Normal	Chrom	Pos	Ref	Alt	Gene	Transcript	RNA	CDS	Protein	Effect	DIS_sample_PD9852b_depth	DIS_MtAll_PD9852b	DIS_MtAllPct_PD9852b	DIS_sample_PD9852c_depth	DIS_MtAll_PD9852c	DIS_MtAllPct_PD9852c	DIS_sample_PD9852h_depth	DIS_MtAll_PD9852h	DIS_MtAllPct_PD9852h	VAL_sample_PD9852b_depth	VAL_MtAll_PD9852b	VAL_MtAllPct_PD9852b	VAL_sample_WGA_PD9852c_depth	VAL_MtAll_WGA_PD9852c	VAL_MtAllPct_WGA_PD9852c	VAL_sample_WGA_PD9852h_depth	VAL_MtAll_WGA_PD9852h	VAL_MtAllPct_WGA_PD9852h	VAL_pbinom_WGA_PD9852h	in.discovery	in.validation	subclonal.CN.c	subclonal.CN.h	nMaj1.c	nMaj1.h	nMin1.c	nMin1.h	frac1.c	frac1.h	nMaj2.c	nMaj2.h	nMin2.c	nMin2.h	frac2.c	frac2.h	mutation.copy.number.c	subclonal.fraction.c	no.chrs.bearing.mut.c	mutation.copy.number.h	subclonal.fraction.h	no.chrs.bearing.mut.h	val.mutation.copy.number.c	val.subclonal.fraction.c	val.no.chrs.bearing.mut.c	val.mutation.copy.number.h	val.subclonal.fraction.h	val.no.chrs.bearing.mut.h	discovery.DP.cluster	validation.DP.cluster	pbinom_dis_b	pbinom_val_b	pbinom_dis_c	pbinom_val_c	pbinom_dis_h	pbinom_val_h	VAL_LOCUS	val_status_c	val_status_h	current.conf.status	val.platform
PD9852b	18	30985	C	G	-	-	-	-	-	-	85	0	0	54	12	22.2	54	5	9.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	3	2	3	0	0	1	1	NA	NA	NA	NA	NA	NA	0.886227545	0.886227545	1	0.908789474	0.908789474	1	NA	NA	0	NA	NA	1	4	NA	1	1	6.90E-17	1	0.00000806	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	83737	C	T	-	-	-	-	-	-	10	0	0	27	6	22.2	15	1	6.7	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1	NA	NA	1	NA	NA	1	NA	NA	1	NA	NA	1	1	4.23E-09	1	0.072431031	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	91957	G	A	POLR3K	CCDS10395.1	r.?	-	-	downstream	21	0	0	47	21	44.7	17	4	23.5	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1	NA	NA	1	NA	NA	1	NA	NA	1	NA	NA	1	1	5.29E-36	1	0.00000141	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	120745	C	T	-	-	-	-	-	-	13	0	0	18	6	33.3	18	4	22.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	8.735996287	5	4	3	4	2	0.264003713	1	5	NA	4	NA	0.735996287	NA	3.572428081	0.956218317	3.735996287	2.613368421	0.871122807	3	NA	NA	1	NA	NA	0	4	NA	1	1	2.75E-10	1	0.00000181	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	134185	G	T	-	-	-	-	-	-	53	0	0	54	10	18.5	30	1	3.3	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1	NA	NA	1	NA	NA	1	NA	NA	1	NA	NA	1	1	1.91E-13	1	0.139615808	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	27552435	C	T	-	-	-	-	-	-	49	0	0	51	27	52.9	21	5	23.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	2.640776447	1.320388224	2	2.801719298	0.933906433	3	NA	NA	0	NA	NA	1	4	NA	1	1	1.52E-48	1	5.95E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	187104	A	G	-	-	-	-	-	-	51	0	0	52	16	30.8	45	7	15.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	4.362325493	2	2	1	2	1	0.637674507	NA	3	NA	2	NA	0.362325493	1.537540918	0.768770459	2	1.73694383	1.73694383	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.33E-24	1	0.000000003	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	195956	G	T	FAM20C	CCDS47522.1	r.?	-	-	intronic	16	0	0	50	15	30	20	8	40	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7	4.260310284	4	2	3	2	1	0.739689716	NA	3	NA	2	NA	0.260310284	2.69760479	0.899201597	3	4.412896043	1.952340825	2.260310284	NA	NA	1	NA	NA	0	4	NA	1	1	5.83E-23	1	4.66E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	207140	G	A	HBZ	CCDS10397.1	r.?	-	-	downstream	37	0	0	38	15	39.5	18	5	27.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5.835011195	5	5	4	0	1	0.164988805	1	5	NA	1	NA	0.835011195	NA	3.091675729	0.976836229	3.164988805	3.272596491	1.090865497	3	NA	NA	0	NA	NA	0	4	NA	1	1	4.24E-25	1	2.54E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	239791	C	T	-	-	-	-	-	-	39	0	0	37	12	32.4	29	6	20.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.236173977	5.609750478	2	3	2	2	0.763826023	0.390249522	3	3	2	3	0.236173977	0.609750478	2.017933542	1.008966771	2	2.563007823	1.072276262	2.390249522	NA	NA	0	NA	NA	1	4	NA	1	1	4.03E-19	1	6.72E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	268377	C	T	ENSG00000186777	CCDS46990.1	r.?	-	-	intronic	61	0	0	35	20	57.1	49	8	16.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.661749236	3	2	2	0	1	0.338250764	1	2	NA	1	NA	0.661749236	NA	2.657299931	1.328649966	2	1.592824561	1.592824561	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.88E-37	1	1.47E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	2930593	C	A	-	-	-	-	-	-	21	0	0	40	13	32.5	18	3	16.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.62240519	0.811202595	2	1.965912281	1.965912281	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.30E-20	1	0.0000964	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	401075	A	T	IRF4	CCDS4469.1	r.?	-	-	intronic	53	0	0	70	22	31.4	32	6	18.