	6.46E-09	1	1	1	NA	NA	NA	NA
1351289	1206507879	PD9774b	1	201543196	A	G	-	-	-	-	-	-	27	0	0	48	4	8.333333333	0	0	NA	0	0	NA	1.57042276	1	0	0.42957724	1	1	0.57042276	unphased	0.501836305	0.879762065	0.57042276	0.00125	0.99875	0	0	2	0.000102016	1	1	1	NA	NA	NA	NA
1351289	1206507884	PD9774b	1	201735222	C	G	NAV1	CCDS1414.1	r.?	-	-	intronic	36	0	0	49	6	12.24489796	0	0	NA	0	0	NA	1.57042276	1	0	0.42957724	1	1	0.57042276	unphased	0.737392122	0.737392122	1	0.00625	0.99375	0	0	2	1.82E-07	1	1	1	NA	NA	NA	NA
1351289	1206508428	PD9774b	1	207839049	T	G	ENSG00000249058	ENST00000508064	r.?	-	-	intronic	33	0	0	51	4	7.843137255	0	0	NA	0	0	NA	1.57042276	1	0	0.42957724	1	1	0.57042276	unphased	0.472316523	0.828011355	0.57042276	0.0025	0.995	0.0025	0	2	0.000129466	1	1	1	NA	NA	NA	NA
1351289	1206508578	PD9774b	1	209911585	T	G	HSD11B1	CCDS1489.1	r.?	-	-	downstream	38	0	0	43	9	20.93023256	0	0	NA	0	0	NA	1.57042276	1	0	0.42957724	1	1	0.57042276	unphased	1.260426069	1.260426069	1	0	0.99875	0.00125	0	2	9.45E-13	1	1	1	NA	NA	NA	NA
1351289	1206508648	PD9774b	1	210728815	C	G	HHAT	CCDS1495.1	r.?	-	-	intronic	37	0	0	47	5	10.63829787	0	0	NA	0	0	NA	1.57042276	1	0	0.42957724	1	1	0.57042276	unphased	0.640642092	1.123100509	0.57042276	0.00125	0.9975	0.00125	0	2	4.02E-06	1	1	1	NA	NA	NA	NA
1351289	1206508679	PD9774b	1	211110469	A	G	KCNH1	CCDS31015.1	r.?	-	-	intronic	40	0	0	49	5	10.20408163	0	0	NA	0	0	NA	1.57042276	1	0	0.42957724	1	1	0.57042276	unphased	0.614493435	1.077259671	0.57042276	0	0.9975	0.0025	0	2	4.96E-06	1	1	1	NA	NA	NA	NA
1351289	1206508842	PD9774b	1	212572273	C	G	TMEM206	CCDS1504.1	r.?	-	-	intronic	36	0	0	34	4	11.76470588	0	0	NA	0	0	NA	1.57042276	1	0	0.42957724	1	1	0.57042276	unphased	0.708474784	1.242017033	0.57042276	0	1	0	0	2	2.57E-05	1	1	1	NA	NA	NA	NA
1351289	1206508904	PD9774b	1	213197245	A	G	-	-	-	-	-	-	32	0	0	56	6	10.71428571	0	0	NA	0	0	NA	1.57042276	1	0	0.42957724	1	1	0.57042276	unphased	0.645218107	1.131122655	0.57042276	0	0.99875	0.00125	0	2	4.09E-07	1	1	1	NA	NA	NA	NA
1351289	1206508994	PD9774b	1	214395683	A	G	-	-	-	-	-	-	42	0	0	63	5	7.936507937	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.432667691	0.432667691	1	0.015	0.985	0	0	2	1.73E-05	1	1	1	NA	NA	NA	NA
1351289	1206509001	PD9774b	1	214470115	A	G	SMYD2	CCDS31022.1	r.?	-	-	intronic	36	0	0	59	5	8.474576271	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.462001093	0.462001093	1	0.01875	0.98125	0	0	2	1.25E-05	1	1	1	NA	NA	NA	NA
1351289	1206509067	PD9774b	1	215314912	C	G	KCNK2	CCDS41467.1	r.?	-	-	intronic	29	0	0	68	7	10.29411765	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.561195446	0.561195446	1	0.01125	0.98875	0	0	2	5.80E-08	1	1	1	NA	NA	NA	NA
1351289	1206509096	PD9774b	1	215640179	A	G	-	-	-	-	-	-	35	0	0	62	17	27.41935484	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.494797086	1.494797086	1	0	0.985	0.015	0	2	4.56E-25	1	1	1	NA	NA	NA	NA
1351289	1206509334	PD9774b	1	219132919	C	G	-	-	-	-	-	-	42	0	0	59	14	23.72881356	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.293603062	1.293603062	1	0.00125	0.995	0.00375	0	2	6.58E-20	1	1	1	NA	NA	NA	NA
1351289	1206509589	PD9774b	1	222126581	A	G	-	-	-	-	-	-	40	0	0	63	5	7.936507937	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.432667691	0.432667691	1	0.01375	0.98625	0	0	2	1.73E-05	1	1	1	NA	NA	NA	NA
1351289	1206509938	PD9774b	1	225402599	C	G	DNAH14	CCDS44321.1	r.?	-	-	intronic	34	0	0	71	17	23.94366197	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.305315766	1.305315766	1	0	0.99875	0.00125	0	2	6.12E-24	1	1	1	NA	NA	NA	NA
1351289	1206509995	PD9774b	1	225983431	A	G	-	-	-	-	-	-	30	0	0	66	5	7.575757576	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.413000978	0.413000978	1	0.03125	0.96875	0	0	2	2.17E-05	1	1	1	NA	NA	NA	NA
1351289	1206510318	PD9774b	1	229050918	T	G	-	-	-	-	-	-	34	0	0	59	6	10.16949153	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.554401312	0.554401312	1	0.00125	0.99875	0	0	2	5.61E-07	1	1	1	NA	NA	NA	NA
1351289	1206510465	PD9774b	1	230736415	C	G	-	-	-	-	-	-	38	0	0	70	4	5.714285714	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.311520737	0.311520737	1	0.06625	0.93375	0	0	2	0.000440508	1	1	1	NA	NA	NA	NA
1351289	1206510569	PD9774b	1	232010043	A	G	DISC1	ENST00000439617	r.?	-	-	intronic	34	0	0	57	18	31.57894737	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.721561969	1.721561969	1	0	0.92875	0.07125	0	2	9.84E-28	1	1	1	NA	NA	NA	NA
1351289	1206510835	PD9774b	1	234763160	C	G	-	-	-	-	-	-	47	0	0	51	6	11.76470588	0	0	NA	0	0	NA	2.736337341	1	1	0.263662659	2	1	0.736337341	unphased	0.845641205	1.148442647	0.736337341	0.00375	0.99625	0	0	2	2.32E-07	1	1	1	NA	NA	NA	NA
1351289	1206510972	PD9774b	1	235916351	C	G	LYST	CCDS31062.1	r.7628g>c	c.7453G>C	p.E2485Q	missense	41	0	0	56	5	8.928571429	153	0	0	119	9	7.56302521	2.736337341	1	1	0.263662659	2	1	0.736337341	unphased	0.641781272	0.871585937	0.736337341	0.00125	0.99875	0	0	2	9.65E-06	1	1.15E-08	1	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206510980	PD9774b	1	235978360	C	G	LYST	CCDS31062.1	r.?	-	-	intronic	29	0	0	71	9	12.67605634	0	0	NA	0	0	NA	2.736337341	1	1	0.263662659	2	1	0.736337341	unphased	0.911148623	0.911148623	1	0	1	0	0	2	1.10E-10	1	1	1	NA	NA	NA	NA
1351289	1206510981	PD9774b	1	235990720	A	G	LYST	CCDS31062.1	r.?	-	-	intronic	41	0	0	70	11	15.71428571	0	0	NA	0	0	NA	2.736337341	1	1	0.263662659	2	1	0.736337341	unphased	1.129535038	1.129535038	1	0	1	0	0	2	8.06E-14	1	1	1	NA	NA	NA	NA
1351289	1206511018	PD9774b	1	236296921	C	G	-	-	-	-	-	-	35	0	0	53	6	11.32075472	0	0	NA	0	0	NA	2.736337341	1	1	0.263662659	2	1	0.736337341	unphased	0.813730216	1.105105188	0.736337341	0.0025	0.9975	0	0	2	2.93E-07	1	1	1	NA	NA	NA	NA
1351289	1206511026	PD9774b	1	236376982	A	G	ERO1LB	CCDS31064.1	r.?	-	-	downstream	28	0	0	62	7	11.29032258	0	0	NA	0	0	NA	2.736337341	1	1	0.263662659	2	1	0.736337341	unphased	0.81154277	1.102134475	0.736337341	0.00125	0.995	0.00375	0	2	3.02E-08	1	1	1	NA	NA	NA	NA
1351289	1206511041	PD9774b	1	236461081	A	G	-	-	-	-	-	-	39	0	0	75	10	13.33333333	0	0	NA	0	0	NA	2.736337341	1	1	0.263662659	2	1	0.736337341	unphased	0.958393366	0.958393366	1	0	1	0	0	2	6.02E-12	1	1	1	NA	NA	NA	NA
1351289	1206511252	PD9774b	1	238323652	A	G	-	-	-	-	-	-	40	0	0	69	13	18.84057971	0	0	NA	0	0	NA	2.736337341	1	1	0.263662659	2	1	0.736337341	unphased	1.354251495	1.354251495	1	0	0.9975	0.0025	0	2	3.64E-17	1	1	1	NA	NA	NA	NA
1351289	1206511374	PD9774b	1	239354002	A	G	-	-	-	-	-	-	41	0	0	55	10	18.18181818	0	0	NA	0	0	NA	2.736337341	1	1	0.263662659	2	1	0.736337341	unphased	1.306900044	1.306900044	1	0	0.9975	0.0025	0	2	2.33E-13	1	1	1	NA	NA	NA	NA
1351289	1206511539	PD9774b	1	240609816	A	G	FMN2	CCDS31069.2	r.?	-	-	intronic	35	0	0	77	13	16.88311688	0	0	NA	0	0	NA	2.736337341	1	1	0.263662659	2	1	0.736337341	unphased	1.213550041	1.213550041	1	0	0.9975	0.0025	0	2	1.67E-16	1	1	1	NA	NA	NA	NA
1351289	1206511580	PD9774b	1	240965254	A	G	RGS7	CCDS31071.1	r.?	-	-	intronic	33	0	0	69	8	11.5942029	0	0	NA	0	0	NA	2.736337341	1	1	0.263662659	2	1	0.736337341	unphased	0.833385536	1.13179855	0.736337341	0.00125	0.995	0.00375	0	2	2.49E-09	1	1	1	NA	NA	NA	NA
1351289	1206511599	PD9774b	1	241149740	C	G	RGS7	CCDS31071.1	r.?	-	-	intronic	25	0	0	52	6	11.53846154	0	0	NA	0	0	NA	2.736337341	1	1	0.263662659	2	1	0.736337341	unphased	0.829378874	1.126357211	0.736337341	0.0025	0.99625	0.00125	0	2	2.61E-07	1	1	1	NA	NA	NA	NA
1351289	1206511617	PD9774b	1	241274180	T	G	RGS7	CCDS31071.1	r.?	-	-	intronic	37	0	0	57	4	7.01754386	0	0	NA	0	0	NA	2.736337341	1	1	0.263662659	2	1	0.736337341	unphased	0.504417561	0.685035965	0.736337341	0.00375	0.99625	0	0	2	0.000199821	1	1	1	NA	NA	NA	NA
1351289	1206511748	PD9774b	1	242203451	C	G	-	-	-	-	-	-	38	0	0	57	9	15.78947368	0	0	NA	0	0	NA	2.736337341	1	1	0.263662659	2	1	0.736337341	unphased	1.134939512	1.134939512	1	0	0.99875	0.00125	0	2	1.42E-11	1	1	1	NA	NA	NA	NA
1351289	1206511950	PD9774b	1	243489080	T	G	SDCCAG8	CCDS31075.1	r.?	-	-	intronic	27	0	0	77	10	12.98701299	0	0	NA	0	0	NA	2.736337341	1	1	0.263662659	2	1	0.736337341	unphased	0.933500032	0.933500032	1	0	1	0	0	2	7.90E-12	1	1	1	NA	NA	NA	NA
1351289	1206511995	PD9774b	1	244004219	A	G	AKT3	CCDS31077.1	r.?	-	-	intronic	47	0	0	66	16	24.24242424	0	0	NA	0	0	NA	2.736337341	1	1	0.263662659	2	1	0.736337341	unphased	1.742533393	1.00356846	1.736337341	0.0025	0.9975	0	0	2	1.03E-22	1	1	1	NA	NA	NA	NA
1351289	1206512019	PD9774b	1	244163400	T	G	-	-	-	-	-	-	30	0	0	53	14	26.41509434	73	0	0	74	9	12.16216216	2.736337341	1	1	0.263662659	2	1	0.736337341	unphased	1.898703838	1.093510917	1.736337341	0.00125	0.99875	0	0	2	1.22E-20	1	1.61E-10	1	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206512392	PD9774b	1	246862557	C	G	-	-	-	-	-	-	22	0	0	62	13	20.96774194	115	0	0	59	7	11.86440678	3	2	1	1	NA	NA	NA	unphased	1.562434964	1.562434964	1	0	0.985	0.015	0	2	8.08E-18	1	2.12E-08	1	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206512535	PD9774b	1	247912890	C	G	-	-	-	-	-	-	35	0	0	48	7	14.58333333	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	1.086693548	1.086693548	1	0	0.99875	0.00125	0	2	4.81E-09	1	1	1	NA	NA	NA	NA
1351289	1206512577	PD9774b	1	248311903	T	G	OR2M5	CCDS31105.1	r.?	-	-	downstream	42	0	0	75	6	8	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	0.596129032	0.596129032	1	0.00125	0.99875	0	0	2	2.34E-06	1	1	1	NA	NA	NA	NA
1351289	1206512670	PD9774b	1	248628406	A	G	-	-	-	-	-	-	48	0	0	102	22	21.56862745	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	1.607210626	0.803605313	2	0.00125	0.99875	0	0	2	1.94E-29	1	1	1	NA	NA	NA	NA
1351289	1206512706	PD9774b	1	249080805	T	G	-	-	-	-	-	-	29	0	0	60	4	6.666666667	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	0.496774194	0.496774194	1	0.005	0.995	0	0	2	0.000243755	1	1	1	NA	NA	NA	NA
1351289	1206512709	PD9774b	1	249094424	A	G	-	-	-	-	-	-	44	0	0	79	10	12.65822785	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	0.94324214	0.94324214	1	0	1	0	0	2	1.03E-11	1	1	1	NA	NA	NA	NA
1351289	1206512854	PD9774b	10	644319	A	G	DIP2C	CCDS7054.1	r.?	-	-	intronic	39	0	0	50	12	24	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	1.788387097	0.894193548	2	0	0.99875	0.00125	0	2	2.49E-17	1	1	1	NA	NA	NA	NA
1351289	1206513142	PD9774b	10	2073182	T	G	-	-	-	-	-	-	28	0	0	67	12	17.91044776	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	1.334617236	1.334617236	1	0	0.99625	0.00375	0	2	1.14E-15	1	1	1	NA	NA	NA	NA
1351289	1206513372	PD9774b	10	3822968	C	G	KLF6	CCDS7060.1	r.?	-	-	intronic	31	0	0	79	6	7.594936709	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	0.565945284	0.565945284	1	0.0075	0.9925	0	0	2	3.18E-06	1	1	1	NA	NA	NA	NA
1351289	1206513587	PD9774b	10	5590069	C	G	-	-	-	-	-	-	33	0	0	66	7	10.60606061	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.64656633	1.003075488	0.64458392	0.0025	0.9975	0	0	2	4.70E-08	1	1	1	NA	NA	NA	NA
1351289	1206513901	PD9774b	10	7710490	A	G	ITIH5	CCDS31139.1	r.?	-	-	upstream	34	0	0	54	14	25.92592593	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	1.580495473	1.580495473	1	0	0.98625	0.01375	0	2	1.64E-20	1	1	1	NA	NA	NA	NA
1351289	1206514444	PD9774b	10	12371694	T	G	-	-	-	-	-	-	27	0	0	44	7	15.90909091	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.969849495	0.969849495	1	0.00375	0.99625	0	0	2	2.55E-09	1	1	1	NA	NA	NA	NA
1351289	1206514889	PD9774b	10	16215789	T	G	-	-	-	-	-	-	45	0	0	65	4	6.153846154	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.375150574	0.582004239	0.64458392	0.00375	0.99625	0	0	2	0.000331785	1	1	1	NA	NA	NA	NA
1351289	1206515036	PD9774b	10	18191209	A	G	MRC1	CCDS7123.1	r.?	-	-	intronic	9	0	0	10	3	30	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	1.828859047	1.828859047	1	0	0.99625	0.00375	0	2	1.46E-05	1	1	1	NA	NA	NA	NA
1351289	1206515295	PD9774b	10	20773733	C	G	-	-	-	-	-	-	25	0	0	61	5	8.196721311	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.499688264	0.775210564	0.64458392	0	1	0	0	2	1.47E-05	1	1	1	NA	NA	NA	NA
1351289	1206515352	PD9774b	10	21567426	A	G	-	-	-	-	-	-	30	0	0	59	10	16.94915254	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	1.033253699	1.033253699	1	0.00125	0.99875	0	0	2	4.91E-13	1	1	1	NA	NA	NA	NA
1351289	1206515473	PD9774b	10	22736261	A	G	-	-	-	-	-	-	30	0	0	58	9	15.51724138	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.945961576	0.945961576	1	0	1	0	0	2	1.67E-11	1	1	1	NA	NA	NA	NA
1351289	1206515611	PD9774b	10	24371469	C	G	KIAA1217	CCDS41496.1	r.?	-	-	intronic	27	0	0	55	5	9.090909091	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.554199711	0.85977899	0.64458392	0.00375	0.995	0.00125	0	2	8.83E-06	1	1	1	NA	NA	NA	NA
1351289	1206515919	PD9774b	10	27179111	C	G	-	-	-	-	-	-	31	0	0	48	8	16.66666667	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	1.016032804	1.016032804	1	0.0025	0.9975	0	0	2	1.23E-10	1	1	1	NA	NA	NA	NA
1351289	1206515936	PD9774b	10	27242815	C	G	-	-	-	-	-	-	40	0	0	62	5	8.064516129	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.491628776	0.762707168	0.64458392	0.00125	0.99875	0	0	2	1.60E-05	1	1	1	NA	NA	NA	NA
1351289	1206516106	PD9774b	10	28845420	C	G	WAC	CCDS7159.1	r.?	-	-	intronic	31	0	0	61	4	6.557377049	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.399750611	0.620168451	0.64458392	0.005	0.995	0	0	2	0.000259828	1	1	1	NA	NA	NA	NA
1351289	1206516716	PD9774b	10	35081517	C	G	PARD3	CCDS7178.1	r.?	-	-	intronic	41	0	0	65	10	15.38461538	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.937876434	0.937876434	1	0.0025	0.9975	0	0	2	1.36E-12	1	1	1	NA	NA	NA	NA
1351289	1206516778	PD9774b	10	35547198	C	G	CCNY	CCDS7190.1	r.?	-	-	intronic	33	0	0	49	8	16.32653061	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.99529744	0.99529744	1	0	1	0	0	2	1.47E-10	1	1	1	NA	NA	NA	NA
1351289	1206516834	PD9774b	10	36252481	T	G	-	-	-	-	-	-	51	0	0	59	8	13.55932203	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.826602959	0.826602959	1	0	1	0	0	2	6.90E-10	1	1	1	NA	NA	NA	NA
1351289	1206516933	PD9774b	10	37211527	T	G	-	-	-	-	-	-	32	0	0	56	4	7.142857143	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.43544263	0.675540635	0.64458392	0.00125	0.99875	0	0	2	0.000186538	1	1	1	NA	NA	NA	NA
1351289	1206516934	PD9774b	10	37221142	A	G	-	-	-	-	-	-	27	0	0	59	5	8.474576271	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.516626849	0.801488889	0.64458392	0.00125	0.9975	0.00125	0	2	1.25E-05	1	1	1	NA	NA	NA	NA
1351289	1206516993	PD9774b	10	37786613	A	G	-	-	-	-	-	-	31	0	0	57	13	22.80701754	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	1.390360679	1.390360679	1	0	0.98875	0.01125	0	2	2.44E-18	1	1	1	NA	NA	NA	NA
1351289	1206517293	PD9774b	10	38911161	C	G	-	-	-	-	-	-	46	0	0	112	5	4.464285714	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.272151644	0.422212897	0.64458392	0.02375	0.97625	0	0	2	0.000268964	1	1	1	NA	NA	NA	NA
1351289	1206521225	PD9774b	10	42874309	T	G	-	-	-	-	-	-	34	0	0	52	5	9.615384615	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.586172771	0.909381624	0.64458392	0.00125	0.9975	0.00125	0	2	6.68E-06	1	1	1	NA	NA	NA	NA
1351289	1206521319	PD9774b	10	44285956	C	G	-	-	-	-	-	-	31	0	0	44	9	20.45454545	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	1.24694935	1.24694935	1	0.0025	0.99625	0.00125	0	2	1.18E-12	1	1	1	NA	NA	NA	NA
1351289	1206521333	PD9774b	10	44572312	C	G	-	-	-	-	-	-	27	0	0	50	5	10	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.609619682	0.945756888	0.64458392	0.00125	0.9975	0.00125	0	2	5.49E-06	1	1	1	NA	NA	NA	NA
1351289	1206521376	PD9774b	10	45153463	A	G	-	-	-	-	-	-	33	0	0	47	11	23.40425532	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	1.426769469	1.426769469	1	0	0.99625	0.00375	0	2	7.21E-16	1	1	1	NA	NA	NA	NA
1351289	1206521600	PD9774b	10	48580566	C	G	-	-	-	-	-	-	36	0	0	53	7	13.20754717	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.805158071	0.805158071	1	0.00125	0.99875	0	0	2	9.85E-09	1	1	1	NA	NA	NA	NA
1351289	1206521854	PD9774b	10	52890734	A	G	PRKG1	CCDS7244.1	r.?	-	-	intronic	44	0	0	58	7	12.06896552	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.735747892	1.141430727	0.64458392	0	1	0	0	2	1.88E-08	1	1	1	NA	NA	NA	NA
1351289	1206522014	PD9774b	10	54948065	C	G	-	-	-	-	-	-	35	0	0	56	7	12.5	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.762024603	1.182196111	0.64458392	0.00375	0.99625	0	0	2	1.46E-08	1	1	1	NA	NA	NA	NA
1351289	1206522054	PD9774b	10	55391706	A	G	-	-	-	-	-	-	35	0	0	60	6	10	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.609619682	0.945756888	0.64458392	0.00125	0.99875	0	0	2	6.21E-07	1	1	1	NA	NA	NA	NA
1351289	1206522231	PD9774b	10	57284959	A	G	PCDH15	ENST00000373957	r.?	-	-	intronic	37	0	0	69	6	8.695652174	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.530104072	0.822397294	0.64458392	0	1	0	0	2	1.43E-06	1	1	1	NA	NA	NA	NA
1351289	1206522772	PD9774b	10	63770400	C	G	ARID5B	CCDS31208.1	r.?	-	-	intronic	47	0	0	41	5	12.19512195	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.743438637	1.153362059	0.64458392	0	0.99875	0.00125	0	2	2.02E-06	1	1	1	NA	NA	NA	NA
1351289	1206523085	PD9774b	10	67170294	A	G	-	-	-	-	-	-	39	0	0	55	7	12.72727273	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.775879596	1.203690585	0.64458392	0	0.99875	0.00125	0	2	1.28E-08	1	1	1	NA	NA	NA	NA
1351289	1206523269	PD9774b	10	69406862	C	G	CTNNA3	CCDS7269.1	r.?	-	-	intronic	18	0	0	22	4	18.18181818	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	1.108399422	1.108399422	1	0	0.99875	0.00125	0	2	4.25E-06	1	1	1	NA	NA	NA	NA
1351289	1206523341	PD9774b	10	69996783	C	G	ATOH7	CCDS7276.1	r.?	-	-	upstream	25	0	0	46	7	15.2173913	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.927682125	0.927682125	1	0.00125	0.9975	0.00125	0	2	3.53E-09	1	1	1	NA	NA	NA	NA
1351289	1206523423	PD9774b	10	70947037	C	G	SUPV3L1	CCDS7287.1	r.?	-	-	intronic	27	0	0	47	5	10.63829787	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.648531577	1.006124349	0.64458392	0.00125	0.99625	0.0025	0	2	4.02E-06	1	1	1	NA	NA	NA	NA
1351289	1206523716	PD9774b	10	74192218	T	G	CBARA1	ENST00000398761	r.?	-	-	intronic	42	0	0	51	6	11.76470588	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.759013283	0.759013283	1	0.00125	0.99875	0	0	2	2.32E-07	1	1	1	NA	NA	NA	NA
1351289	1206523792	PD9774b	10	75078946	C	G	TTC18	CCDS7324.2	r.?	-	-	intronic	33	0	0	57	5	8.771929825	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.565930956	0.565930956	1	0.01	0.99	0	0	2	1.05E-05	1	1	1	NA	NA	NA	NA
1351289	1206524167	PD9774b	10	80891405	C	G	ZMIZ1	CCDS7357.1	r.?	-	-	intronic	24	0	0	39	4	10.25641026	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.661703888	0.661703888	1	0.00125	0.99875	0	0	2	4.47E-05	1	1	1	NA	NA	NA	NA
1351289	1206524339	PD9774b	10	83029310	A	G	-	-	-	-	-	-	35	0	0	43	4	9.302325581	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.600150038	0.600150038	1	0.0075	0.9925	0	0	2	6.60E-05	1	1	1	NA	NA	NA	NA
1351289	1206524387	PD9774b	10	83507467	T	G	-	-	-	-	-	-	26	0	0	54	8	14.81481481	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.955794504	0.955794504	1	0	1	0	0	2	3.31E-10	1	1	1	NA	NA	NA	NA
1351289	1206524395	PD9774b	10	83734472	C	G	NRG3	CCDS31233.1	r.?	-	-	intronic	37	0	0	59	4	6.779661017	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.437397485	0.437397485	1	0.02125	0.97875	0	0	2	0.00022841	1	1	1	NA	NA	NA	NA
1351289	1206524452	PD9774b	10	84541058	A	G	NRG3	CCDS31233.1	r.?	-	-	intronic	54	0	0	44	9	20.45454545	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.319648094	1.319648094	1	0	0.9975	0.0025	0	2	1.18E-12	1	1	1	NA	NA	NA	NA
1351289	1206524453	PD9774b	10	84663648	A	G	NRG3	CCDS31233.1	r.?	-	-	intronic	29	0	0	61	14	22.95081967	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.480698043	1.480698043	1	0	0.9975	0.0025	0	2	1.10E-19	1	1	1	NA	NA	NA	NA
1351289	1206524867	PD9774b	10	91497798	T	G	KIF20B	CCDS7407.1	r.3152u>g	c.3080T>G	p.I1027S	missense	35	0	0	46	11	23.91304348	189	0	0	185	16	8.648648649	0.728995003	0	0	0.271004997	1	0	0.728995003	unphased	1.238841021	1.238841021	1	0	0.99625	0.00375	0	2	5.55E-16	1	3.18E-15	1	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206524984	PD9774b	10	93410065	C	G	-	-	-	-	-	-	37	0	0	28	3	10.71428571	0	0	NA	0	0	NA	0.728995003	0	0	0.271004997	1	0	0.728995003	unphased	0.555065133	0.761411437	0.728995003	0.00125	0.99875	0	0	2	0.000372895	1	1	1	NA	NA	NA	NA
1351289	1206525096	PD9774b	10	94644958	C	G	EXOC6	CCDS31247.1	r.?	-	-	intronic	26	0	0	57	5	8.771929825	0	0	NA	0	0	NA	0.728995003	0	0	0.271004997	1	0	0.728995003	unphased	0.45443929	0.623377784	0.728995003	0.00375	0.99625	0	0	2	1.05E-05	1	1	1	NA	NA	NA	NA
1351289	1206525465	PD9774b	10	98726086	T	G	LCOR	CCDS7451.1	r.?	-	-	downstream	25	0	0	52	5	9.615384615	0	0	NA	0	0	NA	0.728995003	0	0	0.271004997	1	0	0.728995003	unphased	0.498135376	0.683317956	0.728995003	0.00375	0.99625	0	0	2	6.68E-06	1	1	1	NA	NA	NA	NA
1351289	1206525820	PD9774b	10	103550775	C	G	MGEA5	CCDS7520.1	r.2728g>c	c.2332G>C	p.G778R	missense	22	0	0	37	5	13.51351351	197	0	0	102	5	4.901960784	0.728995003	0	0	0.271004997	1	0	0.728995003	unphased	0.70008215	0.960338749	0.728995003	0.00125	0.99625	0.0025	0	2	1.19E-06	1	0.000174019	1	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206526044	PD9774b	10	106364239	C	G	-	-	-	-	-	-	28	0	0	47	7	14.89361702	0	0	NA	0	0	NA	0.728995003	0	0	0.271004997	1	0	0.728995003	unphased	0.771579901	1.058415898	0.728995003	0	1	0	0	2	4.12E-09	1	1	1	NA	NA	NA	NA
1351289	1206526225	PD9774b	10	108820933	C	G	SORCS1	CCDS7559.1	r.?	-	-	intronic	48	0	0	55	8	14.54545455	0	0	NA	0	0	NA	0.728995003	0	0	0.271004997	1	0	0.728995003	unphased	0.753542968	1.033673708	0.728995003	0.00125	0.9975	0.00125	0	2	3.86E-10	1	1	1	NA	NA	NA	NA
1351289	1206526356	PD9774b	10	110939424	C	G	-	-	-	-	-	-	30	0	0	52	5	9.615384615	0	0	NA	0	0	NA	0.728995003	0	0	0.271004997	1	0	0.728995003	unphased	0.498135376	0.683317956	0.728995003	0.00125	0.9975	0.00125	0	2	6.68E-06	1	1	1	NA	NA	NA	NA
1351289	1206526365	PD9774b	10	111151364	C	G	-	-	-	-	-	-	34	0	0	54	10	18.51851852	0	0	NA	0	0	NA	0.728995003	0	0	0.271004997	1	0	0.728995003	unphased	0.959371835	0.959371835	1	0.00125	0.99875	0	0	2	1.91E-13	1	1	1	NA	NA	NA	NA
1351289	1206526431	PD9774b	10	112256145	C	G	DUSP5	CCDS7566.1	r.?	-	-	upstream	30	0	0	39	5	12.82051282	0	0	NA	0	0	NA	0.728995003	0	0	0.271004997	1	0	0.728995003	unphased	0.664180501	0.911090608	0.728995003	0.0025	0.9975	0	0	2	1.56E-06	1	1	1	NA	NA	NA	NA
1351289	1206526504	PD9774b	10	113202810	T	G	-	-	-	-	-	-	36	0	0	47	5	10.63829787	0	0	NA	0	0	NA	0.728995003	0	0	0.271004997	1	0	0.728995003	unphased	0.551128501	0.756011356	0.728995003	0.00125	0.99875	0	0	2	4.02E-06	1	1	1	NA	NA	NA	NA
1351289	1206526765	PD9774b	10	116965763	C	G	ATRNL1	CCDS7592.1	r.?	-	-	intronic	44	0	0	52	7	13.46153846	0	0	NA	0	0	NA	0.728995003	0	0	0.271004997	1	0	0.728995003	unphased	0.697389526	0.956645138	0.728995003	0.00125	0.99625	0.0025	0	2	8.58E-09	1	1	1	NA	NA	NA	NA
1351289	1206526796	PD9774b	10	117325499	A	G	ATRNL1	CCDS7592.1	r.?	-	-	intronic	36	0	0	59	7	11.86440678	0	0	NA	0	0	NA	0.728995003	0	0	0.271004997	1	0	0.728995003	unphased	0.614648396	0.843144868	0.728995003	0	1	0	0	2	2.12E-08	1	1	1	NA	NA	NA	NA
1351289	1206527244	PD9774b	10	123461656	T	G	-	-	-	-	-	-	34	0	0	42	10	23.80952381	0	0	NA	0	0	NA	0.728995003	0	0	0.271004997	1	0	0.728995003	unphased	1.233478073	1.233478073	1	0	0.99875	0.00125	0	2	1.24E-14	1	1	1	NA	NA	NA	NA
1351289	1206527295	PD9774b	10	124054294	T	G	BTBD16	CCDS31301.1	r.?	-	-	intronic	40	0	0	50	11	22	0	0	NA	0	0	NA	0.728995003	0	0	0.271004997	1	0	0.728995003	unphased	1.139733739	1.139733739	1	0	0.99875	0.00125	0	2	1.52E-15	1	1	1	NA	NA	NA	NA
1351289	1206527313	PD9774b	10	124291887	C	G	-	-	-	-	-	-	36	0	0	50	10	20	0	0	NA	0	0	NA	0.728995003	0	0	0.271004997	1	0	0.728995003	unphased	1.036121581	1.036121581	1	0	1	0	0	2	8.36E-14	1	1	1	NA	NA	NA	NA
1351289	1206528134	PD9774b	10	129333970	C	G	-	-	-	-	-	-	32	0	0	45	8	17.77777778	0	0	NA	0	0	NA	0.728995003	0	0	0.271004997	1	0	0.728995003	unphased	0.920996961	0.920996961	1	0	1	0	0	2	7.14E-11	1	1	1	NA	NA	NA	NA
1351289	1206528172	PD9774b	10	129935388	A	G	-	-	-	-	-	-	34	0	0	37	11	29.72972973	0	0	NA	0	0	NA	0.728995003	0	0	0.271004997	1	0	0.728995003	unphased	1.540180729	1.540180729	1	0.00125	0.99	0.00875	0	2	3.70E-17	1	1	1	NA	NA	NA	NA
1351289	1206528189	PD9774b	10	130086024	C	G	-	-	-	-	-	-	36	0	0	46	10	21.73913043	0	0	NA	0	0	NA	0.728995003	0	0	0.271004997	1	0	0.728995003	unphased	1.12621911	1.12621911	1	0.00125	0.99875	0	0	2	3.38E-14	1	1	1	NA	NA	NA	NA
1351289	1206528236	PD9774b	10	130554737	C	G	-	-	-	-	-	-	29	0	0	55	4	7.272727273	0	0	NA	0	0	NA	0.728995003	0	0	0.271004997	1	0	0.728995003	unphased	0.376771484	0.516836854	0.728995003	0.005	0.995	0	0	2	0.000173903	1	1	1	NA	NA	NA	NA
1351289	1206528403	PD9774b	10	133108952	C	G	TCERG1L	CCDS7662.2	r.?	-	-	intronic	30	0	0	33	5	15.15151515	0	0	NA	0	0	NA	0.728995003	0	0	0.271004997	1	0	0.728995003	unphased	0.784940592	1.076743446	0.728995003	0.00125	0.99875	0	0	2	6.60E-07	1	1	1	NA	NA	NA	NA
1351289	1206529849	PD9774b	11	6385482	C	G	-	-	-	-	-	-	30	0	0	59	5	8.474576271	0	0	NA	0	0	NA	0.502376961	0	0	0.497623039	1	0	0.502376961	unphased	0.41982965	0.83568651	0.502376961	0	1	0	0	2	1.25E-05	1	1	1	NA	NA	NA	NA
1351289	1206529894	PD9774b	11	7064236	C	G	NLRP14	CCDS7776.1	r.1302c>g	c.979C>G	p.L327V	missense	35	0	0	40	4	10	0	0	NA	0	0	NA	1.258735013	1	0	0.741264987	2	0	0.258735013	unphased	0.571034792	0.571034792	1	0.00125	0.9975	0.00125	0	2	4.95E-05	1	1	1	NA	NA	NA	NA
1351289	1206529917	PD9774b	11	7327336	A	G	SYT9	CCDS7778.1	r.?	-	-	intronic	42	0	0	49	5	10.20408163	0	0	NA	0	0	NA	1.258735013	1	0	0.741264987	2	0	0.258735013	unphased	0.582688563	0.582688563	1	0.0025	0.9975	0	0	2	4.96E-06	1	1	1	NA	NA	NA	NA
1351289	1206530131	PD9774b	11	9737922	C	G	SWAP70	CCDS31426.1	r.?	-	-	intronic	35	0	0	65	4	6.153846154	0	0	NA	0	0	NA	1.258735013	1	0	0.741264987	2	0	0.258735013	unphased	0.351406026	1.358169586	0.258735013	0	0.9975	0.0025	0	2	0.000331785	1	1	1	NA	NA	NA	NA
1351289	1206530169	PD9774b	11	10164153	C	G	SBF2	CCDS31427.1	r.?	-	-	intronic	38	0	0	46	6	13.04347826	0	0	NA	0	0	NA	1.258735013	1	0	0.741264987	2	0	0.258735013	unphased	0.744827989	0.744827989	1	0.0025	0.9975	0	0	2	1.23E-07	1	1	1	NA	NA	NA	NA
1351289	1206530645	PD9774b	11	16659458	T	G	-	-	-	-	-	-	34	0	0	28	4	14.28571429	0	0	NA	0	0	NA	1.228568745	1	0	0.771431255	2	0	0.228568745	unphased	0.811454521	0.811454521	1	0.0025	0.99625	0.00125	0	2	1.16E-05	1	1	1	NA	NA	NA	NA
1351289	1206530670	PD9774b	11	16993155	C	G	PLEKHA7	CCDS31434.1	r.?	-	-	intronic	23	0	0	49	9	18.36734694	0	0	NA	0	0	NA	1.228568745	1	0	0.771431255	2	0	0.228568745	unphased	1.04329867	1.04329867	1	0	1	0	0	2	3.35E-12	1	1	1	NA	NA	NA	NA
1351289	1206530766	PD9774b	11	18446955	C	G	LDHC	CCDS7840.1	r.?	-	-	intronic	25	0	0	52	8	15.38461538	0	0	NA	0	0	NA	1.228568745	1	0	0.771431255	2	0	0.228568745	unphased	0.8738741	0.8738741	1	0	1	0	0	2	2.42E-10	1	1	1	NA	NA	NA	NA
1351289	1206530875	PD9774b	11	19916974	T	G	NAV2	CCDS7851.2	r.?	-	-	intronic	43	0	0	68	8	11.76470588	0	0	NA	0	0	NA	2.605509359	2	0	0.394490641	3	0	0.605509359	unphased	0.830249678	0.830249678	1	0.0025	0.9975	0	0	2	2.21E-09	1	1	1	NA	NA	NA	NA
1351289	1206530962	PD9774b	11	20654494	C	G	SLC6A5	CCDS7854.1	r.?	-	-	intronic	27	0	0	63	4	6.349206349	0	0	NA	0	0	NA	2.605509359	2	0	0.394490641	3	0	0.605509359	unphased	0.448071255	0.739990635	0.605509359	0.00375	0.995	0.00125	0	2	0.000294233	1	1	1	NA	NA	NA	NA
1351289	1206531165	PD9774b	11	23023199	C	G	-	-	-	-	-	-	34	0	0	41	8	19.51219512	0	0	NA	0	0	NA	1.203721092	1	0	0.796278908	2	0	0.203721092	unphased	1.103479804	1.103479804	1	0.00125	0.99875	0	0	2	3.22E-11	1	1	1	NA	NA	NA	NA
1351289	1206531229	PD9774b	11	23645298	A	G	-	-	-	-	-	-	26	0	0	50	6	12	0	0	NA	0	0	NA	1.203721092	1	0	0.796278908	2	0	0.203721092	unphased	0.678640079	0.678640079	1	0.00625	0.99375	0	0	2	2.06E-07	1	1	1	NA	NA	NA	NA
1351289	1206531301	PD9774b	11	24456838	A	G	-	-	-	-	-	-	35	0	0	57	9	15.78947368	0	0	NA	0	0	NA	1.203721092	1	0	0.796278908	2	0	0.203721092	unphased	0.892947473	0.892947473	1	0	1	0	0	2	1.42E-11	1	1	1	NA	NA	NA	NA
1351289	1206531528	PD9774b	11	26600405	C	G	ANO3	CCDS31447.1	r.?	-	-	intronic	36	0	0	46	3	6.52173913	0	0	NA	1	0	0	3	2	1	1	NA	NA	NA	unphased	0.485974755	0.485974755	1	0.0075	0.9925	0	0	2	0.001615827	1	1	1	NA	NA	NA	NA
1351289	1206531578	PD9774b	11	27093739	C	G	BBOX1	CCDS7862.1	r.?	-	-	intronic	37	0	0	53	4	7.547169811	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	0.562385879	0.562385879	1	0.00375	0.99625	0	0	2	0.000150502	1	1	1	NA	NA	NA	NA
1351289	1206531850	PD9774b	11	31227367	A	G	ENSG00000226746	ENST00000399333	r.?	-	-	intronic	32	0	0	50	4	8	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	0.596129032	0.596129032	1	0.00375	0.99625	0	0	2	0.000119787	1	1	1	NA	NA	NA	NA
1351289	1206531866	PD9774b	11	31635785	C	G	ELP4	CCDS7875.2	r.?	-	-	intronic	37	0	0	61	7	11.47540984	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	0.85510312	0.85510312	1	0.00125	0.99875	0	0	2	2.69E-08	1	1	1	NA	NA	NA	NA
1351289	1206531955	PD9774b	11	32586989	C	G	-	-	-	-	-	-	35	0	0	55	7	12.72727273	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	0.948387097	0.948387097	1	0.00125	0.9975	0.00125	0	2	1.28E-08	1	1	1	NA	NA	NA	NA
1351289	1206531969	PD9774b	11	32714451	A	G	CCDC73	CCDS41630.1	r.?	-	-	intronic	45	0	0	61	13	21.31147541	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	1.588048652	1.588048652	1	0	0.98125	0.01875	0	2	6.41E-18	1	1	1	NA	NA	NA	NA
1351289	1206531993	PD9774b	11	32835243	C	G	-	-	-	-	-	-	45	0	0	59	4	6.779661017	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	0.505194095	0.505194095	1	0.0075	0.9925	0	0	2	0.00022841	1	1	1	NA	NA	NA	NA
1351289	1206532057	PD9774b	11	33573686	C	G	C11orf41	CCDS44565.1	r.3005c>g	c.2881C>G	p.Q961E	missense	38	0	0	56	5	8.928571429	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	0.665322581	0.665322581	1	0.0025	0.9975	0	0	2	9.65E-06	1	1	1	NA	NA	NA	NA
1351289	1206532461	PD9774b	11	37402060	C	G	-	-	-	-	-	-	36	0	0	56	6	10.71428571	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	0.798387097	0.798387097	1	0.0025	0.9975	0	0	2	4.09E-07	1	1	1	NA	NA	NA	NA
1351289	1206532462	PD9774b	11	37415038	A	G	-	-	-	-	-	-	49	0	0	45	4	8.888888889	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	0.662365591	0.662365591	1	0.00375	0.99625	0	0	2	7.91E-05	1	1	1	NA	NA	NA	NA
1351289	1206532554	PD9774b	11	38653563	A	G	-	-	-	-	-	-	33	0	0	49	12	24.48979592	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	1.824884793	0.912442396	2	0.0025	0.9975	0	0	2	1.90E-17	1	1	1	NA	NA	NA	NA
1351289	1206532555	PD9774b	11	38677387	C	G	-	-	-	-	-	-	30	0	0	68	6	8.823529412	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	0.657495256	0.657495256	1	0.00375	0.99625	0	0	2	1.31E-06	1	1	1	NA	NA	NA	NA
1351289	1206532884	PD9774b	11	42727040	A	G	-	-	-	-	-	-	27	0	0	60	8	13.33333333	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	0.993548387	0.993548387	1	0.00125	0.9975	0.00125	0	2	7.93E-10	1	1	1	NA	NA	NA	NA
1351289	1206532918	PD9774b	11	43161056	A	G	-	-	-	-	-	-	34	0	0	60	6	10	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	0.74516129	0.74516129	1	0.0025	0.9975	0	0	2	6.21E-07	1	1	1	NA	NA	NA	NA
1351289	1206533008	PD9774b	11	44249214	C	G	EXT2	CCDS7908.1	r.?	-	-	intronic	36	0	0	60	4	6.666666667	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	0.496774194	0.496774194	1	0.00125	0.99875	0	0	2	0.000243755	1	1	1	NA	NA	NA	NA
1351289	1206533117	PD9774b	11	45389401	C	G	-	-	-	-	-	-	28	0	0	43	4	9.302325581	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	0.693173293	0.693173293	1	0.00875	0.99125	0	0	2	6.60E-05	1	1	1	NA	NA	NA	NA
1351289	1206533174	PD9774b	11	46119080	A	G	PHF21A	CCDS44578.1	r.?	-	-	intronic	33	0	0	62	11	17.74193548	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	1.322060354	1.322060354	1	0.00125	0.995	0.00375	0	2	1.96E-14	1	1	1	NA	NA	NA	NA
1351289	1206533186	PD9774b	11	46254146	A	G	-	-	-	-	-	-	25	0	0	72	6	8.333333333	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	0.620967742	0.620967742	1	0.01	0.99	0	0	2	1.84E-06	1	1	1	NA	NA	NA	NA
1351289	1206534166	PD9774b	11	50187832	C	G	-	-	-	-	-	-	39	0	0	48	5	10.41666667	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.463709677	0.463709677	1	0.01875	0.98125	0	0	2	4.47E-06	1	1	1	NA	NA	NA	NA
1351289	1206535149	PD9774b	11	55164717	A	G	-	-	-	-	-	-	40	0	0	54	9	16.66666667	0	0	NA	0	0	NA	1.485754291	1	0	0.514245709	1	1	0.485754291	unphased	0.989561199	0.989561199	1	0	1	0	0	2	8.48E-12	1	1	1	NA	NA	NA	NA
1351289	1206535908	PD9774b	11	63985941	A	G	FERMT3	CCDS8060.1	r.?	-	-	intronic	24	0	0	39	8	20.51282051	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.11827957	1.11827957	1	0	0.9975	0.0025	0	2	2.09E-11	1	1	1	NA	NA	NA	NA
1351289	1206536914	PD9774b	11	73355456	A	G	PLEKHB1	CCDS44672.1	r.?	-	-	upstream	28	0	0	37	11	29.72972973	0	0	NA	0	0	NA	1.26776812	1	0	0.73223188	2	0	0.26776812	unphased	1.700356521	1.341220443	1.26776812	0	0.99625	0.00375	0	2	3.70E-17	1	1	1	NA	NA	NA	NA
1351289	1206537034	PD9774b	11	74830589	C	G	-	-	-	-	-	-	44	0	0	51	9	17.64705882	0	0	NA	0	0	NA	1.26776812	1	0	0.73223188	2	0	0.26776812	unphased	1.009302534	1.009302534	1	0.00125	0.99875	0	0	2	4.92E-12	1	1	1	NA	NA	NA	NA
1351289	1206537321	PD9774b	11	78761281	T	G	ODZ4	CCDS44688.1	r.?	-	-	intronic	38	0	0	64	10	15.625	0	0	NA	0	0	NA	1.26776812	1	0	0.73223188	2	0	0.26776812	unphased	0.893653285	0.893653285	1	0	0.99875	0.00125	0	2	1.16E-12	1	1	1	NA	NA	NA	NA
1351289	1206537406	PD9774b	11	80382791	C	G	-	-	-	-	-	-	36	0	0	58	16	27.5862069	0	0	NA	0	0	NA	1.26776812	1	0	0.73223188	2	0	0.26776812	unphased	1.577760282	1.244518029	1.26776812	0	0.99875	0.00125	0	2	1.00E-23	1	1	1	NA	NA	NA	NA
1351289	1206537408	PD9774b	11	80403373	A	G	-	-	-	-	-	-	26	0	0	54	20	37.03703704	207	0	0	250	39	15.6	1.26776812	1	0	0.73223188	2	0	0.26776812	unphased	2.118289268	1.670880687	1.26776812	0	0.915	0.085	0	2	2.61E-32	1	4.61E-45	1	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206537499	PD9774b	11	81397199	C	G	-	-	-	-	-	-	41	0	0	36	8	22.22222222	0	0	NA	0	0	NA	1.26776812	1	0	0.73223188	2	0	0.26776812	unphased	1.270973561	1.270973561	1	0	0.99875	0.00125	0	2	1.04E-11	1	1	1	NA	NA	NA	NA
1351289	1206537548	PD9774b	11	82027471	A	G	AP002802.1	ENST00000500502	r.?	-	-	intronic	37	0	0	62	14	22.58064516	0	0	NA	0	0	NA	1.26776812	1	0	0.73223188	2	0	0.26776812	unphased	1.291473134	1.291473134	1	0	0.995	0.005	0	2	1.42E-19	1	1	1	NA	NA	NA	NA
1351289	1206537586	PD9774b	11	82496303	C	G	-	-	-	-	-	-	28	0	0	54	9	16.66666667	0	0	NA	0	0	NA	1.26776812	1	0	0.73223188	2	0	0.26776812	unphased	0.953230171	0.953230171	1	0	1	0	0	2	8.48E-12	1	1	1	NA	NA	NA	NA
1351289	1206537664	PD9774b	11	83413958	C	G	DLG2	CCDS41696.1	r.?	-	-	intronic	23	0	0	64	10	15.625	277	0	0	270	61	22.59259259	1.26776812	1	0	0.73223188	2	0	0.26776812	unphased	0.893653285	0.893653285	1	0	1	0	0	2	1.16E-12	1	4.03E-80	1	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206537792	PD9774b	11	85444238	C	G	SYTL2	CCDS31649.1	r.?	-	-	intronic	27	0	0	51	5	9.803921569	159	0	0	157	4	2.547770701	1.26776812	1	0	0.73223188	2	0	0.26776812	unphased	0.56072363	0.56072363	1	0.00875	0.99125	0	0	2	6.06E-06	1	0.008313184	1	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206537989	PD9774b	11	87565651	T	G	-	-	-	-	-	-	33	0	0	51	9	17.64705882	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.962049336	0.962049336	1	0.0025	0.99375	0.00375	0	2	4.92E-12	1	1	1	NA	NA	NA	NA
1351289	1206538218	PD9774b	11	90690947	A	G	-	-	-	-	-	-	27	0	0	51	8	15.68627451	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.855154965	0.855154965	1	0.0025	0.99625	0.00125	0	2	2.05E-10	1	1	1	NA	NA	NA	NA
1351289	1206538271	PD9774b	11	91230779	A	G	-	-	-	-	-	-	34	0	0	54	9	16.66666667	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.908602151	0.908602151	1	0	1	0	0	2	8.48E-12	1	1	1	NA	NA	NA	NA
1351289	1206538281	PD9774b	11	91343129	C	G	-	-	-	-	-	-	20	0	0	56	4	7.142857143	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.389400922	0.389400922	1	0.01875	0.98125	0	0	2	0.000186538	1	1	1	NA	NA	NA	NA
1351289	1206538296	PD9774b	11	91607876	T	G	-	-	-	-	-	-	27	0	0	56	12	21.42857143	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.168202765	1.168202765	1	0.0025	0.99625	0.00125	0	2	1.11E-16	1	1	1	NA	NA	NA	NA
1351289	1206538380	PD9774b	11	92570658	A	G	FAT3	CCDS44706.1	r.?	-	-	intronic	30	0	0	46	8	17.39130435	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.948106592	0.948106592	1	0.00125	0.9975	0.00125	0	2	8.61E-11	1	1	1	NA	NA	NA	NA
1351289	1206538580	PD9774b	11	95349040	C	G	-	-	-	-	-	-	33	0	0	43	7	16.27906977	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.887471868	0.887471868	1	0.0025	0.9975	0	0	2	2.15E-09	1	1	1	NA	NA	NA	NA
1351289	1206538806	PD9774b	11	97965040	C	G	-	-	-	-	-	-	41	0	0	49	4	8.163265306	0	0	NA	0	0	NA	1.238591577	1	0	0.761408423	2	0	0.238591577	unphased	0.464506488	0.464506488	1	0.01625	0.98375	0	0	2	0.000110643	1	1	1	NA	NA	NA	NA
1351289	1206538902	PD9774b	11	99042054	T	G	-	-	-	-	-	-	33	0	0	59	14	23.72881356	0	0	NA	0	0	NA	1.238591577	1	0	0.761408423	2	0	0.238591577	unphased	1.350218012	1.350218012	1	0	0.99375	0.00625	0	2	6.58E-20	1	1	1	NA	NA	NA	NA
1351289	1206538905	PD9774b	11	99083032	C	G	-	-	-	-	-	-	40	0	0	43	8	18.60465116	0	0	NA	0	0	NA	1.238591577	1	0	0.761408423	2	0	0.238591577	unphased	1.058642694	1.058642694	1	0	1	0	0	2	4.85E-11	1	1	1	NA	NA	NA	NA
1351289	1206539257	PD9774b	11	102899967	A	G	-	-	-	-	-	-	35	0	0	46	13	28.26086957	0	0	NA	0	0	NA	1.238591577	1	0	0.761408423	2	0	0.238591577	unphased	1.608101266	1.298330536	1.238591577	0	0.9975	0.0025	0	2	1.07E-19	1	1	1	NA	NA	NA	NA
1351289	1206539323	PD9774b	11	103797841	C	G	PDGFD	CCDS41703.1	r.1158g>c	c.786G>C	p.R262S	missense	40	0	0	54	4	7.407407407	0	0	NA	0	0	NA	1.238591577	1	0	0.761408423	2	0	0.238591577	unphased	0.421496628	0.421496628	1	0.01375	0.98625	0	0	2	0.000161898	1	1	1	NA	NA	NA	NA
1351289	1206539331	PD9774b	11	103939934	C	G	PDGFD	CCDS41703.1	r.?	-	-	intronic	34	0	0	62	7	11.29032258	0	0	NA	0	0	NA	1.238591577	1	0	0.761408423	2	0	0.238591577	unphased	0.642442441	0.642442441	1	0.005	0.995	0	0	2	3.02E-08	1	1	1	NA	NA	NA	NA
1351289	1206539523	PD9774b	11	106772718	C	G	GUCY1A2	CCDS8335.1	r.?	-	-	intronic	40	0	0	69	23	33.33333333	0	0	NA	0	0	NA	1.238591577	1	0	0.761408423	2	0	0.238591577	unphased	1.896734827	1.531364222	1.238591577	0	0.9625	0.0375	0	2	1.15E-35	1	1	1	NA	NA	NA	NA
1351289	1206539525	PD9774b	11	106791398	A	G	GUCY1A2	CCDS8335.1	r.?	-	-	intronic	37	0	0	60	5	8.333333333	0	0	NA	0	0	NA	1.238591577	1	0	0.761408423	2	0	0.238591577	unphased	0.474183707	0.474183707	1	0.0125	0.9875	0	0	2	1.36E-05	1	1	1	NA	NA	NA	NA
1351289	1206539642	PD9774b	11	108201157	T	G	ATM	CCDS31669.1	r.7900+9u>g	c.7515+9T>G	p.?	splice region	39	0	0	56	7	12.5	300	0	0	327	40	12.2324159	1.238591577	1	0	0.761408423	2	0	0.238591577	unphased	0.71127556	0.71127556	1	0.0025	0.9975	0	0	2	1.46E-08	1	8.70E-42	1	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206540026	PD9774b	11	113141920	C	G	NCAM1	ENST00000316851	r.?	-	-	intronic	22	0	0	43	5	11.62790698	0	0	NA	0	0	NA	1.238591577	1	0	0.761408423	2	0	0.238591577	unphased	0.661651684	0.661651684	1	0.005	0.995	0	0	2	2.57E-06	1	1	1	NA	NA	NA	NA
1351289	1206540039	PD9774b	11	113439597	C	G	-	-	-	-	-	-	31	0	0	36	5	13.88888889	0	0	NA	0	0	NA	1.238591577	1	0	0.761408423	2	0	0.238591577	unphased	0.790306178	0.790306178	1	0.0025	0.9975	0	0	2	1.04E-06	1	1	1	NA	NA	NA	NA
1351289	1206540088	PD9774b	11	113934776	C	G	ZBTB16	CCDS8367.1	r.1134c>g	c.754C>G	p.P252A	missense	35	0	0	46	8	17.39130435	99	0	0	107	92	85.98130841	1.238591577	1	0	0.761408423	2	0	0.238591577	unphased	0.989600779	0.989600779	1	0	0.99875	0.00125	0	2	8.61E-11	1	1.41E-194	1	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206540195	PD9774b	11	114997198	T	G	-	-	-	-	-	-	40	0	0	51	12	23.52941176	0	0	NA	0	0	NA	1.238591577	1	0	0.761408423	2	0	0.238591577	unphased	1.338871642	1.338871642	1	0	0.99625	0.00375	0	2	3.24E-17	1	1	1	NA	NA	NA	NA
1351289	1206540546	PD9774b	11	118668765	C	G	-	-	-	-	-	-	30	0	0	63	4	6.349206349	0	0	NA	0	0	NA	1.238591577	1	0	0.761408423	2	0	0.238591577	unphased	0.361282824	1.514231262	0.238591577	0	0.99	0.01	0	2	0.000294233	1	1	1	NA	NA	NA	NA
1351289	1206540622	PD9774b	11	119366149	C	G	AP003395.1	ENST00000498979	r.?	-	-	intronic	27	0	0	37	4	10.81081081	0	0	NA	0	0	NA	1.238591577	1	0	0.761408423	2	0	0.238591577	unphased	0.615157241	0.615157241	1	0.00125	0.99625	0.0025	0	2	3.62E-05	1	1	1	NA	NA	NA	NA
1351289	1206541117	PD9774b	11	124069098	A	G	-	-	-	-	-	-	32	0	0	43	10	23.25581395	0	0	NA	0	0	NA	1.238591577	1	0	0.761408423	2	0	0.238591577	unphased	1.323303367	1.323303367	1	0	0.995	0.005	0	2	1.61E-14	1	1	1	NA	NA	NA	NA
1351289	1206541341	PD9774b	11	127045983	A	G	-	-	-	-	-	-	18	0	0	57	7	12.28070175	0	0	NA	0	0	NA	1.238591577	1	0	0.761408423	2	0	0.238591577	unphased	0.698797041	0.698797041	1	0.00125	0.99875	0	0	2	1.66E-08	1	1	1	NA	NA	NA	NA
1351289	1206541458	PD9774b	11	128930337	A	G	ARHGAP32	CCDS44769.1	r.?	-	-	intronic	36	0	0	43	7	16.27906977	0	0	NA	0	0	NA	1.238591577	1	0	0.761408423	2	0	0.238591577	unphased	0.926312357	0.926312357	1	0	1	0	0	2	2.15E-09	1	1	1	NA	NA	NA	NA
1351289	1206541593	PD9774b	11	130851220	A	G	-	-	-	-	-	-	41	0	0	50	14	28	0	0	NA	0	0	NA	1.238591577	1	0	0.761408423	2	0	0.238591577	unphased	1.593257254	1.286345947	1.238591577	0	0.99625	0.00375	0	2	4.84E-21	1	1	1	NA	NA	NA	NA
1351289	1206541609	PD9774b	11	131153626	T	G	-	-	-	-	-	-	43	0	0	42	7	16.66666667	1	0	0	0	0	NA	1.238591577	1	0	0.761408423	2	0	0.238591577	unphased	0.948367413	0.948367413	1	0.0025	0.9975	0	0	2	1.81E-09	1	1	1	NA	NA	NA	NA
1351289	1206541652	PD9774b	11	131534551	A	G	OPCML	CCDS41733.1	r.?	-	-	intronic	36	0	0	46	10	21.73913043	0	0	NA	0	0	NA	1.238591577	1	0	0.761408423	2	0	0.238591577	unphased	1.237000974	1.237000974	1	0	0.99875	0.00125	0	2	3.38E-14	1	1	1	NA	NA	NA	NA
1351289	1206541699	PD9774b	11	132285383	A	G	ENSG00000183715	CCDS8492.1	r.?	-	-	downstream	41	0	0	55	12	21.81818182	0	0	NA	0	0	NA	1.238591577	1	0	0.761408423	2	0	0.238591577	unphased	1.241499159	1.241499159	1	0	0.99875	0.00125	0	2	8.78E-17	1	1	1	NA	NA	NA	NA
1351289	1206541771	PD9774b	11	133394694	C	G	ENSG00000183715	CCDS31722.1	r.?	-	-	intronic	25	0	0	52	10	19.23076923	0	0	NA	0	0	NA	1.238591577	1	0	0.761408423	2	0	0.238591577	unphased	1.094270092	1.094270092	1	0	1	0	0	2	1.28E-13	1	1	1	NA	NA	NA	NA
1351289	1206542023	PD9774b	12	538556	C	G	CCDC77	CCDS8503.1	r.?	-	-	intronic	40	0	0	57	22	38.59649123	0	0	NA	0	0	NA	2	2	0	1	NA	NA	NA	unphased	2.490096208	1.245048104	2	0	1	0	0	2	7.03E-36	1	1	1	NA	NA	NA	NA
1351289	1206542042	PD9774b	12	673580	C	G	NINJ2	CCDS8505.1	r.944g>c	c.?	p.?	3'UTR variant	31	0	0	59	8	13.55932203	0	0	NA	0	0	NA	2	2	0	1	NA	NA	NA	unphased	0.87479497	0.87479497	1	0.00375	0.99625	0	0	2	6.90E-10	1	1	1	NA	NA	NA	NA
1351289	1206542326	PD9774b	12	3055298	C	G	-	-	-	-	-	-	36	0	0	57	10	17.54385965	0	0	NA	0	0	NA	2	2	0	1	NA	NA	NA	unphased	1.131861913	1.131861913	1	0	1	0	0	2	3.40E-13	1	1	1	NA	NA	NA	NA
1351289	1206542368	PD9774b	12	3548750	T	G	-	-	-	-	-	-	32	0	0	49	5	10.20408163	0	0	NA	0	0	NA	2	2	0	1	NA	NA	NA	unphased	0.658327847	0.658327847	1	0.005	0.995	0	0	2	4.96E-06	1	1	1	NA	NA	NA	NA
1351289	1206542564	PD9774b	12	5805729	C	G	ANO2	CCDS44807.1	r.?	-	-	intronic	32	0	0	55	19	34.54545455	0	0	NA	0	0	NA	2	2	0	1	NA	NA	NA	unphased	2.228739003	1.114369501	2	0	0.9975	0.0025	0	2	4.51E-30	1	1	1	NA	NA	NA	NA
1351289	1206542691	PD9774b	12	6675914	C	G	CHD4	CCDS8552.1	r.?	-	-	downstream	42	0	0	61	8	13.1147541	0	0	NA	0	0	NA	2	2	0	1	NA	NA	NA	unphased	0.846113168	0.846113168	1	0.00125	0.99875	0	0	2	9.09E-10	1	1	1	NA	NA	NA	NA
1351289	1206542729	PD9774b	12	6923173	T	G	CD4	CCDS8562.1	r.?	-	-	intronic	38	0	0	54	4	7.407407407	0	0	NA	0	0	NA	2	2	0	1	NA	NA	NA	unphased	0.477897252	0.477897252	1	0.01875	0.98125	0	0	2	0.000161898	1	1	1	NA	NA	NA	NA
1351289	1206542748	PD9774b	12	7118653	T	G	C1S	CCDS31735.1	r.?	-	-	intronic	26	0	0	47	4	8.510638298	0	0	NA	0	0	NA	2	2	0	1	NA	NA	NA	unphased	0.549073439	0.549073439	1	0.0075	0.99125	0.00125	0	2	9.39E-05	1	1	1	NA	NA	NA	NA
1351289	1206542887	PD9774b	12	8272714	T	G	ZNF705A	CCDS31737.1	r.?	-	-	upstream	30	0	0	63	11	17.46031746	0	0	NA	0	0	NA	2	2	0	1	NA	NA	NA	unphased	1.126472094	1.126472094	1	0	0.99875	0.00125	0	2	2.37E-14	1	1	1	NA	NA	NA	NA
1351289	1206542892	PD9774b	12	8312037	C	G	ZNF705A	CCDS31737.1	r.?	-	-	intronic	31	0	0	62	15	24.19354839	0	0	NA	0	0	NA	2	2	0	1	NA	NA	NA	unphased	1.560874089	0.780437045	2	0.00125	0.99875	0	0	2	2.28E-21	1	1	1	NA	NA	NA	NA
1351289	1206543568	PD9774b	12	14159585	C	G	-	-	-	-	-	-	36	0	0	58	7	12.06896552	0	0	NA	0	0	NA	1.283669778	1	0	0.716330222	2	0	0.283669778	unphased	0.692189289	0.692189289	1	0.0025	0.9975	0	0	2	1.88E-08	1	1	1	NA	NA	NA	NA
1351289	1206543749	PD9774b	12	16235775	C	G	-	-	-	-	-	-	36	0	0	39	8	20.51282051	0	0	NA	0	0	NA	1.283669778	1	0	0.716330222	2	0	0.283669778	unphased	1.176468242	1.176468242	1	0	1	0	0	2	2.09E-11	1	1	1	NA	NA	NA	NA
1351289	1206544144	PD9774b	12	20927949	C	G	-	-	-	-	-	-	37	0	0	44	10	22.72727273	0	0	NA	1	1	100	1.283669778	1	0	0.716330222	2	0	0.283669778	unphased	1.303473337	1.303473337	1	0	0.995	0.005	0	2	2.08E-14	1	0.005	1	NA	NA	NA	NA
1351289	1206544268	PD9774b	12	22547681	T	G	-	-	-	-	-	-	34	0	0	63	13	20.63492063	0	0	NA	0	0	NA	1.283669778	1	0	0.716330222	2	0	0.283669778	unphased	1.183471029	1.183471029	1	0	0.99875	0.00125	0	2	1.01E-17	1	1	1	NA	NA	NA	NA
1351289	1206544527	PD9774b	12	25699575	C	G	IFLTD1	CCDS44849.1	r.?	-	-	intronic	35	0	0	54	5	9.259259259	0	0	NA	0	0	NA	1.283669778	1	0	0.716330222	2	0	0.283669778	unphased	0.531044693	0.531044693	1	0.00375	0.99625	0	0	2	8.06E-06	1	1	1	NA	NA	NA	NA
1351289	1206544919	PD9774b	12	29960955	A	G	-	-	-	-	-	-	38	0	0	65	10	15.38461538	0	0	NA	0	0	NA	1.283669778	1	0	0.716330222	2	0	0.283669778	unphased	0.882351182	0.882351182	1	0	1	0	0	2	1.36E-12	1	1	1	NA	NA	NA	NA
1351289	1206544928	PD9774b	12	30162390	C	G	-	-	-	-	-	-	32	0	0	56	8	14.28571429	0	0	NA	0	0	NA	1.283669778	1	0	0.716330222	2	0	0.283669778	unphased	0.819326097	0.819326097	1	0.00375	0.99625	0	0	2	4.48E-10	1	1	1	NA	NA	NA	NA
1351289	1206545412	PD9774b	12	34494482	A	G	-	-	-	-	-	-	27	0	0	29	7	24.13793103	0	0	NA	0	0	NA	1.283669778	1	0	0.716330222	2	0	0.283669778	unphased	1.384378578	1.384378578	1	0	0.98625	0.01375	0	2	1.11E-10	1	1	1	NA	NA	NA	NA
1351289	1206546711	PD9774b	12	39221810	A	G	CPNE8	CCDS8733.1	r.?	-	-	intronic	30	0	0	48	10	20.83333333	0	0	NA	0	0	NA	0.857682244	0	0	0.142317756	1	0	0.857682244	unphased	1.106103156	1.106103156	1	0	0.9975	0.0025	0	2	5.37E-14	1	1	1	NA	NA	NA	NA
1351289	1206546818	PD9774b	12	40573833	A	G	-	-	-	-	-	-	28	0	0	48	8	16.66666667	0	0	NA	0	0	NA	0.857682244	0	0	0.142317756	1	0	0.857682244	unphased	0.884882525	1.031713703	0.857682244	0.00125	0.99875	0	0	2	1.23E-10	1	1	1	NA	NA	NA	NA
1351289	1206546834	PD9774b	12	40716189	C	G	LRRK2	CCDS31774.1	r.5444c>g	c.5386C>G	p.L1796V	missense	35	0	0	38	4	10.52631579	0	0	NA	0	0	NA	0.857682244	0	0	0.142317756	1	0	0.857682244	unphased	0.558873173	0.651608655	0.857682244	0.00375	0.99625	0	0	2	4.03E-05	1	1	1	NA	NA	NA	NA
1351289	1206548369	PD9774b	12	58441171	C	G	-	-	-	-	-	-	25	0	0	47	9	19.14893617	0	0	NA	0	0	NA	0.857682244	0	0	0.142317756	1	0	0.857682244	unphased	1.016673539	1.016673539	1	0	1	0	0	2	2.24E-12	1	1	1	NA	NA	NA	NA
1351289	1206548378	PD9774b	12	58564601	C	G	-	-	-	-	-	-	29	0	0	38	9	23.68421053	0	0	NA	0	0	NA	0.857682244	0	0	0.142317756	1	0	0.857682244	unphased	1.25746464	1.25746464	1	0	0.99875	0.00125	0	2	2.79E-13	1	1	1	NA	NA	NA	NA
1351289	1206548501	PD9774b	12	60288175	C	G	-	-	-	-	-	-	45	0	0	53	4	7.547169811	0	0	NA	0	0	NA	0.857682244	0	0	0.142317756	1	0	0.857682244	unphased	0.400701521	0.467191111	0.857682244	0.0125	0.9875	0	0	2	0.000150502	1	1	1	NA	NA	NA	NA
1351289	1206548651	PD9774b	12	62658929	C	G	USP15	CCDS8963.1	r.?	-	-	intronic	41	0	0	58	6	10.34482759	0	0	NA	0	0	NA	0.857682244	0	0	0.142317756	1	0	0.857682244	unphased	0.549237429	0.640374023	0.857682244	0.005	0.995	0	0	2	5.06E-07	1	1	1	NA	NA	NA	NA
1351289	1206548680	PD9774b	12	63108714	C	G	PPM1H	CCDS44934.1	r.?	-	-	intronic	37	0	0	29	6	20.68965517	0	0	NA	0	0	NA	0.857682244	0	0	0.142317756	1	0	0.857682244	unphased	1.098474858	1.098474858	1	0	0.9975	0.0025	0	2	6.72E-09	1	1	1	NA	NA	NA	NA
1351289	1206548707	PD9774b	12	63523401	A	G	-	-	-	-	-	-	36	0	0	57	12	21.05263158	0	0	NA	0	0	NA	0.857682244	0	0	0.142317756	1	0	0.857682244	unphased	1.117746347	1.117746347	1	0	0.99875	0.00125	0	2	1.40E-16	1	1	1	NA	NA	NA	NA
1351289	1206548874	PD9774b	12	65241026	C	G	TBC1D30	ENST00000229088	r.?	-	-	intronic	27	0	0	28	4	14.28571429	0	0	NA	0	0	NA	0.857682244	0	0	0.142317756	1	0	0.857682244	unphased	0.758470735	0.884326032	0.857682244	0.00375	0.99625	0	0	2	1.16E-05	1	1	1	NA	NA	NA	NA
1351289	1206548875	PD9774b	12	65248810	C	G	TBC1D30	ENST00000229088	r.?	-	-	intronic	33	0	0	52	4	7.692307692	0	0	NA	0	0	NA	0.857682244	0	0	0.142317756	1	0	0.857682244	unphased	0.408407319	0.476175555	0.857682244	0.0075	0.9925	0	0	2	0.000139698	1	1	1	NA	NA	NA	NA
1351289	1206549439	PD9774b	12	72599354	A	G	-	-	-	-	-	-	29	0	0	53	8	15.09433962	0	0	NA	0	0	NA	0.853446383	0	0	0.146553617	1	0	0.853446383	unphased	0.800763666	0.938270619	0.853446383	0	0.99875	0.00125	0	2	2.83E-10	1	1	1	NA	NA	NA	NA
1351289	1206549509	PD9774b	12	73757471	A	G	-	-	-	-	-	-	39	0	0	52	10	19.23076923	0	0	NA	0	0	NA	0.853446383	0	0	0.146553617	1	0	0.853446383	unphased	1.020203709	1.020203709	1	0.0025	0.9975	0	0	2	1.28E-13	1	1	1	NA	NA	NA	NA
1351289	1206549532	PD9774b	12	73920194	A	G	-	-	-	-	-	-	36	0	0	51	12	23.52941176	0	0	NA	0	0	NA	0.853446383	0	0	0.146553617	1	0	0.853446383	unphased	1.248249244	1.248249244	1	0	0.9975	0.0025	0	2	3.24E-17	1	1	1	NA	NA	NA	NA
1351289	1206550001	PD9774b	12	81246101	A	G	LIN7A	CCDS9021.1	r.?	-	-	intronic	48	0	0	57	8	14.03508772	0	0	NA	0	0	NA	0.853446383	0	0	0.146553617	1	0	0.853446383	unphased	0.744569724	0.872427067	0.853446383	0	1	0	0	2	5.19E-10	1	1	1	NA	NA	NA	NA
1351289	1206550537	PD9774b	12	88698033	A	G	-	-	-	-	-	-	40	0	0	33	9	27.27272727	0	0	NA	0	0	NA	0.853446383	0	0	0.146553617	1	0	0.853446383	unphased	1.446834351	1.446834351	1	0	0.99375	0.00625	0	2	6.76E-14	1	1	1	NA	NA	NA	NA
1351289	1206550589	PD9774b	12	89501190	C	G	-	-	-	-	-	-	25	0	0	50	5	10	0	0	NA	0	0	NA	0.853446383	0	0	0.146553617	1	0	0.853446383	unphased	0.530505929	0.621604285	0.853446383	0.00375	0.99625	0	0	2	5.49E-06	1	1	1	NA	NA	NA	NA
1351289	1206550820	PD9774b	12	92671831	C	G	-	-	-	-	-	-	37	0	0	48	9	18.75	0	0	NA	0	0	NA	0.853446383	0	0	0.146553617	1	0	0.853446383	unphased	0.994698616	0.994698616	1	0	1	0	0	2	2.75E-12	1	1	1	NA	NA	NA	NA
1351289	1206550885	PD9774b	12	93474067	A	G	-	-	-	-	-	-	22	0	0	45	4	8.888888889	0	0	NA	0	0	NA	0.853446383	0	0	0.146553617	1	0	0.853446383	unphased	0.471560825	0.552537142	0.853446383	0.0075	0.99125	0.00125	0	2	7.91E-05	1	1	1	NA	NA	NA	NA
1351289	1206551075	PD9774b	12	96020327	C	G	-	-	-	-	-	-	41	0	0	45	7	15.55555556	0	0	NA	0	0	NA	0.853446383	0	0	0.146553617	1	0	0.853446383	unphased	0.825231444	0.966939999	0.853446383	0	0.99875	0.00125	0	2	3.00E-09	1	1	1	NA	NA	NA	NA
1351289	1206551634	PD9774b	12	103615398	T	G	-	-	-	-	-	-	35	0	0	53	11	20.75471698	0	0	NA	0	0	NA	0.853446383	0	0	0.146553617	1	0	0.853446383	unphased	1.10105004	1.10105004	1	0	0.99875	0.00125	0	2	3.07E-15	1	1	1	NA	NA	NA	NA
1351289	1206552011	PD9774b	12	109135816	C	G	-	-	-	-	-	-	23	0	0	46	7	15.2173913	0	0	NA	0	0	NA	0.853446383	0	0	0.146553617	1	0	0.853446383	unphased	0.80729163	0.945919564	0.853446383	0	1	0	0	2	3.53E-09	1	1	1	NA	NA	NA	NA
1351289	1206553510	PD9774b	12	126771734	T	G	-	-	-	-	-	-	28	0	0	45	12	26.66666667	0	0	NA	0	0	NA	0.853446383	0	0	0.146553617	1	0	0.853446383	unphased	1.414682476	1.414682476	1	0	0.98875	0.01125	0	2	6.03E-18	1	1	1	NA	NA	NA	NA
1351289	1206553512	PD9774b	12	126800843	T	G	-	-	-	-	-	-	35	0	0	55	4	7.272727273	0	0	NA	0	0	NA	0.853446383	0	0	0.146553617	1	0	0.853446383	unphased	0.385822494	0.452075844	0.853446383	0.01125	0.9875	0.00125	0	2	0.000173903	1	1	1	NA	NA	NA	NA
1351289	1206553972	PD9774b	12	131107681	A	G	-	-	-	-	-	-	32	0	0	30	4	13.33333333	0	0	NA	0	0	NA	0.853446383	0	0	0.146553617	1	0	0.853446383	unphased	0.707341238	0.828805714	0.853446383	0.00375	0.99625	0	0	2	1.54E-05	1	1	1	NA	NA	NA	NA
1351289	1206554244	PD9774b	12	132848193	C	G	GALNT9	CCDS41866.1	r.?	-	-	intronic	23	0	0	28	6	21.42857143	0	0	NA	0	0	NA	0.853446383	0	0	0.146553617	1	0	0.853446383	unphased	1.136798418	1.136798418	1	0	1	0	0	2	5.36E-09	1	1	1	NA	NA	NA	NA
1351289	1206555002	PD9774b	13	21779452	C	G	-	-	-	-	-	-	27	0	0	43	4	9.302325581	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.414103526	0.414103526	1	0.01875	0.98125	0	0	2	6.60E-05	1	1	1	NA	NA	NA	NA
1351289	1206555050	PD9774b	13	22061608	T	G	-	-	-	-	-	-	42	0	0	44	6	13.63636364	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.607038123	0.607038123	1	0.00375	0.99625	0	0	2	9.37E-08	1	1	1	NA	NA	NA	NA
1351289	1206555422	PD9774b	13	25599417	T	G	-	-	-	-	-	-	35	0	0	43	3	6.976744186	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.310577644	0.310577644	1	0.03375	0.96625	0	0	2	0.001328364	1	1	1	NA	NA	NA	NA
1351289	1206555474	PD9774b	13	26234019	C	G	ATP8A2	CCDS41873.1	r.?	-	-	intronic	28	0	0	49	4	8.163265306	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.363396972	0.363396972	1	0.03125	0.96875	0	0	2	0.000110643	1	1	1	NA	NA	NA	NA
1351289	1206555764	PD9774b	13	29626705	A	G	MTUS2	CCDS45022.1	r.?	-	-	intronic	34	0	0	44	5	11.36363636	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.505865103	0.505865103	1	0.00625	0.9925	0.00125	0	2	2.88E-06	1	1	1	NA	NA	NA	NA
1351289	1206555797	PD9774b	13	29966530	C	G	MTUS2	CCDS45022.1	r.?	-	-	intronic	40	0	0	34	5	14.70588235	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.654648956	0.654648956	1	0.00125	0.99875	0	0	2	7.71E-07	1	1	1	NA	NA	NA	NA
1351289	1206556184	PD9774b	13	35014424	C	G	-	-	-	-	-	-	37	0	0	57	5	8.771929825	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.39049236	0.39049236	1	0.02875	0.97125	0	0	2	1.05E-05	1	1	1	NA	NA	NA	NA
1351289	1206556218	PD9774b	13	35540968	C	G	NBEA	CCDS45026.1	r.?	-	-	intronic	28	0	0	46	7	15.2173913	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.677419355	0.677419355	1	0.005	0.995	0	0	2	3.53E-09	1	1	1	NA	NA	NA	NA
1351289	1206556226	PD9774b	13	35660187	C	G	NBEA	CCDS45026.1	r.?	-	-	intronic	30	0	0	41	4	9.756097561	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.434303698	0.434303698	1	0.0225	0.9775	0	0	2	5.46E-05	1	1	1	NA	NA	NA	NA
1351289	1206556710	PD9774b	13	42271311	A	G	KIAA0564	CCDS41881.1	r.?	-	-	intronic	41	0	0	50	7	14	0	0	NA	0	0	NA	0.412209864	0	0	0.587790136	1	0	0.412209864	unphased	0.680935187	0.680935187	1	0.00375	0.99625	0	0	2	6.46E-09	1	1	1	NA	NA	NA	NA
1351289	1206557061	PD9774b	13	47055836	A	G	-	-	-	-	-	-	23	0	0	41	10	24.3902439	0	0	NA	0	0	NA	0.412209864	0	0	0.587790136	1	0	0.412209864	unphased	1.186298236	1.186298236	1	0	1	0	0	2	9.51E-15	1	1	1	NA	NA	NA	NA
1351289	1206557275	PD9774b	13	50260003	A	G	EBPL	CCDS9420.1	r.?	-	-	intronic	34	0	0	50	9	18	0	0	NA	0	0	NA	0.412209864	0	0	0.587790136	1	0	0.412209864	unphased	0.875488098	0.875488098	1	0	1	0	0	2	4.07E-12	1	1	1	NA	NA	NA	NA
1351289	1206557572	PD9774b	13	55420897	A	G	-	-	-	-	-	-	25	0	0	45	4	8.888888889	0	0	NA	0	0	NA	0.412209864	0	0	0.587790136	1	0	0.412209864	unphased	0.432339801	1.048834198	0.412209864	0.0025	0.99375	0.00375	0	2	7.91E-05	1	1	1	NA	NA	NA	NA
1351289	1206557775	PD9774b	13	58556186	A	G	-	-	-	-	-	-	32	0	0	47	4	8.510638298	0	0	NA	0	0	NA	0.412209864	0	0	0.587790136	1	0	0.412209864	unphased	0.413942363	1.004202955	0.412209864	0.00125	0.9975	0.00125	0	2	9.39E-05	1	1	1	NA	NA	NA	NA
1351289	1206557792	PD9774b	13	58846230	T	G	-	-	-	-	-	-	34	0	0	49	4	8.163265306	0	0	NA	0	0	NA	0.412209864	0	0	0.587790136	1	0	0.412209864	unphased	0.397046756	0.963215079	0.412209864	0	1	0	0	2	0.000110643	1	1	1	NA	NA	NA	NA
1351289	1206557851	PD9774b	13	59805135	A	G	-	-	-	-	-	-	34	0	0	34	6	17.64705882	0	0	NA	0	0	NA	0.412209864	0	0	0.587790136	1	0	0.412209864	unphased	0.858321665	0.858321665	1	0.0025	0.9975	0	0	2	1.86E-08	1	1	1	NA	NA	NA	NA
1351289	1206558007	PD9774b	13	61977050	C	G	-	-	-	-	-	-	27	0	0	47	5	10.63829787	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.579958819	0.579958819	1	0.00625	0.99375	0	0	2	4.02E-06	1	1	1	NA	NA	NA	NA
1351289	1206558559	PD9774b	13	66466169	A	G	-	-	-	-	-	-	37	0	0	57	7	12.28070175	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.669496321	0.669496321	1	0.0025	0.9975	0	0	2	1.66E-08	1	1	1	NA	NA	NA	NA
1351289	1206558563	PD9774b	13	66541905	C	G	-	-	-	-	-	-	38	0	0	51	4	7.843137255	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.427577483	0.427577483	1	0.01375	0.98625	0	0	2	0.000129466	1	1	1	NA	NA	NA	NA
1351289	1206558908	PD9774b	13	70218809	A	G	-	-	-	-	-	-	36	0	0	35	5	14.28571429	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.778801843	0.778801843	1	0.00125	0.99875	0	0	2	8.95E-07	1	1	1	NA	NA	NA	NA
1351289	1206559124	PD9774b	13	72929298	A	G	-	-	-	-	-	-	34	0	0	54	12	22.22222222	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.211469534	1.211469534	1	0	1	0	0	2	6.90E-17	1	1	1	NA	NA	NA	NA
1351289	1206559129	PD9774b	13	72969761	C	G	-	-	-	-	-	-	36	0	0	48	4	8.333333333	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.454301075	0.454301075	1	0.00875	0.99125	0	0	2	0.000102016	1	1	1	NA	NA	NA	NA
1351289	1206559183	PD9774b	13	73614575	C	G	-	-	-	-	-	-	29	0	0	46	6	13.04347826	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.711079944	0.711079944	1	0	1	0	0	2	1.23E-07	1	1	1	NA	NA	NA	NA
1351289	1206559225	PD9774b	13	74144139	A	G	-	-	-	-	-	-	29	0	0	47	4	8.510638298	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.463967056	0.463967056	1	0.00875	0.99125	0	0	2	9.39E-05	1	1	1	NA	NA	NA	NA
1351289	1206559369	PD9774b	13	75903624	C	G	TBC1D4	CCDS41901.1	r.?	-	-	intronic	38	0	0	49	6	12.24489796	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.667544437	0.667544437	1	0.0025	0.9975	0	0	2	1.82E-07	1	1	1	NA	NA	NA	NA
1351289	1206559488	PD9774b	13	77335846	C	G	-	-	-	-	-	-	25	0	0	40	5	12.5	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.681451613	0.681451613	1	0.00375	0.99625	0	0	2	1.78E-06	1	1	1	NA	NA	NA	NA
1351289	1206559601	PD9774b	13	78671399	A	G	-	-	-	-	-	-	37	0	0	44	4	9.090909091	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.495601173	0.495601173	1	0.01125	0.98875	0	0	2	7.23E-05	1	1	1	NA	NA	NA	NA
1351289	1206559641	PD9774b	13	79376416	T	G	-	-	-	-	-	-	40	0	0	50	13	26	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.417419355	1.417419355	1	0	0.98875	0.01125	0	2	3.65E-19	1	1	1	NA	NA	NA	NA
1351289	1206559855	PD9774b	13	82189336	C	G	-	-	-	-	-	-	32	0	0	45	6	13.33333333	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.72688172	0.72688172	1	0.0025	0.9975	0	0	2	1.08E-07	1	1	1	NA	NA	NA	NA
1351289	1206559879	PD9774b	13	82452127	C	G	-	-	-	-	-	-	36	0	0	55	11	20	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.090322581	1.090322581	1	0.0025	0.99625	0.00125	0	2	4.77E-15	1	1	1	NA	NA	NA	NA
1351289	1206560064	PD9774b	13	85504641	C	G	-	-	-	-	-	-	40	0	0	43	7	16.27906977	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.887471868	0.887471868	1	0.00375	0.99625	0	0	2	2.15E-09	1	1	1	NA	NA	NA	NA
1351289	1206560511	PD9774b	13	90995000	C	G	-	-	-	-	-	-	38	0	0	54	7	12.96296296	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.706690562	0.706690562	1	0.00375	0.99625	0	0	2	1.13E-08	1	1	1	NA	NA	NA	NA
1351289	1206560571	PD9774b	13	91728216	C	G	-	-	-	-	-	-	34	0	0	42	6	14.28571429	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.778801843	0.778801843	1	0.00125	0.99875	0	0	2	7.02E-08	1	1	1	NA	NA	NA	NA
1351289	1206560628	PD9774b	13	92616414	C	G	GPC5	CCDS9468.1	r.?	-	-	intronic	34	0	0	38	4	10.52631579	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.57385399	0.57385399	1	0.00875	0.99125	0	0	2	4.03E-05	1	1	1	NA	NA	NA	NA
1351289	1206560679	PD9774b	13	93195264	C	G	GPC5	CCDS9468.1	r.?	-	-	intronic	33	0	0	53	5	9.433962264	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.514303104	0.514303104	1	0.01125	0.98875	0	0	2	7.34E-06	1	1	1	NA	NA	NA	NA
1351289	1206561056	PD9774b	13	98752129	C	G	-	-	-	-	-	-	28	0	0	57	4	7.01754386	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.382569327	0.382569327	1	0.0225	0.9775	0	0	2	0.000199821	1	1	1	NA	NA	NA	NA
1351289	1206561290	PD9774b	13	101200248	T	G	A2LD1	CCDS45066.1	r.?	-	-	intronic	35	0	0	60	5	8.333333333	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.454301075	0.454301075	1	0.01375	0.98625	0	0	2	1.36E-05	1	1	1	NA	NA	NA	NA
1351289	1206561330	PD9774b	13	101777838	C	G	NALCN	CCDS9498.1	r.?	-	-	intronic	33	0	0	56	5	8.928571429	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.486751152	0.486751152	1	0.0125	0.9875	0	0	2	9.65E-06	1	1	1	NA	NA	NA	NA
1351289	1206561331	PD9774b	13	101781370	C	G	NALCN	CCDS9498.1	r.?	-	-	intronic	33	0	0	51	4	7.843137255	1	0	0	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.427577483	0.427577483	1	0.0125	0.9875	0	0	2	0.000129466	1	1	1	NA	NA	NA	NA
1351289	1206561345	PD9774b	13	102090495	C	G	-	-	-	-	-	-	33	0	0	51	9	17.64705882	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.962049336	0.962049336	1	0.0025	0.99625	0.00125	0	2	4.92E-12	1	1	1	NA	NA	NA	NA
1351289	1206561383	PD9774b	13	102692677	C	G	FGF14	CCDS9500.1	r.?	-	-	intronic	41	0	0	61	7	11.47540984	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.625594923	0.625594923	1	0	1	0	0	2	2.69E-08	1	1	1	NA	NA	NA	NA
1351289	1206561400	PD9774b	13	103063314	A	G	-	-	-	-	-	-	37	0	0	61	7	11.47540984	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.625594923	0.625594923	1	0.00375	0.99625	0	0	2	2.69E-08	1	1	1	NA	NA	NA	NA
1351289	1206561581	PD9774b	13	105606232	A	G	-	-	-	-	-	-	37	0	0	41	5	12.19512195	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.664830842	0.664830842	1	0.00125	0.99875	0	0	2	2.02E-06	1	1	1	NA	NA	NA	NA
1351289	1206562215	PD9774b	13	113407021	A	G	ATP11A	CCDS32011.1	r.?	-	-	intronic	31	0	0	52	7	13.46153846	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.733870968	0.733870968	1	0.0025	0.9975	0	0	2	8.58E-09	1	1	1	NA	NA	NA	NA
1351289	1206563277	PD9774b	14	19310673	C	G	-	-	-	-	-	-	19	0	0	23	3	13.04347826	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.841514727	0.841514727	1	0.005	0.995	0	0	2	0.000205387	1	1	1	NA	NA	NA	NA
1351289	1206563575	PD9774b	14	20360655	T	G	-	-	-	-	-	-	34	0	0	50	5	10	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.64516129	0.64516129	1	0.00375	0.99625	0	0	2	5.49E-06	1	1	1	NA	NA	NA	NA
1351289	1206563669	PD9774b	14	21330531	A	G	-	-	-	-	-	-	36	0	0	53	10	18.86792453	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.217285453	1.217285453	1	0	1	0	0	2	1.57E-13	1	1	1	NA	NA	NA	NA
1351289	1206563727	PD9774b	14	21772127	A	G	RPGRIP1	CCDS45080.1	r.?	-	-	intronic	40	0	0	48	6	12.5	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.806451613	0.806451613	1	0	1	0	0	2	1.60E-07	1	1	1	NA	NA	NA	NA
1351289	1206563787	PD9774b	14	22593970	C	G	TRAC	ENST00000446346	r.?	-	-	intronic	18	0	0	47	6	12.76595745	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.823610158	0.823610158	1	0.0025	0.9975	0	0	2	1.41E-07	1	1	1	NA	NA	NA	NA
1351289	1206563856	PD9774b	14	23309554	T	G	MMP14	CCDS9577.1	r.?	-	-	intronic	30	0	0	47	4	8.510638298	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.549073439	0.549073439	1	0.0075	0.9925	0	0	2	9.39E-05	1	1	1	NA	NA	NA	NA
1351289	1206564154	PD9774b	14	26601508	A	G	-	-	-	-	-	-	39	0	0	55	5	9.090909091	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.586510264	0.586510264	1	0.00375	0.99625	0	0	2	8.83E-06	1	1	1	NA	NA	NA	NA
1351289	1206564372	PD9774b	14	28586203	T	G	-	-	-	-	-	-	38	0	0	40	3	7.5	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.483870968	0.483870968	1	0.0075	0.9925	0	0	2	0.001075403	1	1	1	NA	NA	NA	NA
1351289	1206564408	PD9774b	14	29165982	C	G	-	-	-	-	-	-	40	0	0	60	7	11.66666667	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.752688172	0.752688172	1	0.0025	0.9975	0	0	2	2.39E-08	1	1	1	NA	NA	NA	NA
1351289	1206564706	PD9774b	14	33276392	C	G	AKAP6	CCDS9644.1	r.?	-	-	intronic	34	0	0	41	7	17.07317073	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.101494886	1.101494886	1	0.00125	0.99875	0	0	2	1.51E-09	1	1	1	NA	NA	NA	NA
1351289	1206564756	PD9774b	14	33931564	A	G	NPAS3	CCDS9645.1	r.?	-	-	intronic	20	0	0	61	9	14.75409836	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.951877314	0.951877314	1	0	1	0	0	2	2.68E-11	1	1	1	NA	NA	NA	NA
1351289	1206565060	PD9774b	14	36834896	A	G	-	-	-	-	-	-	42	0	0	58	8	13.79310345	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.889877642	0.889877642	1	0	1	0	0	2	5.99E-10	1	1	1	NA	NA	NA	NA
1351289	1206565230	PD9774b	14	39102429	A	G	-	-	-	-	-	-	37	0	0	51	5	9.803921569	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.632511069	0.632511069	1	0.00125	0.99875	0	0	2	6.06E-06	1	1	1	NA	NA	NA	NA
1351289	1206565667	PD9774b	14	43951585	T	G	-	-	-	-	-	-	31	0	0	50	11	22	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.419354839	1.419354839	1	0	0.98875	0.01125	0	2	1.52E-15	1	1	1	NA	NA	NA	NA
1351289	1206565695	PD9774b	14	44199148	T	G	-	-	-	-	-	-	28	0	0	52	5	9.615384615	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.620347395	0.620347395	1	0.01125	0.98875	0	0	2	6.68E-06	1	1	1	NA	NA	NA	NA
1351289	1206565812	PD9774b	14	46005607	C	G	-	-	-	-	-	-	32	0	0	49	4	8.163265306	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.526662278	0.526662278	1	0.00625	0.99375	0	0	2	0.000110643	1	1	1	NA	NA	NA	NA
1351289	1206565929	PD9774b	14	47631280	C	G	MDGA2	CCDS41948.1	r.?	-	-	intronic	37	0	0	45	4	8.888888889	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.573476703	0.573476703	1	0.0025	0.99625	0.00125	0	2	7.91E-05	1	1	1	NA	NA	NA	NA
1351289	1206565961	PD9774b	14	47886907	T	G	MDGA2	CCDS45098.1	r.?	-	-	intronic	40	0	0	57	4	7.01754386	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.452744765	0.452744765	1	0.015	0.985	0	0	2	0.000199821	1	1	1	NA	NA	NA	NA
1351289	1206566187	PD9774b	14	50397890	C	G	-	-	-	-	-	-	23	0	0	49	7	14.28571429	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.921658986	0.921658986	1	0.00125	0.9975	0.00125	0	2	5.58E-09	1	1	1	NA	NA	NA	NA
1351289	1206566225	PD9774b	14	50787777	C	G	ATP5S	CCDS32075.1	r.?	-	-	intronic	38	0	0	54	5	9.259259259	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.597371565	0.597371565	1	0.0075	0.9925	0	0	2	8.06E-06	1	1	1	NA	NA	NA	NA
1351289	1206566296	PD9774b	14	51525304	A	G	TRIM9	CCDS9703.1	r.?	-	-	intronic	30	0	0	46	5	10.86956522	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.701262272	0.701262272	1	0.0025	0.9975	0	0	2	3.61E-06	1	1	1	NA	NA	NA	NA
1351289	1206566339	PD9774b	14	51964813	A	G	FRMD6	CCDS9704.1	r.?	-	-	intronic	47	0	0	55	5	9.090909091	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.586510264	0.586510264	1	0.005	0.995	0	0	2	8.83E-06	1	1	1	NA	NA	NA	NA
1351289	1206566505	PD9774b	14	54093766	C	G	-	-	-	-	-	-	37	0	0	34	5	14.70588235	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.948766603	0.948766603	1	0.00125	0.99875	0	0	2	7.71E-07	1	1	1	NA	NA	NA	NA
1351289	1206566649	PD9774b	14	56118546	T	G	KTN1	CCDS9725.1	r.?	-	-	intronic	44	0	0	38	5	13.15789474	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.848896435	0.848896435	1	0	1	0	0	2	1.37E-06	1	1	1	NA	NA	NA	NA
1351289	1206566799	PD9774b	14	58438882	C	G	-	-	-	-	-	-	37	0	0	46	8	17.39130435	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.122019635	1.122019635	1	0	1	0	0	2	8.61E-11	1	1	1	NA	NA	NA	NA
1351289	1206567090	PD9774b	14	62209904	C	G	HIF1A	CCDS9753.1	r.?	-	-	intronic	26	0	0	44	4	9.090909091	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.586510264	0.586510264	1	0.00625	0.99375	0	0	2	7.23E-05	1	1	1	NA	NA	NA	NA
1351289	1206567352	PD9774b	14	65658938	C	G	-	-	-	-	-	-	37	0	0	45	4	8.888888889	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.573476703	0.573476703	1	0.0075	0.9925	0	0	2	7.91E-05	1	1	1	NA	NA	NA	NA
1351289	1206567424	PD9774b	14	66365229	C	G	-	-	-	-	-	-	41	0	0	46	4	8.695652174	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.561009818	0.561009818	1	0.00625	0.99375	0	0	2	8.62E-05	1	1	1	NA	NA	NA	NA
1351289	1206567507	PD9774b	14	68097102	C	G	ARG2	CCDS9785.1	r.?	-	-	intronic	35	0	0	57	8	14.03508772	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.90548953	0.90548953	1	0	0.99875	0.00125	0	2	5.19E-10	1	1	1	NA	NA	NA	NA
1351289	1206567921	PD9774b	14	73594110	A	G	-	-	-	-	-	-	31	0	0	62	7	11.29032258	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.728407908	0.728407908	1	0	1	0	0	2	3.02E-08	1	1	1	NA	NA	NA	NA
1351289	1206567936	PD9774b	14	73783771	C	G	NUMB	CCDS32116.1	r.?	-	-	intronic	38	0	0	50	4	8	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.516129032	0.516129032	1	0.005	0.995	0	0	2	0.000119787	1	1	1	NA	NA	NA	NA
1351289	1206567997	PD9774b	14	74351549	T	G	PTGR2	CCDS9820.1	r.1925u>g	c.?	p.?	3'UTR variant	36	0	0	45	5	11.11111111	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.716845878	0.716845878	1	0.0075	0.9925	0	0	2	3.23E-06	1	1	1	NA	NA	NA	NA
1351289	1206568127	PD9774b	14	75834103	T	G	-	-	-	-	-	-	31	0	0	39	5	12.82051282	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.827129859	0.827129859	1	0.005	0.995	0	0	2	1.56E-06	1	1	1	NA	NA	NA	NA
1351289	1206568201	PD9774b	14	76715271	C	G	-	-	-	-	-	-	33	0	0	48	4	8.333333333	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.537634409	0.537634409	1	0.00375	0.99625	0	0	2	0.000102016	1	1	1	NA	NA	NA	NA
1351289	1206568337	PD9774b	14	78196447	C	G	SNW1	CCDS9867.1	r.?	-	-	intronic	36	0	0	44	6	13.63636364	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.879765396	0.879765396	1	0.0025	0.9975	0	0	2	9.37E-08	1	1	1	NA	NA	NA	NA
1351289	1206568500	PD9774b	14	80851177	A	G	AC010849.1	ENST00000504475	r.?	-	-	intronic	29	0	0	40	4	10	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.64516129	0.64516129	1	0.00625	0.99375	0	0	2	4.95E-05	1	1	1	NA	NA	NA	NA
1351289	1206568591	PD9774b	14	82427115	C	G	-	-	-	-	-	-	37	0	0	53	5	9.433962264	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.608642727	0.608642727	1	0.005	0.995	0	0	2	7.34E-06	1	1	1	NA	NA	NA	NA
1351289	1206568634	PD9774b	14	83123132	T	G	-	-	-	-	-	-	28	0	0	46	4	8.695652174	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.561009818	0.561009818	1	0.005	0.995	0	0	2	8.62E-05	1	1	1	NA	NA	NA	NA
1351289	1206568810	PD9774b	14	85251087	T	G	-	-	-	-	-	-	39	0	0	39	5	12.82051282	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.827129859	0.827129859	1	0.00125	0.99875	0	0	2	1.56E-06	1	1	1	NA	NA	NA	NA
1351289	1206568977	PD9774b	14	87657456	T	G	-	-	-	-	-	-	41	0	0	49	4	8.163265306	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.526662278	0.526662278	1	0.00375	0.99625	0	0	2	0.000110643	1	1	1	NA	NA	NA	NA
1351289	1206569092	PD9774b	14	89536859	A	G	-	-	-	-	-	-	42	0	0	38	6	15.78947368	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.018675722	1.018675722	1	0.00125	0.99875	0	0	2	3.76E-08	1	1	1	NA	NA	NA	NA
1351289	1206569421	PD9774b	14	93356500	T	G	-	-	-	-	-	-	25	0	0	50	4	8	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.516129032	0.516129032	1	0.0125	0.9875	0	0	2	0.000119787	1	1	1	NA	NA	NA	NA
1351289	1206569430	PD9774b	14	93437732	C	G	ITPK1	CCDS9907.1	r.?	-	-	intronic	31	0	0	39	5	12.82051282	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.827129859	0.827129859	1	0	0.9975	0.0025	0	2	1.56E-06	1	1	1	NA	NA	NA	NA
1351289	1206569484	PD9774b	14	94133780	T	G	KIAA1409	CCDS9911.2	r.?	-	-	intronic	34	0	0	59	7	11.86440678	1	0	0	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.765445599	0.765445599	1	0.00125	0.99875	0	0	2	2.12E-08	1	1	1	NA	NA	NA	NA
1351289	1206569523	PD9774b	14	94846181	C	G	SERPINA1	CCDS9925.1	r.?	-	-	intronic	42	0	0	44	7	15.90909091	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.026392962	1.026392962	1	0.00125	0.99875	0	0	2	2.55E-09	1	1	1	NA	NA	NA	NA
1351289	1206569654	PD9774b	14	96423217	C	G	-	-	-	-	-	-	32	0	0	55	6	10.90909091	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.703812317	0.703812317	1	0.00125	0.9975	0.00125	0	2	3.67E-07	1	1	1	NA	NA	NA	NA
1351289	1206569735	PD9774b	14	97570824	A	G	-	-	-	-	-	-	37	0	0	53	5	9.433962264	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.608642727	0.608642727	1	0.005	0.99375	0.00125	0	2	7.34E-06	1	1	1	NA	NA	NA	NA
1351289	1206569736	PD9774b	14	97640237	A	G	-	-	-	-	-	-	26	0	0	43	4	9.302325581	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.600150038	0.600150038	1	0.00875	0.99125	0	0	2	6.60E-05	1	1	1	NA	NA	NA	NA
1351289	1206569895	PD9774b	14	100115863	C	G	HHIPL1	CCDS45162.1	r.?	-	-	intronic	35	0	0	42	4	9.523809524	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.614439324	0.614439324	1	0	1	0	0	2	6.01E-05	1	1	1	NA	NA	NA	NA
1351289	1206570036	PD9774b	14	102043552	C	G	-	-	-	-	-	-	43	0	0	53	6	11.32075472	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.730371272	0.730371272	1	0.0025	0.9975	0	0	2	2.93E-07	1	1	1	NA	NA	NA	NA
1351289	1206570236	PD9774b	14	104353687	C	G	-	-	-	-	-	-	29	0	0	54	6	11.11111111	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.716845878	0.716845878	1	0.005	0.995	0	0	2	3.29E-07	1	1	1	NA	NA	NA	NA
1351289	1206570329	PD9774b	14	105129754	C	G	-	-	-	-	-	-	23	0	0	37	7	18.91891892	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.220575414	1.220575414	1	0	1	0	0	2	7.05E-10	1	1	1	NA	NA	NA	NA
1351289	1206573294	PD9774b	15	23875057	T	G	-	-	-	-	-	-	27	0	0	64	4	6.25	0	0	NA	0	0	NA	1.455522118	1	0	0.544477882	1	1	0.455522118	unphased	0.369195939	0.810489599	0.455522118	0	1	0	0	2	0.000312605	1	1	1	NA	NA	NA	NA
1351289	1206573631	PD9774b	15	26006322	A	G	ATP10A	CCDS32178.1	r.?	-	-	intronic	29	0	0	73	18	24.65753425	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.344233319	1.344233319	1	0	0.995	0.005	0	2	1.62E-25	1	1	1	NA	NA	NA	NA
1351289	1206573683	PD9774b	15	26365261	T	G	-	-	-	-	-	-	33	0	0	49	6	12.24489796	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.667544437	0.667544437	1	0.0075	0.9925	0	0	2	1.82E-07	1	1	1	NA	NA	NA	NA
1351289	1206573697	PD9774b	15	26536406	A	G	-	-	-	-	-	-	35	0	0	61	10	16.39344262	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.893707033	0.893707033	1	0.00125	0.99875	0	0	2	6.98E-13	1	1	1	NA	NA	NA	NA
1351289	1206573712	PD9774b	15	26816417	C	G	GABRB3	CCDS10019.1	r.?	-	-	intronic	39	0	0	71	8	11.26760563	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.614266243	0.614266243	1	0.0075	0.9925	0	0	2	3.14E-09	1	1	1	NA	NA	NA	NA
1351289	1206574193	PD9774b	15	32309856	C	G	-	-	-	-	-	-	40	0	0	60	8	13.33333333	0	0	NA	0	0	NA	0.769405399	0	0	0.230594601	1	0	0.769405399	unphased	0.696135774	0.904771105	0.769405399	0.00125	0.99875	0	0	2	7.93E-10	1	1	1	NA	NA	NA	NA
1351289	1206574480	PD9774b	15	35689092	C	G	ATPBD4	CCDS10043.1	r.?	-	-	intronic	29	0	0	52	12	23.07692308	0	0	NA	0	0	NA	0.769405399	0	0	0.230594601	1	0	0.769405399	unphased	1.204850378	1.204850378	1	0.00125	0.9975	0.00125	0	2	4.19E-17	1	1	1	NA	NA	NA	NA
1351289	1206574564	PD9774b	15	36889387	A	G	C15orf41	CCDS45215.1	r.?	-	-	intronic	45	0	0	49	7	14.28571429	0	0	NA	0	0	NA	0.769405399	0	0	0.230594601	1	0	0.769405399	unphased	0.745859758	0.969397613	0.769405399	0.0025	0.99625	0.00125	0	2	5.58E-09	1	1	1	NA	NA	NA	NA
1351289	1206574573	PD9774b	15	36983301	T	G	C15orf41	CCDS45216.1	r.?	-	-	intronic	34	0	0	56	4	7.142857143	0	0	NA	0	0	NA	0.769405399	0	0	0.230594601	1	0	0.769405399	unphased	0.372929879	0.484698806	0.769405399	0.01	0.99	0	0	2	0.000186538	1	1	1	NA	NA	NA	NA
1351289	1206574611	PD9774b	15	37318974	T	G	MEIS2	CCDS45217.1	r.?	-	-	intronic	35	0	0	46	6	13.04347826	0	0	NA	0	0	NA	0.769405399	0	0	0.230594601	1	0	0.769405399	unphased	0.681002387	0.885102168	0.769405399	0	0.99875	0.00125	0	2	1.23E-07	1	1	1	NA	NA	NA	NA
1351289	1206574779	PD9774b	15	39655547	C	G	-	-	-	-	-	-	31	0	0	36	5	13.88888889	0	0	NA	0	0	NA	0.769405399	0	0	0.230594601	1	0	0.769405399	unphased	0.725141431	0.942469901	0.769405399	0.00125	0.99875	0	0	2	1.04E-06	1	1	1	NA	NA	NA	NA
1351289	1206574978	PD9774b	15	42277288	C	G	PLA2G4E	CCDS45242.1	r.?	-	-	intronic	20	0	0	43	7	16.27906977	0	0	NA	0	0	NA	0.769405399	0	0	0.230594601	1	0	0.769405399	unphased	0.849933212	1.104662396	0.769405399	0.0025	0.9975	0	0	2	2.15E-09	1	1	1	NA	NA	NA	NA
1351289	1206575158	PD9774b	15	45339557	C	G	SORD	CCDS10116.1	r.?	-	-	intronic	39	0	0	48	9	18.75	0	0	NA	0	0	NA	0.769405399	0	0	0.230594601	1	0	0.769405399	unphased	0.978940932	0.978940932	1	0	0.99875	0.00125	0	2	2.75E-12	1	1	1	NA	NA	NA	NA
1351289	1206575447	PD9774b	15	47875403	A	G	-	-	-	-	-	-	28	0	0	49	8	16.32653061	0	0	NA	0	0	NA	0.769405399	0	0	0.230594601	1	0	0.769405399	unphased	0.852411151	1.107882986	0.769405399	0	0.99875	0.00125	0	2	1.47E-10	1	1	1	NA	NA	NA	NA
1351289	1206575843	PD9774b	15	53556657	C	G	-	-	-	-	-	-	44	0	0	45	8	17.77777778	0	0	NA	0	0	NA	0.769405399	0	0	0.230594601	1	0	0.769405399	unphased	0.928181032	0.928181032	1	0.00125	0.99875	0	0	2	7.14E-11	1	1	1	NA	NA	NA	NA
1351289	1206576030	PD9774b	15	56317678	C	G	-	-	-	-	-	-	40	0	0	44	7	15.90909091	0	0	NA	0	0	NA	0.769405399	0	0	0.230594601	1	0	0.769405399	unphased	0.830616548	1.079556433	0.769405399	0	0.9975	0.0025	0	2	2.55E-09	1	1	1	NA	NA	NA	NA
1351289	1206576083	PD9774b	15	57004545	A	G	ZNF280D	CCDS42041.1	r.?	-	-	intronic	31	0	0	45	6	13.33333333	0	0	NA	0	0	NA	0.769405399	0	0	0.230594601	1	0	0.769405399	unphased	0.696135774	0.904771105	0.769405399	0.00125	0.99875	0	0	2	1.08E-07	1	1	1	NA	NA	NA	NA
1351289	1206576202	PD9774b	15	58512264	C	G	-	-	-	-	-	-	39	0	0	67	9	13.43283582	0	0	NA	0	0	NA	0.769405399	0	0	0.230594601	1	0	0.769405399	unphased	0.701330817	0.911523129	0.769405399	0.00125	0.9975	0.00125	0	2	6.43E-11	1	1	1	NA	NA	NA	NA
1351289	1206576459	PD9774b	15	61864023	C	G	-	-	-	-	-	-	19	0	0	33	9	27.27272727	0	0	NA	0	0	NA	0.769405399	0	0	0.230594601	1	0	0.769405399	unphased	1.423914083	1.423914083	1	0	0.99625	0.00375	0	2	6.76E-14	1	1	1	NA	NA	NA	NA
1351289	1206576919	PD9774b	15	67312503	C	G	-	-	-	-	-	-	28	0	0	52	5	9.615384615	0	0	NA	0	0	NA	0.769405399	0	0	0.230594601	1	0	0.769405399	unphased	0.502020991	0.652479163	0.769405399	0.00125	0.99875	0	0	2	6.68E-06	1	1	1	NA	NA	NA	NA
1351289	1206576930	PD9774b	15	67497865	C	G	AAGAB	CCDS42050.1	r.?	-	-	intronic	38	0	0	53	6	11.32075472	0	0	NA	0	0	NA	0.769405399	0	0	0.230594601	1	0	0.769405399	unphased	0.591058676	0.768201882	0.769405399	0.0025	0.9975	0	0	2	2.93E-07	1	1	1	NA	NA	NA	NA
1351289	1206576954	PD9774b	15	67790448	C	G	IQCH	CCDS32273.1	r.?	-	-	intronic	30	0	0	56	5	8.928571429	0	0	NA	0	0	NA	0.769405399	0	0	0.230594601	1	0	0.769405399	unphased	0.466162348	0.605873508	0.769405399	0.0075	0.9925	0	0	2	9.65E-06	1	1	1	NA	NA	NA	NA
1351289	1206577086	PD9774b	15	69456744	C	G	GLCE	CCDS32277.1	r.?	-	-	intronic	34	0	0	49	5	10.20408163	0	0	NA	0	0	NA	0.769405399	0	0	0.230594601	1	0	0.769405399	unphased	0.53275697	0.692426866	0.769405399	0.0075	0.9925	0	0	2	4.96E-06	1	1	1	NA	NA	NA	NA
1351289	1206577088	PD9774b	15	69490547	C	G	GLCE	CCDS32277.1	r.?	-	-	intronic	33	0	0	56	7	12.5	0	0	NA	0	0	NA	0.769405399	0	0	0.230594601	1	0	0.769405399	unphased	0.652627288	0.848222911	0.769405399	0	1	0	0	2	1.46E-08	1	1	1	NA	NA	NA	NA
1351289	1206577393	PD9774b	15	74181909	C	G	TBC1D21	CCDS10252.1	r.?	-	-	downstream	25	0	0	47	6	12.76595745	0	0	NA	0	0	NA	0.769405399	0	0	0.230594601	1	0	0.769405399	unphased	0.666512975	0.866270207	0.769405399	0.00125	0.99875	0	0	2	1.41E-07	1	1	1	NA	NA	NA	NA
1351289	1206577504	PD9774b	15	75391708	T	G	-	-	-	-	-	-	28	0	0	33	5	15.15151515	0	0	NA	0	0	NA	0.769405399	0	0	0.230594601	1	0	0.769405399	unphased	0.791063379	1.028148983	0.769405399	0.00125	0.99625	0.0025	0	2	6.60E-07	1	1	1	NA	NA	NA	NA
1351289	1206578133	PD9774b	15	84087104	A	G	-	-	-	-	-	-	44	0	0	44	10	22.72727273	0	0	NA	0	0	NA	0.769405399	0	0	0.230594601	1	0	0.769405399	unphased	1.186595069	1.186595069	1	0.00125	0.9975	0.00125	0	2	2.08E-14	1	1	1	NA	NA	NA	NA
1351289	1206578359	PD9774b	15	87520707	A	G	-	-	-	-	-	-	36	0	0	43	5	11.62790698	0	0	NA	0	0	NA	0.769405399	0	0	0.230594601	1	0	0.769405399	unphased	0.607095151	0.789044569	0.769405399	0.00375	0.99625	0	0	2	2.57E-06	1	1	1	NA	NA	NA	NA
1351289	1206578411	PD9774b	15	88110824	A	G	-	-	-	-	-	-	44	0	0	49	16	32.65306122	0	0	NA	0	0	NA	0.769405399	0	0	0.230594601	1	0	0.769405399	unphased	1.704822303	1.704822303	1	0	0.95375	0.04625	0	2	4.37E-25	1	1	1	NA	NA	NA	NA
1351289	1206578422	PD9774b	15	88331942	C	G	-	-	-	-	-	-	39	0	0	48	6	12.5	0	0	NA	0	0	NA	0.769405399	0	0	0.230594601	1	0	0.769405399	unphased	0.652627288	0.848222911	0.769405399	0	1	0	0	2	1.60E-07	1	1	1	NA	NA	NA	NA
1351289	1206578460	PD9774b	15	88770241	A	G	NTRK3	CCDS10340.1	r.?	-	-	intronic	32	0	0	51	6	11.76470588	0	0	NA	0	0	NA	0.769405399	0	0	0.230594601	1	0	0.769405399	unphased	0.614237447	0.798327446	0.769405399	0.0025	0.9975	0	0	2	2.32E-07	1	1	1	NA	NA	NA	NA
1351289	1206578684	PD9774b	15	91298654	C	G	BLM	CCDS10363.1	r.?	-	-	intronic	33	0	0	46	5	10.86956522	0	0	NA	1	0	0	0.769405399	0	0	0.230594601	1	0	0.769405399	unphased	0.567501989	0.73758514	0.769405399	0.0075	0.9925	0	0	2	3.61E-06	1	1	1	NA	NA	NA	NA
1351289	1206578761	PD9774b	15	92384359	A	G	-	-	-	-	-	-	37	0	0	50	5	10	0	0	NA	0	0	NA	0.769405399	0	0	0.230594601	1	0	0.769405399	unphased	0.52210183	0.678578329	0.769405399	0.00375	0.99625	0	0	2	5.49E-06	1	1	1	NA	NA	NA	NA
1351289	1206578948	PD9774b	15	94795465	C	G	MCTP2	CCDS32338.1	r.?	-	-	intronic	39	0	0	56	11	19.64285714	0	0	NA	0	0	NA	0.769405399	0	0	0.230594601	1	0	0.769405399	unphased	1.025557167	1.025557167	1	0.00125	0.99625	0.0025	0	2	5.91E-15	1	1	1	NA	NA	NA	NA
1351289	1206579124	PD9774b	15	97179428	C	G	-	-	-	-	-	-	32	0	0	48	4	8.333333333	0	0	NA	0	0	NA	0.769405399	0	0	0.230594601	1	0	0.769405399	unphased	0.435084859	0.565481941	0.769405399	0.0075	0.9925	0	0	2	0.000102016	1	1	1	NA	NA	NA	NA
1351289	1206579271	PD9774b	15	99112192	A	G	-	-	-	-	-	-	40	0	0	57	6	10.52631579	0	0	NA	0	0	NA	0.769405399	0	0	0.230594601	1	0	0.769405399	unphased	0.549580874	0.714292978	0.769405399	0.00375	0.99625	0	0	2	4.56E-07	1	1	1	NA	NA	NA	NA
1351289	1206580244	PD9774b	16	5920643	T	G	-	-	-	-	-	-	24	0	0	71	15	21.12676056	0	0	NA	0	0	NA	1.176144945	1	0	0.823855055	2	0	0.176144945	unphased	1.188962926	1.188962926	1	0	1	0	0	2	2.15E-20	1	1	1	NA	NA	NA	NA
1351289	1206580355	PD9774b	16	7061149	C	G	-	-	-	-	-	-	37	0	0	52	4	7.692307692	0	0	NA	0	0	NA	1.176144945	1	0	0.823855055	2	0	0.176144945	unphased	0.43290445	0.43290445	1	0.015	0.985	0	0	2	0.000139698	1	1	1	NA	NA	NA	NA
1351289	1206580652	PD9774b	16	9801211	A	G	-	-	-	-	-	-	33	0	0	46	7	15.2173913	0	0	NA	0	0	NA	1.176144945	1	0	0.823855055	2	0	0.176144945	unphased	0.856397933	0.856397933	1	0	1	0	0	2	3.53E-09	1	1	1	NA	NA	NA	NA
1351289	1206580664	PD9774b	16	10056205	T	G	GRIN2A	CCDS10539.1	r.?	-	-	intronic	21	0	0	28	5	17.85714286	0	0	NA	0	0	NA	1.176144945	1	0	0.823855055	2	0	0.176144945	unphased	1.004956759	1.004956759	1	0.005	0.99375	0.00125	0	2	2.79E-07	1	1	1	NA	NA	NA	NA
1351289	1206580971	PD9774b	16	13396890	T	G	-	-	-	-	-	-	34	0	0	67	14	20.89552239	0	0	NA	0	0	NA	0.807308851	0	0	0.192691149	1	0	0.807308851	unphased	1.098879172	1.098879172	1	0	0.99625	0.00375	0	2	4.66E-19	1	1	1	NA	NA	NA	NA
1351289	1206581432	PD9774b	16	18494977	C	G	-	-	-	-	-	-	11	0	0	6	3	50	0	0	NA	0	0	NA	0.807308851	0	0	0.192691149	1	0	0.807308851	unphased	2.629460877	2.629460877	1	0	0.9925	0.0075	0	2	2.47E-06	1	1	1	NA	NA	NA	NA
1351289	1206582070	PD9774b	16	24760192	C	G	TNRC6A	CCDS10624.2	r.?	-	-	intronic	25	0	0	46	6	13.04347826	0	0	NA	0	0	NA	0.807308851	0	0	0.192691149	1	0	0.807308851	unphased	0.685946316	0.849670253	0.807308851	0.00125	0.99875	0	0	2	1.23E-07	1	1	1	NA	NA	NA	NA
1351289	1206582208	PD9774b	16	26512220	T	G	-	-	-	-	-	-	49	0	0	52	4	7.692307692	0	0	NA	0	0	NA	0.807308851	0	0	0.192691149	1	0	0.807308851	unphased	0.404532443	0.501087585	0.807308851	0.01	0.99	0	0	2	0.000139698	1	1	1	NA	NA	NA	NA
1351289	1206582333	PD9774b	16	28061187	C	G	GSG1L	CCDS45450.1	r.?	-	-	intronic	35	0	0	47	7	14.89361702	0	0	NA	0	0	NA	1.570280508	1	0	0.429719492	1	1	0.570280508	unphased	0.896877742	0.896877742	1	0.00125	0.99875	0	0	2	4.12E-09	1	1	1	NA	NA	NA	NA
1351289	1206583820	PD9774b	16	32450451	T	G	-	-	-	-	-	-	22	0	0	35	8	22.85714286	0	0	NA	0	0	NA	1.570280508	1	0	0.429719492	1	1	0.570280508	unphased	1.37643278	1.37643278	1	0	0.99375	0.00625	0	2	8.15E-12	1	1	1	NA	NA	NA	NA
1351289	1206591908	PD9774b	16	57974987	A	G	CNGB1	CCDS42169.1	r.?	-	-	intronic	24	0	0	47	6	12.76595745	0	0	NA	0	0	NA	1.570280508	1	0	0.429719492	1	1	0.570280508	unphased	0.76875235	0.76875235	1	0.00125	0.99875	0	0	2	1.41E-07	1	1	1	NA	NA	NA	NA
1351289	1206592030	PD9774b	16	59209612	C	G	-	-	-	-	-	-	39	0	0	62	4	6.451612903	0	0	NA	0	0	NA	1.570280508	1	0	0.429719492	1	1	0.570280508	unphased	0.388509252	0.681259919	0.570280508	0.00375	0.99625	0	0	2	0.000276647	1	1	1	NA	NA	NA	NA
1351289	1206592165	PD9774b	16	60949325	A	G	-	-	-	-	-	-	33	0	0	46	5	10.86956522	0	0	NA	0	0	NA	1.570280508	1	0	0.429719492	1	1	0.570280508	unphased	0.654553632	1.147774863	0.570280508	0	0.99375	0.00625	0	2	3.61E-06	1	1	1	NA	NA	NA	NA
1351289	1206592182	PD9774b	16	61478479	C	G	-	-	-	-	-	-	32	0	0	49	5	10.20408163	0	0	NA	0	0	NA	1.570280508	1	0	0.429719492	1	1	0.570280508	unphased	0.614478919	1.077502933	0.570280508	0	0.9975	0.0025	0	2	4.96E-06	1	1	1	NA	NA	NA	NA
1351289	1206592472	PD9774b	16	65538573	C	G	AC009055.1	ENST00000505989	r.?	-	-	intronic	39	0	0	56	4	7.142857143	1	0	0	0	0	NA	1.570280508	1	0	0.429719492	1	1	0.570280508	unphased	0.430135244	0.754252053	0.570280508	0.0025	0.99625	0.00125	0	2	0.000186538	1	1	1	NA	NA	NA	NA
1351289	1206592659	PD9774b	16	68295873	C	G	SLC7A6	CCDS32470.1	r.?	-	-	upstream	35	0	0	54	4	7.407407407	0	0	NA	0	0	NA	1.570280508	1	0	0.429719492	1	1	0.570280508	unphased	0.446066179	0.782187314	0.570280508	0.0025	0.99625	0.00125	0	2	0.000161898	1	1	1	NA	NA	NA	NA
1351289	1206592805	PD9774b	16	69497854	C	G	CYB5B	CCDS10880.2	r.2043c>g	c.?	p.?	3'UTR variant	39	0	0	50	4	8	0	0	NA	0	0	NA	1.570280508	1	0	0.429719492	1	1	0.570280508	unphased	0.481751473	0.844762299	0.570280508	0.00375	0.99625	0	0	2	0.000119787	1	1	1	NA	NA	NA	NA
1351289	1206592955	PD9774b	16	70483060	T	G	-	-	-	-	-	-	29	0	0	40	8	20	0	0	NA	0	0	NA	1.570280508	1	0	0.429719492	1	1	0.570280508	unphased	1.204378682	1.204378682	1	0	0.9975	0.0025	0	2	2.61E-11	1	1	1	NA	NA	NA	NA
1351289	1206592966	PD9774b	16	70626013	C	G	-	-	-	-	-	-	38	0	0	30	4	13.33333333	0	0	NA	0	0	NA	1.570280508	1	0	0.429719492	1	1	0.570280508	unphased	0.802919121	0.802919121	1	0.0025	0.9975	0	0	2	1.54E-05	1	1	1	NA	NA	NA	NA
1351289	1206593153	PD9774b	16	71956712	C	G	KIAA0174	CCDS10905.1	r.?	-	-	intronic	30	0	0	43	6	13.95348837	0	0	NA	0	0	NA	1.570280508	1	0	0.429719492	1	1	0.570280508	unphased	0.840264197	0.840264197	1	0.0025	0.995	0.0025	0	2	8.13E-08	1	1	1	NA	NA	NA	NA
1351289	1206593382	PD9774b	16	74565752	T	G	GLG1	CCDS45527.1	r.?	-	-	intronic	38	0	0	43	10	23.25581395	0	0	NA	0	0	NA	1.570280508	1	0	0.429719492	1	1	0.570280508	unphased	1.400440328	1.400440328	1	0.0025	0.99375	0.00375	0	2	1.61E-14	1	1	1	NA	NA	NA	NA
1351289	1206593503	PD9774b	16	75810425	A	G	-	-	-	-	-	-	29	0	0	51	4	7.843137255	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.506008855	0.506008855	1	0.0075	0.9925	0	0	2	0.000129466	1	1	1	NA	NA	NA	NA
1351289	1206593562	PD9774b	16	76506321	A	G	CNTNAP4	ENST00000307431	r.?	-	-	intronic	30	0	0	60	7	11.66666667	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.752688172	0.752688172	1	0.0025	0.9975	0	0	2	2.39E-08	1	1	1	NA	NA	NA	NA
1351289	1206593612	PD9774b	16	77212947	C	G	-	-	-	-	-	-	37	0	0	54	12	22.22222222	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.433691756	1.433691756	1	0	0.99	0.01	0	2	6.90E-17	1	1	1	NA	NA	NA	NA
1351289	1206594560	PD9774b	16	86398126	A	G	-	-	-	-	-	-	38	0	0	52	7	13.46153846	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.868486352	0.868486352	1	0.00125	0.9975	0.00125	0	2	8.58E-09	1	1	1	NA	NA	NA	NA