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.236173977	5.609750478	2	3	2	2	0.763826023	0.390249522	3	3	2	3	0.236173977	0.609750478	1.955651643	0.977825821	2	2.327755897	0.973854769	2.390249522	NA	NA	0	NA	NA	0	4	NA	1	1	1.63E-33	1	1.27E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	420130	T	A	KDM5A	CCDS41736.1	r.3500a>u	c.3137A>T	p.Q1046L	missense	30	0	0	34	6	17.6	24	3	12.5	328	0	0	208	32	15.4	273	30	11	8.28E-22	TRUE	TRUE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.87859481	0.87859481	1	1.221491228	1.221491228	1	0.768770459	0.768770459	1	1.074912281	1.074912281	1	4	3	1	1	1.86E-08	4.58E-37	0.000233853	2.51E-30	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	3	506776	T	C	-	-	-	-	-	-	46	0	0	36	7	19.4	29	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1	NA	NA	1	NA	NA	1	NA	NA	1	NA	NA	1	1	5.74E-10	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	631032	G	A	PRKAR1B	CCDS34579.1	r.?	-	-	intronic	28	0	0	39	9	23.1	17	3	17.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7	4.260310284	4	2	3	2	1	0.739689716	NA	3	NA	2	NA	0.260310284	2.077155689	1.038577844	2	1.941674259	1.941674259	1	NA	NA	1	NA	NA	0	4	NA	1	1	3.62E-13	1	0.0000807	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	726394	G	C	PALM	CCDS32857.1	r.?	-	-	intronic	16	0	0	33	6	18.2	10	2	20	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	9	5.384331439	6	3	3	2	1	0.615668561	NA	4	NA	2	NA	0.384331439	2.000546906	2.000546906	1	2.431252253	2.431252253	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.54E-08	1	0.001095391	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	771960	G	A	HEATR2	CCDS34580.1	r.?	-	-	intronic	12	0	0	45	6	13.3	18	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	7	4.260310284	4	2	3	2	1	0.739689716	NA	3	NA	2	NA	0.260310284	1.195938124	1.195938124	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	0.000000108	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	772651	A	G	-	-	-	-	-	-	39	0	0	30	6	20	24	6	25	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	4.362325493	2	2	1	2	1	0.637674507	NA	3	NA	2	NA	0.362325493	0.998403194	0.998403194	1	2.783563829	1.178315113	2.362325493	NA	NA	0	NA	NA	0	4	NA	1	1	8.37E-09	1	1.95E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	799159	G	A	-	-	-	-	-	-	39	0	0	42	9	21.4	19	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	8.735996287	5	4	3	4	2	0.264003713	1	5	NA	4	NA	0.735996287	NA	2.295794623	1.147897311	2	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	7.51E-13	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	4193041	C	A	-	-	-	-	-	-	17	0	0	36	19	52.8	11	5	45.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	2.635784431	1.317892216	2	5.35622807	1.785409357	3	NA	NA	0	NA	NA	1	4	NA	1	1	1.51E-34	1	1.41E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	928896	C	G	-	-	-	-	-	-	18	0	0	34	8	23.5	12	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	8.735996287	5	4	3	4	2	0.264003713	1	5	NA	4	NA	0.735996287	NA	2.52108288	0.921449672	2.735996287	0	NA	0	NA	NA	0	NA	NA	0	NA	NA	1	1	6.32E-12	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	1003136	G	T	AC116351.4	ENST00000502737	r.?	-	-	upstream	17	0	0	19	11	57.9	15	5	33.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.311377246	1.155688623	2	2.921052632	1.460526316	2	NA	NA	1	NA	NA	1	4	NA	1	1	3.56E-21	1	0.000000009	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	40144530	C	T	HPCAL4	CCDS441.1	r.4646g>a	c.?	p.?	3'UTR variant	22	0	0	28	5	17.9	21	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	0.893570858	0.893570858	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	0.000000279	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	1024794	G	C	-	-	-	-	-	-	27	0	0	60	11	18.3	37	10	27	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.236173977	5.609750478	2	3	2	2	0.763826023	0.390249522	3	3	2	3	0.236173977	0.609750478	1.13975876	1.13975876	1	3.343053682	1.114351227	3	NA	NA	0	NA	NA	0	4	NA	1	1	1.34E-14	1	3.01E-15	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	5040832	G	T	-	-	-	-	-	-	43	0	0	44	13	29.5	34	7	20.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.472644711	1.472644711	1	2.425017544	0.808339181	3	NA	NA	0	NA	NA	1	4	NA	1	1	5.49E-20	1	3.73E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	5429238	C	A	-	-	-	-	-	-	59	0	0	36	8	22.2	33	1	3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.108227545	1.108227545	1	0.353157895	0.353157895	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.04E-11	1	0.15245715	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	8083463	G	A	ERRFI1	CCDS94.1	r.?	-	-	intronic	37	0	0	27	10	37	32	4	12.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.847045908	0.923522954	2	1.471491228	1.471491228	1	NA	NA	0	NA	NA	1	4	NA	1	1	7.62E-17	1	0.0000201	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	1169518	G	T	-	-	-	-	-	-	37	0	0	64	23	35.9	29	5	17.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.236173977	5.609750478	2	3	2	2	0.763826023	0.390249522	3	3	2	3	0.236173977	0.609750478	2.23592019	0.999886508	2.236173977	2.129649012	2.129649012	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.44E-36	1	0.000000336	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	1182340	C	T	-	-	-	-	-	-	15	0	0	50	22	44	27	4	14.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	9	5.384331439	6	3	3	2	1	0.615668561	NA	4	NA	2	NA	0.384331439	4.836487026	0.967297405	5	1.799126667	1.799126667	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.85E-37	1	0.00001	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	17	1228773	T	A	-	-	-	-	-	-	32	0	0	33	8	24.2	39	5	12.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	3.601202326	2	3	0	0	1	0.398797674	NA	3	NA	1	NA	0.601202326	0.966067864	0.966067864	1	1.327760915	1.327760915	1	NA	NA	0	NA	NA	1	4	NA	1	1	4.85E-12	1	0.00000156	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	1238813	C	T	ACAP3	CCDS19.2	r.?	-	-	intronic	20	0	0	20	6	30	7	2	28.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	8.735996287	5	4	3	4	2	0.264003713	1	5	NA	4	NA	0.735996287	NA	3.218403676	1.072801225	3	3.36677193	3.36677193	1	NA	NA	1	NA	NA	0	4	NA	1	1	5.70E-10	1	0.000516315	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	1384314	C	T	ATAD3C	CCDS44039.1	r.?	-	-	upstream	27	0	0	43	9	20.9	26	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	8.735996287	5	4	3	4	2	0.264003713	1	5	NA	4	NA	0.735996287	NA	2.242154561	1.121077281	2	0	NA	0	NA	NA	0	NA	NA	0	NA	NA	1	1	9.45E-13	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	1385360	T	A	ENSG00000163945	CCDS33938.1	r.?	-	-	downstream	67	0	0	24	7	29.2	34	5	14.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.661749236	3	2	2	0	1	0.338250764	1	2	NA	1	NA	0.661749236	NA	1.358899439	1.358899439	1	1.436473684	1.436473684	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.51E-11	1	0.000000771	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	1395178	G	A	-	-	-	-	-	-	20	1	5	50	16	32	26	12	46.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7	4.260310284	4	2	3	2	1	0.739689716	NA	3	NA	2	NA	0.260310284	2.87744511	0.95914837	3	5.09689493	2.254953652	2.260310284	NA	NA	1	NA	NA	0	4	NA	0.09538952	1	6.40E-25	1	2.21E-21	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	9122836	C	A	SLC2A5	CCDS99.1	r.?	-	-	intronic	40	0	0	46	6	13	29	5	17.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	0.648962076	0.648962076	1	2.02477193	2.02477193	1	NA	NA	0	NA	NA	1	4	NA	1	1	0.000000123	1	0.000000336	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	1509539	C	T	INTS1	CCDS47526.1	r.?	-	-	downstream	13	0	0	35	11	31.4	12	0	0	164	0	0	2	0	0	0	0	NA	1	FALSE	FALSE	7	4.260310284	4	2	3	2	1	0.739689716	NA	3	NA	2	NA	0.260310284	2.823493014	0.941164338	3	0	NA	0	0	0	1	NA	NA	0	NA	NA	1	1	1.82E-17	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	1573987	G	A	IFT140	CCDS10439.1	r.?	-	-	intronic	17	0	0	27	16	59.3	15	3	20	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5.835011195	5	5	4	0	1	0.164988805	1	5	NA	1	NA	0.835011195	NA	4.641427108	0.928285422	5	2.354385965	2.354385965	1	NA	NA	0	NA	NA	0	4	NA	1	1	1.89E-30	1	0.0000544	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	1666823	G	A	SLC35E2	CCDS33.1	r.?	-	-	intronic	9	0	0	33	20	60.6	19	7	36.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	8.735996287	5	4	3	4	2	0.264003713	1	5	NA	4	NA	0.735996287	NA	6.501175426	1.372715482	4.735996287	4.332070175	1.444023392	3	NA	NA	1	NA	NA	0	4	NA	1	1	5.14E-38	1	3.73E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	1732074	G	A	-	-	-	-	-	-	33	0	0	18	4	22.2	21	2	9.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1	1	1	1	0	0	1	1	NA	NA	NA	NA	NA	NA	0.664227545	0.664227545	1	0.738333333	0.738333333	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.00000181	1	0.004928472	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	1758605	G	A	-	-	-	-	-	-	64	0	0	35	17	48.6	39	10	25.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	3	2	3	0	0	1	1	NA	NA	NA	NA	NA	NA	1.94011976	0.97005988	2	2.501614035	0.833871345	3	NA	NA	0	NA	NA	1	4	NA	1	1	3.18E-30	1	5.44E-15	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	1761248	C	G	ENSG00000224268	ENST00000436115	r.?	-	-	intronic	15	0	0	40	13	32.5	32	6	18.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7	4.260310284	4	2	3	2	1	0.739689716	NA	3	NA	2	NA	0.260310284	2.92240519	0.974135063	3	2.07406114	2.07406114	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.30E-20	1	1.27E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	1837989	G	A	AL691432.2	ENST00000508906	r.?	-	-	intronic	23	0	0	52	15	28.8	21	9	42.9	250	0	0	15	4	26.7	21	2	9.5	0.018511675	TRUE	TRUE	8.735996287	5	4	3	4	2	0.264003713	1	5	NA	4	NA	0.735996287	NA	3.089667529	1.029889176	3	5.050157895	1.683385965	3	2.864379272	0.954793091	3	1.118333333	1.118333333	1	4	3	1	1	1.15E-22	0.000000816	5.44E-16	0.004928472	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	1847369	T	A	-	-	-	-	-	-	45	0	0	30	17	56.7	22	4	18.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.263473054	1.131736527	2	1.596491228	1.596491228	1	NA	NA	1	NA	NA	1	4	NA	1	1	8.59E-32	1	0.00000425	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	41168235	G	A	NFYC	CCDS44120.1	r.?	