1351289	1206594605	PD9774b	16	86845131	C	G	-	-	-	-	-	-	25	0	0	52	6	11.53846154	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.744416873	0.744416873	1	0	0.99875	0.00125	0	2	2.61E-07	1	1	1	NA	NA	NA	NA
1351289	1206594657	PD9774b	16	87201822	C	G	-	-	-	-	-	-	47	0	0	46	5	10.86956522	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.701262272	0.701262272	1	0.00125	0.99875	0	0	2	3.61E-06	1	1	1	NA	NA	NA	NA
1351289	1206595547	PD9774b	17	2668134	C	G	-	-	-	-	-	-	28	0	0	41	6	14.63414634	0	0	NA	0	0	NA	0.78531958	0	0	0.21468042	1	0	0.78531958	unphased	0.766380363	0.975883428	0.78531958	0	0.99875	0.00125	0	2	6.05E-08	1	1	1	NA	NA	NA	NA
1351289	1206595578	PD9774b	17	3012814	C	G	-	-	-	-	-	-	40	0	0	60	8	13.33333333	0	0	NA	0	0	NA	0.78531958	0	0	0.21468042	1	0	0.78531958	unphased	0.698257664	0.889138234	0.78531958	0.0025	0.9975	0	0	2	7.93E-10	1	1	1	NA	NA	NA	NA
1351289	1206595761	PD9774b	17	4834167	A	G	GP1BA	ENST00000438881	r.?	-	-	upstream	26	0	0	38	7	18.42105263	0	0	NA	0	0	NA	0.78531958	0	0	0.21468042	1	0	0.78531958	unphased	0.964698089	0.964698089	1	0	1	0	0	2	8.61E-10	1	1	1	NA	NA	NA	NA
1351289	1206596285	PD9774b	17	10830505	C	G	-	-	-	-	-	-	36	0	0	51	8	15.68627451	0	0	NA	0	0	NA	0.78531958	0	0	0.21468042	1	0	0.78531958	unphased	0.821479605	1.046044981	0.78531958	0.0025	0.99375	0.00375	0	2	2.05E-10	1	1	1	NA	NA	NA	NA
1351289	1206596421	PD9774b	17	12406347	C	G	-	-	-	-	-	-	34	0	0	44	9	20.45454545	0	0	NA	0	0	NA	0.78531958	0	0	0.21468042	1	0	0.78531958	unphased	1.071190735	1.071190735	1	0	0.99625	0.00375	0	2	1.18E-12	1	1	1	NA	NA	NA	NA
1351289	1206596593	PD9774b	17	14323610	T	G	-	-	-	-	-	-	32	0	0	58	9	15.51724138	0	0	NA	0	0	NA	0.78531958	0	0	0.21468042	1	0	0.78531958	unphased	0.812627454	1.034772945	0.78531958	0.00375	0.99625	0	0	2	1.67E-11	1	1	1	NA	NA	NA	NA
1351289	1206596606	PD9774b	17	14570748	C	G	-	-	-	-	-	-	36	0	0	48	4	8.333333333	0	0	NA	0	0	NA	0.78531958	0	0	0.21468042	1	0	0.78531958	unphased	0.43641104	0.555711396	0.78531958	0.0025	0.9975	0	0	2	0.000102016	1	1	1	NA	NA	NA	NA
1351289	1206596617	PD9774b	17	14639392	T	G	-	-	-	-	-	-	21	0	0	42	3	7.142857143	0	0	NA	0	0	NA	0.78531958	0	0	0.21468042	1	0	0.78531958	unphased	0.374066606	0.476324054	0.78531958	0.0075	0.9925	0	0	2	0.001240292	1	1	1	NA	NA	NA	NA
1351289	1206597275	PD9774b	17	20760424	T	G	-	-	-	-	-	-	31	0	0	34	5	14.70588235	0	0	NA	0	0	NA	0.78531958	0	0	0.21468042	1	0	0.78531958	unphased	0.77013713	0.98066717	0.78531958	0.0025	0.9975	0	0	2	7.71E-07	1	1	1	NA	NA	NA	NA
1351289	1206600371	PD9774b	17	27862995	C	G	TAOK1	CCDS32601.1	r.?	-	-	intronic	36	0	0	61	6	9.836065574	199	0	0	110	11	10	1.337843266	1	0	0.662156734	2	0	0.337843266	unphased	0.569454705	0.569454705	1	0.00875	0.99	0.00125	0	2	6.85E-07	1	1.32E-11	1	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206600456	PD9774b	17	28880644	T	G	-	-	-	-	-	-	23	0	0	39	7	17.94871795	0	0	NA	0	0	NA	1.337843266	1	0	0.662156734	2	0	0.337843266	unphased	1.039133159	1.039133159	1	0	0.99875	0.00125	0	2	1.04E-09	1	1	1	NA	NA	NA	NA
1351289	1206600644	PD9774b	17	30687251	C	G	ZNF207	CCDS42294.1	r.?	-	-	intronic	27	0	0	40	3	7.5	0	0	NA	0	0	NA	1.337843266	1	0	0.662156734	2	0	0.337843266	unphased	0.434209213	1.285238619	0.337843266	0	0.995	0.005	0	2	0.001075403	1	1	1	NA	NA	NA	NA
1351289	1206600652	PD9774b	17	30714769	C	G	-	-	-	-	-	-	31	0	0	47	4	8.510638298	0	0	NA	0	0	NA	1.337843266	1	0	0.662156734	2	0	0.337843266	unphased	0.492719674	1.458426802	0.337843266	0	0.9975	0.0025	0	2	9.39E-05	1	1	1	NA	NA	NA	NA
1351289	1206600944	PD9774b	17	34277425	A	G	-	-	-	-	-	-	32	0	0	39	4	10.25641026	0	0	NA	0	0	NA	1.337843266	1	0	0.662156734	2	0	0.337843266	unphased	0.593790376	0.593790376	1	0.0025	0.9975	0	0	2	4.47E-05	1	1	1	NA	NA	NA	NA
1351289	1206601462	PD9774b	17	39374381	C	G	KRTAP9-2	ENST00000411528	r.?	-	-	intronic	28	0	0	42	6	14.28571429	0	0	NA	0	0	NA	1.337843266	1	0	0.662156734	2	0	0.337843266	unphased	0.827065167	0.827065167	1	0.00125	0.99875	0	0	2	7.02E-08	1	1	1	NA	NA	NA	NA
1351289	1206601569	PD9774b	17	40713781	C	G	COASY	CCDS11429.1	r.?	-	-	upstream	37	0	0	47	5	10.63829787	0	0	NA	0	0	NA	1.337843266	1	0	0.662156734	2	0	0.337843266	unphased	0.615899592	0.615899592	1	0.00375	0.99625	0	0	2	4.02E-06	1	1	1	NA	NA	NA	NA
1351289	1206601685	PD9774b	17	41920125	C	G	CD300LG	CCDS11470.1	r.?	-	-	upstream	20	0	0	47	5	10.63829787	0	0	NA	0	0	NA	1.337843266	1	0	0.662156734	2	0	0.337843266	unphased	0.615899592	0.615899592	1	0.005	0.995	0	0	2	4.02E-06	1	1	1	NA	NA	NA	NA
1351289	1206601748	PD9774b	17	42583267	A	G	GPATCH8	CCDS32666.1	r.?	-	-	upstream	43	0	0	45	4	8.888888889	0	0	NA	0	0	NA	1.337843266	1	0	0.662156734	2	0	0.337843266	unphased	0.514618326	0.514618326	1	0.0025	0.9975	0	0	2	7.91E-05	1	1	1	NA	NA	NA	NA
1351289	1206601751	PD9774b	17	42595367	C	G	-	-	-	-	-	-	33	0	0	50	7	14	0	0	NA	0	0	NA	1.337843266	1	0	0.662156734	2	0	0.337843266	unphased	0.810523864	0.810523864	1	0.00125	0.99875	0	0	2	6.46E-09	1	1	1	NA	NA	NA	NA
1351289	1206602095	PD9774b	17	44568652	C	G	C17orf88	ENST00000434563	r.?	-	-	intronic	68	0	0	80	8	10	0	0	NA	0	0	NA	1.359934568	1	0	0.640065432	2	0	0.359934568	unphased	0.581154747	0.581154747	1	0.01375	0.98625	0	0	2	8.22E-09	1	1	1	NA	NA	NA	NA
1351289	1206602455	PD9774b	17	47831335	A	G	FAM117A	CCDS11553.1	r.?	-	-	intronic	28	0	0	47	11	23.40425532	0	0	NA	0	0	NA	1.359934568	1	0	0.640065432	2	0	0.359934568	unphased	1.360149408	1.360149408	1	0	0.99625	0.00375	0	2	7.21E-16	1	1	1	NA	NA	NA	NA
1351289	1206602519	PD9774b	17	48398407	C	G	-	-	-	-	-	-	25	0	0	44	14	31.81818182	0	0	NA	0	0	NA	1.359934568	1	0	0.640065432	2	0	0.359934568	unphased	1.849128741	1.359718904	1.359934568	0	0.9975	0.0025	0	2	6.10E-22	1	1	1	NA	NA	NA	NA
1351289	1206602763	PD9774b	17	51503024	T	G	-	-	-	-	-	-	26	0	0	39	8	20.51282051	168	0	0	216	34	15.74074074	1.359934568	1	0	0.640065432	2	0	0.359934568	unphased	1.192112302	1.192112302	1	0	1	0	0	2	2.09E-11	1	1.23E-39	1	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206602820	PD9774b	17	52356471	T	G	-	-	-	-	-	-	32	0	0	41	13	31.70731707	0	0	NA	0	0	NA	1.359934568	1	0	0.640065432	2	0	0.359934568	unphased	1.842685784	1.354981208	1.359934568	0	0.99625	0.00375	0	2	1.89E-20	1	1	1	NA	NA	NA	NA
1351289	1206602823	PD9774b	17	52404031	C	G	-	-	-	-	-	-	33	0	0	40	6	15	0	0	NA	0	0	NA	1.359934568	1	0	0.640065432	2	0	0.359934568	unphased	0.871732121	0.871732121	1	0.0025	0.99625	0.00125	0	2	5.18E-08	1	1	1	NA	NA	NA	NA
1351289	1206602939	PD9774b	17	53803284	C	G	TMEM100	CCDS11587.1	r.?	-	-	intronic	28	0	0	42	11	26.19047619	0	0	NA	0	0	NA	1.359934568	1	0	0.640065432	2	0	0.359934568	unphased	1.522071957	1.522071957	1	0	0.99	0.01	0	2	1.81E-16	1	1	1	NA	NA	NA	NA
1351289	1206603347	PD9774b	17	59026617	T	G	BCAS3	CCDS45749.1	r.?	-	-	intronic	33	0	0	54	7	12.96296296	0	0	NA	0	0	NA	1.359934568	1	0	0.640065432	2	0	0.359934568	unphased	0.753348746	0.753348746	1	0.00375	0.99625	0	0	2	1.13E-08	1	1	1	NA	NA	NA	NA
1351289	1206603589	PD9774b	17	61304127	C	G	TANC2	CCDS45754.1	r.?	-	-	intronic	28	0	0	52	7	13.46153846	0	0	NA	0	0	NA	2	2	0	1	NA	NA	NA	unphased	0.868486352	0.868486352	1	0	1	0	0	2	8.58E-09	1	1	1	NA	NA	NA	NA
1351289	1206603648	PD9774b	17	61967717	C	G	CSH1	CCDS11651.1	r.?	-	-	downstream	22	0	0	63	4	6.349206349	0	0	NA	0	0	NA	2	2	0	1	NA	NA	NA	unphased	0.409626216	0.409626216	1	0.0125	0.9875	0	0	2	0.000294233	1	1	1	NA	NA	NA	NA
1351289	1206603769	PD9774b	17	62982597	C	G	-	-	-	-	-	-	37	0	0	54	5	9.259259259	0	0	NA	0	0	NA	2	2	0	1	NA	NA	NA	unphased	0.597371565	0.597371565	1	0.00875	0.99125	0	0	2	8.06E-06	1	1	1	NA	NA	NA	NA
1351289	1206603864	PD9774b	17	63896433	C	G	CCDC46	CCDS32710.1	r.?	-	-	intronic	41	0	0	68	6	8.823529412	0	0	NA	0	0	NA	2	2	0	1	NA	NA	NA	unphased	0.569259962	0.569259962	1	0.0075	0.9925	0	0	2	1.31E-06	1	1	1	NA	NA	NA	NA
1351289	1206603865	PD9774b	17	63899471	A	G	CCDC46	CCDS32710.1	r.?	-	-	intronic	42	0	0	53	18	33.96226415	0	0	NA	0	0	NA	2	2	0	1	NA	NA	NA	unphased	2.191113816	1.095556908	2	0	1	0	0	2	2.09E-28	1	1	1	NA	NA	NA	NA
1351289	1206604052	PD9774b	17	65419436	A	G	PITPNC1	ENST00000423236	r.?	-	-	intronic	36	0	0	58	7	12.06896552	0	0	NA	0	0	NA	2	2	0	1	NA	NA	NA	unphased	0.778642937	0.778642937	1	0.00375	0.99625	0	0	2	1.88E-08	1	1	1	NA	NA	NA	NA
1351289	1206604110	PD9774b	17	65787617	A	G	-	-	-	-	-	-	26	0	0	37	12	32.43243243	0	0	NA	0	0	NA	2	2	0	1	NA	NA	NA	unphased	2.092414996	1.046207498	2	0	1	0	0	2	4.03E-19	1	1	1	NA	NA	NA	NA
1351289	1206604170	PD9774b	17	66410162	C	G	ARSG	CCDS11676.1	r.?	-	-	intronic	40	0	0	48	10	20.83333333	0	0	NA	0	0	NA	2	2	0	1	NA	NA	NA	unphased	1.344086022	1.344086022	1	0.00125	0.9975	0.00125	0	2	5.37E-14	1	1	1	NA	NA	NA	NA
1351289	1206604184	PD9774b	17	66517258	T	G	PRKAR1A	CCDS11678.1	r.?	-	-	intronic	19	0	0	56	5	8.928571429	0	0	NA	0	0	NA	2	2	0	1	NA	NA	NA	unphased	0.576036866	0.576036866	1	0.00375	0.99625	0	0	2	9.65E-06	1	1	1	NA	NA	NA	NA
1351289	1206604747	PD9774b	17	71686325	T	G	-	-	-	-	-	-	35	0	0	79	6	7.594936709	0	0	NA	0	0	NA	2	2	0	1	NA	NA	NA	unphased	0.489995917	0.489995917	1	0.01125	0.98875	0	0	2	3.18E-06	1	1	1	NA	NA	NA	NA
1351289	1206604800	PD9774b	17	72144596	C	G	-	-	-	-	-	-	26	0	0	38	14	36.84210526	0	0	NA	0	0	NA	2	2	0	1	NA	NA	NA	unphased	2.376910017	1.188455008	2	0	1	0	0	2	5.28E-23	1	1	1	NA	NA	NA	NA
1351289	1206605476	PD9774b	17	78218809	C	G	SLC26A11	CCDS11771.2	r.?	-	-	intronic	18	0	0	39	4	10.25641026	0	0	NA	0	0	NA	2	2	0	1	NA	NA	NA	unphased	0.661703888	0.661703888	1	0.00625	0.99375	0	0	2	4.47E-05	1	1	1	NA	NA	NA	NA
1351289	1206606195	PD9774b	18	2416088	C	G	-	-	-	-	-	-	33	0	0	51	8	15.68627451	0	0	NA	0	0	NA	1.612613399	1	0	0.387386601	1	1	0.612613399	unphased	0.951251185	0.951251185	1	0.0025	0.9975	0	0	2	2.05E-10	1	1	1	NA	NA	NA	NA
1351289	1206606327	PD9774b	18	4046625	C	G	-	-	-	-	-	-	38	0	0	70	5	7.142857143	0	0	NA	0	0	NA	1.612613399	1	0	0.387386601	1	1	0.612613399	unphased	0.433159022	0.707067495	0.612613399	0.00375	0.99625	0	0	2	2.89E-05	1	1	1	NA	NA	NA	NA
1351289	1206606330	PD9774b	18	4073247	A	G	-	-	-	-	-	-	39	0	0	47	7	14.89361702	0	0	NA	0	0	NA	1.612613399	1	0	0.387386601	1	1	0.612613399	unphased	0.903182641	0.903182641	1	0.00125	0.99875	0	0	2	4.12E-09	1	1	1	NA	NA	NA	NA
1351289	1206606452	PD9774b	18	5496481	C	G	EPB41L3	CCDS11838.1	r.?	-	-	intronic	34	0	0	65	10	15.38461538	0	0	NA	0	0	NA	1.612613399	1	0	0.387386601	1	1	0.612613399	unphased	0.932957893	0.932957893	1	0	1	0	0	2	1.36E-12	1	1	1	NA	NA	NA	NA
1351289	1206606597	PD9774b	18	7293770	C	G	-	-	-	-	-	-	29	0	0	40	7	17.5	0	0	NA	0	0	NA	1.612613399	1	0	0.387386601	1	1	0.612613399	unphased	1.061239603	1.061239603	1	0	1	0	0	2	1.26E-09	1	1	1	NA	NA	NA	NA
1351289	1206606627	PD9774b	18	7829451	A	G	PTPRM	CCDS11840.1	r.?	-	-	intronic	45	0	0	63	6	9.523809524	0	0	NA	0	0	NA	1.612613399	1	0	0.387386601	1	1	0.612613399	unphased	0.577545362	0.94275666	0.612613399	0	1	0	0	2	8.32E-07	1	1	1	NA	NA	NA	NA
1351289	1206606658	PD9774b	18	8064966	A	G	PTPRM	CCDS11840.1	r.?	-	-	intronic	35	0	0	48	6	12.5	0	0	NA	0	0	NA	1.612613399	1	0	0.387386601	1	1	0.612613399	unphased	0.758028288	1.237368116	0.612613399	0.00125	0.995	0.00375	0	2	1.60E-07	1	1	1	NA	NA	NA	NA
1351289	1206606788	PD9774b	18	9839944	A	G	RAB31	CCDS45826.1	r.?	-	-	intronic	32	0	0	53	10	18.86792453	0	0	NA	0	0	NA	1.612613399	1	0	0.387386601	1	1	0.612613399	unphased	1.144193642	1.144193642	1	0	1	0	0	2	1.57E-13	1	1	1	NA	NA	NA	NA
1351289	1206606825	PD9774b	18	10315833	T	G	-	-	-	-	-	-	33	0	0	54	5	9.259259259	0	0	NA	0	0	NA	1.612613399	1	0	0.387386601	1	1	0.612613399	unphased	0.561502435	0.916568975	0.612613399	0.0025	0.99625	0.00125	0	2	8.06E-06	1	1	1	NA	NA	NA	NA
1351289	1206606832	PD9774b	18	10470344	C	G	APCDD1	CCDS11849.1	r.?	-	-	intronic	42	0	0	57	7	12.28070175	0	0	NA	0	0	NA	1.612613399	1	0	0.387386601	1	1	0.612613399	unphased	0.744729546	1.215659903	0.612613399	0	0.99625	0.00375	0	2	1.66E-08	1	1	1	NA	NA	NA	NA
1351289	1206607191	PD9774b	18	14093350	T	G	-	-	-	-	-	-	40	0	0	49	8	16.32653061	0	0	NA	0	0	NA	1.612613399	1	0	0.387386601	1	1	0.612613399	unphased	0.990077764	0.990077764	1	0	0.99875	0.00125	0	2	1.47E-10	1	1	1	NA	NA	NA	NA
1351289	1206609265	PD9774b	18	21104253	C	G	C18orf8	CCDS32803.1	r.?	-	-	intronic	39	0	0	57	6	10.52631579	0	0	NA	0	0	NA	0.766536695	0	0	0.233463305	1	0	0.766536695	unphased	0.549278905	0.716572225	0.766536695	0.00625	0.99375	0	0	2	4.56E-07	1	1	1	NA	NA	NA	NA
1351289	1206609572	PD9774b	18	25021217	C	G	-	-	-	-	-	-	35	0	0	55	6	10.90909091	0	0	NA	0	0	NA	0.766536695	0	0	0.233463305	1	0	0.766536695	unphased	0.569252683	0.742629397	0.766536695	0.0025	0.9975	0	0	2	3.67E-07	1	1	1	NA	NA	NA	NA
1351289	1206609577	PD9774b	18	25050066	A	G	-	-	-	-	-	-	45	0	0	49	7	14.28571429	0	0	NA	0	0	NA	0.766536695	0	0	0.233463305	1	0	0.766536695	unphased	0.745449943	0.972490877	0.766536695	0.00125	0.99875	0	0	2	5.58E-09	1	1	1	NA	NA	NA	NA
1351289	1206609702	PD9774b	18	26772850	C	G	-	-	-	-	-	-	29	0	0	37	7	18.91891892	0	0	NA	0	0	NA	0.766536695	0	0	0.233463305	1	0	0.766536695	unphased	0.987217492	0.987217492	1	0	1	0	0	2	7.05E-10	1	1	1	NA	NA	NA	NA
1351289	1206610048	PD9774b	18	31933855	C	G	-	-	-	-	-	-	39	0	0	68	6	8.823529412	0	0	NA	0	0	NA	1.731976103	1	0	0.268023897	1	1	0.731976103	unphased	0.545610795	0.745394272	0.731976103	0.005	0.995	0	0	2	1.31E-06	1	1	1	NA	NA	NA	NA
1351289	1206610143	PD9774b	18	33164714	A	G	GALNT1	ENST00000392829	r.?	-	-	intronic	43	0	0	43	4	9.302325581	0	0	NA	0	0	NA	1.731976103	1	0	0.268023897	1	1	0.731976103	unphased	0.575217582	0.785842023	0.731976103	0.00125	0.99875	0	0	2	6.60E-05	1	1	1	NA	NA	NA	NA
1351289	1206610517	PD9774b	18	38279428	A	G	-	-	-	-	-	-	36	0	0	58	11	18.96551724	0	0	NA	0	0	NA	1.731976103	1	0	0.268023897	1	1	0.731976103	unphased	1.172749639	1.172749639	1	0	0.9975	0.0025	0	2	8.96E-15	1	1	1	NA	NA	NA	NA
1351289	1206610529	PD9774b	18	38343860	A	G	-	-	-	-	-	-	51	0	0	58	12	20.68965517	133	0	0	168	15	8.928571429	1.731976103	1	0	0.268023897	1	1	0.731976103	unphased	1.279363243	1.279363243	1	0	0.99875	0.00125	0	2	1.76E-16	1	1.43E-14	1	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206610612	PD9774b	18	39335207	T	G	-	-	-	-	-	-	30	0	0	50	4	8	0	0	NA	0	0	NA	1.731976103	1	0	0.268023897	1	1	0.731976103	unphased	0.494687121	0.67582414	0.731976103	0.00125	0.9975	0.00125	0	2	0.000119787	1	1	1	NA	NA	NA	NA
1351289	1206610691	PD9774b	18	40432401	T	G	RIT2	CCDS11921.1	r.?	-	-	intronic	26	0	0	45	13	28.88888889	0	0	NA	0	0	NA	1.731976103	1	0	0.268023897	1	1	0.731976103	unphased	1.786370157	1.786370157	1	0	0.965	0.03375	0.00125	2	7.68E-20	1	1	1	NA	NA	NA	NA
1351289	1206610708	PD9774b	18	40788580	C	G	-	-	-	-	-	-	35	0	0	51	6	11.76470588	0	0	NA	0	0	NA	1.731976103	1	0	0.268023897	1	1	0.731976103	unphased	0.72748106	0.993859029	0.731976103	0.0025	0.9975	0	0	2	2.32E-07	1	1	1	NA	NA	NA	NA
1351289	1206610869	PD9774b	18	43250724	C	G	SLC14A2	CCDS11924.1	r.?	-	-	intronic	41	0	0	46	5	10.86956522	0	0	NA	0	0	NA	1.731976103	1	0	0.268023897	1	1	0.731976103	unphased	0.67212924	0.918239321	0.731976103	0.00375	0.99625	0	0	2	3.61E-06	1	1	1	NA	NA	NA	NA
1351289	1206611334	PD9774b	18	49084245	C	G	ENSG00000227115	ENST00000435144	r.?	-	-	intronic	27	0	0	60	12	20	0	0	NA	0	0	NA	1.731976103	1	0	0.268023897	1	1	0.731976103	unphased	1.236717801	1.236717801	1	0	0.9975	0.0025	0	2	2.74E-16	1	1	1	NA	NA	NA	NA
1351289	1206611485	PD9774b	18	51049965	C	G	DCC	CCDS11952.1	r.?	-	-	intronic	29	0	0	52	12	23.07692308	0	0	NA	0	0	NA	1.731976103	1	0	0.268023897	1	1	0.731976103	unphased	1.426982078	1.426982078	1	0	0.99375	0.00625	0	2	4.19E-17	1	1	1	NA	NA	NA	NA
1351289	1206611620	PD9774b	18	52899978	C	G	TCF4	CCDS42438.1	r.?	-	-	intronic	29	0	0	49	6	12.24489796	0	0	NA	0	0	NA	1.731976103	1	0	0.268023897	1	1	0.731976103	unphased	0.757174164	1.034424704	0.731976103	0.0025	0.99625	0.00125	0	2	1.82E-07	1	1	1	NA	NA	NA	NA
1351289	1206611670	PD9774b	18	53754216	C	G	ENSG00000206129	ENST00000382897	r.?	-	-	intronic	23	0	0	51	9	17.64705882	0	0	NA	0	0	NA	1.731976103	1	0	0.268023897	1	1	0.731976103	unphased	1.091221589	1.091221589	1	0	1	0	0	2	4.92E-12	1	1	1	NA	NA	NA	NA
1351289	1206611737	PD9774b	18	54481529	T	G	WDR7	CCDS11962.1	r.?	-	-	intronic	45	0	0	53	8	15.09433962	0	0	NA	0	0	NA	1.731976103	1	0	0.268023897	1	1	0.731976103	unphased	0.933371926	0.933371926	1	0.0025	0.9975	0	0	2	2.83E-10	1	1	1	NA	NA	NA	NA
1351289	1206611895	PD9774b	18	56265517	C	G	ALPK2	CCDS11966.2	r.?	-	-	intronic	27	0	0	50	5	10	0	0	NA	0	0	NA	1.731976103	1	0	0.268023897	1	1	0.731976103	unphased	0.618358901	0.844780175	0.731976103	0.0025	0.9975	0	0	2	5.49E-06	1	1	1	NA	NA	NA	NA
1351289	1206611973	PD9774b	18	57314442	A	G	CCBE1	CCDS32838.1	r.?	-	-	intronic	28	0	0	48	8	16.66666667	0	0	NA	0	0	NA	1.731976103	1	0	0.268023897	1	1	0.731976103	unphased	1.030598168	1.030598168	1	0	1	0	0	2	1.23E-10	1	1	1	NA	NA	NA	NA
1351289	1206612160	PD9774b	18	59984371	C	G	-	-	-	-	-	-	37	0	0	50	4	8	0	0	NA	0	0	NA	1.731976103	1	0	0.268023897	1	1	0.731976103	unphased	0.494687121	0.67582414	0.731976103	0.0025	0.9975	0	0	2	0.000119787	1	1	1	NA	NA	NA	NA
1351289	1206612168	PD9774b	18	60068853	C	G	-	-	-	-	-	-	27	0	0	52	7	13.46153846	0	0	NA	0	0	NA	1.731976103	1	0	0.268023897	1	1	0.731976103	unphased	0.832406212	1.137204082	0.731976103	0.00125	0.99625	0.0025	0	2	8.58E-09	1	1	1	NA	NA	NA	NA
1351289	1206612199	PD9774b	18	60513090	C	G	PHLPP1	CCDS45881.1	r.?	-	-	intronic	28	0	0	58	10	17.24137931	0	0	NA	0	0	NA	1.731976103	1	0	0.268023897	1	1	0.731976103	unphased	1.066136036	1.066136036	1	0.00125	0.99625	0.0025	0	2	4.10E-13	1	1	1	NA	NA	NA	NA
1351289	1206612524	PD9774b	18	64418849	A	G	-	-	-	-	-	-	33	0	0	57	5	8.771929825	0	0	NA	0	0	NA	1.731976103	1	0	0.268023897	1	1	0.731976103	unphased	0.542420088	0.741035241	0.731976103	0.00125	0.99875	0	0	2	1.05E-05	1	1	1	NA	NA	NA	NA
1351289	1206612537	PD9774b	18	64586266	A	G	-	-	-	-	-	-	48	0	0	61	7	11.47540984	0	0	NA	0	0	NA	1.731976103	1	0	0.268023897	1	1	0.731976103	unphased	0.709592181	0.969419873	0.731976103	0	1	0	0	2	2.69E-08	1	1	1	NA	NA	NA	NA
1351289	1206612678	PD9774b	18	66106315	A	G	-	-	-	-	-	-	32	0	0	45	8	17.77777778	0	0	NA	0	0	NA	1.731976103	1	0	0.268023897	1	1	0.731976103	unphased	1.099304712	1.099304712	1	0	1	0	0	2	7.14E-11	1	1	1	NA	NA	NA	NA
1351289	1206612909	PD9774b	18	68978526	T	G	-	-	-	-	-	-	30	0	0	36	4	11.11111111	0	0	NA	0	0	NA	1.731976103	1	0	0.268023897	1	1	0.731976103	unphased	0.687065445	0.938644639	0.731976103	0.00125	0.9975	0.00125	0	2	3.24E-05	1	1	1	NA	NA	NA	NA
1351289	1206613016	PD9774b	18	70215453	T	G	CBLN2	CCDS11999.1	r.?	-	-	upstream	32	0	0	69	11	15.94202899	0	0	NA	0	0	NA	1.731976103	1	0	0.268023897	1	1	0.731976103	unphased	0.985789552	0.985789552	1	0.00125	0.99625	0.0025	0	2	6.82E-14	1	1	1	NA	NA	NA	NA
1351289	1206613152	PD9774b	18	71700184	T	G	-	-	-	-	-	-	41	0	0	64	9	14.0625	0	0	NA	0	0	NA	1.731976103	1	0	0.268023897	1	1	0.731976103	unphased	0.869567204	0.869567204	1	0.00125	0.99875	0	0	2	4.20E-11	1	1	1	NA	NA	NA	NA
1351289	1206613216	PD9774b	18	72638121	C	G	ZNF407	CCDS45885.1	r.?	-	-	intronic	26	0	0	50	8	16	0	0	NA	0	0	NA	1.731976103	1	0	0.268023897	1	1	0.731976103	unphased	0.989374241	0.989374241	1	0.00125	0.99875	0	0	2	1.74E-10	1	1	1	NA	NA	NA	NA
1351289	1206613282	PD9774b	18	73508790	T	G	-	-	-	-	-	-	36	0	0	53	8	15.09433962	0	0	NA	0	0	NA	1.731976103	1	0	0.268023897	1	1	0.731976103	unphased	0.933371926	0.933371926	1	0	1	0	0	2	2.83E-10	1	1	1	NA	NA	NA	NA
1351289	1206613355	PD9774b	18	74569807	T	G	ZNF236	CCDS42447.1	r.?	-	-	intronic	37	0	0	61	11	18.03278689	0	0	NA	0	0	NA	1.731976103	1	0	0.268023897	1	1	0.731976103	unphased	1.115073427	1.115073427	1	0	1	0	0	2	1.62E-14	1	1	1	NA	NA	NA	NA
1351289	1206613405	PD9774b	18	74945900	C	G	-	-	-	-	-	-	18	0	0	42	11	26.19047619	0	0	NA	0	0	NA	1.731976103	1	0	0.268023897	1	1	0.731976103	unphased	1.619511406	1.619511406	1	0	0.98375	0.01625	0	2	1.81E-16	1	1	1	NA	NA	NA	NA
1351289	1206613409	PD9774b	18	74989481	A	G	-	-	-	-	-	-	47	0	0	50	7	14	0	0	NA	0	0	NA	1.731976103	1	0	0.268023897	1	1	0.731976103	unphased	0.865702461	0.865702461	1	0.0025	0.9975	0	0	2	6.46E-09	1	1	1	NA	NA	NA	NA
1351289	1206613449	PD9774b	18	75510019	T	G	-	-	-	-	-	-	39	0	0	72	4	5.555555556	0	0	NA	0	0	NA	1.731976103	1	0	0.268023897	1	1	0.731976103	unphased	0.343532723	0.469322319	0.731976103	0.01	0.99	0	0	2	0.000490365	1	1	1	NA	NA	NA	NA
1351289	1206613911	PD9774b	18	77951580	T	G	PARD6G	CCDS12022.1	r.?	-	-	intronic	35	0	0	63	7	11.11111111	0	0	NA	0	0	NA	1.731976103	1	0	0.268023897	1	1	0.731976103	unphased	0.687065445	0.938644639	0.731976103	0.00125	0.99875	0	0	2	3.38E-08	1	1	1	NA	NA	NA	NA
1351289	1206614241	PD9774b	19	3089535	C	G	GNA11	CCDS12103.1	r.?	-	-	upstream	29	0	0	43	4	9.302325581	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.414103526	0.414103526	1	0.0125	0.9875	0	0	2	6.60E-05	1	1	1	NA	NA	NA	NA
1351289	1206614333	PD9774b	19	3790960	C	G	MATK	CCDS12114.1	r.?	-	-	upstream	38	0	0	41	7	17.07317073	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.760031471	0.760031471	1	0	1	0	0	2	1.51E-09	1	1	1	NA	NA	NA	NA
1351289	1206615513	PD9774b	19	14705791	C	G	CLEC17A	CCDS46002.1	r.?	-	-	intronic	28	0	0	51	6	11.76470588	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.523719165	0.523719165	1	0.01125	0.98875	0	0	2	2.32E-07	1	1	1	NA	NA	NA	NA
1351289	1206615587	PD9774b	19	15398275	C	G	-	-	-	-	-	-	24	0	0	59	7	11.86440678	0	0	NA	0	0	NA	1.527660281	1	0	0.472339719	1	1	0.527660281	unphased	0.709405293	0.709405293	1	0.00375	0.99625	0	0	2	2.12E-08	1	1	1	NA	NA	NA	NA
1351289	1206615606	PD9774b	19	15640429	T	G	CYP4F22	CCDS12331.1	r.?	-	-	intronic	38	0	0	40	4	10	0	0	NA	0	0	NA	1.527660281	1	0	0.472339719	1	1	0.527660281	unphased	0.597927318	1.133167191	0.527660281	0.00125	0.99375	0.005	0	2	4.95E-05	1	1	1	NA	NA	NA	NA
1351289	1206615868	PD9774b	19	17500250	C	G	BST2	ENST00000416178	r.?	-	-	downstream	28	0	0	53	6	11.32075472	0	0	NA	0	0	NA	1.527660281	1	0	0.472339719	1	1	0.527660281	unphased	0.676898851	1.282830782	0.527660281	0.00125	0.99375	0.005	0	2	2.93E-07	1	1	1	NA	NA	NA	NA
1351289	1206616276	PD9774b	19	21348185	A	G	ZNF431	CCDS32979.1	r.?	-	-	intronic	24	0	0	56	5	8.928571429	0	0	NA	0	0	NA	1.527660281	1	0	0.472339719	1	1	0.527660281	unphased	0.533863677	1.01175642	0.527660281	0.00375	0.99375	0.0025	0	2	9.65E-06	1	1	1	NA	NA	NA	NA
1351289	1206616460	PD9774b	19	22434145	A	G	-	-	-	-	-	-	30	0	0	36	6	16.66666667	0	0	NA	0	0	NA	1.527660281	1	0	0.472339719	1	1	0.527660281	unphased	0.996545531	0.996545531	1	0.00375	0.99625	0	0	2	2.68E-08	1	1	1	NA	NA	NA	NA
1351289	1206617420	PD9774b	19	27862436	C	G	-	-	-	-	-	-	21	0	0	52	13	25	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.362903226	1.362903226	1	0	0.9925	0.0075	0	2	6.47E-19	1	1	1	NA	NA	NA	NA
1351289	1206617663	PD9774b	19	28829360	C	G	-	-	-	-	-	-	34	0	0	46	6	13.04347826	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.711079944	0.711079944	1	0.00125	0.99875	0	0	2	1.23E-07	1	1	1	NA	NA	NA	NA
1351289	1206617765	PD9774b	19	29991590	C	G	-	-	-	-	-	-	47	0	0	59	14	23.72881356	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.293603062	1.293603062	1	0	0.995	0.005	0	2	6.58E-20	1	1	1	NA	NA	NA	NA
1351289	1206617939	PD9774b	19	31893808	A	G	ENSG00000232700	ENST00000441786	r.?	-	-	intronic	19	0	0	52	5	9.615384615	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.524193548	0.524193548	1	0.00625	0.99375	0	0	2	6.68E-06	1	1	1	NA	NA	NA	NA
1351289	1206618040	PD9774b	19	33149794	A	G	ANKRD27	CCDS32986.1	r.?	-	-	intronic	42	0	0	56	7	12.5	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.681451613	0.681451613	1	0	1	0	0	2	1.46E-08	1	1	1	NA	NA	NA	NA
1351289	1206618046	PD9774b	19	33180224	C	G	NUDT19	CCDS42543.1	r.?	-	-	upstream	25	0	0	46	9	19.56521739	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.066619916	1.066619916	1	0	0.99875	0.00125	0	2	1.82E-12	1	1	1	NA	NA	NA	NA
1351289	1206618143	PD9774b	19	33711629	C	G	SLC7A10	CCDS12431.1	r.?	-	-	intronic	32	0	0	67	5	7.462686567	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.406836784	0.406836784	1	0.02875	0.97125	0	0	2	2.33E-05	1	1	1	NA	NA	NA	NA
1351289	1206618362	PD9774b	19	36152756	C	G	UPK1A	CCDS12470.1	r.?	-	-	upstream	26	0	0	60	4	6.666666667	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.36344086	0.36344086	1	0.03625	0.96375	0	0	2	0.000243755	1	1	1	NA	NA	NA	NA
1351289	1206618419	PD9774b	19	36730874	C	G	ZNF146	CCDS12492.1	r.?	-	-	downstream	34	0	0	51	4	7.843137255	0	0	NA	1	0	0	1	1	0	1	NA	NA	NA	unphased	0.427577483	0.427577483	1	0.01	0.99	0	0	2	0.000129466	1	1	1	NA	NA	NA	NA
1351289	1206618773	PD9774b	19	39499106	A	G	-	-	-	-	-	-	34	0	0	53	5	9.433962264	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.514303104	0.514303104	1	0.0125	0.9875	0	0	2	7.34E-06	1	1	1	NA	NA	NA	NA
1351289	1206619278	PD9774b	19	44263735	C	G	C19orf61	CCDS33043.2	r.?	-	-	upstream	37	0	0	52	5	9.615384615	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.524193548	0.524193548	1	0.0175	0.9825	0	0	2	6.68E-06	1	1	1	NA	NA	NA	NA
1351289	1206619593	PD9774b	19	46602195	C	G	-	-	-	-	-	-	32	0	0	46	4	8.695652174	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.474053296	0.474053296	1	0.0125	0.9875	0	0	2	8.62E-05	1	1	1	NA	NA	NA	NA
1351289	1206619850	PD9774b	19	48654695	C	G	LIG1	CCDS12711.1	r.?	-	-	intronic	29	0	0	66	6	9.090909091	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.495601173	0.495601173	1	0.0175	0.9825	0	0	2	1.10E-06	1	1	1	NA	NA	NA	NA
1351289	1206620026	PD9774b	19	49875782	C	G	DKKL1	CCDS12762.1	r.?	-	-	intronic	27	0	0	44	10	22.72727273	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.239002933	1.239002933	1	0	0.99625	0.00375	0	2	2.08E-14	1	1	1	NA	NA	NA	NA
1351289	1206620587	PD9774b	19	54329608	C	G	NLRP12	CCDS12864.1	r.?	-	-	upstream	25	0	0	35	7	20	0	0	NA	0	0	NA	1.434080173	1	0	0.565919827	1	1	0.434080173	unphased	1.177138615	1.177138615	1	0	0.99875	0.00125	0	2	4.65E-10	1	1	1	NA	NA	NA	NA
1351289	1206620890	PD9774b	19	56239144	C	G	NLRP9	CCDS12934.1	r.?	-	-	intronic	34	0	0	54	6	11.11111111	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	0.827956989	0.827956989	1	0.005	0.995	0	0	2	3.29E-07	1	1	1	NA	NA	NA	NA
1351289	1206621104	PD9774b	19	57576667	A	G	-	-	-	-	-	-	25	0	0	48	6	12.5	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	0.931451613	0.931451613	1	0.00125	0.99875	0	0	2	1.60E-07	1	1	1	NA	NA	NA	NA
1351289	1206621145	PD9774b	19	57953719	C	G	ZNF749	CCDS33132.2	r.?	-	-	intronic	26	0	0	57	4	7.01754386	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	0.522920204	0.522920204	1	0.0075	0.9925	0	0	2	0.000199821	1	1	1	NA	NA	NA	NA
1351289	1206621406	PD9774b	2	880358	C	G	-	-	-	-	-	-	27	0	0	58	7	12.06896552	0	0	NA	0	0	NA	0.762600955	0	0	0.237399045	1	0	0.762600955	unphased	0.629301673	0.825204411	0.762600955	0.00125	0.99875	0	0	2	1.88E-08	1	1	1	NA	NA	NA	NA
1351289	1206622182	PD9774b	2	8745478	T	G	-	-	-	-	-	-	33	0	0	53	12	22.64150943	0	0	NA	0	0	NA	0.762600955	0	0	0.237399045	1	0	0.762600955	unphased	1.180576723	1.180576723	1	0	1	0	0	2	5.39E-17	1	1	1	NA	NA	NA	NA
1351289	1206622581	PD9774b	2	12583171	C	G	-	-	-	-	-	-	32	0	0	47	8	17.0212766	0	0	NA	0	0	NA	0.762600955	0	0	0.237399045	1	0	0.762600955	unphased	0.887525763	0.887525763	1	0.00125	0.9975	0.00125	0	2	1.03E-10	1	1	1	NA	NA	NA	NA
1351289	1206622612	PD9774b	2	13160017	A	G	-	-	-	-	-	-	34	0	0	57	7	12.28070175	0	0	NA	0	0	NA	0.762600955	0	0	0.237399045	1	0	0.762600955	unphased	0.640342053	0.839681682	0.762600955	0	0.9975	0.0025	0	2	1.66E-08	1	1	1	NA	NA	NA	NA
1351289	1206622625	PD9774b	2	13382224	A	G	-	-	-	-	-	-	40	0	0	45	4	8.888888889	0	0	NA	0	0	NA	0.762600955	0	0	0.237399045	1	0	0.762600955	unphased	0.463485676	0.607769598	0.762600955	0.00125	0.99875	0	0	2	7.91E-05	1	1	1	NA	NA	NA	NA
1351289	1206622697	PD9774b	2	14396355	C	G	-	-	-	-	-	-	26	0	0	56	4	7.142857143	0	0	NA	0	0	NA	0.762600955	0	0	0.237399045	1	0	0.762600955	unphased	0.372443847	0.488386284	0.762600955	0.00625	0.9925	0.00125	0	2	0.000186538	1	1	1	NA	NA	NA	NA
1351289	1206622891	PD9774b	2	17170460	C	G	-	-	-	-	-	-	36	0	0	55	8	14.54545455	0	0	NA	0	0	NA	0.762600955	0	0	0.237399045	1	0	0.762600955	unphased	0.758431107	0.99453207	0.762600955	0	1	0	0	2	3.86E-10	1	1	1	NA	NA	NA	NA
1351289	1206622959	PD9774b	2	18309194	C	G	-	-	-	-	-	-	32	0	0	45	4	8.888888889	0	0	NA	0	0	NA	0.762600955	0	0	0.237399045	1	0	0.762600955	unphased	0.463485676	0.607769598	0.762600955	0.00625	0.99375	0	0	2	7.91E-05	1	1	1	NA	NA	NA	NA
1351289	1206623118	PD9774b	2	20567733	A	G	-	-	-	-	-	-	32	0	0	58	6	10.34482759	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.667408231	0.667408231	1	0.0025	0.9975	0	0	2	5.06E-07	1	1	1	NA	NA	NA	NA
1351289	1206623152	PD9774b	2	21113190	C	G	-	-	-	-	-	-	39	0	0	35	4	11.42857143	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.737327189	0.737327189	1	0.0025	0.99625	0.00125	0	2	2.89E-05	1	1	1	NA	NA	NA	NA
1351289	1206623195	PD9774b	2	21776192	A	G	-	-	-	-	-	-	30	0	0	66	9	13.63636364	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.879765396	0.879765396	1	0	1	0	0	2	5.59E-11	1	1	1	NA	NA	NA	NA
1351289	1206623206	PD9774b	2	22211280	A	G	-	-	-	-	-	-	39	0	0	64	7	10.9375	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.705645161	0.705645161	1	0.005	0.995	0	0	2	3.78E-08	1	1	1	NA	NA	NA	NA
1351289	1206623217	PD9774b	2	22324057	A	G	-	-	-	-	-	-	32	0	0	64	5	7.8125	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.504032258	0.504032258	1	0.0075	0.9925	0	0	2	1.86E-05	1	1	1	NA	NA	NA	NA
1351289	1206623251	PD9774b	2	22790996	A	G	-	-	-	-	-	-	31	0	0	81	25	30.86419753	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	2.299880526	1.149940263	2	0	1	0	0	2	1.20E-37	1	1	1	NA	NA	NA	NA
1351289	1206623262	PD9774b	2	22875141	A	G	-	-	-	-	-	-	38	0	0	74	6	8.108108108	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	0.60418483	0.60418483	1	0.00625	0.99375	0	0	2	2.16E-06	1	1	1	NA	NA	NA	NA
1351289	1206623591	PD9774b	2	25393116	C	G	POMC	CCDS1717.1	r.?	-	-	upstream	30	0	0	70	5	7.142857143	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	0.532258065	0.532258065	1	0.015	0.985	0	0	2	2.89E-05	1	1	1	NA	NA	NA	NA
1351289	1206623729	PD9774b	2	26428510	C	G	HADHA	CCDS1721.1	r.?	-	-	intronic	27	0	0	69	9	13.04347826	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	0.971949509	0.971949509	1	0.00125	0.99875	0	0	2	8.45E-11	1	1	1	NA	NA	NA	NA
1351289	1206623750	PD9774b	2	26614956	C	G	EPT1	CCDS46240.1	r.4298c>g	c.?	p.?	3'UTR variant	41	0	0	90	7	7.777777778	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	0.579569892	0.579569892	1	0.0075	0.9925	0	0	2	4.06E-07	1	1	1	NA	NA	NA	NA
1351289	1206623830	PD9774b	2	27241395	T	G	MAPRE3	CCDS1731.1	r.?	-	-	intronic	37	0	0	74	10	13.51351351	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	1.006974717	1.006974717	1	0	1	0	0	2	5.24E-12	1	1	1	NA	NA	NA	NA
1351289	1206623831	PD9774b	2	27241396	C	G	MAPRE3	CCDS1731.1	r.?	-	-	intronic	36	0	0	74	10	13.51351351	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	1.006974717	1.006974717	1	0	1	0	0	2	5.24E-12	1	1	1	NA	NA	NA	NA
1351289	1206623957	PD9774b	2	28397170	C	G	BRE	CCDS1764.1	r.?	-	-	intronic	42	0	0	65	5	7.692307692	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	0.573200993	0.573200993	1	0.01	0.99	0	0	2	2.01E-05	1	1	1	NA	NA	NA	NA
1351289	1206624015	PD9774b	2	28781881	C	G	PLB1	CCDS33168.1	r.?	-	-	intronic	43	0	0	57	4	7.01754386	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	0.522920204	0.522920204	1	0.0025	0.9975	0	0	2	0.000199821	1	1	1	NA	NA	NA	NA
1351289	1206624111	PD9774b	2	29684185	A	G	ALK	CCDS33172.1	r.?	-	-	intronic	25	0	0	68	12	17.64705882	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	1.314990512	1.314990512	1	0	0.99875	0.00125	0	2	1.37E-15	1	1	1	NA	NA	NA	NA
1351289	1206624212	PD9774b	2	30705885	T	G	LCLAT1	CCDS1772.1	r.?	-	-	intronic	35	0	0	66	11	16.66666667	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	1.241935484	1.241935484	1	0.00125	0.9975	0.00125	0	2	4.07E-14	1	1	1	NA	NA	NA	NA
1351289	1206624228	PD9774b	2	31004530	C	G	CAPN13	CCDS46252.1	r.?	-	-	intronic	31	0	0	57	6	10.52631579	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	0.784380306	0.784380306	1	0.0025	0.9975	0	0	2	4.56E-07	1	1	1	NA	NA	NA	NA
1351289	1206624332	PD9774b	2	32193705	C	G	MEMO1	CCDS46255.1	r.?	-	-	intronic	27	0	0	42	10	23.80952381	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	1.774193548	0.887096774	2	0	1	0	0	2	1.24E-14	1	1	1	NA	NA	NA	NA
1351289	1206624371	PD9774b	2	32566511	A	G	-	-	-	-	-	-	28	0	0	57	7	12.28070175	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	0.915110357	0.915110357	1	0.00125	0.99875	0	0	2	1.66E-08	1	1	1	NA	NA	NA	NA
1351289	1206624383	PD9774b	2	32741781	C	G	BIRC6	CCDS33175.2	r.?	-	-	intronic	33	0	0	53	4	7.547169811	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	0.562385879	0.562385879	1	0.0025	0.9975	0	0	2	0.000150502	1	1	1	NA	NA	NA	NA
1351289	1206624442	PD9774b	2	33384155	C	G	LTBP1	CCDS33177.1	r.?	-	-	intronic	38	0	0	57	6	10.52631579	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	0.784380306	0.784380306	1	0.0025	0.9975	0	0	2	4.56E-07	1	1	1	NA	NA	NA	NA
1351289	1206624538	PD9774b	2	34456592	C	G	-	-	-	-	-	-	41	0	0	64	8	12.5	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	0.931451613	0.931451613	1	0	1	0	0	2	1.35E-09	1	1	1	NA	NA	NA	NA
1351289	1206624541	PD9774b	2	34532987	C	G	-	-	-	-	-	-	39	0	0	48	8	16.66666667	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	1.241935484	1.241935484	1	0.00125	0.995	0.00375	0	2	1.23E-10	1	1	1	NA	NA	NA	NA
1351289	1206624560	PD9774b	2	34829570	A	G	-	-	-	-	-	-	36	0	0	58	6	10.34482759	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	0.770856507	0.770856507	1	0.00375	0.99625	0	0	2	5.06E-07	1	1	1	NA	NA	NA	NA
1351289	1206624721	PD9774b	2	36274657	C	G	-	-	-	-	-	-	29	0	0	51	6	11.76470588	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	0.876660342	0.876660342	1	0.00125	0.99875	0	0	2	2.32E-07	1	1	1	NA	NA	NA	NA
1351289	1206624850	PD9774b	2	37507297	C	G	PRKD3	CCDS1789.1	r.?	-	-	intronic	40	0	0	62	5	8.064516129	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	0.600936524	0.600936524	1	0.00125	0.99875	0	0	2	1.60E-05	1	1	1	NA	NA	NA	NA
1351289	1206624891	PD9774b	2	37905490	T	G	CDC42EP3	ENST00000453555	r.?	-	-	intronic	35	0	0	65	4	6.153846154	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	0.458560794	0.458560794	1	0.01375	0.98625	0	0	2	0.000331785	1	1	1	NA	NA	NA	NA
1351289	1206625320	PD9774b	2	40843754	A	G	-	-	-	-	-	-	45	0	0	64	10	15.625	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	1.164314516	1.164314516	1	0	0.9975	0.0025	0	2	1.16E-12	1	1	1	NA	NA	NA	NA
1351289	1206625519	PD9774b	2	42857209	C	G	MTA3	CCDS46267.1	r.?	-	-	intronic	35	0	0	52	6	11.53846154	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.744416873	0.744416873	1	0	1	0	0	2	2.61E-07	1	1	1	NA	NA	NA	NA
1351289	1206626028	PD9774b	2	48781829	C	G	STON1	CCDS1841.1	r.?	-	-	intronic	25	0	0	34	3	8.823529412	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.569259962	0.569259962	1	0.005	0.995	0	0	2	0.000666058	1	1	1	NA	NA	NA	NA
1351289	1206626114	PD9774b	2	49802528	T	G	-	-	-	-	-	-	30	0	0	65	5	7.692307692	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.496277916	0.496277916	1	0.01	0.99	0	0	2	2.01E-05	1	1	1	NA	NA	NA	NA
1351289	1206626172	PD9774b	2	50847802	C	G	NRXN1	CCDS46282.1	r.?	-	-	intronic	24	0	0	71	4	5.633802817	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.363471149	0.363471149	1	0.01625	0.98375	0	0	2	0.000464961	1	1	1	NA	NA	NA	NA
1351289	1206626210	PD9774b	2	51340010	C	G	-	-	-	-	-	-	31	0	0	49	8	16.32653061	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.053324556	1.053324556	1	0	0.99875	0.00125	0	2	1.47E-10	1	1	1	NA	NA	NA	NA
1351289	1206626280	PD9774b	2	52320441	C	G	-	-	-	-	-	-	35	0	0	39	8	20.51282051	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.323407775	1.323407775	1	0	0.9975	0.0025	0	2	2.09E-11	1	1	1	NA	NA	NA	NA
1351289	1206626467	PD9774b	2	55049847	A	G	EML6	CCDS46286.1	r.?	-	-	intronic	29	0	0	70	5	7.142857143	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.460829493	0.460829493	1	0.01625	0.98375	0	0	2	2.89E-05	1	1	1	NA	NA	NA	NA
1351289	1206626663	PD9774b	2	57795577	A	G	-	-	-	-	-	-	29	0	0	49	4	8.163265306	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.526662278	0.526662278	1	0.00375	0.99625	0	0	2	0.000110643	1	1	1	NA	NA	NA	NA
1351289	1206626790	PD9774b	2	60018660	A	G	-	-	-	-	-	-	28	0	0	63	7	11.11111111	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.716845878	0.716845878	1	0.00375	0.99625	0	0	2	3.38E-08	1	1	1	NA	NA	NA	NA
1351289	1206626795	PD9774b	2	60052977	A	G	-	-	-	-	-	-	37	0	0	78	13	16.66666667	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.075268817	1.075268817	1	0	1	0	0	2	1.99E-16	1	1	1	NA	NA	NA	NA
1351289	1206626863	PD9774b	2	60852100	A	G	-	-	-	-	-	-	34	0	0	50	5	10	0	0	NA	0	0	NA	1.588737909	1	0	0.411262091	1	1	0.588737909	unphased	0.604035081	1.025982991	0.588737909	0.0025	0.9975	0	0	2	5.49E-06	1	1	1	NA	NA	NA	NA
1351289	1206627173	PD9774b	2	64267743	T	G	-	-	-	-	-	-	19	0	0	47	5	10.63829787	0	0	NA	0	0	NA	1.588737909	1	0	0.411262091	1	1	0.588737909	unphased	0.642590512	1.091471268	0.588737909	0.00125	0.99625	0.0025	0	2	4.02E-06	1	1	1	NA	NA	NA	NA
1351289	1206627194	PD9774b	2	64691757	C	G	ENSG00000119862	CCDS1877.1	r.?	-	-	downstream	24	0	0	57	4	7.01754386	0	0	NA	0	0	NA	1.588737909	1	0	0.411262091	1	1	0.588737909	unphased	0.423884268	0.719988064	0.588737909	0	1	0	0	2	0.000199821	1	1	1	NA	NA	NA	NA
1351289	1206627251	PD9774b	2	65210085	A	G	-	-	-	-	-	-	44	0	0	63	12	19.04761905	0	0	NA	0	0	NA	1.588737909	1	0	0.411262091	1	1	0.588737909	unphased	1.150543012	1.150543012	1	0	0.99875	0.00125	0	2	5.15E-16	1	1	1	NA	NA	NA	NA
1351289	1206627441	PD9774b	2	67143448	T	G	-	-	-	-	-	-	35	0	0	37	3	8.108108108	0	0	NA	0	0	NA	1.588737909	1	0	0.411262091	1	1	0.588737909	unphased	0.489758174	0.831878101	0.588737909	0.00625	0.9925	0.00125	0	2	0.000855237	1	1	1	NA	NA	NA	NA
1351289	1206627651	PD9774b	2	69912949	T	G	-	-	-	-	-	-	32	0	0	44	9	20.45454545	0	0	NA	0	0	NA	1.588737909	1	0	0.411262091	1	1	0.588737909	unphased	1.235526303	1.235526303	1	0.00125	0.99625	0.0025	0	2	1.18E-12	1	1	1	NA	NA	NA	NA
1351289	1206627855	PD9774b	2	72544792	C	G	EXOC6B	CCDS46333.1	r.?	-	-	intronic	36	0	0	46	7	15.2173913	0	0	NA	0	0	NA	1.588737909	1	0	0.411262091	1	1	0.588737909	unphased	0.919183819	0.919183819	1	0	1	0	0	2	3.53E-09	1	1	1	NA	NA	NA	NA
1351289	1206628213	PD9774b	2	77324688	A	G	LRRTM4	CCDS46346.1	r.?	-	-	intronic	41	0	0	53	7	13.20754717	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.852099817	0.852099817	1	0.005	0.995	0	0	2	9.85E-09	1	1	1	NA	NA	NA	NA
1351289	1206628285	PD9774b	2	78131723	C	G	-	-	-	-	-	-	29	0	0	61	7	11.47540984	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.740349022	0.740349022	1	0.00625	0.99375	0	0	2	2.69E-08	1	1	1	NA	NA	NA	NA
1351289	1206628314	PD9774b	2	78403223	C	G	-	-	-	-	-	-	31	0	0	64	4	6.25	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.403225806	0.403225806	1	0.0125	0.9875	0	0	2	0.000312605	1	1	1	NA	NA	NA	NA
1351289	1206628318	PD9774b	2	78572427	T	G	-	-	-	-	-	-	32	0	0	66	5	7.575757576	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.488758553	0.488758553	1	0.00875	0.99125	0	0	2	2.17E-05	1	1	1	NA	NA	NA	NA
1351289	1206628361	PD9774b	2	79047301	C	G	-	-	-	-	-	-	36	0	0	53	5	9.433962264	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.608642727	0.608642727	1	0.00125	0.99875	0	0	2	7.34E-06	1	1	1	NA	NA	NA	NA
1351289	1206628377	PD9774b	2	79217913	A	G	-	-	-	-	-	-	37	0	0	63	11	17.46031746	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.126472094	1.126472094	1	0	1	0	0	2	2.37E-14	1	1	1	NA	NA	NA	NA
1351289	1206628390	PD9774b	2	79337206	T	G	-	-	-	-	-	-	45	0	0	56	5	8.928571429	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.576036866	0.576036866	1	0.005	0.995	0	0	2	9.65E-06	1	1	1	NA	NA	NA	NA
1351289	1206628489	PD9774b	2	80454279	C	G	CTNNA2	CCDS42703.2	r.?	-	-	intronic	45	0	0	46	7	15.2173913	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.981767181	0.981767181	1	0.00375	0.995	0.00125	0	2	3.53E-09	1	1	1	NA	NA	NA	NA
1351289	1206628512	PD9774b	2	80773650	A	G	CTNNA2	CCDS42703.2	r.?	-	-	intronic	37	0	0	50	9	18	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.161290323	1.161290323	1	0	0.9975	0.0025	0	2	4.07E-12	1	1	1	NA	NA	NA	NA
1351289	1206628650	PD9774b	2	82174359	A	G	-	-	-	-	-	-	43	0	0	56	8	14.28571429	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.921658986	0.921658986	1	0	1	0	0	2	4.48E-10	1	1	1	NA	NA	NA	NA
1351289	1206628670	PD9774b	2	82380438	A	G	-	-	-	-	-	-	31	0	0	77	10	12.98701299	0	0	NA	2	2	100	2	1	1	1	NA	NA	NA	unphased	0.837871806	0.837871806	1	0.0025	0.9975	0	0	2	7.90E-12	1	2.50E-05	1	NA	NA	NA	NA
1351289	1206629037	PD9774b	2	87046019	A	G	CD8B	CCDS42708.1	r.?	-	-	intronic	35	0	0	60	9	15	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.967741935	0.967741935	1	0	1	0	0	2	2.29E-11	1	1	1	NA	NA	NA	NA
1351289	1206629067	PD9774b	2	87270841	T	G	-	-	-	-	-	-	6	0	0	17	3	17.64705882	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.138519924	1.138519924	1	0.0025	0.99125	0.00625	0	2	8.07E-05	1	1	1	NA	NA	NA	NA
1351289	1206633939	PD9774b	2	98480050	A	G	TMEM131	CCDS46368.1	r.?	-	-	intronic	40	0	0	61	8	13.1147541	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.846113168	0.846113168	1	0.00125	0.99875	0	0	2	9.09E-10	1	1	1	NA	NA	NA	NA
1351289	1206633994	PD9774b	2	99110730	C	G	INPP4A	CCDS46369.1	r.?	-	-	intronic	31	0	0	62	9	14.51612903	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.936524454	0.936524454	1	0	1	0	0	2	3.12E-11	1	1	1	NA	NA	NA	NA
1351289	1206634270	PD9774b	2	102200909	C	G	-	-	-	-	-	-	34	0	0	63	19	30.15873016	0	0	NA	0	0	NA	4	3	1	1	NA	NA	NA	unphased	2.54889913	0.849633043	3	0	1	0	0	2	9.48E-29	1	1	1	NA	NA	NA	NA
1351289	1206634431	PD9774b	2	104329863	A	G	-	-	-	-	-	-	29	0	0	47	6	12.76595745	0	0	NA	0	0	NA	1.576711255	1	0	0.423288745	1	1	0.576711255	unphased	0.769573297	0.769573297	1	0.00125	0.9975	0.00125	0	2	1.41E-07	1	1	1	NA	NA	NA	NA
1351289	1206634441	PD9774b	2	104465137	A	G	-	-	-	-	-	-	31	0	0	51	5	9.803921569	0	0	NA	0	0	NA	1.576711255	1	0	0.423288745	1	1	0.576711255	unphased	0.591012172	1.024797361	0.576711255	0.00125	0.9975	0.00125	0	2	6.06E-06	1	1	1	NA	NA	NA	NA
1351289	1206634501	PD9774b	2	105560856	A	G	-	-	-	-	-	-	35	0	0	61	5	8.196721311	0	0	NA	0	0	NA	1.576711255	1	0	0.423288745	1	1	0.576711255	unphased	0.494124931	0.856797794	0.576711255	0.00125	0.99875	0	0	2	1.47E-05	1	1	1	NA	NA	NA	NA
1351289	1206634680	PD9774b	2	107443327	C	G	ST6GAL2	CCDS2073.1	r.?	-	-	intronic	38	0	0	49	4	8.163265306	0	0	NA	0	0	NA	1.576711255	1	0	0.423288745	1	1	0.576711255	unphased	0.492108095	0.85330066	0.576711255	0.00125	0.99625	0.0025	0	2	0.000110643	1	1	1	NA	NA	NA	NA
1351289	1206634682	PD9774b	2	107537816	A	G	-	-	-	-	-	-	39	0	0	40	8	20	0	0	NA	0	0	NA	1.576711255	1	0	0.423288745	1	1	0.576711255	unphased	1.205664832	1.205664832	1	0	0.99875	0.00125	0	2	2.61E-11	1	1	1	NA	NA	NA	NA
1351289	1206634707	PD9774b	2	108067544	C	G	-	-	-	-	-	-	30	0	0	42	6	14.28571429	0	0	NA	0	0	NA	1.576711255	1	0	0.423288745	1	1	0.576711255	unphased	0.861189165	0.861189165	1	0.00375	0.99625	0	0	2	7.02E-08	1	1	1	NA	NA	NA	NA
1351289	1206634767	PD9774b	2	108850308	C	G	-	-	-	-	-	-	30	0	0	72	7	9.722222222	0	0	NA	0	0	NA	1.576711255	1	0	0.423288745	1	1	0.576711255	unphased	0.586087071	1.016257383	0.576711255	0.0025	0.9975	0	0	2	8.66E-08	1	1	1	NA	NA	NA	NA
1351289	1206634785	PD9774b	2	109079634	C	G	GCC2	CCDS46382.1	r.?	-	-	intronic	39	0	0	35	5	14.28571429	0	0	NA	0	0	NA	1.576711255	1	0	0.423288745	1	1	0.576711255	unphased	0.861189165	0.861189165	1	0.00125	0.99875	0	0	2	8.95E-07	1	1	1	NA	NA	NA	NA
1351289	1206635000	PD9774b	2	112015951	C	G	-	-	-	-	-	-	31	0	0	42	6	14.28571429	0	0	NA	0	0	NA	1.576711255	1	0	0.423288745	1	1	0.576711255	unphased	0.861189165	0.861189165	1	0.00125	0.99875	0	0	2	7.02E-08	1	1	1	NA	NA	NA	NA
1351289	1206635019	PD9774b	2	112099803	T	G	-	-	-	-	-	-	13	0	0	12	4	33.33333333	0	0	NA	0	0	NA	1.576711255	1	0	0.423288745	1	1	0.576711255	unphased	2.009441386	2.009441386	1	0	0.9925	0.0075	0	2	3.00E-07	1	1	1	NA	NA	NA	NA
1351289	1206635232	PD9774b	2	114029561	C	G	PAX8	CCDS46398.1	r.?	-	-	intronic	30	0	0	57	8	14.03508772	0	0	NA	0	0	NA	1.576711255	1	0	0.423288745	1	1	0.576711255	unphased	0.846080584	0.846080584	1	0.00125	0.99875	0	0	2	5.19E-10	1	1	1	NA	NA	NA	NA
1351289	1206635483	PD9774b	2	115119334	A	G	-	-	-	-	-	-	30	0	0	49	5	10.20408163	0	0	NA	0	0	NA	1.576711255	1	0	0.423288745	1	1	0.576711255	unphased	0.615135118	1.066625825	0.576711255	0	1	0	0	2	4.96E-06	1	1	1	NA	NA	NA	NA
1351289	1206635847	PD9774b	2	119148940	C	G	-	-	-	-	-	-	29	0	0	60	4	6.666666667	0	0	NA	0	0	NA	1.576711255	1	0	0.423288745	1	1	0.576711255	unphased	0.401888277	0.696862206	0.576711255	0.0025	0.9975	0	0	2	0.000243755	1	1	1	NA	NA	NA	NA
1351289	1206635953	PD9774b	2	120781439	A	G	EPB41L5	CCDS2130.1	r.?	-	-	intronic	39	0	0	47	8	17.0212766	0	0	NA	0	0	NA	1.576711255	1	0	0.423288745	1	1	0.576711255	unphased	1.026097729	1.026097729	1	0.00125	0.99875	0	0	2	1.03E-10	1	1	1	NA	NA	NA	NA
1351289	1206636073	PD9774b	2	122143769	T	G	CLASP1	ENST00000263710	r.?	-	-	intronic	44	0	0	57	13	22.80701754	0	0	NA	0	0	NA	1.576711255	1	0	0.423288745	1	1	0.576711255	unphased	1.374880948	1.374880948	1	0	0.9975	0.0025	0	2	2.44E-18	1	1	1	NA	NA	NA	NA
1351289	1206636100	PD9774b	2	122577722	A	G	-	-	-	-	-	-	37	0	0	46	6	13.04347826	0	0	NA	0	0	NA	1.576711255	1	0	0.423288745	1	1	0.576711255	unphased	0.786303151	0.786303151	1	0.00125	0.99875	0	0	2	1.23E-07	1	1	1	NA	NA	NA	NA
1351289	1206636233	PD9774b	2	124232801	C	G	-	-	-	-	-	-	26	0	0	50	7	14	0	0	NA	0	0	NA	0.854554788	0	0	0.145445212	1	0	0.854554788	unphased	0.742863477	0.869298829	0.854554788	0.00125	0.99875	0	0	2	6.46E-09	1	1	1	NA	NA	NA	NA
1351289	1206636290	PD9774b	2	125311698	A	G	CNTNAP5	CCDS46401.1	r.?	-	-	intronic	40	0	0	51	7	13.7254902	0	0	NA	0	0	NA	0.854554788	0	0	0.145445212	1	0	0.854554788	unphased	0.728297526	0.852253754	0.854554788	0.00125	0.99875	0	0	2	7.46E-09	1	1	1	NA	NA	NA	NA
1351289	1206636475	PD9774b	2	128094411	T	G	MAP3K2	CCDS46404.1	r.?	-	-	intronic	30	0	0	43	5	11.62790698	0	0	NA	0	0	NA	0.854554788	0	0	0.145445212	1	0	0.854554788	unphased	0.616996243	0.722008994	0.854554788	0.00625	0.9925	0.00125	0	2	2.57E-06	1	1	1	NA	NA	NA	NA
1351289	1206636512	PD9774b	2	128577675	C	G	-	-	-	-	-	-	34	0	0	35	6	17.14285714	0	0	NA	0	0	NA	0.854554788	0	0	0.145445212	1	0	0.854554788	unphased	0.909628747	1.064447546	0.854554788	0	1	0	0	2	2.24E-08	1	1	1	NA	NA	NA	NA
1351289	1206636584	PD9774b	2	129427929	C	G	-	-	-	-	-	-	21	0	0	53	9	16.98113208	0	0	NA	0	0	NA	0.854554788	0	0	0.145445212	1	0	0.854554788	unphased	0.901047344	1.054405588	0.854554788	0.00125	0.9975	0.00125	0	2	7.10E-12	1	1	1	NA	NA	NA	NA
1351289	1206636656	PD9774b	2	130484331	C	G	-	-	-	-	-	-	38	0	0	52	5	9.615384615	0	0	NA	0	0	NA	0.854554788	0	0	0.145445212	1	0	0.854554788	unphased	0.510208432	0.597045899	0.854554788	0.00375	0.99625	0	0	2	6.68E-06	1	1	1	NA	NA	NA	NA
1351289	1206639060	PD9774b	2	134993559	C	G	MGAT5	CCDS2171.1	r.?	-	-	intronic	37	0	0	59	6	10.16949153	0	0	NA	0	0	NA	0.854554788	0	0	0.145445212	1	0	0.854554788	unphased	0.539610274	0.631451934	0.854554788	0.00875	0.99125	0	0	2	5.61E-07	1	1	1	NA	NA	NA	NA
1351289	1206639284	PD9774b	2	138438553	T	G	THSD7B	ENST00000409968	r.?	-	-	downstream	41	0	0	39	4	10.25641026	0	0	NA	0	0	NA	0.854554788	0	0	0.145445212	1	0	0.854554788	unphased	0.544222327	0.636848959	0.854554788	0.00375	0.99625	0	0	2	4.47E-05	1	1	1	NA	NA	NA	NA
1351289	1206639411	PD9774b	2	140073704	C	G	-	-	-	-	-	-	29	0	0	32	6	18.75	0	0	NA	0	0	NA	0.854554788	0	0	0.145445212	1	0	0.854554788	unphased	0.994906442	0.994906442	1	0.00125	0.9975	0.00125	0	2	1.27E-08	1	1	1	NA	NA	NA	NA
1351289	1206639414	PD9774b	2	140095462	T	G	-	-	-	-	-	-	32	0	0	50	11	22	0	0	NA	0	0	NA	0.854554788	0	0	0.145445212	1	0	0.854554788	unphased	1.167356892	1.167356892	1	0	0.99875	0.00125	0	2	1.52E-15	1	1	1	NA	NA	NA	NA
1351289	1206639863	PD9774b	2	145687883	C	G	-	-	-	-	-	-	37	0	0	44	7	15.90909091	0	0	NA	0	0	NA	0.854554788	0	0	0.145445212	1	0	0.854554788	unphased	0.844163042	0.987839579	0.854554788	0	1	0	0	2	2.55E-09	1	1	1	NA	NA	NA	NA
1351289	1206640040	PD9774b	2	148563670	T	G	-	-	-	-	-	-	38	0	0	40	8	20	0	0	NA	0	0	NA	0.854554788	0	0	0.145445212	1	0	0.854554788	unphased	1.061233538	1.061233538	1	0	0.99875	0.00125	0	2	2.61E-11	1	1	1	NA	NA	NA	NA
1351289	1206640087	PD9774b	2	149158281	T	G	MBD5	CCDS33302.1	r.?	-	-	intronic	32	0	0	48	5	10.41666667	0	0	NA	0	0	NA	0.854554788	0	0	0.145445212	1	0	0.854554788	unphased	0.552725801	0.646799724	0.854554788	0.0025	0.9975	0	0	2	4.47E-06	1	1	1	NA	NA	NA	NA
1351289	1206640269	PD9774b	2	151803500	T	G	-	-	-	-	-	-	30	0	0	49	6	12.24489796	0	0	NA	0	0	NA	0.854554788	0	0	0.145445212	1	0	0.854554788	unphased	0.649734819	0.760319676	0.854554788	0.00375	0.99625	0	0	2	1.82E-07	1	1	1	NA	NA	NA	NA
1351289	1206640331	PD9774b	2	152460254	C	G	NEB	CCDS46424.1	r.?	-	-	intronic	56	0	0	71	6	8.450704225	0	0	NA	0	0	NA	0.854554788	0	0	0.145445212	1	0	0.854554788	unphased	0.448408537	0.524727664	0.854554788	0.01	0.99	0	0	2	1.69E-06	1	1	1	NA	NA	NA	NA
1351289	1206640505	PD9774b	2	154892465	C	G	GALNT13	CCDS2199.1	r.?	-	-	intronic	34	0	0	46	7	15.2173913	0	0	NA	0	0	NA	0.854554788	0	0	0.145445212	1	0	0.854554788	unphased	0.807460301	0.944890032	0.854554788	0.0025	0.9975	0	0	2	3.53E-09	1	1	1	NA	NA	NA	NA
1351289	1206640519	PD9774b	2	155066126	C	G	GALNT13	CCDS2199.1	r.?	-	-	intronic	42	0	0	36	5	13.88888889	241	1	0.414937759	416	58	13.94230769	0.854554788	0	0	0.145445212	1	0	0.854554788	unphased	0.736967735	0.862399632	0.854554788	0.00125	0.9975	0.00125	0	2	1.04E-06	1	3.16E-63	0.701212476	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206640772	PD9774b	2	159449305	A	G	PKP4	CCDS33306.1	r.?	-	-	intronic	43	0	0	57	7	12.28070175	0	0	NA	0	0	NA	0.854554788	0	0	0.145445212	1	0	0.854554788	unphased	0.651634629	0.762542833	0.854554788	0.0025	0.9975	0	0	2	1.66E-08	1	1	1	NA	NA	NA	NA
1351289	1206640810	PD9774b	2	159844052	C	G	TANC1	CCDS42766.1	r.?	-	-	intronic	48	0	0	46	6	13.04347826	0	0	NA	0	0	NA	0.854554788	0	0	0.145445212	1	0	0.854554788	unphased	0.692108829	0.809905742	0.854554788	0.00375	0.99625	0	0	2	1.23E-07	1	1	1	NA	NA	NA	NA
1351289	1206640952	PD9774b	2	161667249	A	G	-	-	-	-	-	-	36	0	0	51	6	11.76470588	0	0	NA	0	0	NA	0.854554788	0	0	0.145445212	1	0	0.854554788	unphased	0.624255022	0.730503218	0.854554788	0.00125	0.99875	0	0	2	2.32E-07	1	1	1	NA	NA	NA	NA
1351289	1206641246	PD9774b	2	165796820	T	G	SLC38A11	CCDS2224.1	r.?	-	-	intronic	39	0	0	33	9	27.27272727	0	0	NA	0	0	NA	0.854554788	0	0	0.145445212	1	0	0.854554788	unphased	1.447136643	1.447136643	1	0	0.99375	0.00625	0	2	6.76E-14	1	1	1	NA	NA	NA	NA
1351289	1206641345	PD9774b	2	166874470	C	G	SCN1A	CCDS33316.1	r.?	-	-	intronic	38	0	0	43	5	11.62790698	0	0	NA	0	0	NA	0.854554788	0	0	0.145445212	1	0	0.854554788	unphased	0.616996243	0.722008994	0.854554788	0.00375	0.99625	0	0	2	2.57E-06	1	1	1	NA	NA	NA	NA
1351289	1206641415	PD9774b	2	167778010	C	G	XIRP2	CCDS42769.1	r.?	-	-	intronic	38	0	0	46	4	8.695652174	0	0	NA	0	0	NA	0.854554788	0	0	0.145445212	1	0	0.854554788	unphased	0.461405886	0.539937161	0.854554788	0.01	0.99	0	0	2	8.62E-05	1	1	1	NA	NA	NA	NA
1351289	1206641433	PD9774b	2	168107997	A	G	XIRP2	CCDS42769.1	r.10184a>g	c.10095A>G	p.Q3365Q	silent	40	0	0	53	9	16.98113208	258	1	0.387596899	220	34	15.45454545	0.854554788	0	0	0.145445212	1	0	0.854554788	unphased	0.901047344	1.054405588	0.854554788	0	0.9975	0.0025	0	2	7.10E-12	1	2.37E-39	0.725618496	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206642419	PD9774b	2	179618704	T	G	TTN	ENST00000342992	r.?	-	-	intronic	33	0	0	78	28	35.8974359	0	0	NA	0	0	NA	1.770709529	1	0	0.229290471	2	0	0.770709529	unphased	2.233654206	1.261445861	1.770709529	0	0.99625	0.00375	0	2	3.57E-44	1	1	1	NA	NA	NA	NA
1351289	1206642596	PD9774b	2	181787060	C	G	-	-	-	-	-	-	43	0	0	51	7	13.7254902	0	0	NA	0	0	NA	1.770709529	1	0	0.229290471	2	0	0.770709529	unphased	0.854044255	1.108127282	0.770709529	0.00125	0.9975	0.00125	0	2	7.46E-09	1	1	1	NA	NA	NA	NA
1351289	1206642735	PD9774b	2	183455327	A	G	-	-	-	-	-	-	28	0	0	63	21	33.33333333	227	0	0	375	110	29.33333333	1.770709529	1	0	0.229290471	2	0	0.770709529	unphased	2.074107477	1.171342585	1.770709529	0	0.99875	0.00125	0	2	1.08E-32	1	3.30E-157	1	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206642995	PD9774b	2	186638364	C	G	FSIP2	ENST00000424728	r.?	-	-	intronic	40	0	0	68	5	7.352941176	0	0	NA	0	0	NA	1.770709529	1	0	0.229290471	2	0	0.770709529	unphased	0.457523708	0.593639615	0.770709529	0.00125	0.99875	0	0	2	2.51E-05	1	1	1	NA	NA	NA	NA
1351289	1206643270	PD9774b	2	190059920	C	G	-	-	-	-	-	-	39	0	0	66	5	7.575757576	0	0	NA	0	0	NA	1.770709529	1	0	0.229290471	2	0	0.770709529	unphased	0.471388063	0.611628694	0.770709529	0.00375	0.99625	0	0	2	2.17E-05	1	1	1	NA	NA	NA	NA
1351289	1206643506	PD9774b	2	192510986	A	G	-	-	-	-	-	-	27	0	0	42	13	30.95238095	0	0	NA	0	0	NA	1.770709529	1	0	0.229290471	2	0	0.770709529	unphased	1.925956943	1.087675258	1.770709529	0	1	0	0	2	2.72E-20	1	1	1	NA	NA	NA	NA
1351289	1206643672	PD9774b	2	194731306	T	G	-	-	-	-	-	-	36	0	0	64	8	12.5	0	0	NA	0	0	NA	1.770709529	1	0	0.229290471	2	0	0.770709529	unphased	0.777790304	1.009187346	0.770709529	0	1	0	0	2	1.35E-09	1	1	1	NA	NA	NA	NA
1351289	1206643748	PD9774b	2	195556359	A	G	-	-	-	-	-	-	30	0	0	51	11	21.56862745	0	0	NA	0	0	NA	1.770709529	1	0	0.229290471	2	0	0.770709529	unphased	1.342069544	1.342069544	1	0.00125	0.9925	0.00625	0	2	1.94E-15	1	1	1	NA	NA	NA	NA
1351289	1206643968	PD9774b	2	197764767	C	G	PGAP1	CCDS2318.1	r.?	-	-	intronic	26	0	0	57	12	21.05263158	0	0	NA	0	0	NA	1.770709529	1	0	0.229290471	2	0	0.770709529	unphased	1.309962617	1.309962617	1	0	1	0	0	2	1.40E-16	1	1	1	NA	NA	NA	NA
1351289	1206644012	PD9774b	2	198237509	T	G	-	-	-	-	-	-	25	0	0	40	5	12.5	0	0	NA	0	0	NA	1.770709529	1	0	0.229290471	2	0	0.770709529	unphased	0.777790304	1.009187346	0.770709529	0.00125	0.9975	0.00125	0	2	1.78E-06	1	1	1	NA	NA	NA	NA
1351289	1206644054	PD9774b	2	198675613	T	G	PLCL1	ENST00000428675	r.?	-	-	intronic	33	0	0	54	6	11.11111111	0	0	NA	0	0	NA	1.770709529	1	0	0.229290471	2	0	0.770709529	unphased	0.691369159	0.897055419	0.770709529	0	1	0	0	2	3.29E-07	1	1	1	NA	NA	NA	NA
1351289	1206644095	PD9774b	2	199176592	C	G	-	-	-	-	-	-	31	0	0	58	14	24.13793103	0	0	NA	0	0	NA	1.770709529	1	0	0.229290471	2	0	0.770709529	unphased	1.501939897	1.501939897	1	0	0.98875	0.01125	0	2	5.04E-20	1	1	1	NA	NA	NA	NA
1351289	1206644291	PD9774b	2	201303033	A	G	SPATS2L	CCDS46483.1	r.?	-	-	intronic	37	0	0	65	16	24.61538462	0	0	NA	0	0	NA	1.770709529	1	0	0.229290471	2	0	0.770709529	unphased	1.531648599	0.864991448	1.770709529	0.0025	0.9975	0	0	2	7.85E-23	1	1	1	NA	NA	NA	NA
1351289	1206644330	PD9774b	2	201631839	T	G	-	-	-	-	-	-	38	0	0	49	4	8.163265306	0	0	NA	0	0	NA	1.770709529	1	0	0.229290471	2	0	0.770709529	unphased	0.507944688	0.659061124	0.770709529	0.00125	0.99875	0	0	2	0.000110643	1	1	1	NA	NA	NA	NA
1351289	1206644451	PD9774b	2	203058600	C	G	ENSG00000182329	ENST00000498697	r.?	-	-	intronic	42	0	0	42	8	19.04761905	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.038402458	1.038402458	1	0	0.9975	0.0025	0	2	3.96E-11	1	1	1	NA	NA	NA	NA
1351289	1206644472	PD9774b	2	203262228	T	G	BMPR2	CCDS33361.1	r.?	-	-	intronic	39	0	0	45	3	6.666666667	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.36344086	0.36344086	1	0.01625	0.98375	0	0	2	0.001516071	1	1	1	NA	NA	NA	NA
1351289	1206644591	PD9774b	2	204409076	T	G	-	-	-	-	-	-	39	0	0	37	3	8.108108108	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.442022668	0.442022668	1	0.01125	0.98875	0	0	2	0.000855237	1	1	1	NA	NA	NA	NA
1351289	1206644645	PD9774b	2	205097469	T	G	-	-	-	-	-	-	36	0	0	52	11	21.15384615	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.153225806	1.153225806	1	0	0.99875	0.00125	0	2	2.44E-15	1	1	1	NA	NA	NA	NA
1351289	1206644669	PD9774b	2	205597320	C	G	PARD3B	CCDS42806.1	r.?	-	-	intronic	31	0	0	48	12	25	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.362903226	1.362903226	1	0	0.99875	0.00125	0	2	1.44E-17	1	1	1	NA	NA	NA	NA
1351289	1206644695	PD9774b	2	205974451	C	G	PARD3B	CCDS42806.1	r.?	-	-	intronic	32	0	0	41	4	9.756097561	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.531864673	0.531864673	1	0.01	0.99	0	0	2	5.46E-05	1	1	1	NA	NA	NA	NA
1351289	1206645664	PD9774b	2	217841724	A	G	-	-	-	-	-	-	25	0	0	51	13	25.49019608	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.389626818	1.389626818	1	0	0.995	0.005	0	2	4.87E-19	1	1	1	NA	NA	NA	NA
1351289	1206646037	PD9774b	2	221891898	C	G	-	-	-	-	-	-	35	0	0	42	10	23.80952381	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.298003072	1.298003072	1	0	0.99625	0.00375	0	2	1.24E-14	1	1	1	NA	NA	NA	NA
1351289	1206646076	PD9774b	2	222170530	A	G	-	-	-	-	-	-	38	0	0	47	8	17.0212766	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.927934111	0.927934111	1	0.00125	0.9975	0.00125	0	2	1.03E-10	1	1	1	NA	NA	NA	NA
1351289	1206646244	PD9774b	2	223958924	A	G	-	-	-	-	-	-	44	0	0	53	4	7.547169811	0	0	NA	0	0	NA	0.724530089	0	0	0.275469911	1	0	0.724530089	unphased	0.390652301	0.539180232	0.724530089	0.01	0.99	0	0	2	0.000150502	1	1	1	NA	NA	NA	NA
1351289	1206646525	PD9774b	2	227644369	C	G	IRS1	CCDS2463.1	r.?	-	-	intronic	35	0	0	39	5	12.82051282	0	0	NA	0	0	NA	0.724530089	0	0	0.275469911	1	0	0.724530089	unphased	0.663608076	0.915915137	0.724530089	0.0025	0.9975	0	0	2	1.56E-06	1	1	1	NA	NA	NA	NA
1351289	1206646706	PD9774b	2	229606660	C	G	-	-	-	-	-	-	26	0	0	51	5	9.803921569	0	0	NA	0	0	NA	1.658749733	1	0	0.341250267	2	0	0.658749733	unphased	0.59905516	0.909382017	0.658749733	0	1	0	0	2	6.06E-06	1	1	1	NA	NA	NA	NA
1351289	1206646772	PD9774b	2	230543380	C	G	DNER	CCDS33390.1	r.?	-	-	intronic	34	0	0	58	17	29.31034483	251	0	0	186	27	14.51612903	1.658749733	1	0	0.341250267	2	0	0.658749733	unphased	1.790968359	1.07970981	1.658749733	0	1	0	0	2	1.24E-25	1	8.26E-31	1	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206646848	PD9774b	2	231530834	C	G	-	-	-	-	-	-	26	0	0	40	4	10	0	0	NA	0	0	NA	1.658749733	1	0	0.341250267	2	0	0.658749733	unphased	0.611036264	0.927569657	0.658749733	0.00125	0.9975	0.00125	0	2	4.95E-05	1	1	1	NA	NA	NA	NA
1351289	1206647027	PD9774b	2	233011435	T	G	DIS3L2	CCDS42834.1	r.?	-	-	intronic	30	0	0	47	10	21.27659574	0	0	NA	0	0	NA	1.658749733	1	0	0.341250267	2	0	0.658749733	unphased	1.300077157	1.300077157	1	0	0.99625	0.00375	0	2	4.27E-14	1	1	1	NA	NA	NA	NA
1351289	1206647212	PD9774b	2	235012719	A	G	-	-	-	-	-	-	32	0	0	62	6	9.677419355	0	0	NA	1	0	0	1.658749733	1	0	0.341250267	2	0	0.658749733	unphased	0.591325416	0.897648055	0.658749733	0.00375	0.99625	0	0	2	7.56E-07	1	1	1	NA	NA	NA	NA
1351289	1206647223	PD9774b	2	235142440	C	G	-	-	-	-	-	-	34	0	0	47	4	8.510638298	0	0	NA	0	0	NA	1.658749733	1	0	0.341250267	2	0	0.658749733	unphased	0.520030863	0.789420985	0.658749733	0.00125	0.99875	0	0	2	9.39E-05	1	1	1	NA	NA	NA	NA
1351289	1206647278	PD9774b	2	235657619	A	G	-	-	-	-	-	-	31	0	0	54	11	20.37037037	0	0	NA	0	0	NA	1.658749733	1	0	0.341250267	2	0	0.658749733	unphased	1.2447035	1.2447035	1	0	0.99625	0.00375	0	2	3.84E-15	1	1	1	NA	NA	NA	NA
1351289	1206647418	PD9774b	2	237385084	A	G	IQCA1	CCDS46549.1	r.?	-	-	intronic	33	0	0	65	6	9.230769231	0	0	NA	0	0	NA	1.658749733	1	0	0.341250267	2	0	0.658749733	unphased	0.564033474	0.856218145	0.658749733	0.00125	0.99875	0	0	2	1.00E-06	1	1	1	NA	NA	NA	NA
1351289	1206647510	PD9774b	2	238813818	T	G	RAMP1	CCDS2522.1	r.?	-	-	intronic	42	0	0	47	7	14.89361702	0	0	NA	0	0	NA	1.658749733	1	0	0.341250267	2	0	0.658749733	unphased	0.91005401	0.91005401	1	0.00125	0.99875	0	0	2	4.12E-09	1	1	1	NA	NA	NA	NA
1351289	1206647969	PD9774b	2	243040192	A	G	-	-	-	-	-	-	33	0	0	43	11	25.58139535	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.39459865	1.39459865	1	0	0.995	0.005	0	2	2.42E-16	1	1	1	NA	NA	NA	NA
1351289	1206648008	PD9774b	20	271382	C	G	C20orf96	CCDS12994.1	r.9g>c	c.?	p.?	5'UTR variant	23	0	0	28	3	10.71428571	0	0	NA	0	0	NA	0.828633896	0	0	0.171366104	1	0	0.828633896	unphased	0.565740728	0.682739062	0.828633896	0	1	0	0	2	0.000372895	1	1	1	NA	NA	NA	NA
1351289	1206648014	PD9774b	20	343947	C	G	-	-	-	-	-	-	29	0	0	39	6	15.38461538	0	0	NA	0	0	NA	0.828633896	0	0	0.171366104	1	0	0.828633896	unphased	0.812345661	0.980343268	0.828633896	0	0.99875	0.00125	0	2	4.43E-08	1	1	1	NA	NA	NA	NA
1351289	1206648115	PD9774b	20	1478883	T	G	-	-	-	-	-	-	28	0	0	46	5	10.86956522	0	0	NA	0	0	NA	0.828633896	0	0	0.171366104	1	0	0.828633896	unphased	0.573939869	0.692633831	0.828633896	0.0025	0.9975	0	0	2	3.61E-06	1	1	1	NA	NA	NA	NA
1351289	1206648409	PD9774b	20	4282510	C	G	-	-	-	-	-	-	27	0	0	43	4	9.302325581	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.600150038	0.600150038	1	0.00375	0.99625	0	0	2	6.60E-05	1	1	1	NA	NA	NA	NA
1351289	1206648424	PD9774b	20	4539964	A	G	-	-	-	-	-	-	34	0	0	58	7	12.06896552	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.778642937	0.778642937	1	0	1	0	0	2	1.88E-08	1	1	1	NA	NA	NA	NA
1351289	1206648441	PD9774b	20	4817268	A	G	-	-	-	-	-	-	37	0	0	52	5	9.615384615	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.620347395	0.620347395	1	0.005	0.995	0	0	2	6.68E-06	1	1	1	NA	NA	NA	NA
1351289	1206648557	PD9774b	20	5941064	C	G	MCM8	CCDS13094.1	r.?	-	-	intronic	30	0	0	67	9	13.43283582	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.866634569	0.866634569	1	0	1	0	0	2	6.43E-11	1	1	1	NA	NA	NA	NA
1351289	1206648598	PD9774b	20	6440340	A	G	-	-	-	-	-	-	38	0	0	52	6	11.53846154	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.744416873	0.744416873	1	0.00375	0.99625	0	0	2	2.61E-07	1	1	1	NA	NA	NA	NA
1351289	1206648756	PD9774b	20	8487338	T	G	PLCB1	CCDS13103.1	r.?	-	-	intronic	27	0	0	52	4	7.692307692	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.496277916	0.496277916	1	0.005	0.995	0	0	2	0.000139698	1	1	1	NA	NA	NA	NA
1351289	1206648895	PD9774b	20	10031696	C	G	ANKRD5	CCDS13108.1	r.?	-	-	intronic	41	0	0	55	11	20	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.290322581	1.290322581	1	0	0.99875	0.00125	0	2	4.77E-15	1	1	1	NA	NA	NA	NA
1351289	1206648912	PD9774b	20	10255885	A	G	SNAP25	CCDS13110.1	r.?	-	-	intronic	29	0	0	50	7	14	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.903225806	0.903225806	1	0.00375	0.99625	0	0	2	6.46E-09	1	1	1	NA	NA	NA	NA
1351289	1206649056	PD9774b	20	12319781	C	G	-	-	-	-	-	-	37	0	0	53	5	9.433962264	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.608642727	0.608642727	1	0.0025	0.9975	0	0	2	7.34E-06	1	1	1	NA	NA	NA	NA
1351289	1206649210	PD9774b	20	14088076	A	G	MACROD2	CCDS13120.2	r.?	-	-	intronic	34	0	0	61	9	14.75409836	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.951877314	0.951877314	1	0	1	0	0	2	2.68E-11	1	1	1	NA	NA	NA	NA
1351289	1206649264	PD9774b	20	14682513	A	G	MACROD2	CCDS13120.2	r.?	-	-	intronic	36	0	0	64	5	7.8125	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.504032258	0.504032258	1	0.0075	0.9925	0	0	2	1.86E-05	1	1	1	NA	NA	NA	NA
1351289	1206649879	PD9774b	20	22525157	A	G	-	-	-	-	-	-	41	0	0	42	7	16.66666667	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.075268817	1.075268817	1	0	1	0	0	2	1.81E-09	1	1	1	NA	NA	NA	NA
1351289	1206649884	PD9774b	20	22632430	A	G	-	-	-	-	-	-	27	0	0	59	6	10.16949153	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.656096227	0.656096227	1	0.005	0.995	0	0	2	5.61E-07	1	1	1	NA	NA	NA	NA
1351289	1206649907	PD9774b	20	23135773	T	G	-	-	-	-	-	-	30	0	0	36	4	11.11111111	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.716845878	0.716845878	1	0.005	0.995	0	0	2	3.24E-05	1	1	1	NA	NA	NA	NA
1351289	1206655225	PD9774b	20	30254724	C	G	BCL2L1	CCDS13189.1	r.?	-	-	intronic	40	0	0	50	5	10	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.64516129	0.64516129	1	0.0075	0.9925	0	0	2	5.49E-06	1	1	1	NA	NA	NA	NA
1351289	1206655533	PD9774b	20	33686669	C	G	-	-	-	-	-	-	24	0	0	53	11	20.75471698	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.339013999	1.339013999	1	0	0.99625	0.00375	0	2	3.07E-15	1	1	1	NA	NA	NA	NA
1351289	1206655887	PD9774b	20	38179610	C	G	-	-	-	-	-	-	31	0	0	50	5	10	0	0	NA	2	0	0	0.790269495	0	0	0.209730505	1	0	0.790269495	unphased	0.52418824	0.663303143	0.790269495	0	1	0	0	2	5.49E-06	1	1	1	NA	NA	NA	NA
1351289	1206655945	PD9774b	20	39050887	C	G	-	-	-	-	-	-	34	0	0	51	6	11.76470588	0	0	NA	0	0	NA	0.790269495	0	0	0.209730505	1	0	0.790269495	unphased	0.616692047	0.780356639	0.790269495	0	1	0	0	2	2.32E-07	1	1	1	NA	NA	NA	NA
1351289	1206656131	PD9774b	20	42618064	A	G	TOX2	CCDS42875.1	r.?	-	-	intronic	27	0	0	60	9	15	0	0	NA	0	0	NA	0.790269495	0	0	0.209730505	1	0	0.790269495	unphased	0.78628236	0.994954715	0.790269495	0.00125	0.99875	0	0	2	2.29E-11	1	1	1	NA	NA	NA	NA
1351289	1206657119	PD9774b	20	52931298	C	G	-	-	-	-	-	-	26	0	0	54	4	7.407407407	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.477897252	0.477897252	1	0.00625	0.99375	0	0	2	0.000161898	1	1	1	NA	NA	NA	NA
1351289	1206657173	PD9774b	20	53463694	C	G	-	-	-	-	-	-	40	0	0	67	5	7.462686567	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.481463649	0.481463649	1	0.01	0.99	0	0	2	2.33E-05	1	1	1	NA	NA	NA	NA
1351289	1206657245	PD9774b	20	54493541	T	G	-	-	-	-	-	-	35	0	0	57	5	8.771929825	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.565930956	0.565930956	1	0.01125	0.98875	0	0	2	1.05E-05	1	1	1	NA	NA	NA	NA
1351289	1206657284	PD9774b	20	55006484	A	G	CASS4	CCDS33492.1	r.?	-	-	intronic	34	0	0	65	12	18.46153846	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.191066998	1.191066998	1	0	0.99875	0.00125	0	2	7.70E-16	1	1	1	NA	NA	NA	NA
1351289	1206657505	PD9774b	20	57910905	C	G	-	-	-	-	-	-	36	0	0	68	11	16.17647059	0	0	NA	0	0	NA	1.438482126	1	0	0.561517874	1	1	0.438482126	unphased	0.95280949	0.95280949	1	0	0.99875	0.00125	0	2	5.76E-14	1	1	1	NA	NA	NA	NA
1351289	1206657599	PD9774b	20	59260759	C	G	ENSG00000237240	ENST00000456299	r.?	-	-	intronic	39	0	0	59	5	8.474576271	0	0	NA	0	0	NA	1.438482126	1	0	0.561517874	1	1	0.438482126	unphased	0.499160596	1.138382996	0.438482126	0	0.99875	0.00125	0	2	1.25E-05	1	1	1	NA	NA	NA	NA
1351289	1206672497	PD9774b	21	15480521	C	G	LIPI	CCDS13564.1	r.?	-	-	downstream	38	0	0	45	8	17.77777778	0	0	NA	0	0	NA	2.499191854	1	1	0.500808146	2	1	0.499191854	unphased	1.235698623	1.235698623	1	0	0.9975	0.0025	0	2	7.14E-11	1	1	1	NA	NA	NA	NA
1351289	1206672501	PD9774b	21	15534581	A	G	LIPI	CCDS13564.1	r.?	-	-	intronic	35	0	0	52	13	25	0	0	NA	0	0	NA	2.499191854	1	1	0.500808146	2	1	0.499191854	unphased	1.737701189	1.159091937	1.499191854	0	1	0	0	2	6.47E-19	1	1	1	NA	NA	NA	NA
1351289	1206672753	PD9774b	21	18262751	A	G	-	-	-	-	-	-	37	0	0	56	6	10.71428571	0	0	NA	0	0	NA	2.499191854	1	1	0.500808146	2	1	0.499191854	unphased	0.744729081	0.744729081	1	0.00125	0.99875	0	0	2	4.09E-07	1	1	1	NA	NA	NA	NA
1351289	1206672860	PD9774b	21	19172538	C	G	C21orf91	CCDS42907.1	r.?	-	-	intronic	31	0	0	66	7	10.60606061	0	0	NA	0	0	NA	2.499191854	1	1	0.500808146	2	1	0.499191854	unphased	0.737206565	0.737206565	1	0.0025	0.9975	0	0	2	4.70E-08	1	1	1	NA	NA	NA	NA
1351289	1206672981	PD9774b	21	20388238	C	G	-	-	-	-	-	-	35	0	0	71	5	7.042253521	0	0	NA	0	0	NA	2.499191854	1	1	0.500808146	2	1	0.499191854	unphased	0.489493293	0.980571476	0.499191854	0.0025	0.99625	0.00125	0	2	3.09E-05	1	1	1	NA	NA	NA	NA
1351289	1206673045	PD9774b	21	21178491	C	G	-	-	-	-	-	-	37	0	0	54	5	9.259259259	0	0	NA	0	0	NA	2.499191854	1	1	0.500808146	2	1	0.499191854	unphased	0.643593033	1.289269903	0.499191854	0	0.99875	0.00125	0	2	8.06E-06	1	1	1	NA	NA	NA	NA
1351289	1206673125	PD9774b	21	21936514	A	G	-	-	-	-	-	-	46	0	0	71	14	19.71830986	0	0	NA	0	0	NA	2.499191854	1	1	0.500808146	2	1	0.499191854	unphased	1.37058122	1.37058122	1	0.00125	0.9925	0.00625	0	2	1.13E-18	1	1	1	NA	NA	NA	NA
1351289	1206673478	PD9774b	21	25151340	A	G	-	-	-	-	-	-	42	0	0	73	6	8.219178082	0	0	NA	0	0	NA	2.499191854	1	1	0.500808146	2	1	0.499191854	unphased	0.571299021	1.144447805	0.499191854	0.00125	0.99875	0	0	2	2.00E-06	1	1	1	NA	NA	NA	NA
1351289	1206673626	PD9774b	21	26608660	A	G	-	-	-	-	-	-	29	0	0	65	15	23.07692308	0	0	NA	0	0	NA	1.797718639	1	0	0.202281361	1	1	0.797718639	unphased	1.442153433	1.442153433	1	0	0.99625	0.00375	0	2	5.00E-21	1	1	1	NA	NA	NA	NA
1351289	1206673809	PD9774b	21	28929872	C	G	-	-	-	-	-	-	38	0	0	42	6	14.28571429	0	0	NA	0	0	NA	1.797718639	1	0	0.202281361	1	1	0.797718639	unphased	0.892761649	0.892761649	1	0	0.99875	0.00125	0	2	7.02E-08	1	1	1	NA	NA	NA	NA
1351289	1206673910	PD9774b	21	29797352	A	G	-	-	-	-	-	-	42	0	0	50	11	22	0	0	NA	0	0	NA	1.797718639	1	0	0.202281361	1	1	0.797718639	unphased	1.374852939	1.374852939	1	0.00125	0.99375	0.005	0	2	1.52E-15	1	1	1	NA	NA	NA	NA
1351289	1206673938	PD9774b	21	30045103	C	G	-	-	-	-	-	-	38	0	0	63	4	6.349206349	0	0	NA	0	0	NA	1.797718639	1	0	0.202281361	1	1	0.797718639	unphased	0.396782955	0.497397122	0.797718639	0.0125	0.9875	0	0	2	0.000294233	1	1	1	NA	NA	NA	NA
1351289	1206674050	PD9774b	21	31652502	C	G	KRTAP24-1	CCDS42915.1	r.?	-	-	downstream	31	0	0	55	5	9.090909091	0	0	NA	0	0	NA	1.797718639	1	0	0.202281361	1	1	0.797718639	unphased	0.568121049	0.712182243	0.797718639	0.00375	0.99625	0	0	2	8.83E-06	1	1	1	NA	NA	NA	NA
1351289	1206674283	PD9774b	21	33636520	T	G	C21orf45	CCDS13611.1	r.?	-	-	downstream	36	0	0	52	4	7.692307692	0	0	NA	0	0	NA	1.797718639	1	0	0.202281361	1	1	0.797718639	unphased	0.480717811	0.602615744	0.797718639	0.00625	0.99375	0	0	2	0.000139698	1	1	1	NA	NA	NA	NA
1351289	1206674347	PD9774b	21	33828987	C	G	C21orf63	CCDS13614.1	r.?	-	-	intronic	28	0	0	42	11	26.19047619	0	0	NA	0	0	NA	1.797718639	1	0	0.202281361	1	1	0.797718639	unphased	1.63672969	1.63672969	1	0	0.99125	0.00875	0	2	1.81E-16	1	1	1	NA	NA	NA	NA
1351289	1206674360	PD9774b	21	33924124	A	G	-	-	-	-	-	-	32	0	0	48	6	12.5	0	0	NA	0	0	NA	1.797718639	1	0	0.202281361	1	1	0.797718639	unphased	0.781166443	0.979250584	0.797718639	0	0.99875	0.00125	0	2	1.60E-07	1	1	1	NA	NA	NA	NA
1351289	1206674545	PD9774b	21	35588930	C	G	-	-	-	-	-	-	29	0	0	61	16	26.2295082	0	0	NA	0	0	NA	1.797718639	1	0	0.202281361	1	1	0.797718639	unphased	1.639168929	1.639168929	1	0	0.97375	0.02625	0	2	2.50E-23	1	1	1	NA	NA	NA	NA
1351289	1206674616	PD9774b	21	36579039	T	G	-	-	-	-	-	-	33	0	0	40	6	15	2	0	0	0	0	NA	2.608470272	1	1	0.391529728	2	1	0.608470272	unphased	1.059012476	1.059012476	1	0	0.9975	0.0025	0	2	5.18E-08	1	1	1	NA	NA	NA	NA
1351289	1206674745	PD9774b	21	37933182	C	G	CLDN14	CCDS13645.1	r.?	-	-	intronic	30	0	0	71	17	23.94366197	0	0	NA	0	0	NA	2.608470272	1	1	0.391529728	2	1	0.608470272	unphased	1.69044245	1.050962818	1.608470272	0	0.99875	0.00125	0	2	6.12E-24	1	1	1	NA	NA	NA	NA
1351289	1206675030	PD9774b	21	40961841	A	G	B3GALT5	CCDS13667.1	r.?	-	-	intronic	41	0	0	66	10	15.15151515	0	0	NA	0	0	NA	2.608470272	1	1	0.391529728	2	1	0.608470272	unphased	1.069709572	1.069709572	1	0.00125	0.9975	0.00125	0	2	1.60E-12	1	1	1	NA	NA	NA	NA
1351289	1206675132	PD9774b	21	41900934	A	G	DSCAM	CCDS42929.1	r.?	-	-	intronic	31	0	0	47	5	10.63829787	0	0	NA	0	0	NA	2.608470272	1	1	0.391529728	2	1	0.608470272	unphased	0.751072678	1.234362158	0.608470272	0.00125	0.99625	0.0025	0	2	4.02E-06	1	1	1	NA	NA	NA	NA
1351289	1206675138	PD9774b	21	41966967	C	G	DSCAM	CCDS42929.1	r.?	-	-	intronic	28	0	0	44	7	15.90909091	0	0	NA	0	0	NA	2.608470272	1	1	0.391529728	2	1	0.608470272	unphased	1.123195051	1.123195051	1	0.00125	0.99625	0.0025	0	2	2.55E-09	1	1	1	NA	NA	NA	NA
1351289	1206675139	PD9774b	21	41976031	C	G	DSCAM	CCDS42929.1	r.?	-	-	intronic	32	0	0	59	5	8.474576271	0	0	NA	0	0	NA	2.608470272	1	1	0.391529728	2	1	0.608470272	unphased	0.598312134	0.983305448	0.608470272	0	0.9975	0.0025	0	2	1.25E-05	1	1	1	NA	NA	NA	NA
1351289	1206675162	PD9774b	21	42164737	C	G	DSCAM	CCDS42929.1	r.?	-	-	intronic	31	0	0	48	9	18.75	0	0	NA	0	0	NA	2.608470272	1	1	0.391529728	2	1	0.608470272	unphased	1.323765595	1.323765595	1	0	0.995	0.005	0	2	2.75E-12	1	1	1	NA	NA	NA	NA
1351289	1206675177	PD9774b	21	42288675	C	G	-	-	-	-	-	-	37	0	0	67	17	25.37313433	0	0	NA	0	0	NA	2.608470272	1	1	0.391529728	2	1	0.608470272	unphased	1.791364388	1.113706867	1.608470272	0	0.99875	0.00125	0	2	2.03E-24	1	1	1	NA	NA	NA	NA
1351289	1206675478	PD9774b	21	45288582	C	G	AGPAT3	CCDS13703.1	r.?	-	-	intronic	26	0	0	52	7	13.46153846	0	0	NA	0	0	NA	0.13073868	0	0	0.86926132	1	0	0.13073868	unphased	0.616855021	0.616855021	1	0.005	0.995	0	0	2	8.58E-09	1	1	1	NA	NA	NA	NA
1351289	1206675582	PD9774b	21	46718799	C	G	-	-	-	-	-	-	34	0	0	48	10	20.83333333	0	0	NA	0	0	NA	0.13073868	0	0	0.86926132	1	0	0.13073868	unphased	0.95465658	0.95465658	1	0	0.99875	0.00125	0	2	5.37E-14	1	1	1	NA	NA	NA	NA
1351289	1206676688	PD9774b	22	17173429	A	G	-	-	-	-	-	-	42	0	0	46	7	15.2173913	0	0	NA	0	0	NA	0.677534538	0	0	0.322465462	1	0	0.677534538	unphased	0.780522437	1.152003909	0.677534538	0	1	0	0	2	3.53E-09	1	1	1	NA	NA	NA	NA
1351289	1206677240	PD9774b	22	18368304	T	G	ENSG00000093100	CCDS46659.1	r.?	-	-	intronic	38	0	0	50	5	10	0	0	NA	0	0	NA	0.677534538	0	0	0.322465462	1	0	0.677534538	unphased	0.512914744	0.75703114	0.677534538	0	1	0	0	2	5.49E-06	1	1	1	NA	NA	NA	NA
1351289	1206677712	PD9774b	22	21373300	C	G	P2RX6	CCDS13788.2	r.?	-	-	intronic	39	0	0	60	4	6.666666667	0	0	NA	0	0	NA	0.677534538	0	0	0.322465462	1	0	0.677534538	unphased	0.341943163	0.504687427	0.677534538	0.0075	0.9925	0	0	2	0.000243755	1	1	1	NA	NA	NA	NA
1351289	1206678846	PD9774b	22	31408012	T	G	-	-	-	-	-	-	27	0	0	31	3	9.677419355	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.624349636	0.624349636	1	0.00375	0.99625	0	0	2	0.000505952	1	1	1	NA	NA	NA	NA
1351289	1206679051	PD9774b	22	33291584	C	G	SYN3	CCDS13908.1	r.?	-	-	intronic	35	0	0	55	4	7.272727273	0	0	NA	0	0	NA	0.736598606	0	0	0.263401394	1	0	0.736598606	unphased	0.377324473	0.512252494	0.736598606	0.00625	0.99375	0	0	2	0.000173903	1	1	1	NA	NA	NA	NA
1351289	1206679298	PD9774b	22	36338410	C	G	RBM9	CCDS43013.1	r.?	-	-	intronic	34	0	0	58	6	10.34482759	0	0	NA	0	0	NA	0.736598606	0	0	0.263401394	1	0	0.736598606	unphased	0.536711535	0.728635014	0.736598606	0.0025	0.9975	0	0	2	5.06E-07	1	1	1	NA	NA	NA	NA
1351289	1206679433	PD9774b	22	37993499	C	G	-	-	-	-	-	-	21	0	0	53	15	28.30188679	0	0	NA	0	0	NA	0.736598606	0	0	0.263401394	1	0	0.736598606	unphased	1.468361748	1.468361748	1	0	0.9925	0.0075	0	2	1.60E-22	1	1	1	NA	NA	NA	NA
1351289	1206679519	PD9774b	22	38706703	T	G	CSNK1E	CCDS13970.1	r.?	-	-	intronic	26	0	0	44	9	20.45454545	0	0	NA	0	0	NA	0.736598606	0	0	0.263401394	1	0	0.736598606	unphased	1.061225081	1.061225081	1	0	1	0	0	2	1.18E-12	1	1	1	NA	NA	NA	NA
1351289	1206679828	PD9774b	22	41964752	C	G	CSDC2	CCDS14019.1	r.?	-	-	intronic	28	0	0	43	4	9.302325581	0	0	NA	0	0	NA	0.736598606	0	0	0.263401394	1	0	0.736598606	unphased	0.482624326	0.655206679	0.736598606	0.00625	0.99375	0	0	2	6.60E-05	1	1	1	NA	NA	NA	NA
1351289	1206679971	PD9774b	22	43195563	C	G	ARFGAP3	CCDS14042.1	r.?	-	-	intronic	24	0	0	46	8	17.39130435	0	0	NA	0	0	NA	0.736598606	0	0	0.263401394	1	0	0.736598606	unphased	0.902297654	0.902297654	1	0	1	0	0	2	8.61E-11	1	1	1	NA	NA	NA	NA
1351289	1206680279	PD9774b	22	46443299	C	G	C22orf26	CCDS14071.1	r.?	-	-	downstream	28	0	0	45	12	26.66666667	223	0	0	23	3	13.04347826	1.16591663	1	0	0.83408337	2	0	0.16591663	unphased	1.498007875	1.498007875	1	0	0.9975	0.0025	0	2	6.03E-18	1	0.000205387	1	NA	NA	NA	NA
1351289	1206680666	PD9774b	22	50231460	A	G	-	-	-	-	-	-	32	0	0	52	13	25	0	0	NA	0	0	NA	1.16591663	1	0	0.83408337	2	0	0.16591663	unphased	1.404382383	1.404382383	1	0	0.99125	0.00875	0	2	6.47E-19	1	1	1	NA	NA	NA	NA
1351289	1206680695	PD9774b	22	50485290	A	G	TTLL8	CCDS46731.1	r.?	-	-	intronic	34	0	0	22	6	27.27272727	30	0	0	3	0	0	1.16591663	1	0	0.83408337	2	0	0.16591663	unphased	1.532053509	1.532053509	1	0.00125	0.99125	0.0075	0	2	1.09E-09	1	1	1	NA	NA	NA	NA
1351289	1206680812	PD9774b	22	51119116	C	G	ENSG00000251322	ENST00000503869	r.?	-	-	intronic	25	0	0	16	3	18.75	0	0	NA	0	0	NA	1.16591663	1	0	0.83408337	2	0	0.16591663	unphased	1.053286787	1.053286787	1	0.0025	0.99375	0.00375	0	2	6.67E-05	1	1	1	NA	NA	NA	NA
1351289	1206681057	PD9774b	3	1587450	C	G	-	-	-	-	-	-	44	0	0	53	5	9.433962264	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	0.499238809	0.59410667	0.840318471	0.005	0.995	0	0	2	7.34E-06	1	1	1	NA	NA	NA	NA
1351289	1206681532	PD9774b	3	8082417	C	G	-	-	-	-	-	-	30	0	0	44	6	13.63636364	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	0.721627006	0.858754187	0.840318471	0.0025	0.9975	0	0	2	9.37E-08	1	1	1	NA	NA	NA	NA
1351289	1206681533	PD9774b	3	8103186	A	G	-	-	-	-	-	-	36	0	0	34	7	20.58823529	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	1.089515283	1.089515283	1	0	1	0	0	2	3.73E-10	1	1	1	NA	NA	NA	NA
1351289	1206681540	PD9774b	3	8152113	C	G	-	-	-	-	-	-	34	0	0	47	8	17.0212766	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	0.900754276	1.07192012	0.840318471	0	1	0	0	2	1.03E-10	1	1	1	NA	NA	NA	NA
1351289	1206681964	PD9774b	3	13206061	T	G	-	-	-	-	-	-	32	0	0	43	11	25.58139535	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	1.353749886	1.353749886	1	0	0.99625	0.00375	0	2	2.42E-16	1	1	1	NA	NA	NA	NA
1351289	1206682296	PD9774b	3	18211673	C	G	AC139618.1	ENST00000448265	r.?	-	-	intronic	41	0	0	62	7	11.29032258	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	0.597476123	0.711011531	0.840318471	0.0025	0.9975	0	0	2	3.02E-08	1	1	1	NA	NA	NA	NA
1351289	1206682583	PD9774b	3	21995468	T	G	-	-	-	-	-	-	44	0	0	62	8	12.90322581	117	0	0	79	6	7.594936709	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	0.682829855	0.812584607	0.840318471	0.00375	0.99625	0	0	2	1.04E-09	1	3.18E-06	1	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206682602	PD9774b	3	22277996	A	G	-	-	-	-	-	-	40	0	0	53	6	11.32075472	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	0.599086571	0.712928005	0.840318471	0.00375	0.99625	0	0	2	2.93E-07	1	1	1	NA	NA	NA	NA
1351289	1206682689	PD9774b	3	23610495	A	G	UBE2E2	CCDS2637.1	r.?	-	-	intronic	45	0	0	49	12	24.48979592	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	1.295983194	1.295983194	1	0.00125	0.995	0.00375	0	2	1.90E-17	1	1	1	NA	NA	NA	NA
1351289	1206682749	PD9774b	3	24248122	A	G	THRB	CCDS2641.1	r.?	-	-	intronic	42	0	0	39	6	15.38461538	0	0	NA	1	0	0	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	0.814143288	0.968850878	0.840318471	0.00375	0.995	0.00125	0	2	4.43E-08	1	1	1	NA	NA	NA	NA
1351289	1206682906	PD9774b	3	26739306	A	G	LRRC3B	CCDS2644.1	r.?	-	-	intronic	32	0	0	51	4	7.843137255	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	0.415053441	0.493923977	0.840318471	0.00875	0.99125	0	0	2	0.000129466	1	1	1	NA	NA	NA	NA
1351289	1206682978	PD9774b	3	27781826	T	G	-	-	-	-	-	-	45	0	0	49	7	14.28571429	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	0.755990196	0.899647244	0.840318471	0.00125	0.9975	0.00125	0	2	5.58E-09	1	1	1	NA	NA	NA	NA
1351289	1206683123	PD9774b	3	29768059	C	G	RBMS3	CCDS33725.1	r.?	-	-	intronic	28	0	0	43	9	20.93023256	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	1.107613543	1.107613543	1	0	0.99875	0.00125	0	2	9.45E-13	1	1	1	NA	NA	NA	NA
1351289	1206683309	PD9774b	3	32659661	C	G	-	-	-	-	-	-	36	0	0	58	4	6.896551724	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	0.364960784	0.434312463	0.840318471	0.01625	0.98375	0	0	2	0.000213772	1	1	1	NA	NA	NA	NA
1351289	1206683393	PD9774b	3	33341524	T	G	FBXL2	CCDS2658.1	r.?	-	-	intronic	27	0	0	39	4	10.25641026	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	0.542762192	0.645900585	0.840318471	0.005	0.99375	0.00125	0	2	4.47E-05	1	1	1	NA	NA	NA	NA
1351289	1206683466	PD9774b	3	34416435	C	G	-	-	-	-	-	-	51	0	0	54	11	20.37037037	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	1.077986021	1.077986021	1	0.00125	0.9975	0.00125	0	2	3.84E-15	1	1	1	NA	NA	NA	NA
1351289	1206683496	PD9774b	3	34853110	T	G	-	-	-	-	-	-	28	0	0	63	10	15.87301587	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	0.839989107	0.999608049	0.840318471	0.00125	0.9975	0.00125	0	2	9.81E-13	1	1	1	NA	NA	NA	NA
1351289	1206683648	PD9774b	3	37225180	C	G	-	-	-	-	-	-	39	0	0	57	6	10.52631579	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	0.557045408	0.662897969	0.840318471	0.00375	0.99625	0	0	2	4.56E-07	1	1	1	NA	NA	NA	NA
1351289	1206683776	PD9774b	3	39320215	T	G	CX3CR1	CCDS43069.1	r.?	-	-	intronic	27	0	0	40	5	12.5	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	0.661491422	0.787191338	0.840318471	0	1	0	0	2	1.78E-06	1	1	1	NA	NA	NA	NA
1351289	1206683812	PD9774b	3	39763683	C	G	-	-	-	-	-	-	31	0	0	42	5	11.9047619	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	0.62999183	0.749706037	0.840318471	0.00125	0.99875	0	0	2	2.28E-06	1	1	1	NA	NA	NA	NA
1351289	1206683939	PD9774b	3	41613579	T	G	ULK4	CCDS43071.1	r.?	-	-	intronic	46	0	0	45	6	13.33333333	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	0.70559085	0.839670761	0.840318471	0.00125	0.9975	0.00125	0	2	1.08E-07	1	1	1	NA	NA	NA	NA
1351289	1206683960	PD9774b	3	41966160	C	G	ULK4	CCDS43071.1	r.?	-	-	intronic	35	0	0	53	6	11.32075472	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	0.599086571	0.712928005	0.840318471	0.00375	0.99625	0	0	2	2.93E-07	1	1	1	NA	NA	NA	NA
1351289	1206683984	PD9774b	3	42291153	T	G	-	-	-	-	-	-	28	0	0	46	7	15.2173913	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	0.805293905	0.95831989	0.840318471	0.00125	0.99875	0	0	2	3.53E-09	1	1	1	NA	NA	NA	NA
1351289	1206684609	PD9774b	3	50133491	A	G	RBM5	CCDS2810.1	r.?	-	-	intronic	38	0	0	47	11	23.40425532	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	1.23853713	1.23853713	1	0.00125	0.99625	0.0025	0	2	7.21E-16	1	1	1	NA	NA	NA	NA
1351289	1206684886	PD9774b	3	53634046	C	G	CACNA1D	CCDS2872.1	r.?	-	-	intronic	39	0	0	49	6	12.24489796	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	0.647991597	0.771126209	0.840318471	0.00375	0.99625	0	0	2	1.82E-07	1	1	1	NA	NA	NA	NA
1351289	1206685283	PD9774b	3	59120435	A	G	-	-	-	-	-	-	35	0	0	50	6	12	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	0.635031765	0.755703685	0.840318471	0.00375	0.995	0.00125	0	2	2.06E-07	1	1	1	NA	NA	NA	NA
1351289	1206685344	PD9774b	3	60198350	A	G	FHIT	CCDS2894.1	r.?	-	-	intronic	31	0	0	42	5	11.9047619	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	0.62999183	0.749706037	0.840318471	0.0025	0.9975	0	0	2	2.28E-06	1	1	1	NA	NA	NA	NA
1351289	1206685471	PD9774b	3	61692344	A	G	PTPRG	CCDS2895.1	r.?	-	-	intronic	35	0	0	31	7	22.58064516	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	1.194952246	1.194952246	1	0	0.99625	0.00375	0	2	1.85E-10	1	1	1	NA	NA	NA	NA
1351289	1206685823	PD9774b	3	66882930	A	G	-	-	-	-	-	-	31	0	0	55	6	10.90909091	1	0	0	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	0.577301604	0.68700335	0.840318471	0	1	0	0	2	3.67E-07	1	1	1	NA	NA	NA	NA
1351289	1206685927	PD9774b	3	69019455	C	G	C3orf64	CCDS2908.1	r.?	-	-	downstream	22	0	0	52	9	17.30769231	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	0.915911199	0.915911199	1	0.0025	0.9975	0	0	2	5.92E-12	1	1	1	NA	NA	NA	NA
1351289	1206686014	PD9774b	3	70150446	C	G	-	-	-	-	-	-	33	0	0	47	5	10.63829787	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	0.562971423	0.669950075	0.840318471	0.00375	0.99625	0	0	2	4.02E-06	1	1	1	NA	NA	NA	NA
1351289	1206686027	PD9774b	3	70254400	C	G	-	-	-	-	-	-	26	0	0	45	4	8.888888889	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	0.4703939	0.559780507	0.840318471	0.00625	0.99375	0	0	2	7.91E-05	1	1	1	NA	NA	NA	NA
1351289	1206686086	PD9774b	3	70867376	C	G	-	-	-	-	-	-	41	0	0	55	13	23.63636364	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	1.250820143	1.250820143	1	0	0.99875	0.00125	0	2	1.46E-18	1	1	1	NA	NA	NA	NA
1351289	1206689162	PD9774b	3	78043955	T	G	-	-	-	-	-	-	32	0	0	40	4	10	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	0.529193137	0.629753071	0.840318471	0.0025	0.9975	0	0	2	4.95E-05	1	1	1	NA	NA	NA	NA
1351289	1206689398	PD9774b	3	81995071	A	G	-	-	-	-	-	-	40	0	0	48	6	12.5	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	0.661491422	0.787191338	0.840318471	0	1	0	0	2	1.60E-07	1	1	1	NA	NA	NA	NA
1351289	1206689547	PD9774b	3	84374233	A	G	-	-	-	-	-	-	36	0	0	42	7	16.66666667	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	0.881988562	1.049588451	0.840318471	0.0025	0.9975	0	0	2	1.81E-09	1	1	1	NA	NA	NA	NA
1351289	1206689632	PD9774b	3	85103284	C	G	CADM2	ENST00000383699	r.?	-	-	intronic	40	0	0	46	4	8.695652174	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	0.460167946	0.547611366	0.840318471	0.0075	0.9925	0	0	2	8.62E-05	1	1	1	NA	NA	NA	NA
1351289	1206689796	PD9774b	3	87445274	C	G	-	-	-	-	-	-	40	0	0	62	9	14.51612903	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.936524454	0.936524454	1	0.0025	0.99625	0.00125	0	2	3.12E-11	1	1	1	NA	NA	NA	NA
1351289	1206690168	PD9774b	3	90421565	C	G	-	-	-	-	-	-	20	0	0	52	7	13.46153846	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.868486352	0.868486352	1	0	1	0	0	2	8.58E-09	1	1	1	NA	NA	NA	NA
1351289	1206690595	PD9774b	3	94123101	A	G	-	-	-	-	-	-	26	0	0	49	4	8.163265306	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.526662278	0.526662278	1	0.00875	0.99125	0	0	2	0.000110643	1	1	1	NA	NA	NA	NA
1351289	1206690625	PD9774b	3	94384017	A	G	-	-	-	-	-	-	33	0	0	59	7	11.86440678	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.765445599	0.765445599	1	0.00125	0.99875	0	0	2	2.12E-08	1	1	1	NA	NA	NA	NA
1351289	1206690797	PD9774b	3	96449674	A	G	-	-	-	-	-	-	23	0	0	65	8	12.30769231	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.794044665	0.794044665	1	0.0025	0.9975	0	0	2	1.53E-09	1	1	1	NA	NA	NA	NA
1351289	1206690830	PD9774b	3	96893624	A	G	EPHA6	CCDS46876.1	r.?	-	-	intronic	33	0	0	57	10	17.54385965	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.131861913	1.131861913	1	0	0.99875	0.00125	0	2	3.40E-13	1	1	1	NA	NA	NA	NA
1351289	1206690995	PD9774b	3	99060027	C	G	-	-	-	-	-	-	35	0	0	57	8	14.03508772	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.90548953	0.90548953	1	0.00125	0.99875	0	0	2	5.19E-10	1	1	1	NA	NA	NA	NA
1351289	1206690998	PD9774b	3	99208546	T	G	-	-	-	-	-	-	35	0	0	55	6	10.90909091	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.703812317	0.703812317	1	0.005	0.995	0	0	2	3.67E-07	1	1	1	NA	NA	NA	NA
1351289	1206691276	PD9774b	3	103083022	A	G	-	-	-	-	-	-	34	0	0	47	4	8.510638298	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.549073439	0.549073439	1	0.005	0.995	0	0	2	9.39E-05	1	1	1	NA	NA	NA	NA
1351289	1206691375	PD9774b	3	104178329	T	G	-	-	-	-	-	-	30	0	0	55	6	10.90909091	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.703812317	0.703812317	1	0.0025	0.9975	0	0	2	3.67E-07	1	1	1	NA	NA	NA	NA
1351289	1206691428	PD9774b	3	104880509	A	G	-	-	-	-	-	-	38	0	0	42	7	16.66666667	2	0	0	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.075268817	1.075268817	1	0.00125	0.99875	0	0	2	1.81E-09	1	1	1	NA	NA	NA	NA
1351289	1206691813	PD9774b	3	109603191	A	G	-	-	-	-	-	-	37	0	0	44	6	13.63636364	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	0.757055511	0.757055511	1	0.0025	0.9975	0	0	2	9.37E-08	1	1	1	NA	NA	NA	NA
1351289	1206691836	PD9774b	3	109993963	C	G	-	-	-	-	-	-	34	0	0	49	7	14.28571429	0	0	NA	1	0	0	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	0.793105773	0.793105773	1	0.00125	0.99875	0	0	2	5.58E-09	1	1	1	NA	NA	NA	NA
1351289	1206692041	PD9774b	3	112672627	A	G	CD200R1	CCDS2970.1	r.?	-	-	intronic	35	0	0	51	9	17.64705882	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	0.979718896	0.979718896	1	0.00125	0.9975	0.00125	0	2	4.92E-12	1	1	1	NA	NA	NA	NA
1351289	1206692241	PD9774b	3	115301809	T	G	-	-	-	-	-	-	28	0	0	55	10	18.18181818	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	1.009407347	1.009407347	1	0.00125	0.99875	0	0	2	2.33E-13	1	1	1	NA	NA	NA	NA
1351289	1206692753	PD9774b	3	122136054	C	G	KPNA1	CCDS3013.1	r.?	-	-	downstream	38	0	0	41	6	14.63414634	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	0.812449816	0.812449816	1	0	1	0	0	2	6.05E-08	1	1	1	NA	NA	NA	NA
1351289	1206692927	PD9774b	3	124799784	A	G	SLC12A8	CCDS43143.1	r.?	-	-	downstream	34	0	0	38	4	10.52631579	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	0.584393727	0.584393727	1	0.00375	0.99625	0	0	2	4.03E-05	1	1	1	NA	NA	NA	NA
1351289	1206692953	PD9774b	3	125160742	C	G	SNX4	CCDS3032.1	r.?	-	-	downstream	37	0	0	47	4	8.510638298	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	0.472488546	0.472488546	1	0.00625	0.99375	0	0	2	9.39E-05	1	1	1	NA	NA	NA	NA