-	-	intronic	32	0	0	44	8	18.2	23	2	8.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	0.908546906	0.908546906	1	1.024157895	1.024157895	1	NA	NA	0	NA	NA	1	4	NA	1	1	5.90E-11	1	0.00589844	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	1932528	C	T	-	-	-	-	-	-	55	0	0	41	7	17.1	37	1	2.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.37044448	5	2	3	1	2	0.62955552	1	2	NA	2	NA	0.37044448	NA	0.916980737	0.916980737	1	0.317842105	0.317842105	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.51E-09	1	0.169281299	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	16076457	T	A	TMEM82	CCDS30608.1	r.?	-	-	downstream	23	0	0	39	18	46.2	22	8	36.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	2.306311377	1.153155689	2	4.284982456	1.428327485	3	NA	NA	0	NA	NA	1	4	NA	1	1	2.15E-31	1	1.17E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	1943869	T	A	KBTBD11	CCDS34795.1	r.?	-	-	intronic	32	0	0	21	3	14.3	25	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1	2.620991218	1	2	0	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0.427858283	0.427858283	1	0	0	1	NA	NA	0	NA	NA	0	3	NA	1	1	0.000155401	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	1991741	G	A	-	-	-	-	-	-	51	0	0	39	9	23.1	35	2	5.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.37044448	5	2	3	1	2	0.62955552	1	2	NA	2	NA	0.37044448	NA	1.238728363	1.238728363	1	0.671	0.671	1	NA	NA	0	NA	NA	1	4	NA	1	1	3.62E-13	1	0.013332991	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	2028888	C	T	MIR943	ENST00000455762	r.?	-	-	intronic	34	0	0	40	9	22.5	36	5	13.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.661749236	3	2	2	0	1	0.338250764	1	2	NA	1	NA	0.661749236	NA	1.047097171	1.047097171	1	1.358298246	1.358298246	1	NA	NA	0	NA	NA	1	4	NA	1	1	4.64E-13	1	0.00000104	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	2065582	G	A	PRKCZ	CCDS37.1	r.?	-	-	intronic	14	0	0	42	16	38.1	13	3	23.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	8.735996287	5	4	3	4	2	0.264003713	1	5	NA	4	NA	0.735996287	NA	4.087372669	1.021843167	4	2.719315789	2.719315789	1	NA	NA	1	NA	NA	0	4	NA	1	1	2.25E-26	1	0.0000344	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	2083186	A	T	MYOM2	CCDS5957.1	r.?	-	-	intronic	55	0	0	27	11	40.7	34	3	8.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1	2.620991218	1	2	0	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.217750499	1.217750499	1	0.826577052	0.826577052	1	NA	NA	0	NA	NA	0	4	NA	1	1	5.92E-19	1	0.000666058	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	2098029	G	A	-	-	-	-	-	-	66	0	0	41	5	12.2	35	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.37044448	5	2	3	1	2	0.62955552	1	2	NA	2	NA	0.37044448	NA	0.654220175	0.654220175	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	0.00000202	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	2114010	G	A	-	-	-	-	-	-	56	0	0	48	12	25	44	11	25	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.37044448	5	2	3	1	2	0.62955552	1	2	NA	2	NA	0.37044448	NA	1.340615112	1.340615112	1	2.942982456	0.980994152	3	NA	NA	0	NA	NA	1	4	NA	1	1	1.44E-17	1	3.22E-16	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	2119954	C	T	CACNA1C	ENST00000402845	r.?	-	-	intronic	32	0	0	41	10	24.4	32	4	12.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.218051896	1.218051896	1	1.221491228	1.221491228	1	NA	NA	1	NA	NA	1	4	NA	1	1	9.51E-15	1	0.0000201	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	2175920	G	A	SKI	CCDS39.1	r.?	-	-	intronic	50	0	0	48	17	35.4	41	5	12.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	8.735996287	5	4	3	4	2	0.264003713	1	5	NA	4	NA	0.735996287	NA	3.797716338	1.016520373	3.735996287	1.436175439	1.436175439	1	NA	NA	0	NA	NA	0	4	NA	1	1	2.80E-27	1	0.00000202	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	2201413	A	G	-	-	-	-	-	-	41	0	0	21	5	23.8	17	1	5.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1	1	1	1	0	0	1	1	NA	NA	NA	NA	NA	NA	0.7120998	0.7120998	1	0.45854386	0.45854386	1	NA	NA	1	NA	NA	1	4	NA	1	1	5.95E-08	1	0.081683532	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	2204919	A	G	CNTN4	CCDS43041.1	r.?	-	-	intronic	37	0	0	43	6	14	28	2	7.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.37044448	5	2	3	1	2	0.62955552	1	2	NA	2	NA	0.37044448	NA	0.750744463	0.750744463	1	0.835807018	0.835807018	1	NA	NA	0	NA	NA	1	4	NA	1	1	8.13E-08	1	0.008668191	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	2216761	G	A	SKI	CCDS39.1	r.?	-	-	intronic	23	0	0	41	16	39	29	5	17.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	8.735996287	5	4	3	4	2	0.264003713	1	5	NA	4	NA	0.735996287	NA	4.183924779	1.045981195	4	2.02477193	2.02477193	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.40E-26	1	0.000000336	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	2217580	C	A	MAD1L1	CCDS43539.1	r.?	-	-	intronic	43	0	0	55	16	29.1	35	8	22.