1351289	1206692981	PD9774b	3	125406680	C	G	-	-	-	-	-	-	34	0	0	42	11	26.19047619	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	1.45402725	1.45402725	1	0	0.99375	0.00625	0	2	1.81E-16	1	1	1	NA	NA	NA	NA
1351289	1206693226	PD9774b	3	128427702	A	G	-	-	-	-	-	-	36	0	0	44	12	27.27272727	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	1.514111021	1.514111021	1	0	0.99	0.01	0	2	4.44E-18	1	1	1	NA	NA	NA	NA
1351289	1206693599	PD9774b	3	132904893	T	G	TMEM108	CCDS33858.1	r.?	-	-	intronic	32	0	0	55	5	9.090909091	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	0.504703674	0.504703674	1	0.0125	0.9875	0	0	2	8.83E-06	1	1	1	NA	NA	NA	NA
1351289	1206693645	PD9774b	3	133591625	A	G	RAB6B	CCDS3082.1	r.?	-	-	intronic	36	0	0	56	5	8.928571429	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	0.495691108	0.495691108	1	0.0125	0.9875	0	0	2	9.65E-06	1	1	1	NA	NA	NA	NA
1351289	1206693754	PD9774b	3	135334394	C	G	-	-	-	-	-	-	34	0	0	47	9	19.14893617	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	1.063099228	1.063099228	1	0.00125	0.9975	0.00125	0	2	2.24E-12	1	1	1	NA	NA	NA	NA
1351289	1206693843	PD9774b	3	136668049	C	G	NCK1	CCDS3092.1	r.?	-	-	downstream	28	0	0	46	13	28.26086957	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	1.568970116	1.568970116	1	0	0.98125	0.01875	0	2	1.07E-19	1	1	1	NA	NA	NA	NA
1351289	1206694364	PD9774b	3	142629074	C	G	-	-	-	-	-	-	34	0	0	69	5	7.246376812	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	0.40230003	0.40230003	1	0.02625	0.97375	0	0	2	2.69E-05	1	1	1	NA	NA	NA	NA
1351289	1206694365	PD9774b	3	142651954	C	G	-	-	-	-	-	-	28	0	0	78	8	10.25641026	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	0.569409273	0.569409273	1	0.01	0.99	0	0	2	6.71E-09	1	1	1	NA	NA	NA	NA
1351289	1206694435	PD9774b	3	143483058	T	G	SLC9A9	CCDS33872.1	r.?	-	-	intronic	30	0	0	60	7	11.66666667	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	0.647703048	0.647703048	1	0.005	0.995	0	0	2	2.39E-08	1	1	1	NA	NA	NA	NA
1351289	1206694503	PD9774b	3	144162810	T	G	-	-	-	-	-	-	29	0	0	73	6	8.219178082	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	0.456307431	0.456307431	1	0.025	0.975	0	0	2	2.00E-06	1	1	1	NA	NA	NA	NA
1351289	1206694729	PD9774b	3	146746201	C	G	-	-	-	-	-	-	37	0	0	63	4	6.349206349	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	0.352491455	0.352491455	1	0.02625	0.97375	0	0	2	0.000294233	1	1	1	NA	NA	NA	NA
1351289	1206694784	PD9774b	3	147308570	A	G	-	-	-	-	-	-	34	0	0	54	20	37.03703704	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	2.056200152	2.056200152	1	0	0.5475	0.45125	0.00125	2	2.61E-32	1	1	1	NA	NA	NA	NA
1351289	1206694804	PD9774b	3	147607430	A	G	-	-	-	-	-	-	29	0	0	51	5	9.803921569	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	0.544288276	0.544288276	1	0.00625	0.99375	0	0	2	6.06E-06	1	1	1	NA	NA	NA	NA
1351289	1206694820	PD9774b	3	147872661	A	G	-	-	-	-	-	-	31	0	0	69	16	23.1884058	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	1.287360095	1.287360095	1	0	0.9975	0.0025	0	2	2.27E-22	1	1	1	NA	NA	NA	NA
1351289	1206695412	PD9774b	3	153332005	C	G	-	-	-	-	-	-	36	0	0	84	22	26.19047619	215	0	0	290	76	26.20689655	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	1.45402725	1.45402725	1	0	0.97875	0.02125	0	2	1.66E-31	1	6.81E-105	1	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206695651	PD9774b	3	156445096	C	G	-	-	-	-	-	-	28	0	0	72	6	8.333333333	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	0.462645034	0.462645034	1	0.02125	0.97875	0	0	2	1.84E-06	1	1	1	NA	NA	NA	NA
1351289	1206695685	PD9774b	3	156749004	C	G	LEKR1	CCDS33883.1	r.?	-	-	intronic	36	0	0	66	5	7.575757576	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	0.420586395	0.420586395	1	0.0225	0.9775	0	0	2	2.17E-05	1	1	1	NA	NA	NA	NA
1351289	1206695720	PD9774b	3	157311446	C	G	C3orf55	CCDS46943.1	r.?	-	-	intronic	40	0	0	72	7	9.722222222	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	0.53975254	0.53975254	1	0.00375	0.99625	0	0	2	8.66E-08	1	1	1	NA	NA	NA	NA
1351289	1206695721	PD9774b	3	157322072	T	G	C3orf55	CCDS46943.1	r.?	-	-	downstream	30	0	0	70	9	12.85714286	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	0.713795196	0.713795196	1	0.00375	0.99625	0	0	2	9.65E-11	1	1	1	NA	NA	NA	NA
1351289	1206695825	PD9774b	3	158819569	A	G	IQCJ	CCDS46947.1	r.?	-	-	intronic	31	0	0	71	5	7.042253521	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	0.390967635	0.390967635	1	0.035	0.965	0	0	2	3.09E-05	1	1	1	NA	NA	NA	NA
1351289	1206695934	PD9774b	3	159880031	C	G	-	-	-	-	-	-	33	0	0	85	12	14.11764706	0	0	NA	0	0	NA	2.803739453	1	1	0.196260547	2	1	0.803739453	unphased	1.024285038	1.024285038	1	0	1	0	0	2	2.29E-14	1	1	1	NA	NA	NA	NA
1351289	1206696068	PD9774b	3	161537241	A	G	-	-	-	-	-	-	40	0	0	73	6	8.219178082	0	0	NA	0	0	NA	2.803739453	1	1	0.196260547	2	1	0.803739453	unphased	0.596330331	0.741944829	0.803739453	0.00625	0.99375	0	0	2	2.00E-06	1	1	1	NA	NA	NA	NA
1351289	1206696151	PD9774b	3	162249388	T	G	-	-	-	-	-	-	24	0	0	67	11	16.41791045	0	0	NA	0	0	NA	2.803739453	1	1	0.196260547	2	1	0.803739453	unphased	1.191177252	1.191177252	1	0	0.99625	0.00375	0	2	4.85E-14	1	1	1	NA	NA	NA	NA
1351289	1206696153	PD9774b	3	162271642	C	G	-	-	-	-	-	-	31	0	0	58	6	10.34482759	0	0	NA	0	0	NA	2.803739453	1	1	0.196260547	2	1	0.803739453	unphased	0.750553692	0.933827112	0.803739453	0.00375	0.99625	0	0	2	5.06E-07	1	1	1	NA	NA	NA	NA
1351289	1206696518	PD9774b	3	166017073	A	G	-	-	-	-	-	-	37	0	0	50	5	10	0	0	NA	0	0	NA	2.803739453	1	1	0.196260547	2	1	0.803739453	unphased	0.725535236	0.902699542	0.803739453	0.0025	0.9975	0	0	2	5.49E-06	1	1	1	NA	NA	NA	NA
1351289	1206696585	PD9774b	3	166650713	C	G	-	-	-	-	-	-	18	0	0	70	4	5.714285714	0	0	NA	0	0	NA	2.803739453	1	1	0.196260547	2	1	0.803739453	unphased	0.414591563	0.51582831	0.803739453	0.0075	0.9925	0	0	2	0.000440508	1	1	1	NA	NA	NA	NA
1351289	1206696611	PD9774b	3	167051142	C	G	ZBBX	CCDS3199.2	r.?	-	-	intronic	37	0	0	63	13	20.63492063	0	0	NA	0	0	NA	2.803739453	1	1	0.196260547	2	1	0.803739453	unphased	1.4971362	1.4971362	1	0	0.99	0.01	0	2	1.01E-17	1	1	1	NA	NA	NA	NA
1351289	1206696655	PD9774b	3	167540643	C	G	SERPINI1	CCDS3203.1	r.?	-	-	intronic	36	0	0	67	8	11.94029851	2	0	0	0	0	NA	3.558173709	2	1	0.441826291	3	1	0.558173709	unphased	0.956392431	0.956392431	1	0.00125	0.99875	0	0	2	1.96E-09	1	1	1	NA	NA	NA	NA
1351289	1206696696	PD9774b	3	168082373	C	G	-	-	-	-	-	-	39	0	0	90	5	5.555555556	0	0	NA	0	0	NA	3.558173709	2	1	0.441826291	3	1	0.558173709	unphased	0.444988145	0.797221614	0.558173709	0.00125	0.99875	0	0	2	9.65E-05	1	1	1	NA	NA	NA	NA
1351289	1206696808	PD9774b	3	169005855	C	G	MECOM	ENST00000494292	r.?	-	-	intronic	31	0	0	85	5	5.882352941	0	0	NA	0	0	NA	3.558173709	2	1	0.441826291	3	1	0.558173709	unphased	0.471163918	0.844117003	0.558173709	0	1	0	0	2	7.35E-05	1	1	1	NA	NA	NA	NA
1351289	1206696941	PD9774b	3	170119028	A	G	-	-	-	-	-	-	18	0	0	70	17	24.28571429	0	0	NA	0	0	NA	3.558173709	2	1	0.441826291	3	1	0.558173709	unphased	1.945233891	0.972616946	2	0	1	0	0	2	4.68E-24	1	1	1	NA	NA	NA	NA
1351289	1206697086	PD9774b	3	171443926	A	G	PLD1	CCDS46957.1	r.?	-	-	intronic	32	0	0	88	24	27.27272727	0	0	NA	0	0	NA	6.531613402	5	1	0.468386598	6	1	0.531613402	unphased	2.995425356	0.998475119	3	0	1	0	0	2	1.03E-34	1	1	1	NA	NA	NA	NA
1351289	1206697233	PD9774b	3	172144904	A	G	-	-	-	-	-	-	36	0	0	116	13	11.20689655	1	0	0	0	0	NA	6.531613402	5	1	0.468386598	6	1	0.531613402	unphased	1.23087881	1.23087881	1	0	0.99625	0.00375	0	2	4.16E-14	1	1	1	NA	NA	NA	NA
1351289	1206697262	PD9774b	3	172241153	C	G	TNFSF10	CCDS3219.1	r.145g>c	c.22G>C	p.G8R	missense	32	0	0	101	16	15.84158416	176	0	0	271	26	9.594095941	6.531613402	5	1	0.468386598	6	1	0.531613402	unphased	1.739917038	0.869958519	2	0	1	0	0	2	1.63E-19	1	5.94E-25	1	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206697376	PD9774b	3	172817675	A	G	SPATA16	CCDS3221.1	r.?	-	-	intronic	36	0	0	109	10	9.174311927	0	0	NA	0	0	NA	6.531613402	5	1	0.468386598	6	1	0.531613402	unphased	1.007635441	1.007635441	1	0.00125	0.99875	0	0	2	2.65E-10	1	1	1	NA	NA	NA	NA
1351289	1206697417	PD9774b	3	173256276	A	G	NLGN1	CCDS3222.1	r.?	-	-	intronic	36	0	0	103	8	7.766990291	0	0	NA	0	0	NA	6.531613402	5	1	0.468386598	6	1	0.531613402	unphased	0.853066121	0.853066121	1	0	1	0	0	2	6.09E-08	1	1	1	NA	NA	NA	NA
1351289	1206697438	PD9774b	3	173372654	A	G	NLGN1	CCDS3222.1	r.?	-	-	intronic	28	0	0	105	18	17.14285714	0	0	NA	0	0	NA	6.531613402	5	1	0.468386598	6	1	0.531613402	unphased	1.882838795	0.941419398	2	0	1	0	0	2	2.02E-22	1	1	1	NA	NA	NA	NA
1351289	1206697459	PD9774b	3	173492960	T	G	NLGN1	CCDS3222.1	r.?	-	-	intronic	33	0	0	88	30	34.09090909	0	0	NA	0	0	NA	6.531613402	5	1	0.468386598	6	1	0.531613402	unphased	3.744281695	1.060218452	3.531613402	0	1	0	0	2	2.09E-46	1	1	1	NA	NA	NA	NA
1351289	1206697505	PD9774b	3	173729590	C	G	NLGN1	CCDS3222.1	r.?	-	-	intronic	38	0	0	87	6	6.896551724	0	0	NA	0	0	NA	6.531613402	5	1	0.468386598	6	1	0.531613402	unphased	0.757463883	0.757463883	1	0.00375	0.99625	0	0	2	5.58E-06	1	1	1	NA	NA	NA	NA
1351289	1206697600	PD9774b	3	174440813	A	G	NAALADL2	ENST00000434257	r.?	-	-	intronic	32	0	0	107	13	12.14953271	0	0	NA	0	0	NA	6.531613402	5	1	0.468386598	6	1	0.531613402	unphased	1.334410673	1.334410673	1	0	0.99625	0.00375	0	2	1.43E-14	1	1	1	NA	NA	NA	NA
1351289	1206697673	PD9774b	3	174823600	C	G	NAALADL2	CCDS46960.1	r.?	-	-	intronic	31	0	0	77	16	20.77922078	0	0	NA	0	0	NA	3.857929349	3	0	0.142070651	3	1	0.857929349	unphased	1.72665813	0.863329065	2	0.00125	0.99875	0	0	2	1.56E-21	1	1	1	NA	NA	NA	NA
1351289	1206697709	PD9774b	3	175071104	T	G	NAALADL2	CCDS46960.1	r.?	-	-	intronic	32	0	0	53	6	11.32075472	0	0	NA	0	0	NA	3.857929349	3	0	0.142070651	3	1	0.857929349	unphased	0.940702896	0.940702896	1	0.00375	0.995	0.00125	0	2	2.93E-07	1	1	1	NA	NA	NA	NA
1351289	1206697814	PD9774b	3	176022169	A	G	-	-	-	-	-	-	29	0	0	71	28	39.43661972	0	0	NA	0	0	NA	3.857929349	3	0	0.142070651	3	1	0.857929349	unphased	3.277002578	1.092334193	3	0	1	0	0	2	1.40E-45	1	1	1	NA	NA	NA	NA
1351289	1206698031	PD9774b	3	177885677	A	G	-	-	-	-	-	-	40	0	0	84	6	7.142857143	0	0	NA	0	0	NA	3.857929349	3	0	0.142070651	3	1	0.857929349	unphased	0.593538732	0.691827052	0.857929349	0.0075	0.9925	0	0	2	4.55E-06	1	1	1	NA	NA	NA	NA
1351289	1206698034	PD9774b	3	177900760	A	G	-	-	-	-	-	-	36	0	0	69	9	13.04347826	0	0	NA	0	0	NA	3.857929349	3	0	0.142070651	3	1	0.857929349	unphased	1.083853337	1.083853337	1	0	1	0	0	2	8.45E-11	1	1	1	NA	NA	NA	NA
1351289	1206698043	PD9774b	3	177940922	T	G	-	-	-	-	-	-	34	0	0	81	10	12.34567901	0	0	NA	0	0	NA	3.857929349	3	0	0.142070651	3	1	0.857929349	unphased	1.025869414	1.025869414	1	0.00125	0.99625	0.0025	0	2	1.33E-11	1	1	1	NA	NA	NA	NA
1351289	1206698056	PD9774b	3	178065945	A	G	KCNMB2	ENST00000437510	r.?	-	-	intronic	33	0	0	69	5	7.246376812	0	0	NA	0	0	NA	3.857929349	3	0	0.142070651	3	1	0.857929349	unphased	0.602140743	0.701853531	0.857929349	0.0025	0.9975	0	0	2	2.69E-05	1	1	1	NA	NA	NA	NA
1351289	1206698081	PD9774b	3	178496807	C	G	KCNMB2	CCDS3223.1	r.?	-	-	intronic	35	0	0	64	10	15.625	0	0	NA	0	0	NA	3.857929349	3	0	0.142070651	3	1	0.857929349	unphased	1.298365977	1.298365977	1	0	0.9975	0.0025	0	2	1.16E-12	1	1	1	NA	NA	NA	NA
1351289	1206698385	PD9774b	3	181923621	C	G	-	-	-	-	-	-	33	0	0	71	6	8.450704225	0	0	NA	0	0	NA	3.857929349	3	0	0.142070651	3	1	0.857929349	unphased	0.702214838	0.818499611	0.857929349	0	1	0	0	2	1.69E-06	1	1	1	NA	NA	NA	NA
1351289	1206699036	PD9774b	3	187787589	T	G	-	-	-	-	-	-	39	0	0	49	10	20.40816327	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	1.520737327	1.520737327	1	0	0.99125	0.00875	0	2	6.72E-14	1	1	1	NA	NA	NA	NA
1351289	1206699169	PD9774b	3	189056476	C	G	-	-	-	-	-	-	38	0	0	52	4	7.692307692	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.342431762	0.342431762	1	0.03875	0.96125	0	0	2	0.000139698	1	1	1	NA	NA	NA	NA
1351289	1206699296	PD9774b	3	190626583	A	G	-	-	-	-	-	-	31	0	0	60	8	13.33333333	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.593548387	0.593548387	1	0.01	0.99	0	0	2	7.93E-10	1	1	1	NA	NA	NA	NA
1351289	1206699393	PD9774b	3	192063823	A	G	FGF12	CCDS3301.1	r.?	-	-	intronic	30	0	0	51	6	11.76470588	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.523719165	0.523719165	1	0.00625	0.99375	0	0	2	2.32E-07	1	1	1	NA	NA	NA	NA
1351289	1206699419	PD9774b	3	192394269	C	G	FGF12	CCDS46983.1	r.?	-	-	intronic	28	0	0	43	4	9.302325581	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.414103526	0.414103526	1	0.02375	0.97625	0	0	2	6.60E-05	1	1	1	NA	NA	NA	NA
1351289	1206699475	PD9774b	3	193628519	A	G	-	-	-	-	-	-	33	0	0	50	7	14	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.623225806	0.623225806	1	0.005	0.995	0	0	2	6.46E-09	1	1	1	NA	NA	NA	NA
1351289	1206700755	PD9774b	4	930097	A	G	GAK	CCDS3340.1	r.?	-	-	upstream	37	0	0	45	4	8.888888889	0	0	NA	0	0	NA	0.822303617	0	0	0.177696383	1	0	0.822303617	unphased	0.46879258	0.570096701	0.822303617	0.01	0.99	0	0	2	7.91E-05	1	1	1	NA	NA	NA	NA
1351289	1206702028	PD9774b	4	12839129	A	G	-	-	-	-	-	-	26	0	0	48	7	14.58333333	0	0	NA	0	0	NA	0.822303617	0	0	0.177696383	1	0	0.822303617	unphased	0.769112826	0.9353149	0.822303617	0.00125	0.9975	0.00125	0	2	4.81E-09	1	1	1	NA	NA	NA	NA
1351289	1206702156	PD9774b	4	14768081	T	G	-	-	-	-	-	-	34	0	0	51	10	19.60784314	0	0	NA	0	0	NA	0.822303617	0	0	0.177696383	1	0	0.822303617	unphased	1.034101279	1.034101279	1	0	0.99875	0.00125	0	2	1.04E-13	1	1	1	NA	NA	NA	NA
1351289	1206702352	PD9774b	4	17329203	T	G	-	-	-	-	-	-	43	0	0	53	6	11.32075472	0	0	NA	0	0	NA	0.822303617	0	0	0.177696383	1	0	0.822303617	unphased	0.597047153	0.726066553	0.822303617	0.0025	0.9975	0	0	2	2.93E-07	1	1	1	NA	NA	NA	NA
1351289	1206702733	PD9774b	4	22236374	A	G	-	-	-	-	-	-	34	0	0	49	9	18.36734694	0	0	NA	0	0	NA	0.822303617	0	0	0.177696383	1	0	0.822303617	unphased	0.968678545	0.968678545	1	0.00125	0.99875	0	0	2	3.35E-12	1	1	1	NA	NA	NA	NA
1351289	1206703189	PD9774b	4	27645110	C	G	-	-	-	-	-	-	31	0	0	46	5	10.86956522	0	0	NA	0	0	NA	0.822303617	0	0	0.177696383	1	0	0.822303617	unphased	0.573251796	0.697129118	0.822303617	0.00375	0.99625	0	0	2	3.61E-06	1	1	1	NA	NA	NA	NA
1351289	1206703552	PD9774b	4	32175451	A	G	-	-	-	-	-	-	46	0	0	78	14	17.94871795	0	0	NA	0	0	NA	1.766479176	1	0	0.233520824	1	1	0.766479176	unphased	1.116067809	1.116067809	1	0	0.99875	0.00125	0	2	4.63E-18	1	1	1	NA	NA	NA	NA
1351289	1206703565	PD9774b	4	32389659	T	G	-	-	-	-	-	-	37	0	0	47	10	21.27659574	0	0	NA	0	0	NA	1.766479176	1	0	0.233520824	1	1	0.766479176	unphased	1.322998315	1.322998315	1	0	0.9975	0.0025	0	2	4.27E-14	1	1	1	NA	NA	NA	NA
1351289	1206704072	PD9774b	4	37722636	C	G	-	-	-	-	-	-	37	0	0	68	14	20.58823529	0	0	NA	0	0	NA	1.766479176	1	0	0.233520824	1	1	0.766479176	unphased	1.280195428	1.280195428	1	0	0.995	0.005	0	2	5.84E-19	1	1	1	NA	NA	NA	NA
1351289	1206704482	PD9774b	4	41070244	C	G	APBB2	CCDS3837.1	r.?	-	-	intronic	34	0	0	50	6	12	2	0	0	0	0	NA	1.766479176	1	0	0.233520824	1	1	0.766479176	unphased	0.74617105	0.97350466	0.766479176	0.0025	0.99375	0.00375	0	2	2.06E-07	1	1	1	NA	NA	NA	NA
1351289	1206704650	PD9774b	4	43069645	C	G	-	-	-	-	-	-	39	0	0	54	6	11.11111111	0	0	NA	0	0	NA	1.766479176	1	0	0.233520824	1	1	0.766479176	unphased	0.69089912	0.901393203	0.766479176	0.00125	0.9975	0.00125	0	2	3.29E-07	1	1	1	NA	NA	NA	NA
1351289	1206704691	PD9774b	4	43446818	A	G	-	-	-	-	-	-	43	0	0	58	9	15.51724138	0	0	NA	0	0	NA	1.766479176	1	0	0.233520824	1	1	0.766479176	unphased	0.964876357	0.964876357	1	0.00125	0.99875	0	0	2	1.67E-11	1	1	1	NA	NA	NA	NA
1351289	1206704738	PD9774b	4	43949932	A	G	-	-	-	-	-	-	21	0	0	41	6	14.63414634	0	0	NA	0	0	NA	1.766479176	1	0	0.233520824	1	1	0.766479176	unphased	0.909964695	0.909964695	1	0.00125	0.9975	0.00125	0	2	6.05E-08	1	1	1	NA	NA	NA	NA
1351289	1206704856	PD9774b	4	45215797	T	G	-	-	-	-	-	-	25	0	0	63	9	14.28571429	0	0	NA	0	0	NA	1.766479176	1	0	0.233520824	1	1	0.766479176	unphased	0.888298868	0.888298868	1	0.00375	0.99625	0	0	2	3.62E-11	1	1	1	NA	NA	NA	NA
1351289	1206711561	PD9774b	4	56026291	A	G	-	-	-	-	-	-	30	0	0	74	15	20.27027027	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.307759372	1.307759372	1	0	0.99625	0.00375	0	2	4.22E-20	1	1	1	NA	NA	NA	NA
1351289	1206711693	PD9774b	4	57394621	A	G	ARL9	ENST00000360096	r.?	-	-	downstream	45	0	0	44	8	18.18181818	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.173020528	1.173020528	1	0	0.99875	0.00125	0	2	5.90E-11	1	1	1	NA	NA	NA	NA
1351289	1206711891	PD9774b	4	59859304	C	G	-	-	-	-	-	-	28	0	0	69	10	14.49275362	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.935016363	0.935016363	1	0	1	0	0	2	2.54E-12	1	1	1	NA	NA	NA	NA
1351289	1206711937	PD9774b	4	60227732	T	G	-	-	-	-	-	-	37	0	0	67	9	13.43283582	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.866634569	0.866634569	1	0.00125	0.99875	0	0	2	6.43E-11	1	1	1	NA	NA	NA	NA
1351289	1206712107	PD9774b	4	61897662	C	G	-	-	-	-	-	-	37	0	0	56	4	7.142857143	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.460829493	0.460829493	1	0.01375	0.98625	0	0	2	0.000186538	1	1	1	NA	NA	NA	NA
1351289	1206712279	PD9774b	4	63939806	A	G	-	-	-	-	-	-	25	0	0	64	12	18.75	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.209677419	1.209677419	1	0	0.9975	0.0025	0	2	6.30E-16	1	1	1	NA	NA	NA	NA
1351289	1206712378	PD9774b	4	64921370	T	G	-	-	-	-	-	-	35	0	0	62	11	17.74193548	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.144640999	1.144640999	1	0	0.99875	0.00125	0	2	1.96E-14	1	1	1	NA	NA	NA	NA
1351289	1206712401	PD9774b	4	65165885	T	G	TECRL	CCDS33990.1	r.?	-	-	intronic	36	0	0	59	4	6.779661017	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.437397485	0.437397485	1	0.015	0.985	0	0	2	0.00022841	1	1	1	NA	NA	NA	NA
1351289	1206712468	PD9774b	4	65648568	A	G	-	-	-	-	-	-	37	0	0	54	9	16.66666667	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.075268817	1.075268817	1	0	0.99875	0.00125	0	2	8.48E-12	1	1	1	NA	NA	NA	NA
1351289	1206712553	PD9774b	4	66563652	T	G	-	-	-	-	-	-	43	0	0	75	4	5.333333333	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.344086022	0.344086022	1	0.02875	0.97125	0	0	2	0.000572493	1	1	1	NA	NA	NA	NA
1351289	1206712567	PD9774b	4	66849401	A	G	-	-	-	-	-	-	31	0	0	55	6	10.90909091	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.703812317	0.703812317	1	0	1	0	0	2	3.67E-07	1	1	1	NA	NA	NA	NA
1351289	1206712637	PD9774b	4	67775145	C	G	-	-	-	-	-	-	32	0	0	59	4	6.779661017	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.437397485	0.437397485	1	0.00875	0.99125	0	0	2	0.00022841	1	1	1	NA	NA	NA	NA
1351289	1206712667	PD9774b	4	68171901	C	G	-	-	-	-	-	-	25	0	0	50	5	10	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.64516129	0.64516129	1	0.0075	0.9925	0	0	2	5.49E-06	1	1	1	NA	NA	NA	NA
1351289	1206712702	PD9774b	4	68595610	C	G	-	-	-	-	-	-	29	0	0	39	10	25.64102564	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.654259719	1.654259719	1	0	0.9925	0.0075	0	2	5.44E-15	1	1	1	NA	NA	NA	NA
1351289	1206712742	PD9774b	4	68984753	A	G	TMPRSS11F	CCDS3520.1	r.?	-	-	intronic	37	0	0	66	8	12.12121212	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.782013685	0.782013685	1	0.005	0.995	0	0	2	1.73E-09	1	1	1	NA	NA	NA	NA
1351289	1206712957	PD9774b	4	70884345	T	G	-	-	-	-	-	-	31	0	0	59	6	10.16949153	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.656096227	0.656096227	1	0.005	0.995	0	0	2	5.61E-07	1	1	1	NA	NA	NA	NA
1351289	1206713115	PD9774b	4	72680516	T	G	-	-	-	-	-	-	30	0	0	51	7	13.7254902	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.885515497	0.885515497	1	0.00125	0.9975	0.00125	0	2	7.46E-09	1	1	1	NA	NA	NA	NA
1351289	1206713295	PD9774b	4	74643123	C	G	-	-	-	-	-	-	32	0	0	55	8	14.54545455	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.938416422	0.938416422	1	0	1	0	0	2	3.86E-10	1	1	1	NA	NA	NA	NA
1351289	1206713536	PD9774b	4	77674170	A	G	SHROOM3	CCDS3579.2	r.?	-	-	intronic	34	0	0	58	11	18.96551724	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.223581758	1.223581758	1	0	1	0	0	2	8.96E-15	1	1	1	NA	NA	NA	NA
1351289	1206713726	PD9774b	4	80466153	A	G	-	-	-	-	-	-	31	0	0	63	9	14.28571429	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.921658986	0.921658986	1	0.00375	0.995	0.00125	0	2	3.62E-11	1	1	1	NA	NA	NA	NA
1351289	1206713864	PD9774b	4	82498672	T	G	-	-	-	-	-	-	36	0	0	83	9	10.84337349	202	0	0	161	4	2.48447205	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.573292472	0.686234551	0.835417673	0.0025	0.9975	0	0	2	4.60E-10	1	0.009059843	1	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206714058	PD9774b	4	84688167	T	G	-	-	-	-	-	-	27	0	0	45	4	8.888888889	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.469958273	0.562542892	0.835417673	0.00125	0.99875	0	0	2	7.91E-05	1	1	1	NA	NA	NA	NA
1351289	1206714087	PD9774b	4	85381536	A	G	-	-	-	-	-	-	51	0	0	62	6	9.677419355	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.51164812	0.61244589	0.835417673	0.00375	0.99625	0	0	2	7.56E-07	1	1	1	NA	NA	NA	NA
1351289	1206714784	PD9774b	4	94792502	A	G	-	-	-	-	-	-	37	0	0	52	5	9.615384615	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.508368325	0.608519955	0.835417673	0.005	0.995	0	0	2	6.68E-06	1	1	1	NA	NA	NA	NA
1351289	1206714936	PD9774b	4	96827317	A	G	-	-	-	-	-	-	45	0	0	53	9	16.98113208	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.897797645	1.074669203	0.835417673	0	1	0	0	2	7.10E-12	1	1	1	NA	NA	NA	NA
1351289	1206715069	PD9774b	4	99117090	T	G	-	-	-	-	-	-	24	0	0	48	11	22.91666667	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	1.211611174	1.211611174	1	0	0.99875	0.00125	0	2	9.31E-16	1	1	1	NA	NA	NA	NA
1351289	1206715124	PD9774b	4	99791814	A	G	EIF4E	CCDS34031.1	r.?	-	-	downstream	32	0	0	41	5	12.19512195	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.644759826	0.771781406	0.835417673	0.0025	0.995	0.0025	0	2	2.02E-06	1	1	1	NA	NA	NA	NA
1351289	1206715511	PD9774b	4	104340112	C	G	-	-	-	-	-	-	33	0	0	44	11	25	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	1.321757644	1.321757644	1	0	1	0	0	2	3.22E-16	1	1	1	NA	NA	NA	NA
1351289	1206715549	PD9774b	4	105065783	C	G	-	-	-	-	-	-	33	0	0	66	5	7.575757576	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.400532619	0.479439964	0.835417673	0.01375	0.98625	0	0	2	2.17E-05	1	1	1	NA	NA	NA	NA
1351289	1206715578	PD9774b	4	105558219	A	G	-	-	-	-	-	-	33	0	0	47	5	10.63829787	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.562450061	0.67325612	0.835417673	0.005	0.995	0	0	2	4.02E-06	1	1	1	NA	NA	NA	NA
1351289	1206716018	PD9774b	4	111873144	A	G	-	-	-	-	-	-	44	0	0	46	7	15.2173913	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.804548131	0.963048972	0.835417673	0.00125	0.99875	0	0	2	3.53E-09	1	1	1	NA	NA	NA	NA
1351289	1206716065	PD9774b	4	112567344	C	G	-	-	-	-	-	-	36	0	0	55	7	12.72727273	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.672894801	0.80545914	0.835417673	0.0025	0.9975	0	0	2	1.28E-08	1	1	1	NA	NA	NA	NA
1351289	1206716120	PD9774b	4	113558247	C	G	LARP7	CCDS3701.2	r.128c>g	c.?	p.?	5'UTR variant	28	0	0	37	7	18.91891892	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	1.000249028	1.000249028	1	0	0.9975	0.0025	0	2	7.05E-10	1	1	1	NA	NA	NA	NA
1351289	1206717051	PD9774b	4	126639972	A	G	-	-	-	-	-	-	40	0	0	49	10	20.40816327	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	1.078985832	1.078985832	1	0	0.99875	0.00125	0	2	6.72E-14	1	1	1	NA	NA	NA	NA
1351289	1206717447	PD9774b	4	132240675	A	G	-	-	-	-	-	-	28	0	0	35	7	20	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	1.057406115	1.057406115	1	0.0025	0.9975	0	0	2	4.65E-10	1	1	1	NA	NA	NA	NA
1351289	1206718004	PD9774b	4	137221417	C	G	-	-	-	-	-	-	41	0	0	39	6	15.38461538	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.813389319	0.973631928	0.835417673	0.00125	0.99875	0	0	2	4.43E-08	1	1	1	NA	NA	NA	NA
1351289	1206718024	PD9774b	4	137523728	A	G	-	-	-	-	-	-	33	0	0	41	5	12.19512195	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.644759826	0.771781406	0.835417673	0.00375	0.99625	0	0	2	2.02E-06	1	1	1	NA	NA	NA	NA
1351289	1206718974	PD9774b	4	150134978	A	G	-	-	-	-	-	-	46	0	0	71	7	9.85915493	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.521256536	0.623947221	0.835417673	0.00375	0.99625	0	0	2	7.85E-08	1	1	1	NA	NA	NA	NA
1351289	1206719313	PD9774b	4	154600198	C	G	-	-	-	-	-	-	36	0	0	53	4	7.547169811	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.399021176	0.477630757	0.835417673	0.0125	0.9875	0	0	2	0.000150502	1	1	1	NA	NA	NA	NA
1351289	1206719386	PD9774b	4	155646085	T	G	LRAT	ENST00000502525	r.?	-	-	intronic	26	0	0	58	13	22.4137931	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	1.185024095	1.185024095	1	0	0.9975	0.0025	0	2	3.12E-18	1	1	1	NA	NA	NA	NA
1351289	1206719394	PD9774b	4	155891381	C	G	-	-	-	-	-	-	37	0	0	50	11	22	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	1.163146727	1.163146727	1	0.00125	0.99875	0	0	2	1.52E-15	1	1	1	NA	NA	NA	NA
1351289	1206719476	PD9774b	4	157140880	T	G	-	-	-	-	-	-	44	0	0	55	8	14.54545455	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.769022629	0.920524732	0.835417673	0.0025	0.9975	0	0	2	3.86E-10	1	1	1	NA	NA	NA	NA
1351289	1206719502	PD9774b	4	157807829	A	G	PDGFC	ENST00000502773	r.?	-	-	intronic	32	0	0	53	11	20.75471698	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	1.097308233	1.097308233	1	0.00125	0.99875	0	0	2	3.07E-15	1	1	1	NA	NA	NA	NA
1351289	1206719585	PD9774b	4	159263031	C	G	RXFP1	ENST00000460056	r.?	-	-	intronic	35	0	0	37	5	13.51351351	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.714463591	0.855217234	0.835417673	0.0025	0.99625	0.00125	0	2	1.19E-06	1	1	1	NA	NA	NA	NA
1351289	1206719607	PD9774b	4	159479317	A	G	RXFP1	CCDS43276.1	r.?	-	-	intronic	41	0	0	50	4	8	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.422962446	0.506288602	0.835417673	0.0125	0.9875	0	0	2	0.000119787	1	1	1	NA	NA	NA	NA
1351289	1206719658	PD9774b	4	160145586	C	G	RAPGEF2	ENST00000505478	r.?	-	-	intronic	33	0	0	52	4	7.692307692	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.40669466	0.486815964	0.835417673	0.00875	0.99125	0	0	2	0.000139698	1	1	1	NA	NA	NA	NA
1351289	1206719726	PD9774b	4	160771971	A	G	-	-	-	-	-	-	41	0	0	57	6	10.52631579	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.556529534	0.666169214	0.835417673	0.00125	0.99875	0	0	2	4.56E-07	1	1	1	NA	NA	NA	NA
1351289	1206720010	PD9774b	4	164342723	A	G	-	-	-	-	-	-	43	0	0	45	5	11.11111111	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.587447842	0.703178614	0.835417673	0.0025	0.9975	0	0	2	3.23E-06	1	1	1	NA	NA	NA	NA
1351289	1206720647	PD9774b	4	173388333	T	G	GALNTL6	CCDS34104.1	r.?	-	-	intronic	34	0	0	56	7	12.5	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.660878822	0.791075941	0.835417673	0.00125	0.99875	0	0	2	1.46E-08	1	1	1	NA	NA	NA	NA
1351289	1206720833	PD9774b	4	175676022	A	G	GLRA3	CCDS3822.1	r.?	-	-	intronic	44	0	0	60	11	18.33333333	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.969288939	0.969288939	1	0	1	0	0	2	1.34E-14	1	1	1	NA	NA	NA	NA
1351289	1206720854	PD9774b	4	176005558	A	G	-	-	-	-	-	-	48	0	0	42	12	28.57142857	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	1.510580165	1.510580165	1	0	0.9925	0.0075	0	2	2.35E-18	1	1	1	NA	NA	NA	NA
1351289	1206720967	PD9774b	4	177441861	C	G	-	-	-	-	-	-	34	0	0	49	6	12.24489796	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.647391499	0.774931534	0.835417673	0	1	0	0	2	1.82E-07	1	1	1	NA	NA	NA	NA
1351289	1206721398	PD9774b	4	182251613	C	G	-	-	-	-	-	-	48	0	0	50	7	14	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.740184281	0.886005054	0.835417673	0.00125	0.99875	0	0	2	6.46E-09	1	1	1	NA	NA	NA	NA
1351289	1206721747	PD9774b	4	185887842	T	G	-	-	-	-	-	-	13	0	0	29	3	10.34482759	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.546934198	0.654683538	0.835417673	0.0025	0.99625	0.00125	0	2	0.000414371	1	1	1	NA	NA	NA	NA
1351289	1206725587	PD9774b	5	895806	C	G	BRD9	CCDS34127.1	r.?	-	-	upstream	38	0	0	59	5	8.474576271	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	0.519023012	0.771370066	0.672858638	0.00375	0.99625	0	0	2	1.25E-05	1	1	1	NA	NA	NA	NA
1351289	1206726059	PD9774b	5	3637346	T	G	ENSG00000224512	ENST00000432338	r.?	-	-	intronic	20	0	0	38	7	18.42105263	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	1.128192126	1.128192126	1	0	0.99875	0.00125	0	2	8.61E-10	1	1	1	NA	NA	NA	NA
1351289	1206726214	PD9774b	5	4848537	T	G	ENSG00000224867	ENST00000416839	r.?	-	-	intronic	44	0	0	53	10	18.86792453	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	1.155560668	1.155560668	1	0	0.9975	0.0025	0	2	1.57E-13	1	1	1	NA	NA	NA	NA
1351289	1206726223	PD9774b	5	5011537	T	G	-	-	-	-	-	-	21	0	0	50	13	26	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	1.592362601	1.592362601	1	0	0.97875	0.02125	0	2	3.65E-19	1	1	1	NA	NA	NA	NA
1351289	1206726324	PD9774b	5	6289798	A	G	-	-	-	-	-	-	32	0	0	62	6	9.677419355	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	0.592690794	0.88085485	0.672858638	0	1	0	0	2	7.56E-07	1	1	1	NA	NA	NA	NA
1351289	1206726441	PD9774b	5	7319165	A	G	-	-	-	-	-	-	39	0	0	49	8	16.32653061	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	0.999913721	0.999913721	1	0	1	0	0	2	1.47E-10	1	1	1	NA	NA	NA	NA
1351289	1206726458	PD9774b	5	7611974	C	G	ADCY2	CCDS3872.2	r.?	-	-	intronic	28	0	0	52	10	19.23076923	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	1.177782989	1.177782989	1	0	0.99875	0.00125	0	2	1.28E-13	1	1	1	NA	NA	NA	NA
1351289	1206726524	PD9774b	5	8409229	C	G	-	-	-	-	-	-	35	0	0	66	7	10.60606061	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	0.649565163	0.965381326	0.672858638	0.00125	0.99875	0	0	2	4.70E-08	1	1	1	NA	NA	NA	NA
1351289	1206726760	PD9774b	5	11011066	T	G	CTNND2	CCDS3881.1	r.?	-	-	intronic	37	0	0	61	14	22.95081967	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	1.405616419	1.405616419	1	0	0.99375	0.00625	0	2	1.10E-19	1	1	1	NA	NA	NA	NA
1351289	1206726868	PD9774b	5	12683296	A	G	-	-	-	-	-	-	34	0	0	59	8	13.55932203	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	0.830436819	0.830436819	1	0.00375	0.99625	0	0	2	6.90E-10	1	1	1	NA	NA	NA	NA
1351289	1206726933	PD9774b	5	13584723	T	G	-	-	-	-	-	-	25	0	0	72	13	18.05555556	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	1.105807362	1.105807362	1	0	0.99875	0.00125	0	2	6.58E-17	1	1	1	NA	NA	NA	NA
1351289	1206727074	PD9774b	5	15601484	C	G	FBXL7	ENST00000504595	r.?	-	-	intronic	25	1	4	64	10	15.625	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	0.956948678	0.956948678	1	0	1	0	0	2	1.16E-12	0.117779757	1	1	NA	NA	NA	NA
1351289	1206727089	PD9774b	5	15798380	T	G	FBXL7	ENST00000504595	r.?	-	-	intronic	33	0	0	48	8	16.66666667	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	1.020745257	1.020745257	1	0.0025	0.99625	0.00125	0	2	1.23E-10	1	1	1	NA	NA	NA	NA
1351289	1206727121	PD9774b	5	16211638	C	G	-	-	-	-	-	-	29	0	0	59	10	16.94915254	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	1.038046024	1.038046024	1	0	1	0	0	2	4.91E-13	1	1	1	NA	NA	NA	NA
1351289	1206727160	PD9774b	5	16791391	T	G	MYO10	ENST00000427430	r.?	-	-	intronic	41	0	0	60	4	6.666666667	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	0.408298103	0.606811119	0.672858638	0.0025	0.9975	0	0	2	0.000243755	1	1	1	NA	NA	NA	NA
1351289	1206727194	PD9774b	5	16986519	C	G	-	-	-	-	-	-	36	0	0	55	4	7.272727273	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	0.445416112	0.661975766	0.672858638	0.0025	0.9975	0	0	2	0.000173903	1	1	1	NA	NA	NA	NA
1351289	1206727350	PD9774b	5	17692395	C	G	-	-	-	-	-	-	36	0	0	65	4	6.153846154	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	0.376890556	0.560133341	0.672858638	0.005	0.995	0	0	2	0.000331785	1	1	1	NA	NA	NA	NA
1351289	1206727510	PD9774b	5	18903087	C	G	-	-	-	-	-	-	29	0	0	53	6	11.32075472	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	0.693336401	1.030433976	0.672858638	0	1	0	0	2	2.93E-07	1	1	1	NA	NA	NA	NA
1351289	1206727568	PD9774b	5	19538449	A	G	CDH18	CCDS3652.1	r.?	-	-	intronic	33	0	0	64	8	12.5	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	0.765558943	1.137770848	0.672858638	0.0025	0.995	0.0025	0	2	1.35E-09	1	1	1	NA	NA	NA	NA
1351289	1206727589	PD9774b	5	19767889	T	G	CDH18	CCDS3652.1	r.?	-	-	intronic	38	0	0	54	8	14.81481481	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	0.907329117	0.907329117	1	0	1	0	0	2	3.31E-10	1	1	1	NA	NA	NA	NA
1351289	1206727958	PD9774b	5	22330566	T	G	CDH12	CCDS3890.1	r.?	-	-	intronic	40	0	0	48	7	14.58333333	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	0.8931521	0.8931521	1	0	1	0	0	2	4.81E-09	1	1	1	NA	NA	NA	NA
1351289	1206728044	PD9774b	5	23583208	T	G	-	-	-	-	-	-	33	0	0	60	5	8.333333333	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	0.510372628	0.758513899	0.672858638	0.00125	0.99875	0	0	2	1.36E-05	1	1	1	NA	NA	NA	NA
1351289	1206728085	PD9774b	5	23989843	A	G	-	-	-	-	-	-	41	0	0	67	17	25.37313433	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	1.553970391	1.553970391	1	0	0.98125	0.01875	0	2	2.03E-24	1	1	1	NA	NA	NA	NA
1351289	1206728187	PD9774b	5	25016954	C	G	-	-	-	-	-	-	42	0	0	54	8	14.81481481	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	0.907329117	0.907329117	1	0.00125	0.99875	0	0	2	3.31E-10	1	1	1	NA	NA	NA	NA
1351289	1206728245	PD9774b	5	25625241	C	G	-	-	-	-	-	-	44	0	0	62	10	16.12903226	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	0.98781799	0.98781799	1	0	1	0	0	2	8.29E-13	1	1	1	NA	NA	NA	NA
1351289	1206728760	PD9774b	5	30452275	A	G	-	-	-	-	-	-	31	0	0	39	6	15.38461538	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	0.942226391	0.942226391	1	0.00125	0.9975	0.00125	0	2	4.43E-08	1	1	1	NA	NA	NA	NA
1351289	1206728845	PD9774b	5	31573613	T	G	-	-	-	-	-	-	39	0	0	44	5	11.36363636	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	0.695962675	1.034337135	0.672858638	0.00125	0.9975	0.00125	0	2	2.88E-06	1	1	1	NA	NA	NA	NA
1351289	1206728910	PD9774b	5	31959596	C	G	PDZD2	CCDS34137.1	r.?	-	-	intronic	28	0	0	41	4	9.756097561	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	0.597509419	0.888016272	0.672858638	0.00125	0.99875	0	0	2	5.46E-05	1	1	1	NA	NA	NA	NA
1351289	1206729014	PD9774b	5	32930608	A	G	-	-	-	-	-	-	30	0	0	54	9	16.66666667	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	1.020745257	1.020745257	1	0	0.99875	0.00125	0	2	8.48E-12	1	1	1	NA	NA	NA	NA
1351289	1206729261	PD9774b	5	35137493	T	G	PRLR	CCDS3909.1	r.?	-	-	intronic	32	0	0	72	6	8.333333333	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	0.510372628	0.758513899	0.672858638	0.00125	0.99875	0	0	2	1.84E-06	1	1	1	NA	NA	NA	NA
1351289	1206729281	PD9774b	5	35382139	C	G	-	-	-	-	-	-	41	0	0	64	10	15.625	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	0.956948678	0.956948678	1	0.00125	0.99875	0	0	2	1.16E-12	1	1	1	NA	NA	NA	NA
1351289	1206729312	PD9774b	5	35817796	C	G	SPEF2	CCDS43309.1	r.?	-	-	downstream	44	0	0	66	5	7.575757576	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	0.463975117	0.68955809	0.672858638	0	1	0	0	2	2.17E-05	1	1	1	NA	NA	NA	NA
1351289	1206729318	PD9774b	5	35861148	T	G	IL7R	CCDS3911.1	r.?	-	-	intronic	42	0	0	62	5	8.064516129	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	0.493908995	0.734045708	0.672858638	0	0.99875	0.00125	0	2	1.60E-05	1	1	1	NA	NA	NA	NA
1351289	1206729416	PD9774b	5	36915052	A	G	NIPBL	CCDS3920.1	r.?	-	-	intronic	36	0	0	52	11	21.15384615	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	1.295561287	1.295561287	1	0	0.99875	0.00125	0	2	2.44E-15	1	1	1	NA	NA	NA	NA
1351289	1206729431	PD9774b	5	37070525	A	G	NIPBL	CCDS3920.1	r.?	-	-	downstream	40	0	0	72	10	13.88888889	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	0.850621047	0.850621047	1	0.00375	0.99625	0	0	2	3.95E-12	1	1	1	NA	NA	NA	NA
1351289	1206729760	PD9774b	5	40772770	C	G	PRKAA1	CCDS3932.2	r.?	-	-	intronic	23	0	0	58	5	8.620689655	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	0.527971685	0.78466955	0.672858638	0.0025	0.9975	0	0	2	1.15E-05	1	1	1	NA	NA	NA	NA
1351289	1206730031	PD9774b	5	44499425	A	G	-	-	-	-	-	-	38	0	0	67	19	28.35820896	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	1.736790437	1.736790437	1	0	0.91625	0.08375	0	2	3.67E-28	1	1	1	NA	NA	NA	NA
1351289	1206731370	PD9774b	5	50312779	A	G	-	-	-	-	-	-	46	0	0	47	6	12.76595745	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	0.781847431	1.161978738	0.672858638	0	0.99875	0.00125	0	2	1.41E-07	1	1	1	NA	NA	NA	NA
1351289	1206731378	PD9774b	5	50522998	A	G	-	-	-	-	-	-	29	0	0	54	10	18.51851852	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	1.134161396	1.134161396	1	0	0.99625	0.00375	0	2	1.91E-13	1	1	1	NA	NA	NA	NA
1351289	1206731401	PD9774b	5	50794340	A	G	-	-	-	-	-	-	33	0	0	48	5	10.41666667	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	0.637965785	0.948142373	0.672858638	0	1	0	0	2	4.47E-06	1	1	1	NA	NA	NA	NA
1351289	1206731409	PD9774b	5	50946748	A	G	-	-	-	-	-	-	34	0	0	60	5	8.333333333	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	0.510372628	0.758513899	0.672858638	0.0025	0.9975	0	0	2	1.36E-05	1	1	1	NA	NA	NA	NA
1351289	1206731706	PD9774b	5	54378520	T	G	-	-	-	-	-	-	32	0	0	34	5	14.70588235	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.778359013	0.925264798	0.841228386	0	0.9975	0.0025	0	2	7.71E-07	1	1	1	NA	NA	NA	NA
1351289	1206732060	PD9774b	5	58156385	A	G	RAB3C	CCDS3976.1	r.?	-	-	downstream	46	0	0	48	13	27.08333333	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	1.433477849	1.433477849	1	0	0.99	0.01	0	2	2.00E-19	1	1	1	NA	NA	NA	NA
1351289	1206732121	PD9774b	5	59074237	T	G	PDE4D	CCDS47213.1	r.?	-	-	intronic	43	0	0	61	6	9.836065574	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.52060734	0.618865636	0.841228386	0.005	0.995	0	0	2	6.85E-07	1	1	1	NA	NA	NA	NA
1351289	1206732342	PD9774b	5	62019350	C	G	-	-	-	-	-	-	34	0	0	45	5	11.11111111	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.588093477	0.699088959	0.841228386	0.005	0.995	0	0	2	3.23E-06	1	1	1	NA	NA	NA	NA
1351289	1206732443	PD9774b	5	63396982	A	G	-	-	-	-	-	-	27	0	0	44	7	15.90909091	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.842042932	1.000968282	0.841228386	0	0.99875	0.00125	0	2	2.55E-09	1	1	1	NA	NA	NA	NA
1351289	1206732558	PD9774b	5	65367989	C	G	ERBB2IP	CCDS34172.1	r.?	-	-	intronic	34	0	0	61	5	8.196721311	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.43383945	0.515721363	0.841228386	0.01	0.98875	0.00125	0	2	1.47E-05	1	1	1	NA	NA	NA	NA
1351289	1206732564	PD9774b	5	65464902	C	G	SFRS12	CCDS43323.1	r.?	-	-	intronic	35	0	0	54	7	12.96296296	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.686109056	0.815603785	0.841228386	0	1	0	0	2	1.13E-08	1	1	1	NA	NA	NA	NA
1351289	1206732629	PD9774b	5	66638812	C	G	-	-	-	-	-	-	36	0	0	53	10	18.86792453	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.9986493	0.9986493	1	0	1	0	0	2	1.57E-13	1	1	1	NA	NA	NA	NA
1351289	1206732860	PD9774b	5	70680324	T	G	-	-	-	-	-	-	32	0	0	51	11	21.56862745	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	1.141593219	1.141593219	1	0	0.99625	0.00375	0	2	1.94E-15	1	1	1	NA	NA	NA	NA
1351289	1206733098	PD9774b	5	74519923	A	G	ANKRD31	CCDS47233.1	r.?	-	-	intronic	24	0	0	28	6	21.42857143	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	1.134180276	1.134180276	1	0.00375	0.9925	0.00375	0	2	5.36E-09	1	1	1	NA	NA	NA	NA
1351289	1206733431	PD9774b	5	78885037	C	G	-	-	-	-	-	-	32	0	0	48	6	12.5	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.661605161	0.786475079	0.841228386	0.00125	0.9975	0.00125	0	2	1.60E-07	1	1	1	NA	NA	NA	NA
1351289	1206733733	PD9774b	5	83187768	C	G	-	-	-	-	-	-	40	0	0	55	6	10.90909091	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.577400868	0.68637825	0.841228386	0.00375	0.99625	0	0	2	3.67E-07	1	1	1	NA	NA	NA	NA
1351289	1206734003	PD9774b	5	86674318	C	G	RASA1	CCDS34200.1	r.3014c>g	c.2450C>G	p.S817C	missense	29	0	0	46	5	10.86956522	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.575308836	0.683891373	0.841228386	0.00375	0.99625	0	0	2	3.61E-06	1	1	1	NA	NA	NA	NA
1351289	1206734162	PD9774b	5	89569032	A	G	-	-	-	-	-	-	38	0	0	47	5	10.63829787	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.563068222	0.669340492	0.841228386	0.00625	0.99375	0	0	2	4.02E-06	1	1	1	NA	NA	NA	NA
1351289	1206734253	PD9774b	5	90959831	A	G	-	-	-	-	-	-	34	0	0	58	12	20.68965517	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	1.095070612	1.095070612	1	0	1	0	0	2	1.76E-16	1	1	1	NA	NA	NA	NA
1351289	1206734462	PD9774b	5	94676099	C	G	ENSG00000228715	ENST00000448077	r.?	-	-	upstream	35	0	0	48	5	10.41666667	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.551337634	0.655395899	0.841228386	0.0025	0.9975	0	0	2	4.47E-06	1	1	1	NA	NA	NA	NA
1351289	1206734591	PD9774b	5	96668252	C	G	-	-	-	-	-	-	24	0	0	34	5	14.70588235	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.778359013	0.925264798	0.841228386	0.00375	0.99625	0	0	2	7.71E-07	1	1	1	NA	NA	NA	NA
1351289	1206734592	PD9774b	5	96696696	C	G	-	-	-	-	-	-	37	0	0	53	11	20.75471698	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	1.09851423	1.09851423	1	0	1	0	0	2	3.07E-15	1	1	1	NA	NA	NA	NA
1351289	1206734810	PD9774b	5	99517808	C	G	-	-	-	-	-	-	37	0	0	38	8	21.05263158	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	1.114282377	1.114282377	1	0	0.99625	0.00375	0	2	1.67E-11	1	1	1	NA	NA	NA	NA
1351289	1206734928	PD9774b	5	100750444	C	G	-	-	-	-	-	-	34	0	0	40	5	12.5	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.661605161	0.786475079	0.841228386	0.00125	0.99875	0	0	2	1.78E-06	1	1	1	NA	NA	NA	NA
1351289	1206734979	PD9774b	5	101401480	A	G	-	-	-	-	-	-	39	0	0	47	9	19.14893617	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	1.0135228	1.0135228	1	0	1	0	0	2	2.24E-12	1	1	1	NA	NA	NA	NA
1351289	1206735085	PD9774b	5	102928691	C	G	-	-	-	-	-	-	29	0	0	57	12	21.05263158	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	1.114282377	1.114282377	1	0	0.99875	0.00125	0	2	1.40E-16	1	1	1	NA	NA	NA	NA
1351289	1206735114	PD9774b	5	103394594	A	G	-	-	-	-	-	-	47	0	0	42	8	19.04761905	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	1.008160246	1.008160246	1	0.00125	0.99875	0	0	2	3.96E-11	1	1	1	NA	NA	NA	NA
1351289	1206735388	PD9774b	5	106429939	C	G	-	-	-	-	-	-	37	0	0	47	13	27.65957447	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	1.463977378	1.463977378	1	0	0.9925	0.0075	0	2	1.47E-19	1	1	1	NA	NA	NA	NA
1351289	1206735480	PD9774b	5	107543666	C	G	FBXL17	ENST00000359660	r.?	-	-	intronic	39	0	0	45	7	15.55555556	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.823330867	0.978724542	0.841228386	0	0.99875	0.00125	0	2	3.00E-09	1	1	1	NA	NA	NA	NA
1351289	1206735675	PD9774b	5	110426348	T	G	WDR36	CCDS4102.1	r.?	-	-	upstream	42	0	0	33	4	12.12121212	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.64155652	0.762642501	0.841228386	0.0025	0.9975	0	0	2	2.28E-05	1	1	1	NA	NA	NA	NA
1351289	1206735686	PD9774b	5	110567225	A	G	CAMK4	CCDS4103.1	r.?	-	-	intronic	34	0	0	51	4	7.843137255	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.415124807	0.493474559	0.841228386	0.00625	0.99375	0	0	2	0.000129466	1	1	1	NA	NA	NA	NA
1351289	1206736135	PD9774b	5	117015977	C	G	-	-	-	-	-	-	35	0	0	48	6	12.5	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.661605161	0.786475079	0.841228386	0	1	0	0	2	1.60E-07	1	1	1	NA	NA	NA	NA
1351289	1206736252	PD9774b	5	118938281	A	G	-	-	-	-	-	-	35	0	0	49	8	16.32653061	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.864137353	1.027232756	0.841228386	0	1	0	0	2	1.47E-10	1	1	1	NA	NA	NA	NA
1351289	1206736717	PD9774b	5	125336118	C	G	-	-	-	-	-	-	46	0	0	58	9	15.51724138	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.821302959	0.976313891	0.841228386	0.00125	0.99875	0	0	2	1.67E-11	1	1	1	NA	NA	NA	NA
1351289	1206736804	PD9774b	5	126448046	A	G	-	-	-	-	-	-	46	0	0	42	6	14.28571429	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.756120184	0.898828661	0.841228386	0.00125	0.9975	0.00125	0	2	7.02E-08	1	1	1	NA	NA	NA	NA
1351289	1206736878	PD9774b	5	127714925	A	G	FBN2	CCDS34222.1	r.?	-	-	intronic	41	0	0	45	8	17.77777778	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.940949563	0.940949563	1	0	1	0	0	2	7.14E-11	1	1	1	NA	NA	NA	NA
1351289	1206736923	PD9774b	5	128340484	T	G	SLC27A6	CCDS4145.1	r.?	-	-	intronic	29	0	0	52	14	26.92307692	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	1.424995732	1.424995732	1	0	0.98875	0.01125	0	2	9.04E-21	1	1	1	NA	NA	NA	NA
1351289	1206737062	PD9774b	5	130738207	A	G	CDC42SE2	ENST00000502582	r.?	-	-	downstream	30	0	0	40	5	12.5	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.661605161	0.786475079	0.841228386	0	0.99875	0.00125	0	2	1.78E-06	1	1	1	NA	NA	NA	NA
1351289	1206737389	PD9774b	5	136030811	A	G	-	-	-	-	-	-	38	0	0	54	12	22.22222222	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	1.176186953	1.176186953	1	0	0.99875	0.00125	0	2	6.90E-17	1	1	1	NA	NA	NA	NA
1351289	1206737397	PD9774b	5	136150023	A	G	-	-	-	-	-	-	30	0	0	39	6	15.38461538	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.814283275	0.967969328	0.841228386	0.0025	0.9975	0	0	2	4.43E-08	1	1	1	NA	NA	NA	NA
1351289	1206737825	PD9774b	5	142540516	C	G	ARHGAP26	CCDS47297.1	r.?	-	-	intronic	30	0	0	50	7	14	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.740997781	0.880852088	0.841228386	0.00375	0.995	0.00125	0	2	6.46E-09	1	1	1	NA	NA	NA	NA
1351289	1206738000	PD9774b	5	145082803	C	G	-	-	-	-	-	-	38	0	0	40	9	22.5	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	1.19088929	1.19088929	1	0	0.99875	0.00125	0	2	4.64E-13	1	1	1	NA	NA	NA	NA
1351289	1206738437	PD9774b	5	151593976	A	G	-	-	-	-	-	-	38	0	0	54	7	12.96296296	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.686109056	0.815603785	0.841228386	0.00125	0.99875	0	0	2	1.13E-08	1	1	1	NA	NA	NA	NA
1351289	1206738494	PD9774b	5	152556683	A	G	-	-	-	-	-	-	41	0	0	40	6	15	0	0	NA	1	1	100	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.793926193	0.943770094	0.841228386	0.00125	0.9975	0.00125	0	2	5.18E-08	1	0.005	1	NA	NA	NA	NA
1351289	1206738525	PD9774b	5	152964054	C	G	GRIA1	CCDS4322.1	r.?	-	-	intronic	31	0	0	47	4	8.510638298	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.450454578	0.535472394	0.841228386	0.005	0.995	0	0	2	9.39E-05	1	1	1	NA	NA	NA	NA
1351289	1206738891	PD9774b	5	158081103	C	G	-	-	-	-	-	-	41	0	0	56	7	12.5	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.661605161	0.786475079	0.841228386	0.00125	0.9975	0.00125	0	2	1.46E-08	1	1	1	NA	NA	NA	NA
1351289	1206739111	PD9774b	5	160882388	A	G	GABRB2	CCDS4355.1	r.?	-	-	intronic	45	0	0	37	6	16.21621622	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.858298587	1.020291994	0.841228386	0.00125	0.9975	0.00125	0	2	3.18E-08	1	1	1	NA	NA	NA	NA
1351289	1206739380	PD9774b	5	165082284	C	G	-	-	-	-	-	-	25	0	0	48	4	8.333333333	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.441070107	0.524316719	0.841228386	0.005	0.995	0	0	2	0.000102016	1	1	1	NA	NA	NA	NA
1351289	1206739709	PD9774b	5	169718317	A	G	LCP2	CCDS47339.1	r.?	-	-	intronic	31	0	0	50	4	8	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.423427303	0.50334405	0.841228386	0.00375	0.99625	0	0	2	0.000119787	1	1	1	NA	NA	NA	NA
1351289	1206739985	PD9774b	5	173785811	T	G	-	-	-	-	-	-	36	0	0	43	4	9.302325581	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.492357329	0.585283779	0.841228386	0.0075	0.9925	0	0	2	6.60E-05	1	1	1	NA	NA	NA	NA
1351289	1206740103	PD9774b	5	175254068	C	G	CPLX2	CCDS4396.1	r.?	-	-	intronic	29	0	0	50	8	16	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.846854606	1.006688101	0.841228386	0	0.99875	0.00125	0	2	1.74E-10	1	1	1	NA	NA	NA	NA
1351289	1206740530	PD9774b	5	179502538	C	G	RNF130	CCDS4451.1	r.?	-	-	upstream	30	0	0	47	11	23.40425532	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	1.238750089	1.238750089	1	0	1	0	0	2	7.21E-16	1	1	1	NA	NA	NA	NA
1351289	1206741091	PD9774b	6	3980643	C	G	ENSG00000145965	ENST00000356722	r.?	-	-	upstream	42	0	0	64	10	15.625	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.851814516	0.851814516	1	0.00125	0.99875	0	0	2	1.16E-12	1	1	1	NA	NA	NA	NA
1351289	1206741098	PD9774b	6	4021606	C	G	PRPF4B	CCDS4488.1	r.47c>g	c.?	p.?	5'UTR variant	24	0	0	30	7	23.33333333	103	1	0.970873786	25	4	16	1	1	0	1	NA	NA	NA	unphased	1.272043011	1.272043011	1	0	0.99875	0.00125	0	2	1.44E-10	1	7.27E-06	0.403270763	NA	NA	NA	NA
1351289	1206741344	PD9774b	6	7079044	C	G	-	-	-	-	-	-	22	0	0	31	3	9.677419355	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.527575442	0.527575442	1	0.005	0.995	0	0	2	0.000505952	1	1	1	NA	NA	NA	NA
1351289	1206741648	PD9774b	6	10573470	C	G	GCNT2	CCDS34338.1	r.?	-	-	intronic	37	0	0	48	9	18.75	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.022177419	1.022177419	1	0.0025	0.9975	0	0	2	2.75E-12	1	1	1	NA	NA	NA	NA
1351289	1206741825	PD9774b	6	12998994	A	G	PHACTR1	ENST00000379350	r.?	-	-	intronic	40	0	0	43	12	27.90697674	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.521380345	1.521380345	1	0	0.9925	0.0075	0	2	3.24E-18	1	1	1	NA	NA	NA	NA
1351289	1206741948	PD9774b	6	14376163	C	G	-	-	-	-	-	-	38	0	0	35	10	28.57142857	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.557603687	1.557603687	1	0	0.99375	0.00625	0	2	1.60E-15	1	1	1	NA	NA	NA	NA
1351289	1206742063	PD9774b	6	15488865	C	G	JARID2	CCDS4533.1	r.?	-	-	intronic	32	0	0	52	7	13.46153846	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.733870968	0.733870968	1	0.00125	0.99875	0	0	2	8.58E-09	1	1	1	NA	NA	NA	NA
1351289	1206742465	PD9774b	6	19902246	T	G	-	-	-	-	-	-	28	0	0	53	8	15.09433962	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.822884967	0.822884967	1	0.0025	0.9975	0	0	2	2.83E-10	1	1	1	NA	NA	NA	NA
1351289	1206742511	PD9774b	6	20390245	A	G	-	-	-	-	-	-	37	0	0	44	6	13.63636364	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.74340176	0.74340176	1	0.0025	0.9975	0	0	2	9.37E-08	1	1	1	NA	NA	NA	NA
1351289	1206742652	PD9774b	6	21952127	C	G	-	-	-	-	-	-	33	0	0	54	6	11.11111111	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.605734767	0.605734767	1	0.0025	0.9975	0	0	2	3.29E-07	1	1	1	NA	NA	NA	NA
1351289	1206742892	PD9774b	6	24788319	A	G	GMNN	CCDS4560.1	r.?	-	-	downstream	53	0	0	53	9	16.98113208	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.925745587	0.925745587	1	0.0025	0.9975	0	0	2	7.10E-12	1	1	1	NA	NA	NA	NA
1351289	1206742921	PD9774b	6	25242790	A	G	-	-	-	-	-	-	38	0	0	33	8	24.24242424	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.321603128	1.321603128	1	0	0.9975	0.0025	0	2	4.85E-12	1	1	1	NA	NA	NA	NA
1351289	1206743142	PD9774b	6	27053528	T	G	-	-	-	-	-	-	37	0	0	48	10	20.83333333	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.135752688	1.135752688	1	0	0.9975	0.0025	0	2	5.37E-14	1	1	1	NA	NA	NA	NA
1351289	1206743332	PD9774b	6	29675450	T	G	-	-	-	-	-	-	28	0	0	38	4	10.52631579	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.57385399	0.57385399	1	0.005	0.995	0	0	2	4.03E-05	1	1	1	NA	NA	NA	NA
1351289	1206743532	PD9774b	6	30378415	T	G	-	-	-	-	-	-	30	0	0	54	13	24.07407407	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.312425329	1.312425329	1	0	0.99875	0.00125	0	2	1.12E-18	1	1	1	NA	NA	NA	NA
1351289	1206743615	PD9774b	6	31081592	A	G	CDSN	CCDS34389.1	r.?	-	-	downstream	29	0	0	32	6	18.75	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.022177419	1.022177419	1	0.00125	0.99875	0	0	2	1.27E-08	1	1	1	NA	NA	NA	NA
1351289	1206743969	PD9774b	6	33119064	C	G	-	-	-	-	-	-	23	0	0	39	5	12.82051282	0	0	NA	0	0	NA	0.816187611	0	0	0.183812389	1	0	0.816187611	unphased	0.67535904	0.827455638	0.816187611	0.00125	0.9975	0.00125	0	2	1.56E-06	1	1	1	NA	NA	NA	NA
1351289	1206743995	PD9774b	6	33393913	C	G	SYNGAP1	CCDS34434.2	r.?	-	-	intronic	33	0	0	15	3	20	0	0	NA	0	0	NA	0.816187611	0	0	0.183812389	1	0	0.816187611	unphased	1.053560103	1.053560103	1	0	0.99875	0.00125	0	2	5.44E-05	1	1	1	NA	NA	NA	NA
1351289	1206744443	PD9774b	6	39782473	C	G	DAAM2	ENST00000398904	r.?	-	-	intronic	32	0	0	44	6	13.63636364	0	0	NA	0	0	NA	0.816187611	0	0	0.183812389	1	0	0.816187611	unphased	0.718336434	0.880111905	0.816187611	0.00125	0.99875	0	0	2	9.37E-08	1	1	1	NA	NA	NA	NA
1351289	1206744599	PD9774b	6	42226201	C	G	TRERF1	CCDS4867.1	r.?	-	-	intronic	35	0	0	58	6	10.34482759	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.46051168	0.46051168	1	0.03	0.97	0	0	2	5.06E-07	1	1	1	NA	NA	NA	NA
1351289	1206744727	PD9774b	6	43754800	C	G	VEGFA	CCDS34458.1	r.?	-	-	downstream	25	0	0	45	6	13.33333333	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.593548387	0.593548387	1	0.00625	0.99375	0	0	2	1.08E-07	1	1	1	NA	NA	NA	NA
1351289	1206744915	PD9774b	6	46255784	C	G	RCAN2	CCDS43469.1	r.?	-	-	intronic	32	0	0	54	4	7.407407407	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.329749104	0.329749104	1	0.04875	0.95125	0	0	2	0.000161898	1	1	1	NA	NA	NA	NA
1351289	1206745242	PD9774b	6	51176550	A	G	-	-	-	-	-	-	24	0	0	55	5	9.090909091	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.404692082	0.404692082	1	0.045	0.955	0	0	2	8.83E-06	1	1	1	NA	NA	NA	NA
1351289	1206745355	PD9774b	6	52687408	C	G	-	-	-	-	-	-	28	0	0	49	5	10.20408163	0	0	NA	0	0	NA	1.592547364	1	0	0.407452636	1	1	0.592547364	unphased	0.616751048	1.040846833	0.592547364	0	1	0	0	2	4.96E-06	1	1	1	NA	NA	NA	NA
1351289	1206745395	PD9774b	6	53054370	C	G	-	-	-	-	-	-	46	0	0	54	4	7.407407407	0	0	NA	0	0	NA	1.592547364	1	0	0.407452636	1	1	0.592547364	unphased	0.447715575	0.755577701	0.592547364	0.00375	0.99625	0	0	2	0.000161898	1	1	1	NA	NA	NA	NA
1351289	1206745716	PD9774b	6	56942635	C	G	-	-	-	-	-	-	36	0	0	44	4	9.090909091	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.586510264	0.586510264	1	0.005	0.99375	0.00125	0	2	7.23E-05	1	1	1	NA	NA	NA	NA
1351289	1206745794	PD9774b	6	57273333	A	G	PRIM2	ENST00000425433	r.?	-	-	intronic	76	0	0	93	5	5.376344086	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.346860909	0.346860909	1	0.06125	0.93875	0	0	2	0.000112692	1	1	1	NA	NA	NA	NA
1351289	1206746740	PD9774b	6	62872628	C	G	KHDRBS2	CCDS4963.1	r.?	-	-	intronic	34	0	0	63	7	11.11111111	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.716845878	0.716845878	1	0.00375	0.99625	0	0	2	3.38E-08	1	1	1	NA	NA	NA	NA
1351289	1206746753	PD9774b	6	62992370	C	G	KHDRBS2	CCDS4963.1	r.?	-	-	intronic	31	0	0	61	7	11.47540984	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.740349022	0.740349022	1	0.005	0.995	0	0	2	2.69E-08	1	1	1	NA	NA	NA	NA
1351289	1206746906	PD9774b	6	64608971	A	G	EYS	CCDS47445.1	r.?	-	-	intronic	41	0	0	49	8	16.32653061	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.053324556	1.053324556	1	0.00125	0.99625	0.0025	0	2	1.47E-10	1	1	1	NA	NA	NA	NA
1351289	1206747009	PD9774b	6	65686452	C	G	EYS	CCDS47445.1	r.?	-	-	intronic	23	0	0	65	4	6.153846154	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.397022333	0.397022333	1	0.01625	0.98375	0	0	2	0.000331785	1	1	1	NA	NA	NA	NA
1351289	1206747055	PD9774b	6	66428815	A	G	-	-	-	-	-	-	35	0	0	48	6	12.5	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.806451613	0.806451613	1	0.00375	0.995	0.00125	0	2	1.60E-07	1	1	1	NA	NA	NA	NA
1351289	1206747192	PD9774b	6	67743995	A	G	-	-	-	-	-	-	41	0	0	69	11	15.94202899	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.028517999	1.028517999	1	0.00125	0.99875	0	0	2	6.82E-14	1	1	1	NA	NA	NA	NA
1351289	1206747287	PD9774b	6	68477704	C	G	-	-	-	-	-	-	24	0	0	39	7	17.94871795	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.157981803	1.157981803	1	0	1	0	0	2	1.04E-09	1	1	1	NA	NA	NA	NA
1351289	1206747581	PD9774b	6	71849500	C	G	-	-	-	-	-	-	38	0	0	65	4	6.153846154	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.397022333	0.397022333	1	0.015	0.985	0	0	2	0.000331785	1	1	1	NA	NA	NA	NA
1351289	1206747621	PD9774b	6	72271324	C	G	-	-	-	-	-	-	8	0	0	29	3	10.34482759	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.667408231	0.667408231	1	0.0025	0.99625	0.00125	0	2	0.000414371	1	1	1	NA	NA	NA	NA
1351289	1206747892	PD9774b	6	74969415	A	G	-	-	-	-	-	-	35	0	0	70	10	14.28571429	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.921658986	0.921658986	1	0	1	0	0	2	2.95E-12	1	1	1	NA	NA	NA	NA
1351289	1206747953	PD9774b	6	75758866	A	G	-	-	-	-	-	-	31	0	0	44	6	13.63636364	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.879765396	0.879765396	1	0.00125	0.99875	0	0	2	9.37E-08	1	1	1	NA	NA	NA	NA
1351289	1206748021	PD9774b	6	76516868	C	G	MYO6	CCDS34487.1	r.?	-	-	intronic	29	0	0	75	4	5.333333333	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.344086022	0.344086022	1	0.03375	0.96625	0	0	2	0.000572493	1	1	1	NA	NA	NA	NA
1351289	1206748023	PD9774b	6	76542004	A	G	MYO6	CCDS34487.1	r.?	-	-	intronic	39	0	0	44	6	13.63636364	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.879765396	0.879765396	1	0.00125	0.99875	0	0	2	9.37E-08	1	1	1	NA	NA	NA	NA
1351289	1206748024	PD9774b	6	76552910	T	G	MYO6	CCDS34487.1	r.?	-	-	intronic	28	0	0	54	4	7.407407407	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.477897252	0.477897252	1	0.01375	0.98625	0	0	2	0.000161898	1	1	1	NA	NA	NA	NA
1351289	1206748308	PD9774b	6	79857367	C	G	-	-	-	-	-	-	41	0	0	63	5	7.936507937	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.51203277	0.51203277	1	0.01	0.99	0	0	2	1.73E-05	1	1	1	NA	NA	NA	NA
1351289	1206748721	PD9774b	6	85023549	C	G	-	-	-	-	-	-	28	0	0	47	4	8.510638298	2	0	0	0	0	NA	1.628865241	1	0	0.371134759	1	1	0.628865241	unphased	0.517487502	0.822890927	0.628865241	0.005	0.995	0	0	2	9.39E-05	1	1	1	NA	NA	NA	NA
1351289	1206748748	PD9774b	6	85308597	A	G	-	-	-	-	-	-	31	0	0	64	6	9.375	0	0	NA	0	0	NA	1.628865241	1	0	0.371134759	1	1	0.628865241	unphased	0.570044826	0.906465787	0.628865241	0.0025	0.99625	0.00125	0	2	9.14E-07	1	1	1	NA	NA	NA	NA
1351289	1206748750	PD9774b	6	85342636	T	G	-	-	-	-	-	-	36	0	0	49	5	10.20408163	0	0	NA	0	0	NA	1.628865241	1	0	0.371134759	1	1	0.628865241	unphased	0.620456954	0.986629428	0.628865241	0.00125	0.99875	0	0	2	4.96E-06	1	1	1	NA	NA	NA	NA
1351289	1206748984	PD9774b	6	88506675	C	G	-	-	-	-	-	-	19	0	0	46	6	13.04347826	0	0	NA	0	0	NA	1.628865241	1	0	0.371134759	1	1	0.628865241	unphased	0.793105845	0.793105845	1	0.0025	0.9975	0	0	2	1.23E-07	1	1	1	NA	NA	NA	NA
1351289	1206749202	PD9774b	6	91196490	T	G	-	-	-	-	-	-	34	0	0	41	9	21.95121951	0	0	NA	0	0	NA	1.628865241	1	0	0.371134759	1	1	0.628865241	unphased	1.334739105	1.334739105	1	0	0.99375	0.00625	0	2	5.92E-13	1	1	1	NA	NA	NA	NA
1351289	1206749225	PD9774b	6	91437449	A	G	-	-	-	-	-	-	29	0	0	44	4	9.090909091	0	0	NA	0	0	NA	1.628865241	1	0	0.371134759	1	1	0.628865241	unphased	0.55277074	0.878997127	0.628865241	0.0025	0.9975	0	0	2	7.23E-05	1	1	1	NA	NA	NA	NA
1351289	1206749283	PD9774b	6	92662100	C	G	-	-	-	-	-	-	35	0	0	48	8	16.66666667	0	0	NA	0	0	NA	1.628865241	1	0	0.371134759	1	1	0.628865241	unphased	1.013413024	1.013413024	1	0.0025	0.9975	0	0	2	1.23E-10	1	1	1	NA	NA	NA	NA
1351289	1206749439	PD9774b	6	94714788	C	G	-	-	-	-	-	-	32	0	0	60	6	10	0	0	NA	0	0	NA	1.628865241	1	0	0.371134759	1	1	0.628865241	unphased	0.608047814	0.96689684	0.628865241	0.0025	0.9975	0	0	2	6.21E-07	1	1	1	NA	NA	NA	NA
1351289	1206749469	PD9774b	6	95068274	C	G	-	-	-	-	-	-	23	0	0	54	10	18.51851852	0	0	NA	0	0	NA	1.628865241	1	0	0.371134759	1	1	0.628865241	unphased	1.126014471	1.126014471	1	0	0.99875	0.00125	0	2	1.91E-13	1	1	1	NA	NA	NA	NA
1351289	1206749569	PD9774b	6	96936679	T	G	-	-	-	-	-	-	29	0	0	48	5	10.41666667	0	0	NA	0	0	NA	1.628865241	1	0	0.371134759	1	1	0.628865241	unphased	0.63338314	1.007184208	0.628865241	0.00125	0.99875	0	0	2	4.47E-06	1	1	1	NA	NA	NA	NA
1351289	1206749732	PD9774b	6	99161879	A	G	-	-	-	-	-	-	41	0	0	66	12	18.18181818	0	0	NA	0	0	NA	1.628865241	1	0	0.371134759	1	1	0.628865241	unphased	1.105541481	1.105541481	1	0	0.9975	0.0025	0	2	9.36E-16	1	1	1	NA	NA	NA	NA
1351289	1206749799	PD9774b	6	100154544	C	G	-	-	-	-	-	-	28	0	0	60	6	10	0	0	NA	0	0	NA	1.628865241	1	0	0.371134759	1	1	0.628865241	unphased	0.608047814	0.96689684	0.628865241	0.0025	0.9975	0	0	2	6.21E-07	1	1	1	NA	NA	NA	NA
1351289	1206749933	PD9774b	6	101925717	T	G	GRIK2	CCDS5049.1	r.?	-	-	intronic	42	0	0	65	5	7.692307692	0	0	NA	0	0	NA	1.628865241	1	0	0.371134759	1	1	0.628865241	unphased	0.467729088	0.7437668	0.628865241	0.0025	0.99625	0.00125	0	2	2.01E-05	1	1	1	NA	NA	NA	NA
1351289	1206750032	PD9774b	6	103185369	A	G	-	-	-	-	-	-	44	0	0	54	5	9.259259259	0	0	NA	0	0	NA	1.628865241	1	0	0.371134759	1	1	0.628865241	unphased	0.563007236	0.895274851	0.628865241	0.00125	0.99875	0	0	2	8.06E-06	1	1	1	NA	NA	NA	NA
1351289	1206750144	PD9774b	6	104293871	A	G	-	-	-	-	-	-	42	0	0	59	10	16.94915254	0	0	NA	0	0	NA	1.628865241	1	0	0.371134759	1	1	0.628865241	unphased	1.030589516	1.030589516	1	0	1	0	0	2	4.91E-13	1	1	1	NA	NA	NA	NA
1351289	1206750311	PD9774b	6	106620207	C	G	-	-	-	-	-	-	33	0	0	56	8	14.28571429	0	0	NA	0	0	NA	1.628865241	1	0	0.371134759	1	1	0.628865241	unphased	0.868639735	0.868639735	1	0	1	0	0	2	4.48E-10	1	1	1	NA	NA	NA	NA
1351289	1206750372	PD9774b	6	107337818	A	G	-	-	-	-	-	-	20	0	0	66	6	9.090909091	0	0	NA	0	0	NA	1.628865241	1	0	0.371134759	1	1	0.628865241	unphased	0.55277074	0.878997127	0.628865241	0.00375	0.995	0.00125	0	2	1.10E-06	1	1	1	NA	NA	NA	NA
1351289	1206750421	PD9774b	6	107883001	C	G	SOBP	CCDS43488.1	r.?	-	-	intronic	30	0	0	56	4	7.142857143	0	0	NA	0	0	NA	1.628865241	1	0	0.371134759	1	1	0.628865241	unphased	0.434319867	0.6906406	0.628865241	0.00875	0.99	0.00125	0	2	0.000186538	1	1	1	NA	NA	NA	NA
1351289	1206750474	PD9774b	6	108452011	C	G	OSTM1	ENST00000440575	r.?	-	-	intronic	35	0	0	55	5	9.090909091	0	0	NA	0	0	NA	1.628865241	1	0	0.371134759	1	1	0.628865241	unphased	0.55277074	0.878997127	0.628865241	0.00125	0.99875	0	0	2	8.83E-06	1	1	1	NA	NA	NA	NA
1351289	1206751033	PD9774b	6	115366996	A	G	-	-	-	-	-	-	42	0	0	63	15	23.80952381	0	0	NA	0	0	NA	1.628865241	1	0	0.371134759	1	1	0.628865241	unphased	1.447732892	1.447732892	1	0	0.99375	0.00625	0	2	2.97E-21	1	1	1	NA	NA	NA	NA
1351289	1206751071	PD9774b	6	115805557	C	G	-	-	-	-	-	-	38	0	0	56	5	8.928571429	0	0	NA	0	0	NA	1.628865241	1	0	0.371134759	1	1	0.628865241	unphased	0.542899834	0.86330075	0.628865241	0.00375	0.995	0.00125	0	2	9.65E-06	1	1	1	NA	NA	NA	NA
1351289	1206751119	PD9774b	6	116474668	A	G	NT5DC1	CCDS5104.1	r.?	-	-	intronic	36	0	0	73	6	8.219178082	0	0	NA	0	0	NA	1.628865241	1	0	0.371134759	1	1	0.628865241	unphased	0.499765327	0.794709731	0.628865241	0.005	0.995	0	0	2	2.00E-06	1	1	1	NA	NA	NA	NA
1351289	1206751151	PD9774b	6	116938139	C	G	RSPH4A	CCDS34521.1	r.490c>g	c.353C>G	p.P118R	missense	36	0	0	55	6	10.90909091	182	0	0	105	5	4.761904762	1.628865241	1	0	0.371134759	1	1	0.628865241	unphased	0.663324889	1.054796552	0.628865241	0	1	0	0	2	3.67E-07	1	0.000199261	1	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206751163	PD9774b	6	117193559	C	G	RFX6	CCDS5113.1	r.?	-	-	upstream	36	0	0	61	11	18.03278689	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.163405605	1.163405605	1	0	0.99875	0.00125	0	2	1.62E-14	1	1	1	NA	NA	NA	NA
1351289	1206751285	PD9774b	6	118590914	A	G	SLC35F1	CCDS34524.1	r.?	-	-	intronic	25	0	0	68	9	13.23529412	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.853889943	0.853889943	1	0.00125	0.99875	0	0	2	7.38E-11	1	1	1	NA	NA	NA	NA
1351289	1206751389	PD9774b	6	119780658	T	G	AL360215.1	ENST00000510677	r.?	-	-	intronic	35	0	0	63	9	14.28571429	2	0	0	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.921658986	0.921658986	1	0	0.99875	0.00125	0	2	3.62E-11	1	1	1	NA	NA	NA	NA
1351289	1206751441	PD9774b	6	120665190	T	G	-	-	-	-	-	-	39	0	0	61	6	9.836065574	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.634584876	0.634584876	1	0.00375	0.99625	0	0	2	6.85E-07	1	1	1	NA	NA	NA	NA
1351289	1206751454	PD9774b	6	120867905	A	G	-	-	-	-	-	-	36	0	0	55	10	18.18181818	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.173020528	1.173020528	1	0.00125	0.9975	0.00125	0	2	2.33E-13	1	1	1	NA	NA	NA	NA
1351289	1206751645	PD9774b	6	122712029	A	G	-	-	-	-	-	-	32	0	0	44	7	15.90909091	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.026392962	1.026392962	1	0	0.99625	0.00375	0	2	2.55E-09	1	1	1	NA	NA	NA	NA
1351289	1206751695	PD9774b	6	123246019	A	G	-	-	-	-	-	-	41	0	0	47	4	8.510638298	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.549073439	0.549073439	1	0.00375	0.99625	0	0	2	9.39E-05	1	1	1	NA	NA	NA	NA
1351289	1206751712	PD9774b	6	123571032	A	G	TRDN	ENST00000334268	r.?	-	-	intronic	28	0	0	57	7	12.28070175	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.792303339	0.792303339	1	0.00375	0.99625	0	0	2	1.66E-08	1	1	1	NA	NA	NA	NA
1351289	1206751729	PD9774b	6	123815233	C	G	TRDN	ENST00000334268	r.?	-	-	intronic	32	0	0	63	7	11.11111111	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.716845878	0.716845878	1	0	1	0	0	2	3.38E-08	1	1	1	NA	NA	NA	NA
1351289	1206751907	PD9774b	6	126215107	C	G	NCOA7	CCDS5132.1	r.?	-	-	intronic	26	0	0	48	7	14.58333333	0	0	NA	1	0	0	2	1	1	1	NA	NA	NA	unphased	0.940860215	0.940860215	1	0.00375	0.995	0.00125	0	2	4.81E-09	1	1	1	NA	NA	NA	NA
1351289	1206751951	PD9774b	6	127032878	A	G	-	-	-	-	-	-	43	0	0	58	12	20.68965517	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.334816463	1.334816463	1	0	0.9975	0.0025	0	2	1.76E-16	1	1	1	NA	NA	NA	NA
1351289	1206752184	PD9774b	6	130036998	C	G	-	-	-	-	-	-	43	0	0	57	6	10.52631579	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.679117148	0.679117148	1	0.0025	0.9975	0	0	2	4.56E-07	1	1	1	NA	NA	NA	NA
1351289	1206752196	PD9774b	6	130180365	A	G	C6orf191	CCDS34536.1	r.?	-	-	intronic	54	0	0	49	6	12.24489796	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.789993417	0.789993417	1	0	1	0	0	2	1.82E-07	1	1	1	NA	NA	NA	NA
1351289	1206752227	PD9774b	6	130514529	C	G	SAMD3	CCDS34539.1	r.?	-	-	intronic	36	0	0	52	5	9.615384615	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.620347395	0.620347395	1	0.00125	0.9975	0.00125	0	2	6.68E-06	1	1	1	NA	NA	NA	NA
1351289	1206752367	PD9774b	6	132281389	A	G	-	-	-	-	-	-	36	0	0	51	9	17.64705882	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.138519924	1.138519924	1	0	0.9975	0.0025	0	2	4.92E-12	1	1	1	NA	NA	NA	NA
1351289	1206752373	PD9774b	6	132321584	T	G	-	-	-	-	-	-	43	0	0	60	8	13.33333333	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.860215054	0.860215054	1	0.00125	0.99875	0	0	2	7.93E-10	1	1	1	NA	NA	NA	NA
1351289	1206752447	PD9774b	6	133357978	T	G	-	-	-	-	-	-	26	0	0	41	3	7.317073171	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.472069237	0.472069237	1	0.005	0.995	0	0	2	0.001155993	1	1	1	NA	NA	NA	NA
1351289	1206752634	PD9774b	6	135380184	C	G	HBS1L	CCDS5173.1	r.?	-	-	upstream	34	0	0	55	5	9.090909091	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.586510264	0.586510264	1	0.00625	0.99375	0	0	2	8.83E-06	1	1	1	NA	NA	NA	NA
1351289	1206752790	PD9774b	6	137304973	C	G	-	-	-	-	-	-	32	0	0	51	8	15.68627451	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.01201771	1.01201771	1	0	0.99875	0.00125	0	2	2.05E-10	1	1	1	NA	NA	NA	NA
1351289	1206752799	PD9774b	6	137370563	T	G	IL20RA	CCDS5181.1	r.?	-	-	upstream	39	0	0	57	8	14.03508772	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.90548953	0.90548953	1	0	1	0	0	2	5.19E-10	1	1	1	NA	NA	NA	NA
1351289	1206752886	PD9774b	6	138475530	A	G	-	-	-	-	-	-	54	0	0	41	7	17.07317073	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.101494886	1.101494886	1	0	1	0	0	2	1.51E-09	1	1	1	NA	NA	NA	NA
1351289	1206753015	PD9774b	6	139890616	T	G	-	-	-	-	-	-	32	0	0	60	7	11.66666667	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.752688172	0.752688172	1	0.0025	0.99625	0.00125	0	2	2.39E-08	1	1	1	NA	NA	NA	NA
1351289	1206753183	PD9774b	6	142539314	A	G	VTA1	CCDS5197.1	r.?	-	-	intronic	28	0	0	73	13	17.80821918	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.148917366	1.148917366	1	0	1	0	0	2	7.97E-17	1	1	1	NA	NA	NA	NA
1351289	1206753402	PD9774b	6	145777781	C	G	-	-	-	-	-	-	42	0	0	60	7	11.66666667	217	0	0	156	27	17.30769231	2	1	1	1	NA	NA	NA	unphased	0.752688172	0.752688172	1	0.00375	0.99625	0	0	2	2.39E-08	1	5.51E-33	1	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206753414	PD9774b	6	146014944	A	G	EPM2A	CCDS5206.1	r.?	-	-	intronic	30	0	0	53	12	22.64150943	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.460742544	1.460742544	1	0	0.98875	0.01125	0	2	5.39E-17	1	1	1	NA	NA	NA	NA
1351289	1206753432	PD9774b	6	146395365	T	G	GRM1	CCDS47497.1	r.?	-	-	intronic	25	0	0	59	5	8.474576271	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.546746856	0.546746856	1	0.01	0.99	0	0	2	1.25E-05	1	1	1	NA	NA	NA	NA
1351289	1206753433	PD9774b	6	146430034	T	G	GRM1	CCDS47497.1	r.?	-	-	intronic	27	0	0	68	15	22.05882353	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.423149905	1.423149905	1	0	0.9925	0.0075	0	2	1.06E-20	1	1	1	NA	NA	NA	NA
1351289	1206753913	PD9774b	6	151938855	A	G	C6orf97	CCDS43515.1	r.?	-	-	intronic	25	0	0	41	4	9.756097561	0	0	NA	0	0	NA	0.864122853	0	0	0.135877147	1	0	0.864122853	unphased	0.518608366	0.600155828	0.864122853	0.0075	0.9925	0	0	2	5.46E-05	1	1	1	NA	NA	NA	NA
1351289	1206753931	PD9774b	6	152290413	A	G	ESR1	CCDS5234.1	r.?	-	-	intronic	34	0	0	53	4	7.547169811	0	0	NA	2	0	0	0.864122853	0	0	0.135877147	1	0	0.864122853	unphased	0.401187604	0.46427149	0.864122853	0.00125	0.9975	0.00125	0	2	0.000150502	1	1	1	NA	NA	NA	NA
1351289	1206754020	PD9774b	6	153615481	A	G	-	-	-	-	-	-	55	0	0	38	6	15.78947368	0	0	NA	0	0	NA	0.864122853	0	0	0.135877147	1	0	0.864122853	unphased	0.839326698	0.971304827	0.864122853	0.0025	0.9975	0	0	2	3.76E-08	1	1	1	NA	NA	NA	NA
1351289	1206754142	PD9774b	6	154769959	C	G	CNKSR3	CCDS5246.1	r.?	-	-	intronic	40	0	0	34	6	17.64705882	0	0	NA	0	0	NA	0.864122853	0	0	0.135877147	1	0	0.864122853	unphased	0.938071016	0.938071016	1	0.00125	0.99875	0	0	2	1.86E-08	1	1	1	NA	NA	NA	NA
1351289	1206754174	PD9774b	6	155212896	C	G	-	-	-	-	-	-	27	0	0	38	4	10.52631579	0	0	NA	0	0	NA	0.864122853	0	0	0.135877147	1	0	0.864122853	unphased	0.559551132	0.647536551	0.864122853	0.005	0.995	0	0	2	4.03E-05	1	1	1	NA	NA	NA	NA
1351289	1206754564	PD9774b	6	159845160	C	G	-	-	-	-	-	-	34	0	0	62	4	6.451612903	0	0	NA	0	0	NA	0.864122853	0	0	0.135877147	1	0	0.864122853	unphased	0.342950694	0.396877241	0.864122853	0.015	0.985	0	0	2	0.000276647	1	1	1	NA	NA	NA	NA
1351289	1206754931	PD9774b	6	164892847	C	G	ENSG00000237744	ENST00000425920	r.?	-	-	intronic	34	0	0	42	6	14.28571429	0	0	NA	0	0	NA	0.864122853	0	0	0.135877147	1	0	0.864122853	unphased	0.759390822	0.878799605	0.864122853	0.0025	0.9975	0	0	2	7.02E-08	1	1	1	NA	NA	NA	NA
1351289	1206754965	PD9774b	6	165259029	T	G	-	-	-	-	-	-	33	0	0	58	4	6.896551724	0	0	NA	0	0	NA	0.864122853	0	0	0.135877147	1	0	0.864122853	unphased	0.366602466	0.424248085	0.864122853	0.00875	0.99125	0	0	2	0.000213772	1	1	1	NA	NA	NA	NA
1351289	1206754978	PD9774b	6	165543786	C	G	-	-	-	-	-	-	42	0	0	51	7	13.7254902	0	0	NA	0	0	NA	0.864122853	0	0	0.135877147	1	0	0.864122853	unphased	0.72961079	0.844336876	0.864122853	0	1	0	0	2	7.46E-09	1	1	1	NA	NA	NA	NA
1351289	1206755162	PD9774b	6	167810597	C	G	-	-	-	-	-	-	36	0	0	39	6	15.38461538	0	0	NA	0	0	NA	0.864122853	0	0	0.135877147	1	0	0.864122853	unphased	0.817805501	0.946399575	0.864122853	0.00125	0.9975	0.00125	0	2	4.43E-08	1	1	1	NA	NA	NA	NA
1351289	1206755742	PD9774b	7	966265	C	G	ADAP1	CCDS5318.1	r.449g>c	c.229G>C	p.G77R	missense	30	0	0	32	4	12.5	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.681451613	0.681451613	1	0.00375	0.995	0.00125	0	2	2.01E-05	1	1	1	NA	NA	NA	NA
1351289	1206756020	PD9774b	7	3770470	C	G	SDK1	CCDS34590.1	r.?	-	-	intronic	24	0	0	53	10	18.86792453	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.028606208	1.028606208	1	0	1	0	0	2	1.57E-13	1	1	1	NA	NA	NA	NA
1351289	1206756050	PD9774b	7	4247537	C	G	SDK1	CCDS34590.1	r.?	-	-	intronic	39	0	0	36	10	27.77777778	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.514336918	1.514336918	1	0	0.9875	0.0125	0	2	2.21E-15	1	1	1	NA	NA	NA	NA
1351289	1206756118	PD9774b	7	5199244	A	G	-	-	-	-	-	-	39	0	0	43	4	9.302325581	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.507126782	0.507126782	1	0.01	0.99	0	0	2	6.60E-05	1	1	1	NA	NA	NA	NA
1351289	1206756450	PD9774b	7	8221332	T	G	ICA1	CCDS34602.1	r.?	-	-	intronic	38	0	0	63	5	7.936507937	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.432667691	0.432667691	1	0.0175	0.9825	0	0	2	1.73E-05	1	1	1	NA	NA	NA	NA
1351289	1206756686	PD9774b	7	11880235	C	G	-	-	-	-	-	-	43	0	0	47	7	14.89361702	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.811942347	0.811942347	1	0	1	0	0	2	4.12E-09	1	1	1	NA	NA	NA	NA
1351289	1206756694	PD9774b	7	11957754	A	G	-	-	-	-	-	-	32	0	0	48	6	12.5	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.681451613	0.681451613	1	0.0025	0.9975	0	0	2	1.60E-07	1	1	1	NA	NA	NA	NA
1351289	1206757165	PD9774b	7	18262550	C	G	HDAC9	ENST00000433709	r.?	-	-	intronic	41	0	0	67	4	5.970149254	0	0	NA	2	0	0	2	2	0	1	NA	NA	NA	unphased	0.38517092	0.38517092	1	0.03	0.97	0	0	2	0.000372648	1	1	1	NA	NA	NA	NA
1351289	1206757258	PD9774b	7	19931808	A	G	-	-	-	-	-	-	26	0	0	41	5	12.19512195	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.664830842	0.664830842	1	0	0.99875	0.00125	0	2	2.02E-06	1	1	1	NA	NA	NA	NA
1351289	1206757682	PD9774b	7	25492497	A	G	-	-	-	-	-	-	40	0	0	51	9	17.64705882	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.962049336	0.962049336	1	0	0.99875	0.00125	0	2	4.92E-12	1	1	1	NA	NA	NA	NA
1351289	1206757924	PD9774b	7	28914962	C	G	-	-	-	-	-	-	34	0	0	66	5	7.575757576	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.413000978	0.413000978	1	0.02625	0.97375	0	0	2	2.17E-05	1	1	1	NA	NA	NA	NA
1351289	1206757967	PD9774b	7	29292729	A	G	CHN2	CCDS5420.1	r.?	-	-	intronic	36	0	0	52	6	11.53846154	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.629032258	0.629032258	1	0.00625	0.99375	0	0	2	2.61E-07	1	1	1	NA	NA	NA	NA
1351289	1206758160	PD9774b	7	31721687	A	G	C7orf16	CCDS5436.1	r.?	-	-	upstream	45	0	0	35	4	11.42857143	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.623041475	0.623041475	1	0.00625	0.99375	0	0	2	2.89E-05	1	1	1	NA	NA	NA	NA
1351289	1206758488	PD9774b	7	35312109	A	G	-	-	-	-	-	-	44	0	0	43	10	23.25581395	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.267816954	1.267816954	1	0	0.9975	0.0025	0	2	1.61E-14	1	1	1	NA	NA	NA	NA
1351289	1206758882	PD9774b	7	40691835	C	G	C7orf10	ENST00000309930	r.?	-	-	intronic	46	0	0	44	6	13.63636364	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.74340176	0.74340176	1	0.00625	0.99375	0	0	2	9.37E-08	1	1	1	NA	NA	NA	NA
1351289	1206758907	PD9774b	7	41076425	C	G	-	-	-	-	-	-	28	0	0	59	10	16.94915254	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.924002187	0.924002187	1	0.00125	0.99875	0	0	2	4.91E-13	1	1	1	NA	NA	NA	NA
1351289	1206758918	PD9774b	7	41129720	C	G	-	-	-	-	-	-	35	0	0	70	5	7.142857143	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.389400922	0.389400922	1	0.02375	0.97625	0	0	2	2.89E-05	1	1	1	NA	NA	NA	NA
1351289	1206759178	PD9774b	7	44501697	C	G	NUDCD3	CCDS5490.2	r.?	-	-	intronic	29	0	0	45	5	11.11111111	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.605734767	0.605734767	1	0.00375	0.99625	0	0	2	3.23E-06	1	1	1	NA	NA	NA	NA
1351289	1206759483	PD9774b	7	48274265	C	G	ABCA13	CCDS47584.1	r.?	-	-	intronic	36	0	0	52	4	7.692307692	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.419354839	0.419354839	1	0.02	0.98	0	0	2	0.000139698	1	1	1	NA	NA	NA	NA
1351289	1206759485	PD9774b	7	48324950	T	G	ABCA13	CCDS47584.1	r.?	-	-	intronic	41	0	0	58	8	13.79310345	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.751946607	0.751946607	1	0.00125	0.99875	0	0	2	5.99E-10	1	1	1	NA	NA	NA	NA
1351289	1206759501	PD9774b	7	48780870	C	G	-	-	-	-	-	-	41	0	0	43	9	20.93023256	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.141035259	1.141035259	1	0	0.9975	0.0025	0	2	9.45E-13	1	1	1	NA	NA	NA	NA
1351289	1206759520	PD9774b	7	48976619	C	G	-	-	-	-	-	-	43	0	0	48	6	12.5	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.681451613	0.681451613	1	0.005	0.995	0	0	2	1.60E-07	1	1	1	NA	NA	NA	NA
1351289	1206759581	PD9774b	7	49770766	A	G	-	-	-	-	-	-	38	0	0	45	7	15.55555556	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.848028674	0.848028674	1	0.00125	0.99875	0	0	2	3.00E-09	1	1	1	NA	NA	NA	NA
1351289	1206759765	PD9774b	7	52037576	A	G	-	-	-	-	-	-	40	0	0	51	7	13.7254902	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.748260595	0.748260595	1	0.005	0.995	0	0	2	7.46E-09	1	1	1	NA	NA	NA	NA
1351289	1206759837	PD9774b	7	52818913	T	G	-	-	-	-	-	-	32	0	0	50	4	8	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.436129032	0.436129032	1	0.015	0.985	0	0	2	0.000119787	1	1	1	NA	NA	NA	NA
1351289	1206760317	PD9774b	7	56748085	A	G	-	-	-	-	-	-	30	0	0	48	8	16.66666667	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.908602151	0.908602151	1	0	1	0	0	2	1.23E-10	1	1	1	NA	NA	NA	NA
1351289	1206767070	PD9774b	7	65583741	C	G	CRCP	CCDS5532.1	r.?	-	-	intronic	30	0	0	55	4	7.272727273	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.469208211	0.469208211	1	0.01	0.99	0	0	2	0.000173903	1	1	1	NA	NA	NA	NA
1351289	1206767556	PD9774b	7	69799804	C	G	AUTS2	CCDS5539.1	r.?	-	-	intronic	35	0	0	53	4	7.547169811	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.486914181	0.486914181	1	0.0075	0.9925	0	0	2	0.000150502	1	1	1	NA	NA	NA	NA
1351289	1206767721	PD9774b	7	71132944	T	G	WBSCR17	CCDS5540.1	r.?	-	-	intronic	29	0	0	44	10	22.72727273	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.46627566	1.46627566	1	0.00125	0.9925	0.00625	0	2	2.08E-14	1	1	1	NA	NA	NA	NA
1351289	1206767761	PD9774b	7	71319201	A	G	CALN1	CCDS47603.1	r.?	-	-	intronic	29	0	0	45	8	17.77777778	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.146953405	1.146953405	1	0	0.99625	0.00375	0	2	7.14E-11	1	1	1	NA	NA	NA	NA
1351289	1206768267	PD9774b	7	75716853	A	G	AC006330.1	ENST00000514862	r.?	-	-	intronic	39	0	0	58	7	12.06896552	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.778642937	0.778642937	1	0.0025	0.9975	0	0	2	1.88E-08	1	1	1	NA	NA	NA	NA
1351289	1206768337	PD9774b	7	76457977	A	G	-	-	-	-	-	-	42	0	0	67	5	7.462686567	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.481463649	0.481463649	1	0.02125	0.97875	0	0	2	2.33E-05	1	1	1	NA	NA	NA	NA
1351289	1206768417	PD9774b	7	77156577	C	G	-	-	-	-	-	-	42	0	0	47	5	10.63829787	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.686341798	0.686341798	1	0.005	0.995	0	0	2	4.02E-06	1	1	1	NA	NA	NA	NA
1351289	1206768473	PD9774b	7	77832839	C	G	MAGI2	CCDS5594.1	r.?	-	-	intronic	38	0	0	58	6	10.34482759	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.667408231	0.667408231	1	0	1	0	0	2	5.06E-07	1	1	1	NA	NA	NA	NA
1351289	1206768828	PD9774b	7	81954920	T	G	CACNA2D1	CCDS5598.1	r.?	-	-	intronic	36	0	0	43	5	11.62790698	198	0	0	275	29	10.54545455	2	1	1	1	NA	NA	NA	unphased	0.750187547	0.750187547	1	0	1	0	0	2	2.57E-06	1	7.63E-29	1	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206768881	PD9774b	7	82561672	T	G	PCLO	CCDS47630.1	r.?	-	-	intronic	34	0	0	65	4	6.153846154	0	0	NA	0	0	NA	2.765129909	1	1	0.234870091	2	1	0.765129909	unphased	0.44410725	0.580433786	0.765129909	0.00625	0.99375	0	0	2	0.000331785	1	1	1	NA	NA	NA	NA
1351289	1206768980	PD9774b	7	83251731	A	G	SEMA3E	CCDS34674.1	r.?	-	-	intronic	36	0	0	54	5	9.259259259	0	0	NA	0	0	NA	2.765129909	1	1	0.234870091	2	1	0.765129909	unphased	0.668216927	0.873337873	0.765129909	0	1	0	0	2	8.06E-06	1	1	1	NA	NA	NA	NA
1351289	1206769039	PD9774b	7	83943418	C	G	SEMA3A	ENST00000424555	r.?	-	-	intronic	44	0	0	61	9	14.75409836	0	0	NA	0	0	NA	2.765129909	1	1	0.234870091	2	1	0.765129909	unphased	1.064765333	1.064765333	1	0	0.9975	0.0025	0	2	2.68E-11	1	1	1	NA	NA	NA	NA
1351289	1206769080	PD9774b	7	84659316	A	G	SEMA3D	CCDS34676.1	r.?	-	-	intronic	27	0	0	66	6	9.090909091	0	0	NA	0	0	NA	1.850213785	1	0	0.149786215	1	1	0.850213785	unphased	0.572893335	0.673822685	0.850213785	0.00375	0.99625	0	0	2	1.10E-06	1	1	1	NA	NA	NA	NA
1351289	1206769260	PD9774b	7	87004543	C	G	CROT	CCDS5604.1	r.?	-	-	intronic	44	0	0	36	5	13.88888889	0	0	NA	0	0	NA	1.850213785	1	0	0.149786215	1	1	0.850213785	unphased	0.875253707	1.029451324	0.850213785	0	1	0	0	2	1.04E-06	1	1	1	NA	NA	NA	NA
1351289	1206769268	PD9774b	7	87175078	T	G	ABCB1	CCDS5608.1	r.?	-	-	intronic	39	0	0	67	7	10.44776119	0	0	NA	0	0	NA	1.850213785	1	0	0.149786215	1	1	0.850213785	unphased	0.658399803	0.774393235	0.850213785	0.0025	0.9975	0	0	2	5.23E-08	1	1	1	NA	NA	NA	NA
1351289	1206769415	PD9774b	7	89341767	C	G	-	-	-	-	-	-	26	0	0	44	6	13.63636364	0	0	NA	0	0	NA	1.850213785	1	0	0.149786215	1	1	0.850213785	unphased	0.859340003	1.010734028	0.850213785	0	0.99875	0.00125	0	2	9.37E-08	1	1	1	NA	NA	NA	NA
1351289	1206769618	PD9774b	7	92039067	A	G	-	-	-	-	-	-	40	0	0	51	5	9.803921569	0	0	NA	0	0	NA	1.850213785	1	0	0.149786215	1	1	0.850213785	unphased	0.617826146	0.726671523	0.850213785	0.00375	0.995	0.00125	0	2	6.06E-06	1	1	1	NA	NA	NA	NA
1351289	1206769724	PD9774b	7	93877771	C	G	-	-	-	-	-	-	25	0	0	48	10	20.83333333	0	0	NA	0	0	NA	1.850213785	1	0	0.149786215	1	1	0.850213785	unphased	1.31288056	1.31288056	1	0	0.9975	0.0025	0	2	5.37E-14	1	1	1	NA	NA	NA	NA
1351289	1206769846	PD9774b	7	95959814	A	G	-	-	-	-	-	-	34	0	0	51	7	13.7254902	165	0	0	166	6	3.614457831	1.850213785	1	0	0.149786215	1	1	0.850213785	unphased	0.864956604	1.017340132	0.850213785	0	1	0	0	2	7.46E-09	1	0.000209524	1	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206770048	PD9774b	7	98218619	C	G	-	-	-	-	-	-	36	0	0	53	4	7.547169811	0	0	NA	0	0	NA	1.850213785	1	0	0.149786215	1	1	0.850213785	unphased	0.475609561	0.559399965	0.850213785	0.0025	0.9975	0	0	2	0.000150502	1	1	1	NA	NA	NA	NA
1351289	1206770381	PD9774b	7	100926460	A	G	-	-	-	-	-	-	27	0	0	51	8	15.68627451	0	0	NA	0	0	NA	1.850213785	1	0	0.149786215	1	1	0.850213785	unphased	0.988521833	0.988521833	1	0.00125	0.99875	0	0	2	2.05E-10	1	1	1	NA	NA	NA	NA
1351289	1206770442	PD9774b	7	101521765	C	G	CUX1	CCDS5721.1	r.?	-	-	intronic	29	0	0	46	5	10.86956522	0	0	NA	0	0	NA	1.850213785	1	0	0.149786215	1	1	0.850213785	unphased	0.684981162	0.805657558	0.850213785	0.005	0.995	0	0	2	3.61E-06	1	1	1	NA	NA	NA	NA
1351289	1206770452	PD9774b	7	101584836	C	G	CUX1	CCDS5721.1	r.?	-	-	intronic	33	0	0	43	7	16.27906977	0	0	NA	0	0	NA	1.850213785	1	0	0.149786215	1	1	0.850213785	unphased	1.025878763	1.025878763	1	0.00125	0.99875	0	0	2	2.15E-09	1	1	1	NA	NA	NA	NA
1351289	1206770994	PD9774b	7	106578338	T	G	-	-	-	-	-	-	40	0	0	50	9	18	0	0	NA	0	0	NA	1.850213785	1	0	0.149786215	1	1	0.850213785	unphased	1.134328804	1.134328804	1	0	1	0	0	2	4.07E-12	1	1	1	NA	NA	NA	NA
1351289	1206771024	PD9774b	7	106871497	T	G	COG5	CCDS5743.1	r.?	-	-	intronic	29	0	0	38	4	10.52631579	0	0	NA	0	0	NA	1.850213785	1	0	0.149786215	1	1	0.850213785	unphased	0.663350178	0.780215741	0.850213785	0.00375	0.99625	0	0	2	4.03E-05	1	1	1	NA	NA	NA	NA
1351289	1206771025	PD9774b	7	106885924	C	G	COG5	CCDS5743.1	r.?	-	-	intronic	36	0	0	60	6	10	0	0	NA	0	0	NA	1.850213785	1	0	0.149786215	1	1	0.850213785	unphased	0.630182669	0.741204954	0.850213785	0.0025	0.9975	0	0	2	6.21E-07	1	1	1	NA	NA	NA	NA
1351289	1206771056	PD9774b	7	107268517	T	G	BCAP29	ENST00000379121	r.?	-	-	intronic	33	0	0	58	4	6.896551724	0	0	NA	0	0	NA	1.850213785	1	0	0.149786215	1	1	0.850213785	unphased	0.434608737	0.51117583	0.850213785	0.00375	0.99625	0	0	2	0.000213772	1	1	1	NA	NA	NA	NA
1351289	1206771087	PD9774b	7	107639263	C	G	LAMB1	CCDS5750.1	r.?	-	-	intronic	30	0	0	53	4	7.547169811	0	0	NA	0	0	NA	1.850213785	1	0	0.149786215	1	1	0.850213785	unphased	0.475609561	0.559399965	0.850213785	0	1	0	0	2	0.000150502	1	1	1	NA	NA	NA	NA
1351289	1206771144	PD9774b	7	108395007	A	G	-	-	-	-	-	-	43	0	0	65	7	10.76923077	0	0	NA	0	0	NA	1.850213785	1	0	0.149786215	1	1	0.850213785	unphased	0.678658259	0.798220719	0.850213785	0	1	0	0	2	4.22E-08	1	1	1	NA	NA	NA	NA
1351289	1206771515	PD9774b	7	113553507	C	G	PPP1R3A	CCDS5759.1	r.?	-	-	intronic	36	0	0	49	10	20.40816327	0	0	NA	0	0	NA	1.850213785	1	0	0.149786215	1	1	0.850213785	unphased	1.286087079	1.286087079	1	0.00125	0.99375	0.005	0	2	6.72E-14	1	1	1	NA	NA	NA	NA
1351289	1206771691	PD9774b	7	115633212	C	G	TFEC	CCDS5762.1	r.?	-	-	intronic	36	0	0	49	6	12.24489796	0	0	NA	0	0	NA	1.850213785	1	0	0.149786215	1	1	0.850213785	unphased	0.771652248	0.907597902	0.850213785	0.00375	0.99625	0	0	2	1.82E-07	1	1	1	NA	NA	NA	NA
1351289	1206771719	PD9774b	7	115945803	T	G	-	-	-	-	-	-	41	0	0	52	8	15.38461538	0	0	NA	0	0	NA	1.850213785	1	0	0.149786215	1	1	0.850213785	unphased	0.969511798	0.969511798	1	0	0.99875	0.00125	0	2	2.42E-10	1	1	1	NA	NA	NA	NA
1351289	1206771943	PD9774b	7	118900882	A	G	-	-	-	-	-	-	34	0	0	51	4	7.843137255	0	0	NA	0	0	NA	1.850213785	1	0	0.149786215	1	1	0.850213785	unphased	0.494260917	0.581337218	0.850213785	0	1	0	0	2	0.000129466	1	1	1	NA	NA	NA	NA
1351289	1206771965	PD9774b	7	119190456	A	G	-	-	-	-	-	-	47	0	0	46	8	17.39130435	0	0	NA	0	0	NA	1.850213785	1	0	0.149786215	1	1	0.850213785	unphased	1.095969859	1.095969859	1	0	0.99875	0.00125	0	2	8.61E-11	1	1	1	NA	NA	NA	NA
1351289	1206772047	PD9774b	7	120857255	A	G	C7orf58	CCDS34739.1	r.?	-	-	intronic	38	0	0	36	4	11.11111111	0	0	NA	0	0	NA	1.850213785	1	0	0.149786215	1	1	0.850213785	unphased	0.700202965	0.823561059	0.850213785	0.00125	0.99875	0	0	2	3.24E-05	1	1	1	NA	NA	NA	NA
1351289	1206772130	PD9774b	7	122017433	C	G	CADPS2	CCDS47691.1	r.?	-	-	intronic	36	0	0	58	4	6.896551724	0	0	NA	0	0	NA	1.850213785	1	0	0.149786215	1	1	0.850213785	unphased	0.434608737	0.51117583	0.850213785	0.00875	0.99125	0	0	2	0.000213772	1	1	1	NA	NA	NA	NA
1351289	1206772259	PD9774b	7	123956112	C	G	-	-	-	-	-	-	37	0	0	52	8	15.38461538	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.992555831	0.992555831	1	0	1	0	0	2	2.42E-10	1	1	1	NA	NA	NA	NA
1351289	1206772260	PD9774b	7	123957312	T	G	-	-	-	-	-	-	40	0	0	52	5	9.615384615	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.620347395	0.620347395	1	0.00625	0.99375	0	0	2	6.68E-06	1	1	1	NA	NA	NA	NA
1351289	1206772328	PD9774b	7	124634039	A	G	-	-	-	-	-	-	40	0	0	51	4	7.843137255	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.506008855	0.506008855	1	0.005	0.995	0	0	2	0.000129466	1	1	1	NA	NA	NA	NA
1351289	1206772538	PD9774b	7	126791948	T	G	GRM8	CCDS5794.1	r.?	-	-	intronic	38	0	0	42	4	9.523809524	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.614439324	0.614439324	1	0.00375	0.99625	0	0	2	6.01E-05	1	1	1	NA	NA	NA	NA
1351289	1206772608	PD9774b	7	127745929	T	G	-	-	-	-	-	-	41	0	0	64	8	12.5	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.806451613	0.806451613	1	0.00125	0.99875	0	0	2	1.35E-09	1	1	1	NA	NA	NA	NA
1351289	1206772896	PD9774b	7	130261799	C	G	-	-	-	-	-	-	30	0	0	48	8	16.66666667	0	0	NA	1	0	0	2	1	1	1	NA	NA	NA	unphased	1.075268817	1.075268817	1	0.00375	0.995	0.00125	0	2	1.23E-10	1	1	1	NA	NA	NA	NA
1351289	1206772919	PD9774b	7	130515877	C	G	-	-	-	-	-	-	50	0	0	47	5	10.63829787	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.686341798	0.686341798	1	0.0025	0.9975	0	0	2	4.02E-06	1	1	1	NA	NA	NA	NA
1351289	1206772931	PD9774b	7	130649567	C	G	-	-	-	-	-	-	36	0	0	60	4	6.666666667	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.430107527	0.430107527	1	0.0125	0.9875	0	0	2	0.000243755	1	1	1	NA	NA	NA	NA
1351289	1206773009	PD9774b	7	131536538	A	G	-	-	-	-	-	-	29	0	0	50	7	14	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.903225806	0.903225806	1	0.0025	0.99625	0.00125	0	2	6.46E-09	1	1	1	NA	NA	NA	NA
1351289	1206773106	PD9774b	7	132783748	C	G	-	-	-	-	-	-	38	0	0	64	9	14.0625	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.907258065	0.907258065	1	0.00125	0.9975	0.00125	0	2	4.20E-11	1	1	1	NA	NA	NA	NA
1351289	1206773227	PD9774b	7	134316587	C	G	-	-	-	-	-	-	41	0	0	72	9	12.5	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.806451613	0.806451613	1	0.00125	0.99875	0	0	2	1.25E-10	1	1	1	NA	NA	NA	NA
1351289	1206773304	PD9774b	7	135277990	C	G	NUP205	CCDS34759.1	r.?	-	-	intronic	43	0	0	43	6	13.95348837	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.900225056	0.900225056	1	0.00125	0.99875	0	0	2	8.13E-08	1	1	1	NA	NA	NA	NA
1351289	1206773310	PD9774b	7	135339705	C	G	-	-	-	-	-	-	41	0	0	53	8	15.09433962	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.973828363	0.973828363	1	0.00125	0.9975	0.00125	0	2	2.83E-10	1	1	1	NA	NA	NA	NA
1351289	1206773542	PD9774b	7	138061623	A	G	-	-	-	-	-	-	33	0	0	48	5	10.41666667	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.672043011	0.672043011	1	0	1	0	0	2	4.47E-06	1	1	1	NA	NA	NA	NA
1351289	1206773700	PD9774b	7	139373649	T	G	HIPK2	ENST00000406875	r.?	-	-	intronic	40	0	0	59	9	15.25423729	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.984144341	0.984144341	1	0	1	0	0	2	1.96E-11	1	1	1	NA	NA	NA	NA
1351289	1206773828	PD9774b	7	140932611	A	G	-	-	-	-	-	-	25	0	0	58	5	8.620689655	0	0	NA	0	0	NA	2.743963828	1	1	0.256036172	2	1	0.743963828	unphased	0.620308339	0.833788305	0.743963828	0.00125	0.99875	0	0	2	1.15E-05	1	1	1	NA	NA	NA	NA
1351289	1206774138	PD9774b	7	142461309	A	G	PRSS2	CCDS5872.1	r.?	-	-	downstream	32	0	0	54	7	12.96296296	0	0	NA	1	0	0	2.743963828	1	1	0.256036172	2	1	0.743963828	unphased	0.932759947	0.932759947	1	0.00375	0.99625	0	0	2	1.13E-08	1	1	1	NA	NA	NA	NA
1351289	1206774304	PD9774b	7	143504726	A	G	-	-	-	-	-	-	8	0	0	25	5	20	0	0	NA	0	0	NA	2.743963828	1	1	0.256036172	2	1	0.743963828	unphased	1.439115346	1.439115346	1	0.00125	0.99625	0.0025	0	2	1.53E-07	1	1	1	NA	NA	NA	NA
1351289	1206774415	PD9774b	7	144946909	T	G	-	-	-	-	-	-	40	0	0	58	9	15.51724138	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.001112347	1.001112347	1	0.00125	0.99875	0	0	2	1.67E-11	1	1	1	NA	NA	NA	NA
1351289	1206774485	PD9774b	7	145885222	C	G	CNTNAP2	CCDS5889.1	r.?	-	-	intronic	43	0	0	55	5	9.090909091	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.586510264	0.586510264	1	0.005	0.995	0	0	2	8.83E-06	1	1	1	NA	NA	NA	NA
1351289	1206774773	PD9774b	7	148820610	C	G	ZNF398	CCDS47739.1	r.?	-	-	intronic	23	0	0	45	7	15.55555556	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.003584229	1.003584229	1	0.0025	0.9975	0	0	2	3.00E-09	1	1	1	NA	NA	NA	NA
1351289	1206774922	PD9774b	7	149909797	T	G	-	-	-	-	-	-	33	0	0	67	12	17.91044776	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.155512759	1.155512759	1	0	0.99875	0.00125	0	2	1.14E-15	1	1	1	NA	NA	NA	NA
1351289	1206775712	PD9774b	7	152655490	T	G	-	-	-	-	-	-	35	0	0	52	5	9.615384615	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.620347395	0.620347395	1	0.00375	0.99625	0	0	2	6.68E-06	1	1	1	NA	NA	NA	NA
1351289	1206776028	PD9774b	7	155336342	C	G	-	-	-	-	-	-	34	0	0	60	9	15	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.967741935	0.967741935	1	0	0.99875	0.00125	0	2	2.29E-11	1	1	1	NA	NA	NA	NA
1351289	1206776108	PD9774b	7	155990795	T	G	-	-	-	-	-	-	30	0	0	62	11	17.74193548	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.144640999	1.144640999	1	0	0.99875	0.00125	0	2	1.96E-14	1	1	1	NA	NA	NA	NA
1351289	1206777237	PD9774b	8	2354178	C	G	-	-	-	-	-	-	38	0	0	54	4	7.407407407	0	0	NA	0	0	NA	1.490411309	1	0	0.509588691	2	0	0.490411309	unphased	0.440149942	0.89751181	0.490411309	0.00125	0.9975	0.00125	0	2	0.000161898	1	1	1	NA	NA	NA	NA
1351289	1206777241	PD9774b	8	2408957	C	G	-	-	-	-	-	-	34	0	0	48	7	14.58333333	0	0	NA	0	0	NA	1.490411309	1	0	0.509588691	2	0	0.490411309	unphased	0.866545198	0.866545198	1	0.00125	0.99875	0	0	2	4.81E-09	1	1	1	NA	NA	NA	NA
1351289	1206777243	PD9774b	8	2435545	A	G	-	-	-	-	-	-	25	0	0	68	10	14.70588235	1	0	0	0	0	NA	1.490411309	1	0	0.509588691	2	0	0.490411309	unphased	0.87382709	0.87382709	1	0.00125	0.99875	0	0	2	2.18E-12	1	1	1	NA	NA	NA	NA
1351289	1206777384	PD9774b	8	3931450	C	G	-	-	-	-	-	-	33	0	0	65	6	9.230769231	0	0	NA	0	0	NA	1.490411309	1	0	0.509588691	2	0	0.490411309	unphased	0.548494543	1.118437795	0.490411309	0.00125	0.9975	0.00125	0	2	1.00E-06	1	1	1	NA	NA	NA	NA
1351289	1206777438	PD9774b	8	4469280	C	G	-	-	-	-	-	-	35	0	0	52	9	17.30769231	0	0	NA	0	0	NA	1.490411309	1	0	0.509588691	2	0	0.490411309	unphased	1.028427267	1.028427267	1	0.00125	0.99625	0.0025	0	2	5.92E-12	1	1	1	NA	NA	NA	NA
1351289	1206777596	PD9774b	8	6171207	C	G	-	-	-	-	-	-	29	0	0	58	13	22.4137931	0	0	NA	0	0	NA	1.490411309	1	0	0.509588691	2	0	0.490411309	unphased	1.331833013	1.331833013	1	0	0.99875	0.00125	0	2	3.12E-18	1	1	1	NA	NA	NA	NA
1351289	1206777641	PD9774b	8	6540511	A	G	-	-	-	-	-	-	42	0	0	61	5	8.196721311	0	0	NA	0	0	NA	1.490411309	1	0	0.509588691	2	0	0.490411309	unphased	0.487051165	0.993148315	0.490411309	0	1	0	0	2	1.47E-05	1	1	1	NA	NA	NA	NA
1351289	1206777721	PD9774b	8	7206665	T	G	-	-	-	-	-	-	35	0	0	49	12	24.48979592	0	0	NA	0	0	NA	1.490411309	1	0	0.509588691	2	0	0.490411309	unphased	1.455189603	1.455189603	1	0	0.99375	0.00625	0	2	1.90E-17	1	1	1	NA	NA	NA	NA
1351289	1206777980	PD9774b	8	9280458	C	G	-	-	-	-	-	-	25	0	0	47	18	38.29787234	0	0	NA	0	0	NA	1.490411309	1	0	0.509588691	2	0	0.490411309	unphased	2.275668847	1.526873041	1.490411309	0	0.97125	0.02875	0	2	1.52E-29	1	1	1	NA	NA	NA	NA
1351289	1206777991	PD9774b	8	9402723	C	G	-	-	-	-	-	-	41	0	0	42	4	9.523809524	0	0	NA	0	0	NA	1.490411309	1	0	0.509588691	2	0	0.490411309	unphased	0.565907068	1.153943756	0.490411309	0.00125	0.99625	0.0025	0	2	6.01E-05	1	1	1	NA	NA	NA	NA
1351289	1206778041	PD9774b	8	9767091	T	G	-	-	-	-	-	-	42	0	0	52	7	13.46153846	0	0	NA	0	0	NA	1.490411309	1	0	0.509588691	2	0	0.490411309	unphased	0.799887875	0.799887875	1	0.0025	0.99625	0.00125	0	2	8.58E-09	1	1	1	NA	NA	NA	NA
1351289	1206778948	PD9774b	8	19339259	T	G	CSGALNACT1	CCDS6010.1	r.?	-	-	intronic	33	0	0	39	10	25.64102564	0	0	NA	0	0	NA	0.841880723	0	0	0.158119277	1	0	0.841880723	unphased	1.357306058	1.357306058	1	0	0.99625	0.00375	0	2	5.44E-15	1	1	1	NA	NA	NA	NA
1351289	1206778949	PD9774b	8	19341526	C	G	CSGALNACT1	CCDS6010.1	r.?	-	-	intronic	38	0	0	63	4	6.349206349	0	0	NA	0	0	NA	0.841880723	0	0	0.158119277	1	0	0.841880723	unphased	0.336094833	0.399219063	0.841880723	0.015	0.985	0	0	2	0.000294233	1	1	1	NA	NA	NA	NA
1351289	1206778982	PD9774b	8	20086515	C	G	-	-	-	-	-	-	48	0	0	41	4	9.756097561	0	0	NA	0	0	NA	0.841880723	0	0	0.158119277	1	0	0.841880723	unphased	0.516438403	0.61343417	0.841880723	0.00375	0.99625	0	0	2	5.46E-05	1	1	1	NA	NA	NA	NA
1351289	1206779010	PD9774b	8	20407135	C	G	-	-	-	-	-	-	27	0	0	35	5	14.28571429	0	0	NA	0	0	NA	0.841880723	0	0	0.158119277	1	0	0.841880723	unphased	0.756213375	0.898242891	0.841880723	0.00125	0.99875	0	0	2	8.95E-07	1	1	1	NA	NA	NA	NA
1351289	1206779437	PD9774b	8	26562935	C	G	-	-	-	-	-	-	32	1	3.125	44	5	11.36363636	0	0	NA	0	0	NA	0.841880723	0	0	0.158119277	1	0	0.841880723	unphased	0.601533367	0.714511391	0.841880723	0.00125	0.99875	0	0	2	2.88E-06	0.14819814	1	1	NA	NA	NA	NA
1351289	1206779592	PD9774b	8	28496103	A	G	-	-	-	-	-	-	42	0	0	38	8	21.05263158	0	0	NA	0	0	NA	0.841880723	0	0	0.158119277	1	0	0.841880723	unphased	1.114419711	1.114419711	1	0	0.9975	0.0025	0	2	1.67E-11	1	1	1	NA	NA	NA	NA
1351289	1206779792	PD9774b	8	30685172	C	G	TEX15	CCDS6080.1	r.?	-	-	downstream	31	0	0	44	6	13.63636364	0	0	NA	0	0	NA	0.841880723	0	0	0.158119277	1	0	0.841880723	unphased	0.72184004	0.857413669	0.841880723	0.00125	0.99625	0.0025	0	2	9.37E-08	1	1	1	NA	NA	NA	NA
1351289	1206779868	PD9774b	8	31631251	C	G	NRG1	CCDS47836.1	r.?	-	-	intronic	42	0	0	40	7	17.5	0	0	NA	0	0	NA	0.841880723	0	0	0.158119277	1	0	0.841880723	unphased	0.926361385	0.926361385	1	0	0.9975	0.0025	0	2	1.26E-09	1	1	1	NA	NA	NA	NA
1351289	1206779921	PD9774b	8	32289822	A	G	NRG1	CCDS47836.1	r.?	-	-	intronic	38	0	0	41	7	17.07317073	0	0	NA	0	0	NA	0.841880723	0	0	0.158119277	1	0	0.841880723	unphased	0.903767205	1.073509797	0.841880723	0	1	0	0	2	1.51E-09	1	1	1	NA	NA	NA	NA
1351289	1206779971	PD9774b	8	33113114	C	G	-	-	-	-	-	-	35	0	0	38	7	18.42105263	0	0	NA	0	0	NA	0.841880723	0	0	0.158119277	1	0	0.841880723	unphased	0.975117247	0.975117247	1	0.00125	0.99875	0	0	2	8.61E-10	1	1	1	NA	NA	NA	NA
1351289	1206779984	PD9774b	8	33236963	C	G	FUT10	CCDS6088.1	r.?	-	-	intronic	25	0	0	46	5	10.86956522	0	0	NA	0	0	NA	0.841880723	0	0	0.158119277	1	0	0.841880723	unphased	0.575379742	0.683445678	0.841880723	0.0025	0.9975	0	0	2	3.61E-06	1	1	1	NA	NA	NA	NA
1351289	1206780097	PD9774b	8	35119711	T	G	UNC5D	CCDS6093.2	r.?	-	-	intronic	43	0	0	51	5	9.803921569	0	0	NA	0	0	NA	0.841880723	0	0	0.158119277	1	0	0.841880723	unphased	0.518969963	0.6164412	0.841880723	0.00375	0.99625	0	0	2	6.06E-06	1	1	1	NA	NA	NA	NA
1351289	1206780098	PD9774b	8	35121232	A	G	UNC5D	CCDS6093.2	r.?	-	-	intronic	51	0	0	61	9	14.75409836	235	0	0	159	29	18.23899371	0.841880723	0	0	0.158119277	1	0	0.841880723	unphased	0.781007256	0.927693478	0.841880723	0	1	0	0	2	2.68E-11	1	5.11E-36	1	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206780122	PD9774b	8	35764705	C	G	-	-	-	-	-	-	25	0	0	37	6	16.21621622	0	0	NA	0	0	NA	0.841880723	0	0	0.158119277	1	0	0.841880723	unphased	0.858404372	1.019627066	0.841880723	0.0025	0.995	0.0025	0	2	3.18E-08	1	1	1	NA	NA	NA	NA
1351289	1206780152	PD9774b	8	36336305	T	G	-	-	-	-	-	-	10	0	0	25	3	12	0	0	NA	0	0	NA	0.841880723	0	0	0.158119277	1	0	0.841880723	unphased	0.635219235	0.754524029	0.841880723	0.00125	0.99875	0	0	2	0.00026475	1	1	1	NA	NA	NA	NA
1351289	1206780363	PD9774b	8	39149464	C	G	-	-	-	-	-	-	35	0	0	52	5	9.615384615	0	0	NA	0	0	NA	0.841880723	0	0	0.158119277	1	0	0.841880723	unphased	0.508989772	0.604586562	0.841880723	0.005	0.995	0	0	2	6.68E-06	1	1	1	NA	NA	NA	NA
1351289	1206780374	PD9774b	8	39330598	T	G	-	-	-	-	-	-	41	0	0	46	8	17.39130435	0	0	NA	0	0	NA	0.841880723	0	0	0.158119277	1	0	0.841880723	unphased	0.920607587	0.920607587	1	0.00125	0.99875	0	0	2	8.61E-11	1	1	1	NA	NA	NA	NA
1351289	1206780581	PD9774b	8	41490546	C	G	-	-	-	-	-	-	32	0	0	33	6	18.18181818	0	0	NA	0	0	NA	0.841880723	0	0	0.158119277	1	0	0.841880723	unphased	0.962453387	0.962453387	1	0	1	0	0	2	1.54E-08	1	1	1	NA	NA	NA	NA
1351289	1206780696	PD9774b	8	42921850	A	G	FNTA	CCDS6140.1	r.?	-	-	intronic	33	0	0	40	5	12.5	0	0	NA	0	0	NA	0.841880723	0	0	0.158119277	1	0	0.841880723	unphased	0.661686703	0.78596253	0.841880723	0.00125	0.99875	0	0	2	1.78E-06	1	1	1	NA	NA	NA	NA
1351289	1206780770	PD9774b	8	43114146	C	G	-	-	-	-	-	-	45	0	0	44	6	13.63636364	0	0	NA	0	0	NA	0.841880723	0	0	0.158119277	1	0	0.841880723	unphased	0.72184004	0.857413669	0.841880723	0.0025	0.9975	0	0	2	9.37E-08	1	1	1	NA	NA	NA	NA
1351289	1206782047	PD9774b	8	54000984	C	G	-	-	-	-	-	-	26	0	0	52	6	11.53846154	0	0	NA	0	0	NA	0.841880723	0	0	0.158119277	1	0	0.841880723	unphased	0.610787726	0.725503874	0.841880723	0.00125	0.99875	0	0	2	2.61E-07	1	1	1	NA	NA	NA	NA
1351289	1206782060	PD9774b	8	54315430	C	G	-	-	-	-	-	-	38	0	0	50	5	10	0	0	NA	0	0	NA	0.841880723	0	0	0.158119277	1	0	0.841880723	unphased	0.529349363	0.628770024	0.841880723	0.00375	0.99625	0	0	2	5.49E-06	1	1	1	NA	NA	NA	NA
1351289	1206782089	PD9774b	8	54573721	A	G	-	-	-	-	-	-	29	0	0	47	11	23.40425532	0	0	NA	0	0	NA	0.841880723	0	0	0.158119277	1	0	0.841880723	unphased	1.238902764	1.238902764	1	0	1	0	0	2	7.21E-16	1	1	1	NA	NA	NA	NA
1351289	1206782412	PD9774b	8	60431354	A	G	-	-	-	-	-	-	38	0	0	49	7	14.28571429	0	0	NA	0	0	NA	0.841880723	0	0	0.158119277	1	0	0.841880723	unphased	0.756213375	0.898242891	0.841880723	0.0025	0.99625	0.00125	0	2	5.58E-09	1	1	1	NA	NA	NA	NA
1351289	1206782432	PD9774b	8	60764635	C	G	-	-	-	-	-	-	34	0	0	57	12	21.05263158	0	0	NA	0	0	NA	0.841880723	0	0	0.158119277	1	0	0.841880723	unphased	1.114419711	1.114419711	1	0	1	0	0	2	1.40E-16	1	1	1	NA	NA	NA	NA
1351289	1206782664	PD9774b	8	64138810	A	G	-	-	-	-	-	-	37	0	0	47	7	14.89361702	0	0	NA	0	0	NA	0.841880723	0	0	0.158119277	1	0	0.841880723	unphased	0.788392668	0.936465993	0.841880723	0.00125	0.9975	0.00125	0	2	4.12E-09	1	1	1	NA	NA	NA	NA
1351289	1206782816	PD9774b	8	67081517	C	G	TRIM55	CCDS6187.1	r.?	-	-	intronic	32	0	0	58	8	13.79310345	0	0	NA	0	0	NA	0.841880723	0	0	0.158119277	1	0	0.841880723	unphased	0.730137052	0.867268999	0.841880723	0.00125	0.99875	0	0	2	5.99E-10	1	1	1	NA	NA	NA	NA
1351289	1206782983	PD9774b	8	69907098	T	G	-	-	-	-	-	-	34	0	0	62	6	9.677419355	0	0	NA	0	0	NA	0.841880723	0	0	0.158119277	1	0	0.841880723	unphased	0.512273577	0.60848712	0.841880723	0.005	0.995	0	0	2	7.56E-07	1	1	1	NA	NA	NA	NA
1351289	1206783238	PD9774b	8	73748324	T	G	KCNB2	CCDS6209.1	r.?	-	-	intronic	29	0	0	41	6	14.63414634	0	0	NA	0	0	NA	0.841880723	0	0	0.158119277	1	0	0.841880723	unphased	0.774657604	0.920151255	0.841880723	0	1	0	0	2	6.05E-08	1	1	1	NA	NA	NA	NA
1351289	1206783477	PD9774b	8	77822747	C	G	-	-	-	-	-	-	40	0	0	39	5	12.82051282	0	0	NA	0	0	NA	0.841880723	0	0	0.158119277	1	0	0.841880723	unphased	0.678653029	0.806115415	0.841880723	0.0025	0.9975	0	0	2	1.56E-06	1	1	1	NA	NA	NA	NA
1351289	1206783571	PD9774b	8	79041683	T	G	-	-	-	-	-	-	39	0	0	44	7	15.90909091	0	0	NA	0	0	NA	0.841880723	0	0	0.158119277	1	0	0.841880723	unphased	0.842146713	1.000315947	0.841880723	0.0025	0.99625	0.00125	0	2	2.55E-09	1	1	1	NA	NA	NA	NA
1351289	1206783726	PD9774b	8	81361640	T	G	-	-	-	-	-	-	31	0	0	41	4	9.756097561	0	0	NA	0	0	NA	1.315636663	1	0	0.684363337	2	0	0.315636663	unphased	0.562658494	0.562658494	1	0.00375	0.99625	0	0	2	5.46E-05	1	1	1	NA	NA	NA	NA
1351289	1206783728	PD9774b	8	81365449	C	G	-	-	-	-	-	-	30	0	0	52	10	19.23076923	0	0	NA	0	0	NA	1.315636663	1	0	0.684363337	2	0	0.315636663	unphased	1.109086455	1.109086455	1	0.0025	0.99625	0.00125	0	2	1.28E-13	1	1	1	NA	NA	NA	NA
1351289	1206783764	PD9774b	8	82211868	C	G	-	-	-	-	-	-	41	0	0	49	10	20.40816327	0	0	NA	0	0	NA	1.315636663	1	0	0.684363337	2	0	0.315636663	unphased	1.176989707	1.176989707	1	0	1	0	0	2	6.72E-14	1	1	1	NA	NA	NA	NA
1351289	1206783898	PD9774b	8	84343889	C	G	-	-	-	-	-	-	33	0	0	52	6	11.53846154	0	0	NA	0	0	NA	1.315636663	1	0	0.684363337	2	0	0.315636663	unphased	0.665451873	0.665451873	1	0.005	0.995	0	0	2	2.61E-07	1	1	1	NA	NA	NA	NA
1351289	1206784007	PD9774b	8	86109146	A	G	E2F5	CCDS47885.1	r.?	-	-	intronic	35	0	0	73	5	6.849315068	0	0	NA	0	0	NA	1.315636663	1	0	0.684363337	2	0	0.315636663	unphased	0.395017094	1.251493062	0.315636663	0.0025	0.995	0.0025	0	2	3.54E-05	1	1	1	NA	NA	NA	NA
1351289	1206784242	PD9774b	8	87500001	A	G	CPNE3	CCDS6243.1	r.?	-	-	intronic	31	0	0	53	9	16.98113208	0	0	NA	0	0	NA	1.315636663	1	0	0.684363337	2	0	0.315636663	unphased	0.979344266	0.979344266	1	0	1	0	0	2	7.10E-12	1	1	1	NA	NA	NA	NA
1351289	1206784286	PD9774b	8	88189766	A	G	-	-	-	-	-	-	41	0	0	58	6	10.34482759	0	0	NA	0	0	NA	3.486636081	3	0	0.513363919	4	0	0.486636081	unphased	0.821198171	0.821198171	1	0	1	0	0	2	5.06E-07	1	1	1	NA	NA	NA	NA
1351289	1206784394	PD9774b	8	89024745	T	G	-	-	-	-	-	-	34	0	0	77	18	23.37662338	0	0	NA	0	0	NA	3.486636081	3	0	0.513363919	4	0	0.486636081	unphased	1.855694568	0.927847284	2	0	1	0	0	2	4.71E-25	1	1	1	NA	NA	NA	NA
1351289	1206784433	PD9774b	8	89353925	C	G	-	-	-	-	-	-	28	0	0	64	28	43.75	0	0	NA	0	0	NA	3.486636081	3	0	0.513363919	4	0	0.486636081	unphased	3.472983931	0.996084435	3.486636081	0	1	0	0	2	3.50E-47	1	1	1	NA	NA	NA	NA
1351289	1206784614	PD9774b	8	91124358	C	G	-	-	-	-	-	-	30	0	0	76	18	23.68421053	0	0	NA	0	0	NA	3.486636081	3	0	0.513363919	4	0	0.486636081	unphased	1.880111601	0.940055801	2	0	1	0	0	2	3.63E-25	1	1	1	NA	NA	NA	NA
1351289	1206784720	PD9774b	8	92085210	T	G	OTUD6B	CCDS6253.2	r.?	-	-	intronic	36	0	0	82	7	8.536585366	0	0	NA	0	0	NA	3.486636081	3	0	0.513363919	4	0	0.486636081	unphased	0.677655401	0.677655401	1	0.0025	0.9975	0	0	2	2.14E-07	1	1	1	NA	NA	NA	NA
1351289	1206784778	PD9774b	8	92496009	A	G	-	-	-	-	-	-	32	0	0	91	10	10.98901099	0	0	NA	0	0	NA	3.486636081	3	0	0.513363919	4	0	0.486636081	unphased	0.872335053	0.872335053	1	0	1	0	0	2	4.34E-11	1	1	1	NA	NA	NA	NA
1351289	1206784864	PD9774b	8	93441071	A	G	-	-	-	-	-	-	16	0	0	46	7	15.2173913	0	0	NA	0	0	NA	3.486636081	3	0	0.513363919	4	0	0.486636081	unphased	1.207994411	1.207994411	1	0	0.9975	0.0025	0	2	3.53E-09	1	1	1	NA	NA	NA	NA
1351289	1206785032	PD9774b	8	95411129	A	G	RAD54B	CCDS6262.1	r.?	-	-	intronic	36	0	0	71	7	9.85915493	0	0	NA	0	0	NA	3.486636081	3	0	0.513363919	4	0	0.486636081	unphased	0.782644266	0.782644266	1	0.00625	0.99375	0	0	2	7.85E-08	1	1	1	NA	NA	NA	NA
1351289	1206785205	PD9774b	8	96302923	C	G	-	-	-	-	-	-	20	0	0	90	12	13.33333333	0	0	NA	0	0	NA	4.520177791	4	0	0.479822209	5	0	0.520177791	unphased	1.196238759	1.196238759	1	0.00125	0.995	0.00375	0	2	4.66E-14	1	1	1	NA	NA	NA	NA
1351289	1206785209	PD9774b	8	96340359	C	G	-	-	-	-	-	-	31	0	0	66	14	21.21212121	0	0	NA	0	0	NA	4.520177791	4	0	0.479822209	5	0	0.520177791	unphased	1.903107117	0.951553558	2	0	0.99875	0.00125	0	2	3.71E-19	1	1	1	NA	NA	NA	NA
1351289	1206785345	PD9774b	8	97449429	C	G	-	-	-	-	-	-	34	0	0	84	12	14.28571429	0	0	NA	0	0	NA	4.520177791	4	0	0.479822209	5	0	0.520177791	unphased	1.281684385	1.281684385	1	0	0.9975	0.0025	0	2	1.98E-14	1	1	1	NA	NA	NA	NA
1351289	1206785556	PD9774b	8	99285994	C	G	NIPAL2	CCDS6278.1	r.?	-	-	intronic	39	0	0	86	8	9.302325581	0	0	NA	0	0	NA	4.520177791	4	0	0.479822209	5	0	0.520177791	unphased	0.834585181	0.834585181	1	0.00125	0.99875	0	0	2	1.47E-08	1	1	1	NA	NA	NA	NA
1351289	1206785557	PD9774b	8	99288175	T	G	NIPAL2	CCDS6278.1	r.?	-	-	intronic	28	0	0	83	7	8.43373494	0	0	NA	0	0	NA	4.520177791	4	0	0.479822209	5	0	0.520177791	unphased	0.756657047	0.756657047	1	0	1	0	0	2	2.33E-07	1	1	1	NA	NA	NA	NA
1351289	1206785678	PD9774b	8	100059843	T	G	VPS13B	CCDS6280.1	r.?	-	-	intronic	32	0	0	95	4	4.210526316	0	0	NA	0	0	NA	4.520177791	4	0	0.479822209	5	0	0.520177791	unphased	0.377759608	0.726212488	0.520177791	0.0025	0.9975	0	0	2	0.001385533	1	1	1	NA	NA	NA	NA
1351289	1206785688	PD9774b	8	100210242	T	G	VPS13B	CCDS6280.1	r.?	-	-	intronic	40	0	0	80	7	8.75	0	0	NA	0	0	NA	4.520177791	4	0	0.479822209	5	0	0.520177791	unphased	0.785031686	0.785031686	1	0	1	0	0	2	1.80E-07	1	1	1	NA	NA	NA	NA
1351289	1206785765	PD9774b	8	101015735	T	G	RGS22	CCDS43758.1	r.?	-	-	intronic	43	0	0	85	34	40	86	0	0	161	43	26.70807453	4.520177791	4	0	0.479822209	5	0	0.520177791	unphased	3.588716278	1.019470178	3.520177791	0	1	0	0	2	2.79E-55	1	1.71E-60	1	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206785875	PD9774b	8	101889124	T	G	-	-	-	-	-	-	36	0	0	70	22	31.42857143	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	2.341935484	1.170967742	2	0	1	0	0	2	1.63E-33	1	1	1	NA	NA	NA	NA
1351289	1206786217	PD9774b	8	105077639	A	G	RIMS2	ENST00000507740	r.?	-	-	intronic	33	0	0	84	8	9.523809524	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	0.709677419	0.709677419	1	0.00375	0.99625	0	0	2	1.21E-08	1	1	1	NA	NA	NA	NA
1351289	1206786257	PD9774b	8	105431557	C	G	DPYS	CCDS6302.1	r.?	-	-	intronic	29	0	0	73	4	5.479452055	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	0.408307556	0.408307556	1	0.01875	0.98125	0	0	2	0.000516741	1	1	1	NA	NA	NA	NA
1351289	1206786380	PD9774b	8	106811845	C	G	ZFPM2	CCDS47908.1	r.?	-	-	intronic	53	0	0	78	5	6.41025641	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	0.477667494	0.477667494	1	0.01375	0.98625	0	0	2	4.87E-05	1	1	1	NA	NA	NA	NA
1351289	1206786480	PD9774b	8	107786907	C	G	ABRA	CCDS6305.1	r.?	-	-	upstream	33	0	0	64	5	7.8125	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	0.582157258	0.582157258	1	0.00625	0.99375	0	0	2	1.86E-05	1	1	1	NA	NA	NA	NA
1351289	1206786527	PD9774b	8	108097205	T	G	-	-	-	-	-	-	34	0	0	76	9	11.84210526	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	0.882427844	0.882427844	1	0	0.99875	0.00125	0	2	2.06E-10	1	1	1	NA	NA	NA	NA
1351289	1206786547	PD9774b	8	108297612	C	G	ANGPT1	CCDS6306.1	r.?	-	-	intronic	41	0	0	64	4	6.25	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	0.465725806	0.465725806	1	0.0075	0.9925	0	0	2	0.000312605	1	1	1	NA	NA	NA	NA
1351289	1206786610	PD9774b	8	108808560	C	G	-	-	-	-	-	-	34	0	0	68	4	5.882352941	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	0.438330171	0.438330171	1	0.01	0.99	0	0	2	0.000394372	1	1	1	NA	NA	NA	NA
1351289	1206786795	PD9774b	8	110819321	C	G	-	-	-	-	-	-	30	0	0	66	10	15.15151515	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	1.129032258	1.129032258	1	0.00125	0.9975	0.00125	0	2	1.60E-12	1	1	1	NA	NA	NA	NA
1351289	1206786796	PD9774b	8	110822348	C	G	-	-	-	-	-	-	31	0	0	74	8	10.81081081	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	0.805579773	0.805579773	1	0.0025	0.9975	0	0	2	4.39E-09	1	1	1	NA	NA	NA	NA
1351289	1206786818	PD9774b	8	111237461	A	G	-	-	-	-	-	-	40	0	0	61	7	11.47540984	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	0.85510312	0.85510312	1	0.00125	0.99875	0	0	2	2.69E-08	1	1	1	NA	NA	NA	NA
1351289	1206786854	PD9774b	8	111825330	A	G	-	-	-	-	-	-	43	0	0	79	5	6.329113924	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	0.47162107	0.47162107	1	0.015	0.985	0	0	2	5.18E-05	1	1	1	NA	NA	NA	NA
1351289	1206786872	PD9774b	8	112049171	A	G	-	-	-	-	-	-	55	0	0	45	7	15.55555556	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	1.159139785	1.159139785	1	0.00125	0.99875	0	0	2	3.00E-09	1	1	1	NA	NA	NA	NA
1351289	1206786885	PD9774b	8	112176713	A	G	-	-	-	-	-	-	28	0	0	47	4	8.510638298	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	0.634179822	0.634179822	1	0.0025	0.9975	0	0	2	9.39E-05	1	1	1	NA	NA	NA	NA
1351289	1206786952	PD9774b	8	113265916	T	G	CSMD3	CCDS6315.1	r.?	-	-	intronic	28	0	0	71	9	12.67605634	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	0.94457065	0.94457065	1	0.005	0.995	0	0	2	1.10E-10	1	1	1	NA	NA	NA	NA
1351289	1206786977	PD9774b	8	113459377	C	G	CSMD3	CCDS6315.1	r.?	-	-	intronic	37	0	0	72	11	15.27777778	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	1.13844086	1.13844086	1	0	1	0	0	2	1.12E-13	1	1	1	NA	NA	NA	NA
1351289	1206786981	PD9774b	8	113484566	A	G	CSMD3	CCDS6315.1	r.?	-	-	intronic	42	0	0	71	8	11.26760563	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	0.839618355	0.839618355	1	0.0025	0.9975	0	0	2	3.14E-09	1	1	1	NA	NA	NA	NA
1351289	1206787004	PD9774b	8	113763439	C	G	CSMD3	CCDS6315.1	r.?	-	-	intronic	32	0	0	70	4	5.714285714	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	0.425806452	0.425806452	1	0.01625	0.98375	0	0	2	0.000440508	1	1	1	NA	NA	NA	NA
1351289	1206787084	PD9774b	8	114421421	C	G	CSMD3	CCDS6315.1	r.?	-	-	intronic	30	0	0	69	5	7.246376812	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	0.53997195	0.53997195	1	0.005	0.995	0	0	2	2.69E-05	1	1	1	NA	NA	NA	NA
1351289	1206787162	PD9774b	8	115026798	T	G	-	-	-	-	-	-	30	0	0	79	13	16.4556962	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	1.226214782	1.226214782	1	0	0.99875	0.00125	0	2	2.37E-16	1	1	1	NA	NA	NA	NA
1351289	1206787213	PD9774b	8	115771255	A	G	-	-	-	-	-	-	28	0	0	81	6	7.407407407	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	0.551971326	0.551971326	1	0.00375	0.99625	0	0	2	3.68E-06	1	1	1	NA	NA	NA	NA
1351289	1206787371	PD9774b	8	117327996	C	G	AF130342.1	ENST00000505156	r.?	-	-	intronic	43	0	0	68	4	5.882352941	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	0.438330171	0.438330171	1	0.01625	0.98375	0	0	2	0.000394372	1	1	1	NA	NA	NA	NA
1351289	1206787381	PD9774b	8	117454255	A	G	-	-	-	-	-	-	20	0	0	61	7	11.47540984	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	0.85510312	0.85510312	1	0	1	0	0	2	2.69E-08	1	1	1	NA	NA	NA	NA
1351289	1206787483	PD9774b	8	118500137	C	G	-	-	-	-	-	-	36	0	0	66	6	9.090909091	2	0	0	0	0	NA	3	3	0	1	NA	NA	NA	unphased	0.677419355	0.677419355	1	0.00125	0.9975	0.00125	0	2	1.10E-06	1	1	1	NA	NA	NA	NA
1351289	1206787486	PD9774b	8	118513820	A	G	-	-	-	-	-	-	35	0	0	60	12	20	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	1.490322581	1.490322581	1	0	0.99125	0.00875	0	2	2.74E-16	1	1	1	NA	NA	NA	NA
1351289	1206787561	PD9774b	8	119323498	C	G	SAMD12	CCDS47913.1	r.?	-	-	intronic	32	0	0	84	6	7.142857143	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	0.532258065	0.532258065	1	0.005	0.995	0	0	2	4.55E-06	1	1	1	NA	NA	NA	NA
1351289	1206787615	PD9774b	8	119991053	A	G	-	-	-	-	-	-	32	0	0	54	6	11.11111111	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	0.827956989	0.827956989	1	0.00125	0.99875	0	0	2	3.29E-07	1	1	1	NA	NA	NA	NA
1351289	1206787624	PD9774b	8	120188892	C	G	-	-	-	-	-	-	41	0	0	58	10	17.24137931	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	1.284760845	1.284760845	1	0.00125	0.99625	0.0025	0	2	4.10E-13	1	1	1	NA	NA	NA	NA
1351289	1206787786	PD9774b	8	121553590	C	G	SNTB1	CCDS6334.1	r.?	-	-	intronic	40	0	0	82	4	4.87804878	0	0	NA	2	0	0	3	3	0	1	NA	NA	NA	unphased	0.363493312	0.363493312	1	0.02875	0.97125	0	0	2	0.000801325	1	1	1	NA	NA	NA	NA
1351289	1206787797	PD9774b	8	121664239	A	G	SNTB1	CCDS6334.1	r.?	-	-	intronic	33	0	0	67	6	8.955223881	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	0.667308618	0.667308618	1	0.00125	0.99875	0	0	2	1.20E-06	1	1	1	NA	NA	NA	NA
1351289	1206787843	PD9774b	8	122402760	C	G	-	-	-	-	-	-	40	0	0	76	8	10.52631579	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	0.784380306	0.784380306	1	0	1	0	0	2	5.44E-09	1	1	1	NA	NA	NA	NA
1351289	1206787863	PD9774b	8	122584216	T	G	-	-	-	-	-	-	48	0	0	72	4	5.555555556	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	0.413978495	0.413978495	1	0.01375	0.98625	0	0	2	0.000490365	1	1	1	NA	NA	NA	NA
1351289	1206787936	PD9774b	8	123434646	T	G	-	-	-	-	-	-	40	0	0	64	9	14.0625	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	1.047883065	1.047883065	1	0	1	0	0	2	4.20E-11	1	1	1	NA	NA	NA	NA
1351289	1206787996	PD9774b	8	123996360	A	G	-	-	-	-	-	-	39	0	0	74	10	13.51351351	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	1.006974717	1.006974717	1	0.00125	0.99875	0	0	2	5.24E-12	1	1	1	NA	NA	NA	NA
1351289	1206787999	PD9774b	8	124051188	C	G	DERL1	CCDS6337.1	r.?	-	-	intronic	27	0	0	68	7	10.29411765	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	0.767077799	0.767077799	1	0.0025	0.9975	0	0	2	5.80E-08	1	1	1	NA	NA	NA	NA
1351289	1206788033	PD9774b	8	124337819	C	G	ATAD2	CCDS6343.1	r.?	-	-	intronic	27	0	0	51	4	7.843137255	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	0.584440228	0.584440228	1	0.00625	0.99375	0	0	2	0.000129466	1	1	1	NA	NA	NA	NA
1351289	1206788064	PD9774b	8	124566764	A	G	-	-	-	-	-	-	27	0	0	68	8	11.76470588	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	0.876660342	0.876660342	1	0	1	0	0	2	2.21E-09	1	1	1	NA	NA	NA	NA
1351289	1206788360	PD9774b	8	127870978	C	G	-	-	-	-	-	-	47	0	0	82	19	23.17073171	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	1.726593234	0.863296617	2	0	1	0	0	2	2.79E-26	1	1	1	NA	NA	NA	NA
1351289	1206788509	PD9774b	8	129523242	C	G	-	-	-	-	-	-	41	0	0	58	7	12.06896552	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	0.899332592	0.899332592	1	0.00125	0.99875	0	0	2	1.88E-08	1	1	1	NA	NA	NA	NA
1351289	1206788575	PD9774b	8	130303464	C	G	-	-	-	-	-	-	38	0	0	58	7	12.06896552	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	0.899332592	0.899332592	1	0.00125	0.99875	0	0	2	1.88E-08	1	1	1	NA	NA	NA	NA
1351289	1206788666	PD9774b	8	131260088	A	G	ASAP1	CCDS6362.1	r.?	-	-	intronic	42	0	0	48	7	14.58333333	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	1.086693548	1.086693548	1	0.00125	0.99625	0.0025	0	2	4.81E-09	1	1	1	NA	NA	NA	NA
1351289	1206788739	PD9774b	8	132037684	A	G	ADCY8	CCDS6363.1	r.?	-	-	intronic	32	0	0	64	9	14.0625	2	0	0	0	0	NA	3	3	0	1	NA	NA	NA	unphased	1.047883065	1.047883065	1	0	0.99875	0.00125	0	2	4.20E-11	1	1	1	NA	NA	NA	NA
1351289	1206788763	PD9774b	8	132347331	C	G	-	-	-	-	-	-	35	0	0	53	10	18.86792453	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	1.405964699	1.405964699	1	0.00125	0.99375	0.005	0	2	1.57E-13	1	1	1	NA	NA	NA	NA
1351289	1206788825	PD9774b	8	132778511	T	G	-	-	-	-	-	-	38	0	0	55	8	14.54545455	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	1.083870968	1.083870968	1	0.00125	0.9975	0.00125	0	2	3.86E-10	1	1	1	NA	NA	NA	NA
1351289	1206788870	PD9774b	8	133273601	T	G	KCNQ3	CCDS34943.1	r.?	-	-	intronic	30	0	0	62	9	14.51612903	0	0	NA	1	0	0	3	3	0	1	NA	NA	NA	unphased	1.081685744	1.081685744	1	0	0.9975	0.0025	0	2	3.12E-11	1	1	1	NA	NA	NA	NA
1351289	1206788912	PD9774b	8	133781032	C	G	-	-	-	-	-	-	34	0	0	72	15	20.83333333	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	1.552419355	0.776209677	2	0	1	0	0	2	2.70E-20	1	1	1	NA	NA	NA	NA
1351289	1206788922	PD9774b	8	133896064	A	G	TG	CCDS34944.1	r.?	-	-	intronic	23	0	0	75	7	9.333333333	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	0.695483871	0.695483871	1	0.0025	0.9975	0	0	2	1.15E-07	1	1	1	NA	NA	NA	NA
1351289	1206788943	PD9774b	8	134142388	A	G	TG	CCDS34944.1	r.?	-	-	intronic	33	0	0	75	5	6.666666667	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	0.496774194	0.496774194	1	0.01125	0.98875	0	0	2	4.03E-05	1	1	1	NA	NA	NA	NA
1351289	1206789051	PD9774b	8	135094726	T	G	-	-	-	-	-	-	22	0	0	73	10	13.69863014	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	1.020768891	1.020768891	1	0.00125	0.99875	0	0	2	4.56E-12	1	1	1	NA	NA	NA	NA
1351289	1206789254	PD9774b	8	137388066	C	G	-	-	-	-	-	-	25	0	0	57	6	10.52631579	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	0.784380306	0.784380306	1	0.00125	0.99875	0	0	2	4.56E-07	1	1	1	NA	NA	NA	NA
1351289	1206789413	PD9774b	8	138446825	C	G	-	-	-	-	-	-	47	0	0	60	4	6.666666667	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	0.496774194	0.496774194	1	0.00625	0.99375	0	0	2	0.000243755	1	1	1	NA	NA	NA	NA
1351289	1206789465	PD9774b	8	138757643	A	G	-	-	-	-	-	-	28	0	0	78	13	16.66666667	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	1.241935484	1.241935484	1	0.00125	0.99625	0.0025	0	2	1.99E-16	1	1	1	NA	NA	NA	NA
1351289	1206789568	PD9774b	8	139363677	A	G	FAM135B	CCDS6375.2	r.?	-	-	intronic	31	0	0	76	7	9.210526316	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	0.686332767	0.686332767	1	0.00625	0.99375	0	0	2	1.26E-07	1	1	1	NA	NA	NA	NA
1351289	1206789653	PD9774b	8	140027194	A	G	-	-	-	-	-	-	44	0	0	74	30	40.54054054	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	3.02092415	1.006974717	3	0	1	0	0	2	3.53E-49	1	1	1	NA	NA	NA	NA
1351289	1206789772	PD9774b	8	141140334	A	G	TRAPPC9	CCDS34946.1	r.?	-	-	intronic	32	0	0	57	8	14.03508772	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	1.045840407	1.045840407	1	0.00375	0.995	0.00125	0	2	5.19E-10	1	1	1	NA	NA	NA	NA
1351289	1206789983	PD9774b	8	142610939	C	G	-	-	-	-	-	-	26	0	0	68	7	10.29411765	0	0	NA	0	0	NA	4	4	0	1	NA	NA	NA	unphased	0.870018975	0.870018975	1	0	1	0	0	2	5.80E-08	1	1	1	NA	NA	NA	NA
1351289	1206790034	PD9774b	8	143020609	C	G	-	-	-	-	-	-	29	0	0	53	5	9.433962264	125	1	0.8	20	0	0	4	4	0	1	NA	NA	NA	unphased	0.797321972	0.797321972	1	0.0025	0.9975	0	0	2	7.34E-06	1	1	0.465577058	NA	NA	NA	NA
1351289	1206790071	PD9774b	8	143183232	C	G	-	-	-	-	-	-	39	0	0	69	6	8.695652174	0	0	NA	0	0	NA	4	4	0	1	NA	NA	NA	unphased	0.734922861	0.734922861	1	0.0025	0.9975	0	0	2	1.43E-06	1	1	1	NA	NA	NA	NA
1351289	1206790114	PD9774b	8	143313298	C	G	TSNARE1	CCDS6384.1	r.?	-	-	intronic	35	0	0	75	16	21.33333333	0	0	NA	0	0	NA	4	4	0	1	NA	NA	NA	unphased	1.803010753	0.901505376	2	0.0025	0.9975	0	0	2	9.88E-22	1	1	1	NA	NA	NA	NA
1351289	1206790179	PD9774b	8	143791907	C	G	ENSG00000232495	ENST00000426305	r.?	-	-	intronic	19	0	0	83	7	8.43373494	0	0	NA	0	0	NA	4	4	0	1	NA	NA	NA	unphased	0.71278663	0.71278663	1	0	1	0	0	2	2.33E-07	1	1	1	NA	NA	NA	NA
1351289	1206790583	PD9774b	8	146147378	A	G	-	-	-	-	-	-	27	0	0	58	10	17.24137931	0	0	NA	0	0	NA	4	4	0	1	NA	NA	NA	unphased	1.457174638	1.457174638	1	0	0.995	0.005	0	2	4.10E-13	1	1	1	NA	NA	NA	NA
1351289	1206790808	PD9774b	9	1476450	T	G	-	-	-	-	-	-	34	0	0	56	5	8.928571429	0	0	NA	0	0	NA	1.641928061	1	0	0.358071939	2	0	0.641928061	unphased	0.544066158	0.847550045	0.641928061	0	1	0	0	2	9.65E-06	1	1	1	NA	NA	NA	NA
1351289	1206790940	PD9774b	9	3288358	A	G	RFX3	CCDS6449.1	r.?	-	-	intronic	38	0	0	61	26	42.62295082	0	0	NA	0	0	NA	1.641928061	1	0	0.358071939	2	0	0.641928061	unphased	2.597246969	1.581827505	1.641928061	0	0.8825	0.1175	0	2	1.53E-43	1	1	1	NA	NA	NA	NA
1351289	1206791083	PD9774b	9	4904149	C	G	-	-	-	-	-	-	39	0	0	73	21	28.76712329	0	0	NA	0	0	NA	1.641928061	1	0	0.358071939	2	0	0.641928061	unphased	1.752936442	1.067608553	1.641928061	0	1	0	0	2	4.03E-31	1	1	1	NA	NA	NA	NA
1351289	1206791313	PD9774b	9	7705742	C	G	-	-	-	-	-	-	44	0	0	71	18	25.35211268	0	0	NA	0	0	NA	4	2	2	1	NA	NA	NA	unphased	2.142662426	1.071331213	2	0	0.99875	0.00125	0	2	9.22E-26	1	1	1	NA	NA	NA	NA
1351289	1206791335	PD9774b	9	8083951	C	G	-	-	-	-	-	-	33	0	0	62	5	8.064516129	0	0	NA	0	0	NA	4	2	2	1	NA	NA	NA	unphased	0.681581686	0.681581686	1	0.0025	0.9975	0	0	2	1.60E-05	1	1	1	NA	NA	NA	NA
1351289	1206791515	PD9774b	9	9799289	A	G	PTPRD	CCDS43786.1	r.?	-	-	intronic	34	0	0	82	5	6.097560976	0	0	NA	0	0	NA	4	2	2	1	NA	NA	NA	unphased	0.51534225	0.51534225	1	0.0075	0.9925	0	0	2	6.19E-05	1	1	1	NA	NA	NA	NA
1351289	1206791528	PD9774b	9	10024561	A	G	PTPRD	CCDS43786.1	r.?	-	-	intronic	33	0	0	45	10	22.22222222	0	0	NA	2	0	0	4	2	2	1	NA	NA	NA	unphased	1.878136201	0.9390681	2	0.00125	0.99875	0	0	2	2.66E-14	1	1	1	NA	NA	NA	NA
1351289	1206791549	PD9774b	9	10120459	C	G	PTPRD	CCDS43786.1	r.?	-	-	intronic	43	0	0	72	4	5.555555556	0	0	NA	0	0	NA	4	2	2	1	NA	NA	NA	unphased	0.46953405	0.46953405	1	0.00125	0.99875	0	0	2	0.000490365	1	1	1	NA	NA	NA	NA
1351289	1206791635	PD9774b	9	10834618	C	G	-	-	-	-	-	-	25	0	0	48	8	16.66666667	0	0	NA	0	0	NA	4	2	2	1	NA	NA	NA	unphased	1.408602151	1.408602151	1	0	0.99375	0.00625	0	2	1.23E-10	1	1	1	NA	NA	NA	NA
1351289	1206791639	PD9774b	9	10849027	A	G	-	-	-	-	-	-	32	0	0	70	6	8.571428571	0	0	NA	0	0	NA	4	2	2	1	NA	NA	NA	unphased	0.724423963	0.724423963	1	0.0075	0.9925	0	0	2	1.56E-06	1	1	1	NA	NA	NA	NA
1351289	1206791671	PD9774b	9	11145093	T	G	-	-	-	-	-	-	30	0	0	77	18	23.37662338	0	0	NA	0	0	NA	4	2	2	1	NA	NA	NA	unphased	1.975701718	0.987850859	2	0	1	0	0	2	4.71E-25	1	1	1	NA	NA	NA	NA
1351289	1206791781	PD9774b	9	12039794	C	G	-	-	-	-	-	-	38	0	0	74	7	9.459459459	0	0	NA	2	0	0	4	2	2	1	NA	NA	NA	unphased	0.799476896	0.799476896	1	0	1	0	0	2	1.05E-07	1	1	1	NA	NA	NA	NA
1351289	1206791797	PD9774b	9	12138695	C	G	-	-	-	-	-	-	42	0	0	62	17	27.41935484	0	0	NA	0	0	NA	4	2	2	1	NA	NA	NA	unphased	2.317377732	1.158688866	2	0	1	0	0	2	4.56E-25	1	1	1	NA	NA	NA	NA
1351289	1206791979	PD9774b	9	13820697	C	G	-	-	-	-	-	-	30	0	0	87	6	6.896551724	0	0	NA	0	0	NA	4	2	2	1	NA	NA	NA	unphased	0.582869855	0.582869855	1	0.0075	0.9925	0	0	2	5.58E-06	1	1	1	NA	NA	NA	NA
1351289	1206792062	PD9774b	9	14500154	A	G	-	-	-	-	-	-	23	0	0	77	6	7.792207792	0	0	NA	0	0	NA	4	2	2	1	NA	NA	NA	unphased	0.658567239	0.658567239	1	0.00625	0.99375	0	0	2	2.73E-06	1	1	1	NA	NA	NA	NA
1351289	1206792137	PD9774b	9	15070181	A	G	-	-	-	-	-	-	37	0	0	74	22	29.72972973	0	0	NA	0	0	NA	4	2	2	1	NA	NA	NA	unphased	2.512641674	1.256320837	2	0	0.99875	0.00125	0	2	6.78E-33	1	1	1	NA	NA	NA	NA
1351289	1206792240	PD9774b	9	15869090	C	G	C9orf93	CCDS6481.1	r.?	-	-	intronic	29	0	0	75	4	5.333333333	0	0	NA	0	0	NA	4	2	2	1	NA	NA	NA	unphased	0.450752688	0.450752688	1	0.0125	0.98625	0.00125	0	2	0.000572493	1	1	1	NA	NA	NA	NA
1351289	1206792271	PD9774b	9	16234059	T	G	C9orf92	ENST00000380685	r.?	-	-	intronic	23	0	0	55	11	20	0	0	NA	0	0	NA	2.748462482	1	1	0.251537518	2	1	0.748462482	unphased	1.440015077	1.440015077	1	0	0.99625	0.00375	0	2	4.77E-15	1	1	1	NA	NA	NA	NA
1351289	1206792434	PD9774b	9	17724470	C	G	SH3GL2	CCDS6483.1	r.?	-	-	intronic	47	0	0	63	16	25.3968254	0	0	NA	0	0	NA	2.748462482	1	1	0.251537518	2	1	0.748462482	unphased	1.828590574	1.045827745	1.748462482	0	1	0	0	2	4.48E-23	1	1	1	NA	NA	NA	NA
1351289	1206792463	PD9774b	9	18103820	C	G	-	-	-	-	-	-	41	0	0	59	22	37.28813559	0	0	NA	0	0	NA	2.748462482	1	1	0.251537518	2	1	0.748462482	unphased	2.684773872	1.535505566	1.748462482	0	0.9575	0.0425	0	2	1.79E-35	1	1	1	NA	NA	NA	NA
1351289	1206792475	PD9774b	9	18353548	C	G	-	-	-	-	-	-	42	0	0	67	5	7.462686567	0	0	NA	0	0	NA	2.748462482	1	1	0.251537518	2	1	0.748462482	unphased	0.537319059	0.717897118	0.748462482	0.00125	0.99875	0	0	2	2.33E-05	1	1	1	NA	NA	NA	NA
1351289	1206792491	PD9774b	9	18614612	C	G	ADAMTSL1	CCDS47954.1	r.?	-	-	intronic	47	0	0	60	4	6.666666667	0	0	NA	0	0	NA	2.748462482	1	1	0.251537518	2	1	0.748462482	unphased	0.480005026	0.641321425	0.748462482	0.00375	0.99625	0	0	2	0.000243755	1	1	1	NA	NA	NA	NA
1351289	1206792854	PD9774b	9	22230132	C	G	-	-	-	-	-	-	42	0	0	58	5	8.620689655	0	0	NA	0	0	NA	2.748462482	1	1	0.251537518	2	1	0.748462482	unphased	0.620696154	0.829294947	0.748462482	0.00375	0.995	0.00125	0	2	1.15E-05	1	1	1	NA	NA	NA	NA
1351289	1206793155	PD9774b	9	26404964	A	G	-	-	-	-	-	-	38	0	0	51	8	15.68627451	0	0	NA	0	0	NA	2.748462482	1	1	0.251537518	2	1	0.748462482	unphased	1.12942359	1.12942359	1	0.0025	0.9975	0	0	2	2.05E-10	1	1	1	NA	NA	NA	NA
1351289	1206793160	PD9774b	9	26469245	T	G	-	-	-	-	-	-	23	0	0	60	12	20	0	0	NA	0	0	NA	2.748462482	1	1	0.251537518	2	1	0.748462482	unphased	1.440015077	1.440015077	1	0	0.99375	0.00625	0	2	2.74E-16	1	1	1	NA	NA	NA	NA
1351289	1206793271	PD9774b	9	27544480	C	G	C9orf72	CCDS6522.1	r.?	-	-	downstream	32	0	0	63	18	28.57142857	0	0	NA	0	0	NA	2.748462482	1	1	0.251537518	2	1	0.748462482	unphased	2.057164396	1.176556213	1.748462482	0	0.9975	0.0025	0	2	7.98E-27	1	1	1	NA	NA	NA	NA
1351289	1206793324	PD9774b	9	28099086	A	G	LINGO2	CCDS6524.1	r.?	-	-	intronic	37	0	0	63	8	12.6984127	0	0	NA	0	0	NA	2.748462482	1	1	0.251537518	2	1	0.748462482	unphased	0.914295287	0.914295287	1	0	1	0	0	2	1.18E-09	1	1	1	NA	NA	NA	NA
1351289	1206793340	PD9774b	9	28291053	C	G	LINGO2	CCDS6524.1	r.?	-	-	intronic	32	0	0	55	12	21.81818182	0	0	NA	0	0	NA	2.748462482	1	1	0.251537518	2	1	0.748462482	unphased	1.570925539	1.570925539	1	0	0.98875	0.01125	0	2	8.78E-17	1	1	1	NA	NA	NA	NA
1351289	1206793342	PD9774b	9	28338851	C	G	LINGO2	CCDS6524.1	r.?	-	-	intronic	33	0	0	56	7	12.5	0	0	NA	0	0	NA	2.748462482	1	1	0.251537518	2	1	0.748462482	unphased	0.900009423	0.900009423	1	0.0025	0.9975	0	0	2	1.46E-08	1	1	1	NA	NA	NA	NA
1351289	1206793356	PD9774b	9	28510168	A	G	LINGO2	CCDS6524.1	r.?	-	-	intronic	41	0	0	64	15	23.4375	0	0	NA	0	0	NA	2.748462482	1	1	0.251537518	2	1	0.748462482	unphased	1.687517668	0.965143768	1.748462482	0	0.99875	0.00125	0	2	3.87E-21	1	1	1	NA	NA	NA	NA
1351289	1206793409	PD9774b	9	28965014	A	G	-	-	-	-	-	-	39	0	0	65	5	7.692307692	0	0	NA	0	0	NA	2.748462482	1	1	0.251537518	2	1	0.748462482	unphased	0.553851953	0.73998626	0.748462482	0.00625	0.99375	0	0	2	2.01E-05	1	1	1	NA	NA	NA	NA
1351289	1206793411	PD9774b	9	28982126	C	G	-	-	-	-	-	-	46	0	0	53	4	7.547169811	0	0	NA	0	0	NA	2.748462482	1	1	0.251537518	2	1	0.748462482	unphased	0.543401916	0.726024255	0.748462482	0	0.99875	0.00125	0	2	0.000150502	1	1	1	NA	NA	NA	NA
1351289	1206793558	PD9774b	9	30412689	T	G	-	-	-	-	-	-	39	0	0	51	10	19.60784314	0	0	NA	0	0	NA	2.748462482	1	1	0.251537518	2	1	0.748462482	unphased	1.411779487	1.411779487	1	0	0.995	0.005	0	2	1.04E-13	1	1	1	NA	NA	NA	NA
1351289	1206793601	PD9774b	9	30807204	A	G	-	-	-	-	-	-	38	0	0	81	17	20.98765432	0	0	NA	0	0	NA	2.748462482	1	1	0.251537518	2	1	0.748462482	unphased	1.511126933	0.864260428	1.748462482	0	1	0	0	2	7.24E-23	1	1	1	NA	NA	NA	NA
1351289	1206793650	PD9774b	9	31543194	A	G	-	-	-	-	-	-	39	0	0	87	5	5.747126437	0	0	NA	0	0	NA	2.748462482	1	1	0.251537518	2	1	0.748462482	unphased	0.413797436	0.552863298	0.748462482	0.00625	0.99375	0	0	2	8.21E-05	1	1	1	NA	NA	NA	NA
1351289	1206793725	PD9774b	9	32420771	T	G	ACO1	CCDS6525.1	r.?	-	-	intronic	29	0	0	58	10	17.24137931	0	0	NA	0	0	NA	2.748462482	1	1	0.251537518	2	1	0.748462482	unphased	1.241392308	1.241392308	1	0	1	0	0	2	4.10E-13	1	1	1	NA	NA	NA	NA
1351289	1206794328	PD9774b	9	36871367	C	G	PAX5	CCDS6607.1	r.?	-	-	intronic	23	0	0	50	4	8	0	0	NA	0	0	NA	2.748462482	1	1	0.251537518	2	1	0.748462482	unphased	0.576006031	0.76958571	0.748462482	0.00375	0.995	0.00125	0	2	0.000119787	1	1	1	NA	NA	NA	NA
1351289	1206794344	PD9774b	9	37037417	A	G	PAX5	CCDS6607.1	r.?	-	-	upstream	33	0	0	60	6	10	0	0	NA	0	0	NA	2.748462482	1	1	0.251537518	2	1	0.748462482	unphased	0.720007539	0.961982138	0.748462482	0.00125	0.99875	0	0	2	6.21E-07	1	1	1	NA	NA	NA	NA
1351289	1206795439	PD9774b	9	66264066	T	G	-	-	-	-	-	-	8	0	0	19	3	15.78947368	0	0	NA	0	0	NA	2.748462482	1	1	0.251537518	2	1	0.748462482	unphased	1.136854008	1.136854008	1	0.00375	0.99625	0	0	2	0.000114071	1	1	1	NA	NA	NA	NA
1351289	1206802083	PD9774b	9	69084371	C	G	-	-	-	-	-	-	51	0	0	98	5	5.102040816	0	0	NA	0	0	NA	2.748462482	1	1	0.251537518	2	1	0.748462482	unphased	0.367350785	0.490807213	0.748462482	0.00375	0.99625	0	0	2	0.000144245	1	1	1	NA	NA	NA	NA
1351289	1206803148	PD9774b	9	70693791	C	G	-	-	-	-	-	-	26	0	0	36	4	11.11111111	0	0	NA	0	0	NA	2.748462482	1	1	0.251537518	2	1	0.748462482	unphased	0.800008376	1.068869042	0.748462482	0.00125	0.9975	0.00125	0	2	3.24E-05	1	1	1	NA	NA	NA	NA
1351289	1206803454	PD9774b	9	73253113	C	G	TRPM3	CCDS43835.1	r.?	-	-	intronic	41	0	0	60	12	20	0	0	NA	0	0	NA	0.778367287	0	0	0.221632713	1	0	0.778367287	unphased	1.045996038	1.045996038	1	0	1	0	0	2	2.74E-16	1	1	1	NA	NA	NA	NA
1351289	1206803639	PD9774b	9	75121117	T	G	-	-	-	-	-	-	40	0	0	37	4	10.81081081	0	0	NA	0	0	NA	0.778367287	0	0	0.221632713	1	0	0.778367287	unphased	0.565403264	0.726396489	0.778367287	0.00375	0.995	0.00125	0	2	3.62E-05	1	1	1	NA	NA	NA	NA
1351289	1206803716	PD9774b	9	76062982	A	G	-	-	-	-	-	-	29	0	0	40	10	25	0	0	NA	0	0	NA	0.778367287	0	0	0.221632713	1	0	0.778367287	unphased	1.307495047	1.307495047	1	0	0.99625	0.00375	0	2	7.22E-15	1	1	1	NA	NA	NA	NA
1351289	1206803720	PD9774b	9	76146886	A	G	-	-	-	-	-	-	43	0	0	40	8	20	0	0	NA	0	0	NA	0.778367287	0	0	0.221632713	1	0	0.778367287	unphased	1.045996038	1.045996038	1	0	0.99875	0.00125	0	2	2.61E-11	1	1	1	NA	NA	NA	NA
1351289	1206803965	PD9774b	9	79337962	C	G	PRUNE2	CCDS47982.1	r.?	-	-	intronic	25	0	0	66	12	18.18181818	0	0	NA	0	0	NA	0.778367287	0	0	0.221632713	1	0	0.778367287	unphased	0.950905489	0.950905489	1	0	1	0	0	2	9.36E-16	1	1	1	NA	NA	NA	NA
1351289	1206804084	PD9774b	9	80983940	C	G	-	-	-	-	-	-	21	0	0	37	5	13.51351351	0	0	NA	0	0	NA	0.778367287	0	0	0.221632713	1	0	0.778367287	unphased	0.70675408	0.907995611	0.778367287	0.00375	0.99625	0	0	2	1.19E-06	1	1	1	NA	NA	NA	NA
1351289	1206804151	PD9774b	9	81947305	C	G	-	-	-	-	-	-	42	0	0	49	6	12.24489796	0	0	NA	0	0	NA	0.778367287	0	0	0.221632713	1	0	0.778367287	unphased	0.640405738	0.822755206	0.778367287	0.0025	0.99625	0.00125	0	2	1.82E-07	1	1	1	NA	NA	NA	NA
1351289	1206804171	PD9774b	9	82350168	A	G	-	-	-	-	-	-	36	0	0	41	7	17.07317073	0	0	NA	0	0	NA	0.778367287	0	0	0.221632713	1	0	0.778367287	unphased	0.892923447	0.892923447	1	0	1	0	0	2	1.51E-09	1	1	1	NA	NA	NA	NA
1351289	1206804306	PD9774b	9	83835718	C	G	-	-	-	-	-	-	33	0	0	47	5	10.63829787	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.686341798	0.686341798	1	0.00125	0.99875	0	0	2	4.02E-06	1	1	1	NA	NA	NA	NA
1351289	1206804472	PD9774b	9	86421043	A	G	GKAP1	CCDS35049.1	r.?	-	-	intronic	31	0	0	55	12	21.81818182	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.407624633	1.407624633	1	0	0.99625	0.00375	0	2	8.78E-17	1	1	1	NA	NA	NA	NA
1351289	1206804751	PD9774b	9	90007634	T	G	-	-	-	-	-	-	43	0	0	60	12	20	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.290322581	1.290322581	1	0.0025	0.995	0.0025	0	2	2.74E-16	1	1	1	NA	NA	NA	NA
1351289	1206804868	PD9774b	9	91101811	A	G	-	-	-	-	-	-	39	0	0	67	5	7.462686567	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.481463649	0.481463649	1	0.01125	0.98875	0	0	2	2.33E-05	1	1	1	NA	NA	NA	NA
1351289	1206804957	PD9774b	9	92831023	T	G	-	-	-	-	-	-	37	0	0	58	5	8.620689655	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.556173526	0.556173526	1	0.00375	0.99625	0	0	2	1.15E-05	1	1	1	NA	NA	NA	NA
1351289	1206804972	PD9774b	9	93029413	C	G	-	-	-	-	-	-	36	0	0	56	6	10.71428571	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.69124424	0.69124424	1	0.0025	0.9975	0	0	2	4.09E-07	1	1	1	NA	NA	NA	NA
1351289	1206805302	PD9774b	9	96175019	C	G	-	-	-	-	-	-	34	0	0	69	7	10.14492754	0	0	NA	0	0	NA	2.412438486	1	1	0.587561514	2	1	0.412438486	unphased	0.69635304	0.69635304	1	0.00125	0.99875	0	0	2	6.43E-08	1	1	1	NA	NA	NA	NA
1351289	1206805349	PD9774b	9	96570206	T	G	-	-	-	-	-	-	25	0	0	43	5	11.62790698	1	0	0	0	0	NA	2.412438486	1	1	0.587561514	2	1	0.412438486	unphased	0.79814551	0.79814551	1	0.00375	0.99625	0	0	2	2.57E-06	1	1	1	NA	NA	NA	NA
1351289	1206805466	PD9774b	9	97582245	T	G	MIR24-1	CCDS6713.1	r.?	-	-	intronic	21	0	0	46	8	17.39130435	0	0	NA	0	0	NA	2.412438486	1	1	0.587561514	2	1	0.412438486	unphased	1.193748068	1.193748068	1	0	0.99875	0.00125	0	2	8.61E-11	1	1	1	NA	NA	NA	NA
1351289	1206805550	PD9774b	9	98727014	C	G	C9orf102	CCDS35072.1	r.?	-	-	intronic	33	0	0	56	4	7.142857143	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.460829493	0.460829493	1	0.015	0.985	0	0	2	0.000186538	1	1	1	NA	NA	NA	NA
1351289	1206805634	PD9774b	9	99725842	A	G	HIATL2	ENST00000375223	r.?	-	-	intronic	32	0	0	59	6	10.16949153	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.656096227	0.656096227	1	0.00375	0.99625	0	0	2	5.61E-07	1	1	1	NA	NA	NA	NA
1351289	1206805848	PD9774b	9	102501490	C	G	-	-	-	-	-	-	36	0	0	57	11	19.29824561	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.245048104	1.245048104	1	0	1	0	0	2	7.29E-15	1	1	1	NA	NA	NA	NA
1351289	1206805944	PD9774b	9	103738390	T	G	-	-	-	-	-	-	31	0	0	55	4	7.272727273	0	0	NA	2	0	0	2	1	1	1	NA	NA	NA	unphased	0.469208211	0.469208211	1	0.01125	0.98875	0	0	2	0.000173903	1	1	1	NA	NA	NA	NA
1351289	1206806106	PD9774b	9	105798195	C	G	-	-	-	-	-	-	22	0	0	55	10	18.18181818	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.173020528	1.173020528	1	0	1	0	0	2	2.33E-13	1	1	1	NA	NA	NA	NA
1351289	1206806335	PD9774b	9	108426674	A	G	TAL2	CCDS6767.1	r.?	-	-	downstream	25	0	0	61	15	24.59016393	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.586462189	1.586462189	1	0	0.98	0.02	0	2	1.73E-21	1	1	1	NA	NA	NA	NA
1351289	1206806537	PD9774b	9	111297469	C	G	-	-	-	-	-	-	37	0	0	44	13	29.54545455	0	0	NA	0	0	NA	1.288878388	1	0	0.711121612	2	0	0.288878388	unphased	1.696054245	1.315914876	1.288878388	0	0.99875	0.00125	0	2	5.49E-20	1	1	1	NA	NA	NA	NA
1351289	1206806780	PD9774b	9	114238818	C	G	KIAA0368	CCDS48006.1	r.?	-	-	intronic	46	0	0	40	10	25	0	0	NA	0	0	NA	1.288878388	1	0	0.711121612	2	0	0.288878388	unphased	1.435122823	1.435122823	1	0	0.995	0.005	0	2	7.22E-15	1	1	1	NA	NA	NA	NA
1351289	1206806876	PD9774b	9	115073479	T	G	ROD1	CCDS6784.1	r.?	-	-	intronic	36	0	0	40	3	7.5	0	0	NA	0	0	NA	1.288878388	1	0	0.711121612	2	0	0.288878388	unphased	0.430536847	1.490374026	0.288878388	0	0.9975	0.0025	0	2	0.001075403	1	1	1	NA	NA	NA	NA
1351289	1206807101	PD9774b	9	117600875	C	G	-	-	-	-	-	-	36	0	0	41	9	21.95121951	0	0	NA	0	0	NA	1.288878388	1	0	0.711121612	2	0	0.288878388	unphased	1.260107845	1.260107845	1	0	0.995	0.005	0	2	5.92E-13	1	1	1	NA	NA	NA	NA
1351289	1206807324	PD9774b	9	120427925	C	G	-	-	-	-	-	-	36	0	0	44	4	9.090909091	0	0	NA	0	0	NA	1.288878388	1	0	0.711121612	2	0	0.288878388	unphased	0.521862845	0.521862845	1	0.005	0.99375	0.00125	0	2	7.23E-05	1	1	1	NA	NA	NA	NA
1351289	1206807419	PD9774b	9	121642305	C	G	-	-	-	-	-	-	20	0	0	46	8	17.39130435	0	0	NA	0	0	NA	1.288878388	1	0	0.711121612	2	0	0.288878388	unphased	0.998346312	0.998346312	1	0	1	0	0	2	8.61E-11	1	1	1	NA	NA	NA	NA
1351289	1206807656	PD9774b	9	124702993	C	G	TTLL11	CCDS48012.1	r.?	-	-	intronic	24	0	0	57	15	26.31578947	0	0	NA	0	0	NA	1.288878388	1	0	0.711121612	2	0	0.288878388	unphased	1.510655603	1.510655603	1	0	0.98125	0.01875	0	2	5.53E-22	1	1	1	NA	NA	NA	NA
1351289	1206808001	PD9774b	9	128589985	T	G	PBX3	CCDS6865.1	r.?	-	-	intronic	41	0	0	71	4	5.633802817	0	0	NA	0	0	NA	1.288878388	1	0	0.711121612	2	0	0.288878388	unphased	0.32340796	1.119529785	0.288878388	0	0.99875	0.00125	0	2	0.000464961	1	1	1	NA	NA	NA	NA
1351289	1206808034	PD9774b	9	129061805	C	G	-	-	-	-	-	-	26	0	0	48	5	10.41666667	0	0	NA	0	0	NA	1.288878388	1	0	0.711121612	2	0	0.288878388	unphased	0.597967843	0.597967843	1	0.0075	0.9925	0	0	2	4.47E-06	1	1	1	NA	NA	NA	NA
1351289	1206808107	PD9774b	9	130018417	A	G	GARNL3	ENST00000373399	r.?	-	-	intronic	34	0	0	44	7	15.90909091	0	0	NA	0	0	NA	1.288878388	1	0	0.711121612	2	0	0.288878388	unphased	0.913259978	0.913259978	1	0	1	0	0	2	2.55E-09	1	1	1	NA	NA	NA	NA
1351289	1206808172	PD9774b	9	130809817	C	G	-	-	-	-	-	-	32	0	0	47	7	14.89361702	0	0	NA	0	0	NA	1.288878388	1	0	0.711121612	2	0	0.288878388	unphased	0.854966788	0.854966788	1	0.00125	0.99875	0	0	2	4.12E-09	1	1	1	NA	NA	NA	NA
1351289	1206808235	PD9774b	9	131405091	A	G	WDR34	CCDS6906.2	r.?	-	-	intronic	34	0	0	61	5	8.196721311	0	0	NA	0	0	NA	1.288878388	1	0	0.711121612	2	0	0.288878388	unphased	0.470532073	0.470532073	1	0.01	0.99	0	0	2	1.47E-05	1	1	1	NA	NA	NA	NA
1351289	1206808487	PD9774b	9	133489230	T	G	FUBP3	CCDS43893.1	r.?	-	-	intronic	30	0	0	60	22	36.66666667	0	0	NA	1	0	0	1.288878388	1	0	0.711121612	2	0	0.288878388	unphased	2.104846807	1.633084103	1.288878388	0	0.92125	0.07875	0	2	2.81E-35	1	1	1	NA	NA	NA	NA
1351289	1206808703	PD9774b	9	135846349	C	G	GFI1B	CCDS6957.1	r.?	-	-	intronic	32	0	0	51	6	11.76470588	0	0	NA	0	0	NA	1.288878388	1	0	0.711121612	2	0	0.288878388	unphased	0.675351917	0.675351917	1	0.00625	0.99375	0	0	2	2.32E-07	1	1	1	NA	NA	NA	NA
1351289	1206809494	PD9774b	X	3319754	A	G	-	-	-	-	-	-	30	0	0	34	7	20.58823529	0	0	NA	0	0	NA	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	3.73E-10	1	1	1	NA	NA	NA	NA
1351289	1206809691	PD9774b	X	5573429	A	G	-	-	-	-	-	-	32	0	0	58	11	18.96551724	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.033926585	1.033926585	1	0	1	0	0	2	8.96E-15	1	1	1	NA	NA	NA	NA
1351289	1206810163	PD9774b	X	11377116	C	G	ARHGAP6	CCDS14140.1	r.?	-	-	intronic	36	0	0	65	9	13.84615385	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.75483871	0.75483871	1	0.00375	0.99625	0	0	2	4.85E-11	1	1	1	NA	NA	NA	NA
1351289	1206810229	PD9774b	X	12581117	T	G	FRMPD4	CCDS35201.1	r.?	-	-	intronic	27	0	0	39	7	17.94871795	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.978494624	0.978494624	1	0.00125	0.99875	0	0	2	1.04E-09	1	1	1	NA	NA	NA	NA
1351289	1206810267	PD9774b	X	13133426	A	G	-	-	-	-	-	-	24	0	0	52	10	19.23076923	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.048387097	1.048387097	1	0	1	0	0	2	1.28E-13	1	1	1	NA	NA	NA	NA
1351289	1206810345	PD9774b	X	14574428	T	G	GLRA2	CCDS48085.1	r.?	-	-	intronic	38	0	0	53	9	16.98113208	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.925745587	0.925745587	1	0	1	0	0	2	7.10E-12	1	1	1	NA	NA	NA	NA
1351289	1206810366	PD9774b	X	14910637	C	G	MOSPD2	CCDS14162.1	r.?	-	-	intronic	41	0	0	44	9	20.45454545	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.115102639	1.115102639	1	0	1	0	0	2	1.18E-12	1	1	1	NA	NA	NA	NA
1351289	1206810381	PD9774b	X	15175748	A	G	-	-	-	-	-	-	33	0	0	45	11	24.44444444	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.332616487	1.332616487	1	0.00125	0.995	0.00375	0	2	4.24E-16	1	1	1	NA	NA	NA	NA
1351289	1206810473	PD9774b	X	16420379	A	G	-	-	-	-	-	-	39	0	0	52	7	13.46153846	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.733870968	0.733870968	1	0.0025	0.9975	0	0	2	8.58E-09	1	1	1	NA	NA	NA	NA
1351289	1206810569	PD9774b	X	17709492	T	G	NHS	CCDS14181.1	r.?	-	-	intronic	29	0	0	43	6	13.95348837	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.760690173	0.760690173	1	0.0025	0.9975	0	0	2	8.13E-08	1	1	1	NA	NA	NA	NA
1351289	1206810850	PD9774b	X	22179672	C	G	PHEX	CCDS14204.1	r.?	-	-	intronic	43	0	0	65	8	12.30769231	0	0	NA	0	0	NA	1.637835256	1	0	0.362164744	1	1	0.637835256	unphased	0.749470543	1.175022132	0.637835256	0	0.99875	0.00125	0	2	1.53E-09	1	1	1	NA	NA	NA	NA
1351289	1206811012	PD9774b	X	24407234	C	G	-	-	-	-	-	-	29	0	0	47	8	17.0212766	0	0	NA	0	0	NA	1.637835256	1	0	0.362164744	1	1	0.637835256	unphased	1.036501814	1.036501814	1	0	1	0	0	2	1.03E-10	1	1	1	NA	NA	NA	NA
1351289	1206811018	PD9774b	X	24510117	C	G	PDK3	CCDS48088.1	r.?	-	-	intronic	31	0	0	45	7	15.55555556	0	0	NA	0	0	NA	1.637835256	1	0	0.362164744	1	1	0.637835256	unphased	0.947247491	0.947247491	1	0	1	0	0	2	3.00E-09	1	1	1	NA	NA	NA	NA
1351289	1206811023	PD9774b	X	24584612	A	G	PCYT1B	CCDS14213.1	r.?	-	-	intronic	38	0	0	45	7	15.55555556	0	0	NA	0	0	NA	1.637835256	1	0	0.362164744	1	1	0.637835256	unphased	0.947247491	0.947247491	1	0	1	0	0	2	3.00E-09	1	1	1	NA	NA	NA	NA
1351289	1206811135	PD9774b	X	26297947	A	G	-	-	-	-	-	-	46	0	0	51	7	13.7254902	0	0	NA	0	0	NA	1.637835256	1	0	0.362164744	1	1	0.637835256	unphased	0.83580661	0.83580661	1	0.0025	0.9975	0	0	2	7.46E-09	1	1	1	NA	NA	NA	NA
1351289	1206811269	PD9774b	X	28701028	T	G	IL1RAPL1	CCDS14218.1	r.?	-	-	intronic	42	0	0	57	6	10.52631579	0	0	NA	0	0	NA	1.637835256	1	0	0.362164744	1	1	0.637835256	unphased	0.640994543	1.004953139	0.637835256	0	1	0	0	2	4.56E-07	1	1	1	NA	NA	NA	NA
1351289	1206811270	PD9774b	X	28701096	A	G	IL1RAPL1	CCDS14218.1	r.?	-	-	intronic	49	0	0	46	4	8.695652174	0	0	NA	0	0	NA	1.637835256	1	0	0.362164744	1	1	0.637835256	unphased	0.529517231	0.83017868	0.637835256	0	1	0	0	2	8.62E-05	1	1	1	NA	NA	NA	NA
1351289	1206811282	PD9774b	X	28831814	C	G	IL1RAPL1	CCDS14218.1	r.?	-	-	intronic	37	0	0	46	4	8.695652174	0	0	NA	0	0	NA	1.637835256	1	0	0.362164744	1	1	0.637835256	unphased	0.529517231	0.83017868	0.637835256	0.00375	0.995	0.00125	0	2	8.62E-05	1	1	1	NA	NA	NA	NA
1351289	1206811401	PD9774b	X	30493594	T	G	-	-	-	-	-	-	40	0	0	45	8	17.77777778	0	0	NA	0	0	NA	1.637835256	1	0	0.362164744	1	1	0.637835256	unphased	1.082568562	1.082568562	1	0	1	0	0	2	7.14E-11	1	1	1	NA	NA	NA	NA
1351289	1206811503	PD9774b	X	31613809	T	G	DMD	CCDS14233.1	r.?	-	-	intronic	35	0	0	43	3	6.976744186	0	0	NA	0	0	NA	1.415960809	1	0	0.584039191	1	1	0.415960809	unphased	0.409365608	0.984144658	0.415960809	0.0025	0.99625	0.00125	0	2	0.001328364	1	1	1	NA	NA	NA	NA
1351289	1206811580	PD9774b	X	32940878	T	G	DMD	CCDS14233.1	r.?	-	-	intronic	23	0	0	35	4	11.42857143	0	0	NA	0	0	NA	1.415960809	1	0	0.584039191	1	1	0.415960809	unphased	0.670579853	0.670579853	1	0.005	0.99375	0.00125	0	2	2.89E-05	1	1	1	NA	NA	NA	NA
1351289	1206811581	PD9774b	X	32940880	C	G	DMD	CCDS14233.1	r.?	-	-	intronic	22	0	0	35	4	11.42857143	0	0	NA	0	0	NA	1.415960809	1	0	0.584039191	1	1	0.415960809	unphased	0.670579853	0.670579853	1	0.00375	0.99625	0	0	2	2.89E-05	1	1	1	NA	NA	NA	NA
1351289	1206811610	PD9774b	X	33517699	A	G	-	-	-	-	-	-	31	0	0	46	5	10.86956522	0	0	NA	0	0	NA	1.415960809	1	0	0.584039191	1	1	0.415960809	unphased	0.637779751	0.637779751	1	0.00125	0.99875	0	0	2	3.61E-06	1	1	1	NA	NA	NA	NA
1351289	1206811631	PD9774b	X	33785317	C	G	-	-	-	-	-	-	33	0	0	51	4	7.843137255	0	0	NA	0	0	NA	1.415960809	1	0	0.584039191	1	1	0.415960809	unphased	0.46020186	1.1063587	0.415960809	0	1	0	0	2	0.000129466	1	1	1	NA	NA	NA	NA
1351289	1206811706	PD9774b	X	35440882	C	G	-	-	-	-	-	-	26	0	0	25	3	12	0	0	NA	0	0	NA	1.415960809	1	0	0.584039191	1	1	0.415960809	unphased	0.704108845	0.704108845	1	0.00375	0.99625	0	0	2	0.00026475	1	1	1	NA	NA	NA	NA
1351289	1206811772	PD9774b	X	36762935	A	G	-	-	-	-	-	-	34	0	0	58	9	15.51724138	0	0	NA	0	0	NA	1.415960809	1	0	0.584039191	1	1	0.415960809	unphased	0.910485576	0.910485576	1	0	0.9975	0.0025	0	2	1.67E-11	1	1	1	NA	NA	NA	NA
1351289	1206811802	PD9774b	X	37687171	A	G	ENSG00000250349	ENST00000465127	r.?	-	-	intronic	34	0	0	56	5	8.928571429	0	0	NA	0	0	NA	1.415960809	1	0	0.584039191	1	1	0.415960809	unphased	0.52389051	1.259470842	0.415960809	0	1	0	0	2	9.65E-06	1	1	1	NA	NA	NA	NA
1351289	1206812028	PD9774b	X	41319124	T	G	NYX	CCDS14256.1	r.?	-	-	intronic	36	0	0	57	15	26.31578947	0	0	NA	0	0	NA	1.415960809	1	0	0.584039191	1	1	0.415960809	unphased	1.544098345	1.544098345	1	0	0.98375	0.01625	0	2	5.53E-22	1	1	1	NA	NA	NA	NA
1351289	1206812236	PD9774b	X	44783944	T	G	KDM6A	CCDS14265.1	r.?	-	-	intronic	19	0	0	22	3	13.63636364	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.879765396	0.879765396	1	0.0025	0.9975	0	0	2	0.000179267	1	1	1	NA	NA	NA	NA
1351289	1206812277	PD9774b	X	45585838	C	G	-	-	-	-	-	-	41	0	0	56	4	7.142857143	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.460829493	0.460829493	1	0.01125	0.98875	0	0	2	0.000186538	1	1	1	NA	NA	NA	NA
1351289	1206812345	PD9774b	X	46440900	A	G	CHST7	CCDS14268.1	r.?	-	-	intronic	34	1	2.941176471	38	4	10.52631579	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.679117148	0.679117148	1	0.0025	0.9975	0	0	2	4.03E-05	0.156694864	1	1	NA	NA	NA	NA
1351289	1206812418	PD9774b	X	47297595	C	G	-	-	-	-	-	-	21	0	0	44	6	13.63636364	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.879765396	0.879765396	1	0.00375	0.995	0.00125	0	2	9.37E-08	1	1	1	NA	NA	NA	NA
1351289	1206812427	PD9774b	X	47399295	T	G	-	-	-	-	-	-	38	0	0	50	10	20	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.290322581	1.290322581	1	0	0.99625	0.00375	0	2	8.36E-14	1	1	1	NA	NA	NA	NA
1351289	1206812513	PD9774b	X	48331265	A	G	SLC38A5	CCDS14293.1	r.?	-	-	upstream	35	0	0	53	6	11.32075472	255	0	0	148	20	13.51351351	2	1	1	1	NA	NA	NA	unphased	0.730371272	0.730371272	1	0.005	0.995	0	0	2	2.93E-07	1	1.41E-22	1	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206812531	PD9774b	X	48437886	A	G	RBM3	CCDS14301.1	r.?	-	-	downstream	39	0	0	45	8	17.77777778	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.146953405	1.146953405	1	0	0.99875	0.00125	0	2	7.14E-11	1	1	1	NA	NA	NA	NA
1351289	1206812646	PD9774b	X	49897847	A	G	-	-	-	-	-	-	38	0	0	56	5	8.928571429	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.576036866	0.576036866	1	0.0075	0.9925	0	0	2	9.65E-06	1	1	1	NA	NA	NA	NA
1351289	1206812889	PD9774b	X	53520726	C	G	-	-	-	-	-	-	20	0	0	32	5	15.625	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.008064516	1.008064516	1	0.00125	0.99875	0	0	2	5.62E-07	1	1	1	NA	NA	NA	NA
1351289	1206813012	PD9774b	X	55035753	C	G	ALAS2	CCDS14366.1	r.1762g>c	c.1624G>C	p.A542P	missense	33	0	0	62	5	8.064516129	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.520291363	0.520291363	1	0.005	0.99375	0.00125	0	2	1.60E-05	1	1	1	NA	NA	NA	NA
1351289	1206813026	PD9774b	X	55267882	C	G	-	-	-	-	-	-	29	0	0	59	5	8.474576271	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.546746856	0.546746856	1	0.0075	0.99125	0.00125	0	2	1.25E-05	1	1	1	NA	NA	NA	NA
1351289	1206814688	PD9774b	X	62536278	A	G	-	-	-	-	-	-	42	0	0	43	6	13.95348837	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.900225056	0.900225056	1	0	0.9975	0.0025	0	2	8.13E-08	1	1	1	NA	NA	NA	NA
1351289	1206814753	PD9774b	X	63915078	C	G	-	-	-	-	-	-	38	0	0	42	9	21.42857143	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.382488479	1.382488479	1	0.00125	0.99375	0.005	0	2	7.51E-13	1	1	1	NA	NA	NA	NA
1351289	1206814801	PD9774b	X	64961722	A	G	MSN	CCDS14382.1	r.3873a>g	c.?	p.?	3'UTR variant	33	0	0	53	8	15.09433962	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.973828363	0.973828363	1	0	0.99875	0.00125	0	2	2.83E-10	1	1	1	NA	NA	NA	NA
1351289	1206814874	PD9774b	X	66526040	A	G	-	-	-	-	-	-	32	0	0	62	8	12.90322581	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.832466181	0.832466181	1	0	1	0	0	2	1.04E-09	1	1	1	NA	NA	NA	NA
1351289	1206814897	PD9774b	X	66974908	A	G	-	-	-	-	-	-	35	0	0	48	7	14.58333333	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.940860215	0.940860215	1	0	1	0	0	2	4.81E-09	1	1	1	NA	NA	NA	NA
1351289	1206814918	PD9774b	X	67077174	C	G	-	-	-	-	-	-	39	0	0	57	6	10.52631579	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.679117148	0.679117148	1	0.0025	0.9975	0	0	2	4.56E-07	1	1	1	NA	NA	NA	NA
1351289	1206814951	PD9774b	X	67372791	A	G	OPHN1	CCDS14388.1	r.?	-	-	intronic	28	0	0	48	10	20.83333333	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.344086022	1.344086022	1	0	0.99875	0.00125	0	2	5.37E-14	1	1	1	NA	NA	NA	NA
1351289	1206815004	PD9774b	X	68028485	T	G	-	-	-	-	-	-	38	0	0	36	4	11.11111111	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.716845878	0.716845878	1	0.00125	0.99875	0	0	2	3.24E-05	1	1	1	NA	NA	NA	NA
1351289	1206815126	PD9774b	X	69382680	C	G	IGBP1	CCDS14396.1	r.?	-	-	intronic	24	0	0	53	6	11.32075472	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.730371272	0.730371272	1	0	1	0	0	2	2.93E-07	1	1	1	NA	NA	NA	NA
1351289	1206815413	PD9774b	X	73158311	C	G	-	-	-	-	-	-	34	0	0	40	6	15	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.967741935	0.967741935	1	0	1	0	0	2	5.18E-08	1	1	1	NA	NA	NA	NA
1351289	1206815464	PD9774b	X	74068290	A	G	KIAA2022	CCDS35337.1	r.?	-	-	intronic	27	0	0	52	5	9.615384615	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.620347395	0.620347395	1	0.00125	0.99875	0	0	2	6.68E-06	1	1	1	NA	NA	NA	NA
1351289	1206815541	PD9774b	X	75901459	A	G	-	-	-	-	-	-	41	0	0	64	5	7.8125	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.504032258	0.504032258	1	0.00375	0.99625	0	0	2	1.86E-05	1	1	1	NA	NA	NA	NA
1351289	1206815588	PD9774b	X	76545921	C	G	-	-	-	-	-	-	39	0	0	61	7	11.47540984	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.740349022	0.740349022	1	0.0025	0.9975	0	0	2	2.69E-08	1	1	1	NA	NA	NA	NA
1351289	1206815616	PD9774b	X	77076486	T	G	-	-	-	-	-	-	19	0	0	17	4	23.52941176	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.518026565	1.518026565	1	0	0.995	0.005	0	2	1.41E-06	1	1	1	NA	NA	NA	NA
1351289	1206815756	PD9774b	X	79794779	A	G	-	-	-	-	-	-	29	0	0	51	7	13.7254902	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.885515497	0.885515497	1	0	1	0	0	2	7.46E-09	1	1	1	NA	NA	NA	NA
1351289	1206815807	PD9774b	X	80491363	C	G	SH3BGRL	CCDS14449.1	r.?	-	-	intronic	36	0	0	58	4	6.896551724	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	0.513904338	0.513904338	1	0.0025	0.9975	0	0	2	0.000213772	1	1	1	NA	NA	NA	NA
1351289	1206815836	PD9774b	X	80828096	C	G	-	-	-	-	-	-	25	0	0	61	11	18.03278689	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	1.343733474	1.343733474	1	0	0.9925	0.0075	0	2	1.62E-14	1	1	1	NA	NA	NA	NA
1351289	1206815853	PD9774b	X	81179241	A	G	-	-	-	-	-	-	45	0	0	58	7	12.06896552	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	0.899332592	0.899332592	1	0.00125	0.99875	0	0	2	1.88E-08	1	1	1	NA	NA	NA	NA
1351289	1206816282	PD9774b	X	86887727	A	G	KLHL4	CCDS14457.1	r.?	-	-	intronic	35	0	0	48	4	8.333333333	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.537634409	0.537634409	1	0.005	0.995	0	0	2	0.000102016	1	1	1	NA	NA	NA	NA
1351289	1206816318	PD9774b	X	87623648	C	G	-	-	-	-	-	-	34	0	0	54	6	11.11111111	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.716845878	0.716845878	1	0.005	0.995	0	0	2	3.29E-07	1	1	1	NA	NA	NA	NA
1351289	1206816343	PD9774b	X	87969194	C	G	-	-	-	-	-	-	37	0	0	49	6	12.24489796	187	1	0.534759358	337	40	11.8694362	2	1	1	1	NA	NA	NA	unphased	0.789993417	0.789993417	1	0.00125	0.99875	0	0	2	1.82E-07	1	2.99E-41	0.608333795	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206816496	PD9774b	X	88593142	T	G	-	-	-	-	-	-	26	0	0	42	6	14.28571429	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.921658986	0.921658986	1	0.00375	0.995	0.00125	0	2	7.02E-08	1	1	1	NA	NA	NA	NA
1351289	1206816564	PD9774b	X	89663453	C	G	-	-	-	-	-	-	35	0	0	32	6	18.75	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.209677419	1.209677419	1	0.00125	0.9975	0.00125	0	2	1.27E-08	1	1	1	NA	NA	NA	NA
1351289	1206816572	PD9774b	X	90072310	A	G	-	-	-	-	-	-	30	0	0	33	5	15.15151515	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.977517107	0.977517107	1	0.00125	0.99875	0	0	2	6.60E-07	1	1	1	NA	NA	NA	NA
1351289	1206816604	PD9774b	X	90668479	A	G	-	-	-	-	-	-	30	0	0	51	5	9.803921569	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.632511069	0.632511069	1	0.0025	0.9975	0	0	2	6.06E-06	1	1	1	NA	NA	NA	NA
1351289	1206816636	PD9774b	X	91221537	C	G	PCDH11X	CCDS14461.1	r.?	-	-	intronic	21	0	0	29	4	13.79310345	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.889877642	0.889877642	1	0.0025	0.9975	0	0	2	1.34E-05	1	1	1	NA	NA	NA	NA
1351289	1206816674	PD9774b	X	91621350	A	G	PCDH11X	CCDS14461.1	r.?	-	-	intronic	13	0	0	32	5	15.625	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.008064516	1.008064516	1	0	1	0	0	2	5.62E-07	1	1	1	NA	NA	NA	NA
1351289	1206816944	PD9774b	X	95700871	C	G	-	-	-	-	-	-	29	0	0	54	5	9.259259259	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.597371565	0.597371565	1	0.00375	0.99625	0	0	2	8.06E-06	1	1	1	NA	NA	NA	NA
1351289	1206817052	PD9774b	X	96980164	C	G	-	-	-	-	-	-	36	0	0	49	8	16.32653061	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.053324556	1.053324556	1	0	0.9975	0.0025	0	2	1.47E-10	1	1	1	NA	NA	NA	NA
1351289	1206817124	PD9774b	X	97878109	T	G	-	-	-	-	-	-	41	0	0	60	12	20	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.290322581	1.290322581	1	0	0.99625	0.00375	0	2	2.74E-16	1	1	1	NA	NA	NA	NA
1351289	1206817139	PD9774b	X	98255169	C	G	-	-	-	-	-	-	32	0	0	60	8	13.33333333	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.860215054	0.860215054	1	0	1	0	0	2	7.93E-10	1	1	1	NA	NA	NA	NA
1351289	1206817145	PD9774b	X	98375658	A	G	-	-	-	-	-	-	32	0	0	65	9	13.84615385	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.893300248	0.893300248	1	0.00125	0.99875	0	0	2	4.85E-11	1	1	1	NA	NA	NA	NA
1351289	1206817162	PD9774b	X	98706052	T	G	-	-	-	-	-	-	32	0	0	51	7	13.7254902	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.885515497	0.885515497	1	0	1	0	0	2	7.46E-09	1	1	1	NA	NA	NA	NA
1351289	1206817252	PD9774b	X	99959281	C	G	SYTL4	CCDS14472.1	r.?	-	-	intronic	32	0	0	52	8	15.38461538	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.992555831	0.992555831	1	0	1	0	0	2	2.42E-10	1	1	1	NA	NA	NA	NA
1351289	1206817314	PD9774b	X	100507358	C	G	DRP2	CCDS14480.2	r.?	-	-	intronic	27	0	0	49	7	14.28571429	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.921658986	0.921658986	1	0.00125	0.99875	0	0	2	5.58E-09	1	1	1	NA	NA	NA	NA
1351289	1206817422	PD9774b	X	102308444	A	G	ENSG00000226623	ENST00000416953	r.?	-	-	intronic	29	0	0	49	4	8.163265306	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.526662278	0.526662278	1	0.00625	0.99375	0	0	2	0.000110643	1	1	1	NA	NA	NA	NA
1351289	1206817679	PD9774b	X	106630677	T	G	-	-	-	-	-	-	44	0	0	56	4	7.142857143	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.460829493	0.460829493	1	0.0075	0.9925	0	0	2	0.000186538	1	1	1	NA	NA	NA	NA
1351289	1206817690	PD9774b	X	106686620	C	G	-	-	-	-	-	-	33	0	0	53	6	11.32075472	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.730371272	0.730371272	1	0.0025	0.99625	0.00125	0	2	2.93E-07	1	1	1	NA	NA	NA	NA
1351289	1206817730	PD9774b	X	107429735	T	G	COL4A6	CCDS14542.1	r.?	-	-	intronic	34	0	0	59	9	15.25423729	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.984144341	0.984144341	1	0.00125	0.99875	0	0	2	1.96E-11	1	1	1	NA	NA	NA	NA
1351289	1206817780	PD9774b	X	108268847	C	G	-	-	-	-	-	-	39	0	0	60	11	18.33333333	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.182795699	1.182795699	1	0.00125	0.99625	0.0025	0	2	1.34E-14	1	1	1	NA	NA	NA	NA
1351289	1206817909	PD9774b	X	110603712	A	G	DCX	CCDS14556.1	r.?	-	-	intronic	29	0	0	47	4	8.510638298	0	0	NA	0	0	NA	0.837155243	0	0	0.162844757	1	0	0.837155243	unphased	0.450107927	0.53766363	0.837155243	0.00875	0.99125	0	0	2	9.39E-05	1	1	1	NA	NA	NA	NA
1351289	1206817931	PD9774b	X	111012695	A	G	TRPC5	CCDS14561.1	r.?	-	-	downstream	39	0	0	50	4	8	0	0	NA	0	0	NA	0.837155243	0	0	0.162844757	1	0	0.837155243	unphased	0.423101452	0.505403813	0.837155243	0.00875	0.99125	0	0	2	0.000119787	1	1	1	NA	NA	NA	NA
1351289	1206818226	PD9774b	X	115593193	A	G	SLC6A14	CCDS14570.1	r.?	-	-	downstream	34	0	0	51	4	7.843137255	0	0	NA	0	0	NA	0.837155243	0	0	0.162844757	1	0	0.837155243	unphased	0.414805345	0.495493934	0.837155243	0.00625	0.99375	0	0	2	0.000129466	1	1	1	NA	NA	NA	NA
1351289	1206818227	PD9774b	X	115616562	A	G	-	-	-	-	-	-	44	0	0	43	4	9.302325581	0	0	NA	0	0	NA	0.837155243	0	0	0.162844757	1	0	0.837155243	unphased	0.491978432	0.587678852	0.837155243	0.00375	0.99625	0	0	2	6.60E-05	1	1	1	NA	NA	NA	NA
1351289	1206818444	PD9774b	X	118686389	C	G	CXorf56	CCDS14579.1	r.?	-	-	intronic	38	0	0	52	12	23.07692308	0	0	NA	0	0	NA	0.837155243	0	0	0.162844757	1	0	0.837155243	unphased	1.220484957	1.220484957	1	0.00125	0.9975	0.00125	0	2	4.19E-17	1	1	1	NA	NA	NA	NA
1351289	1206818603	PD9774b	X	121191668	A	G	-	-	-	-	-	-	42	0	0	47	5	10.63829787	0	0	NA	0	0	NA	0.396306917	0	0	0.603693083	1	0	0.396306917	unphased	0.515736151	1.301355412	0.396306917	0.00125	0.99625	0.0025	0	2	4.02E-06	1	1	1	NA	NA	NA	NA
1351289	1206818881	PD9774b	X	126134365	C	G	-	-	-	-	-	-	32	0	0	43	6	13.95348837	0	0	NA	0	0	NA	0.396306917	0	0	0.603693083	1	0	0.396306917	unphased	0.676453928	0.676453928	1	0.00375	0.99625	0	0	2	8.13E-08	1	1	1	NA	NA	NA	NA
1351289	1206819749	PD9774b	X	143125173	C	G	-	-	-	-	-	-	41	0	0	38	4	10.52631579	0	0	NA	0	0	NA	0.396306917	0	0	0.603693083	1	0	0.396306917	unphased	0.510307349	1.287656934	0.396306917	0.00125	0.99875	0	0	2	4.03E-05	1	1	1	NA	NA	NA	NA
1351289	1206819772	PD9774b	X	143893542	T	G	-	-	-	-	-	-	40	0	0	37	6	16.21621622	0	0	NA	0	0	NA	0.396306917	0	0	0.603693083	1	0	0.396306917	unphased	0.78614916	0.78614916	1	0.005	0.995	0	0	2	3.18E-08	1	1	1	NA	NA	NA	NA
1351289	1206819874	PD9774b	X	145613434	T	G	-	-	-	-	-	-	36	0	0	51	4	7.843137255	0	0	NA	0	0	NA	0.396306917	0	0	0.603693083	1	0	0.396306917	unphased	0.380229005	0.959430657	0.396306917	0.00125	0.99625	0.0025	0	2	0.000129466	1	1	1	NA	NA	NA	NA
1351289	1206479356	PD9774b	1	1930745	C	T	KIAA1751	ENST00000270720	r.?	-	-	intronic	29	0	0	45	14	31.11111111	0	0	NA	0	0	NA	1.28043747	1	0	0.71956253	1	1	0.28043747	unphased	1.783304561	1.783304561	1	0	0.95375	0.04625	0	2	8.81E-22	1	1	1	NA	NA	NA	NA
1351289	1206480273	PD9774b	1	4684285	A	T	-	-	-	-	-	-	19	0	0	58	9	15.51724138	0	0	NA	0	0	NA	1.28043747	1	0	0.71956253	1	1	0.28043747	unphased	0.889456092	0.889456092	1	0.00375	0.99625	0	0	2	1.67E-11	1	1	1	NA	NA	NA	NA
1351289	1206481215	PD9774b	1	14336805	G	T	C1orf196	ENST00000412667	r.?	-	-	intronic	26	0	0	36	4	11.11111111	0	0	NA	0	0	NA	0.401924708	0	0	0.598075292	1	0	0.401924708	unphased	0.539281957	1.341748705	0.401924708	0.00125	0.9975	0.00125	0	2	3.24E-05	1	1	1	NA	NA	NA	NA
1351289	1206481354	PD9774b	1	16073877	G	T	TMEM82	CCDS30608.1	r.?	-	-	intronic	25	0	0	35	4	11.42857143	0	0	NA	0	0	NA	0.401924708	0	0	0.598075292	1	0	0.401924708	unphased	0.554690013	1.380084383	0.401924708	0.0025	0.995	0.0025	0	2	2.89E-05	1	1	1	NA	NA	NA	NA
1351289	1206482766	PD9774b	1	24904491	C	T	C1orf130	CCDS30632.1	r.?	-	-	intronic	37	0	0	62	10	16.12903226	0	0	NA	0	0	NA	1.828511191	1	0	0.171488809	1	1	0.828511191	unphased	1.012923241	1.012923241	1	0.00125	0.99875	0	0	2	8.29E-13	1	1	1	NA	NA	NA	NA
1351289	1206482861	PD9774b	1	26133000	G	T	SEPN1	CCDS41282.1	r.?	-	-	intronic	34	0	0	42	5	11.9047619	78	0	0	9	0	0	1.828511191	1	0	0.171488809	1	1	0.828511191	unphased	0.747633821	0.902382284	0.828511191	0	0.99875	0.00125	0	2	2.28E-06	1	1	1	NA	NA	NA	NA
1351289	1206482951	PD9774b	1	27103216	C	T	ARID1A	CCDS285.1	r.?	-	-	intronic	30	0	0	60	9	15	0	0	NA	0	0	NA	1.828511191	1	0	0.171488809	1	1	0.828511191	unphased	0.942018614	0.942018614	1	0.0025	0.99625	0.00125	0	2	2.29E-11	1	1	1	NA	NA	NA	NA
1351289	1206483063	PD9774b	1	28561417	C	T	DNAJC8	CCDS41292.1	r.?	-	-	upstream	39	0	0	56	5	8.928571429	0	0	NA	0	0	NA	1.828511191	1	0	0.171488809	1	1	0.828511191	unphased	0.560725366	0.676786713	0.828511191	0.00375	0.99625	0	0	2	9.65E-06	1	1	1	NA	NA	NA	NA
1351289	1206483208	PD9774b	1	29697322	C	T	ENSG00000231360	ENST00000455342	r.?	-	-	intronic	29	0	0	57	6	10.52631579	0	0	NA	0	0	NA	1.828511191	1	0	0.171488809	1	1	0.828511191	unphased	0.661065694	0.797895914	0.828511191	0	1	0	0	2	4.56E-07	1	1	1	NA	NA	NA	NA
1351289	1206483224	PD9774b	1	30077786	G	T	-	-	-	-	-	-	25	0	0	51	5	9.803921569	0	0	NA	0	0	NA	1.828511191	1	0	0.171488809	1	1	0.828511191	unphased	0.615698441	0.743138351	0.828511191	0.0075	0.9925	0	0	2	6.06E-06	1	1	1	NA	NA	NA	NA
1351289	1206483253	PD9774b	1	30454004	C	T	-	-	-	-	-	-	24	0	0	46	5	10.86956522	0	0	NA	0	0	NA	1.828511191	1	0	0.171488809	1	1	0.828511191	unphased	0.682622184	0.823914259	0.828511191	0.0075	0.99125	0.00125	0	2	3.61E-06	1	1	1	NA	NA	NA	NA
1351289	1206483272	PD9774b	1	30753376	G	T	-	-	-	-	-	-	36	0	0	40	6	15	0	0	NA	0	0	NA	1.828511191	1	0	0.171488809	1	1	0.828511191	unphased	0.942018614	0.942018614	1	0.00125	0.99875	0	0	2	5.18E-08	1	1	1	NA	NA	NA	NA
1351289	1206483306	PD9774b	1	31243677	A	T	-	-	-	-	-	-	29	0	0	52	5	9.615384615	0	0	NA	0	0	NA	1.828511191	1	0	0.171488809	1	1	0.828511191	unphased	0.603858086	0.728847229	0.828511191	0.00125	0.99875	0	0	2	6.68E-06	1	1	1	NA	NA	NA	NA
1351289	1206483453	PD9774b	1	32589131	C	T	KPNA6	CCDS352.1	r.?	-	-	intronic	40	0	0	46	5	10.86956522	0	0	NA	0	0	NA	1.828511191	1	0	0.171488809	1	1	0.828511191	unphased	0.682622184	0.823914259	0.828511191	0.0025	0.9975	0	0	2	3.61E-06	1	1	1	NA	NA	NA	NA
1351289	1206483541	PD9774b	1	33559756	G	T	ADC	CCDS375.1	r.?	-	-	intronic	34	0	0	51	5	9.803921569	0	0	NA	0	0	NA	1.828511191	1	0	0.171488809	1	1	0.828511191	unphased	0.615698441	0.743138351	0.828511191	0	0.99875	0.00125	0	2	6.06E-06	1	1	1	NA	NA	NA	NA
1351289	1206483625	PD9774b	1	34919774	G	T	-	-	-	-	-	-	40	0	0	50	5	10	0	0	NA	0	0	NA	1.828511191	1	0	0.171488809	1	1	0.828511191	unphased	0.628012409	0.758001118	0.828511191	0	0.99875	0.00125	0	2	5.49E-06	1	1	1	NA	NA	NA	NA
1351289	1206483745	PD9774b	1	36419022	C	T	EIF2C3	CCDS399.1	r.?	-	-	intronic	39	0	0	53	7	13.20754717	0	0	NA	0	0	NA	1.828511191	1	0	0.171488809	1	1	0.828511191	unphased	0.829450352	1.001133552	0.828511191	0	1	0	0	2	9.85E-09	1	1	1	NA	NA	NA	NA
1351289	1206484044	PD9774b	1	39769386	A	T	MACF1	CCDS435.1	r.?	-	-	intronic	27	0	0	39	4	10.25641026	0	0	NA	0	0	NA	1.828511191	1	0	0.171488809	1	1	0.828511191	unphased	0.644115292	0.777437044	0.828511191	0	1	0	0	2	4.47E-05	1	1	1	NA	NA	NA	NA
1351289	1206484139	PD9774b	1	40810278	G	T	SMAP2	ENST00000435168	r.?	-	-	upstream	30	0	0	53	12	22.64150943	0	0	NA	0	0	NA	1.828511191	1	0	0.171488809	1	1	0.828511191	unphased	1.421914889	1.421914889	1	0	0.9925	0.0075	0	2	5.39E-17	1	1	1	NA	NA	NA	NA
1351289	1206484426	PD9774b	1	44798388	A	T	ERI3	CCDS30696.1	r.?	-	-	intronic	26	0	0	47	4	8.510638298	0	0	NA	0	0	NA	1.828511191	1	0	0.171488809	1	1	0.828511191	unphased	0.534478646	0.645107335	0.828511191	0.00375	0.99625	0	0	2	9.39E-05	1	1	1	NA	NA	NA	NA
1351289	1206484789	PD9774b	1	50464140	C	T	AGBL4	CCDS44137.1	r.?	-	-	intronic	42	0	0	54	5	9.259259259	0	0	NA	0	0	NA	1.828511191	1	0	0.171488809	1	1	0.828511191	unphased	0.581492972	0.701852887	0.828511191	0.00125	0.99875	0	0	2	8.06E-06	1	1	1	NA	NA	NA	NA
1351289	1206484898	PD9774b	1	52044304	A	T	OSBPL9	ENST00000371714	r.?	-	-	intronic	33	0	0	50	5	10	0	0	NA	0	0	NA	1.828511191	1	0	0.171488809	1	1	0.828511191	unphased	0.628012409	0.758001118	0.828511191	0.0025	0.9975	0	0	2	5.49E-06	1	1	1	NA	NA	NA	NA
1351289	1206484914	PD9774b	1	52191200	C	T	OSBPL9	CCDS44145.1	r.?	-	-	intronic	34	0	0	55	5	9.090909091	0	0	NA	0	0	NA	1.828511191	1	0	0.171488809	1	1	0.828511191	unphased	0.570920372	0.689091926	0.828511191	0.0025	0.9975	0	0	2	8.83E-06	1	1	1	NA	NA	NA	NA
1351289	1206485193	PD9774b	1	55749923	G	T	-	-	-	-	-	-	30	0	0	54	6	11.11111111	0	0	NA	0	0	NA	1.591961208	1	0	0.408038792	1	1	0.591961208	unphased	0.671508235	1.134378783	0.591961208	0	0.9975	0.0025	0	2	3.29E-07	1	1	1	NA	NA	NA	NA
1351289	1206485273	PD9774b	1	57594605	G	T	DAB1	CCDS607.1	r.?	-	-	intronic	31	0	0	51	7	13.7254902	0	0	NA	0	0	NA	1.591961208	1	0	0.408038792	1	1	0.591961208	unphased	0.829510172	0.829510172	1	0.00375	0.99625	0	0	2	7.46E-09	1	1	1	NA	NA	NA	NA
1351289	1206485468	PD9774b	1	60552199	A	T	-	-	-	-	-	-	32	0	0	55	7	12.72727273	0	0	NA	0	0	NA	1.591961208	1	0	0.408038792	1	1	0.591961208	unphased	0.76918216	0.76918216	1	0.0025	0.9975	0	0	2	1.28E-08	1	1	1	NA	NA	NA	NA
1351289	1206485793	PD9774b	1	64788988	A	T	-	-	-	-	-	-	28	0	0	51	7	13.7254902	0	0	NA	0	0	NA	1.591961208	1	0	0.408038792	1	1	0.591961208	unphased	0.829510172	0.829510172	1	0.0025	0.99625	0.00125	0	2	7.46E-09	1	1	1	NA	NA	NA	NA
1351289	1206486002	PD9774b	1	67646797	C	T	IL23R	CCDS637.1	r.?	-	-	intronic	27	0	0	47	7	14.89361702	0	0	NA	0	0	NA	1.591961208	1	0	0.408038792	1	1	0.591961208	unphased	0.900106783	0.900106783	1	0.005	0.995	0	0	2	4.12E-09	1	1	1	NA	NA	NA	NA
1351289	1206486308	PD9774b	1	72068276	A	T	NEGR1	CCDS661.1	r.?	-	-	intronic	26	0	0	55	9	16.36363636	0	0	NA	0	0	NA	1.591961208	1	0	0.408038792	1	1	0.591961208	unphased	0.988948491	0.988948491	1	0	1	0	0	2	1.01E-11	1	1	1	NA	NA	NA	NA
1351289	1206486374	PD9774b	1	72932603	G	T	-	-	-	-	-	-	30	0	0	54	5	9.259259259	0	0	NA	0	0	NA	1.591961208	1	0	0.408038792	1	1	0.591961208	unphased	0.559590195	0.945315652	0.591961208	0.00125	0.9975	0.00125	0	2	8.06E-06	1	1	1	NA	NA	NA	NA
1351289	1206486716	PD9774b	1	77734379	G	T	-	-	-	-	-	-	33	0	0	60	7	11.66666667	0	0	NA	0	0	NA	1.591961208	1	0	0.408038792	1	1	0.591961208	unphased	0.705083646	1.191097722	0.591961208	0	0.9975	0.0025	0	2	2.39E-08	1	1	1	NA	NA	NA	NA
1351289	1206486804	PD9774b	1	78623753	A	T	-	-	-	-	-	-	34	0	0	47	5	10.63829787	141	0	0	128	33	25.78125	1.591961208	1	0	0.408038792	1	1	0.591961208	unphased	0.642933416	1.086107345	0.591961208	0.00125	0.9975	0.00125	0	2	4.02E-06	1	3.15E-46	1	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206486838	PD9774b	1	79293391	G	T	-	-	-	-	-	-	39	0	0	53	10	18.86792453	0	0	NA	0	0	NA	1.591961208	1	0	0.408038792	1	1	0.591961208	unphased	1.140297002	1.140297002	1	0	1	0	0	2	1.57E-13	1	1	1	NA	NA	NA	NA
1351289	1206486868	PD9774b	1	79746975	G	T	-	-	-	-	-	-	30	0	0	50	10	20	0	0	NA	0	0	NA	1.591961208	1	0	0.408038792	1	1	0.591961208	unphased	1.208714822	1.208714822	1	0	0.99875	0.00125	0	2	8.36E-14	1	1	1	NA	NA	NA	NA
1351289	1206486924	PD9774b	1	80300983	G	T	-	-	-	-	-	-	34	0	0	62	6	9.677419355	0	0	NA	0	0	NA	1.591961208	1	0	0.408038792	1	1	0.591961208	unphased	0.584862011	0.988007327	0.591961208	0.0025	0.9975	0	0	2	7.56E-07	1	1	1	NA	NA	NA	NA
1351289	1206486985	PD9774b	1	81173088	G	T	-	-	-	-	-	-	30	0	0	58	8	13.79310345	0	0	NA	0	0	NA	1.591961208	1	0	0.408038792	1	1	0.591961208	unphased	0.833596429	0.833596429	1	0.00625	0.99125	0.0025	0	2	5.99E-10	1	1	1	NA	NA	NA	NA
1351289	1206487369	PD9774b	1	85199331	G	T	-	-	-	-	-	-	27	0	0	51	4	7.843137255	0	0	NA	1	0	0	1.591961208	1	0	0.408038792	1	1	0.591961208	unphased	0.474005813	0.800737964	0.591961208	0.0025	0.9975	0	0	2	0.000129466	1	1	1	NA	NA	NA	NA
1351289	1206487743	PD9774b	1	90506864	A	T	-	-	-	-	-	-	37	0	0	60	7	11.66666667	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.519354839	0.519354839	1	0.01375	0.98625	0	0	2	2.39E-08	1	1	1	NA	NA	NA	NA
1351289	1206488241	PD9774b	1	97196818	G	T	PTBP2	CCDS754.1	r.?	-	-	intronic	43	0	0	49	6	12.24489796	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.545095458	0.545095458	1	0.01	0.99	0	0	2	1.82E-07	1	1	1	NA	NA	NA	NA
1351289	1206488302	PD9774b	1	98228461	A	T	DPYD	CCDS30777.1	r.?	-	-	intronic	42	0	0	56	4	7.142857143	0	0	NA	2	0	0	0	0	0	1	NA	NA	NA	unphased	0.31797235	0.31797235	1	0.06375	0.93625	0	0	2	0.000186538	1	1	1	NA	NA	NA	NA
1351289	1206488390	PD9774b	1	99411122	A	T	ENSG00000117598	CCDS30779.1	r.?	-	-	intronic	26	0	0	54	4	7.407407407	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.329749104	0.329749104	1	0.06125	0.93875	0	0	2	0.000161898	1	1	1	NA	NA	NA	NA
1351289	1206488702	PD9774b	1	103187521	C	T	-	-	-	-	-	-	43	0	0	49	5	10.20408163	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.454246215	0.454246215	1	0.0275	0.9725	0	0	2	4.96E-06	1	1	1	NA	NA	NA	NA
1351289	1206489293	PD9774b	1	110975962	G	T	-	-	-	-	-	-	33	0	0	39	5	12.82051282	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.570719603	0.570719603	1	0.00875	0.99125	0	0	2	1.56E-06	1	1	1	NA	NA	NA	NA
1351289	1206489624	PD9774b	1	114981002	C	T	TRIM33	CCDS872.1	r.?	-	-	intronic	31	0	0	50	10	20	0	0	NA	0	0	NA	1.624914468	1	0	0.375085532	1	1	0.624914468	unphased	1.215305474	1.215305474	1	0.00125	0.9975	0.00125	0	2	8.36E-14	1	1	1	NA	NA	NA	NA
1351289	1206489760	PD9774b	1	117047373	A	T	-	-	-	-	-	-	35	0	0	54	4	7.407407407	0	0	NA	0	0	NA	1.624914468	1	0	0.375085532	1	1	0.624914468	unphased	0.450113139	0.720279593	0.624914468	0.00125	0.99625	0.0025	0	2	0.000161898	1	1	1	NA	NA	NA	NA
1351289	1206489971	PD9774b	1	119184410	A	T	-	-	-	-	-	-	38	0	0	61	7	11.47540984	0	0	NA	0	0	NA	1.624914468	1	0	0.375085532	1	1	0.624914468	unphased	0.69730642	1.115842976	0.624914468	0	1	0	0	2	2.69E-08	1	1	1	NA	NA	NA	NA
1351289	1206490050	PD9774b	1	120448175	A	T	AL359752.1	ENST00000501411	r.?	-	-	intronic	31	0	0	65	12	18.46153846	0	0	NA	0	0	NA	1.624914468	1	0	0.375085532	1	1	0.624914468	unphased	1.121820438	1.121820438	1	0	1	0	0	2	7.70E-16	1	1	1	NA	NA	NA	NA
1351289	1206497690	PD9774b	1	143287513	C	T	-	-	-	-	-	-	30	0	0	51	8	15.68627451	0	0	NA	0	0	NA	1.624914468	1	0	0.375085532	1	1	0.624914468	unphased	0.953180764	0.953180764	1	0.00125	0.99875	0	0	2	2.05E-10	1	1	1	NA	NA	NA	NA
1351289	1206501664	PD9774b	1	146987361	A	T	-	-	-	-	-	-	28	0	0	41	4	9.756097561	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.629425649	0.629425649	1	0.0025	0.9975	0	0	2	5.46E-05	1	1	1	NA	NA	NA	NA
1351289	1206504012	PD9774b	1	152864224	A	T	-	-	-	-	-	-	35	0	0	69	10	14.49275362	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.935016363	0.935016363	1	0.00125	0.99875	0	0	2	2.54E-12	1	1	1	NA	NA	NA	NA
1351289	1206504118	PD9774b	1	153963214	A	T	NUP210L	CCDS41399.1	r.?	-	-	downstream	34	0	0	52	12	23.07692308	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.488833747	1.488833747	1	0	0.9925	0.0075	0	2	4.19E-17	1	1	1	NA	NA	NA	NA
1351289	1206504120	PD9774b	1	153988132	G	T	NUP210L	CCDS41399.1	r.?	-	-	intronic	35	0	0	39	7	17.94871795	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.157981803	1.157981803	1	0	0.99875	0.00125	0	2	1.04E-09	1	1	1	NA	NA	NA	NA
1351289	1206504160	PD9774b	1	154392079	G	T	IL6R	CCDS1067.1	r.?	-	-	intronic	42	0	0	37	6	16.21621622	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.046207498	1.046207498	1	0.00125	0.99625	0.0025	0	2	3.18E-08	1	1	1	NA	NA	NA	NA
1351289	1206504191	PD9774b	1	154749426	G	T	KCNN3	CCDS30880.1	r.?	-	-	intronic	33	0	0	60	5	8.333333333	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.537634409	0.537634409	1	0.0175	0.9825	0	0	2	1.36E-05	1	1	1	NA	NA	NA	NA
1351289	1206504413	PD9774b	1	157197607	G	T	-	-	-	-	-	-	32	0	0	46	7	15.2173913	2	0	0	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.981767181	0.981767181	1	0.00125	0.9975	0.00125	0	2	3.53E-09	1	1	1	NA	NA	NA	NA
1351289	1206504478	PD9774b	1	158036889	A	T	KIRREL	CCDS1172.2	r.?	-	-	intronic	27	0	0	53	10	18.86792453	0	0	NA	0	0	NA	1.428392334	1	0	0.571607666	1	1	0.428392334	unphased	1.10943495	1.10943495	1	0	1	0	0	2	1.57E-13	1	1	1	NA	NA	NA	NA
1351289	1206504526	PD9774b	1	158773837	A	T	-	-	-	-	-	-	34	0	0	50	4	8	0	0	NA	0	0	NA	1.428392334	1	0	0.571607666	1	1	0.428392334	unphased	0.470400419	1.098059844	0.428392334	0.00125	0.99625	0.0025	0	2	0.000119787	1	1	1	NA	NA	NA	NA
1351289	1206504568	PD9774b	1	159410284	A	T	OR10J1	CCDS1185.1	r.736a>u	c.736A>T	p.K246*	nonsense	36	0	0	48	5	10.41666667	0	0	NA	0	0	NA	1.428392334	1	0	0.571607666	1	1	0.428392334	unphased	0.612500546	0.612500546	1	0.00125	0.99875	0	0	2	4.47E-06	1	1	1	NA	NA	NA	NA
1351289	1206504848	PD9774b	1	161955055	A	T	OLFML2B	CCDS1236.1	r.?	-	-	intronic	39	0	0	53	5	9.433962264	0	0	NA	0	0	NA	1.428392334	1	0	0.571607666	1	1	0.428392334	unphased	0.554717475	1.294881891	0.428392334	0	0.99875	0.00125	0	2	7.34E-06	1	1	1	NA	NA	NA	NA
1351289	1206505016	PD9774b	1	163725217	C	T	-	-	-	-	-	-	31	0	0	53	11	20.75471698	0	0	NA	0	0	NA	1.428392334	1	0	0.571607666	1	1	0.428392334	unphased	1.220378445	1.220378445	1	0	0.9975	0.0025	0	2	3.07E-15	1	1	1	NA	NA	NA	NA
1351289	1206505198	PD9774b	1	166531185	G	T	-	-	-	-	-	-	35	0	0	43	4	9.302325581	0	0	NA	0	0	NA	1.428392334	1	0	0.571607666	1	1	0.428392334	unphased	0.546977231	1.276813772	0.428392334	0.00125	0.99375	0.005	0	2	6.60E-05	1	1	1	NA	NA	NA	NA
1351289	1206505298	PD9774b	1	167873904	C	T	ADCY10	CCDS1265.1	r.?	-	-	intronic	39	0	0	53	16	30.18867925	0	0	NA	0	0	NA	1.428392334	1	0	0.571607666	1	1	0.428392334	unphased	1.775095921	1.775095921	1	0	0.93	0.07	0	2	1.90E-24	1	1	1	NA	NA	NA	NA
1351289	1206505638	PD9774b	1	172708991	G	T	-	-	-	-	-	-	45	0	0	61	7	11.47540984	0	0	NA	0	0	NA	1.57042276	1	0	0.42957724	1	1	0.57042276	unphased	0.691053273	1.211475631	0.57042276	0.00125	0.99625	0.0025	0	2	2.69E-08	1	1	1	NA	NA	NA	NA
1351289	1206505692	PD9774b	1	173541591	G	T	SLC9A11	CCDS1308.1	r.?	-	-	intronic	36	0	0	44	5	11.36363636	0	0	NA	0	0	NA	1.57042276	1	0	0.42957724	1	1	0.57042276	unphased	0.684322234	1.199675543	0.57042276	0.00125	0.99375	0.005	0	2	2.88E-06	1	1	1	NA	NA	NA	NA
1351289	1206505749	PD9774b	1	174371476	A	T	RABGAP1L	CCDS1314.1	r.?	-	-	intronic	36	0	0	49	4	8.163265306	0	0	NA	0	0	NA	1.57042276	1	0	0.42957724	1	1	0.57042276	unphased	0.491594748	0.861807737	0.57042276	0.00625	0.99125	0.0025	0	2	0.000110643	1	1	1	NA	NA	NA	NA
1351289	1206505824	PD9774b	1	175741410	A	T	-	-	-	-	-	-	42	0	0	56	5	8.928571429	0	0	NA	0	0	NA	1.57042276	1	0	0.42957724	1	1	0.57042276	unphased	0.537681756	0.942602213	0.57042276	0	1	0	0	2	9.65E-06	1	1	1	NA	NA	NA	NA
1351289	1206505830	PD9774b	1	175902585	A	T	-	-	-	-	-	-	32	0	0	52	7	13.46153846	0	0	NA	0	0	NA	1.57042276	1	0	0.42957724	1	1	0.57042276	unphased	0.810658647	0.810658647	1	0.00125	0.99875	0	0	2	8.58E-09	1	1	1	NA	NA	NA	NA
1351289	1206505950	PD9774b	1	177557630	G	T	-	-	-	-	-	-	36	0	0	59	12	20.33898305	0	0	NA	0	0	NA	1.57042276	1	0	0.42957724	1	1	0.57042276	unphased	1.224820813	1.224820813	1	0	0.99625	0.00375	0	2	2.20E-16	1	1	1	NA	NA	NA	NA
1351289	1206505974	PD9774b	1	177850032	A	T	-	-	-	-	-	-	26	0	0	48	5	10.41666667	0	0	NA	0	0	NA	1.57042276	1	0	0.42957724	1	1	0.57042276	unphased	0.627295382	1.099702581	0.57042276	0.0025	0.9975	0	0	2	4.47E-06	1	1	1	NA	NA	NA	NA
1351289	1206506270	PD9774b	1	181577684	A	T	CACNA1E	ENST00000367573	r.?	-	-	intronic	21	0	0	45	4	8.888888889	0	0	NA	0	0	NA	1.57042276	1	0	0.42957724	1	1	0.57042276	unphased	0.535292059	0.938412869	0.57042276	0.00125	0.99875	0	0	2	7.91E-05	1	1	1	NA	NA	NA	NA
1351289	1206506624	PD9774b	1	186764166	G	T	-	-	-	-	-	-	41	0	0	49	6	12.24489796	0	0	NA	0	0	NA	1.57042276	1	0	0.42957724	1	1	0.57042276	unphased	0.737392122	0.737392122	1	0.00375	0.995	0.00125	0	2	1.82E-07	1	1	1	NA	NA	NA	NA
1351289	1206506724	PD9774b	1	187721587	G	T	-	-	-	-	-	-	34	0	0	51	7	13.7254902	0	0	NA	0	0	NA	1.57042276	1	0	0.42957724	1	1	0.57042276	unphased	0.826553915	0.826553915	1	0.00375	0.99625	0	0	2	7.46E-09	1	1	1	NA	NA	NA	NA
1351289	1206506789	PD9774b	1	188188195	G	T	-	-	-	-	-	-	39	0	0	50	9	18	0	0	NA	0	0	NA	1.57042276	1	0	0.42957724	1	1	0.57042276	unphased	1.083966419	1.083966419	1	0	1	0	0	2	4.07E-12	1	1	1	NA	NA	NA	NA
1351289	1206506982	PD9774b	1	191229854	A	T	-	-	-	-	-	-	25	0	0	44	6	13.63636364	0	0	NA	0	0	NA	1.57042276	1	0	0.42957724	1	1	0.57042276	unphased	0.821186681	0.821186681	1	0.0025	0.9975	0	0	2	9.37E-08	1	1	1	NA	NA	NA	NA
1351289	1206507011	PD9774b	1	191470555	C	T	-	-	-	-	-	-	34	0	0	50	6	12	0	0	NA	0	0	NA	1.57042276	1	0	0.42957724	1	1	0.57042276	unphased	0.72264428	1.266857374	0.57042276	0.0025	0.9975	0	0	2	2.06E-07	1	1	1	NA	NA	NA	NA
1351289	1206507045	PD9774b	1	192175730	A	T	-	-	-	-	-	-	35	0	0	62	9	14.51612903	0	0	NA	0	0	NA	1.57042276	1	0	0.42957724	1	1	0.57042276	unphased	0.874166467	0.874166467	1	0.00125	0.99875	0	0	2	3.12E-11	1	1	1	NA	NA	NA	NA
1351289	1206507090	PD9774b	1	192793547	G	T	-	-	-	-	-	-	37	0	0	57	8	14.03508772	0	0	NA	0	0	NA	1.57042276	1	0	0.42957724	1	1	0.57042276	unphased	0.845197988	0.845197988	1	0.005	0.995	0	0	2	5.19E-10	1	1	1	NA	NA	NA	NA
1351289	1206507091	PD9774b	1	192793548	G	T	-	-	-	-	-	-	37	0	0	58	9	15.51724138	0	0	NA	0	0	NA	1.57042276	1	0	0.42957724	1	1	0.57042276	unphased	0.93445381	0.93445381	1	0.00125	0.99875	0	0	2	1.67E-11	1	1	1	NA	NA	NA	NA
1351289	1206507185	PD9774b	1	193929323	C	T	-	-	-	-	-	-	30	0	0	53	5	9.433962264	0	0	NA	0	0	NA	1.57042276	1	0	0.42957724	1	1	0.57042276	unphased	0.568116572	0.995957055	0.57042276	0.00125	0.99875	0	0	2	7.34E-06	1	1	1	NA	NA	NA	NA
1351289	1206507237	PD9774b	1	194594191	G	T	-	-	-	-	-	-	31	0	0	48	6	12.5	0	0	NA	0	0	NA	1.57042276	1	0	0.42957724	1	1	0.57042276	unphased	0.752754458	0.752754458	1	0.00125	0.9975	0.00125	0	2	1.60E-07	1	1	1	NA	NA	NA	NA
1351289	1206507338	PD9774b	1	195687116	C	T	-	-	-	-	-	-	38	0	0	58	11	18.96551724	0	0	NA	0	0	NA	1.57042276	1	0	0.42957724	1	1	0.57042276	unphased	1.142110212	1.142110212	1	0	1	0	0	2	8.96E-15	1	1	1	NA	NA	NA	NA
1351289	1206507458	PD9774b	1	197139112	G	T	ZBTB41	CCDS30960.1	r.?	-	-	intronic	41	0	0	51	8	15.68627451	0	0	NA	0	0	NA	1.57042276	1	0	0.42957724	1	1	0.57042276	unphased	0.944633045	0.944633045	1	0	1	0	0	2	2.05E-10	1	1	1	NA	NA	NA	NA
1351289	1206507716	PD9774b	1	200125024	A	T	NR5A2	CCDS1401.1	r.?	-	-	intronic	34	0	0	57	10	17.54385965	0	0	NA	0	0	NA	1.57042276	1	0	0.42957724	1	1	0.57042276	unphased	1.056497485	1.056497485	1	0.00125	0.99875	0	0	2	3.40E-13	1	1	1	NA	NA	NA	NA