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7	4.260310284	4	2	3	2	1	0.739689716	NA	3	NA	2	NA	0.260310284	2.616676647	0.872225549	3	2.526382985	1.117715122	2.260310284	NA	NA	1	NA	NA	0	4	NA	1	1	3.78E-24	1	8.15E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	2235445	C	T	CACNA1C	CCDS44794.1	r.?	-	-	intronic	34	0	0	27	4	14.8	34	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.738818363	0.738818363	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.00001	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	2302507	C	G	-	-	-	-	-	-	51	0	0	35	8	22.9	25	2	8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.914171657	0.914171657	1	0.701754386	0.701754386	1	NA	NA	1	NA	NA	1	4	NA	1	1	8.15E-12	1	0.006948068	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	22562765	C	T	-	-	-	-	-	-	21	0	0	36	7	19.4	10	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	0.968451098	0.968451098	1	0	0	1	NA	NA	0	NA	NA	1	4	NA	1	1	5.74E-10	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	2362573	T	C	CNTN4	CCDS43041.1	r.?	-	-	intronic	66	0	0	69	6	8.7	35	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.37044448	5	2	3	1	2	0.62955552	1	2	NA	2	NA	0.37044448	NA	0.466534059	1.259389961	0.37044448	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	0.00000143	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	22829896	G	A	ZBTB40	CCDS224.1	r.?	-	-	intronic	43	0	0	39	21	53.8	29	7	24.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	2.685704591	1.342852295	2	2.837035088	0.945678363	3	NA	NA	0	NA	NA	1	4	NA	1	1	2.73E-38	1	1.11E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	2408028	G	T	-	-	-	-	-	-	34	0	0	25	4	16	34	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	4	4	0	0	1	1	NA	NA	NA	NA	NA	NA	0.958722555	0.958722555	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.00000727	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	2480979	A	G	CCNF	CCDS10467.1	r.?	-	-	intronic	44	0	0	44	9	20.5	47	0	0	161	0	0	63	9	14.3	60	3	5	0.022420165	FALSE	TRUE	5.835011195	5	5	4	0	1	0.164988805	1	5	NA	1	NA	0.835011195	NA	1.604540568	1.604540568	1	0	NA	0	1.119264884	1.119264884	1	0.588596491	0.588596491	1	NA	3	1	1	1.18E-12	3.62E-11	1	0.003458198	YES	1_1	0_1	somatic	custom.pulldown.HiSeq
PD9852b	1	28192703	C	T	-	-	-	-	-	-	29	0	0	27	5	18.5	26	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	0.923522954	0.923522954	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	0.00000023	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	2487839	C	T	-	-	-	-	-	-	49	0	0	34	8	23.5	25	0	0	152	0	0	197	56	28.4	263	2	0.8	0.739906466	TRUE	TRUE	1	2.620991218	1	2	0	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0.703123752	0.703123752	1	0	0	1	0.849732535	0.849732535	1	0.075143368	0.075143368	1	3	2	1	1	6.32E-12	5.14E-80	1	0.378760394	YES	1_1	0_0	somatic	custom.pulldown.HiSeq
PD9852b	2	2584223	T	C	-	-	-	-	-	-	12	1	8.3	19	14	73.7	15	5	33.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	4	4	0	0	1	1	NA	NA	NA	NA	NA	NA	4.416115768	1.104028942	4	3.587052632	0.896763158	4	NA	NA	1	NA	NA	1	4	NA	0.058377193	1	6.93E-29	1	0.000000009	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	30319823	G	T	-	-	-	-	-	-	47	0	0	39	9	23.1	45	3	6.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.153155689	1.153155689	1	0.788719298	0.788719298	1	NA	NA	0	NA	NA	1	4	NA	1	1	3.62E-13	1	0.001516071	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	2647500	C	T	-	-	-	-	-	-	43	0	0	32	19	59.4	38	9	23.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.371257485	1.185628743	2	2.078947368	1.039473684	2	NA	NA	1	NA	NA	1	4	NA	1	1	6.23E-36	1	2.79E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	2688312	C	G	TTC34	ENST00000401094	r.?	-	-	intronic	29	0	0	135	9	6.7	35	0	0	104	1	1	0	0	NA	2	0	0	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	0.33446507	0.33446507	1	0	0	1	NA	NA	0	0	0	1	3	NA	1	0.406254409	3.46E-08	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	2710600	G	A	TTC34	ENST00000401094	r.?	-	-	upstream	58	0	0	51	8	15.7	36	6	16.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	0.783746507	0.783746507	1	1.965912281	1.965912281	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.05E-10	1	2.68E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	49415385	G	C	AGBL4	CCDS44137.1	r.?	-	-	intronic	44	0	0	41	6	14.6	39	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	0.728834331	0.728834331	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	6.05E-08	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	2756053	G	A	-	-	-	-	-	-	19	0	0	38	12	31.6	16	2	12.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	4	4	0	0	1	1	NA	NA	NA	NA	NA	NA	1.893477046	0.946738523	2	1.346491228	1.346491228	1	NA	NA	1	NA	NA	1	4	NA	1	1	5.86E-19	1	0.002863359	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	2758439	G	C	TNIP2	CCDS3362.1	r.?	-	-	upstream	10	0	0	22	5	22.7	12	1	8.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.661749236	3	2	2	0	1	0.338250764	1	2	NA	1	NA	0.661749236	NA	1.056404701	1.056404701	1	0.811070175	0.811070175	1	NA	NA	0	NA	NA	1	4	NA	1	1	7.67E-08	1	0.058377193	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	2774871	T	G	-	-	-	-	-	-	47	0	0	33	9	27.3	26	4	15.