1351289	1206507745	PD9774b	1	200401970	G	T	-	-	-	-	-	-	27	0	0	53	10	18.86792453	0	0	NA	0	0	NA	1.57042276	1	0	0.42957724	1	1	0.57042276	unphased	1.136233144	1.136233144	1	0	1	0	0	2	1.57E-13	1	1	1	NA	NA	NA	NA
1351289	1206508175	PD9774b	1	204862413	A	T	NFASC	CCDS30982.1	r.?	-	-	intronic	41	0	0	47	4	8.510638298	2	0	0	0	0	NA	1.57042276	1	0	0.42957724	1	1	0.57042276	unphased	0.512513673	0.898480407	0.57042276	0.00125	0.9975	0.00125	0	2	9.39E-05	1	1	1	NA	NA	NA	NA
1351289	1206508382	PD9774b	1	207259174	C	T	PFKFB2	CCDS31003.1	r.?	-	-	downstream	30	0	0	60	14	23.33333333	0	0	NA	0	0	NA	1.57042276	1	0	0.42957724	1	1	0.57042276	unphased	1.405141655	1.405141655	1	0	0.9925	0.0075	0	2	8.54E-20	1	1	1	NA	NA	NA	NA
1351289	1206508408	PD9774b	1	207458259	C	T	-	-	-	-	-	-	42	0	0	62	9	14.51612903	0	0	NA	0	0	NA	1.57042276	1	0	0.42957724	1	1	0.57042276	unphased	0.874166467	0.874166467	1	0.0025	0.9975	0	0	2	3.12E-11	1	1	1	NA	NA	NA	NA
1351289	1206508477	PD9774b	1	208409671	C	T	PLXNA2	CCDS31013.1	r.?	-	-	intronic	48	0	0	54	5	9.259259259	1	0	0	0	0	NA	1.57042276	1	0	0.42957724	1	1	0.57042276	unphased	0.557595895	0.977513406	0.57042276	0	0.99875	0.00125	0	2	8.06E-06	1	1	1	NA	NA	NA	NA
1351289	1206508553	PD9774b	1	209491609	A	T	-	-	-	-	-	-	33	0	0	56	5	8.928571429	0	0	NA	0	0	NA	1.57042276	1	0	0.42957724	1	1	0.57042276	unphased	0.537681756	0.942602213	0.57042276	0.0025	0.99375	0.00375	0	2	9.65E-06	1	1	1	NA	NA	NA	NA
1351289	1206508643	PD9774b	1	210653237	G	T	HHAT	CCDS1495.1	r.?	-	-	intronic	33	0	0	51	7	13.7254902	0	0	NA	0	0	NA	1.57042276	1	0	0.42957724	1	1	0.57042276	unphased	0.826553915	0.826553915	1	0.00125	0.99625	0.0025	0	2	7.46E-09	1	1	1	NA	NA	NA	NA
1351289	1206508680	PD9774b	1	211172631	G	T	KCNH1	CCDS31015.1	r.?	-	-	intronic	33	0	0	58	11	18.96551724	0	0	NA	0	0	NA	1.57042276	1	0	0.42957724	1	1	0.57042276	unphased	1.142110212	1.142110212	1	0	0.9975	0.0025	0	2	8.96E-15	1	1	1	NA	NA	NA	NA
1351289	1206508732	PD9774b	1	211623606	C	T	-	-	-	-	-	-	28	0	0	44	10	22.72727273	0	0	NA	0	0	NA	1.57042276	1	0	0.42957724	1	1	0.57042276	unphased	1.368644469	1.368644469	1	0	0.99375	0.00625	0	2	2.08E-14	1	1	1	NA	NA	NA	NA
1351289	1206508754	PD9774b	1	211802756	A	T	-	-	-	-	-	-	21	0	0	52	5	9.615384615	0	0	NA	0	0	NA	1.57042276	1	0	0.42957724	1	1	0.57042276	unphased	0.579041891	1.015110075	0.57042276	0	0.99875	0.00125	0	2	6.68E-06	1	1	1	NA	NA	NA	NA
1351289	1206509032	PD9774b	1	214797634	C	T	CENPF	CCDS31023.1	r.?	-	-	intronic	41	0	0	53	8	15.09433962	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.822884967	0.822884967	1	0.00375	0.99625	0	0	2	2.83E-10	1	1	1	NA	NA	NA	NA
1351289	1206509050	PD9774b	1	215115417	C	T	-	-	-	-	-	-	33	0	0	55	5	9.090909091	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.495601173	0.495601173	1	0.0075	0.9925	0	0	2	8.83E-06	1	1	1	NA	NA	NA	NA
1351289	1206509080	PD9774b	1	215455752	G	T	-	-	-	-	-	-	60	0	0	68	14	20.58823529	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.122390892	1.122390892	1	0	1	0	0	2	5.84E-19	1	1	1	NA	NA	NA	NA
1351289	1206509082	PD9774b	1	215473006	C	T	-	-	-	-	-	-	30	0	0	69	18	26.08695652	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.422159888	1.422159888	1	0	0.99375	0.00625	0	2	5.16E-26	1	1	1	NA	NA	NA	NA
1351289	1206509107	PD9774b	1	215872887	A	T	USH2A	CCDS31025.1	r.?	-	-	intronic	39	0	0	47	7	14.89361702	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.811942347	0.811942347	1	0.00375	0.99625	0	0	2	4.12E-09	1	1	1	NA	NA	NA	NA
1351289	1206509677	PD9774b	1	223181175	G	T	DISP1	CCDS1536.1	r.?	-	-	downstream	32	0	0	41	4	9.756097561	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.531864673	0.531864673	1	0.00375	0.99625	0	0	2	5.46E-05	1	1	1	NA	NA	NA	NA
1351289	1206509742	PD9774b	1	224080328	C	T	-	-	-	-	-	-	27	0	0	47	12	25.53191489	2	0	0	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.391901167	1.391901167	1	0.00125	0.995	0.00375	0	2	1.09E-17	1	1	1	NA	NA	NA	NA
1351289	1206509903	PD9774b	1	224881168	C	T	CNIH3	CCDS1544.1	r.?	-	-	intronic	39	0	0	55	9	16.36363636	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.892082111	0.892082111	1	0.00125	0.9975	0.00125	0	2	1.01E-11	1	1	1	NA	NA	NA	NA
1351289	1206510210	PD9774b	1	227668036	G	T	-	-	-	-	-	-	33	0	0	44	13	29.54545455	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.610703812	1.610703812	1	0	0.98	0.02	0	2	5.49E-20	1	1	1	NA	NA	NA	NA
1351289	1206510436	PD9774b	1	230446250	G	T	-	-	-	-	-	-	33	0	0	62	5	8.064516129	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.439646202	0.439646202	1	0.02125	0.97875	0	0	2	1.60E-05	1	1	1	NA	NA	NA	NA
1351289	1206510952	PD9774b	1	235690946	A	T	-	-	-	-	-	-	34	0	0	48	11	22.91666667	0	0	NA	0	0	NA	2.736337341	1	1	0.263662659	2	1	0.736337341	unphased	1.647238598	1.647238598	1	0	0.98	0.02	0	2	9.31E-16	1	1	1	NA	NA	NA	NA
1351289	1206510988	PD9774b	1	236109360	C	T	-	-	-	-	-	-	30	0	0	56	14	25	0	0	NA	0	0	NA	2.736337341	1	1	0.263662659	2	1	0.736337341	unphased	1.796987561	1.034929975	1.736337341	0	1	0	0	2	2.91E-20	1	1	1	NA	NA	NA	NA
1351289	1206511023	PD9774b	1	236358003	A	T	GPR137B	CCDS1609.1	r.?	-	-	intronic	28	0	0	58	5	8.620689655	0	0	NA	0	0	NA	2.736337341	1	1	0.263662659	2	1	0.736337341	unphased	0.619650883	0.84153125	0.736337341	0.0025	0.9975	0	0	2	1.15E-05	1	1	1	NA	NA	NA	NA
1351289	1206511056	PD9774b	1	236518743	C	T	EDARADD	ENST00000439430	r.?	-	-	intronic	35	0	0	37	5	13.51351351	0	0	NA	0	0	NA	2.736337341	1	1	0.263662659	2	1	0.736337341	unphased	0.971344628	0.971344628	1	0.0025	0.995	0.0025	0	2	1.19E-06	1	1	1	NA	NA	NA	NA
1351289	1206511383	PD9774b	1	239474595	G	T	-	-	-	-	-	-	40	0	0	63	18	28.57142857	0	0	NA	0	0	NA	2.736337341	1	1	0.263662659	2	1	0.736337341	unphased	2.05370007	1.182777114	1.736337341	0	0.99875	0.00125	0	2	7.98E-27	1	1	1	NA	NA	NA	NA
1351289	1206511551	PD9774b	1	240718002	A	T	GREM2	CCDS31070.1	r.?	-	-	intronic	46	0	0	54	10	18.51851852	0	0	NA	0	0	NA	2.736337341	1	1	0.263662659	2	1	0.736337341	unphased	1.331101897	1.331101897	1	0	0.99625	0.00375	0	2	1.91E-13	1	1	1	NA	NA	NA	NA
1351289	1206511583	PD9774b	1	240971051	G	T	RGS7	CCDS31071.1	r.?	-	-	intronic	29	0	0	53	7	13.20754717	168	0	0	199	9	4.522613065	2.736337341	1	1	0.263662659	2	1	0.736337341	unphased	0.949351919	0.949351919	1	0	1	0	0	2	9.85E-09	1	9.34E-07	1	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206511800	PD9774b	1	242440579	A	T	PLD5	CCDS1621.1	r.?	-	-	intronic	16	0	0	42	8	19.04761905	0	0	NA	0	0	NA	2.736337341	1	1	0.263662659	2	1	0.736337341	unphased	1.36913338	1.36913338	1	0	0.995	0.005	0	2	3.96E-11	1	1	1	NA	NA	NA	NA
1351289	1206511859	PD9774b	1	242846105	G	T	-	-	-	-	-	-	34	0	0	58	6	10.34482759	0	0	NA	0	0	NA	2.736337341	1	1	0.263662659	2	1	0.736337341	unphased	0.74358106	1.0098375	0.736337341	0	0.9975	0.0025	0	2	5.06E-07	1	1	1	NA	NA	NA	NA
1351289	1206511993	PD9774b	1	243999043	G	T	AKT3	CCDS31077.1	r.?	-	-	intronic	29	0	0	72	20	27.77777778	0	0	NA	0	0	NA	2.736337341	1	1	0.263662659	2	1	0.736337341	unphased	1.996652846	1.149922194	1.736337341	0	1	0	0	2	2.32E-29	1	1	1	NA	NA	NA	NA
1351289	1206512184	PD9774b	1	245472238	A	T	KIF26B	CCDS44342.1	r.?	-	-	intronic	33	0	0	58	4	6.896551724	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	0.513904338	0.513904338	1	0.00875	0.99125	0	0	2	0.000213772	1	1	1	NA	NA	NA	NA
1351289	1206512227	PD9774b	1	245852066	C	T	KIF26B	CCDS44342.1	r.5781c>u	c.5781C>T	p.G1927G	silent	34	0	0	16	5	31.25	94	0	0	8	3	37.5	3	2	1	1	NA	NA	NA	unphased	2.328629032	1.164314516	2	0	0.99875	0.00125	0	2	1.30E-08	1	6.87E-06	1	NA	NA	NA	NA
1351289	1206512395	PD9774b	1	246867613	A	T	-	-	-	-	-	-	35	0	0	64	7	10.9375	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	0.815020161	0.815020161	1	0.005	0.995	0	0	2	3.78E-08	1	1	1	NA	NA	NA	NA
1351289	1206513097	PD9774b	10	1707576	C	T	ADARB2	CCDS7058.1	r.?	-	-	intronic	33	0	0	61	12	19.67213115	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	1.465891063	1.465891063	1	0	0.9975	0.0025	0	2	3.39E-16	1	1	1	NA	NA	NA	NA
1351289	1206513151	PD9774b	10	2172296	G	T	-	-	-	-	-	-	33	0	0	73	15	20.54794521	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	1.531153336	1.531153336	1	0	0.99125	0.00875	0	2	3.38E-20	1	1	1	NA	NA	NA	NA
1351289	1206513248	PD9774b	10	2673293	G	T	-	-	-	-	-	-	41	0	0	66	18	27.27272727	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	2.032258065	1.016129032	2	0	1	0	0	2	2.08E-26	1	1	1	NA	NA	NA	NA
1351289	1206513362	PD9774b	10	3765440	G	T	-	-	-	-	-	-	23	0	0	57	6	10.52631579	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	0.784380306	0.784380306	1	0	1	0	0	2	4.56E-07	1	1	1	NA	NA	NA	NA
1351289	1206513513	PD9774b	10	5138938	A	T	AKR1C3	CCDS7063.1	r.?	-	-	intronic	41	0	0	51	5	9.803921569	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	0.730550285	0.730550285	1	0.00125	0.99875	0	0	2	6.06E-06	1	1	1	NA	NA	NA	NA
1351289	1206513541	PD9774b	10	5283186	G	T	-	-	-	-	-	-	21	0	0	66	19	28.78787879	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	2.14516129	1.072580645	2	0	1	0	0	2	2.64E-28	1	1	1	NA	NA	NA	NA
1351289	1206513733	PD9774b	10	6471161	G	T	PRKCQ	CCDS7079.1	r.?	-	-	intronic	33	0	0	40	7	17.5	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	1.066834444	1.066834444	1	0	0.9975	0.0025	0	2	1.26E-09	1	1	1	NA	NA	NA	NA
1351289	1206513770	PD9774b	10	6775837	G	T	-	-	-	-	-	-	35	0	0	59	9	15.25423729	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.929928329	0.929928329	1	0.00125	0.9975	0.00125	0	2	1.96E-11	1	1	1	NA	NA	NA	NA
1351289	1206514255	PD9774b	10	10415238	C	T	-	-	-	-	-	-	43	0	0	51	6	11.76470588	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.717199626	1.112655163	0.64458392	0.00125	0.9975	0.00125	0	2	2.32E-07	1	1	1	NA	NA	NA	NA
1351289	1206514275	PD9774b	10	10716413	G	T	-	-	-	-	-	-	39	0	0	63	6	9.523809524	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.580590174	0.900720846	0.64458392	0.00125	0.9975	0.00125	0	2	8.32E-07	1	1	1	NA	NA	NA	NA
1351289	1206514286	PD9774b	10	10771856	C	T	-	-	-	-	-	-	43	0	0	54	6	11.11111111	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.677355203	1.050840987	0.64458392	0.0025	0.9975	0	0	2	3.29E-07	1	1	1	NA	NA	NA	NA
1351289	1206514402	PD9774b	10	12157280	G	T	DHTKD1	CCDS7087.1	r.?	-	-	intronic	33	0	0	47	8	17.0212766	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	1.037650523	1.037650523	1	0.0025	0.9975	0	0	2	1.03E-10	1	1	1	NA	NA	NA	NA
1351289	1206514554	PD9774b	10	13185101	A	T	OPTN	CCDS7094.1	r.?	-	-	downstream	34	0	0	53	5	9.433962264	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.575112908	0.89222348	0.64458392	0.0025	0.99625	0.00125	0	2	7.34E-06	1	1	1	NA	NA	NA	NA
1351289	1206514581	PD9774b	10	13416351	C	T	-	-	-	-	-	-	32	0	0	45	8	17.77777778	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	1.083768324	1.083768324	1	0.00125	0.99875	0	0	2	7.14E-11	1	1	1	NA	NA	NA	NA
1351289	1206514591	PD9774b	10	13508742	C	T	BEND7	CCDS7099.1	r.?	-	-	intronic	36	0	0	59	9	15.25423729	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.929928329	0.929928329	1	0	1	0	0	2	1.96E-11	1	1	1	NA	NA	NA	NA
1351289	1206514694	PD9774b	10	14300980	A	T	FRMD4A	CCDS7101.1	r.?	-	-	intronic	37	0	0	62	9	14.51612903	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.884931797	0.884931797	1	0.0025	0.9975	0	0	2	3.12E-11	1	1	1	NA	NA	NA	NA
1351289	1206514954	PD9774b	10	16970413	C	T	CUBN	CCDS7113.1	r.?	-	-	intronic	42	0	0	55	8	14.54545455	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.886719538	0.886719538	1	0	1	0	0	2	3.86E-10	1	1	1	NA	NA	NA	NA
1351289	1206515066	PD9774b	10	18525083	A	T	CACNB2	CCDS7127.1	r.?	-	-	intronic	28	0	0	30	3	10	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.609619682	0.945756888	0.64458392	0.0025	0.99625	0.00125	0	2	0.000458697	1	1	1	NA	NA	NA	NA
1351289	1206515149	PD9774b	10	19111694	G	T	-	-	-	-	-	-	31	0	0	53	5	9.433962264	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.575112908	0.89222348	0.64458392	0	1	0	0	2	7.34E-06	1	1	1	NA	NA	NA	NA
1351289	1206515162	PD9774b	10	19282336	A	T	-	-	-	-	-	-	30	0	0	42	4	9.523809524	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.580590174	0.900720846	0.64458392	0.00125	0.99875	0	0	2	6.01E-05	1	1	1	NA	NA	NA	NA
1351289	1206515164	PD9774b	10	19293807	A	T	-	-	-	-	-	-	32	0	0	34	6	17.64705882	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	1.075799439	1.075799439	1	0.0025	0.99625	0.00125	0	2	1.86E-08	1	1	1	NA	NA	NA	NA
1351289	1206515187	PD9774b	10	19533638	G	T	C10orf112	ENST00000377266	r.?	-	-	intronic	36	0	0	62	7	11.29032258	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.688280286	1.067790035	0.64458392	0	1	0	0	2	3.02E-08	1	1	1	NA	NA	NA	NA
1351289	1206515313	PD9774b	10	20970089	C	T	-	-	-	-	-	-	35	0	0	49	8	16.32653061	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.99529744	0.99529744	1	0.00125	0.99875	0	0	2	1.47E-10	1	1	1	NA	NA	NA	NA
1351289	1206515393	PD9774b	10	21819863	G	T	MLLT10	CCDS7135.1	r.?	-	-	upstream	31	0	0	55	9	16.36363636	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.99755948	0.99755948	1	0	1	0	0	2	1.01E-11	1	1	1	NA	NA	NA	NA
1351289	1206515474	PD9774b	10	22745612	C	T	-	-	-	-	-	-	30	0	0	52	10	19.23076923	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	1.172345543	1.172345543	1	0.00125	0.99625	0.0025	0	2	1.28E-13	1	1	1	NA	NA	NA	NA
1351289	1206515518	PD9774b	10	23231194	G	T	ARMC3	CCDS7142.1	r.?	-	-	intronic	28	0	0	55	7	12.72727273	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.775879596	1.203690585	0.64458392	0	0.99875	0.00125	0	2	1.28E-08	1	1	1	NA	NA	NA	NA
1351289	1206515692	PD9774b	10	25379833	G	T	-	-	-	-	-	-	40	0	0	59	6	10.16949153	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.619952219	0.961786666	0.64458392	0	1	0	0	2	5.61E-07	1	1	1	NA	NA	NA	NA
1351289	1206515703	PD9774b	10	25518554	A	T	GPR158	CCDS31166.1	r.?	-	-	intronic	30	0	0	63	9	14.28571429	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.87088526	0.87088526	1	0.00125	0.99875	0	0	2	3.62E-11	1	1	1	NA	NA	NA	NA
1351289	1206515736	PD9774b	10	25862448	A	T	GPR158	CCDS31166.1	r.?	-	-	intronic	32	0	0	62	10	16.12903226	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.983257552	0.983257552	1	0	1	0	0	2	8.29E-13	1	1	1	NA	NA	NA	NA
1351289	1206515754	PD9774b	10	26125831	C	T	-	-	-	-	-	-	39	0	0	52	9	17.30769231	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	1.055110989	1.055110989	1	0	0.99875	0.00125	0	2	5.92E-12	1	1	1	NA	NA	NA	NA
1351289	1206515775	PD9774b	10	26286322	A	T	MYO3A	CCDS7148.1	r.?	-	-	intronic	39	0	0	72	4	5.555555556	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.338677601	0.525420494	0.64458392	0.00875	0.99125	0	0	2	0.000490365	1	1	1	NA	NA	NA	NA
1351289	1206515799	PD9774b	10	26408258	C	T	MYO3A	CCDS7148.1	r.?	-	-	intronic	33	0	0	64	7	10.9375	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.666771528	1.034421597	0.64458392	0.00125	0.99875	0	0	2	3.78E-08	1	1	1	NA	NA	NA	NA
1351289	1206515804	PD9774b	10	26449702	A	T	MYO3A	CCDS7148.1	r.?	-	-	intronic	34	0	0	49	8	16.32653061	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.99529744	0.99529744	1	0.00125	0.99875	0	0	2	1.47E-10	1	1	1	NA	NA	NA	NA
1351289	1206515907	PD9774b	10	27110840	G	T	ABI1	CCDS7150.1	r.?	-	-	intronic	27	0	0	52	10	19.23076923	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	1.172345543	1.172345543	1	0	0.99875	0.00125	0	2	1.28E-13	1	1	1	NA	NA	NA	NA
1351289	1206516049	PD9774b	10	28327629	C	T	-	-	-	-	-	-	33	0	0	49	8	16.32653061	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.99529744	0.99529744	1	0	1	0	0	2	1.47E-10	1	1	1	NA	NA	NA	NA
1351289	1206516219	PD9774b	10	30036220	G	T	AL160060.2	ENST00000502624	r.?	-	-	intronic	24	0	0	45	7	15.55555556	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.948297284	0.948297284	1	0	0.9975	0.0025	0	2	3.00E-09	1	1	1	NA	NA	NA	NA
1351289	1206516315	PD9774b	10	30881744	C	T	-	-	-	-	-	-	27	0	0	54	8	14.81481481	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.90314027	0.90314027	1	0	1	0	0	2	3.31E-10	1	1	1	NA	NA	NA	NA
1351289	1206516591	PD9774b	10	33785732	G	T	-	-	-	-	-	-	26	0	0	65	6	9.230769231	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.562725861	0.873006359	0.64458392	0.0025	0.99625	0.00125	0	2	1.00E-06	1	1	1	NA	NA	NA	NA
1351289	1206516643	PD9774b	10	34279505	C	T	-	-	-	-	-	-	47	0	0	60	6	10	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.609619682	0.945756888	0.64458392	0	1	0	0	2	6.21E-07	1	1	1	NA	NA	NA	NA
1351289	1206516813	PD9774b	10	35963573	C	T	-	-	-	-	-	-	34	0	0	73	14	19.17808219	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	1.169133637	1.169133637	1	0	0.9975	0.0025	0	2	1.71E-18	1	1	1	NA	NA	NA	NA
1351289	1206516817	PD9774b	10	36003672	C	T	-	-	-	-	-	-	37	0	0	56	12	21.42857143	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	1.306327891	1.306327891	1	0	0.995	0.005	0	2	1.11E-16	1	1	1	NA	NA	NA	NA
1351289	1206516819	PD9774b	10	36028541	C	T	-	-	-	-	-	-	27	0	0	47	8	17.0212766	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	1.037650523	1.037650523	1	0.0025	0.99625	0.00125	0	2	1.03E-10	1	1	1	NA	NA	NA	NA
1351289	1206516918	PD9774b	10	37044446	G	T	-	-	-	-	-	-	41	0	0	62	11	17.74193548	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	1.081583307	1.081583307	1	0	1	0	0	2	1.96E-14	1	1	1	NA	NA	NA	NA
1351289	1206517309	PD9774b	10	38921002	A	T	-	-	-	-	-	-	33	0	0	60	11	18.33333333	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	1.117636084	1.117636084	1	0	0.99875	0.00125	0	2	1.34E-14	1	1	1	NA	NA	NA	NA
1351289	1206521277	PD9774b	10	43547916	A	T	-	-	-	-	-	-	33	0	0	51	6	11.76470588	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.717199626	1.112655163	0.64458392	0	0.99875	0.00125	0	2	2.32E-07	1	1	1	NA	NA	NA	NA
1351289	1206521499	PD9774b	10	47056203	C	T	-	-	-	-	-	-	81	0	0	105	8	7.619047619	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.464472139	0.720576677	0.64458392	0.0025	0.99625	0.00125	0	2	7.08E-08	1	1	1	NA	NA	NA	NA
1351289	1206521563	PD9774b	10	47592733	A	T	-	-	-	-	-	-	36	0	0	46	7	15.2173913	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.927682125	0.927682125	1	0.0025	0.99625	0.00125	0	2	3.53E-09	1	1	1	NA	NA	NA	NA
1351289	1206521630	PD9774b	10	49251368	A	T	-	-	-	-	-	-	36	0	0	52	4	7.692307692	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.468938217	0.727505299	0.64458392	0.0025	0.99625	0.00125	0	2	0.000139698	1	1	1	NA	NA	NA	NA
1351289	1206521643	PD9774b	10	49585046	G	T	MAPK8	CCDS7224.1	r.?	-	-	intronic	33	0	0	46	8	17.39130435	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	1.060208143	1.060208143	1	0.00125	0.99875	0	0	2	8.61E-11	1	1	1	NA	NA	NA	NA
1351289	1206521888	PD9774b	10	53490342	G	T	PRKG1	CCDS7244.1	r.?	-	-	intronic	30	0	0	55	11	20	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	1.219239365	1.219239365	1	0	0.99875	0.00125	0	2	4.77E-15	1	1	1	NA	NA	NA	NA
1351289	1206521918	PD9774b	10	53875679	C	T	PRKG1	CCDS7244.1	r.?	-	-	intronic	30	0	0	61	7	11.47540984	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.69956357	1.08529479	0.64458392	0	1	0	0	2	2.69E-08	1	1	1	NA	NA	NA	NA
1351289	1206521982	PD9774b	10	54501714	A	T	-	-	-	-	-	-	35	0	0	47	6	12.76595745	178	0	0	109	7	6.422018349	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.778237892	1.207349219	0.64458392	0	1	0	0	2	1.41E-07	1	1.49E-06	1	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206522022	PD9774b	10	54999830	G	T	-	-	-	-	-	-	27	0	0	49	9	18.36734694	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	1.119709621	1.119709621	1	0	1	0	0	2	3.35E-12	1	1	1	NA	NA	NA	NA
1351289	1206522087	PD9774b	10	55757847	G	T	PCDH15	CCDS44404.1	r.?	-	-	intronic	36	0	0	52	9	17.30769231	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	1.055110989	1.055110989	1	0	1	0	0	2	5.92E-12	1	1	1	NA	NA	NA	NA
1351289	1206522140	PD9774b	10	56222767	G	T	PCDH15	CCDS44404.1	r.?	-	-	intronic	38	0	0	62	13	20.96774194	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	1.278234818	1.278234818	1	0	1	0	0	2	8.08E-18	1	1	1	NA	NA	NA	NA
1351289	1206522261	PD9774b	10	57591818	A	T	-	-	-	-	-	-	45	0	0	56	8	14.28571429	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.87088526	0.87088526	1	0.0025	0.9975	0	0	2	4.48E-10	1	1	1	NA	NA	NA	NA
1351289	1206522295	PD9774b	10	57825706	A	T	-	-	-	-	-	-	27	0	0	40	3	7.5	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.457214762	0.709317666	0.64458392	0.0025	0.9975	0	0	2	0.001075403	1	1	1	NA	NA	NA	NA
1351289	1206522543	PD9774b	10	60557248	C	T	BICC1	CCDS31206.1	r.?	-	-	intronic	39	0	0	52	6	11.53846154	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.703407326	1.091257948	0.64458392	0	1	0	0	2	2.61E-07	1	1	1	NA	NA	NA	NA
1351289	1206522546	PD9774b	10	60573926	C	T	BICC1	CCDS31206.1	r.?	-	-	intronic	33	0	0	39	4	10.25641026	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.625250956	0.970007065	0.64458392	0.00375	0.99375	0.0025	0	2	4.47E-05	1	1	1	NA	NA	NA	NA
1351289	1206522588	PD9774b	10	61220471	G	T	-	-	-	-	-	-	29	0	0	42	5	11.9047619	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.725737717	1.125901058	0.64458392	0.00125	0.99875	0	0	2	2.28E-06	1	1	1	NA	NA	NA	NA
1351289	1206522974	PD9774b	10	65833179	A	T	-	-	-	-	-	-	34	0	0	58	8	13.79310345	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.840854734	0.840854734	1	0.00125	0.9975	0.00125	0	2	5.99E-10	1	1	1	NA	NA	NA	NA
1351289	1206523205	PD9774b	10	68434101	C	T	CTNNA3	CCDS7269.1	r.?	-	-	intronic	30	0	0	59	5	8.474576271	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.516626849	0.801488889	0.64458392	0.00375	0.99625	0	0	2	1.25E-05	1	1	1	NA	NA	NA	NA
1351289	1206523298	PD9774b	10	69604097	G	T	-	-	-	-	-	-	27	0	0	40	4	10	0	0	NA	0	0	NA	1.64458392	1	0	0.35541608	1	1	0.64458392	unphased	0.609619682	0.945756888	0.64458392	0.0025	0.99625	0.00125	0	2	4.95E-05	1	1	1	NA	NA	NA	NA
1351289	1206523527	PD9774b	10	72104702	C	T	LRRC20	CCDS7302.1	r.?	-	-	intronic	44	0	0	58	10	17.24137931	3	0	0	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.112347052	1.112347052	1	0.00125	0.99625	0.0025	0	2	4.10E-13	1	1	1	NA	NA	NA	NA
1351289	1206523584	PD9774b	10	72816987	G	T	-	-	-	-	-	-	25	0	0	44	5	11.36363636	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.73313783	0.73313783	1	0	1	0	0	2	2.88E-06	1	1	1	NA	NA	NA	NA
1351289	1206523641	PD9774b	10	73475357	G	T	C10orf105	CCDS44430.1	r.860c>a	c.?	p.?	3'UTR variant	28	0	0	49	11	22.44897959	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.448321264	1.448321264	1	0	0.995	0.005	0	2	1.19E-15	1	1	1	NA	NA	NA	NA
1351289	1206523707	PD9774b	10	74102581	C	T	DNAJB12	CCDS7316.2	r.?	-	-	intronic	35	0	0	57	5	8.771929825	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.565930956	0.565930956	1	0.0075	0.9925	0	0	2	1.05E-05	1	1	1	NA	NA	NA	NA
1351289	1206523786	PD9774b	10	74981616	G	T	FAM149B1	CCDS44435.1	r.?	-	-	intronic	42	0	0	58	7	12.06896552	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.778642937	0.778642937	1	0	1	0	0	2	1.88E-08	1	1	1	NA	NA	NA	NA
1351289	1206523832	PD9774b	10	75514041	C	T	SEC24C	CCDS7332.1	r.?	-	-	intronic	29	0	0	59	10	16.94915254	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.093493712	1.093493712	1	0.00125	0.99875	0	0	2	4.91E-13	1	1	1	NA	NA	NA	NA
1351289	1206523984	PD9774b	10	77911353	C	T	C10orf11	CCDS7351.1	r.?	-	-	intronic	41	0	0	59	9	15.25423729	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.984144341	0.984144341	1	0	0.9975	0.0025	0	2	1.96E-11	1	1	1	NA	NA	NA	NA
1351289	1206524588	PD9774b	10	86363247	G	T	-	-	-	-	-	-	38	0	0	55	9	16.36363636	0	0	NA	0	0	NA	0.742652787	0	0	0.257347213	1	0	0.742652787	unphased	0.849970749	1.144506241	0.742652787	0	0.99875	0.00125	0	2	1.01E-11	1	1	1	NA	NA	NA	NA
1351289	1206524619	PD9774b	10	86963475	A	T	-	-	-	-	-	-	33	0	0	64	11	17.1875	0	0	NA	0	0	NA	0.742652787	0	0	0.257347213	1	0	0.742652787	unphased	0.892764415	0.892764415	1	0	1	0	0	2	2.85E-14	1	1	1	NA	NA	NA	NA
1351289	1206524621	PD9774b	10	86963481	G	T	-	-	-	-	-	-	34	0	0	64	13	20.3125	0	0	NA	0	0	NA	0.742652787	0	0	0.257347213	1	0	0.742652787	unphased	1.055085218	1.055085218	1	0	0.99875	0.00125	0	2	1.26E-17	1	1	1	NA	NA	NA	NA
1351289	1206524643	PD9774b	10	87429101	G	T	GRID1	CCDS31236.1	r.?	-	-	intronic	24	0	0	44	4	9.090909091	2	0	0	0	0	NA	0.742652787	0	0	0.257347213	1	0	0.742652787	unphased	0.472205972	0.635836801	0.742652787	0.005	0.995	0	0	2	7.23E-05	1	1	1	NA	NA	NA	NA
1351289	1206524665	PD9774b	10	87868759	C	T	GRID1	CCDS31236.1	r.?	-	-	intronic	36	0	0	52	8	15.38461538	0	0	NA	0	0	NA	0.742652787	0	0	0.257347213	1	0	0.742652787	unphased	0.799117798	1.076031509	0.742652787	0	0.995	0.005	0	2	2.42E-10	1	1	1	NA	NA	NA	NA
1351289	1206525092	PD9774b	10	94573286	C	T	-	-	-	-	-	-	42	0	0	57	6	10.52631579	0	0	NA	0	0	NA	0.728995003	0	0	0.271004997	1	0	0.728995003	unphased	0.545327148	0.748053341	0.728995003	0.00375	0.99625	0	0	2	4.56E-07	1	1	1	NA	NA	NA	NA
1351289	1206525120	PD9774b	10	94824774	C	T	CYP26C1	CCDS7425.1	r.?	-	-	intronic	41	0	0	36	4	11.11111111	0	0	NA	0	0	NA	0.728995003	0	0	0.271004997	1	0	0.728995003	unphased	0.575623101	0.78961186	0.728995003	0.0025	0.9975	0	0	2	3.24E-05	1	1	1	NA	NA	NA	NA
1351289	1206526113	PD9774b	10	107303816	C	T	-	-	-	-	-	-	36	0	0	46	5	10.86956522	0	0	NA	0	0	NA	0.728995003	0	0	0.271004997	1	0	0.728995003	unphased	0.563109555	0.772446385	0.728995003	0.00375	0.995	0.00125	0	2	3.61E-06	1	1	1	NA	NA	NA	NA
1351289	1206526174	PD9774b	10	108120347	G	T	-	-	-	-	-	-	28	0	0	41	6	14.63414634	0	0	NA	0	0	NA	0.728995003	0	0	0.271004997	1	0	0.728995003	unphased	0.758137742	1.039976596	0.728995003	0.0025	0.99625	0.00125	0	2	6.05E-08	1	1	1	NA	NA	NA	NA
1351289	1206526340	PD9774b	10	110484083	G	T	-	-	-	-	-	-	32	0	0	43	5	11.62790698	0	0	NA	0	0	NA	0.728995003	0	0	0.271004997	1	0	0.728995003	unphased	0.602396268	0.826337993	0.728995003	0	1	0	0	2	2.57E-06	1	1	1	NA	NA	NA	NA
1351289	1206526354	PD9774b	10	110898738	C	T	-	-	-	-	-	-	36	0	0	45	6	13.33333333	0	0	NA	0	0	NA	0.728995003	0	0	0.271004997	1	0	0.728995003	unphased	0.690747721	0.947534232	0.728995003	0	1	0	0	2	1.08E-07	1	1	1	NA	NA	NA	NA
1351289	1206526381	PD9774b	10	111538436	A	T	-	-	-	-	-	-	30	0	0	49	11	22.44897959	0	0	NA	0	0	NA	0.728995003	0	0	0.271004997	1	0	0.728995003	unphased	1.162993612	1.162993612	1	0	0.99875	0.00125	0	2	1.19E-15	1	1	1	NA	NA	NA	NA
1351289	1206526516	PD9774b	10	113355938	A	T	-	-	-	-	-	-	44	0	0	59	9	15.25423729	0	0	NA	0	0	NA	0.728995003	0	0	0.271004997	1	0	0.728995003	unphased	0.790262223	1.084043401	0.728995003	0.00125	0.99875	0	0	2	1.96E-11	1	1	1	NA	NA	NA	NA
1351289	1206526880	PD9774b	10	118815754	A	T	-	-	-	-	-	-	35	0	0	38	4	10.52631579	0	0	NA	0	0	NA	0.728995003	0	0	0.271004997	1	0	0.728995003	unphased	0.545327148	0.748053341	0.728995003	0.005	0.99375	0.00125	0	2	4.03E-05	1	1	1	NA	NA	NA	NA
1351289	1206527208	PD9774b	10	123018495	C	T	-	-	-	-	-	-	38	0	0	44	7	15.90909091	0	0	NA	0	0	NA	0.728995003	0	0	0.271004997	1	0	0.728995003	unphased	0.824187622	1.130580618	0.728995003	0.00125	0.99375	0.005	0	2	2.55E-09	1	1	1	NA	NA	NA	NA
1351289	1206527280	PD9774b	10	123828891	G	T	TACC2	CCDS7626.1	r.?	-	-	intronic	38	0	0	36	8	22.22222222	0	0	NA	0	0	NA	0.728995003	0	0	0.271004997	1	0	0.728995003	unphased	1.151246201	1.151246201	1	0.0025	0.995	0.0025	0	2	1.04E-11	1	1	1	NA	NA	NA	NA
1351289	1206527391	PD9774b	10	125418070	A	T	-	-	-	-	-	-	41	0	0	45	9	20	0	0	NA	0	0	NA	0.728995003	0	0	0.271004997	1	0	0.728995003	unphased	1.036121581	1.036121581	1	0	1	0	0	2	1.47E-12	1	1	1	NA	NA	NA	NA
1351289	1206528494	PD9774b	10	134381406	A	T	INPP5A	CCDS7669.2	r.?	-	-	intronic	35	0	0	45	8	17.77777778	0	0	NA	0	0	NA	0.728995003	0	0	0.271004997	1	0	0.728995003	unphased	0.920996961	0.920996961	1	0	1	0	0	2	7.14E-11	1	1	1	NA	NA	NA	NA
1351289	1206528537	PD9774b	10	134750172	C	T	C10orf92	CCDS7672.2	r.?	-	-	intronic	21	0	0	27	6	22.22222222	168	2	1.19047619	11	5	45.45454545	0.728995003	0	0	0.271004997	1	0	0.728995003	unphased	1.151246201	1.151246201	1	0.0025	0.9975	0	0	2	4.23E-09	1	1.41E-09	0.205506126	NA	NA	NA	NA
1351289	1206529347	PD9774b	11	1353651	G	T	-	-	-	-	-	-	46	0	0	50	7	14	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.763225806	0.763225806	1	0.00375	0.99625	0	0	2	6.46E-09	1	1	1	NA	NA	NA	NA
1351289	1206529380	PD9774b	11	1700862	A	T	-	-	-	-	-	-	36	0	0	46	9	19.56521739	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.066619916	1.066619916	1	0	1	0	0	2	1.82E-12	1	1	1	NA	NA	NA	NA
1351289	1206529421	PD9774b	11	2193269	C	T	TH	CCDS7731.1	r.?	-	-	upstream	27	0	0	36	5	13.88888889	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.757168459	0.757168459	1	0.0025	0.9975	0	0	2	1.04E-06	1	1	1	NA	NA	NA	NA
1351289	1206529723	PD9774b	11	5170033	G	T	OR52A1	CCDS31374.1	r.?	-	-	downstream	40	0	0	33	5	15.15151515	0	0	NA	0	0	NA	0.502376961	0	0	0.497623039	1	0	0.502376961	unphased	0.750604525	0.750604525	1	0	1	0	0	2	6.60E-07	1	1	1	NA	NA	NA	NA
1351289	1206529996	PD9774b	11	8401854	C	T	-	-	-	-	-	-	38	0	0	47	6	12.76595745	0	0	NA	0	0	NA	1.258735013	1	0	0.741264987	2	0	0.258735013	unphased	0.728980585	0.728980585	1	0.0025	0.9975	0	0	2	1.41E-07	1	1	1	NA	NA	NA	NA
1351289	1206530039	PD9774b	11	9038332	A	T	SCUBE2	CCDS7797.1	r.?	-	-	downstream	40	0	0	46	7	15.2173913	0	0	NA	0	0	NA	1.258735013	1	0	0.741264987	2	0	0.258735013	unphased	0.868965987	0.868965987	1	0	1	0	0	2	3.53E-09	1	1	1	NA	NA	NA	NA
1351289	1206530133	PD9774b	11	9786688	G	T	AC026250.2	ENST00000498905	r.?	-	-	intronic	29	0	0	70	11	15.71428571	0	0	NA	0	0	NA	1.258735013	1	0	0.741264987	2	0	0.258735013	unphased	0.897340387	0.897340387	1	0.00125	0.99875	0	0	2	8.06E-14	1	1	1	NA	NA	NA	NA
1351289	1206530275	PD9774b	11	11568316	A	T	GALNTL4	CCDS7807.1	r.?	-	-	intronic	33	0	0	37	8	21.62162162	0	0	NA	0	0	NA	1.258735013	1	0	0.741264987	2	0	0.258735013	unphased	1.23466982	1.23466982	1	0.00125	0.9975	0.00125	0	2	1.33E-11	1	1	1	NA	NA	NA	NA
1351289	1206530321	PD9774b	11	12320595	G	T	MICALCL	CCDS41620.1	r.?	-	-	intronic	40	0	0	61	6	9.836065574	0	0	NA	0	0	NA	2	2	0	1	NA	NA	NA	unphased	0.634584876	0.634584876	1	0.00125	0.99875	0	0	2	6.85E-07	1	1	1	NA	NA	NA	NA
1351289	1206530827	PD9774b	11	19214267	A	T	CSRP3	CCDS7848.1	r.?	-	-	intronic	36	0	0	51	6	11.76470588	0	0	NA	0	0	NA	1.228568745	1	0	0.771431255	2	0	0.228568745	unphased	0.668256665	0.668256665	1	0.0025	0.9975	0	0	2	2.32E-07	1	1	1	NA	NA	NA	NA
1351289	1206531299	PD9774b	11	24441805	A	T	-	-	-	-	-	-	35	0	0	48	10	20.83333333	0	0	NA	0	0	NA	1.203721092	1	0	0.796278908	2	0	0.203721092	unphased	1.178194582	1.178194582	1	0	0.99875	0.00125	0	2	5.37E-14	1	1	1	NA	NA	NA	NA
1351289	1206531331	PD9774b	11	24808499	C	T	LUZP2	CCDS31446.1	r.?	-	-	intronic	33	0	0	42	8	19.04761905	0	0	NA	0	0	NA	1.203721092	1	0	0.796278908	2	0	0.203721092	unphased	1.077206475	1.077206475	1	0	0.99875	0.00125	0	2	3.96E-11	1	1	1	NA	NA	NA	NA
1351289	1206531488	PD9774b	11	26116695	A	T	-	-	-	-	-	-	41	0	0	53	4	7.547169811	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	0.562385879	0.562385879	1	0.01125	0.98875	0	0	2	0.000150502	1	1	1	NA	NA	NA	NA
1351289	1206531685	PD9774b	11	28530170	G	T	-	-	-	-	-	-	42	0	0	64	7	10.9375	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	0.815020161	0.815020161	1	0.00375	0.99625	0	0	2	3.78E-08	1	1	1	NA	NA	NA	NA
1351289	1206531764	PD9774b	11	29578096	A	T	-	-	-	-	-	-	28	0	0	45	13	28.88888889	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	2.152688172	1.076344086	2	0	0.99875	0.00125	0	2	7.68E-20	1	1	1	NA	NA	NA	NA
1351289	1206531875	PD9774b	11	31779997	G	T	ELP4	CCDS7875.2	r.?	-	-	intronic	34	0	0	54	5	9.259259259	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	0.689964158	0.689964158	1	0.005	0.995	0	0	2	8.06E-06	1	1	1	NA	NA	NA	NA
1351289	1206531882	PD9774b	11	31824553	C	T	PAX6	CCDS31452.1	r.?	-	-	intronic	28	0	0	43	8	18.60465116	2	0	0	0	0	NA	3	2	1	1	NA	NA	NA	unphased	1.386346587	1.386346587	1	0	0.99625	0.00375	0	2	4.85E-11	1	1	1	NA	NA	NA	NA
1351289	1206531889	PD9774b	11	31863991	C	T	AL049635.2	ENST00000506388	r.?	-	-	intronic	28	0	0	46	9	19.56521739	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	1.457924264	1.457924264	1	0	0.99625	0.00375	0	2	1.82E-12	1	1	1	NA	NA	NA	NA
1351289	1206531937	PD9774b	11	32516906	C	T	-	-	-	-	-	-	25	0	0	44	7	15.90909091	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	1.185483871	1.185483871	1	0.00125	0.99875	0	0	2	2.55E-09	1	1	1	NA	NA	NA	NA
1351289	1206532033	PD9774b	11	33272930	G	T	-	-	-	-	-	-	36	0	0	59	19	32.20338983	274	1	0.364963504	169	25	14.79289941	3	2	1	1	NA	NA	NA	unphased	2.399671952	1.199835976	2	0	0.9975	0.0025	0	2	2.20E-29	1	7.39E-29	0.74676477	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206532216	PD9774b	11	34757514	G	T	-	-	-	-	-	-	29	0	0	66	6	9.090909091	0	0	NA	0	0	NA	2	2	0	1	NA	NA	NA	unphased	0.586510264	0.586510264	1	0.0075	0.9925	0	0	2	1.10E-06	1	1	1	NA	NA	NA	NA
1351289	1206532293	PD9774b	11	35361872	C	T	SLC1A2	CCDS31459.1	r.?	-	-	intronic	28	0	0	62	21	33.87096774	0	0	NA	0	0	NA	2	2	0	1	NA	NA	NA	unphased	2.185223725	1.092611863	2	0	0.9975	0.0025	0	2	7.22E-33	1	1	1	NA	NA	NA	NA
1351289	1206532417	PD9774b	11	36939887	G	T	-	-	-	-	-	-	31	0	0	56	4	7.142857143	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	0.532258065	0.532258065	1	0.005	0.995	0	0	2	0.000186538	1	1	1	NA	NA	NA	NA
1351289	1206532639	PD9774b	11	39540086	G	T	-	-	-	-	-	-	25	0	0	71	6	8.450704225	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	0.629713766	0.629713766	1	0.0025	0.9975	0	0	2	1.69E-06	1	1	1	NA	NA	NA	NA
1351289	1206532683	PD9774b	11	39842803	C	T	-	-	-	-	-	-	28	0	0	46	9	19.56521739	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	1.457924264	1.457924264	1	0	0.99875	0.00125	0	2	1.82E-12	1	1	1	NA	NA	NA	NA
1351289	1206532698	PD9774b	11	39972051	G	T	-	-	-	-	-	-	33	0	0	57	6	10.52631579	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	0.784380306	0.784380306	1	0	0.99875	0.00125	0	2	4.56E-07	1	1	1	NA	NA	NA	NA
1351289	1206532815	PD9774b	11	41611020	G	T	-	-	-	-	-	-	27	0	0	73	13	17.80821918	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	1.326999558	1.326999558	1	0	0.9975	0.0025	0	2	7.97E-17	1	1	1	NA	NA	NA	NA
1351289	1206532833	PD9774b	11	41951228	G	T	-	-	-	-	-	-	38	0	0	59	9	15.25423729	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	1.136686714	1.136686714	1	0.00125	0.99875	0	0	2	1.96E-11	1	1	1	NA	NA	NA	NA
1351289	1206532841	PD9774b	11	42117590	G	T	-	-	-	-	-	-	42	0	0	49	4	8.163265306	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	0.608294931	0.608294931	1	0.0025	0.9975	0	0	2	0.000110643	1	1	1	NA	NA	NA	NA
1351289	1206532877	PD9774b	11	42681025	C	T	-	-	-	-	-	-	27	0	0	71	16	22.53521127	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	1.679236711	0.839618355	2	0.00125	0.99875	0	0	2	3.77E-22	1	1	1	NA	NA	NA	NA
1351289	1206532932	PD9774b	11	43283619	G	T	AC090588.1	ENST00000511537	r.1317c>a	-	-	non-coding variant	34	0	0	48	8	16.66666667	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	1.241935484	1.241935484	1	0	0.99625	0.00375	0	2	1.23E-10	1	1	1	NA	NA	NA	NA
1351289	1206533060	PD9774b	11	44705787	A	T	-	-	-	-	-	-	30	0	0	47	4	8.510638298	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	0.634179822	0.634179822	1	0.005	0.995	0	0	2	9.39E-05	1	1	1	NA	NA	NA	NA
1351289	1206533121	PD9774b	11	45466279	C	T	-	-	-	-	-	-	30	0	0	50	14	28	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	2.086451613	1.043225806	2	0	0.99875	0.00125	0	2	4.84E-21	1	1	1	NA	NA	NA	NA
1351289	1206533256	PD9774b	11	47187202	G	T	ARFGAP2	CCDS7926.1	r.?	-	-	intronic	19	0	0	38	5	13.15789474	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.58573854	0.58573854	1	0.0025	0.9975	0	0	2	1.37E-06	1	1	1	NA	NA	NA	NA
1351289	1206533276	PD9774b	11	47371441	C	T	SPI1	CCDS44591.1	r.?	-	-	downstream	31	0	0	41	4	9.756097561	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.434303698	0.434303698	1	0.0175	0.9825	0	0	2	5.46E-05	1	1	1	NA	NA	NA	NA
1351289	1206534167	PD9774b	11	50221360	C	T	-	-	-	-	-	-	30	0	0	39	6	15.38461538	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.684863524	0.684863524	1	0.00125	0.99875	0	0	2	4.43E-08	1	1	1	NA	NA	NA	NA
1351289	1206535155	PD9774b	11	55195150	A	T	-	-	-	-	-	-	48	0	0	63	6	9.523809524	0	0	NA	0	0	NA	1.485754291	1	0	0.514245709	1	1	0.485754291	unphased	0.565463542	1.164093766	0.485754291	0.0025	0.995	0.0025	0	2	8.32E-07	1	1	1	NA	NA	NA	NA
1351289	1206535163	PD9774b	11	55469953	G	T	-	-	-	-	-	-	37	0	0	44	8	18.18181818	0	0	NA	0	0	NA	1.485754291	1	0	0.514245709	1	1	0.485754291	unphased	1.079521308	1.079521308	1	0.00125	0.9975	0.00125	0	2	5.90E-11	1	1	1	NA	NA	NA	NA
1351289	1206535219	PD9774b	11	56029720	C	T	-	-	-	-	-	-	36	0	0	38	6	15.78947368	0	0	NA	0	0	NA	1.485754291	1	0	0.514245709	1	1	0.485754291	unphased	0.937479031	0.937479031	1	0	1	0	0	2	3.76E-08	1	1	1	NA	NA	NA	NA
1351289	1206535382	PD9774b	11	57604744	C	T	-	-	-	-	-	-	35	0	0	57	7	12.28070175	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.669496321	0.669496321	1	0.00375	0.99625	0	0	2	1.66E-08	1	1	1	NA	NA	NA	NA
1351289	1206535488	PD9774b	11	58887401	G	T	FAM111B	CCDS7972.1	r.?	-	-	intronic	39	0	0	54	5	9.259259259	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.504778973	0.504778973	1	0.01375	0.98625	0	0	2	8.06E-06	1	1	1	NA	NA	NA	NA
1351289	1206535537	PD9774b	11	59515581	C	T	-	-	-	-	-	-	28	0	0	46	9	19.56521739	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.066619916	1.066619916	1	0	1	0	0	2	1.82E-12	1	1	1	NA	NA	NA	NA
1351289	1206535541	PD9774b	11	59554136	C	T	STX3	CCDS7975.1	r.?	-	-	intronic	28	0	0	55	13	23.63636364	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.28856305	1.28856305	1	0	0.9975	0.0025	0	2	1.46E-18	1	1	1	NA	NA	NA	NA
1351289	1206535942	PD9774b	11	64272485	A	T	-	-	-	-	-	-	34	0	0	45	14	31.11111111	2	0	0	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.696057348	1.696057348	1	0	0.95375	0.04625	0	2	8.81E-22	1	1	1	NA	NA	NA	NA
1351289	1206535983	PD9774b	11	64725480	C	T	C11orf85	CCDS31603.1	r.?	-	-	intronic	36	0	0	43	13	30.23255814	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.648162041	1.648162041	1	0	0.9825	0.0175	0	2	3.88E-20	1	1	1	NA	NA	NA	NA
1351289	1206536382	PD9774b	11	68514323	C	T	MTL5	CCDS44661.1	r.?	-	-	intronic	39	0	0	44	10	22.72727273	217	0	0	69	14	20.28985507	1.26776812	1	0	0.73223188	2	0	0.26776812	unphased	1.299859324	1.299859324	1	0	0.9975	0.0025	0	2	2.08E-14	1	7.30E-19	1	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206536438	PD9774b	11	68851578	G	T	TPCN2	CCDS8189.1	r.?	-	-	intronic	32	0	0	49	8	16.32653061	0	0	NA	0	0	NA	1.26776812	1	0	0.73223188	2	0	0.26776812	unphased	0.933776494	0.933776494	1	0.00125	0.99875	0	0	2	1.47E-10	1	1	1	NA	NA	NA	NA
1351289	1206536536	PD9774b	11	69599209	G	T	-	-	-	-	-	-	34	0	0	67	19	28.35820896	0	0	NA	0	0	NA	1.26776812	1	0	0.73223188	2	0	0.26776812	unphased	1.621914022	1.279345959	1.26776812	0	0.995	0.005	0	2	3.67E-28	1	1	1	NA	NA	NA	NA
1351289	1206537052	PD9774b	11	75052304	C	T	ARRB1	CCDS44684.1	r.?	-	-	intronic	31	0	0	38	5	13.15789474	0	0	NA	0	0	NA	1.26776812	1	0	0.73223188	2	0	0.26776812	unphased	0.752550135	0.752550135	1	0.00125	0.9975	0.00125	0	2	1.37E-06	1	1	1	NA	NA	NA	NA
1351289	1206537161	PD9774b	11	76569057	C	T	ACER3	CCDS8247.1	r.?	-	-	upstream	35	0	0	61	14	22.95081967	0	0	NA	0	0	NA	1.26776812	1	0	0.73223188	2	0	0.26776812	unphased	1.312644825	1.312644825	1	0	0.99375	0.00625	0	2	1.10E-19	1	1	1	NA	NA	NA	NA
1351289	1206537793	PD9774b	11	85456140	G	T	SYTL2	CCDS31649.1	r.?	-	-	intronic	36	0	0	47	10	21.27659574	0	0	NA	0	0	NA	1.26776812	1	0	0.73223188	2	0	0.26776812	unphased	1.21688958	1.21688958	1	0.00125	0.99875	0	0	2	4.27E-14	1	1	1	NA	NA	NA	NA
1351289	1206538190	PD9774b	11	90445960	A	T	-	-	-	-	-	-	40	0	0	55	8	14.54545455	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.792961877	0.792961877	1	0.00125	0.99875	0	0	2	3.86E-10	1	1	1	NA	NA	NA	NA
1351289	1206538197	PD9774b	11	90565604	C	T	-	-	-	-	-	-	35	0	0	42	8	19.04761905	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.038402458	1.038402458	1	0	1	0	0	2	3.96E-11	1	1	1	NA	NA	NA	NA
1351289	1206538324	PD9774b	11	91933419	A	T	-	-	-	-	-	-	34	0	0	46	10	21.73913043	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.18513324	1.18513324	1	0	0.9975	0.0025	0	2	3.38E-14	1	1	1	NA	NA	NA	NA
1351289	1206538644	PD9774b	11	96067162	C	T	MAML2	CCDS44714.1	r.?	-	-	intronic	26	0	0	63	15	23.80952381	0	0	NA	0	0	NA	1.238591577	1	0	0.761408423	2	0	0.238591577	unphased	1.35481059	1.35481059	1	0.00125	0.99375	0.005	0	2	2.97E-21	1	1	1	NA	NA	NA	NA
1351289	1206538764	PD9774b	11	97525001	C	T	-	-	-	-	-	-	34	0	0	67	15	22.3880597	0	0	NA	0	0	NA	1.238591577	1	0	0.761408423	2	0	0.238591577	unphased	1.273926376	1.273926376	1	0	0.9975	0.0025	0	2	8.27E-21	1	1	1	NA	NA	NA	NA
1351289	1206538768	PD9774b	11	97678516	C	T	-	-	-	-	-	-	33	0	0	59	10	16.94915254	0	0	NA	0	0	NA	1.238591577	1	0	0.761408423	2	0	0.238591577	unphased	0.964441437	0.964441437	1	0	1	0	0	2	4.91E-13	1	1	1	NA	NA	NA	NA
1351289	1206539043	PD9774b	11	100532122	C	T	-	-	-	-	-	-	26	0	0	38	12	31.57894737	0	0	NA	0	0	NA	1.238591577	1	0	0.761408423	2	0	0.238591577	unphased	1.796906678	1.450766106	1.238591577	0	0.995	0.005	0	2	5.86E-19	1	1	1	NA	NA	NA	NA
1351289	1206539130	PD9774b	11	101482396	C	T	-	-	-	-	-	-	39	0	0	40	7	17.5	0	0	NA	0	0	NA	1.238591577	1	0	0.761408423	2	0	0.238591577	unphased	0.995785784	0.995785784	1	0.00125	0.99875	0	0	2	1.26E-09	1	1	1	NA	NA	NA	NA
1351289	1206539429	PD9774b	11	105220981	C	T	-	-	-	-	-	-	40	0	0	53	16	30.18867925	0	0	NA	0	0	NA	1.238591577	1	0	0.761408423	2	0	0.238591577	unphased	1.717797579	1.3868959	1.238591577	0.00125	0.99625	0.0025	0	2	1.90E-24	1	1	1	NA	NA	NA	NA
1351289	1206539717	PD9774b	11	108911776	C	T	-	-	-	-	-	-	30	0	0	39	11	28.20512821	0	0	NA	0	0	NA	1.238591577	1	0	0.761408423	2	0	0.238591577	unphased	1.604929469	1.604929469	1	0	0.985	0.015	0	2	7.20E-17	1	1	1	NA	NA	NA	NA
1351289	1206539725	PD9774b	11	109005581	A	T	-	-	-	-	-	-	37	0	0	54	11	20.37037037	0	0	NA	0	0	NA	1.238591577	1	0	0.761408423	2	0	0.238591577	unphased	1.159115727	1.159115727	1	0	0.99875	0.00125	0	2	3.84E-15	1	1	1	NA	NA	NA	NA
1351289	1206540172	PD9774b	11	114694464	G	T	-	-	-	-	-	-	32	0	0	44	6	13.63636364	0	0	NA	0	0	NA	1.238591577	1	0	0.761408423	2	0	0.238591577	unphased	0.775936975	0.775936975	1	0	1	0	0	2	9.37E-08	1	1	1	NA	NA	NA	NA
1351289	1206540248	PD9774b	11	115569172	G	T	-	-	-	-	-	-	27	0	0	52	14	26.92307692	216	0	0	88	13	14.77272727	1.238591577	1	0	0.761408423	2	0	0.238591577	unphased	1.531978129	1.531978129	1	0	0.9825	0.0175	0	2	9.04E-21	1	1.03E-15	1	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206540252	PD9774b	11	115664078	A	T	-	-	-	-	-	-	34	0	0	48	9	18.75	0	0	NA	0	0	NA	1.238591577	1	0	0.761408423	2	0	0.238591577	unphased	1.06691334	1.06691334	1	0.00125	0.9975	0.00125	0	2	2.75E-12	1	1	1	NA	NA	NA	NA
1351289	1206540499	PD9774b	11	118431346	A	T	C11orf60	CCDS8399.1	r.?	-	-	intronic	32	0	0	22	5	22.72727273	0	0	NA	0	0	NA	1.238591577	1	0	0.761408423	2	0	0.238591577	unphased	1.293228291	1.293228291	1	0.00125	0.995	0.00375	0	2	7.67E-08	1	1	1	NA	NA	NA	NA
1351289	1206540689	PD9774b	11	120037767	C	T	ENSG00000176984	ENST00000319763	r.?	-	-	upstream	31	0	0	52	10	19.23076923	0	0	NA	0	0	NA	1.238591577	1	0	0.761408423	2	0	0.238591577	unphased	1.094270092	1.094270092	1	0	0.9975	0.0025	0	2	1.28E-13	1	1	1	NA	NA	NA	NA
1351289	1206540692	PD9774b	11	120060146	C	T	-	-	-	-	-	-	25	0	0	53	15	28.30188679	0	0	NA	0	0	NA	1.238591577	1	0	0.761408423	2	0	0.238591577	unphased	1.61043523	1.300214906	1.238591577	0	0.99875	0.00125	0	2	1.60E-22	1	1	1	NA	NA	NA	NA
1351289	1206540806	PD9774b	11	121065824	G	T	TECTA	CCDS8434.1	r.?	-	-	downstream	39	0	0	54	11	20.37037037	0	0	NA	0	0	NA	1.238591577	1	0	0.761408423	2	0	0.238591577	unphased	1.159115727	1.159115727	1	0	0.99875	0.00125	0	2	3.84E-15	1	1	1	NA	NA	NA	NA
1351289	1206541033	PD9774b	11	123144728	A	T	ENSG00000224741	ENST00000435687	r.?	-	-	intronic	33	0	0	59	5	8.474576271	0	0	NA	0	0	NA	1.238591577	1	0	0.761408423	2	0	0.238591577	unphased	0.482220719	0.482220719	1	0.0075	0.9925	0	0	2	1.25E-05	1	1	1	NA	NA	NA	NA
1351289	1206541460	PD9774b	11	129021882	C	T	ARHGAP32	CCDS44769.1	r.?	-	-	intronic	43	0	0	66	20	30.3030303	0	0	NA	0	0	NA	1.238591577	1	0	0.761408423	2	0	0.238591577	unphased	1.724304388	1.392149293	1.238591577	0	0.98875	0.01125	0	2	3.11E-30	1	1	1	NA	NA	NA	NA
1351289	1206541718	PD9774b	11	132558717	C	T	ENSG00000183715	CCDS8492.1	r.?	-	-	intronic	24	0	0	26	6	23.07692308	0	0	NA	0	0	NA	1.238591577	1	0	0.761408423	2	0	0.238591577	unphased	1.313124111	1.313124111	1	0.00125	0.99125	0.0075	0	2	3.30E-09	1	1	1	NA	NA	NA	NA
1351289	1206541893	PD9774b	11	134696636	A	T	-	-	-	-	-	-	36	0	0	49	8	16.32653061	0	0	NA	0	0	NA	1.238591577	1	0	0.761408423	2	0	0.238591577	unphased	0.929012976	0.929012976	1	0.00125	0.99875	0	0	2	1.47E-10	1	1	1	NA	NA	NA	NA
1351289	1206542167	PD9774b	12	1546776	A	T	ERC1	CCDS8508.1	r.?	-	-	intronic	40	0	0	62	8	12.90322581	0	0	NA	0	0	NA	2	2	0	1	NA	NA	NA	unphased	0.832466181	0.832466181	1	0	1	0	0	2	1.04E-09	1	1	1	NA	NA	NA	NA
1351289	1206542268	PD9774b	12	2524943	C	T	CACNA1C	CCDS44794.1	r.?	-	-	intronic	30	0	0	62	6	9.677419355	0	0	NA	0	0	NA	2	2	0	1	NA	NA	NA	unphased	0.624349636	0.624349636	1	0.0025	0.9975	0	0	2	7.56E-07	1	1	1	NA	NA	NA	NA
1351289	1206542432	PD9774b	12	4230885	C	T	-	-	-	-	-	-	44	0	0	53	16	30.18867925	0	0	NA	0	0	NA	2	2	0	1	NA	NA	NA	unphased	1.947656726	0.973828363	2	0	1	0	0	2	1.90E-24	1	1	1	NA	NA	NA	NA
1351289	1206542563	PD9774b	12	5786363	G	T	ANO2	CCDS44807.1	r.?	-	-	intronic	25	0	0	51	5	9.803921569	0	0	NA	0	0	NA	2	2	0	1	NA	NA	NA	unphased	0.632511069	0.632511069	1	0.00875	0.99125	0	0	2	6.06E-06	1	1	1	NA	NA	NA	NA
1351289	1206542708	PD9774b	12	6804340	G	T	C12orf53	CCDS44818.1	r.?	-	-	intronic	24	0	0	49	5	10.20408163	0	0	NA	1	0	0	2	2	0	1	NA	NA	NA	unphased	0.658327847	0.658327847	1	0.005	0.995	0	0	2	4.96E-06	1	1	1	NA	NA	NA	NA
1351289	1206542790	PD9774b	12	7565587	G	T	CD163L1	CCDS8577.1	r.?	-	-	intronic	36	0	0	55	11	20	0	0	NA	0	0	NA	2	2	0	1	NA	NA	NA	unphased	1.290322581	1.290322581	1	0	0.99625	0.00375	0	2	4.77E-15	1	1	1	NA	NA	NA	NA
1351289	1206542797	PD9774b	12	7683088	C	T	-	-	-	-	-	-	34	0	0	56	20	35.71428571	0	0	NA	0	0	NA	2	2	0	1	NA	NA	NA	unphased	2.304147465	1.152073733	2	0	0.99875	0.00125	0	2	6.31E-32	1	1	1	NA	NA	NA	NA
1351289	1206543589	PD9774b	12	14438354	C	T	-	-	-	-	-	-	32	0	0	49	11	22.44897959	0	0	NA	0	0	NA	1.283669778	1	0	0.716330222	2	0	0.283669778	unphased	1.287512439	1.287512439	1	0	0.9975	0.0025	0	2	1.19E-15	1	1	1	NA	NA	NA	NA
1351289	1206543653	PD9774b	12	14929008	G	T	HIST4H4	CCDS8665.1	r.?	-	-	upstream	41	0	0	60	15	25	0	0	NA	0	0	NA	1.283669778	1	0	0.716330222	2	0	0.283669778	unphased	1.43382067	1.43382067	1	0	0.99375	0.00625	0	2	1.31E-21	1	1	1	NA	NA	NA	NA
1351289	1206543660	PD9774b	12	14988602	C	T	ART4	CCDS8668.1	r.?	-	-	intronic	17	0	0	56	11	19.64285714	0	0	NA	0	0	NA	1.283669778	1	0	0.716330222	2	0	0.283669778	unphased	1.126573384	1.126573384	1	0.00125	0.9975	0.00125	0	2	5.91E-15	1	1	1	NA	NA	NA	NA
1351289	1206544134	PD9774b	12	20774267	A	T	PDE3A	CCDS31754.1	r.1484a>u	c.1462A>T	p.T488S	missense	30	0	0	51	11	21.56862745	230	0	0	153	26	16.99346405	1.283669778	1	0	0.716330222	2	0	0.283669778	unphased	1.237021755	1.237021755	1	0.00125	0.9975	0.00125	0	2	1.94E-15	1	1.33E-31	1	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206544269	PD9774b	12	22560425	C	T	-	-	-	-	-	-	34	0	0	64	15	23.4375	0	0	NA	0	0	NA	1.283669778	1	0	0.716330222	2	0	0.283669778	unphased	1.344206878	1.344206878	1	0	0.99375	0.00625	0	2	3.87E-21	1	1	1	NA	NA	NA	NA
1351289	1206544366	PD9774b	12	23952022	G	T	SOX5	CCDS8699.1	r.?	-	-	intronic	30	0	0	45	8	17.77777778	0	0	NA	0	0	NA	1.283669778	1	0	0.716330222	2	0	0.283669778	unphased	1.01960581	1.01960581	1	0	1	0	0	2	7.14E-11	1	1	1	NA	NA	NA	NA
1351289	1206544532	PD9774b	12	25833964	A	T	-	-	-	-	-	-	32	0	0	66	17	25.75757576	0	0	NA	0	0	NA	1.283669778	1	0	0.716330222	2	0	0.283669778	unphased	1.477269782	1.477269782	1	0	0.98875	0.01125	0	2	1.52E-24	1	1	1	NA	NA	NA	NA
1351289	1206544854	PD9774b	12	29221798	A	T	-	-	-	-	-	-	34	0	0	58	15	25.86206897	0	0	NA	0	0	NA	1.283669778	1	0	0.716330222	2	0	0.283669778	unphased	1.483262762	1.483262762	1	0	0.98625	0.01375	0	2	7.42E-22	1	1	1	NA	NA	NA	NA
1351289	1206547087	PD9774b	12	43754295	C	T	ADAMTS20	ENST00000389420	r.?	-	-	intronic	33	0	0	42	9	21.42857143	0	0	NA	0	0	NA	0.857682244	0	0	0.142317756	1	0	0.857682244	unphased	1.137706103	1.137706103	1	0.00125	0.99875	0	0	2	7.51E-13	1	1	1	NA	NA	NA	NA
1351289	1206547720	PD9774b	12	51603661	G	T	POU6F1	CCDS31803.1	r.?	-	-	intronic	41	0	0	48	6	12.5	0	0	NA	0	0	NA	0.857682244	0	0	0.142317756	1	0	0.857682244	unphased	0.663661893	0.773785278	0.857682244	0.0025	0.9975	0	0	2	1.60E-07	1	1	1	NA	NA	NA	NA
1351289	1206547807	PD9774b	12	52823317	G	T	KRT75	CCDS8827.1	r.?	-	-	intronic	30	0	0	37	6	16.21621622	0	0	NA	0	0	NA	0.857682244	0	0	0.142317756	1	0	0.857682244	unphased	0.860966781	1.003829549	0.857682244	0.00125	0.99875	0	0	2	3.18E-08	1	1	1	NA	NA	NA	NA
1351289	1206548139	PD9774b	12	55506511	A	T	-	-	-	-	-	-	36	0	0	45	5	11.11111111	0	0	NA	0	0	NA	0.857682244	0	0	0.142317756	1	0	0.857682244	unphased	0.589921683	0.687809136	0.857682244	0	1	0	0	2	3.23E-06	1	1	1	NA	NA	NA	NA
1351289	1206548277	PD9774b	12	57337485	C	T	-	-	-	-	-	-	33	0	0	46	8	17.39130435	0	0	NA	0	0	NA	0.857682244	0	0	0.142317756	1	0	0.857682244	unphased	0.923355678	1.076570821	0.857682244	0	0.99875	0.00125	0	2	8.61E-11	1	1	1	NA	NA	NA	NA
1351289	1206548279	PD9774b	12	57388149	G	T	ZBTB39	CCDS31839.1	r.?	-	-	downstream	29	0	0	39	8	20.51282051	1	0	0	0	0	NA	0.857682244	0	0	0.142317756	1	0	0.857682244	unphased	1.089086184	1.089086184	1	0	0.99875	0.00125	0	2	2.09E-11	1	1	1	NA	NA	NA	NA
1351289	1206548585	PD9774b	12	61650496	C	T	-	-	-	-	-	-	39	0	0	58	9	15.51724138	0	0	NA	0	0	NA	0.857682244	0	0	0.142317756	1	0	0.857682244	unphased	0.823856144	0.960561034	0.857682244	0.00125	0.99875	0	0	2	1.67E-11	1	1	1	NA	NA	NA	NA
1351289	1206548816	PD9774b	12	64341347	A	T	SRGAP1	CCDS8967.1	r.?	-	-	intronic	25	0	0	38	4	10.52631579	0	0	NA	0	0	NA	0.857682244	0	0	0.142317756	1	0	0.857682244	unphased	0.558873173	0.651608655	0.857682244	0.0025	0.9975	0	0	2	4.03E-05	1	1	1	NA	NA	NA	NA
1351289	1206549411	PD9774b	12	71957587	C	T	LGR5	CCDS9000.1	r.?	-	-	intronic	33	0	0	48	6	12.5	0	0	NA	0	0	NA	0.853446383	0	0	0.146553617	1	0	0.853446383	unphased	0.663132411	0.777005356	0.853446383	0.005	0.995	0	0	2	1.60E-07	1	1	1	NA	NA	NA	NA
1351289	1206549469	PD9774b	12	73001615	C	T	TRHDE	CCDS9004.1	r.?	-	-	intronic	26	0	0	48	5	10.41666667	0	0	NA	0	0	NA	0.853446383	0	0	0.146553617	1	0	0.853446383	unphased	0.552610342	0.647504464	0.853446383	0.00375	0.99625	0	0	2	4.47E-06	1	1	1	NA	NA	NA	NA
1351289	1206549536	PD9774b	12	73940757	A	T	-	-	-	-	-	-	43	0	0	55	10	18.18181818	0	0	NA	0	0	NA	0.853446383	0	0	0.146553617	1	0	0.853446383	unphased	0.964556234	0.964556234	1	0	1	0	0	2	2.33E-13	1	1	1	NA	NA	NA	NA
1351289	1206549575	PD9774b	12	74532579	C	T	-	-	-	-	-	-	40	0	0	46	5	10.86956522	0	0	NA	0	0	NA	0.853446383	0	0	0.146553617	1	0	0.853446383	unphased	0.576636879	0.675656832	0.853446383	0.00375	0.99625	0	0	2	3.61E-06	1	1	1	NA	NA	NA	NA
1351289	1206549674	PD9774b	12	75859287	G	T	-	-	-	-	-	-	31	0	0	48	9	18.75	0	0	NA	0	0	NA	0.853446383	0	0	0.146553617	1	0	0.853446383	unphased	0.994698616	0.994698616	1	0	1	0	0	2	2.75E-12	1	1	1	NA	NA	NA	NA
1351289	1206549705	PD9774b	12	76232417	G	T	-	-	-	-	-	-	31	0	0	48	6	12.5	0	0	NA	0	0	NA	0.853446383	0	0	0.146553617	1	0	0.853446383	unphased	0.663132411	0.777005356	0.853446383	0.00375	0.99625	0	0	2	1.60E-07	1	1	1	NA	NA	NA	NA
1351289	1206549745	PD9774b	12	76929796	C	T	OSBPL8	CCDS31862.1	r.?	-	-	intronic	42	0	0	39	5	12.82051282	0	0	NA	0	0	NA	0.853446383	0	0	0.146553617	1	0	0.853446383	unphased	0.680135806	0.796928571	0.853446383	0.00625	0.99375	0	0	2	1.56E-06	1	1	1	NA	NA	NA	NA
1351289	1206549843	PD9774b	12	78585108	G	T	NAV3	CCDS41815.1	r.?	-	-	intronic	39	0	0	48	5	10.41666667	0	0	NA	0	0	NA	0.853446383	0	0	0.146553617	1	0	0.853446383	unphased	0.552610342	0.647504464	0.853446383	0.00375	0.995	0.00125	0	2	4.47E-06	1	1	1	NA	NA	NA	NA
1351289	1206549963	PD9774b	12	80691344	C	T	-	-	-	-	-	-	32	0	0	45	6	13.33333333	0	0	NA	0	0	NA	0.853446383	0	0	0.146553617	1	0	0.853446383	unphased	0.707341238	0.828805714	0.853446383	0.0025	0.9975	0	0	2	1.08E-07	1	1	1	NA	NA	NA	NA
1351289	1206549974	PD9774b	12	80837242	A	T	PTPRQ	ENST00000418574	r.?	-	-	upstream	42	0	0	47	7	14.89361702	0	0	NA	0	0	NA	0.853446383	0	0	0.146553617	1	0	0.853446383	unphased	0.790115213	0.925793616	0.853446383	0.00125	0.9975	0.00125	0	2	4.12E-09	1	1	1	NA	NA	NA	NA
1351289	1206550179	PD9774b	12	83724818	A	T	-	-	-	-	-	-	37	0	0	44	10	22.72727273	0	0	NA	0	0	NA	0.853446383	0	0	0.146553617	1	0	0.853446383	unphased	1.205695292	1.205695292	1	0	0.99625	0.00375	0	2	2.08E-14	1	1	1	NA	NA	NA	NA
1351289	1206550470	PD9774b	12	87607007	A	T	-	-	-	-	-	-	27	0	0	58	5	8.620689655	0	0	NA	0	0	NA	0.853446383	0	0	0.146553617	1	0	0.853446383	unphased	0.457332697	0.535865763	0.853446383	0.005	0.995	0	0	2	1.15E-05	1	1	1	NA	NA	NA	NA
1351289	1206550540	PD9774b	12	88707953	C	T	-	-	-	-	-	-	35	0	0	50	17	34	0	0	NA	0	0	NA	0.853446383	0	0	0.146553617	1	0	0.853446383	unphased	1.803720157	1.803720157	1	0	0.9	0.1	0	2	6.43E-27	1	1	1	NA	NA	NA	NA
1351289	1206550545	PD9774b	12	88817687	C	T	-	-	-	-	-	-	42	0	0	54	6	11.11111111	0	0	NA	0	0	NA	0.853446383	0	0	0.146553617	1	0	0.853446383	unphased	0.589451032	0.690671428	0.853446383	0.00125	0.99875	0	0	2	3.29E-07	1	1	1	NA	NA	NA	NA
1351289	1206550693	PD9774b	12	90868505	A	T	-	-	-	-	-	-	33	0	0	36	3	8.333333333	0	0	NA	0	0	NA	0.853446383	0	0	0.146553617	1	0	0.853446383	unphased	0.442088274	0.518003571	0.853446383	0.0075	0.9925	0	0	2	0.000788827	1	1	1	NA	NA	NA	NA
1351289	1206551022	PD9774b	12	95524393	G	T	FGD6	CCDS31878.1	r.?	-	-	intronic	43	0	0	43	8	18.60465116	0	0	NA	0	0	NA	0.853446383	0	0	0.146553617	1	0	0.853446383	unphased	0.986987774	0.986987774	1	0	1	0	0	2	4.85E-11	1	1	1	NA	NA	NA	NA
1351289	1206551585	PD9774b	12	102885154	C	T	-	-	-	-	-	-	39	0	0	45	11	24.44444444	0	0	NA	0	0	NA	0.853446383	0	0	0.146553617	1	0	0.853446383	unphased	1.29679227	1.29679227	1	0	0.99625	0.00375	0	2	4.24E-16	1	1	1	NA	NA	NA	NA
1351289	1206551653	PD9774b	12	103867844	C	T	C12orf42	CCDS44963.1	r.?	-	-	intronic	37	0	0	49	5	10.20408163	0	0	NA	0	0	NA	0.853446383	0	0	0.146553617	1	0	0.853446383	unphased	0.54133258	0.634290087	0.853446383	0	1	0	0	2	4.96E-06	1	1	1	NA	NA	NA	NA
1351289	1206551827	PD9774b	12	106241395	A	T	-	-	-	-	-	-	42	0	0	54	4	7.407407407	0	0	NA	0	0	NA	0.853446383	0	0	0.146553617	1	0	0.853446383	unphased	0.392967355	0.460447619	0.853446383	0.0075	0.9925	0	0	2	0.000161898	1	1	1	NA	NA	NA	NA
1351289	1206551832	PD9774b	12	106368069	G	T	-	-	-	-	-	-	33	0	0	48	9	18.75	0	0	NA	0	0	NA	0.853446383	0	0	0.146553617	1	0	0.853446383	unphased	0.994698616	0.994698616	1	0.00125	0.9975	0.00125	0	2	2.75E-12	1	1	1	NA	NA	NA	NA
1351289	1206551897	PD9774b	12	107504585	A	T	-	-	-	-	-	-	36	0	0	40	3	7.5	0	0	NA	0	0	NA	0.853446383	0	0	0.146553617	1	0	0.853446383	unphased	0.397879446	0.466203214	0.853446383	0.0075	0.9925	0	0	2	0.001075403	1	1	1	NA	NA	NA	NA
1351289	1206551922	PD9774b	12	107989414	G	T	BTBD11	CCDS31893.1	r.?	-	-	intronic	34	0	0	52	6	11.53846154	0	0	NA	0	0	NA	0.853446383	0	0	0.146553617	1	0	0.853446383	unphased	0.612122225	0.717235714	0.853446383	0.00125	0.9975	0.00125	0	2	2.61E-07	1	1	1	NA	NA	NA	NA
1351289	1206552086	PD9774b	12	109874196	G	T	-	-	-	-	-	-	31	0	0	41	6	14.63414634	0	0	NA	0	0	NA	0.853446383	0	0	0.146553617	1	0	0.853446383	unphased	0.776350139	0.909664808	0.853446383	0.0025	0.9975	0	0	2	6.05E-08	1	1	1	NA	NA	NA	NA
1351289	1206552434	PD9774b	12	114402194	C	T	RBM19	CCDS9172.1	r.?	-	-	intronic	16	0	0	46	7	15.2173913	0	0	NA	0	0	NA	0.853446383	0	0	0.146553617	1	0	0.853446383	unphased	0.80729163	0.945919564	0.853446383	0	0.99875	0.00125	0	2	3.53E-09	1	1	1	NA	NA	NA	NA
1351289	1206552448	PD9774b	12	114581778	G	T	-	-	-	-	-	-	32	0	0	53	12	22.64150943	0	0	NA	0	0	NA	0.853446383	0	0	0.146553617	1	0	0.853446383	unphased	1.201145499	1.201145499	1	0	0.9975	0.0025	0	2	5.39E-17	1	1	1	NA	NA	NA	NA
1351289	1206552548	PD9774b	12	115808280	C	T	-	-	-	-	-	-	34	0	0	38	6	15.78947368	0	0	NA	0	0	NA	0.853446383	0	0	0.146553617	1	0	0.853446383	unphased	0.83764094	0.98148045	0.853446383	0	0.99875	0.00125	0	2	3.76E-08	1	1	1	NA	NA	NA	NA
1351289	1206552795	PD9774b	12	119190121	C	T	-	-	-	-	-	-	29	0	0	45	4	8.888888889	0	0	NA	0	0	NA	0.853446383	0	0	0.146553617	1	0	0.853446383	unphased	0.471560825	0.552537142	0.853446383	0.00625	0.99375	0	0	2	7.91E-05	1	1	1	NA	NA	NA	NA
1351289	1206552807	PD9774b	12	119287407	C	T	-	-	-	-	-	-	39	0	0	51	13	25.49019608	0	0	NA	0	0	NA	0.853446383	0	0	0.146553617	1	0	0.853446383	unphased	1.352270014	1.352270014	1	0	0.9975	0.0025	0	2	4.87E-19	1	1	1	NA	NA	NA	NA
1351289	1206553735	PD9774b	12	128903452	A	T	TMEM132C	CCDS45009.1	r.?	-	-	intronic	39	0	0	38	7	18.42105263	0	0	NA	0	0	NA	0.853446383	0	0	0.146553617	1	0	0.853446383	unphased	0.977247763	0.977247763	1	0.00125	0.99875	0	0	2	8.61E-10	1	1	1	NA	NA	NA	NA
1351289	1206553809	PD9774b	12	129572709	C	T	TMEM132D	CCDS9266.1	r.?	-	-	intronic	20	0	0	41	4	9.756097561	0	0	NA	0	0	NA	0.853446383	0	0	0.146553617	1	0	0.853446383	unphased	0.51756676	0.606443205	0.853446383	0.005	0.995	0	0	2	5.46E-05	1	1	1	NA	NA	NA	NA
1351289	1206553880	PD9774b	12	130222952	G	T	TMEM132D	CCDS9266.1	r.?	-	-	intronic	36	0	0	51	8	15.68627451	1	0	0	0	0	NA	0.853446383	0	0	0.146553617	1	0	0.853446383	unphased	0.832166162	0.975065545	0.853446383	0	0.9975	0.0025	0	2	2.05E-10	1	1	1	NA	NA	NA	NA
1351289	1206553883	PD9774b	12	130263036	C	T	TMEM132D	CCDS9266.1	r.?	-	-	intronic	22	0	0	37	5	13.51351351	0	0	NA	0	0	NA	0.853446383	0	0	0.146553617	1	0	0.853446383	unphased	0.716899903	0.840005791	0.853446383	0	1	0	0	2	1.19E-06	1	1	1	NA	NA	NA	NA
1351289	1206553978	PD9774b	12	131145312	G	T	-	-	-	-	-	-	40	0	0	36	5	13.88888889	0	0	NA	0	0	NA	0.853446383	0	0	0.146553617	1	0	0.853446383	unphased	0.73681379	0.863339285	0.853446383	0.00375	0.99625	0	0	2	1.04E-06	1	1	1	NA	NA	NA	NA
1351289	1206554045	PD9774b	12	131566358	G	T	GPR133	CCDS9272.1	r.?	-	-	intronic	26	0	0	38	6	15.78947368	0	0	NA	0	0	NA	0.853446383	0	0	0.146553617	1	0	0.853446383	unphased	0.83764094	0.98148045	0.853446383	0.0025	0.9975	0	0	2	3.76E-08	1	1	1	NA	NA	NA	NA
1351289	1206554300	PD9774b	12	133246531	C	T	POLE	CCDS9278.1	r.?	-	-	intronic	28	0	0	42	9	21.42857143	0	0	NA	0	0	NA	0.853446383	0	0	0.146553617	1	0	0.853446383	unphased	1.136798418	1.136798418	1	0	1	0	0	2	7.51E-13	1	1	1	NA	NA	NA	NA
1351289	1206555241	PD9774b	13	24075856	A	T	-	-	-	-	-	-	34	0	0	50	5	10	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.44516129	0.44516129	1	0.0175	0.9825	0	0	2	5.49E-06	1	1	1	NA	NA	NA	NA
1351289	1206555292	PD9774b	13	24734354	G	T	SPATA13	CCDS9305.1	r.?	-	-	upstream	28	0	0	44	9	20.45454545	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.910557185	0.910557185	1	0	1	0	0	2	1.18E-12	1	1	1	NA	NA	NA	NA
1351289	1206555481	PD9774b	13	26300388	G	T	ATP8A2	CCDS41873.1	r.?	-	-	intronic	33	0	0	48	4	8.333333333	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.370967742	0.370967742	1	0.03	0.97	0	0	2	0.000102016	1	1	1	NA	NA	NA	NA
1351289	1206555689	PD9774b	13	28605490	G	T	FLT3	CCDS31953.1	r.?	-	-	intronic	24	0	0	44	4	9.090909091	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.404692082	0.404692082	1	0.01875	0.98125	0	0	2	7.23E-05	1	1	1	NA	NA	NA	NA
1351289	1206555865	PD9774b	13	30789061	G	T	KATNAL1	CCDS31956.1	r.?	-	-	intronic	27	0	0	37	4	10.81081081	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.481255449	0.481255449	1	0.0125	0.9875	0	0	2	3.62E-05	1	1	1	NA	NA	NA	NA
1351289	1206556236	PD9774b	13	35939091	C	T	NBEA	CCDS45026.1	r.?	-	-	intronic	35	0	0	50	7	14	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.623225806	0.623225806	1	0.00125	0.99875	0	0	2	6.46E-09	1	1	1	NA	NA	NA	NA
1351289	1206556414	PD9774b	13	38396096	A	T	TRPC4	CCDS45037.1	r.?	-	-	intronic	37	0	0	48	7	14.58333333	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.649193548	0.649193548	1	0.00625	0.99375	0	0	2	4.81E-09	1	1	1	NA	NA	NA	NA
1351289	1206556418	PD9774b	13	38414169	G	T	TRPC4	CCDS45037.1	r.?	-	-	intronic	38	0	0	60	4	6.666666667	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.296774194	0.296774194	1	0.08875	0.91125	0	0	2	0.000243755	1	1	1	NA	NA	NA	NA
1351289	1206556601	PD9774b	13	40897952	G	T	-	-	-	-	-	-	34	0	0	55	6	10.90909091	0	0	NA	0	0	NA	0.412209864	0	0	0.587790136	1	0	0.412209864	unphased	0.530598847	1.287205606	0.412209864	0.00125	0.99625	0.0025	0	2	3.67E-07	1	1	1	NA	NA	NA	NA
1351289	1206556913	PD9774b	13	45290903	C	T	-	-	-	-	-	-	30	0	0	42	5	11.9047619	0	0	NA	0	0	NA	0.412209864	0	0	0.587790136	1	0	0.412209864	unphased	0.57902652	1.404688658	0.412209864	0	1	0	0	2	2.28E-06	1	1	1	NA	NA	NA	NA
1351289	1206557480	PD9774b	13	53527659	C	T	-	-	-	-	-	-	31	0	0	24	5	20.83333333	0	0	NA	0	0	NA	0.412209864	0	0	0.587790136	1	0	0.412209864	unphased	1.01329641	1.01329641	1	0	0.99625	0.00375	0	2	1.23E-07	1	1	1	NA	NA	NA	NA
1351289	1206558127	PD9774b	13	63416889	G	T	-	-	-	-	-	-	32	0	0	61	8	13.1147541	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.714965627	0.714965627	1	0.00125	0.99875	0	0	2	9.09E-10	1	1	1	NA	NA	NA	NA
1351289	1206558457	PD9774b	13	65007781	A	T	-	-	-	-	-	-	48	0	0	42	11	26.19047619	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.427803379	1.427803379	1	0	0.9925	0.0075	0	2	1.81E-16	1	1	1	NA	NA	NA	NA
1351289	1206558487	PD9774b	13	65460147	G	T	-	-	-	-	-	-	38	0	0	42	5	11.9047619	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.649001536	0.649001536	1	0.0025	0.9975	0	0	2	2.28E-06	1	1	1	NA	NA	NA	NA
1351289	1206558839	PD9774b	13	69505189	G	T	-	-	-	-	-	-	29	0	0	39	5	12.82051282	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.698924731	0.698924731	1	0.0025	0.9975	0	0	2	1.56E-06	1	1	1	NA	NA	NA	NA
1351289	1206558841	PD9774b	13	69514269	A	T	-	-	-	-	-	-	39	0	0	55	5	9.090909091	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.495601173	0.495601173	1	0.0075	0.9925	0	0	2	8.83E-06	1	1	1	NA	NA	NA	NA
1351289	1206558857	PD9774b	13	69679436	G	T	-	-	-	-	-	-	35	0	0	40	6	15	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.817741935	0.817741935	1	0.00125	0.9975	0.00125	0	2	5.18E-08	1	1	1	NA	NA	NA	NA
1351289	1206558884	PD9774b	13	69876236	A	T	-	-	-	-	-	-	43	0	0	40	4	10	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.54516129	0.54516129	1	0.0025	0.9975	0	0	2	4.95E-05	1	1	1	NA	NA	NA	NA
1351289	1206558996	PD9774b	13	71128029	C	T	-	-	-	-	-	-	40	0	0	50	5	10	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.54516129	0.54516129	1	0.00875	0.99	0.00125	0	2	5.49E-06	1	1	1	NA	NA	NA	NA
1351289	1206559051	PD9774b	13	71683394	A	T	-	-	-	-	-	-	46	0	0	53	9	16.98113208	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.925745587	0.925745587	1	0.0025	0.9975	0	0	2	7.10E-12	1	1	1	NA	NA	NA	NA
1351289	1206559354	PD9774b	13	75667400	A	T	-	-	-	-	-	-	33	0	0	57	4	7.01754386	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.382569327	0.382569327	1	0.02375	0.97625	0	0	2	0.000199821	1	1	1	NA	NA	NA	NA
1351289	1206559408	PD9774b	13	76261234	G	T	LMO7	CCDS9454.1	r.?	-	-	intronic	28	0	0	53	9	16.98113208	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.925745587	0.925745587	1	0	1	0	0	2	7.10E-12	1	1	1	NA	NA	NA	NA
1351289	1206559523	PD9774b	13	77806274	A	T	MYCBP2	CCDS31994.1	r.?	-	-	intronic	31	0	0	60	5	8.333333333	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.454301075	0.454301075	1	0.02125	0.97875	0	0	2	1.36E-05	1	1	1	NA	NA	NA	NA
1351289	1206559872	PD9774b	13	82380138	G	T	-	-	-	-	-	-	37	0	0	43	9	20.93023256	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.141035259	1.141035259	1	0.00125	0.99875	0	0	2	9.45E-13	1	1	1	NA	NA	NA	NA
1351289	1206559929	PD9774b	13	83306673	G	T	-	-	-	-	-	-	34	0	0	66	11	16.66666667	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.908602151	0.908602151	1	0	1	0	0	2	4.07E-14	1	1	1	NA	NA	NA	NA
1351289	1206559994	PD9774b	13	84321017	A	T	-	-	-	-	-	-	29	0	0	36	6	16.66666667	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.908602151	0.908602151	1	0.0025	0.9975	0	0	2	2.68E-08	1	1	1	NA	NA	NA	NA
1351289	1206560034	PD9774b	13	85045856	A	T	-	-	-	-	-	-	46	0	0	42	4	9.523809524	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.519201229	0.519201229	1	0.01	0.98875	0.00125	0	2	6.01E-05	1	1	1	NA	NA	NA	NA
1351289	1206560418	PD9774b	13	89924361	G	T	-	-	-	-	-	-	41	0	0	45	5	11.11111111	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.605734767	0.605734767	1	0.00625	0.99375	0	0	2	3.23E-06	1	1	1	NA	NA	NA	NA
1351289	1206560973	PD9774b	13	97535721	A	T	-	-	-	-	-	-	35	0	0	59	6	10.16949153	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.554401312	0.554401312	1	0.00625	0.99375	0	0	2	5.61E-07	1	1	1	NA	NA	NA	NA
1351289	1206561077	PD9774b	13	98981407	C	T	FARP1	CCDS9487.1	r.?	-	-	intronic	30	0	0	44	5	11.36363636	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.619501466	0.619501466	1	0.00625	0.99375	0	0	2	2.88E-06	1	1	1	NA	NA	NA	NA
1351289	1206561589	PD9774b	13	105671335	C	T	-	-	-	-	-	-	25	0	0	43	7	16.27906977	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.887471868	0.887471868	1	0	1	0	0	2	2.15E-09	1	1	1	NA	NA	NA	NA
1351289	1206561611	PD9774b	13	105995729	A	T	-	-	-	-	-	-	38	0	0	42	3	7.142857143	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.389400922	0.389400922	1	0.01625	0.98375	0	0	2	0.001240292	1	1	1	NA	NA	NA	NA
1351289	1206561629	PD9774b	13	106179040	G	T	-	-	-	-	-	-	34	0	0	46	11	23.91304348	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.303646564	1.303646564	1	0	0.99375	0.00625	0	2	5.55E-16	1	1	1	NA	NA	NA	NA
1351289	1206561911	PD9774b	13	109861807	G	T	MYO16	CCDS32008.1	r.?	-	-	downstream	32	0	0	41	5	12.19512195	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.664830842	0.664830842	1	0.0025	0.9975	0	0	2	2.02E-06	1	1	1	NA	NA	NA	NA
1351289	1206562029	PD9774b	13	111222574	C	T	-	-	-	-	-	-	39	0	0	43	12	27.90697674	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.521380345	1.521380345	1	0	0.995	0.005	0	2	3.24E-18	1	1	1	NA	NA	NA	NA
1351289	1206562069	PD9774b	13	111878703	A	T	ARHGEF7	CCDS45068.1	r.?	-	-	intronic	34	0	0	52	5	9.615384615	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.524193548	0.524193548	1	0.0175	0.9825	0	0	2	6.68E-06	1	1	1	NA	NA	NA	NA
1351289	1206562209	PD9774b	13	113335703	C	T	C13orf35	CCDS9526.1	r.?	-	-	intronic	36	0	0	36	5	13.88888889	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.757168459	0.757168459	1	0.00125	0.99875	0	0	2	1.04E-06	1	1	1	NA	NA	NA	NA
1351289	1206563274	PD9774b	14	19257285	G	T	-	-	-	-	-	-	26	0	0	27	5	18.51851852	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.19474313	1.19474313	1	0	0.9975	0.0025	0	2	2.30E-07	1	1	1	NA	NA	NA	NA
1351289	1206563346	PD9774b	14	19502979	A	T	-	-	-	-	-	-	16	0	0	21	4	19.04761905	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.228878648	1.228878648	1	0.00125	0.99375	0.005	0	2	3.49E-06	1	1	1	NA	NA	NA	NA
1351289	1206563772	PD9774b	14	22320852	C	T	-	-	-	-	-	-	29	0	0	44	5	11.36363636	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.73313783	0.73313783	1	0.00125	0.99875	0	0	2	2.88E-06	1	1	1	NA	NA	NA	NA
1351289	1206563805	PD9774b	14	22955632	C	T	TRAC	ENST00000446346	r.?	-	-	intronic	28	0	0	55	14	25.45454545	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.642228739	1.642228739	1	0	0.975	0.025	0	2	2.19E-20	1	1	1	NA	NA	NA	NA
1351289	1206563904	PD9774b	14	23740203	G	T	HOMEZ	CCDS45085.1	r.?	-	-	downstream	36	0	0	49	4	8.163265306	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.526662278	0.526662278	1	0.005	0.995	0	0	2	0.000110643	1	1	1	NA	NA	NA	NA
1351289	1206564065	PD9774b	14	25798350	A	T	-	-	-	-	-	-	35	0	0	51	7	13.7254902	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.885515497	0.885515497	1	0.00125	0.99875	0	0	2	7.46E-09	1	1	1	NA	NA	NA	NA
1351289	1206564080	PD9774b	14	25954435	G	T	-	-	-	-	-	-	39	0	0	58	5	8.620689655	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.556173526	0.556173526	1	0.0075	0.99125	0.00125	0	2	1.15E-05	1	1	1	NA	NA	NA	NA
1351289	1206564082	PD9774b	14	25972037	G	T	-	-	-	-	-	-	32	0	0	61	7	11.47540984	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.740349022	0.740349022	1	0.0025	0.9975	0	0	2	2.69E-08	1	1	1	NA	NA	NA	NA
1351289	1206564284	PD9774b	14	28214839	A	T	-	-	-	-	-	-	38	0	0	45	6	13.33333333	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.860215054	0.860215054	1	0.00125	0.99875	0	0	2	1.08E-07	1	1	1	NA	NA	NA	NA
1351289	1206564286	PD9774b	14	28228988	G	T	-	-	-	-	-	-	40	0	0	58	11	18.96551724	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.223581758	1.223581758	1	0	1	0	0	2	8.96E-15	1	1	1	NA	NA	NA	NA
1351289	1206564476	PD9774b	14	30355871	C	T	PRKD1	CCDS9637.1	r.?	-	-	intronic	36	0	0	48	5	10.41666667	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.672043011	0.672043011	1	0.0025	0.9975	0	0	2	4.47E-06	1	1	1	NA	NA	NA	NA
1351289	1206564486	PD9774b	14	30489685	A	T	-	-	-	-	-	-	33	0	0	49	7	14.28571429	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.921658986	0.921658986	1	0.0025	0.99625	0.00125	0	2	5.58E-09	1	1	1	NA	NA	NA	NA
1351289	1206564519	PD9774b	14	31041720	A	T	G2E3	CCDS9638.1	r.?	-	-	intronic	37	0	0	57	7	12.28070175	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.792303339	0.792303339	1	0.00125	0.99875	0	0	2	1.66E-08	1	1	1	NA	NA	NA	NA
1351289	1206565183	PD9774b	14	38384173	C	T	-	-	-	-	-	-	28	0	0	50	11	22	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.419354839	1.419354839	1	0	0.9975	0.0025	0	2	1.52E-15	1	1	1	NA	NA	NA	NA
1351289	1206565193	PD9774b	14	38575799	C	T	-	-	-	-	-	-	37	0	0	43	5	11.62790698	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.750187547	0.750187547	1	0.00375	0.99625	0	0	2	2.57E-06	1	1	1	NA	NA	NA	NA
1351289	1206565322	PD9774b	14	39912721	A	T	-	-	-	-	-	-	41	0	0	57	9	15.78947368	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.018675722	1.018675722	1	0.0025	0.99625	0.00125	0	2	1.42E-11	1	1	1	NA	NA	NA	NA
1351289	1206565331	PD9774b	14	40007048	C	T	-	-	-	-	-	-	35	0	0	60	5	8.333333333	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.537634409	0.537634409	1	0.00875	0.99125	0	0	2	1.36E-05	1	1	1	NA	NA	NA	NA
1351289	1206565359	PD9774b	14	40363276	G	T	-	-	-	-	-	-	33	0	0	54	5	9.259259259	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.597371565	0.597371565	1	0.00625	0.99375	0	0	2	8.06E-06	1	1	1	NA	NA	NA	NA
1351289	1206565366	PD9774b	14	40472276	G	T	-	-	-	-	-	-	43	0	0	68	5	7.352941176	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.474383302	0.474383302	1	0.01125	0.98875	0	0	2	2.51E-05	1	1	1	NA	NA	NA	NA
1351289	1206565525	PD9774b	14	42384592	G	T	-	-	-	-	-	-	42	0	0	59	5	8.474576271	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.546746856	0.546746856	1	0.00875	0.99125	0	0	2	1.25E-05	1	1	1	NA	NA	NA	NA
1351289	1206565571	PD9774b	14	42992278	C	T	-	-	-	-	-	-	38	0	0	62	6	9.677419355	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.624349636	0.624349636	1	0.00375	0.99625	0	0	2	7.56E-07	1	1	1	NA	NA	NA	NA
1351289	1206565674	PD9774b	14	44027892	G	T	-	-	-	-	-	-	32	0	0	59	8	13.55932203	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.87479497	0.87479497	1	0.00125	0.99875	0	0	2	6.90E-10	1	1	1	NA	NA	NA	NA
1351289	1206565719	PD9774b	14	44479640	C	T	-	-	-	-	-	-	38	0	0	68	8	11.76470588	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.759013283	0.759013283	1	0.00125	0.99875	0	0	2	2.21E-09	1	1	1	NA	NA	NA	NA
1351289	1206565775	PD9774b	14	45417943	C	T	KLHL28	CCDS9680.1	r.?	-	-	intronic	41	0	0	62	10	16.12903226	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.040582726	1.040582726	1	0	1	0	0	2	8.29E-13	1	1	1	NA	NA	NA	NA
1351289	1206565921	PD9774b	14	47484239	C	T	MDGA2	CCDS41948.1	r.?	-	-	intronic	44	0	0	53	9	16.98113208	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.095556908	1.095556908	1	0	0.99625	0.00375	0	2	7.10E-12	1	1	1	NA	NA	NA	NA
1351289	1206566188	PD9774b	14	50398715	C	T	-	-	-	-	-	-	28	0	0	43	8	18.60465116	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.200300075	1.200300075	1	0	0.9975	0.0025	0	2	4.85E-11	1	1	1	NA	NA	NA	NA
1351289	1206566488	PD9774b	14	53844712	G	T	-	-	-	-	-	-	38	0	0	57	5	8.771929825	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.565930956	0.565930956	1	0.00375	0.99625	0	0	2	1.05E-05	1	1	1	NA	NA	NA	NA
1351289	1206566497	PD9774b	14	54015136	C	T	-	-	-	-	-	-	37	0	0	62	7	11.29032258	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.728407908	0.728407908	1	0.00625	0.99375	0	0	2	3.02E-08	1	1	1	NA	NA	NA	NA
1351289	1206566533	PD9774b	14	54515342	C	T	-	-	-	-	-	-	39	0	0	45	5	11.11111111	2	0	0	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.716845878	0.716845878	1	0.005	0.995	0	0	2	3.23E-06	1	1	1	NA	NA	NA	NA
1351289	1206566559	PD9774b	14	54794467	A	T	-	-	-	-	-	-	27	0	0	51	5	9.803921569	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.632511069	0.632511069	1	0.005	0.995	0	0	2	6.06E-06	1	1	1	NA	NA	NA	NA
1351289	1206566709	PD9774b	14	57095893	C	T	C14orf101	CCDS9727.2	r.?	-	-	intronic	42	0	0	50	5	10	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.64516129	0.64516129	1	0.00375	0.99625	0	0	2	5.49E-06	1	1	1	NA	NA	NA	NA
1351289	1206566740	PD9774b	14	57453788	C	T	-	-	-	-	-	-	33	0	0	36	4	11.11111111	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.716845878	0.716845878	1	0.00375	0.995	0.00125	0	2	3.24E-05	1	1	1	NA	NA	NA	NA
1351289	1206566762	PD9774b	14	57820324	A	T	-	-	-	-	-	-	28	0	0	35	3	8.571428571	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.552995392	0.552995392	1	0.00375	0.99625	0	0	2	0.000725791	1	1	1	NA	NA	NA	NA
1351289	1206566794	PD9774b	14	58261091	A	T	-	-	-	-	-	-	37	0	0	41	6	14.63414634	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.944138474	0.944138474	1	0	1	0	0	2	6.05E-08	1	1	1	NA	NA	NA	NA
1351289	1206567070	PD9774b	14	61937242	G	T	PRKCH	CCDS9752.1	r.?	-	-	intronic	27	0	0	47	4	8.510638298	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.549073439	0.549073439	1	0.00625	0.99375	0	0	2	9.39E-05	1	1	1	NA	NA	NA	NA
1351289	1206567091	PD9774b	14	62219302	C	T	HIF1A	CCDS9753.1	r.?	-	-	downstream	31	0	0	36	4	11.11111111	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.716845878	0.716845878	1	0	1	0	0	2	3.24E-05	1	1	1	NA	NA	NA	NA
1351289	1206567698	PD9774b	14	70814274	G	T	COX16	CCDS9802.1	r.?	-	-	intronic	38	0	0	40	4	10	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.64516129	0.64516129	1	0.00375	0.99625	0	0	2	4.95E-05	1	1	1	NA	NA	NA	NA
1351289	1206567781	PD9774b	14	71975724	C	T	-	-	-	-	-	-	35	0	0	47	5	10.63829787	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.686341798	0.686341798	1	0.00125	0.99875	0	0	2	4.02E-06	1	1	1	NA	NA	NA	NA
1351289	1206568071	PD9774b	14	75101231	G	T	-	-	-	-	-	-	29	0	0	31	4	12.90322581	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.832466181	0.832466181	1	0.0025	0.99625	0.00125	0	2	1.77E-05	1	1	1	NA	NA	NA	NA
1351289	1206568361	PD9774b	14	78336630	C	T	ADCK1	CCDS9869.1	r.?	-	-	intronic	22	0	0	32	4	12.5	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.806451613	0.806451613	1	0.005	0.99375	0.00125	0	2	2.01E-05	1	1	1	NA	NA	NA	NA
1351289	1206568474	PD9774b	14	80231580	G	T	NRXN3	CCDS45145.1	r.?	-	-	intronic	40	0	0	48	6	12.5	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.806451613	0.806451613	1	0.00125	0.9975	0.00125	0	2	1.60E-07	1	1	1	NA	NA	NA	NA
1351289	1206568499	PD9774b	14	80781611	A	T	AC010849.1	ENST00000504475	r.?	-	-	intronic	30	0	0	47	6	12.76595745	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.823610158	0.823610158	1	0.00125	0.99875	0	0	2	1.41E-07	1	1	1	NA	NA	NA	NA
1351289	1206568578	PD9774b	14	82072130	G	T	-	-	-	-	-	-	35	0	0	50	7	14	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.903225806	0.903225806	1	0	0.99875	0.00125	0	2	6.46E-09	1	1	1	NA	NA	NA	NA
1351289	1206568942	PD9774b	14	87176239	G	T	-	-	-	-	-	-	31	0	0	61	8	13.1147541	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.846113168	0.846113168	1	0.00125	0.99875	0	0	2	9.09E-10	1	1	1	NA	NA	NA	NA
1351289	1206568976	PD9774b	14	87651112	C	T	-	-	-	-	-	-	42	0	0	59	5	8.474576271	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.546746856	0.546746856	1	0.005	0.995	0	0	2	1.25E-05	1	1	1	NA	NA	NA	NA
1351289	1206569003	PD9774b	14	88279020	C	T	-	-	-	-	-	-	38	0	0	53	5	9.433962264	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.608642727	0.608642727	1	0.005	0.995	0	0	2	7.34E-06	1	1	1	NA	NA	NA	NA
1351289	1206569043	PD9774b	14	88733099	G	T	KCNK10	CCDS9881.1	r.?	-	-	intronic	25	0	0	48	6	12.5	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.806451613	0.806451613	1	0.0025	0.9975	0	0	2	1.60E-07	1	1	1	NA	NA	NA	NA
1351289	1206569887	PD9774b	14	99958594	G	T	CCNK	CCDS45160.1	r.?	-	-	intronic	30	0	0	58	8	13.79310345	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.889877642	0.889877642	1	0.00125	0.9975	0.00125	0	2	5.99E-10	1	1	1	NA	NA	NA	NA
1351289	1206569952	PD9774b	14	100870460	G	T	WDR25	CCDS32157.1	r.?	-	-	intronic	31	0	0	46	4	8.695652174	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.561009818	0.561009818	1	0.00625	0.99375	0	0	2	8.62E-05	1	1	1	NA	NA	NA	NA
1351289	1206570037	PD9774b	14	102067487	A	T	-	-	-	-	-	-	37	0	0	46	9	19.56521739	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.26227209	1.26227209	1	0	0.99375	0.00625	0	2	1.82E-12	1	1	1	NA	NA	NA	NA
1351289	1206570174	PD9774b	14	103820198	C	T	-	-	-	-	-	-	18	0	0	40	6	15	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.967741935	0.967741935	1	0.00125	0.9975	0.00125	0	2	5.18E-08	1	1	1	NA	NA	NA	NA
1351289	1206570737	PD9774b	14	106846516	G	T	-	-	-	-	-	-	29	0	0	40	4	10	0	0	NA	0	0	NA	0.460717547	0	0	0.539282453	1	0	0.460717547	unphased	0.491233045	1.066234721	0.460717547	0.00125	0.995	0.00375	0	2	4.95E-05	1	1	1	NA	NA	NA	NA
1351289	1206572529	PD9774b	15	20161838	G	T	-	-	-	-	-	-	39	0	0	51	5	9.803921569	0	0	NA	0	0	NA	1.455522118	1	0	0.544477882	1	1	0.455522118	unphased	0.579130884	1.271356234	0.455522118	0.00125	0.9975	0.00125	0	2	6.06E-06	1	1	1	NA	NA	NA	NA
1351289	1206573277	PD9774b	15	23758109	G	T	-	-	-	-	-	-	37	0	0	62	9	14.51612903	0	0	NA	0	0	NA	1.455522118	1	0	0.544477882	1	1	0.455522118	unphased	0.857487342	0.857487342	1	0.00375	0.99625	0	0	2	3.12E-11	1	1	1	NA	NA	NA	NA
1351289	1206573498	PD9774b	15	24844294	G	T	-	-	-	-	-	-	23	0	0	63	5	7.936507937	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.432667691	0.432667691	1	0.02125	0.97875	0	0	2	1.73E-05	1	1	1	NA	NA	NA	NA
1351289	1206573597	PD9774b	15	25828508	A	T	-	-	-	-	-	-	32	0	0	62	5	8.064516129	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.439646202	0.439646202	1	0.02125	0.97875	0	0	2	1.60E-05	1	1	1	NA	NA	NA	NA
1351289	1206573708	PD9774b	15	26718158	G	T	-	-	-	-	-	-	33	0	0	64	10	15.625	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.851814516	0.851814516	1	0.0025	0.9975	0	0	2	1.16E-12	1	1	1	NA	NA	NA	NA
1351289	1206573810	PD9774b	15	27758573	G	T	GABRG3	CCDS45195.1	r.?	-	-	intronic	18	0	0	59	12	20.33898305	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.312192455	1.312192455	1	0	0.99625	0.00375	0	2	2.20E-16	1	1	1	NA	NA	NA	NA
1351289	1206573857	PD9774b	15	28477231	A	T	HERC2	CCDS10021.1	r.?	-	-	intronic	28	0	0	46	8	17.39130435	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.122019635	1.122019635	1	0.00125	0.99875	0	0	2	8.61E-11	1	1	1	NA	NA	NA	NA
1351289	1206574041	PD9774b	15	30471470	C	T	-	-	-	-	-	-	13	0	0	24	4	16.66666667	0	0	NA	0	0	NA	0.769405399	0	0	0.230594601	1	0	0.769405399	unphased	0.870169717	0.870169717	1	0.0025	0.99625	0.00125	0	2	6.13E-06	1	1	1	NA	NA	NA	NA
1351289	1206574120	PD9774b	15	31253850	C	T	MTMR10	CCDS45204.1	r.?	-	-	intronic	40	0	0	47	5	10.63829787	0	0	NA	0	0	NA	0.769405399	0	0	0.230594601	1	0	0.769405399	unphased	0.555427479	0.721891839	0.769405399	0.00375	0.995	0.00125	0	2	4.02E-06	1	1	1	NA	NA	NA	NA
1351289	1206574202	PD9774b	15	32403145	G	T	CHRNA7	CCDS10027.1	r.?	-	-	intronic	27	0	0	49	6	12.24489796	0	0	NA	0	0	NA	0.769405399	0	0	0.230594601	1	0	0.769405399	unphased	0.639308364	0.83091224	0.769405399	0.00375	0.995	0.00125	0	2	1.82E-07	1	1	1	NA	NA	NA	NA
1351289	1206574398	PD9774b	15	34583887	C	T	SLC12A6	CCDS42011.1	r.?	-	-	intronic	28	0	0	41	7	17.07317073	0	0	NA	0	0	NA	0.769405399	0	0	0.230594601	1	0	0.769405399	unphased	0.891393369	0.891393369	1	0.0025	0.9975	0	0	2	1.51E-09	1	1	1	NA	NA	NA	NA
1351289	1206574407	PD9774b	15	34723103	C	T	-	-	-	-	-	-	20	0	0	41	5	12.19512195	2	0	0	0	0	NA	0.769405399	0	0	0.230594601	1	0	0.769405399	unphased	0.636709549	0.827534548	0.769405399	0.00125	0.99875	0	0	2	2.02E-06	1	1	1	NA	NA	NA	NA
1351289	1206574656	PD9774b	15	37997670	A	T	-	-	-	-	-	-	40	0	0	42	7	16.66666667	0	0	NA	0	0	NA	0.769405399	0	0	0.230594601	1	0	0.769405399	unphased	0.870169717	0.870169717	1	0	1	0	0	2	1.81E-09	1	1	1	NA	NA	NA	NA
1351289	1206575027	PD9774b	15	43159566	A	T	TTBK2	CCDS42029.1	r.?	-	-	intronic	32	0	0	49	5	10.20408163	0	0	NA	0	0	NA	0.769405399	0	0	0.230594601	1	0	0.769405399	unphased	0.53275697	0.692426866	0.769405399	0.0025	0.9975	0	0	2	4.96E-06	1	1	1	NA	NA	NA	NA
1351289	1206575244	PD9774b	15	46596541	G	T	-	-	-	-	-	-	35	0	0	54	10	18.51851852	0	0	NA	0	0	NA	0.769405399	0	0	0.230594601	1	0	0.769405399	unphased	0.966855241	0.966855241	1	0.00125	0.99875	0	0	2	1.91E-13	1	1	1	NA	NA	NA	NA
1351289	1206575455	PD9774b	15	47927455	A	T	-	-	-	-	-	-	32	0	0	51	10	19.60784314	0	0	NA	0	0	NA	0.769405399	0	0	0.230594601	1	0	0.769405399	unphased	1.023729079	1.023729079	1	0	1	0	0	2	1.04E-13	1	1	1	NA	NA	NA	NA
1351289	1206575616	PD9774b	15	50715442	C	T	USP8	CCDS10137.1	r.?	-	-	upstream	31	0	0	38	7	18.42105263	0	0	NA	0	0	NA	0.769405399	0	0	0.230594601	1	0	0.769405399	unphased	0.961766529	0.961766529	1	0	1	0	0	2	8.61E-10	1	1	1	NA	NA	NA	NA
1351289	1206575704	PD9774b	15	51916109	G	T	DMXL2	CCDS10141.1	r.?	-	-	upstream	29	0	0	50	7	14	0	0	NA	0	0	NA	0.769405399	0	0	0.230594601	1	0	0.769405399	unphased	0.730942562	0.950009661	0.769405399	0.0025	0.995	0.0025	0	2	6.46E-09	1	1	1	NA	NA	NA	NA
1351289	1206575710	PD9774b	15	51998526	C	T	SCG3	CCDS10142.1	r.?	-	-	intronic	28	0	0	57	5	8.771929825	2	0	0	0	0	NA	0.769405399	0	0	0.230594601	1	0	0.769405399	unphased	0.457984062	0.595244148	0.769405399	0.00375	0.99625	0	0	2	1.05E-05	1	1	1	NA	NA	NA	NA
1351289	1206575967	PD9774b	15	55352682	C	T	-	-	-	-	-	-	26	0	0	34	4	11.76470588	0	0	NA	0	0	NA	0.769405399	0	0	0.230594601	1	0	0.769405399	unphased	0.614237447	0.798327446	0.769405399	0.00125	0.9975	0.00125	0	2	2.57E-05	1	1	1	NA	NA	NA	NA
1351289	1206576118	PD9774b	15	57291793	C	T	TCF12	CCDS10159.1	r.?	-	-	intronic	31	0	0	41	6	14.63414634	0	0	NA	0	0	NA	0.769405399	0	0	0.230594601	1	0	0.769405399	unphased	0.764051459	0.993041457	0.769405399	0	0.99875	0.00125	0	2	6.05E-08	1	1	1	NA	NA	NA	NA
1351289	1206576461	PD9774b	15	61874489	G	T	-	-	-	-	-	-	34	0	0	47	9	19.14893617	0	0	NA	0	0	NA	0.769405399	0	0	0.230594601	1	0	0.769405399	unphased	0.999769462	0.999769462	1	0	1	0	0	2	2.24E-12	1	1	1	NA	NA	NA	NA
1351289	1206576750	PD9774b	15	65396630	G	T	AC013553.1	ENST00000502113	r.?	-	-	upstream	34	0	0	68	11	16.17647059	0	0	NA	0	0	NA	0.769405399	0	0	0.230594601	1	0	0.769405399	unphased	0.84457649	1.097700238	0.769405399	0.00125	0.99875	0	0	2	5.76E-14	1	1	1	NA	NA	NA	NA
1351289	1206577097	PD9774b	15	69719425	A	T	KIF23	CCDS32278.1	r.?	-	-	intronic	43	0	0	64	5	7.8125	0	0	NA	0	0	NA	0.769405399	0	0	0.230594601	1	0	0.769405399	unphased	0.407892055	0.53013932	0.769405399	0.00625	0.99375	0	0	2	1.86E-05	1	1	1	NA	NA	NA	NA
1351289	1206578041	PD9774b	15	82401898	C	T	-	-	-	-	-	-	34	0	0	58	8	13.79310345	0	0	NA	0	0	NA	0.769405399	0	0	0.230594601	1	0	0.769405399	unphased	0.720140456	0.935970109	0.769405399	0	0.9975	0.0025	0	2	5.99E-10	1	1	1	NA	NA	NA	NA
1351289	1206578307	PD9774b	15	86621550	C	T	-	-	-	-	-	-	47	0	0	36	4	11.11111111	0	0	NA	0	0	NA	0.769405399	0	0	0.230594601	1	0	0.769405399	unphased	0.580113145	0.753975921	0.769405399	0.00125	0.99875	0	0	2	3.24E-05	1	1	1	NA	NA	NA	NA
1351289	1206578497	PD9774b	15	89422894	C	T	HAPLN3	CCDS10346.1	r.?	-	-	intronic	32	0	0	36	7	19.44444444	0	0	NA	0	0	NA	0.769405399	0	0	0.230594601	1	0	0.769405399	unphased	1.015198003	1.015198003	1	0.00125	0.99625	0.0025	0	2	5.74E-10	1	1	1	NA	NA	NA	NA
1351289	1206578848	PD9774b	15	93564155	C	T	CHD2	CCDS10374.2	r.?	-	-	intronic	34	0	0	47	9	19.14893617	0	0	NA	0	0	NA	0.769405399	0	0	0.230594601	1	0	0.769405399	unphased	0.999769462	0.999769462	1	0	1	0	0	2	2.24E-12	1	1	1	NA	NA	NA	NA
1351289	1206578979	PD9774b	15	95233922	A	T	-	-	-	-	-	-	46	0	0	41	8	19.51219512	0	0	NA	0	0	NA	0.769405399	0	0	0.230594601	1	0	0.769405399	unphased	1.018735279	1.018735279	1	0.00125	0.99875	0	0	2	3.22E-11	1	1	1	NA	NA	NA	NA
1351289	1206579004	PD9774b	15	95558304	G	T	-	-	-	-	-	-	29	0	0	49	8	16.32653061	0	0	NA	0	0	NA	0.769405399	0	0	0.230594601	1	0	0.769405399	unphased	0.852411151	1.107882986	0.769405399	0	0.99625	0.00375	0	2	1.47E-10	1	1	1	NA	NA	NA	NA
1351289	1206579070	PD9774b	15	96637477	C	T	-	-	-	-	-	-	40	0	0	64	10	15.625	0	0	NA	0	0	NA	0.769405399	0	0	0.230594601	1	0	0.769405399	unphased	0.81578411	1.060278639	0.769405399	0.00125	0.9975	0.00125	0	2	1.16E-12	1	1	1	NA	NA	NA	NA
1351289	1206579243	PD9774b	15	98727696	G	T	-	-	-	-	-	-	34	0	0	50	7	14	0	0	NA	0	0	NA	0.769405399	0	0	0.230594601	1	0	0.769405399	unphased	0.730942562	0.950009661	0.769405399	0.0025	0.995	0.0025	0	2	6.46E-09	1	1	1	NA	NA	NA	NA
1351289	1206579334	PD9774b	15	99992399	C	T	-	-	-	-	-	-	24	0	0	50	6	12	0	0	NA	0	0	NA	0.769405399	0	0	0.230594601	1	0	0.769405399	unphased	0.626522196	0.814293995	0.769405399	0.005	0.995	0	0	2	2.06E-07	1	1	1	NA	NA	NA	NA
1351289	1206579486	PD9774b	15	101673971	G	T	-	-	-	-	-	-	31	0	0	46	11	23.91304348	0	0	NA	0	0	NA	0.769405399	0	0	0.230594601	1	0	0.769405399	unphased	1.248504377	1.248504377	1	0	0.99625	0.00375	0	2	5.55E-16	1	1	1	NA	NA	NA	NA
1351289	1206579712	PD9774b	16	722449	G	T	WDR90	CCDS42092.1	r.?	-	-	downstream	29	0	0	43	7	16.27906977	0	0	NA	0	0	NA	1.176144945	1	0	0.823855055	2	0	0.176144945	unphased	0.916146626	0.916146626	1	0.00125	0.99875	0	0	2	2.15E-09	1	1	1	NA	NA	NA	NA
1351289	1206579829	PD9774b	16	1327298	G	T	PRSS29P	ENST00000334002	r.?	-	-	upstream	31	0	0	27	8	29.62962963	0	0	NA	0	0	NA	1.176144945	1	0	0.823855055	2	0	0.176144945	unphased	1.667483807	1.667483807	1	0.00125	0.9875	0.01125	0	2	7.97E-13	1	1	1	NA	NA	NA	NA
1351289	1206580085	PD9774b	16	4187845	C	T	-	-	-	-	-	-	25	0	0	33	4	12.12121212	0	0	NA	0	0	NA	1.176144945	1	0	0.823855055	2	0	0.176144945	unphased	0.682152466	0.682152466	1	0.00375	0.99625	0	0	2	2.28E-05	1	1	1	NA	NA	NA	NA
1351289	1206580254	PD9774b	16	6053093	A	T	-	-	-	-	-	-	31	0	0	36	14	38.88888889	0	0	NA	0	0	NA	1.176144945	1	0	0.823855055	2	0	0.176144945	unphased	2.188572496	1.860801686	1.176144945	0	0.92375	0.07625	0	2	2.09E-23	1	1	1	NA	NA	NA	NA
1351289	1206580345	PD9774b	16	6983570	C	T	-	-	-	-	-	-	26	0	0	53	11	20.75471698	0	0	NA	0	0	NA	1.176144945	1	0	0.823855055	2	0	0.176144945	unphased	1.168025214	1.168025214	1	0	0.99875	0.00125	0	2	3.07E-15	1	1	1	NA	NA	NA	NA
1351289	1206581048	PD9774b	16	14587834	C	T	PARN	CCDS45419.1	r.?	-	-	intronic	48	0	0	47	11	23.40425532	0	0	NA	0	0	NA	0.807308851	0	0	0.192691149	1	0	0.807308851	unphased	1.230811474	1.230811474	1	0	0.9975	0.0025	0	2	7.21E-16	1	1	1	NA	NA	NA	NA
1351289	1206581067	PD9774b	16	14770209	C	T	PLA2G10	CCDS10555.1	r.?	-	-	intronic	33	0	0	48	7	14.58333333	0	0	NA	0	0	NA	0.807308851	0	0	0.192691149	1	0	0.807308851	unphased	0.766926089	0.949978547	0.807308851	0.00125	0.99875	0	0	2	4.81E-09	1	1	1	NA	NA	NA	NA
1351289	1206581137	PD9774b	16	15266286	C	T	-	-	-	-	-	-	26	0	0	45	7	15.55555556	0	0	NA	0	0	NA	0.807308851	0	0	0.192691149	1	0	0.807308851	unphased	0.818054495	1.01331045	0.807308851	0.00375	0.995	0.00125	0	2	3.00E-09	1	1	1	NA	NA	NA	NA
1351289	1206581202	PD9774b	16	15844528	G	T	MYH11	CCDS45424.1	r.?	-	-	intronic	25	0	0	30	6	20	0	0	NA	0	0	NA	0.807308851	0	0	0.192691149	1	0	0.807308851	unphased	1.051784351	1.051784351	1	0.00125	0.9975	0.00125	0	2	8.37E-09	1	1	1	NA	NA	NA	NA