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.089820359	1.089820359	1	1.350877193	1.350877193	1	NA	NA	1	NA	NA	1	4	NA	1	1	6.76E-14	1	0.00000856	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	17	2778673	G	A	RAP1GAP2	CCDS45573.1	r.?	-	-	intronic	22	0	0	33	14	42.4	23	8	34.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	3.601202326	2	3	0	0	1	0.398797674	NA	3	NA	1	NA	0.601202326	1.69261477	0.846307385	2	3.609849988	1.203283329	3	NA	NA	0	NA	NA	1	4	NA	1	1	4.57E-24	1	1.79E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	2851431	C	T	ARSD	CCDS35196.1	r.?	-	-	upstream	39	0	0	50	25	50	28	6	21.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	4.32434803	5	2	1	2	1	0.67565197	NA	3	NA	2	NA	0.32434803	3.996007984	0.999001996	4	2.374603461	1.021621302	2.32434803	NA	NA	0	NA	NA	0	4	NA	1	1	3.34E-44	1	5.36E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	17	2881407	A	C	RAP1GAP2	CCDS45573.1	r.?	-	-	intronic	54	0	0	42	12	28.6	25	4	16	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	3.601202326	2	3	0	0	1	0.398797674	NA	3	NA	1	NA	0.601202326	1.141716567	1.141716567	1	1.659701144	1.659701144	1	NA	NA	0	NA	NA	0	4	NA	1	1	2.35E-18	1	0.00000727	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	2882033	A	G	-	-	-	-	-	-	40	0	0	37	6	16.2	25	2	8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.808706587	0.808706587	1	0.781754386	0.781754386	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.18E-08	1	0.006948068	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	2883687	G	A	PTPRA	CCDS13038.1	r.?	-	-	intronic	33	0	0	40	9	22.5	26	5	19.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	4.362325493	2	2	1	2	1	0.637674507	NA	3	NA	2	NA	0.362325493	1.123203593	1.123203593	1	2.137777021	2.137777021	1	NA	NA	0	NA	NA	0	4	NA	1	1	4.64E-13	1	0.000000188	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	2883919	C	T	CNTN4	CCDS43041.1	r.?	-	-	intronic	45	0	0	48	17	35.4	34	6	17.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.37044448	5	2	3	1	2	0.62955552	1	2	NA	2	NA	0.37044448	NA	1.898310999	0.949155499	2	2.071859649	2.071859649	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.80E-27	1	1.86E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	2885862	C	T	PTPRA	CCDS13038.1	r.?	-	-	intronic	50	0	0	36	14	38.9	29	4	13.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	4.362325493	2	2	1	2	1	0.637674507	NA	3	NA	2	NA	0.362325493	1.941894212	0.970947106	2	1.536527234	1.536527234	1	NA	NA	0	NA	NA	0	4	NA	1	1	2.09E-23	1	0.0000134	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	2920156	T	A	-	-	-	-	-	-	50	0	0	25	9	36	34	5	14.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1	1	1	1	0	0	1	1	NA	NA	NA	NA	NA	NA	1.077125749	1.077125749	1	1.142473684	1.142473684	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.71E-15	1	0.000000771	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	2930311	C	T	ZNF77	CCDS12099.1	r.?	-	-	downstream	25	0	0	35	8	22.9	33	1	3	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	9	5.384331439	6	3	3	2	1	0.615668561	NA	4	NA	2	NA	0.384331439	2.517171657	0.839057219	3	0.364687838	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	8.15E-12	1	0.15245715	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	33253566	C	A	YARS	CCDS368.1	r.?	-	-	intronic	26	0	0	34	8	23.5	20	4	20	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.173123752	1.173123752	1	2.354385965	2.354385965	1	NA	NA	0	NA	NA	1	4	NA	1	1	6.32E-12	1	0.00000284	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	2948927	T	C	SERPINB6	CCDS4479.1	r.2731a>g	c.736A>G	p.K246E	missense	19	0	0	43	22	51.2	21	5	23.8	261	1	0.4	189	64	33.9	161	43	26.7	8.42E-48	TRUE	TRUE	4.236173977	5.609750478	2	3	2	2	0.763826023	0.390249522	3	3	2	3	0.236173977	0.609750478	3.188833252	1.426021984	2.236173977	2.946839912	0.982279971	3	2.111356391	1.055678196	2	3.305908641	1.101969547	3	4	3	1	0.729713674	2.27E-39	6.24E-97	5.95E-08	1.71E-60	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	1	45451085	C	T	EIF2B3	CCDS517.1	r.?	-	-	intronic	42	0	0	53	20	37.7	32	5	15.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6.392427913	5	5	3	1	2	0.607572087	1	5	NA	2	NA	0.392427913	NA	3.160935343	1.053645114	3	1.836421053	1.836421053	1	NA	NA	0	NA	NA	0	4	NA	1	1	1.65E-32	1	0.000000562	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	2958553	T	A	CARD11	CCDS5336.2	r.?	-	-	intronic	22	0	0	52	23	44.2	16	3	18.8	305	0	0	57	16	28.1	31	7	22.6	2.13E-08	TRUE	TRUE	7	4.260310284	4	2	3	2	1	0.739689716	NA	3	NA	2	NA	0.260310284	3.974471058	0.993617764	4	2.07406114	2.07406114	1	2.526756487	0.842252162	3	2.493286264	1.103072566	2.260310284	4	3	1	1	3.66E-39	7.28E-24	0.0000667	1.85E-10	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	1	51278574	C	A	FAF1	CCDS554.1	r.?	-	-	intronic	51	0	0	39	7	17.9	35	4	11.