1351289	1206581345	PD9774b	16	17294721	C	T	XYLT1	CCDS10569.1	r.?	-	-	intronic	42	0	0	37	7	18.91891892	0	0	NA	0	0	NA	0.807308851	0	0	0.192691149	1	0	0.807308851	unphased	0.994931143	0.994931143	1	0	1	0	0	2	7.05E-10	1	1	1	NA	NA	NA	NA
1351289	1206581404	PD9774b	16	18083199	G	T	-	-	-	-	-	-	32	0	0	55	7	12.72727273	1	0	0	0	0	NA	0.807308851	0	0	0.192691149	1	0	0.807308851	unphased	0.669317314	0.829072187	0.807308851	0	1	0	0	2	1.28E-08	1	1	1	NA	NA	NA	NA
1351289	1206581416	PD9774b	16	18233231	A	T	-	-	-	-	-	-	27	0	0	29	3	10.34482759	0	0	NA	0	0	NA	0.807308851	0	0	0.192691149	1	0	0.807308851	unphased	0.544026388	0.673876408	0.807308851	0.00625	0.99375	0	0	2	0.000414371	1	1	1	NA	NA	NA	NA
1351289	1206581440	PD9774b	16	18600673	C	T	-	-	-	-	-	-	28	0	0	46	11	23.91304348	0	0	NA	0	0	NA	0.807308851	0	0	0.192691149	1	0	0.807308851	unphased	1.257568246	1.257568246	1	0	0.995	0.005	0	2	5.55E-16	1	1	1	NA	NA	NA	NA
1351289	1206581843	PD9774b	16	22257241	C	T	EEF2K	CCDS10604.1	r.?	-	-	intronic	33	0	0	38	4	10.52631579	0	0	NA	0	0	NA	0.807308851	0	0	0.192691149	1	0	0.807308851	unphased	0.553570711	0.685698801	0.807308851	0.0025	0.9975	0	0	2	4.03E-05	1	1	1	NA	NA	NA	NA
1351289	1206582477	PD9774b	16	29426900	A	T	-	-	-	-	-	-	23	0	0	25	3	12	0	0	NA	0	0	NA	1.570280508	1	0	0.429719492	1	1	0.570280508	unphased	0.722627209	1.267143449	0.570280508	0.00125	0.9975	0.00125	0	2	0.00026475	1	1	1	NA	NA	NA	NA
1351289	1206582526	PD9774b	16	29923415	C	T	KCTD13	CCDS10661.1	r.?	-	-	intronic	28	0	0	31	4	12.90322581	0	0	NA	0	0	NA	1.570280508	1	0	0.429719492	1	1	0.570280508	unphased	0.777018505	0.777018505	1	0.00125	0.99875	0	0	2	1.77E-05	1	1	1	NA	NA	NA	NA
1351289	1206583655	PD9774b	16	32413903	G	T	-	-	-	-	-	-	30	0	0	68	10	14.70588235	0	0	NA	0	0	NA	1.570280508	1	0	0.429719492	1	1	0.570280508	unphased	0.88557256	0.88557256	1	0	1	0	0	2	2.18E-12	1	1	1	NA	NA	NA	NA
1351289	1206584094	PD9774b	16	32611965	C	T	-	-	-	-	-	-	54	0	0	48	6	12.5	0	0	NA	0	0	NA	1.570280508	1	0	0.429719492	1	1	0.570280508	unphased	0.752736676	0.752736676	1	0.00375	0.99625	0	0	2	1.60E-07	1	1	1	NA	NA	NA	NA
1351289	1206589111	PD9774b	16	34950180	A	T	-	-	-	-	-	-	21	0	0	26	4	15.38461538	0	0	NA	0	0	NA	1.570280508	1	0	0.429719492	1	1	0.570280508	unphased	0.92644514	0.92644514	1	0.00125	0.99625	0.0025	0	2	8.56E-06	1	1	1	NA	NA	NA	NA
1351289	1206591082	PD9774b	16	48138874	G	T	ABCC12	CCDS10730.1	r.?	-	-	intronic	45	0	0	41	6	14.63414634	0	0	NA	0	0	NA	1.570280508	1	0	0.429719492	1	1	0.570280508	unphased	0.881252694	0.881252694	1	0.00125	0.99875	0	0	2	6.05E-08	1	1	1	NA	NA	NA	NA
1351289	1206591154	PD9774b	16	49160362	G	T	-	-	-	-	-	-	34	0	0	36	9	25	0	0	NA	0	0	NA	1.570280508	1	0	0.429719492	1	1	0.570280508	unphased	1.505473353	1.505473353	1	0	0.9925	0.0075	0	2	1.63E-13	1	1	1	NA	NA	NA	NA
1351289	1206591241	PD9774b	16	50293185	C	T	-	-	-	-	-	-	28	0	0	36	4	11.11111111	0	0	NA	0	0	NA	1.570280508	1	0	0.429719492	1	1	0.570280508	unphased	0.669099268	1.173280971	0.570280508	0	1	0	0	2	3.24E-05	1	1	1	NA	NA	NA	NA
1351289	1206591596	PD9774b	16	54434748	A	T	ENSG00000227093	ENST00000449142	r.?	-	-	intronic	38	0	0	45	6	13.33333333	0	0	NA	0	0	NA	1.570280508	1	0	0.429719492	1	1	0.570280508	unphased	0.802919121	0.802919121	1	0.00375	0.99625	0	0	2	1.08E-07	1	1	1	NA	NA	NA	NA
1351289	1206591706	PD9774b	16	55673880	G	T	-	-	-	-	-	-	34	0	0	48	8	16.66666667	0	0	NA	0	0	NA	1.570280508	1	0	0.429719492	1	1	0.570280508	unphased	1.003648902	1.003648902	1	0	1	0	0	2	1.23E-10	1	1	1	NA	NA	NA	NA
1351289	1206592106	PD9774b	16	60179899	G	T	-	-	-	-	-	-	32	0	0	48	6	12.5	0	0	NA	0	0	NA	1.570280508	1	0	0.429719492	1	1	0.570280508	unphased	0.752736676	0.752736676	1	0.00375	0.99625	0	0	2	1.60E-07	1	1	1	NA	NA	NA	NA
1351289	1206592161	PD9774b	16	60839878	A	T	-	-	-	-	-	-	39	0	0	43	5	11.62790698	0	0	NA	0	0	NA	1.570280508	1	0	0.429719492	1	1	0.570280508	unphased	0.700220164	1.227852179	0.570280508	0.00125	0.995	0.00375	0	2	2.57E-06	1	1	1	NA	NA	NA	NA
1351289	1206592259	PD9774b	16	62767047	G	T	-	-	-	-	-	-	33	0	0	56	10	17.85714286	0	0	NA	0	0	NA	1.570280508	1	0	0.429719492	1	1	0.570280508	unphased	1.075338109	1.075338109	1	0	1	0	0	2	2.82E-13	1	1	1	NA	NA	NA	NA
1351289	1206592537	PD9774b	16	66400605	G	T	CDH5	CCDS10804.1	r.73g>u	c.?	p.?	5'UTR variant	29	0	0	34	6	17.64705882	0	0	NA	0	0	NA	1.570280508	1	0	0.429719492	1	1	0.570280508	unphased	1.062687073	1.062687073	1	0	1	0	0	2	1.86E-08	1	1	1	NA	NA	NA	NA
1351289	1206592621	PD9774b	16	67772901	C	T	RANBP10	CCDS32469.1	r.?	-	-	intronic	36	0	0	49	8	16.32653061	0	0	NA	0	0	NA	1.570280508	1	0	0.429719492	1	1	0.570280508	unphased	0.983166271	0.983166271	1	0	0.99875	0.00125	0	2	1.47E-10	1	1	1	NA	NA	NA	NA
1351289	1206592762	PD9774b	16	69149119	C	T	HAS3	CCDS10871.1	r.1768c>u	c.1612C>T	p.R538*	nonsense	29	0	0	41	6	14.63414634	0	0	NA	0	0	NA	1.570280508	1	0	0.429719492	1	1	0.570280508	unphased	0.881252694	0.881252694	1	0	1	0	0	2	6.05E-08	1	1	1	NA	NA	NA	NA
1351289	1206593077	PD9774b	16	71133644	C	T	HYDIN2	CCDS42189.1	r.?	-	-	intronic	65	0	0	119	7	5.882352941	0	0	NA	0	0	NA	1.570280508	1	0	0.429719492	1	1	0.570280508	unphased	0.354229024	0.621148749	0.570280508	0.01	0.99	0	0	2	2.68E-06	1	1	1	NA	NA	NA	NA
1351289	1206593170	PD9774b	16	72059107	C	T	DHODH	CCDS42192.1	r.?	-	-	downstream	33	0	0	47	10	21.27659574	0	0	NA	0	0	NA	1.570280508	1	0	0.429719492	1	1	0.570280508	unphased	1.281253917	1.281253917	1	0	0.99875	0.00125	0	2	4.27E-14	1	1	1	NA	NA	NA	NA
1351289	1206593278	PD9774b	16	73985609	G	T	-	-	-	-	-	-	53	0	0	56	8	14.28571429	0	0	NA	0	0	NA	1.570280508	1	0	0.429719492	1	1	0.570280508	unphased	0.860270487	0.860270487	1	0.0025	0.99625	0.00125	0	2	4.48E-10	1	1	1	NA	NA	NA	NA
1351289	1206593297	PD9774b	16	74193992	C	T	-	-	-	-	-	-	32	0	0	50	7	14	0	0	NA	0	0	NA	1.570280508	1	0	0.429719492	1	1	0.570280508	unphased	0.843065078	0.843065078	1	0.00125	0.9975	0.00125	0	2	6.46E-09	1	1	1	NA	NA	NA	NA
1351289	1206593449	PD9774b	16	75097449	C	T	ZNRF1	CCDS10912.1	r.?	-	-	intronic	39	0	0	57	5	8.771929825	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.565930956	0.565930956	1	0.005	0.995	0	0	2	1.05E-05	1	1	1	NA	NA	NA	NA
1351289	1206593541	PD9774b	16	76230160	G	T	-	-	-	-	-	-	36	0	0	54	8	14.81481481	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.955794504	0.955794504	1	0	1	0	0	2	3.31E-10	1	1	1	NA	NA	NA	NA
1351289	1206593590	PD9774b	16	76826013	G	T	-	-	-	-	-	-	33	0	0	57	4	7.01754386	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.452744765	0.452744765	1	0.01125	0.98875	0	0	2	0.000199821	1	1	1	NA	NA	NA	NA
1351289	1206593601	PD9774b	16	76990592	C	T	-	-	-	-	-	-	32	0	0	49	7	14.28571429	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.921658986	0.921658986	1	0.0025	0.9975	0	0	2	5.58E-09	1	1	1	NA	NA	NA	NA
1351289	1206593784	PD9774b	16	78927279	C	T	WWOX	CCDS42196.1	r.?	-	-	intronic	33	0	0	55	7	12.72727273	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.82111437	0.82111437	1	0.0025	0.9975	0	0	2	1.28E-08	1	1	1	NA	NA	NA	NA
1351289	1206593923	PD9774b	16	80296035	A	T	-	-	-	-	-	-	20	0	0	42	6	14.28571429	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.921658986	0.921658986	1	0.00125	0.99625	0.0025	0	2	7.02E-08	1	1	1	NA	NA	NA	NA
1351289	1206593947	PD9774b	16	80624903	A	T	-	-	-	-	-	-	30	0	0	48	5	10.41666667	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.672043011	0.672043011	1	0.0025	0.9975	0	0	2	4.47E-06	1	1	1	NA	NA	NA	NA
1351289	1206593962	PD9774b	16	80762651	C	T	CDYL2	CCDS32493.1	r.?	-	-	intronic	31	0	0	43	6	13.95348837	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.900225056	0.900225056	1	0.00125	0.99625	0.0025	0	2	8.13E-08	1	1	1	NA	NA	NA	NA
1351289	1206593964	PD9774b	16	80793258	G	T	CDYL2	CCDS32493.1	r.?	-	-	intronic	34	0	0	26	5	19.23076923	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.240694789	1.240694789	1	0.0025	0.995	0.0025	0	2	1.88E-07	1	1	1	NA	NA	NA	NA
1351289	1206594065	PD9774b	16	81726827	C	T	ENSG00000153815	ENST00000398040	r.?	-	-	intronic	31	0	0	41	9	21.95121951	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.41620771	1.41620771	1	0.00125	0.9925	0.00625	0	2	5.92E-13	1	1	1	NA	NA	NA	NA
1351289	1206594205	PD9774b	16	83242703	C	T	CDH13	ENST00000268613	r.?	-	-	intronic	29	0	0	53	6	11.32075472	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.730371272	0.730371272	1	0	1	0	0	2	2.93E-07	1	1	1	NA	NA	NA	NA
1351289	1206594316	PD9774b	16	84230785	G	T	ADAD2	CCDS10944.1	r.?	-	-	downstream	12	0	0	31	5	16.12903226	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.040582726	1.040582726	1	0.00125	0.99875	0	0	2	4.76E-07	1	1	1	NA	NA	NA	NA
1351289	1206594373	PD9774b	16	84781551	G	T	USP10	CCDS45537.1	r.?	-	-	intronic	24	0	0	43	6	13.95348837	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.900225056	0.900225056	1	0.00125	0.99875	0	0	2	8.13E-08	1	1	1	NA	NA	NA	NA
1351289	1206594514	PD9774b	16	86032299	A	T	-	-	-	-	-	-	32	0	0	48	6	12.5	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.806451613	0.806451613	1	0.00125	0.99875	0	0	2	1.60E-07	1	1	1	NA	NA	NA	NA
1351289	1206594530	PD9774b	16	86199915	G	T	-	-	-	-	-	-	30	0	0	62	9	14.51612903	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.936524454	0.936524454	1	0.00125	0.99875	0	0	2	3.12E-11	1	1	1	NA	NA	NA	NA
1351289	1206594533	PD9774b	16	86210456	C	T	-	-	-	-	-	-	23	0	0	52	9	17.30769231	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.11662531	1.11662531	1	0.00125	0.9975	0.00125	0	2	5.92E-12	1	1	1	NA	NA	NA	NA
1351289	1206594682	PD9774b	16	87624864	G	T	-	-	-	-	-	-	27	0	0	46	5	10.86956522	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.701262272	0.701262272	1	0.00125	0.99875	0	0	2	3.61E-06	1	1	1	NA	NA	NA	NA
1351289	1206594683	PD9774b	16	87624865	A	T	-	-	-	-	-	-	26	0	0	42	5	11.9047619	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.768049155	0.768049155	1	0	1	0	0	2	2.28E-06	1	1	1	NA	NA	NA	NA
1351289	1206594686	PD9774b	16	87693616	C	T	JPH3	CCDS10962.1	r.?	-	-	intronic	32	0	0	47	5	10.63829787	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.686341798	0.686341798	1	0.00375	0.995	0.00125	0	2	4.02E-06	1	1	1	NA	NA	NA	NA
1351289	1206594931	PD9774b	16	89654615	C	T	CPNE7	CCDS10980.1	r.?	-	-	intronic	22	0	0	32	5	15.625	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.008064516	1.008064516	1	0.0025	0.9975	0	0	2	5.62E-07	1	1	1	NA	NA	NA	NA
1351289	1206595767	PD9774b	17	4908717	C	T	KIF1C	CCDS11065.1	r.?	-	-	intronic	23	0	0	46	10	21.73913043	0	0	NA	0	0	NA	0.78531958	0	0	0.21468042	1	0	0.78531958	unphased	1.138463583	1.138463583	1	0	0.99875	0.00125	0	2	3.38E-14	1	1	1	NA	NA	NA	NA
1351289	1206595842	PD9774b	17	5675831	C	T	-	-	-	-	-	-	31	0	0	40	9	22.5	0	0	NA	0	0	NA	0.78531958	0	0	0.21468042	1	0	0.78531958	unphased	1.178309809	1.178309809	1	0.00125	0.99625	0.0025	0	2	4.64E-13	1	1	1	NA	NA	NA	NA
1351289	1206596051	PD9774b	17	8244252	A	T	ODF4	CCDS11140.1	r.?	-	-	intronic	35	0	0	43	7	16.27906977	0	0	NA	0	0	NA	0.78531958	0	0	0.21468042	1	0	0.78531958	unphased	0.852523893	1.085575751	0.78531958	0	1	0	0	2	2.15E-09	1	1	1	NA	NA	NA	NA
1351289	1206596125	PD9774b	17	9010223	C	T	NTN1	CCDS11148.1	r.?	-	-	intronic	40	0	0	52	6	11.53846154	0	0	NA	0	0	NA	0.78531958	0	0	0.21468042	1	0	0.78531958	unphased	0.60426144	0.769446549	0.78531958	0	1	0	0	2	2.61E-07	1	1	1	NA	NA	NA	NA
1351289	1206596226	PD9774b	17	10165174	C	T	-	-	-	-	-	-	30	0	0	46	8	17.39130435	0	0	NA	0	0	NA	0.78531958	0	0	0.21468042	1	0	0.78531958	unphased	0.910770867	0.910770867	1	0	1	0	0	2	8.61E-11	1	1	1	NA	NA	NA	NA
1351289	1206596297	PD9774b	17	10955544	G	T	-	-	-	-	-	-	44	0	0	62	7	11.29032258	0	0	NA	0	0	NA	0.78531958	0	0	0.21468042	1	0	0.78531958	unphased	0.591266571	0.752899311	0.78531958	0	0.99875	0.00125	0	2	3.02E-08	1	1	1	NA	NA	NA	NA
1351289	1206596364	PD9774b	17	11817942	G	T	DNAH9	CCDS11160.1	r.?	-	-	intronic	37	0	0	57	10	17.54385965	0	0	NA	0	0	NA	0.78531958	0	0	0.21468042	1	0	0.78531958	unphased	0.918760085	0.918760085	1	0	1	0	0	2	3.40E-13	1	1	1	NA	NA	NA	NA
1351289	1206596602	PD9774b	17	14444054	A	T	-	-	-	-	-	-	38	0	0	40	3	7.5	0	0	NA	0	0	NA	0.78531958	0	0	0.21468042	1	0	0.78531958	unphased	0.392769936	0.500140257	0.78531958	0.0025	0.9975	0	0	2	0.001075403	1	1	1	NA	NA	NA	NA
1351289	1206596979	PD9774b	17	17763746	C	T	TOM1L2	CCDS42270.1	r.?	-	-	intronic	24	0	0	47	8	17.0212766	0	0	NA	0	0	NA	0.78531958	0	0	0.21468042	1	0	0.78531958	unphased	0.891392763	0.891392763	1	0.00125	0.99875	0	0	2	1.03E-10	1	1	1	NA	NA	NA	NA
1351289	1206597036	PD9774b	17	18390930	C	T	LGALS9C	CCDS32587.1	r.?	-	-	intronic	4	0	0	24	6	25	0	0	NA	0	0	NA	0.78531958	0	0	0.21468042	1	0	0.78531958	unphased	1.309233121	1.309233121	1	0	0.9975	0.0025	0	2	1.95E-09	1	1	1	NA	NA	NA	NA
1351289	1206597115	PD9774b	17	19100019	C	T	-	-	-	-	-	-	17	0	0	21	5	23.80952381	0	0	NA	0	0	NA	0.78531958	0	0	0.21468042	1	0	0.78531958	unphased	1.246888686	1.246888686	1	0	0.99875	0.00125	0	2	5.95E-08	1	1	1	NA	NA	NA	NA
1351289	1206597635	PD9774b	17	21330574	G	T	-	-	-	-	-	-	66	0	0	106	7	6.603773585	0	0	NA	0	0	NA	1.337843266	1	0	0.662156734	2	0	0.337843266	unphased	0.382322577	1.131656646	0.337843266	0	0.99875	0.00125	0	2	1.24E-06	1	1	1	NA	NA	NA	NA
1351289	1206600454	PD9774b	17	28859265	C	T	-	-	-	-	-	-	36	0	0	50	17	34	0	0	NA	0	0	NA	1.337843266	1	0	0.662156734	2	0	0.337843266	unphased	1.968415098	1.471334608	1.337843266	0	0.98375	0.01625	0	2	6.43E-27	1	1	1	NA	NA	NA	NA
1351289	1206600786	PD9774b	17	32425076	A	T	ACCN1	CCDS42296.1	r.?	-	-	intronic	31	0	0	61	6	9.836065574	0	0	NA	0	0	NA	1.337843266	1	0	0.662156734	2	0	0.337843266	unphased	0.569454705	0.569454705	1	0.005	0.995	0	0	2	6.85E-07	1	1	1	NA	NA	NA	NA
1351289	1206600906	PD9774b	17	33916632	C	T	AP2B1	CCDS32621.1	r.?	-	-	intronic	36	0	0	46	12	26.08695652	0	0	NA	0	0	NA	1.337843266	1	0	0.662156734	2	0	0.337843266	unphased	1.510292914	1.510292914	1	0	0.98375	0.01625	0	2	8.12E-18	1	1	1	NA	NA	NA	NA
1351289	1206601128	PD9774b	17	36279453	C	T	TBC1D3	CCDS45657.1	r.?	-	-	upstream	41	1	2.43902439	51	12	23.52941176	0	0	NA	0	0	NA	1.337843266	1	0	0.662156734	2	0	0.337843266	unphased	1.362224981	1.362224981	1	0	0.995	0.005	0	2	3.24E-17	0.18577148	1	1	NA	NA	NA	NA
1351289	1206601303	PD9774b	17	37568975	G	T	MED1	CCDS11336.1	r.?	-	-	intronic	30	0	0	43	7	16.27906977	0	0	NA	0	0	NA	1.337843266	1	0	0.662156734	2	0	0.337843266	unphased	0.942469609	0.942469609	1	0	1	0	0	2	2.15E-09	1	1	1	NA	NA	NA	NA
1351289	1206602513	PD9774b	17	48353633	C	T	TMEM92	CCDS11562.1	r.?	-	-	intronic	34	0	0	44	12	27.27272727	0	0	NA	0	0	NA	1.359934568	1	0	0.640065432	2	0	0.359934568	unphased	1.584967492	1.584967492	1	0	0.9825	0.0175	0	2	4.44E-18	1	1	1	NA	NA	NA	NA
1351289	1206602637	PD9774b	17	49874249	C	T	CA10	CCDS32684.1	r.?	-	-	intronic	26	0	0	56	12	21.42857143	0	0	NA	0	0	NA	1.359934568	1	0	0.640065432	2	0	0.359934568	unphased	1.245331601	1.245331601	1	0	0.9975	0.0025	0	2	1.11E-16	1	1	1	NA	NA	NA	NA
1351289	1206602750	PD9774b	17	51323382	G	T	-	-	-	-	-	-	40	0	0	44	9	20.45454545	0	0	NA	0	0	NA	1.359934568	1	0	0.640065432	2	0	0.359934568	unphased	1.188725619	1.188725619	1	0.00125	0.99875	0	0	2	1.18E-12	1	1	1	NA	NA	NA	NA
1351289	1206602895	PD9774b	17	53301893	A	T	-	-	-	-	-	-	30	0	0	41	3	7.317073171	0	0	NA	0	0	NA	1.359934568	1	0	0.640065432	2	0	0.359934568	unphased	0.425235181	1.181423566	0.359934568	0.00125	0.99375	0.005	0	2	0.001155993	1	1	1	NA	NA	NA	NA
1351289	1206602937	PD9774b	17	53708735	G	T	-	-	-	-	-	-	34	0	0	61	6	9.836065574	0	0	NA	0	0	NA	1.359934568	1	0	0.640065432	2	0	0.359934568	unphased	0.57162762	0.57162762	1	0.005	0.995	0	0	2	6.85E-07	1	1	1	NA	NA	NA	NA
1351289	1206603061	PD9774b	17	55686323	C	T	MSI2	CCDS11597.1	r.?	-	-	intronic	21	0	0	56	8	14.28571429	0	0	NA	0	0	NA	1.359934568	1	0	0.640065432	2	0	0.359934568	unphased	0.830221067	0.830221067	1	0	1	0	0	2	4.48E-10	1	1	1	NA	NA	NA	NA
1351289	1206603519	PD9774b	17	60593942	C	T	TLK2	CCDS11633.1	r.?	-	-	intronic	30	0	0	35	13	37.14285714	0	0	NA	0	0	NA	2	2	0	1	NA	NA	NA	unphased	2.396313364	1.198156682	2	0	0.99875	0.00125	0	2	1.63E-21	1	1	1	NA	NA	NA	NA
1351289	1206603828	PD9774b	17	63476320	C	T	-	-	-	-	-	-	37	0	0	37	11	29.72972973	0	0	NA	0	0	NA	2	2	0	1	NA	NA	NA	unphased	1.918047079	0.95902354	2	0.00125	0.99875	0	0	2	3.70E-17	1	1	1	NA	NA	NA	NA
1351289	1206604368	PD9774b	17	68400685	C	T	-	-	-	-	-	-	29	0	0	64	17	26.5625	0	0	NA	0	0	NA	2	2	0	1	NA	NA	NA	unphased	1.713709677	0.856854839	2	0.00125	0.99875	0	0	2	8.43E-25	1	1	1	NA	NA	NA	NA
1351289	1206604372	PD9774b	17	68510347	G	T	-	-	-	-	-	-	42	0	0	61	17	27.86885246	0	0	NA	0	0	NA	2	2	0	1	NA	NA	NA	unphased	1.797990481	0.898995241	2	0.00125	0.99875	0	0	2	3.33E-25	1	1	1	NA	NA	NA	NA
1351289	1206604458	PD9774b	17	69150764	G	T	-	-	-	-	-	-	35	0	0	58	15	25.86206897	0	0	NA	0	0	NA	2	2	0	1	NA	NA	NA	unphased	1.668520578	0.834260289	2	0	1	0	0	2	7.42E-22	1	1	1	NA	NA	NA	NA
1351289	1206604729	PD9774b	17	71539441	C	T	SDK2	CCDS45769.1	r.?	-	-	intronic	28	0	0	47	20	42.55319149	0	0	NA	0	0	NA	2	2	0	1	NA	NA	NA	unphased	2.745367193	1.372683596	2	0	0.9925	0.0075	0	2	8.18E-34	1	1	1	NA	NA	NA	NA
1351289	1206605028	PD9774b	17	74247525	A	T	-	-	-	-	-	-	39	0	0	52	12	23.07692308	0	0	NA	0	0	NA	2	2	0	1	NA	NA	NA	unphased	1.488833747	1.488833747	1	0	0.99125	0.00875	0	2	4.19E-17	1	1	1	NA	NA	NA	NA
1351289	1206605087	PD9774b	17	74620351	G	T	ST6GALNAC1	CCDS11748.1	r.?	-	-	downstream	30	0	0	40	8	20	0	0	NA	0	0	NA	2	2	0	1	NA	NA	NA	unphased	1.290322581	1.290322581	1	0	0.995	0.005	0	2	2.61E-11	1	1	1	NA	NA	NA	NA
1351289	1206605382	PD9774b	17	77310548	C	T	ENSG00000167281	CCDS45805.1	r.?	-	-	intronic	26	0	0	36	7	19.44444444	0	0	NA	0	0	NA	2	2	0	1	NA	NA	NA	unphased	1.254480287	1.254480287	1	0	0.9975	0.0025	0	2	5.74E-10	1	1	1	NA	NA	NA	NA
1351289	1206605586	PD9774b	17	78900377	A	T	RPTOR	CCDS11773.1	r.?	-	-	intronic	45	0	0	70	8	11.42857143	0	0	NA	0	0	NA	2	2	0	1	NA	NA	NA	unphased	0.737327189	0.737327189	1	0.0025	0.9975	0	0	2	2.80E-09	1	1	1	NA	NA	NA	NA
1351289	1206606030	PD9774b	18	544793	G	T	-	-	-	-	-	-	33	0	0	43	11	25.58139535	0	0	NA	0	0	NA	1.612613399	1	0	0.387386601	1	1	0.612613399	unphased	1.551313705	1.551313705	1	0	0.995	0.005	0	2	2.42E-16	1	1	1	NA	NA	NA	NA
1351289	1206606124	PD9774b	18	1728164	C	T	-	-	-	-	-	-	36	0	0	50	5	10	0	0	NA	0	0	NA	1.612613399	1	0	0.387386601	1	1	0.612613399	unphased	0.60642263	0.989894493	0.612613399	0	0.99875	0.00125	0	2	5.49E-06	1	1	1	NA	NA	NA	NA
1351289	1206606202	PD9774b	18	2591600	A	T	NDC80	CCDS11827.1	r.?	-	-	intronic	32	0	0	40	6	15	0	0	NA	0	0	NA	1.612613399	1	0	0.387386601	1	1	0.612613399	unphased	0.909633945	0.909633945	1	0.00125	0.99875	0	0	2	5.18E-08	1	1	1	NA	NA	NA	NA
1351289	1206606393	PD9774b	18	4762562	C	T	-	-	-	-	-	-	35	0	0	42	5	11.9047619	0	0	NA	0	0	NA	1.612613399	1	0	0.387386601	1	1	0.612613399	unphased	0.721931703	1.178445825	0.612613399	0.00125	0.9975	0.00125	0	2	2.28E-06	1	1	1	NA	NA	NA	NA
1351289	1206606410	PD9774b	18	4908587	C	T	-	-	-	-	-	-	33	0	0	45	10	22.22222222	0	0	NA	0	0	NA	1.612613399	1	0	0.387386601	1	1	0.612613399	unphased	1.347605845	1.347605845	1	0	0.9975	0.0025	0	2	2.66E-14	1	1	1	NA	NA	NA	NA
1351289	1206606600	PD9774b	18	7416632	C	T	-	-	-	-	-	-	34	0	0	42	5	11.9047619	0	0	NA	0	0	NA	1.612613399	1	0	0.387386601	1	1	0.612613399	unphased	0.721931703	1.178445825	0.612613399	0	1	0	0	2	2.28E-06	1	1	1	NA	NA	NA	NA
1351289	1206606605	PD9774b	18	7478831	G	T	-	-	-	-	-	-	29	0	0	56	9	16.07142857	0	0	NA	0	0	NA	1.612613399	1	0	0.387386601	1	1	0.612613399	unphased	0.974607799	0.974607799	1	0	1	0	0	2	1.20E-11	1	1	1	NA	NA	NA	NA
1351289	1206606613	PD9774b	18	7589108	A	T	PTPRM	CCDS11840.1	r.?	-	-	intronic	30	0	0	59	12	20.33898305	0	0	NA	0	0	NA	1.612613399	1	0	0.387386601	1	1	0.612613399	unphased	1.23340196	1.23340196	1	0	0.99875	0.00125	0	2	2.20E-16	1	1	1	NA	NA	NA	NA
1351289	1206606617	PD9774b	18	7660448	A	T	PTPRM	CCDS11840.1	r.?	-	-	intronic	30	0	0	38	4	10.52631579	0	0	NA	0	0	NA	1.612613399	1	0	0.387386601	1	1	0.612613399	unphased	0.638339611	1.041994203	0.612613399	0.00375	0.99625	0	0	2	4.03E-05	1	1	1	NA	NA	NA	NA
1351289	1206606619	PD9774b	18	7677752	C	T	PTPRM	CCDS11840.1	r.?	-	-	intronic	30	0	0	40	6	15	0	0	NA	0	0	NA	1.612613399	1	0	0.387386601	1	1	0.612613399	unphased	0.909633945	0.909633945	1	0.00125	0.99875	0	0	2	5.18E-08	1	1	1	NA	NA	NA	NA
1351289	1206606841	PD9774b	18	10603424	G	T	-	-	-	-	-	-	30	0	0	55	11	20	0	0	NA	0	0	NA	1.612613399	1	0	0.387386601	1	1	0.612613399	unphased	1.212845261	1.212845261	1	0	0.99875	0.00125	0	2	4.77E-15	1	1	1	NA	NA	NA	NA
1351289	1206606852	PD9774b	18	10714647	G	T	-	-	-	-	-	-	27	0	0	55	10	18.18181818	0	0	NA	0	0	NA	1.612613399	1	0	0.387386601	1	1	0.612613399	unphased	1.1025866	1.1025866	1	0.00125	0.99875	0	0	2	2.33E-13	1	1	1	NA	NA	NA	NA
1351289	1206606870	PD9774b	18	10910807	A	T	-	-	-	-	-	-	29	0	0	40	6	15	0	0	NA	0	0	NA	1.612613399	1	0	0.387386601	1	1	0.612613399	unphased	0.909633945	0.909633945	1	0	0.99875	0.00125	0	2	5.18E-08	1	1	1	NA	NA	NA	NA
1351289	1206606908	PD9774b	18	11230617	C	T	-	-	-	-	-	-	32	0	0	35	4	11.42857143	0	0	NA	0	0	NA	1.612613399	1	0	0.387386601	1	1	0.612613399	unphased	0.693054435	1.131307992	0.612613399	0.0025	0.9975	0	0	2	2.89E-05	1	1	1	NA	NA	NA	NA
1351289	1206607656	PD9774b	18	15067795	G	T	-	-	-	-	-	-	28	0	0	37	6	16.21621622	0	0	NA	0	0	NA	1.612613399	1	0	0.387386601	1	1	0.612613399	unphased	0.983388049	0.983388049	1	0	0.9975	0.0025	0	2	3.18E-08	1	1	1	NA	NA	NA	NA
1351289	1206609004	PD9774b	18	18668964	A	T	ROCK1	CCDS11870.2	r.?	-	-	intronic	36	0	0	55	5	9.090909091	0	0	NA	0	0	NA	1.612613399	1	0	0.387386601	1	1	0.612613399	unphased	0.5512933	0.899904084	0.612613399	0.00125	0.9975	0.00125	0	2	8.83E-06	1	1	1	NA	NA	NA	NA
1351289	1206609023	PD9774b	18	18908367	A	T	GREB1L	CCDS45836.1	r.?	-	-	intronic	38	0	0	57	11	19.29824561	0	0	NA	0	0	NA	1.612613399	1	0	0.387386601	1	1	0.612613399	unphased	1.170289286	1.170289286	1	0	1	0	0	2	7.29E-15	1	1	1	NA	NA	NA	NA
1351289	1206609358	PD9774b	18	22289936	G	T	-	-	-	-	-	-	44	0	0	45	7	15.55555556	0	0	NA	0	0	NA	0.766536695	0	0	0.233463305	1	0	0.766536695	unphased	0.81171216	1.058934511	0.766536695	0	0.9975	0.0025	0	2	3.00E-09	1	1	1	NA	NA	NA	NA
1351289	1206609409	PD9774b	18	22899332	C	T	ZNF521	CCDS32806.1	r.?	-	-	intronic	35	0	0	53	10	18.86792453	0	0	NA	0	0	NA	0.766536695	0	0	0.233463305	1	0	0.766536695	unphased	0.984556528	0.984556528	1	0.00125	0.99875	0	0	2	1.57E-13	1	1	1	NA	NA	NA	NA
1351289	1206609592	PD9774b	18	25272399	G	T	-	-	-	-	-	-	33	0	0	54	9	16.66666667	0	0	NA	0	0	NA	0.766536695	0	0	0.233463305	1	0	0.766536695	unphased	0.8696916	0.8696916	1	0.00125	0.99875	0	0	2	8.48E-12	1	1	1	NA	NA	NA	NA
1351289	1206609645	PD9774b	18	26071591	C	T	-	-	-	-	-	-	31	0	0	43	13	30.23255814	0	0	NA	0	0	NA	0.766536695	0	0	0.233463305	1	0	0.766536695	unphased	1.577580111	1.577580111	1	0	0.9775	0.0225	0	2	3.88E-20	1	1	1	NA	NA	NA	NA
1351289	1206609866	PD9774b	18	28944178	A	T	-	-	-	-	-	-	40	0	0	45	4	8.888888889	2	0	0	2	0	0	0.766536695	0	0	0.233463305	1	0	0.766536695	unphased	0.46383552	0.605105435	0.766536695	0.00375	0.99625	0	0	2	7.91E-05	1	1	1	NA	NA	NA	NA
1351289	1206609999	PD9774b	18	30916744	A	T	C18orf34	CCDS42424.1	r.?	-	-	intronic	36	0	0	48	6	12.5	0	0	NA	0	0	NA	1.731976103	1	0	0.268023897	1	1	0.731976103	unphased	0.772948626	1.055975219	0.731976103	0.0025	0.9975	0	0	2	1.60E-07	1	1	1	NA	NA	NA	NA
1351289	1206610132	PD9774b	18	33097008	A	T	-	-	-	-	-	-	33	0	0	49	5	10.20408163	0	0	NA	0	0	NA	1.731976103	1	0	0.268023897	1	1	0.731976103	unphased	0.63097847	0.862020587	0.731976103	0.0075	0.9925	0	0	2	4.96E-06	1	1	1	NA	NA	NA	NA
1351289	1206610291	PD9774b	18	35262621	C	T	-	-	-	-	-	-	35	0	0	61	6	9.836065574	0	0	NA	0	0	NA	1.731976103	1	0	0.268023897	1	1	0.731976103	unphased	0.60822187	0.83093132	0.731976103	0	1	0	0	2	6.85E-07	1	1	1	NA	NA	NA	NA
1351289	1206610377	PD9774b	18	36294442	G	T	-	-	-	-	-	-	32	0	0	50	10	20	293	2	0.682593857	205	26	12.68292683	1.731976103	1	0	0.268023897	1	1	0.731976103	unphased	1.236717801	1.236717801	1	0	0.99875	0.00125	0	2	8.36E-14	1	3.80E-28	0.430787164	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206610451	PD9774b	18	37349802	C	T	AC105201.1	ENST00000510201	r.?	-	-	intronic	32	0	0	61	10	16.39344262	0	0	NA	0	0	NA	1.731976103	1	0	0.268023897	1	1	0.731976103	unphased	1.013703116	1.013703116	1	0	1	0	0	2	6.98E-13	1	1	1	NA	NA	NA	NA
1351289	1206610975	PD9774b	18	44830944	C	T	-	-	-	-	-	-	28	0	0	46	6	13.04347826	0	0	NA	0	0	NA	1.731976103	1	0	0.268023897	1	1	0.731976103	unphased	0.806555088	1.101887185	0.731976103	0	1	0	0	2	1.23E-07	1	1	1	NA	NA	NA	NA
1351289	1206611069	PD9774b	18	45907347	G	T	-	-	-	-	-	-	24	0	0	60	4	6.666666667	0	0	NA	0	0	NA	1.731976103	1	0	0.268023897	1	1	0.731976103	unphased	0.412239267	0.563186783	0.731976103	0.01125	0.98875	0	0	2	0.000243755	1	1	1	NA	NA	NA	NA
1351289	1206611104	PD9774b	18	46288354	G	T	KIAA0427	CCDS45864.1	r.?	-	-	intronic	28	0	0	55	9	16.36363636	0	0	NA	0	0	NA	1.731976103	1	0	0.268023897	1	1	0.731976103	unphased	1.011860019	1.011860019	1	0.00125	0.99625	0.0025	0	2	1.01E-11	1	1	1	NA	NA	NA	NA
1351289	1206611214	PD9774b	18	47412275	C	T	MYO5B	CCDS42436.1	r.?	-	-	intronic	40	0	0	57	7	12.28070175	168	1	0.595238095	94	4	4.255319149	1.731976103	1	0	0.268023897	1	1	0.731976103	unphased	0.759388124	1.037449338	0.731976103	0.00125	0.99875	0	0	2	1.66E-08	1	0.001332441	0.569198144	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206611242	PD9774b	18	47747078	C	T	-	-	-	-	-	-	23	0	0	45	11	24.44444444	0	0	NA	0	0	NA	1.731976103	1	0	0.268023897	1	1	0.731976103	unphased	1.511543979	1.511543979	1	0	0.9875	0.0125	0	2	4.24E-16	1	1	1	NA	NA	NA	NA
1351289	1206611502	PD9774b	18	51329127	C	T	-	-	-	-	-	-	25	0	0	49	8	16.32653061	0	0	NA	0	0	NA	1.731976103	1	0	0.268023897	1	1	0.731976103	unphased	1.009565552	1.009565552	1	0	1	0	0	2	1.47E-10	1	1	1	NA	NA	NA	NA
1351289	1206611503	PD9774b	18	51329128	C	T	-	-	-	-	-	-	25	0	0	51	9	17.64705882	0	0	NA	0	0	NA	1.731976103	1	0	0.268023897	1	1	0.731976103	unphased	1.091221589	1.091221589	1	0	1	0	0	2	4.92E-12	1	1	1	NA	NA	NA	NA
1351289	1206611575	PD9774b	18	52367103	A	T	-	-	-	-	-	-	42	0	0	53	6	11.32075472	0	0	NA	0	0	NA	1.731976103	1	0	0.268023897	1	1	0.731976103	unphased	0.700028944	0.956354915	0.731976103	0	1	0	0	2	2.93E-07	1	1	1	NA	NA	NA	NA
1351289	1206611704	PD9774b	18	54228054	C	T	-	-	-	-	-	-	29	0	0	52	5	9.615384615	0	0	NA	0	0	NA	1.731976103	1	0	0.268023897	1	1	0.731976103	unphased	0.594575866	0.81228863	0.731976103	0.0025	0.9975	0	0	2	6.68E-06	1	1	1	NA	NA	NA	NA
1351289	1206611787	PD9774b	18	55130476	C	T	ONECUT2	CCDS42440.1	r.?	-	-	intronic	34	0	0	55	7	12.72727273	0	0	NA	0	0	NA	1.731976103	1	0	0.268023897	1	1	0.731976103	unphased	0.787002237	1.075174768	0.731976103	0.00125	0.9975	0.00125	0	2	1.28E-08	1	1	1	NA	NA	NA	NA
1351289	1206611943	PD9774b	18	57006443	A	T	LMAN1	CCDS11974.1	r.?	-	-	intronic	38	0	0	55	5	9.090909091	0	0	NA	0	0	NA	1.731976103	1	0	0.268023897	1	1	0.731976103	unphased	0.562144455	0.767981977	0.731976103	0.00375	0.99625	0	0	2	8.83E-06	1	1	1	NA	NA	NA	NA
1351289	1206611981	PD9774b	18	57412226	C	T	-	-	-	-	-	-	35	0	0	55	11	20	0	0	NA	0	0	NA	1.731976103	1	0	0.268023897	1	1	0.731976103	unphased	1.236717801	1.236717801	1	0	0.99625	0.00375	0	2	4.77E-15	1	1	1	NA	NA	NA	NA
1351289	1206612033	PD9774b	18	58060894	G	T	-	-	-	-	-	-	33	0	0	46	7	15.2173913	0	0	NA	0	0	NA	1.731976103	1	0	0.268023897	1	1	0.731976103	unphased	0.940980936	0.940980936	1	0	0.99875	0.00125	0	2	3.53E-09	1	1	1	NA	NA	NA	NA
1351289	1206612035	PD9774b	18	58111129	A	T	-	-	-	-	-	-	25	0	0	49	4	8.163265306	0	0	NA	0	0	NA	1.731976103	1	0	0.268023897	1	1	0.731976103	unphased	0.504782776	0.689616469	0.731976103	0.0025	0.99625	0.00125	0	2	0.000110643	1	1	1	NA	NA	NA	NA
1351289	1206612096	PD9774b	18	59066496	A	T	-	-	-	-	-	-	40	0	0	50	4	8	0	0	NA	0	0	NA	1.731976103	1	0	0.268023897	1	1	0.731976103	unphased	0.494687121	0.67582414	0.731976103	0.0025	0.9975	0	0	2	0.000119787	1	1	1	NA	NA	NA	NA
1351289	1206612126	PD9774b	18	59350978	A	T	-	-	-	-	-	-	33	0	0	45	4	8.888888889	0	0	NA	0	0	NA	1.731976103	1	0	0.268023897	1	1	0.731976103	unphased	0.549652356	0.750915711	0.731976103	0.00375	0.99625	0	0	2	7.91E-05	1	1	1	NA	NA	NA	NA
1351289	1206612315	PD9774b	18	62059886	A	T	-	-	-	-	-	-	25	0	0	59	5	8.474576271	0	0	NA	0	0	NA	1.731976103	1	0	0.268023897	1	1	0.731976103	unphased	0.524032967	0.715915403	0.731976103	0.00625	0.99375	0	0	2	1.25E-05	1	1	1	NA	NA	NA	NA
1351289	1206612321	PD9774b	18	62190206	A	T	-	-	-	-	-	-	27	0	0	53	4	7.547169811	0	0	NA	0	0	NA	1.731976103	1	0	0.268023897	1	1	0.731976103	unphased	0.466685963	0.637569943	0.731976103	0.00375	0.99625	0	0	2	0.000150502	1	1	1	NA	NA	NA	NA
1351289	1206612410	PD9774b	18	63194492	C	T	-	-	-	-	-	-	44	0	0	44	9	20.45454545	0	0	NA	0	0	NA	1.731976103	1	0	0.268023897	1	1	0.731976103	unphased	1.264825024	1.264825024	1	0.00125	0.99625	0.0025	0	2	1.18E-12	1	1	1	NA	NA	NA	NA
1351289	1206612529	PD9774b	18	64494375	G	T	-	-	-	-	-	-	31	0	0	65	5	7.692307692	0	0	NA	0	0	NA	1.731976103	1	0	0.268023897	1	1	0.731976103	unphased	0.475660693	0.649830904	0.731976103	0.00125	0.99875	0	0	2	2.01E-05	1	1	1	NA	NA	NA	NA
1351289	1206612657	PD9774b	18	65861785	G	T	-	-	-	-	-	-	29	0	0	52	7	13.46153846	248	0	0	419	33	7.875894988	1.731976103	1	0	0.268023897	1	1	0.731976103	unphased	0.832406212	1.137204082	0.731976103	0	1	0	0	2	8.58E-09	1	1.92E-28	1	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206612903	PD9774b	18	68922270	C	T	-	-	-	-	-	-	42	0	0	57	5	8.771929825	0	0	NA	0	0	NA	1.731976103	1	0	0.268023897	1	1	0.731976103	unphased	0.542420088	0.741035241	0.731976103	0.005	0.99375	0.00125	0	2	1.05E-05	1	1	1	NA	NA	NA	NA
1351289	1206612938	PD9774b	18	69293607	C	T	-	-	-	-	-	-	29	0	0	46	12	26.08695652	0	0	NA	0	0	NA	1.731976103	1	0	0.268023897	1	1	0.731976103	unphased	1.613110176	1.613110176	1	0	0.98375	0.01625	0	2	8.12E-18	1	1	1	NA	NA	NA	NA
1351289	1206613036	PD9774b	18	70388730	G	T	-	-	-	-	-	-	34	0	0	58	12	20.68965517	0	0	NA	0	0	NA	1.731976103	1	0	0.268023897	1	1	0.731976103	unphased	1.279363243	1.279363243	1	0	0.99875	0.00125	0	2	1.76E-16	1	1	1	NA	NA	NA	NA
1351289	1206613048	PD9774b	18	70523036	G	T	NETO1	CCDS12000.1	r.?	-	-	intronic	34	0	0	49	7	14.28571429	0	0	NA	0	0	NA	1.731976103	1	0	0.268023897	1	1	0.731976103	unphased	0.883369858	0.883369858	1	0.0025	0.9975	0	0	2	5.58E-09	1	1	1	NA	NA	NA	NA
1351289	1206613214	PD9774b	18	72602602	C	T	ZNF407	CCDS45885.1	r.?	-	-	intronic	40	0	0	52	6	11.53846154	0	0	NA	0	0	NA	1.731976103	1	0	0.268023897	1	1	0.731976103	unphased	0.713491039	0.974746356	0.731976103	0.00125	0.99875	0	0	2	2.61E-07	1	1	1	NA	NA	NA	NA
1351289	1206613257	PD9774b	18	73252417	G	T	-	-	-	-	-	-	41	0	0	58	8	13.79310345	0	0	NA	0	0	NA	1.731976103	1	0	0.268023897	1	1	0.731976103	unphased	0.852908828	0.852908828	1	0.00125	0.99875	0	0	2	5.99E-10	1	1	1	NA	NA	NA	NA
1351289	1206613482	PD9774b	18	75828599	G	T	-	-	-	-	-	-	30	0	0	41	8	19.51219512	243	1	0.411522634	112	6	5.357142857	1.731976103	1	0	0.268023897	1	1	0.731976103	unphased	1.206553953	1.206553953	1	0	0.99875	0.00125	0	2	3.22E-11	1	2.38E-05	0.704192881	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206613490	PD9774b	18	75951571	G	T	-	-	-	-	-	-	35	0	0	49	5	10.20408163	0	0	NA	0	0	NA	1.731976103	1	0	0.268023897	1	1	0.731976103	unphased	0.63097847	0.862020587	0.731976103	0.00125	0.99875	0	0	2	4.96E-06	1	1	1	NA	NA	NA	NA
1351289	1206614268	PD9774b	19	3255526	G	T	CELF5	CCDS12106.1	r.?	-	-	intronic	23	0	0	38	5	13.15789474	0	0	NA	3	2	66.66666667	0	0	0	1	NA	NA	NA	unphased	0.58573854	0.58573854	1	0.005	0.995	0	0	2	1.37E-06	1	7.48E-05	1	NA	NA	NA	NA
1351289	1206614489	PD9774b	19	5156981	C	T	KDM4B	CCDS12138.1	r.?	-	-	downstream	29	0	0	51	5	9.803921569	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.436432638	0.436432638	1	0.015	0.985	0	0	2	6.06E-06	1	1	1	NA	NA	NA	NA
1351289	1206615262	PD9774b	19	12106262	G	T	ENSG00000219665	ENST00000406892	r.?	-	-	intronic	37	0	0	41	4	9.756097561	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.434303698	0.434303698	1	0.00875	0.99125	0	0	2	5.46E-05	1	1	1	NA	NA	NA	NA
1351289	1206615285	PD9774b	19	12380339	A	T	ZNF44	CCDS45988.1	r.?	-	-	downstream	29	0	0	32	5	15.625	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.695564516	0.695564516	1	0	1	0	0	2	5.62E-07	1	1	1	NA	NA	NA	NA
1351289	1206615595	PD9774b	19	15584228	C	T	PGLYRP2	CCDS12330.2	r.?	-	-	intronic	20	0	0	38	5	13.15789474	0	0	NA	0	0	NA	1.527660281	1	0	0.472339719	1	1	0.527660281	unphased	0.786746472	0.786746472	1	0.00125	0.99875	0	0	2	1.37E-06	1	1	1	NA	NA	NA	NA
1351289	1206616162	PD9774b	19	20318981	G	T	ZNF90	ENST00000427401	r.?	-	-	intronic	35	0	0	64	15	23.4375	0	0	NA	0	0	NA	1.527660281	1	0	0.472339719	1	1	0.527660281	unphased	1.401392153	1.401392153	1	0.0025	0.98875	0.00875	0	2	3.87E-21	1	1	1	NA	NA	NA	NA
1351289	1206617664	PD9774b	19	28837913	C	T	-	-	-	-	-	-	30	0	0	54	5	9.259259259	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.504778973	0.504778973	1	0.0075	0.9925	0	0	2	8.06E-06	1	1	1	NA	NA	NA	NA
1351289	1206617692	PD9774b	19	29086599	G	T	AC005307.1	ENST00000511462	r.?	-	-	intronic	33	0	0	60	13	21.66666667	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.181182796	1.181182796	1	0.00125	0.99625	0.0025	0	2	5.07E-18	1	1	1	NA	NA	NA	NA
1351289	1206617726	PD9774b	19	29379729	G	T	-	-	-	-	-	-	40	0	0	53	11	20.75471698	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.131466829	1.131466829	1	0	0.99875	0.00125	0	2	3.07E-15	1	1	1	NA	NA	NA	NA
1351289	1206617754	PD9774b	19	29806071	A	T	-	-	-	-	-	-	38	0	0	49	15	30.6122449	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.668861093	1.668861093	1	0	0.9725	0.0275	0	2	4.10E-23	1	1	1	NA	NA	NA	NA
1351289	1206617852	PD9774b	19	30736564	G	T	-	-	-	-	-	-	34	0	0	51	4	7.843137255	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.427577483	0.427577483	1	0.015	0.985	0	0	2	0.000129466	1	1	1	NA	NA	NA	NA
1351289	1206617855	PD9774b	19	30748089	A	T	-	-	-	-	-	-	48	0	0	69	5	7.246376812	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.395044413	0.395044413	1	0.0275	0.9725	0	0	2	2.69E-05	1	1	1	NA	NA	NA	NA
1351289	1206617992	PD9774b	19	32694724	G	T	-	-	-	-	-	-	19	0	0	46	21	45.65217391	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	2.488779804	2.488779804	1	0	0.11125	0.87125	0.0175	3	2.94E-36	1	1	1	NA	NA	NA	NA
1351289	1206618027	PD9774b	19	33017079	C	T	-	-	-	-	-	-	35	0	0	54	8	14.81481481	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.807646356	0.807646356	1	0	1	0	0	2	3.31E-10	1	1	1	NA	NA	NA	NA
1351289	1206618178	PD9774b	19	34305883	A	T	KCTD15	CCDS46039.1	r.3147a>u	c.?	p.?	3'UTR variant	37	0	0	69	16	23.1884058	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.264142122	1.264142122	1	0	0.99875	0.00125	0	2	2.27E-22	1	1	1	NA	NA	NA	NA
1351289	1206618703	PD9774b	19	38770618	C	T	ENSG00000167642	CCDS12510.1	r.?	-	-	intronic	30	0	0	52	18	34.61538462	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.887096774	1.887096774	1	0	0.815	0.185	0	2	1.39E-28	1	1	1	NA	NA	NA	NA
1351289	1206619100	PD9774b	19	42628767	A	T	POU2F2	CCDS33035.1	r.?	-	-	intronic	30	0	0	53	13	24.52830189	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.337188071	1.337188071	1	0.00125	0.99	0.00875	0	2	8.53E-19	1	1	1	NA	NA	NA	NA
1351289	1206619110	PD9774b	19	42789231	G	T	CIC	CCDS12601.1	r.?	-	-	intronic	25	0	0	54	11	20.37037037	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.11051374	1.11051374	1	0	0.99875	0.00125	0	2	3.84E-15	1	1	1	NA	NA	NA	NA
1351289	1206619320	PD9774b	19	44624250	G	T	ZNF230	CCDS46100.1	r.?	-	-	intronic	26	0	0	42	5	11.9047619	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.649001536	0.649001536	1	0.0075	0.9925	0	0	2	2.28E-06	1	1	1	NA	NA	NA	NA
1351289	1206619601	PD9774b	19	46731121	C	T	IGFL1	CCDS46123.1	r.?	-	-	upstream	42	0	0	55	9	16.36363636	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.892082111	0.892082111	1	0	1	0	0	2	1.01E-11	1	1	1	NA	NA	NA	NA
1351289	1206619766	PD9774b	19	48265840	G	T	-	-	-	-	-	-	31	0	0	57	5	8.771929825	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.478211658	0.478211658	1	0.01125	0.98875	0	0	2	1.05E-05	1	1	1	NA	NA	NA	NA
1351289	1206620086	PD9774b	19	50217419	C	T	CPT1C	CCDS46147.1	r.?	-	-	downstream	30	0	0	39	11	28.20512821	0	0	NA	0	0	NA	1.434080173	1	0	0.565919827	1	1	0.434080173	unphased	1.660067278	1.660067278	1	0	0.97875	0.02125	0	2	7.20E-17	1	1	1	NA	NA	NA	NA
1351289	1206620304	PD9774b	19	51952188	C	T	SIGLEC8	CCDS33086.1	r.?	-	-	downstream	26	0	0	44	9	20.45454545	0	0	NA	0	0	NA	1.434080173	1	0	0.565919827	1	1	0.434080173	unphased	1.203891766	1.203891766	1	0	0.99375	0.00625	0	2	1.18E-12	1	1	1	NA	NA	NA	NA
1351289	1206620767	PD9774b	19	55358497	G	T	KIR3DL2	CCDS12906.1	r.?	-	-	upstream	38	0	0	50	10	20	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	1.490322581	1.490322581	1	0	0.9925	0.0075	0	2	8.36E-14	1	1	1	NA	NA	NA	NA
1351289	1206620824	PD9774b	19	55705265	G	T	PTPRH	CCDS33110.1	r.?	-	-	intronic	28	0	0	37	6	16.21621622	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	1.20836966	1.20836966	1	0	0.9975	0.0025	0	2	3.18E-08	1	1	1	NA	NA	NA	NA
1351289	1206622087	PD9774b	2	7278456	C	T	ENSG00000234603	ENST00000441133	r.?	-	-	intronic	23	0	0	21	4	19.04761905	0	0	NA	0	0	NA	0.762600955	0	0	0.237399045	1	0	0.762600955	unphased	0.993183592	0.993183592	1	0.0025	0.995	0.0025	0	2	3.49E-06	1	1	1	NA	NA	NA	NA
1351289	1206622569	PD9774b	2	12339181	G	T	-	-	-	-	-	-	35	0	0	55	7	12.72727273	0	0	NA	0	0	NA	0.762600955	0	0	0.237399045	1	0	0.762600955	unphased	0.663627218	0.870215561	0.762600955	0	1	0	0	2	1.28E-08	1	1	1	NA	NA	NA	NA
1351289	1206622617	PD9774b	2	13272266	C	T	-	-	-	-	-	-	39	0	0	59	8	13.55932203	0	0	NA	0	0	NA	0.762600955	0	0	0.237399045	1	0	0.762600955	unphased	0.707012049	0.927106167	0.762600955	0	1	0	0	2	6.90E-10	1	1	1	NA	NA	NA	NA
1351289	1206622683	PD9774b	2	14117474	G	T	-	-	-	-	-	-	38	0	0	64	7	10.9375	0	0	NA	0	0	NA	0.762600955	0	0	0.237399045	1	0	0.762600955	unphased	0.570304641	0.747841498	0.762600955	0.0025	0.9975	0	0	2	3.78E-08	1	1	1	NA	NA	NA	NA
1351289	1206622801	PD9774b	2	15879092	G	T	ENSG00000231031	ENST00000436967	r.?	-	-	intronic	15	0	0	28	3	10.71428571	0	0	NA	0	0	NA	0.762600955	0	0	0.237399045	1	0	0.762600955	unphased	0.558665771	0.732579427	0.762600955	0.00375	0.99625	0	0	2	0.000372895	1	1	1	NA	NA	NA	NA
1351289	1206622842	PD9774b	2	16486195	G	T	-	-	-	-	-	-	38	0	0	56	11	19.64285714	0	0	NA	0	0	NA	0.762600955	0	0	0.237399045	1	0	0.762600955	unphased	1.024220579	1.024220579	1	0	1	0	0	2	5.91E-15	1	1	1	NA	NA	NA	NA
1351289	1206622967	PD9774b	2	18455665	A	T	-	-	-	-	-	-	40	0	0	41	6	14.63414634	0	0	NA	0	0	NA	0.762600955	0	0	0.237399045	1	0	0.762600955	unphased	0.763055687	1.00059629	0.762600955	0	0.99875	0.00125	0	2	6.05E-08	1	1	1	NA	NA	NA	NA
1351289	1206623136	PD9774b	2	20763739	G	T	-	-	-	-	-	-	31	0	0	59	10	16.94915254	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.093493712	1.093493712	1	0	0.9975	0.0025	0	2	4.91E-13	1	1	1	NA	NA	NA	NA
1351289	1206623199	PD9774b	2	21804394	G	T	-	-	-	-	-	-	42	0	0	62	10	16.12903226	1	0	0	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.040582726	1.040582726	1	0	1	0	0	2	8.29E-13	1	1	1	NA	NA	NA	NA
1351289	1206623221	PD9774b	2	22366294	G	T	-	-	-	-	-	-	37	0	0	54	6	11.11111111	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.716845878	0.716845878	1	0.00125	0.99875	0	0	2	3.29E-07	1	1	1	NA	NA	NA	NA
1351289	1206623444	PD9774b	2	24573008	C	T	ITSN2	CCDS1710.2	r.?	-	-	intronic	33	0	0	71	7	9.85915493	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	0.734666061	0.734666061	1	0.0025	0.9975	0	0	2	7.85E-08	1	1	1	NA	NA	NA	NA
1351289	1206623481	PD9774b	2	24761899	A	T	NCOA1	CCDS1713.1	r.?	-	-	intronic	31	0	0	75	13	17.33333333	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	1.291612903	1.291612903	1	0	0.99625	0.00375	0	2	1.16E-16	1	1	1	NA	NA	NA	NA
1351289	1206623683	PD9774b	2	26129720	A	T	-	-	-	-	-	-	31	0	0	70	11	15.71428571	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	1.170967742	1.170967742	1	0.0025	0.995	0.0025	0	2	8.06E-14	1	1	1	NA	NA	NA	NA
1351289	1206623829	PD9774b	2	27241393	G	T	MAPRE3	CCDS1731.1	r.?	-	-	intronic	37	0	0	73	10	13.69863014	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	1.020768891	1.020768891	1	0.00125	0.9975	0.00125	0	2	4.56E-12	1	1	1	NA	NA	NA	NA
1351289	1206624135	PD9774b	2	29964727	A	T	ALK	CCDS33172.1	r.?	-	-	intronic	29	0	0	70	9	12.85714286	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	0.958064516	0.958064516	1	0.00125	0.9975	0.00125	0	2	9.65E-11	1	1	1	NA	NA	NA	NA
1351289	1206624602	PD9774b	2	35213017	C	T	-	-	-	-	-	-	51	0	0	68	7	10.29411765	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	0.767077799	0.767077799	1	0	1	0	0	2	5.80E-08	1	1	1	NA	NA	NA	NA
1351289	1206624626	PD9774b	2	35489926	C	T	-	-	-	-	-	-	30	0	0	64	7	10.9375	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	0.815020161	0.815020161	1	0.00125	0.99875	0	0	2	3.78E-08	1	1	1	NA	NA	NA	NA
1351289	1206625585	PD9774b	2	43551996	C	T	THADA	CCDS46268.1	r.?	-	-	intronic	37	0	0	65	8	12.30769231	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.794044665	0.794044665	1	0.00125	0.99875	0	0	2	1.53E-09	1	1	1	NA	NA	NA	NA
1351289	1206625704	PD9774b	2	45070752	G	T	-	-	-	-	-	-	47	0	0	56	8	14.28571429	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.921658986	0.921658986	1	0.00125	0.99625	0.0025	0	2	4.48E-10	1	1	1	NA	NA	NA	NA
1351289	1206625758	PD9774b	2	45864905	C	T	-	-	-	-	-	-	32	0	0	67	10	14.92537313	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.962927299	0.962927299	1	0.00125	0.99875	0	0	2	1.87E-12	1	1	1	NA	NA	NA	NA
1351289	1206625763	PD9774b	2	45933599	G	T	PRKCE	CCDS1824.1	r.?	-	-	intronic	32	0	0	56	7	12.5	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.806451613	0.806451613	1	0.00125	0.99875	0	0	2	1.46E-08	1	1	1	NA	NA	NA	NA
1351289	1206625949	PD9774b	2	47911323	G	T	-	-	-	-	-	-	21	0	0	40	8	20	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.290322581	1.290322581	1	0	0.99375	0.00625	0	2	2.61E-11	1	1	1	NA	NA	NA	NA
1351289	1206626140	PD9774b	2	50418210	A	T	NRXN1	CCDS46282.1	r.?	-	-	intronic	20	0	0	55	4	7.272727273	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.469208211	0.469208211	1	0.00875	0.99125	0	0	2	0.000173903	1	1	1	NA	NA	NA	NA
1351289	1206626244	PD9774b	2	51764071	G	T	-	-	-	-	-	-	41	0	0	49	7	14.28571429	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.921658986	0.921658986	1	0	1	0	0	2	5.58E-09	1	1	1	NA	NA	NA	NA
1351289	1206626296	PD9774b	2	52661233	C	T	-	-	-	-	-	-	32	0	0	41	5	12.19512195	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.786782061	0.786782061	1	0	1	0	0	2	2.02E-06	1	1	1	NA	NA	NA	NA
1351289	1206626340	PD9774b	2	53367035	C	T	-	-	-	-	-	-	24	0	0	58	5	8.620689655	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.556173526	0.556173526	1	0.00875	0.99125	0	0	2	1.15E-05	1	1	1	NA	NA	NA	NA
1351289	1206626385	PD9774b	2	54086244	C	T	PSME4	CCDS33197.2	r.?	-	-	downstream	33	0	0	46	9	19.56521739	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.26227209	1.26227209	1	0	0.9975	0.0025	0	2	1.82E-12	1	1	1	NA	NA	NA	NA
1351289	1206626489	PD9774b	2	55346441	C	T	-	-	-	-	-	-	36	0	0	58	6	10.34482759	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.667408231	0.667408231	1	0.0075	0.9925	0	0	2	5.06E-07	1	1	1	NA	NA	NA	NA
1351289	1206626885	PD9774b	2	61011447	C	T	PAPOLG	CCDS1863.1	r.?	-	-	intronic	42	0	0	57	5	8.771929825	0	0	NA	0	0	NA	1.588737909	1	0	0.411262091	1	1	0.588737909	unphased	0.529855334	0.89998508	0.588737909	0.0025	0.9975	0	0	2	1.05E-05	1	1	1	NA	NA	NA	NA
1351289	1206626897	PD9774b	2	61232109	G	T	PUS10	CCDS1865.1	r.?	-	-	intronic	35	0	0	57	4	7.01754386	0	0	NA	0	0	NA	1.588737909	1	0	0.411262091	1	1	0.588737909	unphased	0.423884268	0.719988064	0.588737909	0.0025	0.99625	0.00125	0	2	0.000199821	1	1	1	NA	NA	NA	NA
1351289	1206626914	PD9774b	2	61352317	G	T	KIAA1841	CCDS46296.1	r.?	-	-	downstream	38	0	0	68	6	8.823529412	0	0	NA	0	0	NA	1.588737909	1	0	0.411262091	1	1	0.588737909	unphased	0.532972131	0.90527911	0.588737909	0.0025	0.9975	0	0	2	1.31E-06	1	1	1	NA	NA	NA	NA
1351289	1206627334	PD9774b	2	65769621	A	T	-	-	-	-	-	-	55	0	0	61	10	16.39344262	0	0	NA	0	0	NA	1.588737909	1	0	0.411262091	1	1	0.588737909	unphased	0.990221445	0.990221445	1	0	1	0	0	2	6.98E-13	1	1	1	NA	NA	NA	NA
1351289	1206627432	PD9774b	2	66980597	G	T	-	-	-	-	-	-	25	0	0	45	8	17.77777778	0	0	NA	0	0	NA	1.588737909	1	0	0.411262091	1	1	0.588737909	unphased	1.073840144	1.073840144	1	0.00125	0.9975	0.00125	0	2	7.14E-11	1	1	1	NA	NA	NA	NA
1351289	1206627453	PD9774b	2	67416277	G	T	-	-	-	-	-	-	34	0	0	52	7	13.46153846	0	0	NA	0	0	NA	1.588737909	1	0	0.411262091	1	1	0.588737909	unphased	0.813124148	0.813124148	1	0.0025	0.99625	0.00125	0	2	8.58E-09	1	1	1	NA	NA	NA	NA
1351289	1206627454	PD9774b	2	67416278	C	T	-	-	-	-	-	-	34	0	0	49	6	12.24489796	0	0	NA	0	0	NA	1.588737909	1	0	0.411262091	1	1	0.588737909	unphased	0.739634793	1.256305704	0.588737909	0	0.99625	0.00375	0	2	1.82E-07	1	1	1	NA	NA	NA	NA
1351289	1206627747	PD9774b	2	70865937	A	T	-	-	-	-	-	-	32	0	0	49	5	10.20408163	0	0	NA	0	0	NA	1.588737909	1	0	0.411262091	1	1	0.588737909	unphased	0.616362328	1.04692142	0.588737909	0	1	0	0	2	4.96E-06	1	1	1	NA	NA	NA	NA
1351289	1206628013	PD9774b	2	74916829	G	T	-	-	-	-	-	-	24	0	0	46	7	15.2173913	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.981767181	0.981767181	1	0.00125	0.99875	0	0	2	3.53E-09	1	1	1	NA	NA	NA	NA
1351289	1206628225	PD9774b	2	77396564	G	T	LRRTM4	CCDS46346.1	r.?	-	-	intronic	42	0	0	58	5	8.620689655	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.556173526	0.556173526	1	0.01	0.99	0	0	2	1.15E-05	1	1	1	NA	NA	NA	NA
1351289	1206628270	PD9774b	2	77928947	G	T	-	-	-	-	-	-	33	0	0	61	5	8.196721311	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.52882073	0.52882073	1	0.01125	0.98875	0	0	2	1.47E-05	1	1	1	NA	NA	NA	NA
1351289	1206628316	PD9774b	2	78522001	C	T	-	-	-	-	-	-	38	0	0	61	7	11.47540984	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.740349022	0.740349022	1	0.00375	0.99625	0	0	2	2.69E-08	1	1	1	NA	NA	NA	NA
1351289	1206628317	PD9774b	2	78561878	G	T	-	-	-	-	-	-	38	0	0	55	7	12.72727273	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.82111437	0.82111437	1	0.00125	0.99875	0	0	2	1.28E-08	1	1	1	NA	NA	NA	NA
1351289	1206628330	PD9774b	2	78699711	G	T	-	-	-	-	-	-	31	0	0	54	10	18.51851852	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.19474313	1.19474313	1	0	0.99875	0.00125	0	2	1.91E-13	1	1	1	NA	NA	NA	NA
1351289	1206628355	PD9774b	2	78956721	G	T	-	-	-	-	-	-	33	0	0	54	7	12.96296296	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.836320191	0.836320191	1	0.0075	0.9925	0	0	2	1.13E-08	1	1	1	NA	NA	NA	NA
1351289	1206628366	PD9774b	2	79120241	C	T	-	-	-	-	-	-	35	0	0	58	8	13.79310345	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.889877642	0.889877642	1	0.00125	0.9975	0.00125	0	2	5.99E-10	1	1	1	NA	NA	NA	NA
1351289	1206628399	PD9774b	2	79383348	C	T	REG3A	CCDS1965.1	r.?	-	-	downstream	35	0	0	55	8	14.54545455	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.938416422	0.938416422	1	0	0.99875	0.00125	0	2	3.86E-10	1	1	1	NA	NA	NA	NA
1351289	1206628404	PD9774b	2	79436795	C	T	CTNNA2	CCDS42703.2	r.?	-	-	intronic	33	0	0	62	8	12.90322581	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.832466181	0.832466181	1	0.0025	0.9975	0	0	2	1.04E-09	1	1	1	NA	NA	NA	NA
1351289	1206628408	PD9774b	2	79503603	A	T	CTNNA2	CCDS42703.2	r.?	-	-	intronic	32	0	0	59	6	10.16949153	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.656096227	0.656096227	1	0.00375	0.99625	0	0	2	5.61E-07	1	1	1	NA	NA	NA	NA
1351289	1206628614	PD9774b	2	81816942	A	T	-	-	-	-	-	-	34	0	0	50	8	16	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.032258065	1.032258065	1	0	1	0	0	2	1.74E-10	1	1	1	NA	NA	NA	NA
1351289	1206628683	PD9774b	2	82626208	A	T	-	-	-	-	-	-	34	0	0	59	5	8.474576271	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.546746856	0.546746856	1	0.01125	0.98875	0	0	2	1.25E-05	1	1	1	NA	NA	NA	NA
1351289	1206628783	PD9774b	2	84062344	C	T	-	-	-	-	-	-	35	0	0	60	10	16.66666667	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.075268817	1.075268817	1	0	0.99875	0.00125	0	2	5.86E-13	1	1	1	NA	NA	NA	NA
1351289	1206628830	PD9774b	2	84547957	A	T	-	-	-	-	-	-	25	0	0	48	8	16.66666667	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.075268817	1.075268817	1	0.00125	0.99625	0.0025	0	2	1.23E-10	1	1	1	NA	NA	NA	NA
1351289	1206628966	PD9774b	2	86175479	A	T	-	-	-	-	-	-	35	0	0	58	7	12.06896552	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.778642937	0.778642937	1	0.005	0.995	0	0	2	1.88E-08	1	1	1	NA	NA	NA	NA
1351289	1206629021	PD9774b	2	86840257	C	T	RNF103	CCDS33237.1	r.?	-	-	intronic	38	0	0	44	5	11.36363636	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.73313783	0.73313783	1	0.00375	0.99625	0	0	2	2.88E-06	1	1	1	NA	NA	NA	NA
1351289	1206629490	PD9774b	2	89368596	C	T	-	-	-	-	-	-	37	0	0	47	5	10.63829787	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.686341798	0.686341798	1	0	1	0	0	2	4.02E-06	1	1	1	NA	NA	NA	NA
1351289	1206633691	PD9774b	2	97366571	G	T	ENSG00000249715	CCDS4406.1	r.?	-	-	intronic	34	0	0	64	9	14.0625	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.907258065	0.907258065	1	0	1	0	0	2	4.20E-11	1	1	1	NA	NA	NA	NA
1351289	1206633711	PD9774b	2	97559448	C	T	FAM178B	CCDS46366.1	r.?	-	-	intronic	30	0	0	60	6	10	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.64516129	0.64516129	1	0.005	0.995	0	0	2	6.21E-07	1	1	1	NA	NA	NA	NA
1351289	1206634019	PD9774b	2	99519451	C	T	C2orf55	CCDS42720.1	r.?	-	-	intronic	29	0	0	57	15	26.31578947	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.697792869	1.697792869	1	0	0.97375	0.02625	0	2	5.53E-22	1	1	1	NA	NA	NA	NA
1351289	1206634187	PD9774b	2	101297761	G	T	-	-	-	-	-	-	36	0	0	72	10	13.88888889	0	0	NA	0	0	NA	4	3	1	1	NA	NA	NA	unphased	1.173835125	1.173835125	1	0	0.9975	0.0025	0	2	3.95E-12	1	1	1	NA	NA	NA	NA
1351289	1206634367	PD9774b	2	103309351	C	T	SLC9A2	CCDS2062.1	r.?	-	-	intronic	33	0	0	68	8	11.76470588	0	0	NA	0	0	NA	4	3	1	1	NA	NA	NA	unphased	0.9943074	0.9943074	1	0	1	0	0	2	2.21E-09	1	1	1	NA	NA	NA	NA
1351289	1206634411	PD9774b	2	104074417	C	T	-	-	-	-	-	-	42	0	0	75	5	6.666666667	0	0	NA	0	0	NA	1.576711255	1	0	0.423288745	1	1	0.576711255	unphased	0.401888277	0.696862206	0.576711255	0.00125	0.99875	0	0	2	4.03E-05	1	1	1	NA	NA	NA	NA
1351289	1206634549	PD9774b	2	106035223	G	T	FHL2	CCDS2070.1	r.?	-	-	intronic	25	0	0	58	6	10.34482759	0	0	NA	0	0	NA	1.576711255	1	0	0.423288745	1	1	0.576711255	unphased	0.623619741	1.081337905	0.576711255	0	0.9975	0.0025	0	2	5.06E-07	1	1	1	NA	NA	NA	NA
1351289	1206634553	PD9774b	2	106134429	C	T	-	-	-	-	-	-	33	0	0	36	8	22.22222222	0	0	NA	0	0	NA	1.576711255	1	0	0.423288745	1	1	0.576711255	unphased	1.339627591	1.339627591	1	0	0.995	0.005	0	2	1.04E-11	1	1	1	NA	NA	NA	NA
1351289	1206634912	PD9774b	2	110048794	G	T	SH3RF3	ENST00000309415	r.?	-	-	intronic	43	0	0	56	6	10.71428571	0	0	NA	0	0	NA	1.576711255	1	0	0.423288745	1	1	0.576711255	unphased	0.645891874	1.119957116	0.576711255	0.0025	0.99625	0.00125	0	2	4.09E-07	1	1	1	NA	NA	NA	NA
1351289	1206634913	PD9774b	2	110048795	G	T	SH3RF3	ENST00000309415	r.?	-	-	intronic	44	0	0	56	6	10.71428571	0	0	NA	0	0	NA	1.576711255	1	0	0.423288745	1	1	0.576711255	unphased	0.645891874	1.119957116	0.576711255	0.00125	0.99625	0.0025	0	2	4.09E-07	1	1	1	NA	NA	NA	NA
1351289	1206635025	PD9774b	2	112133258	G	T	-	-	-	-	-	-	26	0	0	45	4	8.888888889	0	0	NA	0	0	NA	1.576711255	1	0	0.423288745	1	1	0.576711255	unphased	0.535851036	0.929149607	0.576711255	0.00375	0.995	0.00125	0	2	7.91E-05	1	1	1	NA	NA	NA	NA
1351289	1206635650	PD9774b	2	116763818	C	T	-	-	-	-	-	-	26	0	0	37	4	10.81081081	0	0	NA	0	0	NA	1.576711255	1	0	0.423288745	1	1	0.576711255	unphased	0.65171072	1.13004682	0.576711255	0.00375	0.995	0.00125	0	2	3.62E-05	1	1	1	NA	NA	NA	NA
1351289	1206635721	PD9774b	2	117747699	A	T	-	-	-	-	-	-	29	0	0	55	11	20	0	0	NA	0	0	NA	1.576711255	1	0	0.423288745	1	1	0.576711255	unphased	1.205664832	1.205664832	1	0.00125	0.99625	0.0025	0	2	4.77E-15	1	1	1	NA	NA	NA	NA
1351289	1206635860	PD9774b	2	119403410	C	T	-	-	-	-	-	-	31	0	0	59	10	16.94915254	0	0	NA	0	0	NA	1.576711255	1	0	0.423288745	1	1	0.576711255	unphased	1.021749857	1.021749857	1	0	1	0	0	2	4.91E-13	1	1	1	NA	NA	NA	NA
1351289	1206635981	PD9774b	2	121110092	C	T	INHBB	CCDS2132.1	r.?	-	-	downstream	40	0	0	48	9	18.75	0	0	NA	0	0	NA	1.576711255	1	0	0.423288745	1	1	0.576711255	unphased	1.13031078	1.13031078	1	0	0.99875	0.00125	0	2	2.75E-12	1	1	1	NA	NA	NA	NA
1351289	1206636016	PD9774b	2	121375172	C	T	-	-	-	-	-	-	26	0	0	45	8	17.77777778	0	0	NA	0	0	NA	1.576711255	1	0	0.423288745	1	1	0.576711255	unphased	1.071702073	1.071702073	1	0	0.99875	0.00125	0	2	7.14E-11	1	1	1	NA	NA	NA	NA
1351289	1206636286	PD9774b	2	125244816	A	T	CNTNAP5	CCDS46401.1	r.?	-	-	intronic	32	0	0	41	3	7.317073171	0	0	NA	0	0	NA	0.854554788	0	0	0.145445212	1	0	0.854554788	unphased	0.388256173	0.454337367	0.854554788	0.005	0.995	0	0	2	0.001155993	1	1	1	NA	NA	NA	NA
1351289	1206636390	PD9774b	2	126546847	A	T	-	-	-	-	-	-	34	0	0	48	5	10.41666667	0	0	NA	0	0	NA	0.854554788	0	0	0.145445212	1	0	0.854554788	unphased	0.552725801	0.646799724	0.854554788	0.005	0.995	0	0	2	4.47E-06	1	1	1	NA	NA	NA	NA
1351289	1206636659	PD9774b	2	130546557	G	T	-	-	-	-	-	-	45	0	0	50	7	14	0	0	NA	0	0	NA	0.854554788	0	0	0.145445212	1	0	0.854554788	unphased	0.742863477	0.869298829	0.854554788	0.0025	0.99625	0.00125	0	2	6.46E-09	1	1	1	NA	NA	NA	NA
1351289	1206636683	PD9774b	2	130768987	A	T	-	-	-	-	-	-	40	0	0	39	3	7.692307692	0	0	NA	0	0	NA	0.854554788	0	0	0.145445212	1	0	0.854554788	unphased	0.408166745	0.477636719	0.854554788	0.01375	0.98625	0	0	2	0.000998458	1	1	1	NA	NA	NA	NA
1351289	1206638988	PD9774b	2	134080997	C	T	NCKAP5	CCDS46418.1	r.?	-	-	intronic	34	0	0	50	7	14	0	0	NA	0	0	NA	0.854554788	0	0	0.145445212	1	0	0.854554788	unphased	0.742863477	0.869298829	0.854554788	0	1	0	0	2	6.46E-09	1	1	1	NA	NA	NA	NA
1351289	1206639278	PD9774b	2	138315166	C	T	THSD7B	ENST00000409968	r.?	-	-	intronic	32	0	0	47	6	12.76595745	0	0	NA	0	0	NA	0.854554788	0	0	0.145445212	1	0	0.854554788	unphased	0.67738311	0.792673705	0.854554788	0.00125	0.99875	0	0	2	1.41E-07	1	1	1	NA	NA	NA	NA
1351289	1206639396	PD9774b	2	139934459	A	T	-	-	-	-	-	-	37	0	0	42	8	19.04761905	0	0	NA	0	0	NA	0.854554788	0	0	0.145445212	1	0	0.854554788	unphased	1.010698608	1.010698608	1	0	1	0	0	2	3.96E-11	1	1	1	NA	NA	NA	NA
1351289	1206639422	PD9774b	2	140291930	C	T	-	-	-	-	-	-	12	0	0	31	5	16.12903226	0	0	NA	0	0	NA	0.854554788	0	0	0.145445212	1	0	0.854554788	unphased	0.855833499	1.001496347	0.854554788	0	1	0	0	2	4.76E-07	1	1	1	NA	NA	NA	NA
1351289	1206639607	PD9774b	2	142193082	A	T	LRP1B	CCDS2182.1	r.?	-	-	intronic	31	0	0	49	14	28.57142857	0	0	NA	0	0	NA	0.854554788	0	0	0.145445212	1	0	0.854554788	unphased	1.516047912	1.516047912	1	0	0.985	0.015	0	2	3.50E-21	1	1	1	NA	NA	NA	NA
1351289	1206639684	PD9774b	2	142868700	G	T	LRP1B	CCDS2182.1	r.?	-	-	intronic	39	0	0	40	8	20	0	0	NA	0	0	NA	0.854554788	0	0	0.145445212	1	0	0.854554788	unphased	1.061233538	1.061233538	1	0.00125	0.99875	0	0	2	2.61E-11	1	1	1	NA	NA	NA	NA
1351289	1206639935	PD9774b	2	146637058	G	T	-	-	-	-	-	-	39	0	0	50	9	18	0	0	NA	0	0	NA	0.854554788	0	0	0.145445212	1	0	0.854554788	unphased	0.955110184	0.955110184	1	0.00125	0.99875	0	0	2	4.07E-12	1	1	1	NA	NA	NA	NA
1351289	1206640486	PD9774b	2	154587364	C	T	-	-	-	-	-	-	42	0	0	47	8	17.0212766	0	0	NA	0	0	NA	0.854554788	0	0	0.145445212	1	0	0.854554788	unphased	0.903177479	1.056898273	0.854554788	0.00125	0.9975	0.00125	0	2	1.03E-10	1	1	1	NA	NA	NA	NA
1351289	1206640760	PD9774b	2	159244648	C	T	CCDC148	CCDS33304.1	r.?	-	-	intronic	31	0	0	53	8	15.09433962	0	0	NA	0	0	NA	0.854554788	0	0	0.145445212	1	0	0.854554788	unphased	0.800930972	0.937249412	0.854554788	0	0.99875	0.00125	0	2	2.83E-10	1	1	1	NA	NA	NA	NA
1351289	1206640966	PD9774b	2	161920686	G	T	-	-	-	-	-	-	35	0	0	47	8	17.0212766	0	0	NA	0	0	NA	0.854554788	0	0	0.145445212	1	0	0.854554788	unphased	0.903177479	1.056898273	0.854554788	0	1	0	0	2	1.03E-10	1	1	1	NA	NA	NA	NA
1351289	1206640972	PD9774b	2	162053459	A	T	TANK	CCDS2215.1	r.?	-	-	intronic	29	0	0	40	5	12.5	0	0	NA	0	0	NA	0.854554788	0	0	0.145445212	1	0	0.854554788	unphased	0.663270961	0.776159669	0.854554788	0	0.99875	0.00125	0	2	1.78E-06	1	1	1	NA	NA	NA	NA
1351289	1206641115	PD9774b	2	163820654	C	T	-	-	-	-	-	-	27	0	0	43	10	23.25581395	241	0	0	261	36	13.79310345	0.854554788	0	0	0.145445212	1	0	0.854554788	unphased	1.233992486	1.233992486	1	0	0.9975	0.0025	0	2	1.61E-14	1	1.04E-39	1	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206641121	PD9774b	2	163903096	C	T	-	-	-	-	-	-	44	0	0	60	9	15	0	0	NA	0	0	NA	0.854554788	0	0	0.145445212	1	0	0.854554788	unphased	0.795925154	0.931391603	0.854554788	0.00125	0.99875	0	0	2	2.29E-11	1	1	1	NA	NA	NA	NA
1351289	1206641152	PD9774b	2	164373633	C	T	-	-	-	-	-	-	31	0	0	44	8	18.18181818	0	0	NA	0	0	NA	0.854554788	0	0	0.145445212	1	0	0.854554788	unphased	0.964757762	0.964757762	1	0.00125	0.9975	0.00125	0	2	5.90E-11	1	1	1	NA	NA	NA	NA
1351289	1206641217	PD9774b	2	165449540	C	T	GRB14	CCDS2222.1	r.?	-	-	intronic	46	0	0	50	9	18	161	0	0	167	16	9.580838323	0.854554788	0	0	0.145445212	1	0	0.854554788	unphased	0.955110184	0.955110184	1	0.00125	0.99875	0	0	2	4.07E-12	1	6.24E-16	1	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206641289	PD9774b	2	166295582	C	T	-	-	-	-	-	-	41	0	0	41	9	21.95121951	0	0	NA	0	0	NA	0.854554788	0	0	0.145445212	1	0	0.854554788	unphased	1.164768518	1.164768518	1	0.00125	0.99875	0	0	2	5.92E-13	1	1	1	NA	NA	NA	NA
1351289	1206641534	PD9774b	2	169422470	C	T	LASS6	CCDS2228.1	r.?	-	-	intronic	46	0	0	54	11	20.37037037	0	0	NA	0	0	NA	0.854554788	0	0	0.145445212	1	0	0.854554788	unphased	1.080886011	1.080886011	1	0	0.99875	0.00125	0	2	3.84E-15	1	1	1	NA	NA	NA	NA
1351289	1206641580	PD9774b	2	170245311	G	T	-	-	-	-	-	-	39	0	0	41	5	12.19512195	0	0	NA	0	0	NA	0.854554788	0	0	0.145445212	1	0	0.854554788	unphased	0.647093621	0.757228945	0.854554788	0.00125	0.99875	0	0	2	2.02E-06	1	1	1	NA	NA	NA	NA
1351289	1206641703	PD9774b	2	171464861	A	T	MYO3B	CCDS42773.1	r.?	-	-	intronic	50	0	0	51	10	19.60784314	0	0	NA	0	0	NA	0.854554788	0	0	0.145445212	1	0	0.854554788	unphased	1.040425037	1.040425037	1	0	0.99875	0.00125	0	2	1.04E-13	1	1	1	NA	NA	NA	NA
1351289	1206641838	PD9774b	2	172705753	C	T	SLC25A12	CCDS33327.1	r.?	-	-	intronic	38	0	0	45	8	17.77777778	0	0	NA	0	0	NA	0.854554788	0	0	0.145445212	1	0	0.854554788	unphased	0.943318701	0.943318701	1	0	1	0	0	2	7.14E-11	1	1	1	NA	NA	NA	NA
1351289	1206641845	PD9774b	2	172778830	G	T	HAT1	CCDS2245.1	r.?	-	-	upstream	32	0	0	36	11	30.55555556	0	0	NA	0	0	NA	0.854554788	0	0	0.145445212	1	0	0.854554788	unphased	1.621329017	1.621329017	1	0.00125	0.98375	0.015	0	2	2.62E-17	1	1	1	NA	NA	NA	NA
1351289	1206642242	PD9774b	2	177537675	A	T	-	-	-	-	-	-	38	0	0	58	23	39.65517241	0	0	NA	0	0	NA	1.770709529	1	0	0.229290471	2	0	0.770709529	unphased	2.467472689	1.393493765	1.770709529	0	0.97875	0.02125	0	2	8.87E-38	1	1	1	NA	NA	NA	NA
1351289	1206642315	PD9774b	2	178373323	G	T	AGPS	CCDS2275.1	r.?	-	-	intronic	40	0	0	62	22	35.48387097	0	0	NA	0	0	NA	1.770709529	1	0	0.229290471	2	0	0.770709529	unphased	2.207920863	1.246913075	1.770709529	0	0.9975	0.0025	0	2	6.75E-35	1	1	1	NA	NA	NA	NA
1351289	1206642320	PD9774b	2	178446525	C	T	-	-	-	-	-	-	33	0	0	60	20	33.33333333	0	0	NA	0	0	NA	1.770709529	1	0	0.229290471	2	0	0.770709529	unphased	2.074107477	1.171342585	1.770709529	0	1	0	0	2	3.30E-31	1	1	1	NA	NA	NA	NA
1351289	1206642377	PD9774b	2	178960955	A	T	PDE11A	CCDS42786.1	r.?	-	-	intronic	29	0	0	43	7	16.27906977	0	0	NA	0	0	NA	1.770709529	1	0	0.229290471	2	0	0.770709529	unphased	1.01293621	1.01293621	1	0.00125	0.9975	0.00125	0	2	2.15E-09	1	1	1	NA	NA	NA	NA
1351289	1206642477	PD9774b	2	180431520	C	T	ZNF385B	CCDS33339.1	r.?	-	-	intronic	29	0	0	67	8	11.94029851	0	0	NA	0	0	NA	1.770709529	1	0	0.229290471	2	0	0.770709529	unphased	0.742963873	0.963999853	0.770709529	0	1	0	0	2	1.96E-09	1	1	1	NA	NA	NA	NA
1351289	1206642558	PD9774b	2	181357006	G	T	-	-	-	-	-	-	40	0	0	45	14	31.11111111	0	0	NA	0	0	NA	1.770709529	1	0	0.229290471	2	0	0.770709529	unphased	1.935833646	1.09325308	1.770709529	0.00125	0.99875	0	0	2	8.81E-22	1	1	1	NA	NA	NA	NA
1351289	1206642571	PD9774b	2	181541165	C	T	-	-	-	-	-	-	41	0	0	64	11	17.1875	0	0	NA	0	0	NA	1.770709529	1	0	0.229290471	2	0	0.770709529	unphased	1.069461668	1.069461668	1	0	1	0	0	2	2.85E-14	1	1	1	NA	NA	NA	NA
1351289	1206642907	PD9774b	2	185193048	A	T	-	-	-	-	-	-	27	0	0	29	9	31.03448276	181	0	0	224	52	23.21428571	1.770709529	1	0	0.229290471	2	0	0.770709529	unphased	1.931065582	1.090560338	1.770709529	0.00125	0.99875	0	0	2	1.79E-14	1	3.10E-69	1	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206642924	PD9774b	2	185630479	C	T	ZNF804A	CCDS2291.1	r.?	-	-	intronic	45	0	0	52	22	42.30769231	0	0	NA	0	0	NA	1.770709529	1	0	0.229290471	2	0	0.770709529	unphased	2.632521029	1.48670405	1.770709529	0	0.9725	0.0275	0	2	5.59E-37	1	1	1	NA	NA	NA	NA
1351289	1206642930	PD9774b	2	185711235	G	T	ZNF804A	CCDS2291.1	r.?	-	-	intronic	38	0	0	52	14	26.92307692	0	0	NA	0	0	NA	1.770709529	1	0	0.229290471	2	0	0.770709529	unphased	1.675240655	0.946084396	1.770709529	0	1	0	0	2	9.04E-21	1	1	1	NA	NA	NA	NA
1351289	1206643154	PD9774b	2	188570260	C	T	-	-	-	-	-	-	43	0	0	67	20	29.85074627	0	0	NA	0	0	NA	1.770709529	1	0	0.229290471	2	0	0.770709529	unphased	1.857409681	1.048963509	1.770709529	0.00125	0.99875	0	0	2	4.42E-30	1	1	1	NA	NA	NA	NA
1351289	1206643195	PD9774b	2	188971669	C	T	-	-	-	-	-	-	28	0	0	52	5	9.615384615	0	0	NA	0	0	NA	1.770709529	1	0	0.229290471	2	0	0.770709529	unphased	0.598300234	0.776297958	0.770709529	0.00125	0.99875	0	0	2	6.68E-06	1	1	1	NA	NA	NA	NA
1351289	1206643226	PD9774b	2	189629370	A	T	DIRC1	CCDS2296.1	r.?	-	-	intronic	39	0	0	49	5	10.20408163	0	0	NA	0	0	NA	1.770709529	1	0	0.229290471	2	0	0.770709529	unphased	0.63493086	0.823826405	0.770709529	0.00125	0.99875	0	0	2	4.96E-06	1	1	1	NA	NA	NA	NA
1351289	1206643232	PD9774b	2	189707361	C	T	-	-	-	-	-	-	26	0	0	62	25	40.32258065	0	0	NA	0	0	NA	1.770709529	1	0	0.229290471	2	0	0.770709529	unphased	2.509000981	1.416946676	1.770709529	0	0.98125	0.01875	0	2	3.68E-41	1	1	1	NA	NA	NA	NA
1351289	1206644162	PD9774b	2	199807177	G	T	-	-	-	-	-	-	22	0	0	42	15	35.71428571	0	0	NA	0	0	NA	1.770709529	1	0	0.229290471	2	0	0.770709529	unphased	2.222258012	1.255009913	1.770709529	0	0.99875	0.00125	0	2	2.65E-24	1	1	1	NA	NA	NA	NA
1351289	1206644189	PD9774b	2	200301726	G	T	SATB2	CCDS2327.1	r.?	-	-	intronic	40	0	0	51	13	25.49019608	0	0	NA	0	0	NA	1.770709529	1	0	0.229290471	2	0	0.770709529	unphased	1.586082189	1.586082189	1	0	0.9825	0.0175	0	2	4.87E-19	1	1	1	NA	NA	NA	NA
1351289	1206644273	PD9774b	2	201118192	G	T	-	-	-	-	-	-	32	0	0	57	11	19.29824561	0	0	NA	0	0	NA	1.770709529	1	0	0.229290471	2	0	0.770709529	unphased	1.200799066	1.200799066	1	0	0.9975	0.0025	0	2	7.29E-15	1	1	1	NA	NA	NA	NA
1351289	1206644337	PD9774b	2	201717359	C	T	CLK1	CCDS2331.1	r.?	-	-	downstream	31	0	0	56	17	30.35714286	0	0	NA	0	0	NA	1.770709529	1	0	0.229290471	2	0	0.770709529	unphased	1.88891931	1.066758426	1.770709529	0.00125	0.99875	0	0	2	6.22E-26	1	1	1	NA	NA	NA	NA
1351289	1206644829	PD9774b	2	207725902	G	T	-	-	-	-	-	-	33	0	0	50	5	10	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.54516129	0.54516129	1	0.00375	0.99625	0	0	2	5.49E-06	1	1	1	NA	NA	NA	NA
1351289	1206644972	PD9774b	2	209439848	A	T	-	-	-	-	-	-	30	0	0	48	9	18.75	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.022177419	1.022177419	1	0.00125	0.99875	0	0	2	2.75E-12	1	1	1	NA	NA	NA	NA
1351289	1206645177	PD9774b	2	212261959	G	T	ERBB4	CCDS2394.1	r.?	-	-	intronic	31	0	0	52	5	9.615384615	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.524193548	0.524193548	1	0.01125	0.98875	0	0	2	6.68E-06	1	1	1	NA	NA	NA	NA
1351289	1206645439	PD9774b	2	215318547	C	T	VWC2L	CCDS46509.1	r.?	-	-	intronic	33	0	0	53	8	15.09433962	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.822884967	0.822884967	1	0.0025	0.9975	0	0	2	2.83E-10	1	1	1	NA	NA	NA	NA
1351289	1206645641	PD9774b	2	217642398	C	T	-	-	-	-	-	-	25	0	0	30	6	20	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.090322581	1.090322581	1	0	0.9975	0.0025	0	2	8.37E-09	1	1	1	NA	NA	NA	NA
1351289	1206646710	PD9774b	2	229675984	G	T	-	-	-	-	-	-	41	0	0	55	10	18.18181818	0	0	NA	0	0	NA	1.658749733	1	0	0.341250267	2	0	0.658749733	unphased	1.110975025	1.110975025	1	0	0.99625	0.00375	0	2	2.33E-13	1	1	1	NA	NA	NA	NA
1351289	1206646737	PD9774b	2	230006475	G	T	PID1	CCDS2471.1	r.?	-	-	intronic	33	0	0	45	4	8.888888889	0	0	NA	0	0	NA	1.658749733	1	0	0.341250267	2	0	0.658749733	unphased	0.543143345	0.824506362	0.658749733	0.00125	0.99875	0	0	2	7.91E-05	1	1	1	NA	NA	NA	NA
1351289	1206647138	PD9774b	2	234133233	C	T	ATG16L1	ENST00000431917	r.?	-	-	intronic	41	0	0	63	5	7.936507937	0	0	NA	0	0	NA	1.658749733	1	0	0.341250267	2	0	0.658749733	unphased	0.484949416	0.736166394	0.658749733	0	1	0	0	2	1.73E-05	1	1	1	NA	NA	NA	NA
1351289	1206647172	PD9774b	2	234454592	C	T	USP40	CCDS46547.1	r.?	-	-	intronic	22	0	0	67	17	25.37313433	0	0	NA	0	0	NA	1.658749733	1	0	0.341250267	2	0	0.658749733	unphased	1.55039052	0.934674164	1.658749733	0	1	0	0	2	2.03E-24	1	1	1	NA	NA	NA	NA
1351289	1206647219	PD9774b	2	235106084	C	T	-	-	-	-	-	-	31	0	0	51	9	17.64705882	0	0	NA	0	0	NA	1.658749733	1	0	0.341250267	2	0	0.658749733	unphased	1.078299289	1.078299289	1	0	1	0	0	2	4.92E-12	1	1	1	NA	NA	NA	NA
1351289	1206648058	PD9774b	20	850880	A	T	ANGPT4	CCDS13009.1	r.?	-	-	downstream	34	0	0	39	9	23.07692308	2	0	0	0	0	NA	0.828633896	0	0	0.171366104	1	0	0.828633896	unphased	1.218518492	1.218518492	1	0	1	0	0	2	3.62E-13	1	1	1	NA	NA	NA	NA
1351289	1206648085	PD9774b	20	1220235	G	T	RAD21L1	CCDS46568.1	r.?	-	-	intronic	44	0	0	57	10	17.54385965	0	0	NA	0	0	NA	0.828633896	0	0	0.171366104	1	0	0.828633896	unphased	0.926359088	0.926359088	1	0.0025	0.9975	0	0	2	3.40E-13	1	1	1	NA	NA	NA	NA
1351289	1206648114	PD9774b	20	1430158	C	T	NSFL1C	CCDS13015.1	r.?	-	-	intronic	41	0	0	52	11	21.15384615	0	0	NA	0	0	NA	0.828633896	0	0	0.171366104	1	0	0.828633896	unphased	1.116975284	1.116975284	1	0	1	0	0	2	2.44E-15	1	1	1	NA	NA	NA	NA
1351289	1206648421	PD9774b	20	4457665	C	T	-	-	-	-	-	-	34	0	0	50	7	14	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.903225806	0.903225806	1	0	0.99875	0.00125	0	2	6.46E-09	1	1	1	NA	NA	NA	NA
1351289	1206648447	PD9774b	20	4851602	G	T	SLC23A2	CCDS13085.1	r.?	-	-	intronic	41	0	0	71	5	7.042253521	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.454338937	0.454338937	1	0.01875	0.98125	0	0	2	3.09E-05	1	1	1	NA	NA	NA	NA
1351289	1206648517	PD9774b	20	5550647	A	T	GPCPD1	CCDS13090.1	r.?	-	-	intronic	36	0	0	62	7	11.29032258	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.728407908	0.728407908	1	0	1	0	0	2	3.02E-08	1	1	1	NA	NA	NA	NA
1351289	1206648580	PD9774b	20	6165084	A	T	-	-	-	-	-	-	28	0	0	58	9	15.51724138	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.001112347	1.001112347	1	0.00125	0.99875	0	0	2	1.67E-11	1	1	1	NA	NA	NA	NA
1351289	1206648604	PD9774b	20	6508842	G	T	-	-	-	-	-	-	33	0	0	49	5	10.20408163	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.658327847	0.658327847	1	0.00125	0.99875	0	0	2	4.96E-06	1	1	1	NA	NA	NA	NA
1351289	1206648640	PD9774b	20	7016577	C	T	-	-	-	-	-	-	27	0	0	50	9	18	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.161290323	1.161290323	1	0.00125	0.9975	0.00125	0	2	4.07E-12	1	1	1	NA	NA	NA	NA
1351289	1206648657	PD9774b	20	7255804	A	T	-	-	-	-	-	-	46	0	0	57	4	7.01754386	0	0	NA	2	2	100	2	1	1	1	NA	NA	NA	unphased	0.452744765	0.452744765	1	0.01375	0.98625	0	0	2	0.000199821	1	2.50E-05	1	NA	NA	NA	NA
1351289	1206648684	PD9774b	20	7631906	C	T	-	-	-	-	-	-	36	0	0	63	11	17.46031746	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.126472094	1.126472094	1	0	0.99875	0.00125	0	2	2.37E-14	1	1	1	NA	NA	NA	NA
1351289	1206648732	PD9774b	20	8159359	C	T	PLCB1	CCDS13103.1	r.?	-	-	intronic	31	0	0	48	6	12.5	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.806451613	0.806451613	1	0.00375	0.995	0.00125	0	2	1.60E-07	1	1	1	NA	NA	NA	NA
1351289	1206648953	PD9774b	20	10771870	A	T	-	-	-	-	-	-	39	0	0	69	5	7.246376812	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.467508181	0.467508181	1	0.0175	0.9825	0	0	2	2.69E-05	1	1	1	NA	NA	NA	NA
1351289	1206648954	PD9774b	20	10774169	G	T	-	-	-	-	-	-	33	0	0	43	4	9.302325581	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.600150038	0.600150038	1	0.00125	0.99875	0	0	2	6.60E-05	1	1	1	NA	NA	NA	NA
1351289	1206649002	PD9774b	20	11459519	A	T	-	-	-	-	-	-	41	0	0	50	5	10	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.64516129	0.64516129	1	0.00125	0.99875	0	0	2	5.49E-06	1	1	1	NA	NA	NA	NA
1351289	1206649104	PD9774b	20	12742216	G	T	-	-	-	-	-	-	33	0	0	62	8	12.90322581	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.832466181	0.832466181	1	0.0025	0.9975	0	0	2	1.04E-09	1	1	1	NA	NA	NA	NA
1351289	1206649311	PD9774b	20	15396895	A	T	MACROD2	CCDS13120.2	r.?	-	-	intronic	49	0	0	51	5	9.803921569	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.632511069	0.632511069	1	0.0025	0.9975	0	0	2	6.06E-06	1	1	1	NA	NA	NA	NA
1351289	1206649635	PD9774b	20	19217699	G	T	SLC24A3	CCDS13140.1	r.?	-	-	intronic	27	0	0	34	5	14.70588235	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.948766603	0.948766603	1	0.00375	0.99625	0	0	2	7.71E-07	1	1	1	NA	NA	NA	NA
1351289	1206649754	PD9774b	20	20502152	G	T	RALGAPA2	CCDS46584.1	r.?	-	-	intronic	32	0	0	44	9	20.45454545	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.319648094	1.319648094	1	0	0.995	0.005	0	2	1.18E-12	1	1	1	NA	NA	NA	NA
1351289	1206649859	PD9774b	20	22283856	C	T	-	-	-	-	-	-	31	0	0	54	9	16.66666667	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.075268817	1.075268817	1	0	1	0	0	2	8.48E-12	1	1	1	NA	NA	NA	NA
1351289	1206649942	PD9774b	20	23575003	G	T	-	-	-	-	-	-	19	1	5.263157895	25	4	16	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.032258065	1.032258065	1	0.005	0.99375	0.00125	0	2	7.27E-06	0.090843738	1	1	NA	NA	NA	NA
1351289	1206649968	PD9774b	20	23947179	C	T	-	-	-	-	-	-	34	0	0	50	4	8	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.516129032	0.516129032	1	0.0025	0.9975	0	0	2	0.000119787	1	1	1	NA	NA	NA	NA
1351289	1206650060	PD9774b	20	24785689	C	T	-	-	-	-	-	-	40	0	0	50	6	12	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.774193548	0.774193548	1	0.00125	0.99875	0	0	2	2.06E-07	1	1	1	NA	NA	NA	NA
1351289	1206652215	PD9774b	20	29423748	G	T	-	-	-	-	-	-	55	0	0	67	7	10.44776119	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.674049109	0.674049109	1	0.00375	0.99625	0	0	2	5.23E-08	1	1	1	NA	NA	NA	NA
1351289	1206655181	PD9774b	20	29959063	G	T	DEFB118	CCDS13177.1	r.?	-	-	intronic	29	0	0	40	4	10	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.64516129	0.64516129	1	0.00875	0.99125	0	0	2	4.95E-05	1	1	1	NA	NA	NA	NA
1351289	1206655344	PD9774b	20	31446578	A	T	EFCAB8	CCDS46588.1	r.?	-	-	upstream	37	0	0	47	10	21.27659574	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.372683596	1.372683596	1	0	0.99375	0.00625	0	2	4.27E-14	1	1	1	NA	NA	NA	NA
1351289	1206655421	PD9774b	20	32514529	G	T	-	-	-	-	-	-	43	0	0	63	9	14.28571429	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.921658986	0.921658986	1	0	1	0	0	2	3.62E-11	1	1	1	NA	NA	NA	NA
1351289	1206655506	PD9774b	20	33475949	G	T	ACSS2	CCDS13243.1	r.?	-	-	intronic	32	0	0	61	10	16.39344262	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.05764146	1.05764146	1	0	0.9975	0.0025	0	2	6.98E-13	1	1	1	NA	NA	NA	NA
1351289	1206655519	PD9774b	20	33613501	C	T	TRPC4AP	CCDS13246.1	r.?	-	-	intronic	21	0	0	49	9	18.36734694	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.184990125	1.184990125	1	0.00125	0.9975	0.00125	0	2	3.35E-12	1	1	1	NA	NA	NA	NA
1351289	1206655815	PD9774b	20	37217670	G	T	ADIG	ENST00000416116	r.?	-	-	downstream	38	0	0	44	10	22.72727273	0	0	NA	0	0	NA	0.790269495	0	0	0.209730505	1	0	0.790269495	unphased	1.191336909	1.191336909	1	0	0.995	0.005	0	2	2.08E-14	1	1	1	NA	NA	NA	NA
1351289	1206656101	PD9774b	20	42154347	G	T	L3MBTL	CCDS46602.1	r.?	-	-	intronic	30	0	0	40	8	20	0	0	NA	0	0	NA	0.790269495	0	0	0.209730505	1	0	0.790269495	unphased	1.04837648	1.04837648	1	0.00125	0.99875	0	0	2	2.61E-11	1	1	1	NA	NA	NA	NA
1351289	1206657192	PD9774b	20	53687219	G	T	-	-	-	-	-	-	40	0	0	66	5	7.575757576	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.488758553	0.488758553	1	0.00625	0.99375	0	0	2	2.17E-05	1	1	1	NA	NA	NA	NA
1351289	1206657228	PD9774b	20	54233793	G	T	-	-	-	-	-	-	36	0	0	57	6	10.52631579	181	0	0	172	6	3.488372093	2	1	1	1	NA	NA	NA	unphased	0.679117148	0.679117148	1	0.00375	0.99625	0	0	2	4.56E-07	1	0.000253594	1	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206657506	PD9774b	20	57913834	G	T	-	-	-	-	-	-	31	0	0	40	4	10	0	0	NA	0	0	NA	1.438482126	1	0	0.561517874	1	1	0.438482126	unphased	0.589009503	1.343291935	0.438482126	0.00125	0.9975	0.00125	0	2	4.95E-05	1	1	1	NA	NA	NA	NA
1351289	1206657575	PD9774b	20	58817118	G	T	-	-	-	-	-	-	41	0	0	71	8	11.26760563	0	0	NA	0	0	NA	1.438482126	1	0	0.561517874	1	1	0.438482126	unphased	0.663672679	0.663672679	1	0.005	0.995	0	0	2	3.14E-09	1	1	1	NA	NA	NA	NA
1351289	1206657612	PD9774b	20	59424670	A	T	ENSG00000237240	ENST00000456299	r.?	-	-	intronic	35	0	0	66	7	10.60606061	0	0	NA	0	0	NA	1.438482126	1	0	0.561517874	1	1	0.438482126	unphased	0.624707049	0.624707049	1	0.00875	0.99125	0	0	2	4.70E-08	1	1	1	NA	NA	NA	NA
1351289	1206657672	PD9774b	20	60206299	G	T	CDH4	CCDS13488.1	r.?	-	-	intronic	35	0	0	45	10	22.22222222	0	0	NA	0	0	NA	1.438482126	1	0	0.561517874	1	1	0.438482126	unphased	1.308910006	1.308910006	1	0	0.9975	0.0025	0	2	2.66E-14	1	1	1	NA	NA	NA	NA
1351289	1206657731	PD9774b	20	60696012	A	T	LSM14B	CCDS46626.1	r.?	-	-	upstream	26	0	0	36	3	8.333333333	0	0	NA	0	0	NA	1.438482126	1	0	0.561517874	1	1	0.438482126	unphased	0.490841252	1.119409946	0.438482126	0.00125	0.99875	0	0	2	0.000788827	1	1	1	NA	NA	NA	NA
1351289	1206665936	PD9774b	21	10487384	G	T	-	-	-	-	-	-	75	0	0	111	6	5.405405405	0	0	NA	0	0	NA	2.499191854	1	1	0.500808146	2	1	0.499191854	unphased	0.375719176	0.752654862	0.499191854	0.00375	0.99625	0	0	2	2.26E-05	1	1	1	NA	NA	NA	NA
1351289	1206672561	PD9774b	21	16153641	C	T	-	-	-	-	-	-	35	0	0	50	7	14	0	0	NA	0	0	NA	2.499191854	1	1	0.500808146	2	1	0.499191854	unphased	0.973112666	0.973112666	1	0.0025	0.9975	0	0	2	6.46E-09	1	1	1	NA	NA	NA	NA
1351289	1206672608	PD9774b	21	16553507	C	T	-	-	-	-	-	-	23	0	0	42	11	26.19047619	0	0	NA	0	0	NA	2.499191854	1	1	0.500808146	2	1	0.499191854	unphased	1.820448865	1.214286791	1.499191854	0.00125	0.995	0.00375	0	2	1.81E-16	1	1	1	NA	NA	NA	NA
1351289	1206672629	PD9774b	21	16960500	C	T	-	-	-	-	-	-	46	0	0	69	15	21.73913043	0	0	NA	0	0	NA	2.499191854	1	1	0.500808146	2	1	0.499191854	unphased	1.511044512	1.511044512	1	0	0.99	0.01	0	2	1.34E-20	1	1	1	NA	NA	NA	NA
1351289	1206672791	PD9774b	21	18618148	A	T	-	-	-	-	-	-	39	0	0	65	19	29.23076923	0	0	NA	0	0	NA	2.499191854	1	1	0.500808146	2	1	0.499191854	unphased	2.031773698	1.355245957	1.499191854	0	0.995	0.005	0	2	1.89E-28	1	1	1	NA	NA	NA	NA
1351289	1206672801	PD9774b	21	18673646	A	T	-	-	-	-	-	-	35	0	0	59	9	15.25423729	0	0	NA	0	0	NA	2.499191854	1	1	0.500808146	2	1	0.499191854	unphased	1.060292251	1.060292251	1	0	1	0	0	2	1.96E-11	1	1	1	NA	NA	NA	NA
1351289	1206672901	PD9774b	21	19534339	C	T	CHODL	ENST00000400128	r.?	-	-	intronic	38	0	0	57	11	19.29824561	0	0	NA	0	0	NA	2.499191854	1	1	0.500808146	2	1	0.499191854	unphased	1.341383374	1.341383374	1	0	0.99375	0.00625	0	2	7.29E-15	1	1	1	NA	NA	NA	NA
1351289	1206673004	PD9774b	21	20805876	G	T	-	-	-	-	-	-	38	0	0	58	9	15.51724138	0	0	NA	0	0	NA	2.499191854	1	1	0.500808146	2	1	0.499191854	unphased	1.078573152	1.078573152	1	0	0.99875	0.00125	0	2	1.67E-11	1	1	1	NA	NA	NA	NA
1351289	1206673021	PD9774b	21	20961158	G	T	-	-	-	-	-	-	34	0	0	55	7	12.72727273	0	0	NA	0	0	NA	2.499191854	1	1	0.500808146	2	1	0.499191854	unphased	0.884647878	0.884647878	1	0	0.99875	0.00125	0	2	1.28E-08	1	1	1	NA	NA	NA	NA
1351289	1206673073	PD9774b	21	21466865	A	T	-	-	-	-	-	-	33	0	0	71	9	12.67605634	0	0	NA	0	0	NA	2.499191854	1	1	0.500808146	2	1	0.499191854	unphased	0.881087927	0.881087927	1	0.00375	0.995	0.00125	0	2	1.10E-10	1	1	1	NA	NA	NA	NA
1351289	1206673304	PD9774b	21	23561559	C	T	-	-	-	-	-	-	37	0	0	57	8	14.03508772	0	0	NA	0	0	NA	2.499191854	1	1	0.500808146	2	1	0.499191854	unphased	0.975551545	0.975551545	1	0.00125	0.99875	0	0	2	5.19E-10	1	1	1	NA	NA	NA	NA
1351289	1206673330	PD9774b	21	23747408	G	T	-	-	-	-	-	-	34	0	0	60	9	15	0	0	NA	0	0	NA	2.499191854	1	1	0.500808146	2	1	0.499191854	unphased	1.042620714	1.042620714	1	0.00125	0.9975	0.00125	0	2	2.29E-11	1	1	1	NA	NA	NA	NA
1351289	1206673398	PD9774b	21	24273621	C	T	-	-	-	-	-	-	38	0	0	49	5	10.20408163	0	0	NA	0	0	NA	2.499191854	1	1	0.500808146	2	1	0.499191854	unphased	0.709265792	0.709265792	1	0.0025	0.9975	0	0	2	4.96E-06	1	1	1	NA	NA	NA	NA
1351289	1206673520	PD9774b	21	25427114	C	T	-	-	-	-	-	-	42	0	0	66	7	10.60606061	0	0	NA	0	0	NA	2.499191854	1	1	0.500808146	2	1	0.499191854	unphased	0.737206565	0.737206565	1	0	0.99875	0.00125	0	2	4.70E-08	1	1	1	NA	NA	NA	NA
1351289	1206673615	PD9774b	21	26431362	C	T	-	-	-	-	-	-	24	0	0	59	10	16.94915254	0	0	NA	0	0	NA	2.499191854	1	1	0.500808146	2	1	0.499191854	unphased	1.178102501	1.178102501	1	0	0.99875	0.00125	0	2	4.91E-13	1	1	1	NA	NA	NA	NA
1351289	1206673660	PD9774b	21	27052870	C	T	JAM2	CCDS42911.1	r.?	-	-	intronic	38	0	0	48	7	14.58333333	0	0	NA	0	0	NA	1.797718639	1	0	0.202281361	1	1	0.797718639	unphased	0.91136085	0.91136085	1	0	1	0	0	2	4.81E-09	1	1	1	NA	NA	NA	NA
1351289	1206673764	PD9774b	21	28371300	C	T	-	-	-	-	-	-	37	0	0	56	8	14.28571429	0	0	NA	0	0	NA	1.797718639	1	0	0.202281361	1	1	0.797718639	unphased	0.892761649	0.892761649	1	0	1	0	0	2	4.48E-10	1	1	1	NA	NA	NA	NA
1351289	1206673993	PD9774b	21	30787113	C	T	BACH1	ENST00000422809	r.?	-	-	intronic	37	0	0	54	7	12.96296296	0	0	NA	0	0	NA	1.797718639	1	0	0.202281361	1	1	0.797718639	unphased	0.810098533	1.015519124	0.797718639	0.00125	0.99625	0.0025	0	2	1.13E-08	1	1	1	NA	NA	NA	NA
1351289	1206674043	PD9774b	21	31446663	G	T	-	-	-	-	-	-	41	0	0	56	4	7.142857143	0	0	NA	0	0	NA	1.797718639	1	0	0.202281361	1	1	0.797718639	unphased	0.446380824	0.559571762	0.797718639	0.0025	0.9975	0	0	2	0.000186538	1	1	1	NA	NA	NA	NA
1351289	1206674072	PD9774b	21	31795822	A	T	KRTAP13-3	CCDS13591.1	r.?	-	-	downstream	30	0	0	65	8	12.30769231	0	0	NA	0	0	NA	1.797718639	1	0	0.202281361	1	1	0.797718639	unphased	0.769148497	0.96418519	0.797718639	0	1	0	0	2	1.53E-09	1	1	1	NA	NA	NA	NA
1351289	1206674075	PD9774b	21	31844715	C	T	-	-	-	-	-	-	35	0	0	53	7	13.20754717	0	0	NA	0	0	NA	1.797718639	1	0	0.202281361	1	1	0.797718639	unphased	0.825383411	1.034679862	0.797718639	0	0.9975	0.0025	0	2	9.85E-09	1	1	1	NA	NA	NA	NA
1351289	1206674402	PD9774b	21	34525924	C	T	-	-	-	-	-	-	29	0	0	40	7	17.5	0	0	NA	0	0	NA	1.797718639	1	0	0.202281361	1	1	0.797718639	unphased	1.09363302	1.09363302	1	0	0.9975	0.0025	0	2	1.26E-09	1	1	1	NA	NA	NA	NA
1351289	1206674735	PD9774b	21	37875072	C	T	CLDN14	CCDS13645.1	r.?	-	-	intronic	36	0	0	63	5	7.936507937	0	0	NA	0	0	NA	2.608470272	1	1	0.391529728	2	1	0.608470272	unphased	0.560324062	0.920873356	0.608470272	0.00125	0.9975	0.00125	0	2	1.73E-05	1	1	1	NA	NA	NA	NA
1351289	1206675056	PD9774b	21	41176115	C	T	IGSF5	CCDS33562.1	r.?	-	-	downstream	49	0	0	56	15	26.78571429	0	0	NA	0	0	NA	2.608470272	1	1	0.391529728	2	1	0.608470272	unphased	1.891093708	1.175709455	1.608470272	0	1	0	0	2	4.09E-22	1	1	1	NA	NA	NA	NA
1351289	1206675422	PD9774b	21	44865074	G	T	-	-	-	-	-	-	24	0	0	27	6	22.22222222	0	0	NA	0	0	NA	0.13073868	0	0	0.86926132	1	0	0.13073868	unphased	1.018300352	1.018300352	1	0	0.99875	0.00125	0	2	4.23E-09	1	1	1	NA	NA	NA	NA
1351289	1206675433	PD9774b	21	44942477	C	T	-	-	-	-	-	-	32	0	0	55	6	10.90909091	0	0	NA	0	0	NA	0.13073868	0	0	0.86926132	1	0	0.13073868	unphased	0.4998929	0.4998929	1	0.015	0.985	0	0	2	3.67E-07	1	1	1	NA	NA	NA	NA
1351289	1206675445	PD9774b	21	45036772	A	T	HSF2BP	CCDS13697.1	r.?	-	-	intronic	45	0	0	52	8	15.38461538	0	0	NA	0	0	NA	0.13073868	0	0	0.86926132	1	0	0.13073868	unphased	0.704977167	0.704977167	1	0.0025	0.9975	0	0	2	2.42E-10	1	1	1	NA	NA	NA	NA
1351289	1206675532	PD9774b	21	46055912	A	T	C21orf29	CCDS13712.1	r.?	-	-	intronic	35	0	0	52	7	13.46153846	0	0	NA	0	0	NA	0.13073868	0	0	0.86926132	1	0	0.13073868	unphased	0.616855021	0.616855021	1	0.005	0.995	0	0	2	8.58E-09	1	1	1	NA	NA	NA	NA
1351289	1206676020	PD9774b	22	16549576	C	T	-	-	-	-	-	-	20	0	0	28	5	17.85714286	0	0	NA	0	0	NA	0.677534538	0	0	0.322465462	1	0	0.677534538	unphased	0.915919186	0.915919186	1	0.0025	0.9975	0	0	2	2.79E-07	1	1	1	NA	NA	NA	NA
1351289	1206676839	PD9774b	22	17360154	C	T	-	-	-	-	-	-	35	0	0	53	10	18.86792453	0	0	NA	1	0	0	0.677534538	0	0	0.322465462	1	0	0.677534538	unphased	0.967763668	0.967763668	1	0	1	0	0	2	1.57E-13	1	1	1	NA	NA	NA	NA
1351289	1206677141	PD9774b	22	17752530	C	T	-	-	-	-	-	-	34	0	0	42	5	11.9047619	0	0	NA	0	0	NA	0.677534538	0	0	0.322465462	1	0	0.677534538	unphased	0.610612791	0.901227548	0.677534538	0.00125	0.99875	0	0	2	2.28E-06	1	1	1	NA	NA	NA	NA
1351289	1206678159	PD9774b	22	24519911	G	T	CABIN1	CCDS13823.1	r.?	-	-	intronic	29	0	0	40	6	15	0	0	NA	0	0	NA	0.677534538	0	0	0.322465462	1	0	0.677534538	unphased	0.769372116	1.13554671	0.677534538	0.0025	0.99625	0.00125	0	2	5.18E-08	1	1	1	NA	NA	NA	NA
1351289	1206678317	PD9774b	22	25259426	C	T	SGSM1	CCDS46675.1	r.?	-	-	intronic	29	0	0	60	7	11.66666667	0	0	NA	0	0	NA	0.677534538	0	0	0.322465462	1	0	0.677534538	unphased	0.598400535	0.883202997	0.677534538	0	1	0	0	2	2.39E-08	1	1	1	NA	NA	NA	NA
1351289	1206678441	PD9774b	22	26730265	A	T	SEZ6L	CCDS13833.1	r.?	-	-	intronic	34	0	0	36	4	11.11111111	0	0	NA	0	0	NA	0.677534538	0	0	0.322465462	1	0	0.677534538	unphased	0.569905271	0.841145711	0.677534538	0.005	0.99375	0.00125	0	2	3.24E-05	1	1	1	NA	NA	NA	NA
1351289	1206678463	PD9774b	22	26895794	A	T	TFIP11	CCDS13838.1	r.?	-	-	intronic	36	0	0	44	9	20.45454545	0	0	NA	0	0	NA	0.677534538	0	0	0.322465462	1	0	0.677534538	unphased	1.049143795	1.049143795	1	0	0.99875	0.00125	0	2	1.18E-12	1	1	1	NA	NA	NA	NA
1351289	1206678701	PD9774b	22	29635281	A	T	EMID1	CCDS33630.1	r.?	-	-	intronic	30	0	0	66	5	7.575757576	0	0	NA	0	0	NA	0.677534538	0	0	0.322465462	1	0	0.677534538	unphased	0.388571776	0.57350844	0.677534538	0.00875	0.99125	0	0	2	2.17E-05	1	1	1	NA	NA	NA	NA
1351289	1206678787	PD9774b	22	30521612	C	T	HORMAD2	CCDS46683.1	r.?	-	-	intronic	32	0	0	61	9	14.75409836	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.951877314	0.951877314	1	0	1	0	0	2	2.68E-11	1	1	1	NA	NA	NA	NA
1351289	1206678802	PD9774b	22	30844148	G	T	SEC14L3	ENST00000403066	r.2272c>a	c.?	p.?	3'UTR variant	25	0	0	48	8	16.66666667	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.075268817	1.075268817	1	0.00125	0.9975	0.00125	0	2	1.23E-10	1	1	1	NA	NA	NA	NA
1351289	1206678807	PD9774b	22	30906301	G	T	SEC14L4	CCDS13878.1	r.?	-	-	upstream	27	0	0	40	7	17.5	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.129032258	1.129032258	1	0.00125	0.99875	0	0	2	1.26E-09	1	1	1	NA	NA	NA	NA
1351289	1206678957	PD9774b	22	32283657	C	T	DEPDC5	CCDS43006.1	r.?	-	-	intronic	31	0	0	51	7	13.7254902	0	0	NA	0	0	NA	0.736598606	0	0	0.263401394	1	0	0.736598606	unphased	0.712107462	0.966751031	0.736598606	0	0.99875	0.00125	0	2	7.46E-09	1	1	1	NA	NA	NA	NA
1351289	1206679133	PD9774b	22	34495534	C	T	-	-	-	-	-	-	36	0	0	57	8	14.03508772	0	0	NA	0	0	NA	0.736598606	0	0	0.263401394	1	0	0.736598606	unphased	0.728170036	0.988557445	0.736598606	0.00125	0.99875	0	0	2	5.19E-10	1	1	1	NA	NA	NA	NA
1351289	1206679171	PD9774b	22	35026505	A	T	-	-	-	-	-	-	36	0	0	48	9	18.75	0	0	NA	0	0	NA	0.736598606	0	0	0.263401394	1	0	0.736598606	unphased	0.972789658	0.972789658	1	0.00125	0.99875	0	0	2	2.75E-12	1	1	1	NA	NA	NA	NA
1351289	1206679363	PD9774b	22	37138073	A	T	-	-	-	-	-	-	35	0	0	50	4	8	0	0	NA	0	0	NA	0.736598606	0	0	0.263401394	1	0	0.736598606	unphased	0.415056921	0.563477744	0.736598606	0.01	0.99	0	0	2	0.000119787	1	1	1	NA	NA	NA	NA
1351289	1206680030	PD9774b	22	43810824	A	T	MPPED1	CCDS46723.1	r.?	-	-	intronic	29	0	0	52	7	13.46153846	0	0	NA	0	0	NA	1.16591663	1	0	0.83408337	2	0	0.16591663	unphased	0.756205899	0.756205899	1	0	1	0	0	2	8.58E-09	1	1	1	NA	NA	NA	NA
1351289	1206680063	PD9774b	22	44207116	C	T	EFCAB6	CCDS14049.1	r.?	-	-	intronic	22	0	0	32	9	28.125	0	0	NA	0	0	NA	1.16591663	1	0	0.83408337	2	0	0.16591663	unphased	1.579930181	1.579930181	1	0	0.99	0.01	0	2	4.94E-14	1	1	1	NA	NA	NA	NA
1351289	1206680186	PD9774b	22	45518588	C	T	-	-	-	-	-	-	28	0	0	42	9	21.42857143	0	0	NA	0	0	NA	1.16591663	1	0	0.83408337	2	0	0.16591663	unphased	1.203756328	1.203756328	1	0	1	0	0	2	7.51E-13	1	1	1	NA	NA	NA	NA
1351289	1206680426	PD9774b	22	48050635	C	T	-	-	-	-	-	-	31	0	0	45	10	22.22222222	0	0	NA	0	0	NA	1.16591663	1	0	0.83408337	2	0	0.16591663	unphased	1.248339896	1.248339896	1	0	0.99875	0.00125	0	2	2.66E-14	1	1	1	NA	NA	NA	NA
1351289	1206680544	PD9774b	22	49276801	C	T	-	-	-	-	-	-	31	0	0	44	15	34.09090909	1	0	0	0	0	NA	1.16591663	1	0	0.83408337	2	0	0.16591663	unphased	1.915066886	1.642541875	1.16591663	0	0.96375	0.03625	0	2	6.12E-24	1	1	1	NA	NA	NA	NA
1351289	1206680594	PD9774b	22	49728475	A	T	-	-	-	-	-	-	37	0	0	49	9	18.36734694	0	0	NA	0	0	NA	1.16591663	1	0	0.83408337	2	0	0.16591663	unphased	1.031791139	1.031791139	1	0	0.9975	0.0025	0	2	3.35E-12	1	1	1	NA	NA	NA	NA
1351289	1206680653	PD9774b	22	50008898	C	T	C22orf34	ENST00000380976	r.?	-	-	downstream	29	0	0	56	13	23.21428571	0	0	NA	0	0	NA	1.16591663	1	0	0.83408337	2	0	0.16591663	unphased	1.304069356	1.304069356	1	0	0.99875	0.00125	0	2	1.89E-18	1	1	1	NA	NA	NA	NA
1351289	1206681364	PD9774b	3	5508036	G	T	-	-	-	-	-	-	32	0	0	46	9	19.56521739	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	1.035377878	1.035377878	1	0	0.99875	0.00125	0	2	1.82E-12	1	1	1	NA	NA	NA	NA
1351289	1206681434	PD9774b	3	6407410	C	T	-	-	-	-	-	-	37	0	0	45	6	13.33333333	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	0.70559085	0.839670761	0.840318471	0.00125	0.99875	0	0	2	1.08E-07	1	1	1	NA	NA	NA	NA
1351289	1206681458	PD9774b	3	6764926	C	T	-	-	-	-	-	-	34	0	0	45	9	20	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	1.058386275	1.058386275	1	0	0.99625	0.00375	0	2	1.47E-12	1	1	1	NA	NA	NA	NA
1351289	1206681488	PD9774b	3	7375313	G	T	GRM7	CCDS43042.1	r.?	-	-	intronic	33	0	0	49	10	20.40816327	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	1.079985995	1.079985995	1	0.00125	0.9975	0.00125	0	2	6.72E-14	1	1	1	NA	NA	NA	NA
1351289	1206681641	PD9774b	3	9333214	C	T	-	-	-	-	-	-	39	0	0	48	7	14.58333333	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	0.771739992	0.918389895	0.840318471	0.00125	0.9975	0.00125	0	2	4.81E-09	1	1	1	NA	NA	NA	NA
1351289	1206681781	PD9774b	3	11181773	C	T	HRH1	CCDS2604.1	r.?	-	-	intronic	31	0	0	37	7	18.91891892	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	1.001176206	1.001176206	1	0	0.99875	0.00125	0	2	7.05E-10	1	1	1	NA	NA	NA	NA
1351289	1206682162	PD9774b	3	15859645	C	T	ANKRD28	CCDS46769.1	r.?	-	-	intronic	38	0	0	51	6	11.76470588	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	0.622580162	0.740885966	0.840318471	0.00125	0.99875	0	0	2	2.32E-07	1	1	1	NA	NA	NA	NA
1351289	1206682260	PD9774b	3	17486827	C	T	TBC1D5	CCDS33714.1	r.?	-	-	intronic	33	0	0	52	8	15.38461538	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	0.814143288	0.968850878	0.840318471	0.00125	0.99875	0	0	2	2.42E-10	1	1	1	NA	NA	NA	NA
1351289	1206682359	PD9774b	3	19233207	C	T	KCNH8	CCDS2632.1	r.?	-	-	intronic	29	0	0	34	7	20.58823529	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	1.089515283	1.089515283	1	0.00125	0.9975	0.00125	0	2	3.73E-10	1	1	1	NA	NA	NA	NA
1351289	1206682862	PD9774b	3	25966862	C	T	-	-	-	-	-	-	31	0	0	47	5	10.63829787	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	0.562971423	0.669950075	0.840318471	0.00375	0.99625	0	0	2	4.02E-06	1	1	1	NA	NA	NA	NA
1351289	1206683040	PD9774b	3	28571591	G	T	ZCWPW2	CCDS33723.1	r.?	-	-	downstream	27	0	0	36	4	11.11111111	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	0.587992375	0.699725634	0.840318471	0	1	0	0	2	3.24E-05	1	1	1	NA	NA	NA	NA
1351289	1206683077	PD9774b	3	29284763	A	T	-	-	-	-	-	-	56	0	0	46	5	10.86956522	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	0.575209932	0.684514207	0.840318471	0.005	0.995	0	0	2	3.61E-06	1	1	1	NA	NA	NA	NA