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	0.893570858	0.893570858	1	1.342	1.342	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.04E-09	1	0.0000289	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	2973074	A	C	NAP1L4	CCDS41599.1	r.?	-	-	intronic	38	0	0	29	5	17.2	16	2	12.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.858626747	0.858626747	1	1.221491228	1.221491228	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.000000336	1	0.002863359	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	3087229	G	A	CCDC64B	CCDS45393.1	r.?	-	-	upstream	24	0	0	41	22	53.7	16	6	37.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5.835011195	5	5	4	0	1	0.164988805	1	5	NA	1	NA	0.835011195	NA	4.203113587	1.009153634	4.164988805	4.414473684	1.103618421	4	NA	NA	0	NA	NA	0	4	NA	1	1	5.33E-40	1	1.20E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	3141864	A	T	PRDM16	CCDS44048.1	r.?	-	-	intronic	22	0	0	47	8	17	39	4	10.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	0.848642715	0.848642715	1	1.212508772	1.212508772	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.03E-10	1	0.0000447	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	3166750	G	A	GNA15	CCDS12104.1	r.?	-	-	downstream	37	0	0	54	15	27.8	28	6	21.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	9	5.384331439	6	3	3	2	1	0.615668561	NA	4	NA	2	NA	0.384331439	3.055780439	1.01859348	3	2.60143991	1.091056331	2.384331439	NA	NA	1	NA	NA	0	4	NA	1	1	2.20E-22	1	5.36E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	3207961	G	A	-	-	-	-	-	-	41	0	0	33	18	54.5	35	9	25.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.175648703	1.087824351	2	2.254385965	1.127192982	2	NA	NA	1	NA	NA	1	4	NA	1	1	3.68E-33	1	1.23E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	62108533	T	G	-	-	-	-	-	-	38	0	0	56	14	25	38	7	18.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.248003992	1.248003992	1	2.166035088	1.083017544	2	NA	NA	0	NA	NA	1	4	NA	1	1	2.91E-20	1	8.61E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	3227733	C	A	-	-	-	-	-	-	45	0	0	45	9	20	39	4	10.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.37044448	5	2	3	1	2	0.62955552	1	2	NA	2	NA	0.37044448	NA	1.07249209	1.07249209	1	1.212508772	1.212508772	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.47E-12	1	0.0000447	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	63873093	A	G	ALG6	CCDS30735.1	r.?	-	-	intronic	60	0	0	35	5	14.3	34	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	0.713858283	0.713858283	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	0.000000895	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	3259101	G	A	-	-	-	-	-	-	25	0	0	31	7	22.6	27	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.128195609	1.128195609	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	1.85E-10	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	65759981	T	C	DNAJC6	CCDS30739.1	r.?	-	-	intronic	46	0	0	42	10	23.8	37	13	35.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.1880998	1.1880998	1	4.131947368	1.377315789	3	NA	NA	0	NA	NA	1	4	NA	1	1	1.24E-14	1	3.89E-21	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	3268182	C	T	TSPAN9	CCDS8520.1	r.?	-	-	intronic	28	0	0	46	9	19.6	31	3	9.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.97843513	0.97843513	1	0.947877193	0.947877193	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.82E-12	1	0.000505952	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	3306173	C	G	-	-	-	-	-	-	30	0	0	28	10	35.7	23	5	21.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.661749236	3	2	2	0	1	0.338250764	1	2	NA	1	NA	0.661749236	NA	1.661394178	1.661394178	1	2.120508772	2.120508772	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.18E-16	1	9.75E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	3313753	G	C	-	-	-	-	-	-	60	0	0	43	15	34.9	36	7	19.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.37044448	5	2	3	1	2	0.62955552	1	2	NA	2	NA	0.37044448	NA	1.871498696	0.935749348	2	2.283754386	1.141877193	2	NA	NA	0	NA	NA	1	4	NA	1	1	4.05E-24	1	5.74E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	3321089	G	A	TSSC1	CCDS1651.1	r.?	-	-	intronic	21	0	0	38	5	13.2	19	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	4	4	0	0	1	1	NA	NA	NA	NA	NA	NA	0.790946108	0.790946108	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.00000137	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	3363808	G	A	NFIC	CCDS45914.1	r.?	-	-	intronic	15	0	0	46	19	41.3	26	3	11.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	14	5.384331439	11	3	3	2	1	0.615668561	NA	4	NA	2	NA	0.384331439	6.604702595	0.943528942	7	1.397970045	1.397970045	1	NA	NA	1	NA	NA	0	4	NA	1	1	6.97E-32	1	0.000298167	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	3363810	G	A	NFIC	CCDS45914.1	r.?	-	-	intronic	14	0	0	46	19	41.3	27	4	14.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	14	5.384331439	11	3	3	2	1	0.615668561	NA	4	NA	2	NA	0.384331439	6.604702595	0.943528942	7	1.799126667	1.799126667	1	NA	NA	1	NA	NA	0	4	NA	1	1	6.97E-32	1	0.00001	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	3417191	G	A	NFIC	CCDS45914.1	r.?	