1351289	1206683207	PD9774b	3	31104517	A	T	-	-	-	-	-	-	53	0	0	52	14	26.92307692	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	1.424750755	1.424750755	1	0	0.99	0.01	0	2	9.04E-21	1	1	1	NA	NA	NA	NA
1351289	1206683258	PD9774b	3	31914716	A	T	OSBPL10	CCDS2651.1	r.?	-	-	intronic	32	0	0	48	4	8.333333333	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	0.440994281	0.524794226	0.840318471	0.00625	0.99375	0	0	2	0.000102016	1	1	1	NA	NA	NA	NA
1351289	1206683580	PD9774b	3	36379342	G	T	-	-	-	-	-	-	35	0	0	42	12	28.57142857	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	1.511980393	1.511980393	1	0	0.99125	0.00875	0	2	2.35E-18	1	1	1	NA	NA	NA	NA
1351289	1206684418	PD9774b	3	48272496	G	T	-	-	-	-	-	-	29	0	0	60	8	13.33333333	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	0.70559085	0.839670761	0.840318471	0	1	0	0	2	7.93E-10	1	1	1	NA	NA	NA	NA
1351289	1206684558	PD9774b	3	49624883	G	T	BSN	CCDS2800.1	r.?	-	-	intronic	34	0	0	39	7	17.94871795	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	0.949833836	0.949833836	1	0.00375	0.995	0.00125	0	2	1.04E-09	1	1	1	NA	NA	NA	NA
1351289	1206684602	PD9774b	3	50029660	C	T	RBM6	CCDS2809.1	r.?	-	-	intronic	30	0	0	61	6	9.836065574	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	0.52051784	0.61942925	0.840318471	0.00375	0.99625	0	0	2	6.85E-07	1	1	1	NA	NA	NA	NA
1351289	1206684736	PD9774b	3	52028347	A	T	RPL29	CCDS2845.1	r.?	-	-	intronic	42	0	0	51	10	19.60784314	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	1.037633603	1.037633603	1	0	0.99625	0.00375	0	2	1.04E-13	1	1	1	NA	NA	NA	NA
1351289	1206684837	PD9774b	3	53133775	C	T	RFT1	CCDS2869.1	r.?	-	-	intronic	49	0	0	53	11	20.75471698	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	1.09832538	1.09832538	1	0.00125	0.9975	0.00125	0	2	3.07E-15	1	1	1	NA	NA	NA	NA
1351289	1206685136	PD9774b	3	57352959	G	T	DNAH12	CCDS46857.1	r.?	-	-	intronic	34	0	0	48	8	16.66666667	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	0.881988562	1.049588451	0.840318471	0	1	0	0	2	1.23E-10	1	1	1	NA	NA	NA	NA
1351289	1206685721	PD9774b	3	65242760	G	T	-	-	-	-	-	-	34	0	0	44	9	20.45454545	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	1.082440508	1.082440508	1	0	0.9975	0.0025	0	2	1.18E-12	1	1	1	NA	NA	NA	NA
1351289	1206685841	PD9774b	3	67181774	C	T	-	-	-	-	-	-	31	0	0	48	5	10.41666667	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	0.551242851	0.655992782	0.840318471	0.0075	0.99125	0.00125	0	2	4.47E-06	1	1	1	NA	NA	NA	NA
1351289	1206685911	PD9774b	3	68713227	C	T	-	-	-	-	-	-	39	0	0	45	10	22.22222222	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	1.17598475	1.17598475	1	0	0.99875	0.00125	0	2	2.66E-14	1	1	1	NA	NA	NA	NA
1351289	1206689149	PD9774b	3	77976055	C	T	-	-	-	-	-	-	41	0	0	62	8	12.90322581	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	0.682829855	0.812584607	0.840318471	0.0025	0.9975	0	0	2	1.04E-09	1	1	1	NA	NA	NA	NA
1351289	1206689252	PD9774b	3	79350435	G	T	ROBO1	ENST00000464233	r.?	-	-	intronic	40	0	0	39	7	17.94871795	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	0.949833836	0.949833836	1	0	0.99875	0.00125	0	2	1.04E-09	1	1	1	NA	NA	NA	NA
1351289	1206689426	PD9774b	3	82408919	G	T	-	-	-	-	-	-	29	0	0	55	7	12.72727273	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	0.673518539	0.801503908	0.840318471	0.00125	0.99875	0	0	2	1.28E-08	1	1	1	NA	NA	NA	NA
1351289	1206689490	PD9774b	3	83407482	C	T	-	-	-	-	-	-	37	0	0	38	7	18.42105263	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	0.974829464	0.974829464	1	0	1	0	0	2	8.61E-10	1	1	1	NA	NA	NA	NA
1351289	1206689567	PD9774b	3	84544456	A	T	-	-	-	-	-	-	31	0	0	50	7	14	0	0	NA	1	0	0	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	0.740870392	0.881654299	0.840318471	0.00375	0.99625	0	0	2	6.46E-09	1	1	1	NA	NA	NA	NA
1351289	1206689593	PD9774b	3	84816380	A	T	-	-	-	-	-	-	37	0	0	42	11	26.19047619	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	1.385982027	1.385982027	1	0	0.99375	0.00625	0	2	1.81E-16	1	1	1	NA	NA	NA	NA
1351289	1206689689	PD9774b	3	85942585	G	T	CADM2	CCDS33792.1	r.?	-	-	intronic	45	0	0	77	6	7.792207792	0	0	NA	0	0	NA	0.840318471	0	0	0.159681529	1	0	0.840318471	unphased	0.412358289	0.490716678	0.840318471	0.015	0.985	0	0	2	2.73E-06	1	1	1	NA	NA	NA	NA
1351289	1206689760	PD9774b	3	87062338	G	T	-	-	-	-	-	-	31	0	0	70	9	12.85714286	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.829493088	0.829493088	1	0	1	0	0	2	9.65E-11	1	1	1	NA	NA	NA	NA
1351289	1206689761	PD9774b	3	87062339	C	T	-	-	-	-	-	-	32	0	0	72	10	13.88888889	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.896057348	0.896057348	1	0	1	0	0	2	3.95E-12	1	1	1	NA	NA	NA	NA
1351289	1206689766	PD9774b	3	87108585	A	T	-	-	-	-	-	-	31	0	0	41	7	17.07317073	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.101494886	1.101494886	1	0	1	0	0	2	1.51E-09	1	1	1	NA	NA	NA	NA
1351289	1206689770	PD9774b	3	87128142	C	T	-	-	-	-	-	-	26	0	0	52	5	9.615384615	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.620347395	0.620347395	1	0	1	0	0	2	6.68E-06	1	1	1	NA	NA	NA	NA
1351289	1206689798	PD9774b	3	87498436	G	T	-	-	-	-	-	-	40	0	0	56	4	7.142857143	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.460829493	0.460829493	1	0.00875	0.99125	0	0	2	0.000186538	1	1	1	NA	NA	NA	NA
1351289	1206689898	PD9774b	3	88625940	C	T	-	-	-	-	-	-	38	0	0	59	5	8.474576271	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.546746856	0.546746856	1	0	1	0	0	2	1.25E-05	1	1	1	NA	NA	NA	NA
1351289	1206689988	PD9774b	3	89755883	G	T	-	-	-	-	-	-	33	0	0	61	8	13.1147541	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.846113168	0.846113168	1	0.00125	0.99875	0	0	2	9.09E-10	1	1	1	NA	NA	NA	NA
1351289	1206690561	PD9774b	3	93638103	C	T	PROS1	CCDS2923.1	r.?	-	-	intronic	44	0	0	66	11	16.66666667	2	0	0	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.075268817	1.075268817	1	0	1	0	0	2	4.07E-14	1	1	1	NA	NA	NA	NA
1351289	1206690739	PD9774b	3	95780333	G	T	-	-	-	-	-	-	26	0	0	53	9	16.98113208	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.095556908	1.095556908	1	0	1	0	0	2	7.10E-12	1	1	1	NA	NA	NA	NA
1351289	1206690957	PD9774b	3	98754069	G	T	-	-	-	-	-	-	30	0	0	37	5	13.51351351	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.871839582	0.871839582	1	0	1	0	0	2	1.19E-06	1	1	1	NA	NA	NA	NA
1351289	1206691327	PD9774b	3	103655638	C	T	-	-	-	-	-	-	37	0	0	60	5	8.333333333	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.537634409	0.537634409	1	0.0125	0.9875	0	0	2	1.36E-05	1	1	1	NA	NA	NA	NA
1351289	1206691333	PD9774b	3	103744452	C	T	-	-	-	-	-	-	23	0	0	31	6	19.35483871	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.248699272	1.248699272	1	0.0025	0.9975	0	0	2	1.03E-08	1	1	1	NA	NA	NA	NA
1351289	1206691387	PD9774b	3	104321604	A	T	-	-	-	-	-	-	36	0	0	52	7	13.46153846	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.868486352	0.868486352	1	0.00125	0.99875	0	0	2	8.58E-09	1	1	1	NA	NA	NA	NA
1351289	1206691576	PD9774b	3	106420567	C	T	-	-	-	-	-	-	38	0	0	60	7	11.66666667	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	0.647703048	0.647703048	1	0.005	0.995	0	0	2	2.39E-08	1	1	1	NA	NA	NA	NA
1351289	1206691968	PD9774b	3	111876500	C	T	SLC9A10	CCDS33817.1	r.?	-	-	intronic	31	0	0	43	7	16.27906977	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	0.903771695	0.903771695	1	0.00375	0.99625	0	0	2	2.15E-09	1	1	1	NA	NA	NA	NA
1351289	1206692040	PD9774b	3	112558156	A	T	CD200R1L	CCDS43131.1	r.?	-	-	intronic	38	0	0	59	10	16.94915254	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	0.940972951	0.940972951	1	0.00125	0.99875	0	0	2	4.91E-13	1	1	1	NA	NA	NA	NA
1351289	1206692375	PD9774b	3	116986827	G	T	-	-	-	-	-	-	35	0	0	45	8	17.77777778	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	0.986976073	0.986976073	1	0	0.99875	0.00125	0	2	7.14E-11	1	1	1	NA	NA	NA	NA
1351289	1206692406	PD9774b	3	117304753	G	T	-	-	-	-	-	-	38	0	0	67	14	20.89552239	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	1.16006516	1.16006516	1	0	1	0	0	2	4.66E-19	1	1	1	NA	NA	NA	NA
1351289	1206692464	PD9774b	3	118377809	G	T	-	-	-	-	-	-	40	0	0	39	5	12.82051282	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	0.711761591	0.711761591	1	0.00125	0.99875	0	0	2	1.56E-06	1	1	1	NA	NA	NA	NA
1351289	1206692890	PD9774b	3	124287686	A	T	KALRN	ENST00000360013	r.?	-	-	intronic	37	0	0	52	8	15.38461538	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	0.854113909	0.854113909	1	0.00125	0.99875	0	0	2	2.42E-10	1	1	1	NA	NA	NA	NA
1351289	1206693043	PD9774b	3	125643534	C	T	ALG1L	CCDS33840.1	r.?	-	-	downstream	31	0	0	40	7	17.5	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	0.971554572	0.971554572	1	0.00125	0.99875	0	0	2	1.26E-09	1	1	1	NA	NA	NA	NA
1351289	1206693080	PD9774b	3	126192071	C	T	ZXDC	CCDS43146.1	r.?	-	-	intronic	43	0	0	42	8	19.04761905	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	1.057474364	1.057474364	1	0.00375	0.995	0.00125	0	2	3.96E-11	1	1	1	NA	NA	NA	NA
1351289	1206693408	PD9774b	3	130075001	C	T	COL29A1	ENST00000312481	r.?	-	-	intronic	40	0	0	46	5	10.86956522	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	0.603450045	0.603450045	1	0.00375	0.99625	0	0	2	3.61E-06	1	1	1	NA	NA	NA	NA
1351289	1206693498	PD9774b	3	131489222	G	T	CPNE4	CCDS3072.1	r.?	-	-	intronic	30	0	0	54	10	18.51851852	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	1.028100076	1.028100076	1	0	1	0	0	2	1.91E-13	1	1	1	NA	NA	NA	NA
1351289	1206693900	PD9774b	3	137663694	A	T	-	-	-	-	-	-	32	0	0	53	4	7.547169811	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	0.418999276	0.418999276	1	0.01	0.99	0	0	2	0.000150502	1	1	1	NA	NA	NA	NA
1351289	1206693990	PD9774b	3	138574020	C	T	-	-	-	-	-	-	29	0	0	66	22	33.33333333	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	1.850580137	1.850580137	1	0	0.715	0.285	0	2	3.52E-34	1	1	1	NA	NA	NA	NA
1351289	1206694021	PD9774b	3	138968009	G	T	MRPS22	CCDS3107.1	r.?	-	-	intronic	30	0	0	73	19	26.02739726	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	1.444973531	1.444973531	1	0	0.99	0.01	0	2	2.35E-27	1	1	1	NA	NA	NA	NA
1351289	1206694079	PD9774b	3	139541591	A	T	-	-	-	-	-	-	26	0	0	71	9	12.67605634	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	0.703741742	0.703741742	1	0.00625	0.99375	0	0	2	1.10E-10	1	1	1	NA	NA	NA	NA
1351289	1206694117	PD9774b	3	140057338	A	T	CLSTN2	CCDS3112.1	r.?	-	-	intronic	28	0	0	66	11	16.66666667	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	0.925290068	0.925290068	1	0	0.99875	0.00125	0	2	4.07E-14	1	1	1	NA	NA	NA	NA
1351289	1206694118	PD9774b	3	140084025	G	T	CLSTN2	CCDS3112.1	r.?	-	-	intronic	32	0	0	55	12	21.81818182	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	1.211288817	1.211288817	1	0	0.9975	0.0025	0	2	8.78E-17	1	1	1	NA	NA	NA	NA
1351289	1206694191	PD9774b	3	141003922	G	T	ACPL2	CCDS3116.1	r.?	-	-	intronic	32	0	0	65	8	12.30769231	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	0.683291127	0.683291127	1	0.0075	0.9925	0	0	2	1.53E-09	1	1	1	NA	NA	NA	NA
1351289	1206694509	PD9774b	3	144216675	G	T	-	-	-	-	-	-	41	0	0	74	22	29.72972973	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	1.650517419	1.650517419	1	0	0.91875	0.08125	0	2	6.78E-33	1	1	1	NA	NA	NA	NA
1351289	1206694557	PD9774b	3	144884653	A	T	-	-	-	-	-	-	40	0	0	64	15	23.4375	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	1.301189159	1.301189159	1	0.00125	0.9975	0.00125	0	2	3.87E-21	1	1	1	NA	NA	NA	NA
1351289	1206694558	PD9774b	3	144884654	G	T	-	-	-	-	-	-	39	0	0	64	15	23.4375	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	1.301189159	1.301189159	1	0	0.99625	0.00375	0	2	3.87E-21	1	1	1	NA	NA	NA	NA
1351289	1206694650	PD9774b	3	145702269	G	T	-	-	-	-	-	-	33	0	0	69	17	24.63768116	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	1.367820101	1.367820101	1	0	1	0	0	2	3.56E-24	1	1	1	NA	NA	NA	NA
1351289	1206694684	PD9774b	3	146160369	A	T	PLSCR2	CCDS3134.1	r.?	-	-	intronic	40	0	0	69	4	5.797101449	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	0.321840024	0.321840024	1	0.0575	0.9425	0	0	2	0.000416985	1	1	1	NA	NA	NA	NA
1351289	1206694759	PD9774b	3	146972151	C	T	-	-	-	-	-	-	37	0	0	60	19	31.66666667	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	1.75805113	1.75805113	1	0	0.8825	0.1175	0	2	3.21E-29	1	1	1	NA	NA	NA	NA
1351289	1206694764	PD9774b	3	147018624	G	T	-	-	-	-	-	-	37	0	0	77	24	31.16883117	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	1.730412595	1.730412595	1	0	0.81625	0.18125	0.0025	2	2.53E-36	1	1	1	NA	NA	NA	NA
1351289	1206694832	PD9774b	3	148087747	A	T	-	-	-	-	-	-	41	0	0	60	25	41.66666667	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	2.313225171	2.313225171	1	0	0.0675	0.9275	0.005	3	1.31E-41	1	1	1	NA	NA	NA	NA
1351289	1206694913	PD9774b	3	148873983	C	T	HPS3	CCDS3140.1	r.?	-	-	intronic	38	0	0	80	8	10	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	0.555174041	0.555174041	1	0.01	0.99	0	0	2	8.22E-09	1	1	1	NA	NA	NA	NA
1351289	1206695022	PD9774b	3	149868820	A	T	-	-	-	-	-	-	25	0	0	68	10	14.70588235	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	0.816432413	0.816432413	1	0.00125	0.99875	0	0	2	2.18E-12	1	1	1	NA	NA	NA	NA
1351289	1206695055	PD9774b	3	150200654	C	T	-	-	-	-	-	-	53	0	0	76	22	28.94736842	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	1.60708275	1.60708275	1	0	0.93875	0.06125	0	2	1.34E-32	1	1	1	NA	NA	NA	NA
1351289	1206695060	PD9774b	3	150258365	A	T	SERP1	CCDS3150.1	r.?	-	-	downstream	41	0	0	82	4	4.87804878	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	0.270816605	0.270816605	1	0.12875	0.87125	0	0	2	0.000801325	1	1	1	NA	NA	NA	NA
1351289	1206695273	PD9774b	3	152388981	G	T	-	-	-	-	-	-	36	0	0	75	10	13.33333333	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	0.740232055	0.740232055	1	0.00625	0.99375	0	0	2	6.02E-12	1	1	1	NA	NA	NA	NA
1351289	1206695280	PD9774b	3	152435903	G	T	-	-	-	-	-	-	38	0	0	62	9	14.51612903	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	0.805897802	0.805897802	1	0.00125	0.99875	0	0	2	3.12E-11	1	1	1	NA	NA	NA	NA
1351289	1206695413	PD9774b	3	153343853	G	T	-	-	-	-	-	-	37	0	0	66	9	13.63636364	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	0.757055511	0.757055511	1	0.00125	0.99875	0	0	2	5.59E-11	1	1	1	NA	NA	NA	NA
1351289	1206695426	PD9774b	3	153553689	A	T	-	-	-	-	-	-	35	0	0	86	18	20.93023256	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	1.161992179	1.161992179	1	0	0.9975	0.0025	0	2	4.22E-24	1	1	1	NA	NA	NA	NA
1351289	1206695473	PD9774b	3	154193286	A	T	-	-	-	-	-	-	44	0	0	52	9	17.30769231	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	0.960878148	0.960878148	1	0.00125	0.99875	0	0	2	5.92E-12	1	1	1	NA	NA	NA	NA
1351289	1206695481	PD9774b	3	154228313	G	T	-	-	-	-	-	-	29	0	0	62	10	16.12903226	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	0.895442002	0.895442002	1	0	1	0	0	2	8.29E-13	1	1	1	NA	NA	NA	NA
1351289	1206695518	PD9774b	3	154898396	C	T	MME	CCDS3172.1	r.2521c>u	c.?	p.?	3'UTR variant	37	0	0	65	11	16.92307692	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	0.9395253	0.9395253	1	0.00125	0.99875	0	0	2	3.41E-14	1	1	1	NA	NA	NA	NA
1351289	1206695598	PD9774b	3	155782050	G	T	KCNAB1	ENST00000472028	r.?	-	-	intronic	29	0	0	45	9	20	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	1.110348082	1.110348082	1	0	1	0	0	2	1.47E-12	1	1	1	NA	NA	NA	NA
1351289	1206695641	PD9774b	3	156369743	G	T	-	-	-	-	-	-	45	0	0	63	4	6.349206349	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	0.352491455	0.352491455	1	0.04	0.96	0	0	2	0.000294233	1	1	1	NA	NA	NA	NA
1351289	1206695710	PD9774b	3	157041880	G	T	VEPH1	CCDS3179.1	r.?	-	-	intronic	32	0	0	58	14	24.13793103	0	0	NA	0	0	NA	1.100127507	1	0	0.899872493	1	1	0.100127507	unphased	1.340075271	1.340075271	1	0	0.9925	0.0075	0	2	5.04E-20	1	1	1	NA	NA	NA	NA
1351289	1206695932	PD9774b	3	159856521	G	T	-	-	-	-	-	-	38	0	0	53	5	9.433962264	0	0	NA	0	0	NA	2.803739453	1	1	0.196260547	2	1	0.803739453	unphased	0.684467203	0.851603341	0.803739453	0	0.99875	0.00125	0	2	7.34E-06	1	1	1	NA	NA	NA	NA
1351289	1206696008	PD9774b	3	160844979	A	T	NMD3	ENST00000468606	r.?	-	-	intronic	35	0	0	62	18	29.03225806	0	0	NA	0	0	NA	2.803739453	1	1	0.196260547	2	1	0.803739453	unphased	2.106392619	1.167792065	1.803739453	0	0.9975	0.0025	0	2	5.72E-27	1	1	1	NA	NA	NA	NA
1351289	1206696036	PD9774b	3	161230982	A	T	-	-	-	-	-	-	35	0	0	64	5	7.8125	0	0	NA	0	0	NA	2.803739453	1	1	0.196260547	2	1	0.803739453	unphased	0.566824403	0.705234017	0.803739453	0.0025	0.9975	0	0	2	1.86E-05	1	1	1	NA	NA	NA	NA
1351289	1206696055	PD9774b	3	161416626	C	T	-	-	-	-	-	-	36	0	0	77	19	24.67532468	0	0	NA	0	0	NA	2.803739453	1	1	0.196260547	2	1	0.803739453	unphased	1.79028175	0.992538999	1.803739453	0	1	0	0	2	7.35E-27	1	1	1	NA	NA	NA	NA
1351289	1206696094	PD9774b	3	161901704	G	T	-	-	-	-	-	-	26	0	0	75	7	9.333333333	0	0	NA	0	0	NA	2.803739453	1	1	0.196260547	2	1	0.803739453	unphased	0.67716622	0.842519572	0.803739453	0.00375	0.99625	0	0	2	1.15E-07	1	1	1	NA	NA	NA	NA
1351289	1206696113	PD9774b	3	162029517	C	T	-	-	-	-	-	-	51	0	0	65	18	27.69230769	0	0	NA	0	0	NA	2.803739453	1	1	0.196260547	2	1	0.803739453	unphased	2.009174499	1.113893969	1.803739453	0	0.9975	0.0025	0	2	1.52E-26	1	1	1	NA	NA	NA	NA
1351289	1206696156	PD9774b	3	162339541	A	T	-	-	-	-	-	-	39	0	0	53	14	26.41509434	0	0	NA	0	0	NA	2.803739453	1	1	0.196260547	2	1	0.803739453	unphased	1.916508169	1.062519405	1.803739453	0	1	0	0	2	1.22E-20	1	1	1	NA	NA	NA	NA
1351289	1206696195	PD9774b	3	162673431	C	T	-	-	-	-	-	-	42	0	0	55	11	20	0	0	NA	0	0	NA	2.803739453	1	1	0.196260547	2	1	0.803739453	unphased	1.451070471	1.451070471	1	0	0.995	0.005	0	2	4.77E-15	1	1	1	NA	NA	NA	NA
1351289	1206696224	PD9774b	3	162897793	A	T	-	-	-	-	-	-	47	0	0	64	6	9.375	0	0	NA	0	0	NA	2.803739453	1	1	0.196260547	2	1	0.803739453	unphased	0.680189283	0.84628082	0.803739453	0.00125	0.99875	0	0	2	9.14E-07	1	1	1	NA	NA	NA	NA
1351289	1206696309	PD9774b	3	163924515	C	T	-	-	-	-	-	-	40	0	0	65	14	21.53846154	0	0	NA	0	0	NA	2.803739453	1	1	0.196260547	2	1	0.803739453	unphased	1.562691277	1.562691277	1	0	0.9875	0.0125	0	2	2.93E-19	1	1	1	NA	NA	NA	NA
1351289	1206696472	PD9774b	3	165627382	G	T	-	-	-	-	-	-	44	0	0	52	6	11.53846154	0	0	NA	0	0	NA	2.803739453	1	1	0.196260547	2	1	0.803739453	unphased	0.837156041	1.041576394	0.803739453	0	1	0	0	2	2.61E-07	1	1	1	NA	NA	NA	NA
1351289	1206696473	PD9774b	3	165628041	C	T	-	-	-	-	-	-	41	0	0	59	8	13.55932203	0	0	NA	0	0	NA	2.803739453	1	1	0.196260547	2	1	0.803739453	unphased	0.983776591	0.983776591	1	0	1	0	0	2	6.90E-10	1	1	1	NA	NA	NA	NA
1351289	1206696474	PD9774b	3	165628042	C	T	-	-	-	-	-	-	43	0	0	58	7	12.06896552	0	0	NA	0	0	NA	2.803739453	1	1	0.196260547	2	1	0.803739453	unphased	0.875645974	1.089464964	0.803739453	0.0025	0.995	0.0025	0	2	1.88E-08	1	1	1	NA	NA	NA	NA
1351289	1206696476	PD9774b	3	165683111	A	T	-	-	-	-	-	-	32	0	0	80	4	5	0	0	NA	0	0	NA	2.803739453	1	1	0.196260547	2	1	0.803739453	unphased	0.362767618	0.451349771	0.803739453	0.01	0.99	0	0	2	0.000730349	1	1	1	NA	NA	NA	NA
1351289	1206696506	PD9774b	3	165930685	C	T	-	-	-	-	-	-	33	0	0	62	18	29.03225806	0	0	NA	0	0	NA	2.803739453	1	1	0.196260547	2	1	0.803739453	unphased	2.106392619	1.167792065	1.803739453	0	1	0	0	2	5.72E-27	1	1	1	NA	NA	NA	NA
1351289	1206696517	PD9774b	3	166009479	G	T	-	-	-	-	-	-	32	0	0	43	7	16.27906977	0	0	NA	0	0	NA	2.803739453	1	1	0.196260547	2	1	0.803739453	unphased	1.181103872	1.181103872	1	0	0.9975	0.0025	0	2	2.15E-09	1	1	1	NA	NA	NA	NA
1351289	1206696589	PD9774b	3	166695830	A	T	-	-	-	-	-	-	40	0	0	65	9	13.84615385	0	0	NA	0	0	NA	2.803739453	1	1	0.196260547	2	1	0.803739453	unphased	1.004587249	1.004587249	1	0	0.99875	0.00125	0	2	4.85E-11	1	1	1	NA	NA	NA	NA
1351289	1206696599	PD9774b	3	166921272	C	T	-	-	-	-	-	-	42	0	0	57	8	14.03508772	0	0	NA	0	0	NA	2.803739453	1	1	0.196260547	2	1	0.803739453	unphased	1.018295067	1.018295067	1	0	1	0	0	2	5.19E-10	1	1	1	NA	NA	NA	NA
1351289	1206696609	PD9774b	3	167036047	C	T	ZBBX	CCDS3199.2	r.?	-	-	intronic	47	0	0	81	20	24.69135802	0	0	NA	0	0	NA	2.803739453	1	1	0.196260547	2	1	0.803739453	unphased	1.791445026	0.993183923	1.803739453	0	1	0	0	2	3.35E-28	1	1	1	NA	NA	NA	NA
1351289	1206696615	PD9774b	3	167089531	C	T	ZBBX	CCDS3199.2	r.?	-	-	intronic	39	0	0	79	14	17.72151899	0	0	NA	0	0	NA	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	5.60E-18	1	1	1	NA	NA	NA	NA
1351289	1206696662	PD9774b	3	167670863	G	T	-	-	-	-	-	-	39	0	0	63	10	15.87301587	0	0	NA	0	0	NA	3.558173709	2	1	0.441826291	3	1	0.558173709	unphased	1.2713947	1.2713947	1	0	0.99875	0.00125	0	2	9.81E-13	1	1	1	NA	NA	NA	NA
1351289	1206696695	PD9774b	3	168073498	C	T	-	-	-	-	-	-	27	0	0	81	9	11.11111111	0	0	NA	0	0	NA	3.558173709	2	1	0.441826291	3	1	0.558173709	unphased	0.88997629	0.88997629	1	0.0025	0.995	0.0025	0	2	3.68E-10	1	1	1	NA	NA	NA	NA
1351289	1206696924	PD9774b	3	170059860	C	T	-	-	-	-	-	-	23	0	0	57	16	28.07017544	0	0	NA	0	0	NA	3.558173709	2	1	0.441826291	3	1	0.558173709	unphased	2.248361154	0.878893074	2.558173709	0	1	0	0	2	7.28E-24	1	1	1	NA	NA	NA	NA
1351289	1206696946	PD9774b	3	170164406	C	T	CLDN11	ENST00000486975	r.?	-	-	intronic	23	0	0	52	5	9.615384615	0	0	NA	0	0	NA	3.558173709	2	1	0.441826291	3	1	0.558173709	unphased	0.77017179	0.77017179	1	0.00375	0.99625	0	0	2	6.68E-06	1	1	1	NA	NA	NA	NA
1351289	1206696962	PD9774b	3	170470701	C	T	CLDN11	ENST00000486975	r.?	-	-	intronic	47	0	0	66	27	40.90909091	0	0	NA	0	0	NA	3.558173709	2	1	0.441826291	3	1	0.558173709	unphased	3.276730887	1.280886781	2.558173709	0	0.99625	0.00375	0	2	1.51E-44	1	1	1	NA	NA	NA	NA
1351289	1206696969	PD9774b	3	170543073	G	T	CLDN11	ENST00000486975	r.?	-	-	intronic	36	0	0	71	5	7.042253521	0	0	NA	0	0	NA	3.558173709	2	1	0.441826291	3	1	0.558173709	unphased	0.56406948	1.01056261	0.558173709	0	0.99625	0.00375	0	2	3.09E-05	1	1	1	NA	NA	NA	NA
1351289	1206697049	PD9774b	3	171201140	A	T	-	-	-	-	-	-	28	0	0	84	21	25	0	0	NA	0	0	NA	6.531613402	5	1	0.468386598	6	1	0.531613402	unphased	2.745806576	1.084607379	2.531613402	0	1	0	0	2	1.15E-29	1	1	1	NA	NA	NA	NA
1351289	1206697295	PD9774b	3	172393417	C	T	NCEH1	CCDS33893.1	r.?	-	-	intronic	35	0	0	97	30	30.92783505	0	0	NA	0	0	NA	6.531613402	5	1	0.468386598	6	1	0.531613402	unphased	3.396874115	0.961847668	3.531613402	0	0.99875	0.00125	0	2	6.69E-45	1	1	1	NA	NA	NA	NA
1351289	1206697299	PD9774b	3	172402755	G	T	NCEH1	CCDS33893.1	r.?	-	-	intronic	29	0	0	84	23	27.38095238	0	0	NA	0	0	NA	6.531613402	5	1	0.468386598	6	1	0.531613402	unphased	3.007311964	1.002437321	3	0	1	0	0	2	2.25E-33	1	1	1	NA	NA	NA	NA
1351289	1206697353	PD9774b	3	172630670	C	T	SPATA16	CCDS3221.1	r.?	-	-	intronic	33	0	0	109	61	55.96330275	0	0	NA	0	0	NA	6.531613402	5	1	0.468386598	6	1	0.531613402	unphased	6.146576189	1.111172409	5.531613402	0	1	0	0	2	7.84E-110	1	1	1	NA	NA	NA	NA
1351289	1206697387	PD9774b	3	173011392	A	T	-	-	-	-	-	-	37	0	0	108	61	56.48148148	0	0	NA	0	0	NA	6.531613402	5	1	0.468386598	6	1	0.531613402	unphased	6.203488931	1.121461042	5.531613402	0	1	0	0	2	3.47E-110	1	1	1	NA	NA	NA	NA
1351289	1206697443	PD9774b	3	173386665	C	T	NLGN1	CCDS3222.1	r.?	-	-	intronic	36	0	0	102	27	26.47058824	0	0	NA	0	0	NA	6.531613402	5	1	0.468386598	6	1	0.531613402	unphased	2.90732461	0.969108203	3	0	1	0	0	2	1.85E-38	1	1	1	NA	NA	NA	NA
1351289	1206697470	PD9774b	3	173526225	G	T	NLGN1	CCDS3222.1	r.?	-	-	intronic	27	0	0	107	32	29.90654206	0	0	NA	0	0	NA	6.531613402	5	1	0.468386598	6	1	0.531613402	unphased	3.284703194	0.93008572	3.531613402	0	1	0	0	2	3.04E-47	1	1	1	NA	NA	NA	NA
1351289	1206697496	PD9774b	3	173665716	C	T	NLGN1	CCDS3222.1	r.?	-	-	intronic	30	0	0	113	19	16.81415929	0	0	NA	0	0	NA	6.531613402	5	1	0.468386598	6	1	0.531613402	unphased	1.846737166	0.923368583	2	0	1	0	0	2	2.06E-23	1	1	1	NA	NA	NA	NA
1351289	1206697539	PD9774b	3	173939284	G	T	NLGN1	CCDS3222.1	r.?	-	-	intronic	36	0	0	101	23	22.77227723	0	0	NA	0	0	NA	6.531613402	5	1	0.468386598	6	1	0.531613402	unphased	2.501130743	0.987959197	2.531613402	0	1	0	0	2	2.64E-31	1	1	1	NA	NA	NA	NA
1351289	1206698213	PD9774b	3	179902186	A	T	-	-	-	-	-	-	39	0	0	76	25	32.89473684	0	0	NA	0	0	NA	3.857929349	3	0	0.142070651	3	1	0.857929349	unphased	2.733402057	0.911134019	3	0	1	0	0	2	1.83E-38	1	1	1	NA	NA	NA	NA
1351289	1206698390	PD9774b	3	181985233	C	T	-	-	-	-	-	-	28	0	0	76	34	44.73684211	0	0	NA	0	0	NA	3.857929349	3	0	0.142070651	3	1	0.857929349	unphased	3.717426797	1.239142266	3	0	0.99625	0.00375	0	2	2.16E-57	1	1	1	NA	NA	NA	NA
1351289	1206698479	PD9774b	3	182837057	A	T	LAMP3	CCDS3242.1	r.?	-	-	downstream	29	0	0	74	6	8.108108108	0	0	NA	0	0	NA	3.857929349	3	0	0.142070651	3	1	0.857929349	unphased	0.673746669	0.785317194	0.857929349	0	1	0	0	2	2.16E-06	1	1	1	NA	NA	NA	NA
1351289	1206698938	PD9774b	3	186477472	G	T	-	-	-	-	-	-	20	0	0	40	10	25	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	1.862903226	0.931451613	2	0.0025	0.9975	0	0	2	7.22E-15	1	1	1	NA	NA	NA	NA
1351289	1206699193	PD9774b	3	189304860	C	T	-	-	-	-	-	-	38	0	0	55	5	9.090909091	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.404692082	0.404692082	1	0.03125	0.96875	0	0	2	8.83E-06	1	1	1	NA	NA	NA	NA
1351289	1206699223	PD9774b	3	189708790	G	T	LEPREL1	CCDS3294.1	r.?	-	-	intronic	24	0	0	43	5	11.62790698	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.517629407	0.517629407	1	0.01125	0.98875	0	0	2	2.57E-06	1	1	1	NA	NA	NA	NA
1351289	1206699478	PD9774b	3	193740300	A	T	-	-	-	-	-	-	28	0	0	48	6	12.5	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.556451613	0.556451613	1	0.00875	0.99125	0	0	2	1.60E-07	1	1	1	NA	NA	NA	NA
1351289	1206701006	PD9774b	4	3372005	G	T	RGS12	CCDS3368.1	r.400g>u	c.11G>T	p.G4V	missense	40	0	0	35	3	8.571428571	0	0	NA	0	0	NA	0.822303617	0	0	0.177696383	1	0	0.822303617	unphased	0.452049987	0.549736105	0.822303617	0.00375	0.99375	0.0025	0	2	0.000725791	1	1	1	NA	NA	NA	NA
1351289	1206701290	PD9774b	4	4643112	C	T	-	-	-	-	-	-	33	0	0	35	5	14.28571429	0	0	NA	0	0	NA	0.822303617	0	0	0.177696383	1	0	0.822303617	unphased	0.753416646	0.916226841	0.822303617	0.0025	0.9975	0	0	2	8.95E-07	1	1	1	NA	NA	NA	NA
1351289	1206701311	PD9774b	4	4904864	A	T	-	-	-	-	-	-	34	0	0	42	9	21.42857143	0	0	NA	0	0	NA	0.822303617	0	0	0.177696383	1	0	0.822303617	unphased	1.130124969	1.130124969	1	0	1	0	0	2	7.51E-13	1	1	1	NA	NA	NA	NA
1351289	1206701318	PD9774b	4	5115928	C	T	STK32B	CCDS3380.1	r.?	-	-	intronic	20	0	0	42	6	14.28571429	0	0	NA	0	0	NA	0.822303617	0	0	0.177696383	1	0	0.822303617	unphased	0.753416646	0.916226841	0.822303617	0	0.99875	0.00125	0	2	7.02E-08	1	1	1	NA	NA	NA	NA
1351289	1206701374	PD9774b	4	5996191	A	T	C4orf50	CCDS3384.1	r.?	-	-	upstream	32	0	0	37	4	10.81081081	0	0	NA	0	0	NA	0.822303617	0	0	0.177696383	1	0	0.822303617	unphased	0.570153137	0.693360853	0.822303617	0.00375	0.99625	0	0	2	3.62E-05	1	1	1	NA	NA	NA	NA
1351289	1206701616	PD9774b	4	8506619	G	T	-	-	-	-	-	-	36	0	0	32	8	25	0	0	NA	0	0	NA	0.822303617	0	0	0.177696383	1	0	0.822303617	unphased	1.31847913	1.31847913	1	0	0.99875	0.00125	0	2	3.69E-12	1	1	1	NA	NA	NA	NA
1351289	1206701867	PD9774b	4	10731744	C	T	-	-	-	-	-	-	38	0	0	57	9	15.78947368	0	0	NA	0	0	NA	0.822303617	0	0	0.177696383	1	0	0.822303617	unphased	0.832723661	1.012671772	0.822303617	0.00125	0.99875	0	0	2	1.42E-11	1	1	1	NA	NA	NA	NA
1351289	1206702024	PD9774b	4	12810058	G	T	-	-	-	-	-	-	38	0	0	53	6	11.32075472	0	0	NA	0	0	NA	0.822303617	0	0	0.177696383	1	0	0.822303617	unphased	0.597047153	0.726066553	0.822303617	0	1	0	0	2	2.93E-07	1	1	1	NA	NA	NA	NA
1351289	1206702125	PD9774b	4	14382952	A	T	-	-	-	-	-	-	45	0	0	47	5	10.63829787	0	0	NA	0	0	NA	0.822303617	0	0	0.177696383	1	0	0.822303617	unphased	0.561054949	0.682296584	0.822303617	0.0025	0.9975	0	0	2	4.02E-06	1	1	1	NA	NA	NA	NA
1351289	1206702145	PD9774b	4	14668233	C	T	-	-	-	-	-	-	29	0	0	53	8	15.09433962	0	0	NA	0	0	NA	0.822303617	0	0	0.177696383	1	0	0.822303617	unphased	0.796062871	0.968088738	0.822303617	0	0.9975	0.0025	0	2	2.83E-10	1	1	1	NA	NA	NA	NA
1351289	1206702418	PD9774b	4	18332581	G	T	-	-	-	-	-	-	39	0	0	35	7	20	0	0	NA	0	0	NA	0.822303617	0	0	0.177696383	1	0	0.822303617	unphased	1.054783304	1.054783304	1	0.00125	0.9975	0.00125	0	2	4.65E-10	1	1	1	NA	NA	NA	NA
1351289	1206702618	PD9774b	4	20833474	G	T	KCNIP4	CCDS43217.1	r.?	-	-	intronic	25	0	0	47	5	10.63829787	0	0	NA	0	0	NA	0.822303617	0	0	0.177696383	1	0	0.822303617	unphased	0.561054949	0.682296584	0.822303617	0.005	0.995	0	0	2	4.02E-06	1	1	1	NA	NA	NA	NA
1351289	1206702671	PD9774b	4	21416888	A	T	KCNIP4	CCDS43217.1	r.?	-	-	intronic	40	0	0	55	6	10.90909091	0	0	NA	0	0	NA	0.822303617	0	0	0.177696383	1	0	0.822303617	unphased	0.575336348	0.699664133	0.822303617	0.00875	0.99125	0	0	2	3.67E-07	1	1	1	NA	NA	NA	NA
1351289	1206703121	PD9774b	4	26625474	C	T	TBC1D19	CCDS3439.1	r.?	-	-	intronic	29	0	0	53	8	15.09433962	197	1	0.507614213	206	20	9.708737864	0.822303617	0	0	0.177696383	1	0	0.822303617	unphased	0.796062871	0.968088738	0.822303617	0	0.99875	0.00125	0	2	2.83E-10	1	1.18E-19	0.627482305	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206703305	PD9774b	4	29121339	G	T	-	-	-	-	-	-	36	0	0	39	8	20.51282051	0	0	NA	0	0	NA	0.822303617	0	0	0.177696383	1	0	0.822303617	unphased	1.08182903	1.08182903	1	0	0.99875	0.00125	0	2	2.09E-11	1	1	1	NA	NA	NA	NA
1351289	1206703394	PD9774b	4	30323041	C	T	ENSG00000237496	ENST00000424014	r.?	-	-	intronic	29	0	0	55	15	27.27272727	0	0	NA	0	0	NA	1.766479176	1	0	0.233520824	1	1	0.766479176	unphased	1.695843294	1.695843294	1	0	0.975	0.025	0	2	3.01E-22	1	1	1	NA	NA	NA	NA
1351289	1206703417	PD9774b	4	30712487	G	T	-	-	-	-	-	-	47	0	0	57	12	21.05263158	0	0	NA	0	0	NA	1.766479176	1	0	0.233520824	1	1	0.766479176	unphased	1.309072017	1.309072017	1	0.00125	0.9975	0.00125	0	2	1.40E-16	1	1	1	NA	NA	NA	NA
1351289	1206703557	PD9774b	4	32248008	A	T	-	-	-	-	-	-	29	0	0	58	6	10.34482759	191	0	0	234	25	10.68376068	1.766479176	1	0	0.233520824	1	1	0.766479176	unphased	0.643250905	0.839228155	0.766479176	0.00125	0.99875	0	0	2	5.06E-07	1	3.16E-25	1	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206703629	PD9774b	4	33141434	C	T	-	-	-	-	-	-	37	0	0	71	13	18.30985915	0	0	NA	0	0	NA	1.766479176	1	0	0.233520824	1	1	0.766479176	unphased	1.138523902	1.138523902	1	0	1	0	0	2	5.42E-17	1	1	1	NA	NA	NA	NA
1351289	1206703631	PD9774b	4	33172234	A	T	-	-	-	-	-	-	26	0	0	70	11	15.71428571	0	0	NA	0	0	NA	1.766479176	1	0	0.233520824	1	1	0.766479176	unphased	0.977128755	0.977128755	1	0	1	0	0	2	8.06E-14	1	1	1	NA	NA	NA	NA
1351289	1206703641	PD9774b	4	33284685	G	T	-	-	-	-	-	-	39	0	0	70	13	18.57142857	0	0	NA	0	0	NA	1.766479176	1	0	0.233520824	1	1	0.766479176	unphased	1.154788529	1.154788529	1	0	1	0	0	2	4.44E-17	1	1	1	NA	NA	NA	NA
1351289	1206703819	PD9774b	4	34363243	C	T	-	-	-	-	-	-	32	0	0	60	6	10	0	0	NA	0	0	NA	1.766479176	1	0	0.233520824	1	1	0.766479176	unphased	0.621809208	0.811253883	0.766479176	0.0025	0.99625	0.00125	0	2	6.21E-07	1	1	1	NA	NA	NA	NA
1351289	1206703965	PD9774b	4	36573942	G	T	-	-	-	-	-	-	39	0	0	59	8	13.55932203	0	0	NA	0	0	NA	1.766479176	1	0	0.233520824	1	1	0.766479176	unphased	0.843131129	1.100005265	0.766479176	0	0.9975	0.0025	0	2	6.90E-10	1	1	1	NA	NA	NA	NA
1351289	1206704400	PD9774b	4	40321467	C	T	-	-	-	-	-	-	25	0	0	51	6	11.76470588	0	0	NA	0	0	NA	1.766479176	1	0	0.233520824	1	1	0.766479176	unphased	0.731540245	0.954416333	0.766479176	0.0025	0.995	0.0025	0	2	2.32E-07	1	1	1	NA	NA	NA	NA
1351289	1206704514	PD9774b	4	41449584	C	T	LIMCH1	CCDS33977.1	r.?	-	-	intronic	38	0	0	57	9	15.78947368	0	0	NA	0	0	NA	1.766479176	1	0	0.233520824	1	1	0.766479176	unphased	0.981804013	0.981804013	1	0.00125	0.99875	0	0	2	1.42E-11	1	1	1	NA	NA	NA	NA
1351289	1206704649	PD9774b	4	43058948	G	T	-	-	-	-	-	-	22	0	0	43	5	11.62790698	0	0	NA	0	0	NA	1.766479176	1	0	0.233520824	1	1	0.766479176	unphased	0.723033963	0.943318469	0.766479176	0	1	0	0	2	2.57E-06	1	1	1	NA	NA	NA	NA
1351289	1206704737	PD9774b	4	43940557	G	T	-	-	-	-	-	-	28	0	0	67	7	10.44776119	0	0	NA	0	0	NA	1.766479176	1	0	0.233520824	1	1	0.766479176	unphased	0.649651411	0.847578684	0.766479176	0	1	0	0	2	5.23E-08	1	1	1	NA	NA	NA	NA
1351289	1206704744	PD9774b	4	43967662	C	T	-	-	-	-	-	-	26	0	0	47	8	17.0212766	0	0	NA	0	0	NA	1.766479176	1	0	0.233520824	1	1	0.766479176	unphased	1.058398652	1.058398652	1	0.00125	0.9975	0.00125	0	2	1.03E-10	1	1	1	NA	NA	NA	NA
1351289	1206704806	PD9774b	4	44955059	A	T	-	-	-	-	-	-	38	0	0	44	6	13.63636364	0	0	NA	0	0	NA	1.766479176	1	0	0.233520824	1	1	0.766479176	unphased	0.847921647	1.106255295	0.766479176	0.00125	0.99625	0.0025	0	2	9.37E-08	1	1	1	NA	NA	NA	NA
1351289	1206704850	PD9774b	4	45128360	G	T	-	-	-	-	-	-	48	0	0	62	5	8.064516129	0	0	NA	0	0	NA	1.766479176	1	0	0.233520824	1	1	0.766479176	unphased	0.501459039	0.654237002	0.766479176	0.0075	0.9925	0	0	2	1.60E-05	1	1	1	NA	NA	NA	NA
1351289	1206704883	PD9774b	4	45499981	A	T	-	-	-	-	-	-	20	0	0	40	12	30	0	0	NA	0	0	NA	1.766479176	1	0	0.233520824	1	1	0.766479176	unphased	1.865427624	1.865427624	1	0	0.95625	0.04375	0	2	1.20E-18	1	1	1	NA	NA	NA	NA
1351289	1206704920	PD9774b	4	46015545	C	T	-	-	-	-	-	-	41	0	0	41	8	19.51219512	2	0	0	0	0	NA	1.766479176	1	0	0.233520824	1	1	0.766479176	unphased	1.213286259	1.213286259	1	0	0.99625	0.00375	0	2	3.22E-11	1	1	1	NA	NA	NA	NA
1351289	1206704999	PD9774b	4	47198913	G	T	GABRB1	CCDS3474.1	r.?	-	-	intronic	36	0	0	64	8	12.5	0	0	NA	0	0	NA	1.766479176	1	0	0.233520824	1	1	0.766479176	unphased	0.77726151	1.014067354	0.766479176	0	1	0	0	2	1.35E-09	1	1	1	NA	NA	NA	NA
1351289	1206711242	PD9774b	4	52767633	A	T	DCUN1D4	CCDS33982.1	r.?	-	-	intronic	40	0	0	60	4	6.666666667	0	0	NA	0	0	NA	1.766479176	1	0	0.233520824	1	1	0.766479176	unphased	0.414539472	0.540835922	0.766479176	0.0025	0.9975	0	0	2	0.000243755	1	1	1	NA	NA	NA	NA
1351289	1206711532	PD9774b	4	55662620	C	T	-	-	-	-	-	-	32	0	0	60	11	18.33333333	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.182795699	1.182795699	1	0	0.9975	0.0025	0	2	1.34E-14	1	1	1	NA	NA	NA	NA
1351289	1206711576	PD9774b	4	56128849	G	T	-	-	-	-	-	-	32	0	0	41	9	21.95121951	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.41620771	1.41620771	1	0.00125	0.9925	0.00625	0	2	5.92E-13	1	1	1	NA	NA	NA	NA
1351289	1206711766	PD9774b	4	58315546	G	T	-	-	-	-	-	-	22	0	0	44	7	15.90909091	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.026392962	1.026392962	1	0	1	0	0	2	2.55E-09	1	1	1	NA	NA	NA	NA
1351289	1206711770	PD9774b	4	58344168	G	T	-	-	-	-	-	-	45	0	0	67	9	13.43283582	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.866634569	0.866634569	1	0.0025	0.9975	0	0	2	6.43E-11	1	1	1	NA	NA	NA	NA
1351289	1206711834	PD9774b	4	59061107	A	T	-	-	-	-	-	-	26	0	0	51	4	7.843137255	2	0	0	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.506008855	0.506008855	1	0.01	0.99	0	0	2	0.000129466	1	1	1	NA	NA	NA	NA
1351289	1206712066	PD9774b	4	61437465	C	T	-	-	-	-	-	-	38	0	0	52	5	9.615384615	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.620347395	0.620347395	1	0.00375	0.99625	0	0	2	6.68E-06	1	1	1	NA	NA	NA	NA
1351289	1206712239	PD9774b	4	63348122	A	T	-	-	-	-	-	-	36	0	0	65	11	16.92307692	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.091811414	1.091811414	1	0.00125	0.9975	0.00125	0	2	3.41E-14	1	1	1	NA	NA	NA	NA
1351289	1206712250	PD9774b	4	63502840	A	T	-	-	-	-	-	-	29	0	0	59	10	16.94915254	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.093493712	1.093493712	1	0	1	0	0	2	4.91E-13	1	1	1	NA	NA	NA	NA
1351289	1206712274	PD9774b	4	63867388	G	T	-	-	-	-	-	-	41	0	0	48	5	10.41666667	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.672043011	0.672043011	1	0	1	0	0	2	4.47E-06	1	1	1	NA	NA	NA	NA
1351289	1206712400	PD9774b	4	65141908	G	T	TECRL	CCDS33990.1	r.?	-	-	downstream	38	0	0	47	11	23.40425532	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.509951956	1.509951956	1	0	0.99625	0.00375	0	2	7.21E-16	1	1	1	NA	NA	NA	NA
1351289	1206712451	PD9774b	4	65518487	C	T	-	-	-	-	-	-	38	0	0	67	10	14.92537313	142	1	0.704225352	170	31	18.23529412	2	1	1	1	NA	NA	NA	unphased	0.962927299	0.962927299	1	0.00375	0.99625	0	0	2	1.87E-12	1	2.18E-38	0.509230612	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206712561	PD9774b	4	66778917	C	T	-	-	-	-	-	-	40	0	0	72	12	16.66666667	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.075268817	1.075268817	1	0	0.9975	0.0025	0	2	2.84E-15	1	1	1	NA	NA	NA	NA
1351289	1206712871	PD9774b	4	70106910	C	T	-	-	-	-	-	-	33	0	0	55	7	12.72727273	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.82111437	0.82111437	1	0	1	0	0	2	1.28E-08	1	1	1	NA	NA	NA	NA
1351289	1206712939	PD9774b	4	70669209	G	T	-	-	-	-	-	-	29	0	0	64	8	12.5	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.806451613	0.806451613	1	0.00125	0.99875	0	0	2	1.35E-09	1	1	1	NA	NA	NA	NA
1351289	1206713076	PD9774b	4	72042707	C	T	-	-	-	-	-	-	42	0	0	57	8	14.03508772	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.90548953	0.90548953	1	0	0.99875	0.00125	0	2	5.19E-10	1	1	1	NA	NA	NA	NA
1351289	1206713194	PD9774b	4	73562704	C	T	-	-	-	-	-	-	38	0	0	64	17	26.5625	213	0	0	288	37	12.84722222	2	1	1	1	NA	NA	NA	unphased	1.713709677	1.713709677	1	0	0.93125	0.06875	0	2	8.43E-25	1	1.38E-39	1	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206713240	PD9774b	4	74114095	A	T	ANKRD17	CCDS34004.1	r.?	-	-	intronic	37	0	0	58	5	8.620689655	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.556173526	0.556173526	1	0.00125	0.99875	0	0	2	1.15E-05	1	1	1	NA	NA	NA	NA
1351289	1206713372	PD9774b	4	75933097	C	T	PARM1	CCDS47077.1	r.?	-	-	intronic	23	0	0	44	10	22.72727273	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.46627566	1.46627566	1	0	0.99875	0.00125	0	2	2.08E-14	1	1	1	NA	NA	NA	NA
1351289	1206713430	PD9774b	4	76618932	C	T	G3BP2	ENST00000511868	r.?	-	-	intronic	27	0	0	54	10	18.51851852	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.19474313	1.19474313	1	0.00125	0.9975	0.00125	0	2	1.91E-13	1	1	1	NA	NA	NA	NA
1351289	1206713643	PD9774b	4	79051519	A	T	FRAS1	ENST00000264895	r.?	-	-	intronic	38	0	0	53	7	13.20754717	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.852099817	0.852099817	1	0.0025	0.9975	0	0	2	9.85E-09	1	1	1	NA	NA	NA	NA
1351289	1206713731	PD9774b	4	80565825	C	T	-	-	-	-	-	-	31	0	0	70	7	10	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.64516129	0.64516129	1	0.00625	0.99375	0	0	2	7.11E-08	1	1	1	NA	NA	NA	NA
1351289	1206713756	PD9774b	4	80846368	A	T	ANTXR2	CCDS47085.1	r.?	-	-	intronic	49	0	0	45	4	8.888888889	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.573476703	0.573476703	1	0.005	0.995	0	0	2	7.91E-05	1	1	1	NA	NA	NA	NA
1351289	1206713793	PD9774b	4	81533761	G	T	C4orf22	CCDS3587.1	r.?	-	-	intronic	31	0	0	64	8	12.5	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.806451613	0.806451613	1	0.00125	0.99875	0	0	2	1.35E-09	1	1	1	NA	NA	NA	NA
1351289	1206713814	PD9774b	4	81684391	A	T	C4orf22	CCDS3587.1	r.?	-	-	intronic	44	0	0	57	4	7.01754386	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.452744765	0.452744765	1	0.01125	0.98875	0	0	2	0.000199821	1	1	1	NA	NA	NA	NA
1351289	1206713931	PD9774b	4	83190950	A	T	-	-	-	-	-	-	29	0	0	47	6	12.76595745	227	0	0	186	38	20.43010753	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.674940074	0.807907344	0.835417673	0.00125	0.99875	0	0	2	1.41E-07	1	1.01E-48	1	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206714178	PD9774b	4	86526445	A	T	ARHGAP24	CCDS34025.1	r.?	-	-	intronic	49	0	0	39	6	15.38461538	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.813389319	0.973631928	0.835417673	0.00125	0.9975	0.00125	0	2	4.43E-08	1	1	1	NA	NA	NA	NA
1351289	1206714599	PD9774b	4	91800222	G	T	FAM190A	CCDS47099.1	r.?	-	-	intronic	19	0	0	43	10	23.25581395	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	1.229541994	1.229541994	1	0	1	0	0	2	1.61E-14	1	1	1	NA	NA	NA	NA
1351289	1206714650	PD9774b	4	92291816	C	T	FAM190A	CCDS47099.1	r.?	-	-	intronic	34	0	0	43	6	13.95348837	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.737725197	0.883061516	0.835417673	0.0025	0.9975	0	0	2	8.13E-08	1	1	1	NA	NA	NA	NA
1351289	1206714715	PD9774b	4	93510235	C	T	GRID2	CCDS3637.1	r.?	-	-	intronic	23	0	0	54	11	20.37037037	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	1.07698771	1.07698771	1	0	1	0	0	2	3.84E-15	1	1	1	NA	NA	NA	NA
1351289	1206715562	PD9774b	4	105286825	A	T	-	-	-	-	-	-	38	0	0	40	6	15	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.793054586	0.94929113	0.835417673	0	1	0	0	2	5.18E-08	1	1	1	NA	NA	NA	NA
1351289	1206715831	PD9774b	4	109537506	C	T	RPL34	CCDS3680.1	r.?	-	-	upstream	20	0	0	30	7	23.33333333	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	1.233640468	1.233640468	1	0	0.9975	0.0025	0	2	1.44E-10	1	1	1	NA	NA	NA	NA
1351289	1206716016	PD9774b	4	111841176	A	T	-	-	-	-	-	-	38	0	0	52	11	21.15384615	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	1.118410314	1.118410314	1	0	1	0	0	2	2.44E-15	1	1	1	NA	NA	NA	NA
1351289	1206716148	PD9774b	4	113918718	G	T	ANK2	ENST00000506722	r.?	-	-	intronic	43	0	0	38	12	31.57894737	231	2	0.865800866	327	50	15.29051988	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	1.669588603	1.669588603	1	0	0.97875	0.02125	0	2	5.86E-19	1	7.69E-57	0.321191876	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206716480	PD9774b	4	118924481	C	T	-	-	-	-	-	-	34	0	0	43	5	11.62790698	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.614770997	0.735884597	0.835417673	0.0025	0.9975	0	0	2	2.57E-06	1	1	1	NA	NA	NA	NA
1351289	1206716927	PD9774b	4	125126345	C	T	-	-	-	-	-	-	26	0	0	53	6	11.32075472	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.598531763	0.716446136	0.835417673	0.00375	0.99625	0	0	2	2.93E-07	1	1	1	NA	NA	NA	NA
1351289	1206716997	PD9774b	4	126041972	A	T	-	-	-	-	-	-	29	0	0	46	5	10.86956522	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.574677237	0.687892123	0.835417673	0.0075	0.99125	0.00125	0	2	3.61E-06	1	1	1	NA	NA	NA	NA
1351289	1206717133	PD9774b	4	127549122	C	T	-	-	-	-	-	-	30	0	0	39	5	12.82051282	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.677824433	0.81135994	0.835417673	0.00125	0.99875	0	0	2	1.56E-06	1	1	1	NA	NA	NA	NA
1351289	1206717174	PD9774b	4	128224402	A	T	-	-	-	-	-	-	35	0	0	44	4	9.090909091	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.480639143	0.575327957	0.835417673	0.0025	0.9975	0	0	2	7.23E-05	1	1	1	NA	NA	NA	NA
1351289	1206717436	PD9774b	4	132117510	A	T	-	-	-	-	-	-	36	0	0	58	9	15.51724138	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.820401296	0.982025306	0.835417673	0.0025	0.99625	0.00125	0	2	1.67E-11	1	1	1	NA	NA	NA	NA
1351289	1206717445	PD9774b	4	132230293	C	T	-	-	-	-	-	-	38	0	0	41	7	17.07317073	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.902663757	1.080493969	0.835417673	0	0.99875	0.00125	0	2	1.51E-09	1	1	1	NA	NA	NA	NA
1351289	1206717799	PD9774b	4	134189390	G	T	-	-	-	-	-	-	31	0	0	46	8	17.39130435	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.919483578	0.919483578	1	0.0075	0.9925	0	0	2	8.61E-11	1	1	1	NA	NA	NA	NA
1351289	1206717847	PD9774b	4	135025364	C	T	-	-	-	-	-	-	38	0	0	41	5	12.19512195	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.644759826	0.771781406	0.835417673	0.005	0.995	0	0	2	2.02E-06	1	1	1	NA	NA	NA	NA
1351289	1206717874	PD9774b	4	135606091	G	T	-	-	-	-	-	-	36	0	0	49	7	14.28571429	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.755290082	0.90408679	0.835417673	0	1	0	0	2	5.58E-09	1	1	1	NA	NA	NA	NA
1351289	1206718088	PD9774b	4	138299304	C	T	-	-	-	-	-	-	22	0	0	55	7	12.72727273	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.672894801	0.80545914	0.835417673	0.00125	0.9975	0.00125	0	2	1.28E-08	1	1	1	NA	NA	NA	NA
1351289	1206718237	PD9774b	4	140519048	G	T	-	-	-	-	-	-	35	0	0	57	9	15.78947368	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.834794302	0.999253821	0.835417673	0	0.99875	0.00125	0	2	1.42E-11	1	1	1	NA	NA	NA	NA
1351289	1206718399	PD9774b	4	142739914	A	T	-	-	-	-	-	-	37	0	0	40	11	27.5	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	1.453933408	1.453933408	1	0	0.99375	0.00625	0	2	9.88E-17	1	1	1	NA	NA	NA	NA
1351289	1206718739	PD9774b	4	147017893	A	T	-	-	-	-	-	-	38	0	0	41	8	19.51219512	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	1.031615722	1.031615722	1	0.00125	0.9975	0.00125	0	2	3.22E-11	1	1	1	NA	NA	NA	NA
1351289	1206718872	PD9774b	4	148584290	G	T	PRMT10	CCDS3771.1	r.?	-	-	intronic	36	0	0	41	8	19.51219512	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	1.031615722	1.031615722	1	0.00125	0.99875	0	0	2	3.22E-11	1	1	1	NA	NA	NA	NA
1351289	1206719194	PD9774b	4	152876203	A	T	-	-	-	-	-	-	27	1	3.703703704	40	10	25	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	1.321757644	1.321757644	1	0	0.99875	0.00125	0	2	7.22E-15	0.126579904	1	1	NA	NA	NA	NA
1351289	1206719316	PD9774b	4	154636224	A	T	RNF175	CCDS47149.1	r.?	-	-	intronic	33	0	0	47	8	17.0212766	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.899920098	1.077209792	0.835417673	0.00375	0.9925	0.00375	0	2	1.03E-10	1	1	1	NA	NA	NA	NA
1351289	1206719343	PD9774b	4	154956414	G	T	-	-	-	-	-	-	32	0	0	44	6	13.63636364	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.720958715	0.862991936	0.835417673	0.0025	0.9975	0	0	2	9.37E-08	1	1	1	NA	NA	NA	NA
1351289	1206719643	PD9774b	4	159975274	C	T	-	-	-	-	-	-	38	0	0	45	8	17.77777778	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.939916547	0.939916547	1	0.0025	0.9975	0	0	2	7.14E-11	1	1	1	NA	NA	NA	NA
1351289	1206719994	PD9774b	4	164141814	G	T	-	-	-	-	-	-	39	0	0	50	4	8	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.422962446	0.506288602	0.835417673	0.01	0.99	0	0	2	0.000119787	1	1	1	NA	NA	NA	NA
1351289	1206720108	PD9774b	4	165472101	G	T	-	-	-	-	-	-	38	0	0	51	11	21.56862745	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	1.140339928	1.140339928	1	0	1	0	0	2	1.94E-15	1	1	1	NA	NA	NA	NA
1351289	1206720331	PD9774b	4	168076744	C	T	SPOCK3	CCDS34095.1	r.?	-	-	intronic	39	0	0	45	10	22.22222222	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	1.174895684	1.174895684	1	0	0.99875	0.00125	0	2	2.66E-14	1	1	1	NA	NA	NA	NA
1351289	1206720371	PD9774b	4	168630097	A	T	-	-	-	-	-	-	38	0	0	57	9	15.78947368	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.834794302	0.999253821	0.835417673	0	1	0	0	2	1.42E-11	1	1	1	NA	NA	NA	NA
1351289	1206720482	PD9774b	4	170211316	A	T	-	-	-	-	-	-	39	0	0	53	11	20.75471698	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	1.097308233	1.097308233	1	0	0.99875	0.00125	0	2	3.07E-15	1	1	1	NA	NA	NA	NA
1351289	1206720860	PD9774b	4	176106566	G	T	-	-	-	-	-	-	32	0	0	41	4	9.756097561	0	0	NA	1	0	0	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.515807861	0.617425125	0.835417673	0.00625	0.99375	0	0	2	5.46E-05	1	1	1	NA	NA	NA	NA
1351289	1206720894	PD9774b	4	176734389	A	T	GPM6A	CCDS3824.1	r.?	-	-	intronic	35	0	0	33	3	9.090909091	1	0	0	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.480639143	0.575327957	0.835417673	0.005	0.995	0	0	2	0.000609557	1	1	1	NA	NA	NA	NA
1351289	1206720956	PD9774b	4	177391645	A	T	-	-	-	-	-	-	36	0	0	50	5	10	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.528703058	0.632860753	0.835417673	0.005	0.995	0	0	2	5.49E-06	1	1	1	NA	NA	NA	NA
1351289	1206721008	PD9774b	4	177958694	G	T	-	-	-	-	-	-	38	0	0	40	7	17.5	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.925230351	0.925230351	1	0.0025	0.9975	0	0	2	1.26E-09	1	1	1	NA	NA	NA	NA
1351289	1206721379	PD9774b	4	182066361	C	T	-	-	-	-	-	-	32	0	0	47	12	25.53191489	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	1.349880147	1.349880147	1	0	0.99625	0.00375	0	2	1.09E-17	1	1	1	NA	NA	NA	NA
1351289	1206721464	PD9774b	4	182928468	C	T	-	-	-	-	-	-	30	0	0	61	12	19.67213115	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	1.040071589	1.040071589	1	0.0025	0.99625	0.00125	0	2	3.39E-16	1	1	1	NA	NA	NA	NA
1351289	1206721743	PD9774b	4	185861946	G	T	-	-	-	-	-	-	40	0	0	49	9	18.36734694	0	0	NA	0	0	NA	0.835417673	0	0	0.164582327	1	0	0.835417673	unphased	0.971087249	0.971087249	1	0.00125	0.99875	0	0	2	3.35E-12	1	1	1	NA	NA	NA	NA
1351289	1206724955	PD9774b	4	190925462	A	T	-	-	-	-	-	-	62	0	0	68	4	5.882352941	204	0	0	386	53	13.73056995	1.841368976	1	0	0.158631024	1	1	0.841368976	unphased	0.370175405	0.439967975	0.841368976	0.005	0.995	0	0	2	0.000394372	1	1.47E-57	1	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206725981	PD9774b	5	2987316	A	T	-	-	-	-	-	-	45	0	0	68	9	13.23529412	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	0.810591822	0.810591822	1	0.00375	0.99625	0	0	2	7.38E-11	1	1	1	NA	NA	NA	NA
1351289	1206725985	PD9774b	5	3012209	C	T	-	-	-	-	-	-	41	0	0	45	9	20	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	1.224894308	1.224894308	1	0.00125	0.995	0.00375	0	2	1.47E-12	1	1	1	NA	NA	NA	NA
1351289	1206726101	PD9774b	5	3737076	C	T	-	-	-	-	-	-	39	0	0	59	9	15.25423729	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	0.934241421	0.934241421	1	0	0.99875	0.00125	0	2	1.96E-11	1	1	1	NA	NA	NA	NA
1351289	1206726255	PD9774b	5	5299090	G	T	ADAMTS16	CCDS43299.1	r.?	-	-	intronic	35	0	0	68	14	20.58823529	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	1.260920611	1.260920611	1	0	0.99625	0.00375	0	2	5.84E-19	1	1	1	NA	NA	NA	NA
1351289	1206726446	PD9774b	5	7356114	G	T	-	-	-	-	-	-	43	0	0	64	7	10.9375	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	0.669864075	0.995549492	0.672858638	0.0025	0.9975	0	0	2	3.78E-08	1	1	1	NA	NA	NA	NA
1351289	1206726475	PD9774b	5	7835085	C	T	ADCY2	CCDS3872.2	r.?	-	-	downstream	28	0	0	53	11	20.75471698	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	1.271116735	1.271116735	1	0	0.9975	0.0025	0	2	3.07E-15	1	1	1	NA	NA	NA	NA
1351289	1206726499	PD9774b	5	8146699	A	T	-	-	-	-	-	-	42	0	0	63	9	14.28571429	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	0.874924506	0.874924506	1	0	1	0	0	2	3.62E-11	1	1	1	NA	NA	NA	NA
1351289	1206726777	PD9774b	5	11146169	C	T	CTNND2	CCDS3881.1	r.?	-	-	intronic	24	0	0	60	9	15	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	0.918670731	0.918670731	1	0	1	0	0	2	2.29E-11	1	1	1	NA	NA	NA	NA
1351289	1206726862	PD9774b	5	12553474	C	T	-	-	-	-	-	-	39	0	0	48	7	14.58333333	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	0.8931521	0.8931521	1	0	1	0	0	2	4.81E-09	1	1	1	NA	NA	NA	NA
1351289	1206726867	PD9774b	5	12683295	C	T	-	-	-	-	-	-	34	0	0	58	7	12.06896552	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	0.739160358	1.09853737	0.672858638	0.00375	0.995	0.00125	0	2	1.88E-08	1	1	1	NA	NA	NA	NA
1351289	1206727152	PD9774b	5	16719432	C	T	MYO10	ENST00000427430	r.?	-	-	intronic	33	0	0	68	11	16.17647059	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	0.990723337	0.990723337	1	0.00125	0.99875	0	0	2	5.76E-14	1	1	1	NA	NA	NA	NA
1351289	1206727249	PD9774b	5	17171256	C	T	-	-	-	-	-	-	30	0	0	51	7	13.7254902	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	0.840613741	0.840613741	1	0.0025	0.9975	0	0	2	7.46E-09	1	1	1	NA	NA	NA	NA
1351289	1206727361	PD9774b	5	17766758	C	T	-	-	-	-	-	-	35	0	0	55	14	25.45454545	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	1.558956392	1.558956392	1	0	0.98125	0.01875	0	2	2.19E-20	1	1	1	NA	NA	NA	NA
1351289	1206727515	PD9774b	5	18975787	G	T	-	-	-	-	-	-	29	0	0	70	12	17.14285714	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	1.049909407	1.049909407	1	0	1	0	0	2	1.99E-15	1	1	1	NA	NA	NA	NA
1351289	1206727811	PD9774b	5	21462158	A	T	-	-	-	-	-	-	25	0	0	65	4	6.153846154	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	0.376890556	0.560133341	0.672858638	0.00625	0.99375	0	0	2	0.000331785	1	1	1	NA	NA	NA	NA
1351289	1206727887	PD9774b	5	21588221	C	T	-	-	-	-	-	-	57	0	0	67	20	29.85074627	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	1.82820046	1.82820046	1	0	0.825	0.175	0	2	4.42E-30	1	1	1	NA	NA	NA	NA
1351289	1206728056	PD9774b	5	23690657	A	T	-	-	-	-	-	-	45	0	0	55	4	7.272727273	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	0.445416112	0.661975766	0.672858638	0.00125	0.99875	0	0	2	0.000173903	1	1	1	NA	NA	NA	NA
1351289	1206728137	PD9774b	5	24584478	A	T	CDH10	CCDS3892.1	r.?	-	-	intronic	43	0	0	58	11	18.96551724	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	1.161537706	1.161537706	1	0.00125	0.99875	0	0	2	8.96E-15	1	1	1	NA	NA	NA	NA
1351289	1206728214	PD9774b	5	25273667	A	T	-	-	-	-	-	-	29	0	0	53	8	15.09433962	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	0.924448534	0.924448534	1	0.00125	0.99875	0	0	2	2.83E-10	1	1	1	NA	NA	NA	NA
1351289	1206728431	PD9774b	5	27744452	C	T	-	-	-	-	-	-	28	0	0	57	6	10.52631579	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	0.644681215	0.958122819	0.672858638	0	1	0	0	2	4.56E-07	1	1	1	NA	NA	NA	NA
1351289	1206728458	PD9774b	5	28001419	G	T	-	-	-	-	-	-	32	0	0	50	8	16	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	0.979915447	0.979915447	1	0	0.99875	0.00125	0	2	1.74E-10	1	1	1	NA	NA	NA	NA
1351289	1206728520	PD9774b	5	28666838	C	T	-	-	-	-	-	-	36	0	0	55	6	10.90909091	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	0.668124168	0.992963649	0.672858638	0.005	0.995	0	0	2	3.67E-07	1	1	1	NA	NA	NA	NA
1351289	1206728669	PD9774b	5	29641717	A	T	-	-	-	-	-	-	41	0	0	57	9	15.78947368	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	0.967021822	0.967021822	1	0.0025	0.99625	0.00125	0	2	1.42E-11	1	1	1	NA	NA	NA	NA
1351289	1206728727	PD9774b	5	30094672	G	T	-	-	-	-	-	-	35	0	0	64	11	17.1875	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	1.052643546	1.052643546	1	0	1	0	0	2	2.85E-14	1	1	1	NA	NA	NA	NA
1351289	1206728829	PD9774b	5	31392791	C	T	-	-	-	-	-	-	34	0	0	56	7	12.5	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	0.765558943	1.137770848	0.672858638	0	1	0	0	2	1.46E-08	1	1	1	NA	NA	NA	NA
1351289	1206728914	PD9774b	5	32001276	G	T	PDZD2	CCDS34137.1	r.?	-	-	intronic	24	0	0	52	11	21.15384615	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	1.295561287	1.295561287	1	0	0.995	0.005	0	2	2.44E-15	1	1	1	NA	NA	NA	NA
1351289	1206728994	PD9774b	5	32613419	C	T	-	-	-	-	-	-	27	0	0	54	9	16.66666667	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	1.020745257	1.020745257	1	0.00125	0.99875	0	0	2	8.48E-12	1	1	1	NA	NA	NA	NA
1351289	1206729296	PD9774b	5	35590036	A	T	-	-	-	-	-	-	44	0	0	43	10	23.25581395	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	1.424295707	1.424295707	1	0	0.99625	0.00375	0	2	1.61E-14	1	1	1	NA	NA	NA	NA
1351289	1206729439	PD9774b	5	37197079	C	T	C5orf42	CCDS34146.1	r.?	-	-	intronic	39	0	0	63	16	25.3968254	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	1.555421344	1.555421344	1	0	0.9725	0.0275	0	2	4.48E-23	1	1	1	NA	NA	NA	NA
1351289	1206729500	PD9774b	5	37830510	C	T	GDNF	CCDS3922.1	r.?	-	-	intronic	42	0	0	70	9	12.85714286	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	0.787432055	1.170278586	0.672858638	0.00125	0.995	0.00375	0	2	9.65E-11	1	1	1	NA	NA	NA	NA
1351289	1206729695	PD9774b	5	40025959	G	T	-	-	-	-	-	-	41	0	0	61	15	24.59016393	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	1.506017592	1.506017592	1	0	0.985	0.015	0	2	1.73E-21	1	1	1	NA	NA	NA	NA
1351289	1206729697	PD9774b	5	40049775	C	T	-	-	-	-	-	-	30	0	0	54	13	24.07407407	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	1.474409815	1.474409815	1	0	0.9925	0.0075	0	2	1.12E-18	1	1	1	NA	NA	NA	NA
1351289	1206729809	PD9774b	5	41589081	G	T	-	-	-	-	-	-	23	0	0	52	12	23.07692308	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	1.413339586	1.413339586	1	0	0.99375	0.00625	0	2	4.19E-17	1	1	1	NA	NA	NA	NA
1351289	1206730059	PD9774b	5	44882886	A	T	-	-	-	-	-	-	32	0	0	49	14	28.57142857	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	1.749849012	1.749849012	1	0	0.96375	0.03625	0	2	3.50E-21	1	1	1	NA	NA	NA	NA
1351289	1206730082	PD9774b	5	45369437	C	T	HCN1	CCDS3952.1	r.?	-	-	intronic	31	0	0	54	8	14.81481481	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	0.907329117	0.907329117	1	0	1	0	0	2	3.31E-10	1	1	1	NA	NA	NA	NA
1351289	1206730102	PD9774b	5	45586812	G	T	HCN1	CCDS3952.1	r.?	-	-	intronic	33	0	0	57	8	14.03508772	0	0	NA	0	0	NA	1.672858638	1	0	0.327141362	1	1	0.672858638	unphased	0.859574953	0.859574953	1	0	1	0	0	2	5.19E-10	1	1	1	NA	NA	NA	NA
1351289	1206731640	PD9774b	5	53757288	G	T	-	-	-	-	-	-	34	0	0	77	11	14.28571429	0	0	NA	0	0	NA	1.74120865	1	0	0.25879135	1	1	0.74120865	unphased	0.884688793	0.884688793	1	0.00125	0.99875	0	0	2	2.41E-13	1	1	1	NA	NA	NA	NA
1351289	1206731831	PD9774b	5	55609049	C	T	-	-	-	-	-	-	44	0	0	50	9	18	0	0	NA	2	2	100	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.952711432	0.952711432	1	0	1	0	0	2	4.07E-12	1	2.50E-05	1	NA	NA	NA	NA
1351289	1206732166	PD9774b	5	59699531	A	T	PDE4D	CCDS47032.1	r.?	-	-	intronic	29	0	0	56	13	23.21428571	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	1.228695299	1.228695299	1	0	0.99625	0.00375	0	2	1.89E-18	1	1	1	NA	NA	NA	NA
1351289	1206732263	PD9774b	5	61322972	A	T	-	-	-	-	-	-	22	0	0	21	4	19.04761905	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	1.008160246	1.008160246	1	0	0.9975	0.0025	0	2	3.49E-06	1	1	1	NA	NA	NA	NA
1351289	1206732939	PD9774b	5	71821441	C	T	-	-	-	-	-	-	40	0	0	43	7	16.27906977	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.861625326	1.024246614	0.841228386	0	1	0	0	2	2.15E-09	1	1	1	NA	NA	NA	NA
1351289	1206733762	PD9774b	5	83637392	C	T	EDIL3	CCDS4062.1	r.?	-	-	intronic	35	0	0	51	9	17.64705882	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.934030816	0.934030816	1	0.0025	0.9975	0	0	2	4.92E-12	1	1	1	NA	NA	NA	NA
1351289	1206733897	PD9774b	5	85440608	G	T	-	-	-	-	-	-	32	0	0	57	9	15.78947368	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.835711783	0.993442205	0.841228386	0	0.9975	0.0025	0	2	1.42E-11	1	1	1	NA	NA	NA	NA
1351289	1206734025	PD9774b	5	87207026	G	T	-	-	-	-	-	-	33	0	0	44	6	13.63636364	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.721751085	0.857972813	0.841228386	0.00125	0.99875	0	0	2	9.37E-08	1	1	1	NA	NA	NA	NA
1351289	1206734058	PD9774b	5	87726945	G	T	-	-	-	-	-	-	33	0	0	29	7	24.13793103	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	1.27758238	1.27758238	1	0	1	0	0	2	1.11E-10	1	1	1	NA	NA	NA	NA
1351289	1206734301	PD9774b	5	91883018	A	T	-	-	-	-	-	-	29	0	0	37	4	10.81081081	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.572199058	0.680194663	0.841228386	0.0025	0.9975	0	0	2	3.62E-05	1	1	1	NA	NA	NA	NA
1351289	1206734387	PD9774b	5	93213926	A	T	MIR2277	CCDS4069.1	r.?	-	-	intronic	27	0	0	58	5	8.620689655	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.456279421	0.542396606	0.841228386	0.01125	0.98875	0	0	2	1.15E-05	1	1	1	NA	NA	NA	NA
1351289	1206734641	PD9774b	5	97440524	G	T	-	-	-	-	-	-	32	0	0	56	12	21.42857143	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	1.134180276	1.134180276	1	0	0.99875	0.00125	0	2	1.11E-16	1	1	1	NA	NA	NA	NA
1351289	1206734659	PD9774b	5	97872327	C	T	-	-	-	-	-	-	45	0	0	48	6	12.5	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.661605161	0.786475079	0.841228386	0.0025	0.9975	0	0	2	1.60E-07	1	1	1	NA	NA	NA	NA
1351289	1206734710	PD9774b	5	98472739	G	T	-	-	-	-	-	-	30	0	0	48	5	10.41666667	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.551337634	0.655395899	0.841228386	0.00125	0.99875	0	0	2	4.47E-06	1	1	1	NA	NA	NA	NA
1351289	1206734767	PD9774b	5	98996959	A	T	-	-	-	-	-	-	32	0	0	39	3	7.692307692	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.407141638	0.483984664	0.841228386	0.01	0.99	0	0	2	0.000998458	1	1	1	NA	NA	NA	NA
1351289	1206734879	PD9774b	5	100299131	A	T	-	-	-	-	-	-	35	0	0	47	9	19.14893617	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	1.0135228	1.0135228	1	0.00125	0.99875	0	0	2	2.24E-12	1	1	1	NA	NA	NA	NA
1351289	1206734912	PD9774b	5	100622413	A	T	-	-	-	-	-	-	33	0	0	51	5	9.803921569	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.518906009	0.616843199	0.841228386	0.0025	0.9975	0	0	2	6.06E-06	1	1	1	NA	NA	NA	NA
1351289	1206735137	PD9774b	5	103738055	C	T	-	-	-	-	-	-	47	0	0	54	7	12.96296296	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.686109056	0.815603785	0.841228386	0	1	0	0	2	1.13E-08	1	1	1	NA	NA	NA	NA
1351289	1206735385	PD9774b	5	106405360	A	T	-	-	-	-	-	-	35	0	0	52	9	17.30769231	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.916068685	0.916068685	1	0	1	0	0	2	5.92E-12	1	1	1	NA	NA	NA	NA
1351289	1206735693	PD9774b	5	110618242	G	T	CAMK4	CCDS4103.1	r.?	-	-	intronic	38	0	0	47	5	10.63829787	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.563068222	0.669340492	0.841228386	0.005	0.995	0	0	2	4.02E-06	1	1	1	NA	NA	NA	NA
1351289	1206735912	PD9774b	5	113513802	G	T	-	-	-	-	-	-	34	0	0	55	9	16.36363636	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.866101302	1.029567376	0.841228386	0	0.9975	0.0025	0	2	1.01E-11	1	1	1	NA	NA	NA	NA
1351289	1206736125	PD9774b	5	116893513	A	T	-	-	-	-	-	-	38	0	0	51	8	15.68627451	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.830249614	0.986949118	0.841228386	0.0025	0.9975	0	0	2	2.05E-10	1	1	1	NA	NA	NA	NA
1351289	1206736175	PD9774b	5	117591365	G	T	-	-	-	-	-	-	44	0	0	55	4	7.272727273	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.384933912	0.4575855	0.841228386	0.00875	0.99125	0	0	2	0.000173903	1	1	1	NA	NA	NA	NA
1351289	1206736384	PD9774b	5	120586793	A	T	-	-	-	-	-	-	32	0	0	46	7	15.2173913	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.80543237	0.957447922	0.841228386	0.0025	0.9975	0	0	2	3.53E-09	1	1	1	NA	NA	NA	NA
1351289	1206736406	PD9774b	5	120786324	A	T	-	-	-	-	-	-	33	0	0	52	13	25	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	1.323210322	1.323210322	1	0	0.9975	0.0025	0	2	6.47E-19	1	1	1	NA	NA	NA	NA
1351289	1206736652	PD9774b	5	124486613	C	T	-	-	-	-	-	-	46	0	0	50	6	12	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.635140955	0.755016076	0.841228386	0	1	0	0	2	2.06E-07	1	1	1	NA	NA	NA	NA
1351289	1206736692	PD9774b	5	124882921	G	T	-	-	-	-	-	-	39	0	0	49	13	26.53061224	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	1.404223199	1.404223199	1	0.00125	0.995	0.00375	0	2	2.71E-19	1	1	1	NA	NA	NA	NA
1351289	1206736883	PD9774b	5	127799844	G	T	FBN2	CCDS34222.1	r.?	-	-	intronic	36	0	0	59	14	23.72881356	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	1.255928442	1.255928442	1	0	1	0	0	2	6.58E-20	1	1	1	NA	NA	NA	NA
1351289	1206737242	PD9774b	5	133419401	A	T	-	-	-	-	-	-	38	0	0	49	8	16.32653061	0	0	NA	2	0	0	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.864137353	1.027232756	0.841228386	0.0025	0.9975	0	0	2	1.47E-10	1	1	1	NA	NA	NA	NA
1351289	1206737296	PD9774b	5	134137103	G	T	DDX46	CCDS34240.1	r.?	-	-	intronic	28	0	0	48	6	12.5	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.661605161	0.786475079	0.841228386	0.00125	0.99875	0	0	2	1.60E-07	1	1	1	NA	NA	NA	NA
1351289	1206737325	PD9774b	5	134797194	C	T	-	-	-	-	-	-	34	0	0	79	8	10.12658228	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.535983928	0.637144368	0.841228386	0.00875	0.99125	0	0	2	7.43E-09	1	1	1	NA	NA	NA	NA
1351289	1206737440	PD9774b	5	136970233	G	T	KLHL3	CCDS4192.1	r.?	-	-	intronic	37	0	0	46	8	17.39130435	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.920494137	0.920494137	1	0.00375	0.99625	0	0	2	8.61E-11	1	1	1	NA	NA	NA	NA
1351289	1206737526	PD9774b	5	138017316	C	T	-	-	-	-	-	-	30	0	0	41	6	14.63414634	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.77456214	0.920751312	0.841228386	0.00125	0.9975	0.00125	0	2	6.05E-08	1	1	1	NA	NA	NA	NA
1351289	1206737603	PD9774b	5	139265996	C	T	NRG2	CCDS47277.1	r.?	-	-	intronic	36	0	0	47	9	19.14893617	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	1.0135228	1.0135228	1	0.0025	0.99625	0.00125	0	2	2.24E-12	1	1	1	NA	NA	NA	NA
1351289	1206737687	PD9774b	5	140501418	A	T	PCDHB4	CCDS4246.1	r.?	-	-	upstream	27	0	0	41	7	17.07317073	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.90365583	1.074209864	0.841228386	0.00125	0.9975	0.00125	0	2	1.51E-09	1	1	1	NA	NA	NA	NA
1351289	1206737697	PD9774b	5	140601685	A	T	PCDHB14	CCDS4256.1	r.?	-	-	upstream	42	0	0	49	11	22.44897959	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	1.188188861	1.188188861	1	0	0.9975	0.0025	0	2	1.19E-15	1	1	1	NA	NA	NA	NA
1351289	1206737771	PD9774b	5	141632025	C	T	-	-	-	-	-	-	32	0	0	38	7	18.42105263	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.97499708	0.97499708	1	0	1	0	0	2	8.61E-10	1	1	1	NA	NA	NA	NA
1351289	1206737925	PD9774b	5	144062968	G	T	-	-	-	-	-	-	29	0	0	58	15	25.86206897	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	1.368838264	1.368838264	1	0	0.99625	0.00375	0	2	7.42E-22	1	1	1	NA	NA	NA	NA
1351289	1206738298	PD9774b	5	149118655	C	T	PPARGC1B	CCDS4298.1	r.?	-	-	intronic	34	0	0	57	5	8.771929825	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.464284324	0.551912336	0.841228386	0.005	0.995	0	0	2	1.05E-05	1	1	1	NA	NA	NA	NA
1351289	1206738326	PD9774b	5	149446401	G	T	CSF1R	CCDS4302.1	r.?	-	-	intronic	31	0	0	53	8	15.09433962	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.79891944	0.949705755	0.841228386	0.00125	0.99875	0	0	2	2.83E-10	1	1	1	NA	NA	NA	NA
1351289	1206738391	PD9774b	5	150708511	G	T	SLC36A2	CCDS4315.1	r.?	-	-	intronic	33	0	0	48	5	10.41666667	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.551337634	0.655395899	0.841228386	0.00375	0.99625	0	0	2	4.47E-06	1	1	1	NA	NA	NA	NA
1351289	1206738450	PD9774b	5	151832653	A	T	-	-	-	-	-	-	36	0	0	39	4	10.25641026	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.542855517	0.645312885	0.841228386	0.00125	0.99875	0	0	2	4.47E-05	1	1	1	NA	NA	NA	NA
1351289	1206738456	PD9774b	5	151991255	C	T	-	-	-	-	-	-	34	0	0	44	7	15.90909091	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.842042932	1.000968282	0.841228386	0.0025	0.9975	0	0	2	2.55E-09	1	1	1	NA	NA	NA	NA
1351289	1206738562	PD9774b	5	153514030	G	T	-	-	-	-	-	-	35	0	0	53	8	15.09433962	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.79891944	0.949705755	0.841228386	0	1	0	0	2	2.83E-10	1	1	1	NA	NA	NA	NA
1351289	1206738793	PD9774b	5	156717466	G	T	CYFIP2	ENST00000347377	r.?	-	-	intronic	31	0	0	43	4	9.302325581	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.492357329	0.585283779	0.841228386	0.00625	0.99375	0	0	2	6.60E-05	1	1	1	NA	NA	NA	NA
1351289	1206739268	PD9774b	5	163250044	C	T	-	-	-	-	-	-	32	0	0	53	5	9.433962264	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.49932465	0.593566097	0.841228386	0.00625	0.99375	0	0	2	7.34E-06	1	1	1	NA	NA	NA	NA
1351289	1206739293	PD9774b	5	163876792	A	T	AC008446.1	ENST00000486913	r.?	-	-	intronic	49	0	0	61	6	9.836065574	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.52060734	0.618865636	0.841228386	0.00625	0.99375	0	0	2	6.85E-07	1	1	1	NA	NA	NA	NA
1351289	1206739446	PD9774b	5	166064257	C	T	-	-	-	-	-	-	34	0	0	42	7	16.66666667	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.882140215	1.048633438	0.841228386	0.00125	0.9975	0.00125	0	2	1.81E-09	1	1	1	NA	NA	NA	NA
1351289	1206739685	PD9774b	5	169579557	G	T	-	-	-	-	-	-	28	0	0	31	6	19.35483871	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	1.024420895	1.024420895	1	0	0.99875	0.00125	0	2	1.03E-08	1	1	1	NA	NA	NA	NA
1351289	1206739838	PD9774b	5	171514927	C	T	STK10	CCDS34290.1	r.?	-	-	intronic	23	0	0	50	7	14	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.740997781	0.880852088	0.841228386	0.00375	0.995	0.00125	0	2	6.46E-09	1	1	1	NA	NA	NA	NA
1351289	1206739876	PD9774b	5	172021481	A	T	-	-	-	-	-	-	33	0	0	42	10	23.80952381	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	1.260200307	1.260200307	1	0	0.9975	0.0025	0	2	1.24E-14	1	1	1	NA	NA	NA	NA
1351289	1206740441	PD9774b	5	178593066	G	T	ADAMTS2	CCDS4444.1	r.?	-	-	intronic	31	0	0	40	4	10	0	0	NA	0	0	NA	0.841228386	0	0	0.158771614	1	0	0.841228386	unphased	0.529284129	0.629180063	0.841228386	0.0125	0.9875	0	0	2	4.95E-05	1	1	1	NA	NA	NA	NA
1351289	1206740674	PD9774b	5	180698080	G	T	-	-	-	-	-	-	33	0	0	34	7	20.58823529	0	0	NA	0	0	NA	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	3.73E-10	1	1	1	NA	NA	NA	NA
1351289	1206740861	PD9774b	6	1169934	C	T	-	-	-	-	-	-	31	0	0	40	7	17.5	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.954032258	0.954032258	1	0	1	0	0	2	1.26E-09	1	1	1	NA	NA	NA	NA
1351289	1206741114	PD9774b	6	4229569	G	T	-	-	-	-	-	-	35	0	0	42	6	14.28571429	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.778801843	0.778801843	1	0.0025	0.9975	0	0	2	7.02E-08	1	1	1	NA	NA	NA	NA
1351289	1206741293	PD9774b	6	6525519	A	T	-	-	-	-	-	-	33	0	0	29	4	13.79310345	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.751946607	0.751946607	1	0.00125	0.9975	0.00125	0	2	1.34E-05	1	1	1	NA	NA	NA	NA
1351289	1206741645	PD9774b	6	10549430	C	T	GCNT2	CCDS34338.1	r.?	-	-	intronic	26	0	0	45	9	20	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.090322581	1.090322581	1	0.00125	0.9975	0.00125	0	2	1.47E-12	1	1	1	NA	NA	NA	NA
1351289	1206741788	PD9774b	6	12493521	G	T	-	-	-	-	-	-	32	0	0	50	5	10	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.54516129	0.54516129	1	0.005	0.995	0	0	2	5.49E-06	1	1	1	NA	NA	NA	NA
1351289	1206741942	PD9774b	6	14287517	G	T	-	-	-	-	-	-	33	0	0	48	5	10.41666667	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.567876344	0.567876344	1	0.0075	0.9925	0	0	2	4.47E-06	1	1	1	NA	NA	NA	NA
1351289	1206742072	PD9774b	6	15695579	C	T	-	-	-	-	-	-	27	0	0	42	6	14.28571429	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.778801843	0.778801843	1	0.00125	0.99875	0	0	2	7.02E-08	1	1	1	NA	NA	NA	NA
1351289	1206742590	PD9774b	6	21325570	C	T	-	-	-	-	-	-	31	0	0	52	11	21.15384615	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.153225806	1.153225806	1	0	1	0	0	2	2.44E-15	1	1	1	NA	NA	NA	NA
1351289	1206742880	PD9774b	6	24542849	G	T	KIAA0319	CCDS34348.1	r.?	-	-	downstream	36	0	0	34	4	11.76470588	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.641366224	0.641366224	1	0.00875	0.99125	0	0	2	2.57E-05	1	1	1	NA	NA	NA	NA
1351289	1206743086	PD9774b	6	26751423	A	T	-	-	-	-	-	-	30	0	0	35	3	8.571428571	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.467281106	0.467281106	1	0.0025	0.9975	0	0	2	0.000725791	1	1	1	NA	NA	NA	NA
1351289	1206743310	PD9774b	6	29532878	A	T	GABBR1	CCDS4665.1	r.?	-	-	intronic	18	0	0	35	5	14.28571429	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.778801843	0.778801843	1	0.0025	0.99625	0.00125	0	2	8.95E-07	1	1	1	NA	NA	NA	NA
1351289	1206743511	PD9774b	6	30183424	G	T	TRIM26	CCDS4678.1	r.?	-	-	upstream	33	0	0	29	3	10.34482759	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.563959956	0.563959956	1	0.0025	0.9975	0	0	2	0.000414371	1	1	1	NA	NA	NA	NA
1351289	1206743950	PD9774b	6	32765526	G	T	-	-	-	-	-	-	38	0	0	44	10	22.72727273	0	0	NA	0	0	NA	0.816187611	0	0	0.183812389	1	0	0.816187611	unphased	1.19722739	1.19722739	1	0	1	0	0	2	2.08E-14	1	1	1	NA	NA	NA	NA
1351289	1206743990	PD9774b	6	33336568	C	T	-	-	-	-	-	-	22	0	0	39	7	17.94871795	0	0	NA	0	0	NA	0.816187611	0	0	0.183812389	1	0	0.816187611	unphased	0.945502656	0.945502656	1	0.00125	0.99875	0	0	2	1.04E-09	1	1	1	NA	NA	NA	NA
1351289	1206744078	PD9774b	6	34526771	C	T	SPDEF	CCDS4794.1	r.?	-	-	upstream	30	0	0	47	7	14.89361702	0	0	NA	0	0	NA	0.816187611	0	0	0.183812389	1	0	0.816187611	unphased	0.784566034	0.961256975	0.816187611	0.0025	0.99625	0.00125	0	2	4.12E-09	1	1	1	NA	NA	NA	NA
1351289	1206744383	PD9774b	6	38860861	A	T	DNAH8	CCDS4838.1	r.?	-	-	intronic	35	0	0	60	7	11.66666667	0	0	NA	0	0	NA	0.816187611	0	0	0.183812389	1	0	0.816187611	unphased	0.614576727	0.75298463	0.816187611	0.00125	0.99875	0	0	2	2.39E-08	1	1	1	NA	NA	NA	NA
1351289	1206744836	PD9774b	6	45209882	C	T	SUPT3H	CCDS34466.1	r.?	-	-	intronic	27	0	0	43	8	18.60465116	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.828207052	0.828207052	1	0.00125	0.9975	0.00125	0	2	4.85E-11	1	1	1	NA	NA	NA	NA
1351289	1206745019	PD9774b	6	47797874	A	T	OPN5	CCDS47439.1	r.?	-	-	downstream	41	0	0	43	5	11.62790698	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.517629407	0.517629407	1	0.00625	0.99375	0	0	2	2.57E-06	1	1	1	NA	NA	NA	NA
1351289	1206745200	PD9774b	6	50596492	A	T	-	-	-	-	-	-	41	0	0	49	4	8.163265306	0	0	NA	0	0	NA	0	0	0	1	NA	NA	NA	unphased	0.363396972	0.363396972	1	0.03	0.97	0	0	2	0.000110643	1	1	1	NA	NA	NA	NA
1351289	1206745343	PD9774b	6	52567743	G	T	-	-	-	-	-	-	28	0	0	34	4	11.76470588	0	0	NA	0	0	NA	1.592547364	1	0	0.407452636	1	1	0.592547364	unphased	0.711077679	1.200035173	0.592547364	0.00375	0.995	0.00125	0	2	2.57E-05	1	1	1	NA	NA	NA	NA
1351289	1206745386	PD9774b	6	52975079	C	T	-	-	-	-	-	-	39	0	0	43	6	13.95348837	0	0	NA	0	0	NA	1.592547364	1	0	0.407452636	1	1	0.592547364	unphased	0.8433712	0.8433712	1	0.00125	0.99625	0.0025	0	2	8.13E-08	1	1	1	NA	NA	NA	NA
1351289	1206745396	PD9774b	6	53054757	G	T	-	-	-	-	-	-	35	0	0	41	7	17.07317073	0	0	NA	0	0	NA	1.592547364	1	0	0.407452636	1	1	0.592547364	unphased	1.031929802	1.031929802	1	0	1	0	0	2	1.51E-09	1	1	1	NA	NA	NA	NA
1351289	1206745627	PD9774b	6	55889958	C	T	-	-	-	-	-	-	42	0	0	59	5	8.474576271	0	0	NA	0	0	NA	1.592547364	1	0	0.407452636	1	1	0.592547364	unphased	0.512216972	0.864432116	0.592547364	0	1	0	0	2	1.25E-05	1	1	1	NA	NA	NA	NA
1351289	1206746391	PD9774b	6	58163183	C	T	-	-	-	-	-	-	35	0	0	60	6	10	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.64516129	0.64516129	1	0.005	0.995	0	0	2	6.21E-07	1	1	1	NA	NA	NA	NA
1351289	1206746736	PD9774b	6	62776408	A	T	KHDRBS2	CCDS4963.1	r.?	-	-	intronic	37	0	0	52	5	9.615384615	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.620347395	0.620347395	1	0.00375	0.99625	0	0	2	6.68E-06	1	1	1	NA	NA	NA	NA
1351289	1206746810	PD9774b	6	63620266	A	T	-	-	-	-	-	-	30	0	0	68	6	8.823529412	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.569259962	0.569259962	1	0.0075	0.9925	0	0	2	1.31E-06	1	1	1	NA	NA	NA	NA
1351289	1206746902	PD9774b	6	64500767	C	T	EYS	CCDS47445.1	r.?	-	-	intronic	34	0	0	57	7	12.28070175	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.792303339	0.792303339	1	0	1	0	0	2	1.66E-08	1	1	1	NA	NA	NA	NA
1351289	1206746967	PD9774b	6	65289248	C	T	EYS	CCDS47445.1	r.?	-	-	intronic	30	0	0	47	10	21.27659574	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.372683596	1.372683596	1	0	0.99625	0.00375	0	2	4.27E-14	1	1	1	NA	NA	NA	NA
1351289	1206746968	PD9774b	6	65324131	C	T	EYS	CCDS47445.1	r.?	-	-	intronic	32	0	0	51	8	15.68627451	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.01201771	1.01201771	1	0.00125	0.9975	0.00125	0	2	2.05E-10	1	1	1	NA	NA	NA	NA
1351289	1206747168	PD9774b	6	67469777	G	T	-	-	-	-	-	-	39	0	0	43	5	11.62790698	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.750187547	0.750187547	1	0	1	0	0	2	2.57E-06	1	1	1	NA	NA	NA	NA
1351289	1206747197	PD9774b	6	67752942	C	T	-	-	-	-	-	-	35	0	0	66	5	7.575757576	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.488758553	0.488758553	1	0.0125	0.9875	0	0	2	2.17E-05	1	1	1	NA	NA	NA	NA
1351289	1206747247	PD9774b	6	68094592	G	T	-	-	-	-	-	-	37	0	0	50	4	8	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.516129032	0.516129032	1	0.01	0.99	0	0	2	0.000119787	1	1	1	NA	NA	NA	NA
1351289	1206747300	PD9774b	6	68591066	A	T	-	-	-	-	-	-	23	0	0	47	9	19.14893617	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.235415237	1.235415237	1	0.00125	0.99625	0.0025	0	2	2.24E-12	1	1	1	NA	NA	NA	NA
1351289	1206747397	PD9774b	6	69759316	G	T	BAI3	CCDS4968.1	r.?	-	-	intronic	44	0	0	47	4	8.510638298	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.549073439	0.549073439	1	0.005	0.995	0	0	2	9.39E-05	1	1	1	NA	NA	NA	NA
1351289	1206747451	PD9774b	6	70295250	C	T	-	-	-	-	-	-	41	0	0	58	6	10.34482759	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.667408231	0.667408231	1	0.00125	0.99875	0	0	2	5.06E-07	1	1	1	NA	NA	NA	NA
1351289	1206747543	PD9774b	6	71405788	A	T	SMAP1	CCDS43478.1	r.?	-	-	intronic	34	0	0	58	6	10.34482759	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.667408231	0.667408231	1	0.0025	0.9975	0	0	2	5.06E-07	1	1	1	NA	NA	NA	NA
1351289	1206747726	PD9774b	6	73377896	A	T	KCNQ5	CCDS4976.1	r.?	-	-	intronic	35	0	0	57	4	7.01754386	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.452744765	0.452744765	1	0.0125	0.9875	0	0	2	0.000199821	1	1	1	NA	NA	NA	NA
1351289	1206747739	PD9774b	6	73582931	G	T	KCNQ5	CCDS4976.1	r.?	-	-	intronic	38	0	0	62	6	9.677419355	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.624349636	0.624349636	1	0.00375	0.99625	0	0	2	7.56E-07	1	1	1	NA	NA	NA	NA
1351289	1206747753	PD9774b	6	73745823	G	T	KCNQ5	CCDS4976.1	r.?	-	-	intronic	22	0	0	55	5	9.090909091	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.586510264	0.586510264	1	0.005	0.995	0	0	2	8.83E-06	1	1	1	NA	NA	NA	NA
1351289	1206747838	PD9774b	6	74427428	C	T	CD109	CCDS4982.1	r.?	-	-	intronic	23	0	0	43	6	13.95348837	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.900225056	0.900225056	1	0.00125	0.99875	0	0	2	8.13E-08	1	1	1	NA	NA	NA	NA
1351289	1206747876	PD9774b	6	74864379	A	T	-	-	-	-	-	-	37	0	0	61	11	18.03278689	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.163405605	1.163405605	1	0	0.99875	0.00125	0	2	1.62E-14	1	1	1	NA	NA	NA	NA
1351289	1206747938	PD9774b	6	75555630	A	T	-	-	-	-	-	-	37	0	0	51	9	17.64705882	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.138519924	1.138519924	1	0.00125	0.995	0.00375	0	2	4.92E-12	1	1	1	NA	NA	NA	NA
1351289	1206748202	PD9774b	6	78465198	C	T	-	-	-	-	-	-	23	0	0	41	5	12.19512195	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.786782061	0.786782061	1	0	1	0	0	2	2.02E-06	1	1	1	NA	NA	NA	NA
1351289	1206748246	PD9774b	6	79150606	C	T	-	-	-	-	-	-	35	0	0	52	6	11.53846154	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.744416873	0.744416873	1	0	1	0	0	2	2.61E-07	1	1	1	NA	NA	NA	NA
1351289	1206748272	PD9774b	6	79351095	A	T	-	-	-	-	-	-	23	0	0	40	8	20	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.290322581	1.290322581	1	0.00125	0.99625	0.0025	0	2	2.61E-11	1	1	1	NA	NA	NA	NA
1351289	1206748333	PD9774b	6	80212804	G	T	LCA5	CCDS4990.1	r.?	-	-	intronic	47	0	0	58	4	6.896551724	0	0	NA	0	0	NA	1.628865241	1	0	0.371134759	1	1	0.628865241	unphased	0.41934332	0.666825407	0.628865241	0.0025	0.9975	0	0	2	0.000213772	1	1	1	NA	NA	NA	NA
1351289	1206748360	PD9774b	6	80620609	G	T	ELOVL4	CCDS4992.1	r.?	-	-	downstream	46	0	0	53	7	13.20754717	0	0	NA	0	0	NA	1.628865241	1	0	0.371134759	1	1	0.628865241	unphased	0.803082019	0.803082019	1	0.0025	0.9975	0	0	2	9.85E-09	1	1	1	NA	NA	NA	NA
1351289	1206748509	PD9774b	6	82190134	G	T	-	-	-	-	-	-	27	0	0	44	5	11.36363636	0	0	NA	0	0	NA	1.628865241	1	0	0.371134759	1	1	0.628865241	unphased	0.690963426	1.098746409	0.628865241	0	0.995	0.005	0	2	2.88E-06	1	1	1	NA	NA	NA	NA
1351289	1206748722	PD9774b	6	85036558	A	T	-	-	-	-	-	-	39	0	0	43	5	11.62790698	0	0	NA	0	0	NA	1.628865241	1	0	0.371134759	1	1	0.628865241	unphased	0.707032342	1.124298651	0.628865241	0.00375	0.99625	0	0	2	2.57E-06	1	1	1	NA	NA	NA	NA
1351289	1206748749	PD9774b	6	85334969	C	T	-	-	-	-	-	-	38	0	0	47	11	23.40425532	0	0	NA	0	0	NA	1.628865241	1	0	0.371134759	1	1	0.628865241	unphased	1.42309063	1.42309063	1	0.00125	0.995	0.00375	0	2	7.21E-16	1	1	1	NA	NA	NA	NA
1351289	1206748789	PD9774b	6	85758805	C	T	-	-	-	-	-	-	26	0	0	57	13	22.80701754	0	0	NA	0	0	NA	1.628865241	1	0	0.371134759	1	1	0.628865241	unphased	1.386775717	1.386775717	1	0	0.99375	0.00625	0	2	2.44E-18	1	1	1	NA	NA	NA	NA
1351289	1206749250	PD9774b	6	91890655	A	T	-	-	-	-	-	-	42	0	0	61	5	8.196721311	0	0	NA	0	0	NA	1.628865241	1	0	0.371134759	1	1	0.628865241	unphased	0.498399848	0.792538393	0.628865241	0.00375	0.99625	0	0	2	1.47E-05	1	1	1	NA	NA	NA	NA
1351289	1206749570	PD9774b	6	96980877	A	T	KIAA0776	CCDS5034.1	r.?	-	-	intronic	45	0	0	57	6	10.52631579	0	0	NA	0	0	NA	1.628865241	1	0	0.371134759	1	1	0.628865241	unphased	0.640050331	1.017786147	0.628865241	0.00125	0.99875	0	0	2	4.56E-07	1	1	1	NA	NA	NA	NA
1351289	1206749712	PD9774b	6	98882482	C	T	-	-	-	-	-	-	40	0	0	47	10	21.27659574	0	0	NA	0	0	NA	1.628865241	1	0	0.371134759	1	1	0.628865241	unphased	1.293718754	1.293718754	1	0.00125	0.9975	0.00125	0	2	4.27E-14	1	1	1	NA	NA	NA	NA
1351289	1206749744	PD9774b	6	99439988	G	T	-	-	-	-	-	-	32	0	0	62	8	12.90322581	0	0	NA	0	0	NA	1.628865241	1	0	0.371134759	1	1	0.628865241	unphased	0.784577825	0.784577825	1	0.005	0.995	0	0	2	1.04E-09	1	1	1	NA	NA	NA	NA
1351289	1206749783	PD9774b	6	99992116	C	T	CCNC	CCDS34502.1	r.?	-	-	intronic	47	0	0	39	6	15.38461538	0	0	NA	0	0	NA	1.628865241	1	0	0.371134759	1	1	0.628865241	unphased	0.935458176	0.935458176	1	0	1	0	0	2	4.43E-08	1	1	1	NA	NA	NA	NA
1351289	1206749829	PD9774b	6	100585933	G	T	-	-	-	-	-	-	47	0	0	70	13	18.57142857	0	0	NA	0	0	NA	1.628865241	1	0	0.371134759	1	1	0.628865241	unphased	1.129231655	1.129231655	1	0	0.9975	0.0025	0	2	4.44E-17	1	1	1	NA	NA	NA	NA
1351289	1206749840	PD9774b	6	100797608	G	T	-	-	-	-	-	-	34	0	0	49	4	8.163265306	0	0	NA	0	0	NA	1.628865241	1	0	0.371134759	1	1	0.628865241	unphased	0.496365563	0.789303543	0.628865241	0.00375	0.99625	0	0	2	0.000110643	1	1	1	NA	NA	NA	NA
1351289	1206750001	PD9774b	6	102752061	C	T	-	-	-	-	-	-	35	0	0	52	5	9.615384615	0	0	NA	0	0	NA	1.628865241	1	0	0.371134759	1	1	0.628865241	unphased	0.58466136	0.9297085	0.628865241	0.00125	0.9975	0.00125	0	2	6.68E-06	1	1	1	NA	NA	NA	NA
1351289	1206750013	PD9774b	6	102892724	G	T	-	-	-	-	-	-	51	0	0	50	8	16	0	0	NA	0	0	NA	1.628865241	1	0	0.371134759	1	1	0.628865241	unphased	0.972876503	0.972876503	1	0	1	0	0	2	1.74E-10	1	1	1	NA	NA	NA	NA
1351289	1206750059	PD9774b	6	103498594	G	T	-	-	-	-	-	-	27	0	0	51	6	11.76470588	0	0	NA	0	0	NA	1.628865241	1	0	0.371134759	1	1	0.628865241	unphased	0.71535037	1.137525694	0.628865241	0	0.99875	0.00125	0	2	2.32E-07	1	1	1	NA	NA	NA	NA
1351289	1206750110	PD9774b	6	104055264	A	T	-	-	-	-	-	-	29	0	0	60	7	11.66666667	223	0	0	307	30	9.771986971	1.628865241	1	0	0.371134759	1	1	0.628865241	unphased	0.709389117	1.128046313	0.628865241	0	0.99875	0.00125	0	2	2.39E-08	1	8.72E-29	1	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206750145	PD9774b	6	104308418	C	T	-	-	-	-	-	-	26	0	0	57	6	10.52631579	0	0	NA	0	0	NA	1.628865241	1	0	0.371134759	1	1	0.628865241	unphased	0.640050331	1.017786147	0.628865241	0	0.99875	0.00125	0	2	4.56E-07	1	1	1	NA	NA	NA	NA
1351289	1206750169	PD9774b	6	104559381	A	T	-	-	-	-	-	-	28	0	0	67	7	10.44776119	0	0	NA	0	0	NA	1.628865241	1	0	0.371134759	1	1	0.628865241	unphased	0.635273836	1.010190728	0.628865241	0.00125	0.99875	0	0	2	5.23E-08	1	1	1	NA	NA	NA	NA
1351289	1206750266	PD9774b	6	106127877	A	T	-	-	-	-	-	-	24	0	0	59	7	11.86440678	0	0	NA	0	0	NA	1.628865241	1	0	0.371134759	1	1	0.628865241	unphased	0.721412661	1.147165742	0.628865241	0	0.9975	0.0025	0	2	2.12E-08	1	1	1	NA	NA	NA	NA
1351289	1206750386	PD9774b	6	107448626	C	T	-	-	-	-	-	-	33	0	0	48	11	22.91666667	0	0	NA	0	0	NA	1.628865241	1	0	0.371134759	1	1	0.628865241	unphased	1.393442908	1.393442908	1	0	0.995	0.005	0	2	9.31E-16	1	1	1	NA	NA	NA	NA
1351289	1206750816	PD9774b	6	112931858	C	T	-	-	-	-	-	-	22	0	0	49	7	14.28571429	0	0	NA	0	0	NA	1.628865241	1	0	0.371134759	1	1	0.628865241	unphased	0.868639735	0.868639735	1	0	1	0	0	2	5.58E-09	1	1	1	NA	NA	NA	NA
1351289	1206750827	PD9774b	6	113003327	G	T	-	-	-	-	-	-	32	0	0	72	16	22.22222222	0	0	NA	0	0	NA	1.628865241	1	0	0.371134759	1	1	0.628865241	unphased	1.351217365	1.351217365	1	0	0.995	0.005	0	2	4.82E-22	1	1	1	NA	NA	NA	NA
1351289	1206750866	PD9774b	6	113504839	A	T	-	-	-	-	-	-	36	0	0	62	11	17.74193548	0	0	NA	0	0	NA	1.628865241	1	0	0.371134759	1	1	0.628865241	unphased	1.07879451	1.07879451	1	0	0.99875	0.00125	0	2	1.96E-14	1	1	1	NA	NA	NA	NA
1351289	1206751094	PD9774b	6	116119947	C	T	-	-	-	-	-	-	34	0	0	61	5	8.196721311	0	0	NA	0	0	NA	1.628865241	1	0	0.371134759	1	1	0.628865241	unphased	0.498399848	0.792538393	0.628865241	0.0025	0.9975	0	0	2	1.47E-05	1	1	1	NA	NA	NA	NA
1351289	1206751168	PD9774b	6	117271164	C	T	-	-	-	-	-	-	40	0	0	56	7	12.5	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.806451613	0.806451613	1	0.00375	0.99625	0	0	2	1.46E-08	1	1	1	NA	NA	NA	NA
1351289	1206751178	PD9774b	6	117384786	G	T	-	-	-	-	-	-	24	0	0	46	4	8.695652174	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.561009818	0.561009818	1	0.00875	0.99125	0	0	2	8.62E-05	1	1	1	NA	NA	NA	NA
1351289	1206751192	PD9774b	6	117522508	G	T	-	-	-	-	-	-	31	0	0	56	9	16.07142857	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.036866359	1.036866359	1	0	0.99875	0.00125	0	2	1.20E-11	1	1	1	NA	NA	NA	NA
1351289	1206751373	PD9774b	6	119495520	C	T	MAN1A1	CCDS5122.1	r.?	-	-	downstream	33	0	0	69	6	8.695652174	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.561009818	0.561009818	1	0.00375	0.99625	0	0	2	1.43E-06	1	1	1	NA	NA	NA	NA
1351289	1206751780	PD9774b	6	124510496	A	T	NKAIN2	CCDS34526.1	r.?	-	-	intronic	38	0	0	56	7	12.5	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.806451613	0.806451613	1	0.0025	0.9975	0	0	2	1.46E-08	1	1	1	NA	NA	NA	NA
1351289	1206751806	PD9774b	6	124674622	C	T	NKAIN2	CCDS34526.1	r.?	-	-	intronic	27	0	0	48	5	10.41666667	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.672043011	0.672043011	1	0.0025	0.9975	0	0	2	4.47E-06	1	1	1	NA	NA	NA	NA
1351289	1206751891	PD9774b	6	126000113	C	T	-	-	-	-	-	-	32	0	0	55	10	18.18181818	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.173020528	1.173020528	1	0.00125	0.9975	0.00125	0	2	2.33E-13	1	1	1	NA	NA	NA	NA
1351289	1206751932	PD9774b	6	126775198	G	T	-	-	-	-	-	-	25	0	0	48	8	16.66666667	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.075268817	1.075268817	1	0.00125	0.99875	0	0	2	1.23E-10	1	1	1	NA	NA	NA	NA
1351289	1206751979	PD9774b	6	127366206	C	T	-	-	-	-	-	-	36	0	0	57	6	10.52631579	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.679117148	0.679117148	1	0.0025	0.9975	0	0	2	4.56E-07	1	1	1	NA	NA	NA	NA
1351289	1206751983	PD9774b	6	127461163	C	T	RSPO3	CCDS5135.1	r.?	-	-	intronic	48	0	0	65	5	7.692307692	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.496277916	0.496277916	1	0.00625	0.99375	0	0	2	2.01E-05	1	1	1	NA	NA	NA	NA
1351289	1206752171	PD9774b	6	129903474	C	T	ARHGAP18	CCDS34535.1	r.?	-	-	intronic	22	0	0	65	9	13.84615385	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.893300248	0.893300248	1	0	0.99875	0.00125	0	2	4.85E-11	1	1	1	NA	NA	NA	NA
1351289	1206752339	PD9774b	6	131886831	A	T	-	-	-	-	-	-	34	0	0	49	4	8.163265306	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.526662278	0.526662278	1	0.01	0.99	0	0	2	0.000110643	1	1	1	NA	NA	NA	NA
1351289	1206752406	PD9774b	6	132917522	C	T	-	-	-	-	-	-	29	0	0	61	6	9.836065574	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.634584876	0.634584876	1	0.00125	0.99875	0	0	2	6.85E-07	1	1	1	NA	NA	NA	NA
1351289	1206752468	PD9774b	6	133706166	A	T	EYA4	CCDS5166.1	r.?	-	-	intronic	32	0	0	53	7	13.20754717	0	0	NA	1	0	0	2	1	1	1	NA	NA	NA	unphased	0.852099817	0.852099817	1	0	0.99875	0.00125	0	2	9.85E-09	1	1	1	NA	NA	NA	NA
1351289	1206752494	PD9774b	6	133964873	C	T	-	-	-	-	-	-	29	0	0	67	5	7.462686567	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.481463649	0.481463649	1	0.01	0.99	0	0	2	2.33E-05	1	1	1	NA	NA	NA	NA
1351289	1206752623	PD9774b	6	135215083	C	T	-	-	-	-	-	-	36	0	0	70	8	11.42857143	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.737327189	0.737327189	1	0.0025	0.9975	0	0	2	2.80E-09	1	1	1	NA	NA	NA	NA
1351289	1206752647	PD9774b	6	135555065	G	T	-	-	-	-	-	-	34	0	0	56	6	10.71428571	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.69124424	0.69124424	1	0.0025	0.9975	0	0	2	4.09E-07	1	1	1	NA	NA	NA	NA
1351289	1206752866	PD9774b	6	138206744	C	T	TNFAIP3	CCDS5187.1	r.?	-	-	downstream	25	0	0	53	11	20.75471698	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.339013999	1.339013999	1	0	1	0	0	2	3.07E-15	1	1	1	NA	NA	NA	NA
1351289	1206752932	PD9774b	6	139121510	G	T	ECT2L	CCDS43508.1	r.?	-	-	intronic	37	0	0	57	6	10.52631579	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.679117148	0.679117148	1	0.00125	0.99875	0	0	2	4.56E-07	1	1	1	NA	NA	NA	NA
1351289	1206752969	PD9774b	6	139510192	C	T	-	-	-	-	-	-	34	0	0	52	9	17.30769231	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.11662531	1.11662531	1	0.0025	0.9975	0	0	2	5.92E-12	1	1	1	NA	NA	NA	NA
1351289	1206753152	PD9774b	6	141979402	A	T	-	-	-	-	-	-	29	0	0	54	9	16.66666667	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.075268817	1.075268817	1	0	0.99875	0.00125	0	2	8.48E-12	1	1	1	NA	NA	NA	NA
1351289	1206753153	PD9774b	6	142018037	A	T	-	-	-	-	-	-	32	0	0	48	12	25	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.612903226	1.612903226	1	0	0.9875	0.0125	0	2	1.44E-17	1	1	1	NA	NA	NA	NA
1351289	1206753189	PD9774b	6	142625359	A	T	GPR126	CCDS47490.1	r.?	-	-	intronic	48	0	0	57	5	8.771929825	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.565930956	0.565930956	1	0.00625	0.99375	0	0	2	1.05E-05	1	1	1	NA	NA	NA	NA
1351289	1206753236	PD9774b	6	143326109	G	T	-	-	-	-	-	-	31	0	0	48	11	22.91666667	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.478494624	1.478494624	1	0	0.99375	0.00625	0	2	9.31E-16	1	1	1	NA	NA	NA	NA
1351289	1206753410	PD9774b	6	145893324	A	T	EPM2A	ENST00000450221	r.?	-	-	intronic	35	0	0	52	5	9.615384615	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.620347395	0.620347395	1	0.0125	0.9875	0	0	2	6.68E-06	1	1	1	NA	NA	NA	NA
1351289	1206753426	PD9774b	6	146313182	G	T	-	-	-	-	-	-	32	0	0	64	10	15.625	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.008064516	1.008064516	1	0.00125	0.99875	0	0	2	1.16E-12	1	1	1	NA	NA	NA	NA
1351289	1206753541	PD9774b	6	148381391	A	T	-	-	-	-	-	-	29	0	0	36	10	27.77777778	0	0	NA	0	0	NA	0.864122853	0	0	0.135877147	1	0	0.864122853	unphased	1.476593266	1.476593266	1	0	0.99375	0.00625	0	2	2.21E-15	1	1	1	NA	NA	NA	NA
1351289	1206753560	PD9774b	6	148635280	C	T	SASH1	ENST00000367469	r.?	-	-	intronic	38	0	0	56	6	10.71428571	0	0	NA	0	0	NA	0.864122853	0	0	0.135877147	1	0	0.864122853	unphased	0.569543117	0.659099704	0.864122853	0.005	0.995	0	0	2	4.09E-07	1	1	1	NA	NA	NA	NA
1351289	1206753701	PD9774b	6	149891409	C	T	C6orf72	CCDS5216.1	r.?	-	-	intronic	24	0	0	32	4	12.5	0	0	NA	0	0	NA	0.864122853	0	0	0.135877147	1	0	0.864122853	unphased	0.66446697	0.768949655	0.864122853	0.00125	0.99625	0.0025	0	2	2.01E-05	1	1	1	NA	NA	NA	NA
1351289	1206753820	PD9774b	6	151135152	G	T	PLEKHG1	CCDS34552.1	r.?	-	-	intronic	43	0	0	36	7	19.44444444	0	0	NA	0	0	NA	0.864122853	0	0	0.135877147	1	0	0.864122853	unphased	1.033615286	1.033615286	1	0	1	0	0	2	5.74E-10	1	1	1	NA	NA	NA	NA
1351289	1206753950	PD9774b	6	152549381	C	T	SYNE1	CCDS5236.1	r.?	-	-	intronic	28	0	0	52	10	19.23076923	0	0	NA	0	0	NA	0.864122853	0	0	0.135877147	1	0	0.864122853	unphased	1.022256876	1.022256876	1	0.00125	0.9975	0.00125	0	2	1.28E-13	1	1	1	NA	NA	NA	NA
1351289	1206754080	PD9774b	6	154019274	A	T	-	-	-	-	-	-	30	0	0	48	4	8.333333333	0	0	NA	0	0	NA	0.864122853	0	0	0.135877147	1	0	0.864122853	unphased	0.44297798	0.512633103	0.864122853	0.00875	0.99125	0	0	2	0.000102016	1	1	1	NA	NA	NA	NA
1351289	1206754624	PD9774b	6	160365226	A	T	-	-	-	-	-	-	28	0	0	35	3	8.571428571	0	0	NA	0	0	NA	0.864122853	0	0	0.135877147	1	0	0.864122853	unphased	0.455634493	0.527279763	0.864122853	0.0025	0.9975	0	0	2	0.000725791	1	1	1	NA	NA	NA	NA
1351289	1206754737	PD9774b	6	161938054	A	T	PARK2	CCDS5281.1	r.?	-	-	intronic	24	0	0	52	7	13.46153846	0	0	NA	0	0	NA	0.864122853	0	0	0.135877147	1	0	0.864122853	unphased	0.715579813	0.828099628	0.864122853	0	1	0	0	2	8.58E-09	1	1	1	NA	NA	NA	NA
1351289	1206754836	PD9774b	6	163583398	C	T	PACRG	CCDS43524.1	r.?	-	-	intronic	34	0	0	43	7	16.27906977	0	0	NA	0	0	NA	0.864122853	0	0	0.135877147	1	0	0.864122853	unphased	0.865352332	1.001422806	0.864122853	0.00125	0.99875	0	0	2	2.15E-09	1	1	1	NA	NA	NA	NA
1351289	1206754908	PD9774b	6	164514885	A	T	-	-	-	-	-	-	20	0	0	37	7	18.91891892	0	0	NA	0	0	NA	0.864122853	0	0	0.135877147	1	0	0.864122853	unphased	1.005679738	1.005679738	1	0.00125	0.99875	0	0	2	7.05E-10	1	1	1	NA	NA	NA	NA
1351289	1206755237	PD9774b	6	168690008	C	T	DACT2	ENST00000366796	r.?	-	-	downstream	33	0	0	39	7	17.94871795	0	0	NA	0	0	NA	0.864122853	0	0	0.135877147	1	0	0.864122853	unphased	0.954106418	0.954106418	1	0.0025	0.9975	0	0	2	1.04E-09	1	1	1	NA	NA	NA	NA
1351289	1206755299	PD9774b	6	169158198	G	T	-	-	-	-	-	-	37	0	0	60	7	11.66666667	0	0	NA	0	0	NA	0.864122853	0	0	0.135877147	1	0	0.864122853	unphased	0.620169172	0.717686344	0.864122853	0.005	0.995	0	0	2	2.39E-08	1	1	1	NA	NA	NA	NA
1351289	1206756292	PD9774b	7	6756490	A	T	-	-	-	-	-	-	17	0	0	38	6	15.78947368	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.860780985	0.860780985	1	0.00375	0.99625	0	0	2	3.76E-08	1	1	1	NA	NA	NA	NA
1351289	1206756294	PD9774b	7	6771305	G	T	-	-	-	-	-	-	28	0	0	47	6	12.76595745	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.695950583	0.695950583	1	0.00625	0.99375	0	0	2	1.41E-07	1	1	1	NA	NA	NA	NA
1351289	1206756562	PD9774b	7	10114469	A	T	-	-	-	-	-	-	28	0	0	47	9	19.14893617	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.043925875	1.043925875	1	0	1	0	0	2	2.24E-12	1	1	1	NA	NA	NA	NA
1351289	1206756719	PD9774b	7	12218245	G	T	-	-	-	-	-	-	38	0	0	62	11	17.74193548	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.967221644	0.967221644	1	0.0025	0.9975	0	0	2	1.96E-14	1	1	1	NA	NA	NA	NA
1351289	1206757173	PD9774b	7	18343772	A	T	HDAC9	ENST00000433709	r.?	-	-	intronic	43	0	0	59	14	23.72881356	0	0	NA	0	0	NA	2	2	0	1	NA	NA	NA	unphased	1.530891197	1.530891197	1	0	0.985	0.015	0	2	6.58E-20	1	1	1	NA	NA	NA	NA
1351289	1206757604	PD9774b	7	24324964	C	T	NPY	CCDS5387.1	r.395c>u	c.105C>T	p.N35N	silent	31	0	0	45	7	15.55555556	118	2	1.694915254	51	3	5.882352941	1	1	0	1	NA	NA	NA	unphased	0.848028674	0.848028674	1	0	1	0	0	2	3.00E-09	1	0.002175924	0.118281986	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206757610	PD9774b	7	24446704	A	T	-	-	-	-	-	-	45	0	0	44	6	13.63636364	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.74340176	0.74340176	1	0	1	0	0	2	9.37E-08	1	1	1	NA	NA	NA	NA
1351289	1206757726	PD9774b	7	26268376	A	T	-	-	-	-	-	-	28	0	0	60	4	6.666666667	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.36344086	0.36344086	1	0.0275	0.9725	0	0	2	0.000243755	1	1	1	NA	NA	NA	NA
1351289	1206757964	PD9774b	7	29260859	C	T	CHN2	CCDS5420.1	r.?	-	-	intronic	45	0	0	48	6	12.5	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.681451613	0.681451613	1	0.00125	0.99875	0	0	2	1.60E-07	1	1	1	NA	NA	NA	NA
1351289	1206757980	PD9774b	7	29441365	C	T	CHN2	CCDS5420.1	r.?	-	-	intronic	33	0	0	44	7	15.90909091	1	0	0	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.867302053	0.867302053	1	0.0025	0.99625	0.00125	0	2	2.55E-09	1	1	1	NA	NA	NA	NA
1351289	1206758093	PD9774b	7	30841638	C	T	FAM188B	CCDS43565.1	r.?	-	-	intronic	33	0	0	37	10	27.02702703	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.473408893	1.473408893	1	0	0.9875	0.0125	0	2	3.01E-15	1	1	1	NA	NA	NA	NA
1351289	1206758126	PD9774b	7	31302686	C	T	-	-	-	-	-	-	29	0	0	51	6	11.76470588	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.641366224	0.641366224	1	0.00625	0.99375	0	0	2	2.32E-07	1	1	1	NA	NA	NA	NA
1351289	1206758180	PD9774b	7	32045793	G	T	PDE1C	CCDS5437.1	r.?	-	-	intronic	40	0	0	55	8	14.54545455	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.792961877	0.792961877	1	0.00375	0.99625	0	0	2	3.86E-10	1	1	1	NA	NA	NA	NA
1351289	1206758206	PD9774b	7	32443754	C	T	-	-	-	-	-	-	23	0	0	47	12	25.53191489	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.391901167	1.391901167	1	0.00125	0.99125	0.0075	0	2	1.09E-17	1	1	1	NA	NA	NA	NA
1351289	1206758321	PD9774b	7	33620212	C	T	BBS9	CCDS43566.1	r.?	-	-	intronic	31	0	0	45	5	11.11111111	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.605734767	0.605734767	1	0.00625	0.99375	0	0	2	3.23E-06	1	1	1	NA	NA	NA	NA
1351289	1206758627	PD9774b	7	37289207	A	T	ELMO1	CCDS5449.1	r.?	-	-	intronic	26	0	0	40	4	10	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.54516129	0.54516129	1	0.0075	0.9925	0	0	2	4.95E-05	1	1	1	NA	NA	NA	NA
1351289	1206758818	PD9774b	7	39731046	A	T	RALA	CCDS5460.1	r.?	-	-	intronic	30	0	0	50	7	14	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.763225806	0.763225806	1	0.0025	0.9975	0	0	2	6.46E-09	1	1	1	NA	NA	NA	NA
1351289	1206759054	PD9774b	7	43286504	G	T	HECW1	CCDS5469.2	r.?	-	-	intronic	33	0	0	45	10	22.22222222	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.211469534	1.211469534	1	0	0.9975	0.0025	0	2	2.66E-14	1	1	1	NA	NA	NA	NA
1351289	1206759512	PD9774b	7	48912830	C	T	-	-	-	-	-	-	30	0	0	48	6	12.5	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.681451613	0.681451613	1	0.0025	0.9975	0	0	2	1.60E-07	1	1	1	NA	NA	NA	NA
1351289	1206759709	PD9774b	7	51366909	C	T	COBL	CCDS34637.1	r.?	-	-	intronic	33	0	0	48	6	12.5	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.681451613	0.681451613	1	0.005	0.995	0	0	2	1.60E-07	1	1	1	NA	NA	NA	NA
1351289	1206759726	PD9774b	7	51527992	A	T	-	-	-	-	-	-	36	0	0	44	7	15.90909091	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.867302053	0.867302053	1	0.0025	0.9975	0	0	2	2.55E-09	1	1	1	NA	NA	NA	NA
1351289	1206759772	PD9774b	7	52147171	G	T	-	-	-	-	-	-	39	0	0	40	8	20	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.090322581	1.090322581	1	0.0025	0.9975	0	0	2	2.61E-11	1	1	1	NA	NA	NA	NA
1351289	1206760115	PD9774b	7	54471126	A	T	-	-	-	-	-	-	41	0	0	40	6	15	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.817741935	0.817741935	1	0.0025	0.9975	0	0	2	5.18E-08	1	1	1	NA	NA	NA	NA
1351289	1206761680	PD9774b	7	57820486	G	T	-	-	-	-	-	-	38	0	0	45	10	22.22222222	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.433691756	1.433691756	1	0	0.98875	0.01125	0	2	2.66E-14	1	1	1	NA	NA	NA	NA
1351289	1206767316	PD9774b	7	67598896	A	T	-	-	-	-	-	-	31	0	0	48	8	16.66666667	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.075268817	1.075268817	1	0	1	0	0	2	1.23E-10	1	1	1	NA	NA	NA	NA
1351289	1206767421	PD9774b	7	68333410	C	T	-	-	-	-	-	-	43	0	0	41	6	14.63414634	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.944138474	0.944138474	1	0.005	0.995	0	0	2	6.05E-08	1	1	1	NA	NA	NA	NA
1351289	1206767588	PD9774b	7	70064163	G	T	AUTS2	CCDS5539.1	r.?	-	-	intronic	38	0	0	73	7	9.589041096	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.618647813	0.618647813	1	0.01	0.99	0	0	2	9.54E-08	1	1	1	NA	NA	NA	NA
1351289	1206767691	PD9774b	7	70881508	G	T	WBSCR17	CCDS5540.1	r.?	-	-	intronic	38	0	0	54	6	11.11111111	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.716845878	0.716845878	1	0.00375	0.99625	0	0	2	3.29E-07	1	1	1	NA	NA	NA	NA
1351289	1206767891	PD9774b	7	72096841	A	T	-	-	-	-	-	-	23	0	0	40	7	17.5	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.129032258	1.129032258	1	0.00125	0.99875	0	0	2	1.26E-09	1	1	1	NA	NA	NA	NA
1351289	1206767985	PD9774b	7	72692383	C	T	-	-	-	-	-	-	15	0	0	23	4	17.39130435	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.122019635	1.122019635	1	0.0025	0.99625	0.00125	0	2	5.13E-06	1	1	1	NA	NA	NA	NA
1351289	1206768494	PD9774b	7	78005343	A	T	MAGI2	CCDS5594.1	r.?	-	-	intronic	47	0	0	63	6	9.523809524	127	1	0.787401575	351	14	3.988603989	2	1	1	1	NA	NA	NA	unphased	0.614439324	0.614439324	1	0.0075	0.9925	0	0	2	8.32E-07	1	4.82E-09	0.470907927	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206768639	PD9774b	7	79608703	G	T	-	-	-	-	-	-	41	0	0	47	4	8.510638298	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.549073439	0.549073439	1	0.00875	0.99125	0	0	2	9.39E-05	1	1	1	NA	NA	NA	NA
1351289	1206768640	PD9774b	7	79610019	G	T	-	-	-	-	-	-	35	0	0	55	7	12.72727273	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.82111437	0.82111437	1	0.0025	0.9975	0	0	2	1.28E-08	1	1	1	NA	NA	NA	NA
1351289	1206768650	PD9774b	7	79784304	G	T	GNAI1	CCDS5595.1	r.?	-	-	intronic	35	0	0	49	9	18.36734694	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.184990125	1.184990125	1	0	1	0	0	2	3.35E-12	1	1	1	NA	NA	NA	NA
1351289	1206768841	PD9774b	7	82106040	C	T	-	-	-	-	-	-	46	0	0	70	8	11.42857143	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.737327189	0.737327189	1	0.00125	0.99875	0	0	2	2.80E-09	1	1	1	NA	NA	NA	NA
1351289	1206768867	PD9774b	7	82364456	C	T	-	-	-	-	-	-	22	0	0	59	5	8.474576271	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.546746856	0.546746856	1	0.0075	0.9925	0	0	2	1.25E-05	1	1	1	NA	NA	NA	NA
1351289	1206768970	PD9774b	7	83192002	A	T	SEMA3E	CCDS34674.1	r.?	-	-	intronic	34	0	0	60	8	13.33333333	0	0	NA	0	0	NA	2.765129909	1	1	0.234870091	2	1	0.765129909	unphased	0.962232375	0.962232375	1	0.00125	0.99875	0	0	2	7.93E-10	1	1	1	NA	NA	NA	NA
1351289	1206769610	PD9774b	7	91826416	C	T	KRIT1	CCDS5624.1	r.?	-	-	downstream	33	0	0	63	5	7.936507937	0	0	NA	0	0	NA	1.850213785	1	0	0.149786215	1	1	0.850213785	unphased	0.500144975	0.5882579	0.850213785	0.00625	0.99375	0	0	2	1.73E-05	1	1	1	NA	NA	NA	NA
1351289	1206769666	PD9774b	7	93004859	G	T	-	-	-	-	-	-	28	0	0	50	6	12	0	0	NA	0	0	NA	1.850213785	1	0	0.149786215	1	1	0.850213785	unphased	0.756219203	0.889445944	0.850213785	0	1	0	0	2	2.06E-07	1	1	1	NA	NA	NA	NA
1351289	1206769671	PD9774b	7	93137273	G	T	CALCR	CCDS5631.1	r.?	-	-	intronic	33	0	0	66	7	10.60606061	0	0	NA	0	0	NA	1.850213785	1	0	0.149786215	1	1	0.850213785	unphased	0.668375558	0.786126466	0.850213785	0.0025	0.9975	0	0	2	4.70E-08	1	1	1	NA	NA	NA	NA
1351289	1206769676	PD9774b	7	93204550	C	T	CALCR	CCDS5631.1	r.?	-	-	upstream	26	0	0	35	4	11.42857143	0	0	NA	0	0	NA	1.850213785	1	0	0.149786215	1	1	0.850213785	unphased	0.720208764	0.847091375	0.850213785	0.00375	0.99625	0	0	2	2.89E-05	1	1	1	NA	NA	NA	NA
1351289	1206769763	PD9774b	7	94722755	A	T	PPP1R9A	CCDS34683.1	r.?	-	-	intronic	24	0	0	51	9	17.64705882	0	0	NA	0	0	NA	1.850213785	1	0	0.149786215	1	1	0.850213785	unphased	1.112087063	1.112087063	1	0	0.99875	0.00125	0	2	4.92E-12	1	1	1	NA	NA	NA	NA
1351289	1206769929	PD9774b	7	97042206	G	T	-	-	-	-	-	-	41	0	0	55	4	7.272727273	0	0	NA	0	0	NA	1.850213785	1	0	0.149786215	1	1	0.850213785	unphased	0.458314668	0.539058148	0.850213785	0.0075	0.9925	0	0	2	0.000173903	1	1	1	NA	NA	NA	NA
1351289	1206769937	PD9774b	7	97201151	G	T	-	-	-	-	-	-	46	0	0	55	8	14.54545455	0	0	NA	0	0	NA	1.850213785	1	0	0.149786215	1	1	0.850213785	unphased	0.916629336	1.078116296	0.850213785	0.00125	0.9975	0.00125	0	2	3.86E-10	1	1	1	NA	NA	NA	NA
1351289	1206770006	PD9774b	7	97901766	G	T	-	-	-	-	-	-	22	0	0	36	4	11.11111111	0	0	NA	0	0	NA	1.850213785	1	0	0.149786215	1	1	0.850213785	unphased	0.700202965	0.823561059	0.850213785	0.00625	0.99375	0	0	2	3.24E-05	1	1	1	NA	NA	NA	NA
1351289	1206770470	PD9774b	7	101688156	C	T	CUX1	CCDS5721.1	r.?	-	-	intronic	23	0	0	42	6	14.28571429	152	0	0	93	21	22.58064516	1.850213785	1	0	0.149786215	1	1	0.850213785	unphased	0.900260955	1.058864219	0.850213785	0	0.99625	0.00375	0	2	7.02E-08	1	1.25E-28	1	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206770594	PD9774b	7	102379085	C	T	-	-	-	-	-	-	26	0	0	43	9	20.93023256	0	0	NA	0	0	NA	1.850213785	1	0	0.149786215	1	1	0.850213785	unphased	1.318986981	1.318986981	1	0	0.99875	0.00125	0	2	9.45E-13	1	1	1	NA	NA	NA	NA
1351289	1206770678	PD9774b	7	103061240	A	T	SLC26A5	CCDS5733.1	r.499u>a	c.237T>A	p.Y79*	nonsense	36	0	0	54	4	7.407407407	0	0	NA	0	0	NA	1.850213785	1	0	0.149786215	1	1	0.850213785	unphased	0.466801977	0.549040706	0.850213785	0.00875	0.99	0.00125	0	2	0.000161898	1	1	1	NA	NA	NA	NA
1351289	1206770692	PD9774b	7	103227956	A	T	RELN	CCDS47680.1	r.?	-	-	intronic	41	0	0	54	12	22.22222222	0	0	NA	0	0	NA	1.850213785	1	0	0.149786215	1	1	0.850213785	unphased	1.400405931	1.400405931	1	0	0.99	0.01	0	2	6.90E-17	1	1	1	NA	NA	NA	NA
1351289	1206770729	PD9774b	7	103741274	C	T	-	-	-	-	-	-	44	0	0	55	6	10.90909091	0	0	NA	0	0	NA	1.850213785	1	0	0.149786215	1	1	0.850213785	unphased	0.687472002	0.808587222	0.850213785	0	1	0	0	2	3.67E-07	1	1	1	NA	NA	NA	NA
1351289	1206770747	PD9774b	7	103985129	A	T	LHFPL3	ENST00000424859	r.?	-	-	intronic	32	0	0	59	7	11.86440678	0	0	NA	1	0	0	1.850213785	1	0	0.149786215	1	1	0.850213785	unphased	0.747674353	0.879395708	0.850213785	0.00125	0.99875	0	0	2	2.12E-08	1	1	1	NA	NA	NA	NA
1351289	1206771290	PD9774b	7	110145738	G	T	-	-	-	-	-	-	36	0	0	57	8	14.03508772	0	0	NA	0	0	NA	1.850213785	1	0	0.149786215	1	1	0.850213785	unphased	0.884466904	1.040287654	0.850213785	0.00125	0.99875	0	0	2	5.19E-10	1	1	1	NA	NA	NA	NA
1351289	1206771297	PD9774b	7	110314373	C	T	IMMP2L	CCDS5753.1	r.?	-	-	intronic	32	0	0	54	9	16.66666667	0	0	NA	0	0	NA	1.850213785	1	0	0.149786215	1	1	0.850213785	unphased	1.050304448	1.050304448	1	0.00125	0.9975	0.00125	0	2	8.48E-12	1	1	1	NA	NA	NA	NA
1351289	1206771440	PD9774b	7	112530857	C	T	C7orf60	CCDS43634.1	r.?	-	-	intronic	26	0	0	51	5	9.803921569	0	0	NA	0	0	NA	1.850213785	1	0	0.149786215	1	1	0.850213785	unphased	0.617826146	0.726671523	0.850213785	0.00375	0.99625	0	0	2	6.06E-06	1	1	1	NA	NA	NA	NA
1351289	1206771646	PD9774b	7	115213497	A	T	-	-	-	-	-	-	35	0	0	53	7	13.20754717	0	0	NA	0	0	NA	1.850213785	1	0	0.149786215	1	1	0.850213785	unphased	0.832316732	0.978949939	0.850213785	0.0025	0.9975	0	0	2	9.85E-09	1	1	1	NA	NA	NA	NA
1351289	1206771784	PD9774b	7	116607746	A	T	ST7OT3	CCDS5770.1	r.?	-	-	intronic	31	0	0	49	8	16.32653061	0	0	NA	0	0	NA	1.850213785	1	0	0.149786215	1	1	0.850213785	unphased	1.028869663	1.028869663	1	0	0.9975	0.0025	0	2	1.47E-10	1	1	1	NA	NA	NA	NA
1351289	1206771826	PD9774b	7	117340478	C	T	-	-	-	-	-	-	41	0	0	50	11	22	0	0	NA	0	0	NA	1.850213785	1	0	0.149786215	1	1	0.850213785	unphased	1.386401871	1.386401871	1	0	0.99375	0.00625	0	2	1.52E-15	1	1	1	NA	NA	NA	NA
1351289	1206771899	PD9774b	7	118338063	G	T	-	-	-	-	-	-	26	0	0	50	8	16	0	0	NA	0	0	NA	1.850213785	1	0	0.149786215	1	1	0.850213785	unphased	1.00829227	1.00829227	1	0.00125	0.9975	0.00125	0	2	1.74E-10	1	1	1	NA	NA	NA	NA
1351289	1206772023	PD9774b	7	120269221	C	T	KCND2	CCDS5776.1	r.?	-	-	intronic	43	0	0	47	7	14.89361702	0	0	NA	0	0	NA	1.850213785	1	0	0.149786215	1	1	0.850213785	unphased	0.938569932	0.938569932	1	0.00125	0.99875	0	0	2	4.12E-09	1	1	1	NA	NA	NA	NA
1351289	1206772164	PD9774b	7	122461076	C	T	CADPS2	CCDS47691.1	r.?	-	-	intronic	21	0	0	49	5	10.20408163	0	0	NA	0	0	NA	1.850213785	1	0	0.149786215	1	1	0.850213785	unphased	0.64304354	0.756331585	0.850213785	0.005	0.995	0	0	2	4.96E-06	1	1	1	NA	NA	NA	NA
1351289	1206772213	PD9774b	7	123049692	G	T	-	-	-	-	-	-	35	0	0	53	7	13.20754717	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.720024346	0.720024346	1	0.00375	0.995	0.00125	0	2	9.85E-09	1	1	1	NA	NA	NA	NA
1351289	1206772214	PD9774b	7	123059225	G	T	-	-	-	-	-	-	37	0	0	45	5	11.11111111	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.605734767	0.605734767	1	0.0025	0.9975	0	0	2	3.23E-06	1	1	1	NA	NA	NA	NA
1351289	1206772215	PD9774b	7	123067833	A	T	-	-	-	-	-	-	28	0	0	62	4	6.451612903	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.351716961	0.351716961	1	0.03375	0.96625	0	0	2	0.000276647	1	1	1	NA	NA	NA	NA
1351289	1206772269	PD9774b	7	124000694	G	T	-	-	-	-	-	-	37	0	0	57	7	12.28070175	2	0	0	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.792303339	0.792303339	1	0	1	0	0	2	1.66E-08	1	1	1	NA	NA	NA	NA
1351289	1206772472	PD9774b	7	125994924	C	T	-	-	-	-	-	-	34	0	0	44	10	22.72727273	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.46627566	1.46627566	1	0.00125	0.995	0.00375	0	2	2.08E-14	1	1	1	NA	NA	NA	NA
1351289	1206772478	PD9774b	7	126037084	G	T	-	-	-	-	-	-	24	0	0	58	6	10.34482759	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.667408231	0.667408231	1	0.00375	0.99625	0	0	2	5.06E-07	1	1	1	NA	NA	NA	NA
1351289	1206772500	PD9774b	7	126302476	A	T	GRM8	CCDS5794.1	r.?	-	-	intronic	36	0	0	60	5	8.333333333	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.537634409	0.537634409	1	0.00875	0.99125	0	0	2	1.36E-05	1	1	1	NA	NA	NA	NA
1351289	1206772714	PD9774b	7	128478248	C	T	FLNC	CCDS43644.1	r.?	-	-	intronic	29	0	0	36	6	16.66666667	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.075268817	1.075268817	1	0	0.99875	0.00125	0	2	2.68E-08	1	1	1	NA	NA	NA	NA
1351289	1206772862	PD9774b	7	129766341	C	T	KLHDC10	CCDS5815.1	r.?	-	-	intronic	24	0	0	50	6	12	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.774193548	0.774193548	1	0.0025	0.9975	0	0	2	2.06E-07	1	1	1	NA	NA	NA	NA
1351289	1206772908	PD9774b	7	130318303	A	T	COPG2	ENST00000330992	r.?	-	-	intronic	34	0	0	45	9	20	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.290322581	1.290322581	1	0	0.99625	0.00375	0	2	1.47E-12	1	1	1	NA	NA	NA	NA
1351289	1206773031	PD9774b	7	131782401	A	T	-	-	-	-	-	-	31	0	0	58	11	18.96551724	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.223581758	1.223581758	1	0.00125	0.99875	0	0	2	8.96E-15	1	1	1	NA	NA	NA	NA
1351289	1206773032	PD9774b	7	131787583	A	T	-	-	-	-	-	-	34	0	0	63	6	9.523809524	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.614439324	0.614439324	1	0.0075	0.9925	0	0	2	8.32E-07	1	1	1	NA	NA	NA	NA
1351289	1206773143	PD9774b	7	133316618	C	T	EXOC4	CCDS5829.1	r.?	-	-	intronic	37	0	0	63	11	17.46031746	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.126472094	1.126472094	1	0.00125	0.9975	0.00125	0	2	2.37E-14	1	1	1	NA	NA	NA	NA
1351289	1206773175	PD9774b	7	133621552	G	T	EXOC4	CCDS5829.1	r.?	-	-	intronic	22	0	0	46	6	13.04347826	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.841514727	0.841514727	1	0	1	0	0	2	1.23E-07	1	1	1	NA	NA	NA	NA
1351289	1206773218	PD9774b	7	134158924	A	T	-	-	-	-	-	-	37	0	0	59	11	18.6440678	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.202843084	1.202843084	1	0	0.99875	0.00125	0	2	1.10E-14	1	1	1	NA	NA	NA	NA
1351289	1206773676	PD9774b	7	139173996	G	T	-	-	-	-	-	-	33	0	0	54	7	12.96296296	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.836320191	0.836320191	1	0.00375	0.995	0.00125	0	2	1.13E-08	1	1	1	NA	NA	NA	NA
1351289	1206773772	PD9774b	7	140183410	C	T	MKRN9P	CCDS5860.1	r.?	-	-	upstream	35	0	0	53	5	9.433962264	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.608642727	0.608642727	1	0.0025	0.9975	0	0	2	7.34E-06	1	1	1	NA	NA	NA	NA
1351289	1206774035	PD9774b	7	142142352	G	T	-	-	-	-	-	-	30	0	0	58	13	22.4137931	0	0	NA	0	0	NA	2.743963828	1	1	0.256036172	2	1	0.743963828	unphased	1.612801681	0.924790787	1.743963828	0	1	0	0	2	3.12E-18	1	1	1	NA	NA	NA	NA
1351289	1206774231	PD9774b	7	142724964	C	T	OR9A2	CCDS34767.1	r.?	-	-	upstream	29	0	0	65	8	12.30769231	0	0	NA	0	0	NA	2.743963828	1	1	0.256036172	2	1	0.743963828	unphased	0.885609444	0.885609444	1	0	1	0	0	2	1.53E-09	1	1	1	NA	NA	NA	NA
1351289	1206774430	PD9774b	7	145068091	A	T	-	-	-	-	-	-	33	0	0	52	4	7.692307692	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.496277916	0.496277916	1	0.00625	0.99375	0	0	2	0.000139698	1	1	1	NA	NA	NA	NA
1351289	1206774493	PD9774b	7	146050839	G	T	CNTNAP2	CCDS5889.1	r.?	-	-	intronic	31	0	0	64	15	23.4375	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.512096774	1.512096774	1	0	0.99	0.01	0	2	3.87E-21	1	1	1	NA	NA	NA	NA
1351289	1206774567	PD9774b	7	146860740	G	T	CNTNAP2	CCDS5889.1	r.?	-	-	intronic	44	0	0	65	10	15.38461538	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.992555831	0.992555831	1	0	1	0	0	2	1.36E-12	1	1	1	NA	NA	NA	NA
1351289	1206774762	PD9774b	7	148727520	A	T	PDIA4	CCDS5893.1	r.?	-	-	upstream	25	0	0	37	8	21.62162162	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.39494333	1.39494333	1	0	0.99125	0.00875	0	2	1.33E-11	1	1	1	NA	NA	NA	NA
1351289	1206774835	PD9774b	7	149408747	G	T	KRBA1	ENST00000319551	r.?	-	-	upstream	36	0	0	54	10	18.51851852	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.19474313	1.19474313	1	0.00125	0.995	0.00375	0	2	1.91E-13	1	1	1	NA	NA	NA	NA
1351289	1206774863	PD9774b	7	149714445	G	T	-	-	-	-	-	-	25	0	0	46	5	10.86956522	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.701262272	0.701262272	1	0.00375	0.99625	0	0	2	3.61E-06	1	1	1	NA	NA	NA	NA
1351289	1206774937	PD9774b	7	150037361	G	T	LRRC61	CCDS5901.1	r.?	-	-	downstream	43	0	0	45	7	15.55555556	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.003584229	1.003584229	1	0.00125	0.9975	0.00125	0	2	3.00E-09	1	1	1	NA	NA	NA	NA
1351289	1206775706	PD9774b	7	152624346	A	T	-	-	-	-	-	-	39	0	0	58	7	12.06896552	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.778642937	0.778642937	1	0.0025	0.9975	0	0	2	1.88E-08	1	1	1	NA	NA	NA	NA
1351289	1206775747	PD9774b	7	153102946	C	T	-	-	-	-	-	-	22	0	0	38	5	13.15789474	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.848896435	0.848896435	1	0.00125	0.99875	0	0	2	1.37E-06	1	1	1	NA	NA	NA	NA
1351289	1206776086	PD9774b	7	155769943	G	T	-	-	-	-	-	-	27	0	0	78	10	12.82051282	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.827129859	0.827129859	1	0.00125	0.99875	0	0	2	9.02E-12	1	1	1	NA	NA	NA	NA
1351289	1206776348	PD9774b	7	157842710	C	T	PTPRN2	CCDS5949.1	r.?	-	-	intronic	31	0	0	54	11	20.37037037	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.314217443	1.314217443	1	0.00125	0.995	0.00375	0	2	3.84E-15	1	1	1	NA	NA	NA	NA
1351289	1206776585	PD9774b	7	158173339	G	T	PTPRN2	CCDS5949.1	r.?	-	-	intronic	31	0	0	55	10	18.18181818	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.173020528	1.173020528	1	0	0.99875	0.00125	0	2	2.33E-13	1	1	1	NA	NA	NA	NA
1351289	1206776923	PD9774b	8	1024230	C	T	C8orf68	ENST00000450568	r.?	-	-	intronic	43	0	0	68	14	20.58823529	323	0	0	92	23	25	1.490411309	1	0	0.509588691	2	0	0.490411309	unphased	1.223357926	1.223357926	1	0	0.9975	0.0025	0	2	5.84E-19	1	2.41E-32	1	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206777116	PD9774b	8	2097021	A	T	MYOM2	CCDS5957.1	r.?	-	-	downstream	42	0	0	49	12	24.48979592	0	0	NA	0	0	NA	1.490411309	1	0	0.509588691	2	0	0.490411309	unphased	1.455189603	1.455189603	1	0	0.99375	0.00625	0	2	1.90E-17	1	1	1	NA	NA	NA	NA
1351289	1206777175	PD9774b	8	2232899	A	T	-	-	-	-	-	-	58	0	0	82	10	12.19512195	0	0	NA	0	0	NA	1.490411309	1	0	0.509588691	2	0	0.490411309	unphased	0.724637099	0.724637099	1	0.0025	0.9975	0	0	2	1.51E-11	1	1	1	NA	NA	NA	NA
1351289	1206777345	PD9774b	8	3469962	C	T	CSMD1	ENST00000318252	r.?	-	-	intronic	34	0	0	51	11	21.56862745	0	0	NA	0	0	NA	1.490411309	1	0	0.509588691	2	0	0.490411309	unphased	1.281613065	1.281613065	1	0	0.99625	0.00375	0	2	1.94E-15	1	1	1	NA	NA	NA	NA
1351289	1206777365	PD9774b	8	3732589	C	T	-	-	-	-	-	-	26	0	0	55	13	23.63636364	0	0	NA	0	0	NA	1.490411309	1	0	0.509588691	2	0	0.490411309	unphased	1.40447845	1.40447845	1	0.00125	0.9975	0.00125	0	2	1.46E-18	1	1	1	NA	NA	NA	NA
1351289	1206777448	PD9774b	8	4630304	A	T	-	-	-	-	-	-	35	0	0	47	13	27.65957447	0	0	NA	0	0	NA	1.490411309	1	0	0.509588691	2	0	0.490411309	unphased	1.643538612	1.102741641	1.490411309	0.00125	0.99875	0	0	2	1.47E-19	1	1	1	NA	NA	NA	NA
1351289	1206777519	PD9774b	8	5466024	C	T	-	-	-	-	-	-	30	0	0	48	8	16.66666667	0	0	NA	0	0	NA	1.490411309	1	0	0.509588691	2	0	0.490411309	unphased	0.990337369	0.990337369	1	0.00125	0.9975	0.00125	0	2	1.23E-10	1	1	1	NA	NA	NA	NA
1351289	1206777534	PD9774b	8	5585571	G	T	-	-	-	-	-	-	40	0	0	42	4	9.523809524	0	0	NA	0	0	NA	1.490411309	1	0	0.509588691	2	0	0.490411309	unphased	0.565907068	1.153943756	0.490411309	0.00125	0.99875	0	0	2	6.01E-05	1	1	1	NA	NA	NA	NA
1351289	1206777562	PD9774b	8	5985202	G	T	-	-	-	-	-	-	26	0	0	67	10	14.92537313	1	0	0	0	0	NA	1.490411309	1	0	0.509588691	2	0	0.490411309	unphased	0.886869285	0.886869285	1	0	0.99875	0.00125	0	2	1.87E-12	1	1	1	NA	NA	NA	NA
1351289	1206777583	PD9774b	8	6109615	C	T	-	-	-	-	-	-	45	0	0	45	7	15.55555556	0	0	NA	0	0	NA	1.490411309	1	0	0.509588691	2	0	0.490411309	unphased	0.924314877	0.924314877	1	0	0.99875	0.00125	0	2	3.00E-09	1	1	1	NA	NA	NA	NA
1351289	1206778060	PD9774b	8	10164527	G	T	MSRA	CCDS47799.1	r.?	-	-	intronic	31	0	0	51	5	9.803921569	0	0	NA	0	0	NA	1.490411309	1	0	0.509588691	2	0	0.490411309	unphased	0.582551393	1.187883279	0.490411309	0	0.9975	0.0025	0	2	6.06E-06	1	1	1	NA	NA	NA	NA
1351289	1206778162	PD9774b	8	11576071	C	T	GATA4	CCDS5983.1	r.?	-	-	intronic	31	0	0	52	10	19.23076923	0	0	NA	0	0	NA	0.841880723	0	0	0.158119277	1	0	0.841880723	unphased	1.017979544	1.017979544	1	0	0.99875	0.00125	0	2	1.28E-13	1	1	1	NA	NA	NA	NA
1351289	1206778772	PD9774b	8	17531874	A	T	MTUS1	CCDS43717.1	r.?	-	-	intronic	26	0	0	56	10	17.85714286	0	0	NA	0	0	NA	0.841880723	0	0	0.158119277	1	0	0.841880723	unphased	0.945266719	0.945266719	1	0	1	0	0	2	2.82E-13	1	1	1	NA	NA	NA	NA
1351289	1206778814	PD9774b	8	18110336	G	T	-	-	-	-	-	-	49	0	0	53	7	13.20754717	0	0	NA	0	0	NA	0.841880723	0	0	0.158119277	1	0	0.841880723	unphased	0.699140668	0.830450975	0.841880723	0	1	0	0	2	9.85E-09	1	1	1	NA	NA	NA	NA
1351289	1206779454	PD9774b	8	26811005	G	T	-	-	-	-	-	-	35	0	0	47	7	14.89361702	0	0	NA	0	0	NA	0.841880723	0	0	0.158119277	1	0	0.841880723	unphased	0.788392668	0.936465993	0.841880723	0	1	0	0	2	4.12E-09	1	1	1	NA	NA	NA	NA
1351289	1206779898	PD9774b	8	32065820	A	T	NRG1	CCDS47836.1	r.?	-	-	intronic	19	0	0	41	9	21.95121951	0	0	NA	0	0	NA	0.841880723	0	0	0.158119277	1	0	0.841880723	unphased	1.161986406	1.161986406	1	0	1	0	0	2	5.92E-13	1	1	1	NA	NA	NA	NA
1351289	1206779928	PD9774b	8	32349347	G	T	NRG1	CCDS47836.1	r.?	-	-	intronic	32	0	0	68	14	20.58823529	0	0	NA	0	0	NA	0.841880723	0	0	0.158119277	1	0	0.841880723	unphased	1.089836923	1.089836923	1	0	1	0	0	2	5.84E-19	1	1	1	NA	NA	NA	NA
1351289	1206780069	PD9774b	8	34715209	A	T	-	-	-	-	-	-	40	0	0	42	8	19.04761905	0	0	NA	0	0	NA	0.841880723	0	0	0.158119277	1	0	0.841880723	unphased	1.0082845	1.0082845	1	0.00125	0.99875	0	0	2	3.96E-11	1	1	1	NA	NA	NA	NA
1351289	1206780078	PD9774b	8	34860961	C	T	-	-	-	-	-	-	33	0	0	56	7	12.5	0	0	NA	0	0	NA	0.841880723	0	0	0.158119277	1	0	0.841880723	unphased	0.661686703	0.78596253	0.841880723	0.00125	0.99875	0	0	2	1.46E-08	1	1	1	NA	NA	NA	NA
1351289	1206780118	PD9774b	8	35604259	G	T	UNC5D	CCDS6093.2	r.?	-	-	intronic	32	0	0	38	7	18.42105263	0	0	NA	0	0	NA	0.841880723	0	0	0.158119277	1	0	0.841880723	unphased	0.975117247	0.975117247	1	0.00125	0.99875	0	0	2	8.61E-10	1	1	1	NA	NA	NA	NA
1351289	1206780136	PD9774b	8	36105720	G	T	-	-	-	-	-	-	28	0	0	44	4	9.090909091	0	0	NA	0	0	NA	0.841880723	0	0	0.158119277	1	0	0.841880723	unphased	0.481226693	0.571609113	0.841880723	0.00625	0.99375	0	0	2	7.23E-05	1	1	1	NA	NA	NA	NA
1351289	1206780155	PD9774b	8	36419675	A	T	-	-	-	-	-	-	38	0	0	40	5	12.5	0	0	NA	0	0	NA	0.841880723	0	0	0.158119277	1	0	0.841880723	unphased	0.661686703	0.78596253	0.841880723	0.0025	0.9975	0	0	2	1.78E-06	1	1	1	NA	NA	NA	NA
1351289	1206781572	PD9774b	8	47469037	A	T	-	-	-	-	-	-	35	0	0	37	7	18.91891892	0	0	NA	0	0	NA	0.841880723	0	0	0.158119277	1	0	0.841880723	unphased	1.001471767	1.001471767	1	0	1	0	0	2	7.05E-10	1	1	1	NA	NA	NA	NA
1351289	1206781632	PD9774b	8	48338801	G	T	KIAA0146	CCDS43737.1	r.?	-	-	intronic	29	0	0	47	5	10.63829787	0	0	NA	0	0	NA	0.841880723	0	0	0.158119277	1	0	0.841880723	unphased	0.56313762	0.668904281	0.841880723	0.00875	0.99	0.00125	0	2	4.02E-06	1	1	1	NA	NA	NA	NA
1351289	1206782000	PD9774b	8	53185825	C	T	ST18	CCDS6149.1	r.?	-	-	intronic	26	0	0	38	8	21.05263158	0	0	NA	0	0	NA	0.841880723	0	0	0.158119277	1	0	0.841880723	unphased	1.114419711	1.114419711	1	0	1	0	0	2	1.67E-11	1	1	1	NA	NA	NA	NA
1351289	1206782189	PD9774b	8	56325663	A	T	XKR4	CCDS34893.1	r.?	-	-	intronic	33	0	0	50	7	14	0	0	NA	0	0	NA	0.841880723	0	0	0.158119277	1	0	0.841880723	unphased	0.741089108	0.880278034	0.841880723	0.00125	0.99875	0	0	2	6.46E-09	1	1	1	NA	NA	NA	NA
1351289	1206782494	PD9774b	8	61543555	G	T	ENSG00000228862	ENST00000437779	r.?	-	-	intronic	42	0	0	41	7	17.07317073	0	0	NA	0	0	NA	0.841880723	0	0	0.158119277	1	0	0.841880723	unphased	0.903767205	1.073509797	0.841880723	0.0025	0.9975	0	0	2	1.51E-09	1	1	1	NA	NA	NA	NA
1351289	1206782666	PD9774b	8	64154025	G	T	-	-	-	-	-	-	36	0	0	50	10	20	0	0	NA	0	0	NA	0.841880723	0	0	0.158119277	1	0	0.841880723	unphased	1.058698725	1.058698725	1	0	0.99875	0.00125	0	2	8.36E-14	1	1	1	NA	NA	NA	NA
1351289	1206782708	PD9774b	8	65005908	C	T	-	-	-	-	-	-	45	0	0	42	7	16.66666667	0	0	NA	0	0	NA	0.841880723	0	0	0.158119277	1	0	0.841880723	unphased	0.882248938	1.04795004	0.841880723	0	1	0	0	2	1.81E-09	1	1	1	NA	NA	NA	NA
1351289	1206782940	PD9774b	8	68993637	G	T	PREX2	CCDS6201.1	r.?	-	-	intronic	29	0	0	37	5	13.51351351	0	0	NA	0	0	NA	0.841880723	0	0	0.158119277	1	0	0.841880723	unphased	0.715336977	0.849689222	0.841880723	0.00125	0.9975	0.00125	0	2	1.19E-06	1	1	1	NA	NA	NA	NA
1351289	1206783026	PD9774b	8	70586745	G	T	SLCO5A1	CCDS6205.1	r.?	-	-	intronic	28	0	0	48	9	18.75	0	0	NA	0	0	NA	0.841880723	0	0	0.158119277	1	0	0.841880723	unphased	0.992530055	0.992530055	1	0.00125	0.99875	0	0	2	2.75E-12	1	1	1	NA	NA	NA	NA
1351289	1206783092	PD9774b	8	71632319	G	T	XKR9	CCDS34905.1	r.?	-	-	intronic	42	0	0	40	4	10	0	0	NA	0	0	NA	0.841880723	0	0	0.158119277	1	0	0.841880723	unphased	0.529349363	0.628770024	0.841880723	0.0025	0.9975	0	0	2	4.95E-05	1	1	1	NA	NA	NA	NA
1351289	1206783266	PD9774b	8	74215059	G	T	RDH10	CCDS6213.1	r.?	-	-	intronic	35	0	0	55	12	21.81818182	0	0	NA	0	0	NA	0.841880723	0	0	0.158119277	1	0	0.841880723	unphased	1.154944064	1.154944064	1	0.00125	0.99625	0.0025	0	2	8.78E-17	1	1	1	NA	NA	NA	NA
1351289	1206783438	PD9774b	8	77025838	C	T	-	-	-	-	-	-	36	0	0	40	4	10	0	0	NA	0	0	NA	0.841880723	0	0	0.158119277	1	0	0.841880723	unphased	0.529349363	0.628770024	0.841880723	0.0075	0.9925	0	0	2	4.95E-05	1	1	1	NA	NA	NA	NA
1351289	1206783472	PD9774b	8	77675692	C	T	ZFHX4	CCDS47878.1	r.?	-	-	intronic	30	0	0	59	6	10.16949153	0	0	NA	0	0	NA	0.841880723	0	0	0.158119277	1	0	0.841880723	unphased	0.538321386	0.639427143	0.841880723	0.00625	0.99375	0	0	2	5.61E-07	1	1	1	NA	NA	NA	NA
1351289	1206783521	PD9774b	8	78420499	C	T	-	-	-	-	-	-	51	0	0	47	11	23.40425532	0	0	NA	0	0	NA	0.841880723	0	0	0.158119277	1	0	0.841880723	unphased	1.238902764	1.238902764	1	0	0.99875	0.00125	0	2	7.21E-16	1	1	1	NA	NA	NA	NA
1351289	1206783564	PD9774b	8	78949994	G	T	-	-	-	-	-	-	37	0	0	48	8	16.66666667	0	0	NA	0	0	NA	0.841880723	0	0	0.158119277	1	0	0.841880723	unphased	0.882248938	1.04795004	0.841880723	0.00125	0.99625	0.0025	0	2	1.23E-10	1	1	1	NA	NA	NA	NA
1351289	1206783629	PD9774b	8	79894151	G	T	-	-	-	-	-	-	37	0	0	43	4	9.302325581	0	0	NA	0	0	NA	0.841880723	0	0	0.158119277	1	0	0.841880723	unphased	0.492418012	0.584902348	0.841880723	0.005	0.995	0	0	2	6.60E-05	1	1	1	NA	NA	NA	NA
1351289	1206783647	PD9774b	8	80214466	C	T	-	-	-	-	-	-	48	0	0	45	6	13.33333333	0	0	NA	0	0	NA	0.841880723	0	0	0.158119277	1	0	0.841880723	unphased	0.70579915	0.838360032	0.841880723	0.00125	0.9975	0.00125	0	2	1.08E-07	1	1	1	NA	NA	NA	NA
1351289	1206783759	PD9774b	8	82011816	C	T	PAG1	CCDS6227.1	r.?	-	-	intronic	33	0	0	64	7	10.9375	0	0	NA	0	0	NA	1.315636663	1	0	0.684363337	2	0	0.315636663	unphased	0.630792921	0.630792921	1	0.005	0.995	0	0	2	3.78E-08	1	1	1	NA	NA	NA	NA
1351289	1206783819	PD9774b	8	83306620	A	T	-	-	-	-	-	-	42	0	0	52	4	7.692307692	0	0	NA	0	0	NA	1.315636663	1	0	0.684363337	2	0	0.315636663	unphased	0.443634582	1.405522977	0.315636663	0	0.9975	0.0025	0	2	0.000139698	1	1	1	NA	NA	NA	NA
1351289	1206783833	PD9774b	8	83528482	A	T	-	-	-	-	-	-	45	0	0	62	10	16.12903226	0	0	NA	0	0	NA	1.315636663	1	0	0.684363337	2	0	0.315636663	unphased	0.930201543	0.930201543	1	0	1	0	0	2	8.29E-13	1	1	1	NA	NA	NA	NA
1351289	1206783924	PD9774b	8	84556720	A	T	-	-	-	-	-	-	35	0	0	49	4	8.163265306	0	0	NA	0	0	NA	1.315636663	1	0	0.684363337	2	0	0.315636663	unphased	0.470795883	1.491575405	0.315636663	0	0.9975	0.0025	0	2	0.000110643	1	1	1	NA	NA	NA	NA
1351289	1206783959	PD9774b	8	85424411	C	T	-	-	-	-	-	-	30	0	0	54	5	9.259259259	0	0	NA	0	0	NA	1.315636663	1	0	0.684363337	2	0	0.315636663	unphased	0.534004589	0.534004589	1	0.01125	0.98875	0	0	2	8.06E-06	1	1	1	NA	NA	NA	NA
1351289	1206783970	PD9774b	8	85577780	G	T	-	-	-	-	-	-	26	0	0	40	7	17.5	0	0	NA	0	0	NA	1.315636663	1	0	0.684363337	2	0	0.315636663	unphased	1.009268674	1.009268674	1	0.0025	0.9975	0	0	2	1.26E-09	1	1	1	NA	NA	NA	NA
1351289	1206783977	PD9774b	8	85679286	A	T	RALYL	ENST00000399361	r.?	-	-	intronic	30	0	0	66	6	9.090909091	192	1	0.520833333	328	28	8.536585366	1.315636663	1	0	0.684363337	2	0	0.315636663	unphased	0.524295415	0.524295415	1	0.01	0.99	0	0	2	1.10E-06	1	2.43E-25	0.618028022	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206783981	PD9774b	8	85707126	C	T	RALYL	ENST00000399361	r.?	-	-	intronic	31	0	0	47	8	17.0212766	0	0	NA	0	0	NA	1.315636663	1	0	0.684363337	2	0	0.315636663	unphased	0.981659501	0.981659501	1	0.00125	0.99875	0	0	2	1.03E-10	1	1	1	NA	NA	NA	NA
1351289	1206784244	PD9774b	8	87531741	A	T	CPNE3	CCDS6243.1	r.?	-	-	intronic	36	0	0	44	10	22.72727273	0	0	NA	0	0	NA	1.315636663	1	0	0.684363337	2	0	0.315636663	unphased	1.310738538	1.310738538	1	0	0.99875	0.00125	0	2	2.08E-14	1	1	1	NA	NA	NA	NA
1351289	1206784345	PD9774b	8	88510711	G	T	-	-	-	-	-	-	40	0	0	85	8	9.411764706	0	0	NA	0	0	NA	3.486636081	3	0	0.513363919	4	0	0.486636081	unphased	0.747129316	0.747129316	1	0	1	0	0	2	1.34E-08	1	1	1	NA	NA	NA	NA
1351289	1206784349	PD9774b	8	88533252	C	T	-	-	-	-	-	-	37	0	0	102	17	16.66666667	0	0	NA	0	0	NA	3.486636081	3	0	0.513363919	4	0	0.486636081	unphased	1.323041497	1.323041497	1	0	0.99625	0.00375	0	2	4.90E-21	1	1	1	NA	NA	NA	NA
1351289	1206784377	PD9774b	8	88769020	G	T	-	-	-	-	-	-	23	0	0	73	26	35.61643836	0	0	NA	0	0	NA	3.486636081	3	0	0.513363919	4	0	0.486636081	unphased	2.827321556	0.942440519	3	0	1	0	0	2	5.09E-41	1	1	1	NA	NA	NA	NA
1351289	1206784454	PD9774b	8	89615012	G	T	-	-	-	-	-	-	26	0	0	74	29	39.18918919	0	0	NA	0	0	NA	3.486636081	3	0	0.513363919	4	0	0.486636081	unphased	3.110935413	1.036978471	3	0	1	0	0	2	4.68E-47	1	1	1	NA	NA	NA	NA
1351289	1206784470	PD9774b	8	89798544	G	T	-	-	-	-	-	-	51	0	0	69	12	17.39130435	0	0	NA	0	0	NA	3.486636081	3	0	0.513363919	4	0	0.486636081	unphased	1.380565041	1.380565041	1	0	0.99125	0.00875	0	2	1.65E-15	1	1	1	NA	NA	NA	NA
1351289	1206784492	PD9774b	8	89912810	A	T	-	-	-	-	-	-	35	0	0	83	12	14.45783133	0	0	NA	0	0	NA	3.486636081	3	0	0.513363919	4	0	0.486636081	unphased	1.147698648	1.147698648	1	0	0.99875	0.00125	0	2	1.70E-14	1	1	1	NA	NA	NA	NA
1351289	1206784573	PD9774b	8	90696346	A	T	-	-	-	-	-	-	28	0	0	72	11	15.27777778	0	0	NA	0	0	NA	3.486636081	3	0	0.513363919	4	0	0.486636081	unphased	1.212788039	1.212788039	1	0.0025	0.99625	0.00125	0	2	1.12E-13	1	1	1	NA	NA	NA	NA
1351289	1206784612	PD9774b	8	91114768	A	T	-	-	-	-	-	-	39	0	0	74	9	12.16216216	0	0	NA	0	0	NA	3.486636081	3	0	0.513363919	4	0	0.486636081	unphased	0.965462714	0.965462714	1	0	0.9975	0.0025	0	2	1.61E-10	1	1	1	NA	NA	NA	NA
1351289	1206784639	PD9774b	8	91345953	C	T	-	-	-	-	-	-	26	0	0	58	5	8.620689655	1	0	0	0	0	NA	3.486636081	3	0	0.513363919	4	0	0.486636081	unphased	0.684331809	0.684331809	1	0	1	0	0	2	1.15E-05	1	1	1	NA	NA	NA	NA
1351289	1206784775	PD9774b	8	92447243	C	T	-	-	-	-	-	-	36	0	0	77	9	11.68831169	0	0	NA	0	0	NA	3.486636081	3	0	0.513363919	4	0	0.486636081	unphased	0.927847284	0.927847284	1	0	1	0	0	2	2.32E-10	1	1	1	NA	NA	NA	NA
1351289	1206784867	PD9774b	8	93448475	C	T	-	-	-	-	-	-	45	0	0	84	6	7.142857143	0	0	NA	0	0	NA	3.486636081	3	0	0.513363919	4	0	0.486636081	unphased	0.567017785	1.165178266	0.486636081	0.00125	0.99875	0	0	2	4.55E-06	1	1	1	NA	NA	NA	NA
1351289	1206784880	PD9774b	8	93565461	G	T	-	-	-	-	-	-	46	0	0	71	6	8.450704225	0	0	NA	0	0	NA	3.486636081	3	0	0.513363919	4	0	0.486636081	unphased	0.670837942	0.670837942	1	0.00625	0.99375	0	0	2	1.69E-06	1	1	1	NA	NA	NA	NA
1351289	1206784886	PD9774b	8	93628601	A	T	-	-	-	-	-	-	32	0	0	89	12	13.48314607	0	0	NA	0	0	NA	3.486636081	3	0	0.513363919	4	0	0.486636081	unphased	1.070325706	1.070325706	1	0	0.99875	0.00125	0	2	4.06E-14	1	1	1	NA	NA	NA	NA
1351289	1206784897	PD9774b	8	93689227	G	T	-	-	-	-	-	-	30	0	0	77	24	31.16883117	0	0	NA	0	0	NA	3.486636081	3	0	0.513363919	4	0	0.486636081	unphased	2.474259424	0.995022731	2.486636081	0	1	0	0	2	2.53E-36	1	1	1	NA	NA	NA	NA
1351289	1206784903	PD9774b	8	93801276	G	T	-	-	-	-	-	-	49	0	0	67	7	10.44776119	0	0	NA	0	0	NA	3.486636081	3	0	0.513363919	4	0	0.486636081	unphased	0.829369297	0.829369297	1	0.00625	0.99375	0	0	2	5.23E-08	1	1	1	NA	NA	NA	NA
1351289	1206784960	PD9774b	8	94629242	G	T	AC011118.2	ENST00000501400	r.?	-	-	intronic	40	0	0	63	9	14.28571429	0	0	NA	0	0	NA	3.486636081	3	0	0.513363919	4	0	0.486636081	unphased	1.134035569	1.134035569	1	0	0.99875	0.00125	0	2	3.62E-11	1	1	1	NA	NA	NA	NA
1351289	1206785283	PD9774b	8	96943863	C	T	-	-	-	-	-	-	36	0	0	90	7	7.777777778	0	0	NA	0	0	NA	4.520177791	4	0	0.479822209	5	0	0.520177791	unphased	0.697805943	0.697805943	1	0.00125	0.99875	0	0	2	4.06E-07	1	1	1	NA	NA	NA	NA
1351289	1206785381	PD9774b	8	97760536	G	T	ENSG00000104324	CCDS6273.1	r.?	-	-	intronic	40	0	0	91	5	5.494505495	0	0	NA	0	0	NA	4.520177791	4	0	0.479822209	5	0	0.520177791	unphased	0.492955533	0.947667396	0.520177791	0.00125	0.995	0.00375	0	2	0.000101674	1	1	1	NA	NA	NA	NA
1351289	1206785538	PD9774b	8	99093564	G	T	C8orf47	CCDS34929.1	r.?	-	-	intronic	31	0	0	55	6	10.90909091	0	0	NA	0	0	NA	4.520177791	4	0	0.479822209	5	0	0.520177791	unphased	0.978740803	0.978740803	1	0	1	0	0	2	3.67E-07	1	1	1	NA	NA	NA	NA
1351289	1206785576	PD9774b	8	99361056	C	T	-	-	-	-	-	-	28	0	0	97	9	9.278350515	0	0	NA	0	0	NA	4.520177791	4	0	0.479822209	5	0	0.520177791	unphased	0.832434188	0.832434188	1	0.00125	0.99875	0	0	2	1.88E-09	1	1	1	NA	NA	NA	NA
1351289	1206785591	PD9774b	8	99456617	C	T	-	-	-	-	-	-	28	0	0	85	18	21.17647059	0	0	NA	0	0	NA	4.520177791	4	0	0.479822209	5	0	0.520177791	unphased	1.899908618	0.949954309	2	0	1	0	0	2	3.35E-24	1	1	1	NA	NA	NA	NA
1351289	1206785686	PD9774b	8	100192753	G	T	VPS13B	CCDS6280.1	r.?	-	-	intronic	30	0	0	77	5	6.493506494	0	0	NA	0	0	NA	4.520177791	4	0	0.479822209	5	0	0.520177791	unphased	0.582583811	1.119970559	0.520177791	0	0.99875	0.00125	0	2	4.58E-05	1	1	1	NA	NA	NA	NA
1351289	1206786199	PD9774b	8	104871516	G	T	RIMS2	ENST00000507740	r.?	-	-	intronic	27	0	0	66	6	9.090909091	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	0.677419355	0.677419355	1	0.00625	0.99375	0	0	2	1.10E-06	1	1	1	NA	NA	NA	NA
1351289	1206786327	PD9774b	8	106245658	C	T	-	-	-	-	-	-	32	0	0	68	7	10.29411765	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	0.767077799	0.767077799	1	0.0025	0.9975	0	0	2	5.80E-08	1	1	1	NA	NA	NA	NA
1351289	1206786330	PD9774b	8	106342500	A	T	ZFPM2	CCDS47908.1	r.?	-	-	intronic	39	0	0	69	8	11.5942029	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	0.863955119	0.863955119	1	0	1	0	0	2	2.49E-09	1	1	1	NA	NA	NA	NA
1351289	1206786356	PD9774b	8	106612354	G	T	ZFPM2	CCDS47908.1	r.?	-	-	intronic	46	0	0	67	8	11.94029851	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	0.889744824	0.889744824	1	0.00375	0.99625	0	0	2	1.96E-09	1	1	1	NA	NA	NA	NA
1351289	1206786383	PD9774b	8	106834783	C	T	-	-	-	-	-	-	36	0	0	74	11	14.86486486	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	1.107672188	1.107672188	1	0	1	0	0	2	1.53E-13	1	1	1	NA	NA	NA	NA
1351289	1206786404	PD9774b	8	107074039	G	T	-	-	-	-	-	-	44	0	0	76	14	18.42105263	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	1.372665535	1.372665535	1	0	0.99625	0.00375	0	2	3.14E-18	1	1	1	NA	NA	NA	NA
1351289	1206786405	PD9774b	8	107083113	C	T	-	-	-	-	-	-	40	0	0	67	5	7.462686567	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	0.556090515	0.556090515	1	0.005	0.995	0	0	2	2.33E-05	1	1	1	NA	NA	NA	NA
1351289	1206786548	PD9774b	8	108299777	C	T	ANGPT1	CCDS6306.1	r.?	-	-	intronic	37	0	0	70	7	10	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	0.74516129	0.74516129	1	0.005	0.995	0	0	2	7.11E-08	1	1	1	NA	NA	NA	NA
1351289	1206786573	PD9774b	8	108444878	C	T	ANGPT1	CCDS6306.1	r.?	-	-	intronic	16	0	0	44	8	18.18181818	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	1.35483871	1.35483871	1	0	0.9975	0.0025	0	2	5.90E-11	1	1	1	NA	NA	NA	NA
1351289	1206786740	PD9774b	8	110277711	A	T	NUDCD1	CCDS6312.1	r.?	-	-	intronic	32	0	0	60	9	15	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	1.117741935	1.117741935	1	0	1	0	0	2	2.29E-11	1	1	1	NA	NA	NA	NA
1351289	1206786923	PD9774b	8	112884259	A	T	-	-	-	-	-	-	37	0	0	57	17	29.8245614	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	2.222410866	1.111205433	2	0	1	0	0	2	8.82E-26	1	1	1	NA	NA	NA	NA
1351289	1206786942	PD9774b	8	113175051	C	T	-	-	-	-	-	-	39	0	0	48	6	12.5	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	0.931451613	0.931451613	1	0.00125	0.9975	0.00125	0	2	1.60E-07	1	1	1	NA	NA	NA	NA
1351289	1206786951	PD9774b	8	113261777	A	T	CSMD3	CCDS6315.1	r.?	-	-	intronic	30	0	0	70	9	12.85714286	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	0.958064516	0.958064516	1	0.0025	0.9975	0	0	2	9.65E-11	1	1	1	NA	NA	NA	NA
1351289	1206787016	PD9774b	8	113816953	G	T	CSMD3	CCDS6315.1	r.?	-	-	intronic	32	0	0	81	7	8.641975309	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	0.643966547	0.643966547	1	0	1	0	0	2	1.97E-07	1	1	1	NA	NA	NA	NA
1351289	1206787047	PD9774b	8	114103573	G	T	CSMD3	CCDS6315.1	r.?	-	-	intronic	31	0	0	67	6	8.955223881	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	0.667308618	0.667308618	1	0.0025	0.9975	0	0	2	1.20E-06	1	1	1	NA	NA	NA	NA
1351289	1206787229	PD9774b	8	116016052	G	T	-	-	-	-	-	-	29	0	0	65	11	16.92307692	189	0	0	379	27	7.124010554	3	3	0	1	NA	NA	NA	unphased	1.261042184	1.261042184	1	0	0.9975	0.0025	0	2	3.41E-14	1	2.03E-22	1	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206787343	PD9774b	8	117108565	A	T	AF130342.1	ENST00000505156	r.?	-	-	intronic	38	0	0	71	10	14.08450704	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	1.049522944	1.049522944	1	0.00125	0.99875	0	0	2	3.42E-12	1	1	1	NA	NA	NA	NA
1351289	1206787427	PD9774b	8	117771871	G	T	EIF3H	CCDS6319.1	r.?	-	-	upstream	42	0	0	74	19	25.67567568	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	1.913251962	0.956625981	2	0	1	0	0	2	3.14E-27	1	1	1	NA	NA	NA	NA
1351289	1206787568	PD9774b	8	119362249	C	T	SAMD12	CCDS47913.1	r.?	-	-	intronic	31	0	0	59	10	16.94915254	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	1.262985238	1.262985238	1	0	0.9975	0.0025	0	2	4.91E-13	1	1	1	NA	NA	NA	NA
1351289	1206787574	PD9774b	8	119455447	A	T	SAMD12	CCDS47913.1	r.?	-	-	intronic	43	0	0	61	8	13.1147541	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	0.977260709	0.977260709	1	0	0.99875	0.00125	0	2	9.09E-10	1	1	1	NA	NA	NA	NA
1351289	1206787618	PD9774b	8	120039194	G	T	-	-	-	-	-	-	37	0	0	55	6	10.90909091	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	0.812903226	0.812903226	1	0.005	0.995	0	0	2	3.67E-07	1	1	1	NA	NA	NA	NA
1351289	1206787761	PD9774b	8	121344395	G	T	COL14A1	CCDS34938.1	r.4945g>u	c.4675G>T	p.D1559Y	missense	42	0	0	59	9	15.25423729	266	0	0	268	36	13.43283582	3	3	0	1	NA	NA	NA	unphased	1.136686714	1.136686714	1	0	1	0	0	2	1.96E-11	1	2.79E-39	1	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206787832	PD9774b	8	122241730	C	T	-	-	-	-	-	-	42	0	0	76	6	7.894736842	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	0.588285229	0.588285229	1	0.0075	0.9925	0	0	2	2.53E-06	1	1	1	NA	NA	NA	NA
1351289	1206787835	PD9774b	8	122305372	C	T	-	-	-	-	-	-	25	0	0	48	5	10.41666667	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	0.776209677	0.776209677	1	0.005	0.995	0	0	2	4.47E-06	1	1	1	NA	NA	NA	NA
1351289	1206787910	PD9774b	8	123189597	G	T	-	-	-	-	-	-	33	0	0	53	12	22.64150943	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	1.687157638	0.843578819	2	0	1	0	0	2	5.39E-17	1	1	1	NA	NA	NA	NA
1351289	1206788116	PD9774b	8	125236585	C	T	ENSG00000214803	ENST00000399016	r.?	-	-	intronic	33	0	0	72	32	44.44444444	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	3.311827957	1.103942652	3	0	0.99875	0.00125	0	2	5.47E-54	1	1	1	NA	NA	NA	NA
1351289	1206788266	PD9774b	8	126776668	A	T	-	-	-	-	-	-	41	0	0	68	8	11.76470588	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	0.876660342	0.876660342	1	0	1	0	0	2	2.21E-09	1	1	1	NA	NA	NA	NA
1351289	1206788468	PD9774b	8	129055108	C	T	PVT1	CCDS3617.1	r.?	-	-	intronic	37	0	0	73	6	8.219178082	0	0	NA	1	0	0	3	3	0	1	NA	NA	NA	unphased	0.612461335	0.612461335	1	0.00625	0.99375	0	0	2	2.00E-06	1	1	1	NA	NA	NA	NA
1351289	1206788512	PD9774b	8	129599527	A	T	-	-	-	-	-	-	28	0	0	59	6	10.16949153	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	0.757791143	0.757791143	1	0.00125	0.9975	0.00125	0	2	5.61E-07	1	1	1	NA	NA	NA	NA
1351289	1206788519	PD9774b	8	129632953	G	T	-	-	-	-	-	-	29	0	0	61	6	9.836065574	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	0.732945531	0.732945531	1	0.00375	0.99625	0	0	2	6.85E-07	1	1	1	NA	NA	NA	NA
1351289	1206788690	PD9774b	8	131547740	G	T	-	-	-	-	-	-	35	0	0	66	9	13.63636364	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	1.016129032	1.016129032	1	0	1	0	0	2	5.59E-11	1	1	1	NA	NA	NA	NA
1351289	1206788713	PD9774b	8	131741431	G	T	-	-	-	-	-	-	35	0	0	87	12	13.79310345	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	1.027808676	1.027808676	1	0.00125	0.99875	0	0	2	3.06E-14	1	1	1	NA	NA	NA	NA
1351289	1206788714	PD9774b	8	131782862	G	T	-	-	-	-	-	-	28	0	0	76	16	21.05263158	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	1.568760611	0.784380306	2	0.00125	0.99875	0	0	2	1.25E-21	1	1	1	NA	NA	NA	NA
1351289	1206789131	PD9774b	8	135920051	G	T	-	-	-	-	-	-	42	0	0	75	5	6.666666667	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	0.496774194	0.496774194	1	0.01125	0.98875	0	0	2	4.03E-05	1	1	1	NA	NA	NA	NA
1351289	1206789182	PD9774b	8	136479430	A	T	KHDRBS3	CCDS6374.1	r.?	-	-	intronic	37	0	0	75	5	6.666666667	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	0.496774194	0.496774194	1	0.0125	0.9875	0	0	2	4.03E-05	1	1	1	NA	NA	NA	NA
1351289	1206789277	PD9774b	8	137516454	C	T	-	-	-	-	-	-	36	1	2.777777778	67	15	22.3880597	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	1.668271545	0.834135773	2	0.00125	0.99875	0	0	2	8.27E-21	0.165106833	1	1	NA	NA	NA	NA
1351289	1206789318	PD9774b	8	137951872	A	T	-	-	-	-	-	-	50	0	0	77	13	16.88311688	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	1.258064516	1.258064516	1	0.00125	0.995	0.00375	0	2	1.67E-16	1	1	1	NA	NA	NA	NA
1351289	1206789343	PD9774b	8	138135122	C	T	-	-	-	-	-	-	30	0	0	56	27	48.21428571	2	0	0	0	0	NA	3	3	0	1	NA	NA	NA	unphased	3.592741935	1.197580645	3	0	1	0	0	2	4.78E-47	1	1	1	NA	NA	NA	NA
1351289	1206789366	PD9774b	8	138238130	C	T	-	-	-	-	-	-	31	0	0	60	12	20	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	1.490322581	1.490322581	1	0	0.9925	0.0075	0	2	2.74E-16	1	1	1	NA	NA	NA	NA
1351289	1206789420	PD9774b	8	138542629	G	T	-	-	-	-	-	-	43	0	0	69	12	17.39130435	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	1.295932679	1.295932679	1	0.00125	0.99625	0.0025	0	2	1.65E-15	1	1	1	NA	NA	NA	NA
1351289	1206789421	PD9774b	8	138552348	C	T	-	-	-	-	-	-	37	0	0	69	9	13.04347826	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	0.971949509	0.971949509	1	0	1	0	0	2	8.45E-11	1	1	1	NA	NA	NA	NA
1351289	1206789440	PD9774b	8	138647753	A	T	-	-	-	-	-	-	32	0	0	68	11	16.17647059	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	1.20540797	1.20540797	1	0	0.99875	0.00125	0	2	5.76E-14	1	1	1	NA	NA	NA	NA
1351289	1206789510	PD9774b	8	139019362	G	T	-	-	-	-	-	-	34	0	0	73	6	8.219178082	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	0.612461335	0.612461335	1	0.005	0.995	0	0	2	2.00E-06	1	1	1	NA	NA	NA	NA
1351289	1206789684	PD9774b	8	140301185	A	T	-	-	-	-	-	-	38	0	0	79	14	17.72151899	0	0	NA	0	0	NA	3	3	0	1	NA	NA	NA	unphased	1.320538996	1.320538996	1	0	0.995	0.005	0	2	5.60E-18	1	1	1	NA	NA	NA	NA
1351289	1206789792	PD9774b	8	141274106	C	T	TRAPPC9	CCDS34946.1	r.?	-	-	intronic	40	0	0	67	6	8.955223881	0	0	NA	0	0	NA	4	4	0	1	NA	NA	NA	unphased	0.756860857	0.756860857	1	0	1	0	0	2	1.20E-06	1	1	1	NA	NA	NA	NA
1351289	1206790208	PD9774b	8	143988407	G	T	CYP11B2	CCDS6393.1	r.?	-	-	downstream	33	0	0	86	15	17.44186047	0	0	NA	0	0	NA	4	4	0	1	NA	NA	NA	unphased	1.47411853	1.47411853	1	0	0.98625	0.01375	0	2	4.76E-19	1	1	1	NA	NA	NA	NA
1351289	1206790570	PD9774b	8	146089588	A	T	ZNF250	ENST00000342660	r.?	-	-	downstream	30	0	0	60	4	6.666666667	0	0	NA	0	0	NA	4	4	0	1	NA	NA	NA	unphased	0.56344086	0.56344086	1	0.00375	0.995	0.00125	0	2	0.000243755	1	1	1	NA	NA	NA	NA
1351289	1206790975	PD9774b	9	3747592	C	T	-	-	-	-	-	-	26	0	0	60	19	31.66666667	0	0	NA	0	0	NA	1.641928061	1	0	0.358071939	2	0	0.641928061	unphased	1.929621305	1.175216717	1.641928061	0	0.99875	0.00125	0	2	3.21E-29	1	1	1	NA	NA	NA	NA
1351289	1206790986	PD9774b	9	3838514	G	T	GLIS3	CCDS6451.1	r.?	-	-	intronic	43	0	0	62	17	27.41935484	0	0	NA	0	0	NA	1.641928061	1	0	0.358071939	2	0	0.641928061	unphased	1.670809619	1.017590026	1.641928061	0	1	0	0	2	4.56E-25	1	1	1	NA	NA	NA	NA
1351289	1206791310	PD9774b	9	7660444	G	T	-	-	-	-	-	-	33	0	0	60	4	6.666666667	0	0	NA	0	0	NA	4	2	2	1	NA	NA	NA	unphased	0.56344086	0.56344086	1	0.00875	0.99	0.00125	0	2	0.000243755	1	1	1	NA	NA	NA	NA
1351289	1206791428	PD9774b	9	8970198	C	T	PTPRD	CCDS43786.1	r.?	-	-	intronic	43	0	0	82	5	6.097560976	0	0	NA	0	0	NA	4	2	2	1	NA	NA	NA	unphased	0.51534225	0.51534225	1	0.00875	0.99125	0	0	2	6.19E-05	1	1	1	NA	NA	NA	NA
1351289	1206791509	PD9774b	9	9749639	A	T	PTPRD	CCDS43786.1	r.?	-	-	intronic	40	0	0	83	8	9.638554217	0	0	NA	0	0	NA	4	2	2	1	NA	NA	NA	unphased	0.814613292	0.814613292	1	0	1	0	0	2	1.10E-08	1	1	1	NA	NA	NA	NA
1351289	1206791556	PD9774b	9	10194171	C	T	PTPRD	CCDS43786.1	r.?	-	-	intronic	25	0	0	60	7	11.66666667	0	0	NA	0	0	NA	4	2	2	1	NA	NA	NA	unphased	0.986021505	0.986021505	1	0.0025	0.9975	0	0	2	2.39E-08	1	1	1	NA	NA	NA	NA
1351289	1206791595	PD9774b	9	10544599	A	T	PTPRD	CCDS43786.1	r.?	-	-	intronic	39	0	0	62	14	22.58064516	0	0	NA	0	0	NA	4	2	2	1	NA	NA	NA	unphased	1.90842872	0.95421436	2	0	1	0	0	2	1.42E-19	1	1	1	NA	NA	NA	NA
1351289	1206791858	PD9774b	9	12559556	C	T	-	-	-	-	-	-	19	0	0	33	12	36.36363636	0	0	NA	0	0	NA	4	2	2	1	NA	NA	NA	unphased	3.073313783	1.536656891	2	0.00125	0.98125	0.0175	0	2	7.86E-20	1	1	1	NA	NA	NA	NA
1351289	1206791862	PD9774b	9	12621258	A	T	-	-	-	-	-	-	41	0	0	57	8	14.03508772	0	0	NA	0	0	NA	4	2	2	1	NA	NA	NA	unphased	1.186191285	1.186191285	1	0	0.99875	0.00125	0	2	5.19E-10	1	1	1	NA	NA	NA	NA
1351289	1206792217	PD9774b	9	15625214	G	T	C9orf93	CCDS6481.1	r.?	-	-	intronic	29	0	0	57	9	15.78947368	0	0	NA	1	1	100	4	2	2	1	NA	NA	NA	unphased	1.334465195	1.334465195	1	0	0.99375	0.00625	0	2	1.42E-11	1	0.005	1	NA	NA	NA	NA
1351289	1206792252	PD9774b	9	15976139	C	T	C9orf93	CCDS6481.1	r.?	-	-	downstream	29	0	0	67	8	11.94029851	0	0	NA	0	0	NA	4	2	2	1	NA	NA	NA	unphased	1.009147809	1.009147809	1	0	0.99875	0.00125	0	2	1.96E-09	1	1	1	NA	NA	NA	NA
1351289	1206792383	PD9774b	9	17141145	G	T	CNTLN	CCDS43789.1	r.?	-	-	intronic	33	0	0	58	7	12.06896552	0	0	NA	0	0	NA	2.748462482	1	1	0.251537518	2	1	0.748462482	unphased	0.868974615	0.868974615	1	0.0025	0.9975	0	0	2	1.88E-08	1	1	1	NA	NA	NA	NA
1351289	1206792423	PD9774b	9	17586698	C	T	SH3GL2	CCDS6483.1	r.?	-	-	intronic	27	0	0	63	14	22.22222222	0	0	NA	0	0	NA	2.748462482	1	1	0.251537518	2	1	0.748462482	unphased	1.600016752	0.915099277	1.748462482	0	1	0	0	2	1.81E-19	1	1	1	NA	NA	NA	NA
1351289	1206792460	PD9774b	9	18023237	C	T	-	-	-	-	-	-	29	0	0	55	19	34.54545455	0	0	NA	0	0	NA	2.748462482	1	1	0.251537518	2	1	0.748462482	unphased	2.487298769	1.422563421	1.748462482	0	0.9825	0.0175	0	2	4.51E-30	1	1	1	NA	NA	NA	NA
1351289	1206792521	PD9774b	9	18910638	G	T	ADAMTSL1	CCDS47954.1	r.7508g>u	c.?	p.?	3'UTR variant	25	0	0	69	6	8.695652174	0	0	NA	0	0	NA	2.748462482	1	1	0.251537518	2	1	0.748462482	unphased	0.626093512	0.836506207	0.748462482	0.0025	0.9975	0	0	2	1.43E-06	1	1	1	NA	NA	NA	NA
1351289	1206792525	PD9774b	9	18971171	G	T	FAM154A	CCDS6487.1	r.?	-	-	intronic	44	0	0	65	4	6.153846154	0	0	NA	0	0	NA	2.748462482	1	1	0.251537518	2	1	0.748462482	unphased	0.443081562	0.591989008	0.748462482	0.005	0.995	0	0	2	0.000331785	1	1	1	NA	NA	NA	NA
1351289	1206792690	PD9774b	9	20544997	G	T	MLLT3	CCDS6494.1	r.?	-	-	intronic	28	0	0	60	13	21.66666667	0	0	NA	0	0	NA	2.748462482	1	1	0.251537518	2	1	0.748462482	unphased	1.560016333	1.560016333	1	0	0.985	0.015	0	2	5.07E-18	1	1	1	NA	NA	NA	NA
1351289	1206792873	PD9774b	9	22406194	G	T	-	-	-	-	-	-	27	0	0	62	13	20.96774194	0	0	NA	0	0	NA	2.748462482	1	1	0.251537518	2	1	0.748462482	unphased	1.509693226	1.509693226	1	0	0.98875	0.01125	0	2	8.08E-18	1	1	1	NA	NA	NA	NA
1351289	1206792897	PD9774b	9	22618070	G	T	-	-	-	-	-	-	35	0	0	63	13	20.63492063	0	0	NA	0	0	NA	2.748462482	1	1	0.251537518	2	1	0.748462482	unphased	1.485729841	1.485729841	1	0	0.99875	0.00125	0	2	1.01E-17	1	1	1	NA	NA	NA	NA
1351289	1206792963	PD9774b	9	23347608	A	T	-	-	-	-	-	-	44	0	0	71	4	5.633802817	0	0	NA	0	0	NA	2.748462482	1	1	0.251537518	2	1	0.748462482	unphased	0.40563805	0.541961768	0.748462482	0.00375	0.99625	0	0	2	0.000464961	1	1	1	NA	NA	NA	NA
1351289	1206792967	PD9774b	9	23382026	C	T	-	-	-	-	-	-	32	0	0	64	11	17.1875	0	0	NA	0	0	NA	2.748462482	1	1	0.251537518	2	1	0.748462482	unphased	1.237512957	1.237512957	1	0	0.99875	0.00125	0	2	2.85E-14	1	1	1	NA	NA	NA	NA
1351289	1206792986	PD9774b	9	23830782	A	T	ELAVL2	CCDS6515.1	r.?	-	-	upstream	31	0	0	67	20	29.85074627	0	0	NA	0	0	NA	2.748462482	1	1	0.251537518	2	1	0.748462482	unphased	2.149276234	1.229237834	1.748462482	0	0.9975	0.0025	0	2	4.42E-30	1	1	1	NA	NA	NA	NA
1351289	1206793014	PD9774b	9	24396055	C	T	-	-	-	-	-	-	32	0	0	72	12	16.66666667	0	0	NA	0	0	NA	2.748462482	1	1	0.251537518	2	1	0.748462482	unphased	1.200012564	1.200012564	1	0	0.9975	0.0025	0	2	2.84E-15	1	1	1	NA	NA	NA	NA
1351289	1206793174	PD9774b	9	26581992	C	T	-	-	-	-	-	-	42	0	0	59	5	8.474576271	0	0	NA	0	0	NA	2.748462482	1	1	0.251537518	2	1	0.748462482	unphased	0.61017588	0.8152391	0.748462482	0.00375	0.99625	0	0	2	1.25E-05	1	1	1	NA	NA	NA	NA
1351289	1206793432	PD9774b	9	29217691	G	T	-	-	-	-	-	-	51	0	0	67	8	11.94029851	0	0	NA	0	0	NA	2.748462482	1	1	0.251537518	2	1	0.748462482	unphased	0.859710494	0.859710494	1	0.00375	0.995	0.00125	0	2	1.96E-09	1	1	1	NA	NA	NA	NA
1351289	1206793484	PD9774b	9	29585158	A	T	-	-	-	-	-	-	35	0	0	70	15	21.42857143	0	0	NA	0	0	NA	2.748462482	1	1	0.251537518	2	1	0.748462482	unphased	1.542873297	0.88241716	1.748462482	0.00375	0.99625	0	0	2	1.70E-20	1	1	1	NA	NA	NA	NA
1351289	1206793538	PD9774b	9	30075603	C	T	-	-	-	-	-	-	34	0	0	61	9	14.75409836	0	0	NA	0	0	NA	2.748462482	1	1	0.251537518	2	1	0.748462482	unphased	1.062306204	1.062306204	1	0	0.9975	0.0025	0	2	2.68E-11	1	1	1	NA	NA	NA	NA
1351289	1206793579	PD9774b	9	30569496	A	T	-	-	-	-	-	-	31	0	0	54	6	11.11111111	0	0	NA	0	0	NA	2.748462482	1	1	0.251537518	2	1	0.748462482	unphased	0.800008376	1.068869042	0.748462482	0	1	0	0	2	3.29E-07	1	1	1	NA	NA	NA	NA
1351289	1206793621	PD9774b	9	31055895	C	T	-	-	-	-	-	-	37	0	0	61	5	8.196721311	0	0	NA	0	0	NA	2.748462482	1	1	0.251537518	2	1	0.748462482	unphased	0.590170114	0.788509949	0.748462482	0.00625	0.99375	0	0	2	1.47E-05	1	1	1	NA	NA	NA	NA
1351289	1206793624	PD9774b	9	31081950	A	T	-	-	-	-	-	-	47	0	0	73	10	13.69863014	0	0	NA	0	0	NA	2.748462482	1	1	0.251537518	2	1	0.748462482	unphased	0.986311697	0.986311697	1	0.0025	0.9975	0	0	2	4.56E-12	1	1	1	NA	NA	NA	NA
1351289	1206794119	PD9774b	9	34945851	A	T	-	-	-	-	-	-	33	0	0	80	9	11.25	0	0	NA	0	0	NA	2.748462482	1	1	0.251537518	2	1	0.748462482	unphased	0.810008481	1.082229905	0.748462482	0.00125	0.99625	0.0025	0	2	3.29E-10	1	1	1	NA	NA	NA	NA
1351289	1206803232	PD9774b	9	71554942	G	T	PIP5K1B	CCDS6624.1	r.?	-	-	intronic	31	0	0	45	9	20	0	0	NA	0	0	NA	0.778367287	0	0	0.221632713	1	0	0.778367287	unphased	1.045996038	1.045996038	1	0	1	0	0	2	1.47E-12	1	1	1	NA	NA	NA	NA
1351289	1206803345	PD9774b	9	72612939	A	T	-	-	-	-	-	-	34	0	0	52	8	15.38461538	0	0	NA	0	0	NA	0.778367287	0	0	0.221632713	1	0	0.778367287	unphased	0.804612337	1.03371808	0.778367287	0	1	0	0	2	2.42E-10	1	1	1	NA	NA	NA	NA
1351289	1206803777	PD9774b	9	76672284	C	T	-	-	-	-	-	-	29	0	0	39	5	12.82051282	0	0	NA	0	0	NA	0.778367287	0	0	0.221632713	1	0	0.778367287	unphased	0.670510281	0.861431733	0.778367287	0.0025	0.9975	0	0	2	1.56E-06	1	1	1	NA	NA	NA	NA
1351289	1206803917	PD9774b	9	78769579	G	T	PCSK5	CCDS6652.1	r.?	-	-	intronic	31	0	0	69	8	11.5942029	0	0	NA	0	0	NA	0.778367287	0	0	0.221632713	1	0	0.778367287	unphased	0.606374515	0.779033915	0.778367287	0.00375	0.99625	0	0	2	2.49E-09	1	1	1	NA	NA	NA	NA
1351289	1206804037	PD9774b	9	80254911	A	T	GNA14	CCDS6657.1	r.?	-	-	intronic	35	0	0	63	8	12.6984127	0	0	NA	0	0	NA	0.778367287	0	0	0.221632713	1	0	0.778367287	unphased	0.664124469	0.853227621	0.778367287	0.0025	0.9975	0	0	2	1.18E-09	1	1	1	NA	NA	NA	NA
1351289	1206804121	PD9774b	9	81661730	C	T	-	-	-	-	-	-	32	0	0	61	5	8.196721311	0	0	NA	0	0	NA	0.778367287	0	0	0.221632713	1	0	0.778367287	unphased	0.428686901	0.550751436	0.778367287	0.00625	0.99375	0	0	2	1.47E-05	1	1	1	NA	NA	NA	NA
1351289	1206804252	PD9774b	9	83303670	A	T	-	-	-	-	-	-	38	0	0	49	4	8.163265306	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.526662278	0.526662278	1	0.00125	0.99875	0	0	2	0.000110643	1	1	1	NA	NA	NA	NA
1351289	1206804298	PD9774b	9	83708114	G	T	-	-	-	-	-	-	30	0	0	74	6	8.108108108	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.523103749	0.523103749	1	0.01125	0.98875	0	0	2	2.16E-06	1	1	1	NA	NA	NA	NA
1351289	1206804369	PD9774b	9	84823117	A	T	-	-	-	-	-	-	34	0	0	67	7	10.44776119	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.674049109	0.674049109	1	0.0025	0.9975	0	0	2	5.23E-08	1	1	1	NA	NA	NA	NA
1351289	1206804378	PD9774b	9	84969410	C	T	-	-	-	-	-	-	32	0	0	64	11	17.1875	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.108870968	1.108870968	1	0	0.99875	0.00125	0	2	2.85E-14	1	1	1	NA	NA	NA	NA
1351289	1206804517	PD9774b	9	86978226	G	T	-	-	-	-	-	-	31	0	0	50	6	12	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.774193548	0.774193548	1	0.00125	0.99875	0	0	2	2.06E-07	1	1	1	NA	NA	NA	NA
1351289	1206804555	PD9774b	9	87705958	C	T	-	-	-	-	-	-	27	0	0	40	7	17.5	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.129032258	1.129032258	1	0	0.99875	0.00125	0	2	1.26E-09	1	1	1	NA	NA	NA	NA
1351289	1206804567	PD9774b	9	87845622	G	T	-	-	-	-	-	-	24	0	0	44	6	13.63636364	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.879765396	0.879765396	1	0.00125	0.99875	0	0	2	9.37E-08	1	1	1	NA	NA	NA	NA
1351289	1206804901	PD9774b	9	91548948	C	T	-	-	-	-	-	-	32	0	0	50	6	12	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.774193548	0.774193548	1	0	1	0	0	2	2.06E-07	1	1	1	NA	NA	NA	NA
1351289	1206804945	PD9774b	9	92306882	C	T	-	-	-	-	-	-	36	0	0	45	11	24.44444444	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.577060932	1.577060932	1	0.00125	0.9875	0.01125	0	2	4.24E-16	1	1	1	NA	NA	NA	NA
1351289	1206805184	PD9774b	9	95123807	G	T	CENPP	CCDS35063.1	r.?	-	-	intronic	24	0	0	38	8	21.05263158	0	0	NA	0	0	NA	2.412438486	1	1	0.587561514	2	1	0.412438486	unphased	1.44506345	1.44506345	1	0	0.99375	0.00625	0	2	1.67E-11	1	1	1	NA	NA	NA	NA
1351289	1206805233	PD9774b	9	95562381	C	T	-	-	-	-	-	-	31	0	0	54	11	20.37037037	0	0	NA	1	0	0	2.412438486	1	1	0.587561514	2	1	0.412438486	unphased	1.39823269	1.39823269	1	0	0.995	0.005	0	2	3.84E-15	1	1	1	NA	NA	NA	NA
1351289	1206805392	PD9774b	9	96961928	C	T	-	-	-	-	-	-	41	0	0	43	9	20.93023256	0	0	NA	0	0	NA	2.412438486	1	1	0.587561514	2	1	0.412438486	unphased	1.436661919	1.436661919	1	0	0.995	0.005	0	2	9.45E-13	1	1	1	NA	NA	NA	NA
1351289	1206805847	PD9774b	9	102447492	A	T	-	-	-	-	-	-	36	0	0	58	7	12.06896552	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.778642937	0.778642937	1	0	1	0	0	2	1.88E-08	1	1	1	NA	NA	NA	NA
1351289	1206805879	PD9774b	9	103000357	C	T	INVS	CCDS6746.1	r.?	-	-	intronic	31	0	0	54	10	18.51851852	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.19474313	1.19474313	1	0	0.99875	0.00125	0	2	1.91E-13	1	1	1	NA	NA	NA	NA
1351289	1206805896	PD9774b	9	103142385	C	T	AL353805.1	ENST00000429562	r.?	-	-	intronic	29	0	0	45	6	13.33333333	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.860215054	0.860215054	1	0.00125	0.99875	0	0	2	1.08E-07	1	1	1	NA	NA	NA	NA
1351289	1206805925	PD9774b	9	103417490	C	T	-	-	-	-	-	-	33	0	0	59	12	20.33898305	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.312192455	1.312192455	1	0	0.99875	0.00125	0	2	2.20E-16	1	1	1	NA	NA	NA	NA
1351289	1206805982	PD9774b	9	104432261	C	T	GRIN3A	CCDS6758.1	r.?	-	-	intronic	40	0	0	77	6	7.792207792	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.502723083	0.502723083	1	0.005	0.995	0	0	2	2.73E-06	1	1	1	NA	NA	NA	NA
1351289	1206806022	PD9774b	9	104947137	A	T	-	-	-	-	-	-	27	0	0	55	5	9.090909091	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.586510264	0.586510264	1	0.005	0.99375	0.00125	0	2	8.83E-06	1	1	1	NA	NA	NA	NA
1351289	1206806062	PD9774b	9	105469197	G	T	-	-	-	-	-	-	38	0	0	85	12	14.11764706	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.910815939	0.910815939	1	0.0025	0.9975	0	0	2	2.29E-14	1	1	1	NA	NA	NA	NA
1351289	1206806240	PD9774b	9	107592361	C	T	ABCA1	CCDS6762.1	r.?	-	-	intronic	26	0	0	46	6	13.04347826	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.841514727	0.841514727	1	0.00125	0.9975	0.00125	0	2	1.23E-07	1	1	1	NA	NA	NA	NA
1351289	1206806577	PD9774b	9	111821863	G	T	C9orf5	CCDS43858.1	r.?	-	-	intronic	31	0	0	41	5	12.19512195	0	0	NA	0	0	NA	1.288878388	1	0	0.711121612	2	0	0.288878388	unphased	0.700059914	0.700059914	1	0.005	0.99375	0.00125	0	2	2.02E-06	1	1	1	NA	NA	NA	NA
1351289	1206806949	PD9774b	9	115812986	A	T	ZFP37	CCDS6787.1	r.?	-	-	intronic	29	0	0	51	5	9.803921569	0	0	NA	0	0	NA	1.288878388	1	0	0.711121612	2	0	0.288878388	unphased	0.562793264	0.562793264	1	0.005	0.995	0	0	2	6.06E-06	1	1	1	NA	NA	NA	NA
1351289	1206807235	PD9774b	9	119318152	C	T	ASTN2	CCDS48009.1	r.?	-	-	intronic	20	0	0	44	5	11.36363636	0	0	NA	0	0	NA	1.288878388	1	0	0.711121612	2	0	0.288878388	unphased	0.652328556	0.652328556	1	0.005	0.995	0	0	2	2.88E-06	1	1	1	NA	NA	NA	NA
1351289	1206807273	PD9774b	9	119912164	C	T	ASTN2	CCDS48009.1	r.?	-	-	intronic	25	0	0	58	12	20.68965517	0	0	NA	0	0	NA	1.288878388	1	0	0.711121612	2	0	0.288878388	unphased	1.187687853	1.187687853	1	0.00125	0.99375	0.005	0	2	1.76E-16	1	1	1	NA	NA	NA	NA
1351289	1206807435	PD9774b	9	121775203	C	T	-	-	-	-	-	-	32	0	0	48	6	12.5	0	0	NA	0	0	NA	1.288878388	1	0	0.711121612	2	0	0.288878388	unphased	0.717561411	0.717561411	1	0	1	0	0	2	1.60E-07	1	1	1	NA	NA	NA	NA
1351289	1206807442	PD9774b	9	121855789	G	T	-	-	-	-	-	-	36	0	0	66	16	24.24242424	0	0	NA	0	0	NA	1.288878388	1	0	0.711121612	2	0	0.288878388	unphased	1.391634253	1.391634253	1	0	0.99625	0.00375	0	2	1.03E-22	1	1	1	NA	NA	NA	NA
1351289	1206807490	PD9774b	9	122485860	G	T	-	-	-	-	-	-	41	0	0	61	15	24.59016393	0	0	NA	0	0	NA	1.288878388	1	0	0.711121612	2	0	0.288878388	unphased	1.411596219	1.411596219	1	0	0.9925	0.0075	0	2	1.73E-21	1	1	1	NA	NA	NA	NA
1351289	1206807498	PD9774b	9	122537613	G	T	-	-	-	-	-	-	35	0	0	42	11	26.19047619	0	0	NA	0	0	NA	1.288878388	1	0	0.711121612	2	0	0.288878388	unphased	1.503462005	1.503462005	1	0	0.98875	0.01125	0	2	1.81E-16	1	1	1	NA	NA	NA	NA
1351289	1206807855	PD9774b	9	126949134	G	T	-	-	-	-	-	-	28	0	0	38	4	10.52631579	0	0	NA	0	0	NA	1.288878388	1	0	0.711121612	2	0	0.288878388	unphased	0.604262241	0.604262241	1	0	1	0	0	2	4.03E-05	1	1	1	NA	NA	NA	NA
1351289	1206807869	PD9774b	9	127019058	C	T	NEK6	CCDS48015.1	r.?	-	-	upstream	27	0	0	52	14	26.92307692	0	0	NA	0	0	NA	1.288878388	1	0	0.711121612	2	0	0.288878388	unphased	1.545516886	1.545516886	1	0	0.9875	0.0125	0	2	9.04E-21	1	1	1	NA	NA	NA	NA
1351289	1206808040	PD9774b	9	129159985	G	T	FAM125B	CCDS35142.1	r.?	-	-	intronic	37	0	0	49	13	26.53061224	0	0	NA	0	0	NA	1.288878388	1	0	0.711121612	2	0	0.288878388	unphased	1.522987486	1.522987486	1	0	0.9875	0.0125	0	2	2.71E-19	1	1	1	NA	NA	NA	NA
1351289	1206808098	PD9774b	9	129772727	C	T	RALGPS1	CCDS35143.1	r.?	-	-	intronic	30	0	0	44	8	18.18181818	0	0	NA	0	0	NA	1.288878388	1	0	0.711121612	2	0	0.288878388	unphased	1.043725689	1.043725689	1	0.00125	0.99875	0	0	2	5.90E-11	1	1	1	NA	NA	NA	NA
1351289	1206808520	PD9774b	9	133839352	C	T	-	-	-	-	-	-	28	0	0	45	9	20	0	0	NA	0	0	NA	1.288878388	1	0	0.711121612	2	0	0.288878388	unphased	1.148098258	1.148098258	1	0	0.99875	0.00125	0	2	1.47E-12	1	1	1	NA	NA	NA	NA
1351289	1206808904	PD9774b	9	137900492	A	T	-	-	-	-	-	-	29	0	0	44	4	9.090909091	0	0	NA	0	0	NA	1.288878388	1	0	0.711121612	2	0	0.288878388	unphased	0.521862845	0.521862845	1	0.005	0.995	0	0	2	7.23E-05	1	1	1	NA	NA	NA	NA
1351289	1206808910	PD9774b	9	138013644	C	T	OLFM1	CCDS6986.1	r.?	-	-	downstream	38	0	0	53	7	13.20754717	0	0	NA	0	0	NA	1.288878388	1	0	0.711121612	2	0	0.288878388	unphased	0.758178095	0.758178095	1	0	1	0	0	2	9.85E-09	1	1	1	NA	NA	NA	NA
1351289	1206808923	PD9774b	9	138246710	C	T	-	-	-	-	-	-	29	0	0	32	4	12.5	0	0	NA	0	0	NA	1.288878388	1	0	0.711121612	2	0	0.288878388	unphased	0.717561411	0.717561411	1	0.0025	0.99625	0.00125	0	2	2.01E-05	1	1	1	NA	NA	NA	NA
1351289	1206809200	PD9774b	9	140492222	G	T	-	-	-	-	-	-	22	0	0	25	4	16	0	0	NA	0	0	NA	1.288878388	1	0	0.711121612	2	0	0.288878388	unphased	0.918478607	0.918478607	1	0.00125	0.9975	0.00125	0	2	7.27E-06	1	1	1	NA	NA	NA	NA
1351289	1206809487	PD9774b	X	3286793	A	T	-	-	-	-	-	-	29	0	0	37	5	13.51351351	0	0	NA	0	0	NA	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	#N/A	1.19E-06	1	1	1	NA	NA	NA	NA
1351289	1206810083	PD9774b	X	9832083	G	T	SHROOM2	CCDS14135.1	r.?	-	-	intronic	29	0	0	49	9	18.36734694	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.001316656	1.001316656	1	0.00125	0.9975	0.00125	0	2	3.35E-12	1	1	1	NA	NA	NA	NA
1351289	1206810087	PD9774b	X	9946552	G	T	-	-	-	-	-	-	50	0	0	45	8	17.77777778	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.969175627	0.969175627	1	0	0.99875	0.00125	0	2	7.14E-11	1	1	1	NA	NA	NA	NA
1351289	1206810199	PD9774b	X	12289835	G	T	FRMPD4	CCDS35201.1	r.?	-	-	intronic	54	0	0	57	10	17.54385965	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	0.956423316	0.956423316	1	0.00125	0.9975	0.00125	0	2	3.40E-13	1	1	1	NA	NA	NA	NA
1351289	1206810316	PD9774b	X	13963276	A	T	-	-	-	-	-	-	31	0	0	40	8	20	0	0	NA	0	0	NA	1	1	0	1	NA	NA	NA	unphased	1.090322581	1.090322581	1	0.00125	0.99875	0	0	2	2.61E-11	1	1	1	NA	NA	NA	NA
1351289	1206810755	PD9774b	X	20620835	G	T	-	-	-	-	-	-	42	0	0	42	8	19.04761905	0	0	NA	0	0	NA	1.637835256	1	0	0.362164744	1	1	0.637835256	unphased	1.159894888	1.159894888	1	0	0.99625	0.00375	0	2	3.96E-11	1	1	1	NA	NA	NA	NA
1351289	1206810795	PD9774b	X	21078863	G	T	-	-	-	-	-	-	37	0	0	52	8	15.38461538	0	0	NA	0	0	NA	1.637835256	1	0	0.362164744	1	1	0.637835256	unphased	0.936838178	0.936838178	1	0.00125	0.99875	0	0	2	2.42E-10	1	1	1	NA	NA	NA	NA
1351289	1206810917	PD9774b	X	23273753	A	T	-	-	-	-	-	-	32	0	0	52	6	11.53846154	0	0	NA	0	0	NA	1.637835256	1	0	0.362164744	1	1	0.637835256	unphased	0.702628634	1.101583249	0.637835256	0	1	0	0	2	2.61E-07	1	1	1	NA	NA	NA	NA
1351289	1206811057	PD9774b	X	25171087	C	T	-	-	-	-	-	-	39	0	0	54	5	9.259259259	0	0	NA	0	0	NA	1.637835256	1	0	0.362164744	1	1	0.637835256	unphased	0.563837793	0.883986558	0.637835256	0.0025	0.99625	0.00125	0	2	8.06E-06	1	1	1	NA	NA	NA	NA
1351289	1206811146	PD9774b	X	26509104	G	T	-	-	-	-	-	-	34	0	0	52	6	11.53846154	0	0	NA	0	0	NA	1.637835256	1	0	0.362164744	1	1	0.637835256	unphased	0.702628634	1.101583249	0.637835256	0	1	0	0	2	2.61E-07	1	1	1	NA	NA	NA	NA
1351289	1206811247	PD9774b	X	28136045	G	T	-	-	-	-	-	-	36	0	0	50	6	12	0	0	NA	0	0	NA	1.637835256	1	0	0.362164744	1	1	0.637835256	unphased	0.730733779	1.145646579	0.637835256	0.00125	0.99875	0	0	2	2.06E-07	1	1	1	NA	NA	NA	NA
1351289	1206811393	PD9774b	X	30389712	G	T	-	-	-	-	-	-	31	0	0	56	8	14.28571429	0	0	NA	0	0	NA	1.637835256	1	0	0.362164744	1	1	0.637835256	unphased	0.869921166	0.869921166	1	0.00125	0.99875	0	0	2	4.48E-10	1	1	1	NA	NA	NA	NA
1351289	1206811627	PD9774b	X	33770103	C	T	-	-	-	-	-	-	31	0	0	47	5	10.63829787	0	0	NA	0	0	NA	1.415960809	1	0	0.584039191	1	1	0.415960809	unphased	0.624209969	0.624209969	1	0.005	0.995	0	0	2	4.02E-06	1	1	1	NA	NA	NA	NA
1351289	1206811703	PD9774b	X	35325241	A	T	-	-	-	-	-	-	35	0	0	40	4	10	0	0	NA	0	0	NA	1.415960809	1	0	0.584039191	1	1	0.415960809	unphased	0.586757371	1.410607343	0.415960809	0	0.995	0.005	0	2	4.95E-05	1	1	1	NA	NA	NA	NA
1351289	1206811770	PD9774b	X	36580027	A	T	-	-	-	-	-	-	42	0	0	52	4	7.692307692	0	0	NA	0	0	NA	1.415960809	1	0	0.584039191	1	1	0.415960809	unphased	0.451351824	1.085082571	0.415960809	0.0025	0.9975	0	0	2	0.000139698	1	1	1	NA	NA	NA	NA
1351289	1206811791	PD9774b	X	37365770	C	T	ENSG00000250349	ENST00000465127	r.?	-	-	intronic	24	0	0	30	4	13.33333333	0	0	NA	0	0	NA	1.415960809	1	0	0.584039191	1	1	0.415960809	unphased	0.782343162	0.782343162	1	0.005	0.99375	0.00125	0	2	1.54E-05	1	1	1	NA	NA	NA	NA
1351289	1206811825	PD9774b	X	38255731	A	T	OTC	CCDS14247.1	r.?	-	-	intronic	28	0	0	41	7	17.07317073	0	0	NA	0	0	NA	1.415960809	1	0	0.584039191	1	1	0.415960809	unphased	1.001780878	1.001780878	1	0	0.9975	0.0025	0	2	1.51E-09	1	1	1	NA	NA	NA	NA
1351289	1206812091	PD9774b	X	42278911	A	T	-	-	-	-	-	-	47	0	0	46	8	17.39130435	0	0	NA	0	0	NA	1.415960809	1	0	0.584039191	1	1	0.415960809	unphased	1.020447602	1.020447602	1	0.00125	0.9975	0.00125	0	2	8.61E-11	1	1	1	NA	NA	NA	NA
1351289	1206812162	PD9774b	X	43609294	G	T	MAOA	CCDS14260.1	r.?	-	-	downstream	45	0	0	53	8	15.09433962	0	0	NA	0	0	NA	1.415960809	1	0	0.584039191	1	1	0.415960809	unphased	0.885671504	0.885671504	1	0.0025	0.9975	0	0	2	2.83E-10	1	1	1	NA	NA	NA	NA
1351289	1206812252	PD9774b	X	45166852	G	T	-	-	-	-	-	-	43	0	0	67	12	17.91044776	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.155512759	1.155512759	1	0.00125	0.99875	0	0	2	1.14E-15	1	1	1	NA	NA	NA	NA
1351289	1206812264	PD9774b	X	45401496	G	T	-	-	-	-	-	-	31	0	0	44	8	18.18181818	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.173020528	1.173020528	1	0.0025	0.99625	0.00125	0	2	5.90E-11	1	1	1	NA	NA	NA	NA
1351289	1206812312	PD9774b	X	46210989	G	T	-	-	-	-	-	-	26	0	0	54	6	11.11111111	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.716845878	0.716845878	1	0.005	0.995	0	0	2	3.29E-07	1	1	1	NA	NA	NA	NA
1351289	1206812407	PD9774b	X	47181678	C	T	-	-	-	-	-	-	28	0	0	45	10	22.22222222	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.433691756	1.433691756	1	0	0.99375	0.00625	0	2	2.66E-14	1	1	1	NA	NA	NA	NA
1351289	1206812717	PD9774b	X	51022548	C	T	-	-	-	-	-	-	25	0	0	49	7	14.28571429	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.921658986	0.921658986	1	0	1	0	0	2	5.58E-09	1	1	1	NA	NA	NA	NA
1351289	1206812811	PD9774b	X	51979353	C	T	-	-	-	-	-	-	37	0	0	55	5	9.090909091	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.586510264	0.586510264	1	0.005	0.995	0	0	2	8.83E-06	1	1	1	NA	NA	NA	NA
1351289	1206812979	PD9774b	X	54622411	G	T	-	-	-	-	-	-	36	0	0	57	8	14.03508772	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.90548953	0.90548953	1	0	1	0	0	2	5.19E-10	1	1	1	NA	NA	NA	NA
1351289	1206813023	PD9774b	X	55190286	C	T	FAM104B	CCDS35305.1	r.?	-	-	upstream	34	0	0	58	10	17.24137931	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.112347052	1.112347052	1	0	1	0	0	2	4.10E-13	1	1	1	NA	NA	NA	NA
1351289	1206813030	PD9774b	X	55361221	C	T	-	-	-	-	-	-	39	0	0	51	7	13.7254902	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.885515497	0.885515497	1	0	0.99875	0.00125	0	2	7.46E-09	1	1	1	NA	NA	NA	NA
1351289	1206813039	PD9774b	X	55507682	A	T	-	-	-	-	-	-	39	0	0	54	6	11.11111111	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.716845878	0.716845878	1	0.0025	0.9975	0	0	2	3.29E-07	1	1	1	NA	NA	NA	NA
1351289	1206813047	PD9774b	X	55765002	C	T	RRAGB	CCDS14371.1	r.?	-	-	intronic	33	0	0	62	11	17.74193548	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.144640999	1.144640999	1	0	1	0	0	2	1.96E-14	1	1	1	NA	NA	NA	NA
1351289	1206813085	PD9774b	X	56240619	G	T	-	-	-	-	-	-	38	0	0	49	7	14.28571429	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.921658986	0.921658986	1	0.00125	0.99875	0	0	2	5.58E-09	1	1	1	NA	NA	NA	NA
1351289	1206813099	PD9774b	X	56382339	A	T	-	-	-	-	-	-	40	0	0	50	8	16	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.032258065	1.032258065	1	0.00125	0.99375	0.005	0	2	1.74E-10	1	1	1	NA	NA	NA	NA
1351289	1206813154	PD9774b	X	57088906	C	T	-	-	-	-	-	-	38	0	0	49	7	14.28571429	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.921658986	0.921658986	1	0.00125	0.99875	0	0	2	5.58E-09	1	1	1	NA	NA	NA	NA
1351289	1206813191	PD9774b	X	57672510	A	T	-	-	-	-	-	-	36	0	0	65	5	7.692307692	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.496277916	0.496277916	1	0.01	0.99	0	0	2	2.01E-05	1	1	1	NA	NA	NA	NA
1351289	1206814675	PD9774b	X	62233250	G	T	-	-	-	-	-	-	47	0	0	53	4	7.547169811	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.486914181	0.486914181	1	0.01	0.99	0	0	2	0.000150502	1	1	1	NA	NA	NA	NA
1351289	1206814791	PD9774b	X	64687139	G	T	-	-	-	-	-	-	38	0	0	43	9	20.93023256	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.350337584	1.350337584	1	0	0.99625	0.00375	0	2	9.45E-13	1	1	1	NA	NA	NA	NA
1351289	1206814799	PD9774b	X	64929957	C	T	MSN	CCDS14382.1	r.?	-	-	intronic	42	0	0	55	8	14.54545455	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.938416422	0.938416422	1	0.00125	0.9975	0.00125	0	2	3.86E-10	1	1	1	NA	NA	NA	NA
1351289	1206814875	PD9774b	X	66571356	A	T	-	-	-	-	-	-	35	0	0	57	5	8.771929825	188	0	0	220	23	10.45454545	2	1	1	1	NA	NA	NA	unphased	0.565930956	0.565930956	1	0.005	0.995	0	0	2	1.05E-05	1	4.09E-23	1	YES	somatic	1_1	custom.pulldown.HiSeq
1351289	1206814963	PD9774b	X	67553989	C	T	OPHN1	CCDS14388.1	r.?	-	-	intronic	21	0	0	54	7	12.96296296	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.836320191	0.836320191	1	0	0.99875	0.00125	0	2	1.13E-08	1	1	1	NA	NA	NA	NA
1351289	1206814985	PD9774b	X	67693609	C	T	-	-	-	-	-	-	26	0	0	61	8	13.1147541	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.846113168	0.846113168	1	0.0025	0.9975	0	0	2	9.09E-10	1	1	1	NA	NA	NA	NA
1351289	1206815021	PD9774b	X	68189416	A	T	-	-	-	-	-	-	28	0	0	58	8	13.79310345	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.889877642	0.889877642	1	0	1	0	0	2	5.99E-10	1	1	1	NA	NA	NA	NA
1351289	1206815042	PD9774b	X	68485628	A	T	-	-	-	-	-	-	30	0	0	32	3	9.375	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.60483871	0.60483871	1	0.0025	0.9975	0	0	2	0.000556213	1	1	1	NA	NA	NA	NA
1351289	1206815065	PD9774b	X	68770495	G	T	-	-	-	-	-	-	51	0	0	64	10	15.625	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.008064516	1.008064516	1	0.00125	0.99875	0	0	2	1.16E-12	1	1	1	NA	NA	NA	NA
1351289	1206815110	PD9774b	X	69265204	A	T	AWAT2	ENST00000276101	r.?	-	-	intronic	42	0	0	48	5	10.41666667	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.672043011	0.672043011	1	0	1	0	0	2	4.47E-06	1	1	1	NA	NA	NA	NA
1351289	1206815158	PD9774b	X	69835310	G	T	TEX11	CCDS35323.1	r.?	-	-	intronic	30	0	0	49	7	14.28571429	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.921658986	0.921658986	1	0.00125	0.99875	0	0	2	5.58E-09	1	1	1	NA	NA	NA	NA
1351289	1206815267	PD9774b	X	70849311	G	T	-	-	-	-	-	-	23	0	0	45	6	13.33333333	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.860215054	0.860215054	1	0.0025	0.99625	0.00125	0	2	1.08E-07	1	1	1	NA	NA	NA	NA
1351289	1206815350	PD9774b	X	72215483	A	T	-	-	-	-	-	-	38	0	0	51	4	7.843137255	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.506008855	0.506008855	1	0.00625	0.99375	0	0	2	0.000129466	1	1	1	NA	NA	NA	NA
1351289	1206815555	PD9774b	X	76109839	G	T	-	-	-	-	-	-	38	0	0	45	8	17.77777778	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.146953405	1.146953405	1	0.0025	0.99625	0.00125	0	2	7.14E-11	1	1	1	NA	NA	NA	NA
1351289	1206815576	PD9774b	X	76308495	G	T	-	-	-	-	-	-	38	0	0	54	11	20.37037037	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.314217443	1.314217443	1	0.00125	0.995	0.00375	0	2	3.84E-15	1	1	1	NA	NA	NA	NA
1351289	1206815577	PD9774b	X	76349917	A	T	-	-	-	-	-	-	29	0	0	45	8	17.77777778	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.146953405	1.146953405	1	0	0.99875	0.00125	0	2	7.14E-11	1	1	1	NA	NA	NA	NA
1351289	1206815648	PD9774b	X	77523235	G	T	CYSLTR1	CCDS14439.1	r.?	-	-	downstream	36	0	0	63	9	14.28571429	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.921658986	0.921658986	1	0.00375	0.99625	0	0	2	3.62E-11	1	1	1	NA	NA	NA	NA
1351289	1206815835	PD9774b	X	80827427	A	T	-	-	-	-	-	-	36	0	0	84	7	8.333333333	0	0	NA	0	0	NA	3	2	1	1	NA	NA	NA	unphased	0.620967742	0.620967742	1	0.005	0.995	0	0	2	2.53E-07	1	1	1	NA	NA	NA	NA
1351289	1206815951	PD9774b	X	82729860	A	T	-	-	-	-	-	-	41	0	0	54	5	9.259259259	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.597371565	0.597371565	1	0.01125	0.9875	0.00125	0	2	8.06E-06	1	1	1	NA	NA	NA	NA
1351289	1206815973	PD9774b	X	83008720	G	T	-	-	-	-	-	-	47	0	0	68	5	7.352941176	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.474383302	0.474383302	1	0.0125	0.9875	0	0	2	2.51E-05	1	1	1	NA	NA	NA	NA
1351289	1206816024	PD9774b	X	83825325	G	T	-	-	-	-	-	-	47	0	0	57	8	14.03508772	2	0	0	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.90548953	0.90548953	1	0.00375	0.99625	0	0	2	5.19E-10	1	1	1	NA	NA	NA	NA
1351289	1206816060	PD9774b	X	84350637	C	T	SATL1	CCDS35343.1	r.?	-	-	intronic	29	0	0	38	5	13.15789474	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.848896435	0.848896435	1	0.00375	0.99625	0	0	2	1.37E-06	1	1	1	NA	NA	NA	NA
1351289	1206816066	PD9774b	X	84523025	G	T	ZNF711	CCDS35344.1	r.?	-	-	intronic	26	0	0	55	4	7.272727273	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.469208211	0.469208211	1	0.01125	0.98875	0	0	2	0.000173903	1	1	1	NA	NA	NA	NA
1351289	1206816109	PD9774b	X	85196295	G	T	CHM	CCDS14454.1	r.?	-	-	intronic	13	0	0	51	7	13.7254902	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.885515497	0.885515497	1	0	0.99875	0.00125	0	2	7.46E-09	1	1	1	NA	NA	NA	NA
1351289	1206816159	PD9774b	X	85947014	G	T	DACH2	CCDS48140.1	r.?	-	-	intronic	32	0	0	52	7	13.46153846	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.868486352	0.868486352	1	0.00125	0.99875	0	0	2	8.58E-09	1	1	1	NA	NA	NA	NA
1351289	1206816571	PD9774b	X	89964598	G	T	-	-	-	-	-	-	32	0	0	56	7	12.5	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.806451613	0.806451613	1	0	1	0	0	2	1.46E-08	1	1	1	NA	NA	NA	NA
1351289	1206816578	PD9774b	X	90212388	C	T	-	-	-	-	-	-	35	0	0	45	5	11.11111111	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.716845878	0.716845878	1	0.0025	0.9975	0	0	2	3.23E-06	1	1	1	NA	NA	NA	NA
1351289	1206816722	PD9774b	X	92388150	A	T	-	-	-	-	-	-	35	0	0	48	5	10.41666667	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.672043011	0.672043011	1	0.0025	0.9975	0	0	2	4.47E-06	1	1	1	NA	NA	NA	NA
1351289	1206816725	PD9774b	X	92434658	G	T	-	-	-	-	-	-	32	0	0	50	6	12	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.774193548	0.774193548	1	0.005	0.995	0	0	2	2.06E-07	1	1	1	NA	NA	NA	NA
1351289	1206816736	PD9774b	X	92542151	G	T	-	-	-	-	-	-	35	0	0	50	6	12	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.774193548	0.774193548	1	0	1	0	0	2	2.06E-07	1	1	1	NA	NA	NA	NA
1351289	1206816761	PD9774b	X	92844596	A	T	-	-	-	-	-	-	40	0	0	53	5	9.433962264	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.608642727	0.608642727	1	0.0075	0.9925	0	0	2	7.34E-06	1	1	1	NA	NA	NA	NA
1351289	1206816871	PD9774b	X	94396434	A	T	-	-	-	-	-	-	44	0	0	46	9	19.56521739	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.26227209	1.26227209	1	0.00125	0.99875	0	0	2	1.82E-12	1	1	1	NA	NA	NA	NA
1351289	1206816909	PD9774b	X	95109519	C	T	-	-	-	-	-	-	35	0	0	54	9	16.66666667	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.075268817	1.075268817	1	0	1	0	0	2	8.48E-12	1	1	1	NA	NA	NA	NA
1351289	1206817068	PD9774b	X	97185982	A	T	-	-	-	-	-	-	33	0	0	32	3	9.375	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.60483871	0.60483871	1	0.00375	0.99625	0	0	2	0.000556213	1	1	1	NA	NA	NA	NA
1351289	1206817123	PD9774b	X	97861597	C	T	-	-	-	-	-	-	38	0	0	55	5	9.090909091	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.586510264	0.586510264	1	0.00375	0.99625	0	0	2	8.83E-06	1	1	1	NA	NA	NA	NA
1351289	1206817207	PD9774b	X	99487158	A	T	-	-	-	-	-	-	36	0	0	51	7	13.7254902	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.885515497	0.885515497	1	0	0.99875	0.00125	0	2	7.46E-09	1	1	1	NA	NA	NA	NA
1351289	1206817283	PD9774b	X	100284332	G	T	TRMT2B	CCDS14477.1	r.?	-	-	intronic	46	0	0	57	6	10.52631579	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.679117148	0.679117148	1	0.00375	0.99625	0	0	2	4.56E-07	1	1	1	NA	NA	NA	NA
1351289	1206817417	PD9774b	X	102230568	G	T	ENSG00000226623	ENST00000416953	r.?	-	-	intronic	39	0	0	56	8	14.28571429	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.921658986	0.921658986	1	0.00125	0.99875	0	0	2	4.48E-10	1	1	1	NA	NA	NA	NA
1351289	1206817418	PD9774b	X	102269356	G	T	ENSG00000226623	ENST00000416953	r.?	-	-	intronic	40	0	0	70	14	20	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.290322581	1.290322581	1	0	0.99625	0.00375	0	2	9.08E-19	1	1	1	NA	NA	NA	NA
1351289	1206817441	PD9774b	X	102444345	C	T	ENSG00000226623	ENST00000416953	r.?	-	-	intronic	28	0	0	50	9	18	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.161290323	1.161290323	1	0	0.99875	0.00125	0	2	4.07E-12	1	1	1	NA	NA	NA	NA
1351289	1206817457	PD9774b	X	102680011	A	T	-	-	-	-	-	-	36	0	0	52	10	19.23076923	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.240694789	1.240694789	1	0	0.99625	0.00375	0	2	1.28E-13	1	1	1	NA	NA	NA	NA
1351289	1206817464	PD9774b	X	102732944	A	T	-	-	-	-	-	-	39	0	0	62	8	12.90322581	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.832466181	0.832466181	1	0.0025	0.9975	0	0	2	1.04E-09	1	1	1	NA	NA	NA	NA
1351289	1206817563	PD9774b	X	104272188	A	T	IL1RAPL2	CCDS14517.1	r.?	-	-	intronic	36	0	0	55	8	14.54545455	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	0.938416422	0.938416422	1	0	1	0	0	2	3.86E-10	1	1	1	NA	NA	NA	NA
1351289	1206817745	PD9774b	X	107728880	C	T	COL4A5	CCDS35366.1	r.?	-	-	intronic	35	0	0	54	9	16.66666667	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.075268817	1.075268817	1	0	0.9975	0.0025	0	2	8.48E-12	1	1	1	NA	NA	NA	NA
1351289	1206817762	PD9774b	X	107971558	A	T	IRS4	CCDS14544.1	r.?	-	-	downstream	42	0	0	69	12	17.39130435	0	0	NA	0	0	NA	2	1	1	1	NA	NA	NA	unphased	1.122019635	1.122019635	1	0	0.99875	0.00125	0	2	1.65E-15	1	1	1	NA	NA	NA	NA
1351289	1206817937	PD9774b	X	111095830	C	T	TRPC5	CCDS14561.1	r.?	-	-	intronic	33	0	0	40	4	10	0	0	NA	0	0	NA	0.837155243	0	0	0.162844757	1	0	0.837155243	unphased	0.528876815	0.631754766	0.837155243	0.00375	0.99625	0	0	2	4.95E-05	1	1	1	NA	NA	NA	NA
1351289	1206817980	PD9774b	X	111620786	A	T	-	-	-	-	-	-	32	0	0	42	5	11.9047619	0	0	NA	0	0	NA	0.837155243	0	0	0.162844757	1	0	0.837155243	unphased	0.629615256	0.752089007	0.837155243	0.00625	0.99375	0	0	2	2.28E-06	1	1	1	NA	NA	NA	NA
1351289	1206818327	PD9774b	X	117038151	C	T	KLHL13	CCDS14571.1	r.?	-	-	intronic	44	0	0	56	8	14.28571429	0	0	NA	0	0	NA	0.837155243	0	0	0.162844757	1	0	0.837155243	unphased	0.755538307	0.902506808	0.837155243	0.00125	0.99875	0	0	2	4.48E-10	1	1	1	NA	NA	NA	NA
1351289	1206818388	PD9774b	X	118049893	G	T	-	-	-	-	-	-	29	0	0	42	7	16.66666667	0	0	NA	0	0	NA	0.837155243	0	0	0.162844757	1	0	0.837155243	unphased	0.881461358	1.05292461	0.837155243	0.00125	0.99875	0	0	2	1.81E-09	1	1	1	NA	NA	NA	NA
1351289	1206818963	PD9774b	X	127629792	A	T	-	-	-	-	-	-	32	0	0	51	6	11.76470588	0	0	NA	0	0	NA	0.396306917	0	0	0.603693083	1	0	0.396306917	unphased	0.570343508	0.570343508	1	0.00625	0.99375	0	0	2	2.32E-07	1	1	1	NA	NA	NA	NA
1351289	1206819224	PD9774b	X	133042129	A	T	GPC3	CCDS14638.1	r.?	-	-	intronic	36	0	0	35	7	20	0	0	NA	0	0	NA	0.396306917	0	0	0.603693083	1	0	0.396306917	unphased	0.969583964	0.969583964	1	0	0.99875	0.00125	0	2	4.65E-10	1	1	1	NA	NA	NA	NA
1351289	1206819394	PD9774b	X	136312206	C	T	-	-	-	-	-	-	24	0	0	48	5	10.41666667	0	0	NA	0	0	NA	0.396306917	0	0	0.603693083	1	0	0.396306917	unphased	0.504991648	1.274243841	0.396306917	0.0025	0.99375	0.00375	0	2	4.47E-06	1	1	1	NA	NA	NA	NA
1351289	1206819510	PD9774b	X	138575393	G	T	-	-	-	-	-	-	24	0	0	39	4	10.25641026	0	0	NA	0	0	NA	0.396306917	0	0	0.603693083	1	0	0.396306917	unphased	0.497222546	1.25464009	0.396306917	0	0.99875	0.00125	0	2	4.47E-05	1	1	1	NA	NA	NA	NA
1351289	1206819569	PD9774b	X	139682168	C	T	-	-	-	-	-	-	31	0	0	47	7	14.89361702	0	0	NA	0	0	NA	0.396306917	0	0	0.603693083	1	0	0.396306917	unphased	0.722030612	0.722030612	1	0.005	0.995	0	0	2	4.12E-09	1	1	1	NA	NA	NA	NA
1351289	1206819821	PD9774b	X	144563701	G	T	-	-	-	-	-	-	41	0	0	34	5	14.70588235	0	0	NA	0	0	NA	0.396306917	0	0	0.603693083	1	0	0.396306917	unphased	0.712929385	0.712929385	1	0.0075	0.9925	0	0	2	7.71E-07	1	1	1	NA	NA	NA	NA
1351289	1206819993	PD9774b	X	147461311	G	T	-	-	-	-	-	-	35	0	0	40	6	15	0	0	NA	0	0	NA	0.396306917	0	0	0.603693083	1	0	0.396306917	unphased	0.727187973	0.727187973	1	0.0025	0.9975	0	0	2	5.18E-08	1	1	1	NA	NA	NA	NA
1351289	1206820328	PD9774b	X	153742734	A	T	FAM3A	CCDS35453.1	r.?	-	-	intronic	30	0	0	36	4	11.11111111	0	0	NA	0	0	NA	0.396306917	0	0	0.603693083	1	0	0.396306917	unphased	0.538657758	1.35919343	0.396306917	0.0025	0.9975	0	0	2	3.24E-05	1	1	1	NA	NA	NA	NA