-	-	intronic	26	0	0	68	15	22.1	40	6	15	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	14	5.384331439	11	3	3	2	1	0.615668561	NA	4	NA	2	NA	0.384331439	3.534235529	0.883558882	4	1.823439189	1.823439189	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.06E-20	1	5.18E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	68915579	G	A	RPE65	CCDS643.1	r.64c>u	c.10C>T	p.Q4*	nonsense	61	0	0	48	12	25	47	6	12.8	164	0	0	188	12	6.4	223	37	16.6	3.84E-33	TRUE	TRUE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.248003992	1.248003992	1	1.506807018	1.506807018	1	0.319489022	0.319489022	1	1.954140351	0.977070175	2	4	1	1	1	1.44E-17	3.08E-10	0.000000141	6.95E-44	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	8	3423481	G	A	CSMD1	ENST00000318252	r.?	-	-	intronic	44	0	0	31	13	41.9	33	1	3	0	0	NA	1	0	0	0	0	NA	1	TRUE	FALSE	1	2.620991218	1	2	0	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.253654691	1.253654691	1	0.281787631	0.281787631	1	0	NA	0	NA	NA	1	4	NA	1	1	2.32E-22	1	0.15245715	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	3463034	G	A	TTC15	CCDS1652.1	r.?	-	-	intronic	16	0	0	51	7	13.7	21	1	4.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	4	4	0	0	1	1	NA	NA	NA	NA	NA	NA	0.820906188	0.820906188	1	0.517052632	0.517052632	1	NA	NA	1	NA	NA	1	4	NA	1	1	7.46E-09	1	0.099912572	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	3478516	T	A	-	-	-	-	-	-	38	0	0	24	7	29.2	27	6	22.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.457668663	1.457668663	1	2.169368421	1.084684211	2	NA	NA	1	NA	NA	1	4	NA	1	1	2.51E-11	1	4.23E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	73641337	C	A	-	-	-	-	-	-	41	0	0	43	10	23.3	35	3	8.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.163139721	1.163139721	1	1.012385965	1.012385965	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.61E-14	1	0.000725791	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	74107280	C	T	-	-	-	-	-	-	49	0	0	39	9	23.1	39	6	15.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.153155689	1.153155689	1	1.812877193	1.812877193	1	NA	NA	0	NA	NA	1	4	NA	1	1	3.62E-13	1	4.43E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	3556081	G	C	-	-	-	-	-	-	20	0	0	20	8	40	15	2	13.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1	1	1	1	0	0	1	1	NA	NA	NA	NA	NA	NA	1.196806387	1.196806387	1	1.033666667	1.033666667	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.66E-14	1	0.002513772	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	3558127	C	A	-	-	-	-	-	-	45	0	0	25	9	36	31	6	19.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.797125749	0.898562874	2	1.895754386	1.895754386	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.71E-15	1	1.03E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	80843666	G	A	-	-	-	-	-	-	43	0	0	53	21	39.6	31	7	22.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.976838323	0.988419162	2	2.66045614	0.886818713	3	NA	NA	0	NA	NA	1	4	NA	1	1	1.30E-34	1	1.85E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	3619513	G	T	TP73	CCDS49.1	r.?	-	-	intronic	17	0	0	35	15	42.9	11	2	18.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	2.14157485	1.070787425	2	2.142491228	2.142491228	1	NA	NA	0	NA	NA	1	4	NA	1	1	9.02E-26	1	0.001334363	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	3694845	C	T	SDK1	CCDS34590.1	r.?	-	-	intronic	29	0	0	33	10	30.3	24	9	37.5	0	0	NA	2	0	0	0	0	NA	1	TRUE	FALSE	7	4.260310284	4	2	3	2	1	0.739689716	NA	3	NA	2	NA	0.260310284	2.724580838	0.908193613	3	4.137090041	1.830319523	2.260310284	0	0	1	NA	NA	0	4	NA	1	1	8.14E-16	1	2.39E-15	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	3785602	C	A	SDK1	CCDS34590.1	r.?	-	-	intronic	39	0	0	49	15	30.6	23	4	17.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7	4.260310284	4	2	3	2	1	0.739689716	NA	3	NA	2	NA	0.260310284	2.751556886	0.917185629	3	1.919609779	1.919609779	1	NA	NA	1	NA	NA	0	4	NA	1	1	4.10E-23	1	0.00000513	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	3794457	C	T	ENSG00000214866	ENST00000423741	r.?	-	-	intronic	41	0	0	35	12	34.3	24	1	4.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	4	4	0	0	1	1	NA	NA	NA	NA	NA	NA	2.055261477	1.027630739	2	0.452421053	0.452421053	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.83E-19	1	0.113346489	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	3801183	C	G	SDK1	CCDS34590.1	r.?	-	-	intronic	25	0	0	39	12	30.8	25	4	16	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7	4.260310284	4	2	3	2	1	0.739689716	NA	3	NA	2	NA	0.260310284	2.769540918	0.923180306	3	1.765158417	1.765158417	1	NA	NA	1	NA	NA	0	4	NA	1	1	8.43E-19	1	0.00000727	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	3810998	C	T	C1orf174	CCDS53.1	r.?	-	-	intronic	15	0	0	32	10	31.2	18	5	27.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.557508982	1.557508982	1	3.272596491	1.090865497	3	NA	NA	0	NA	NA	1	4	NA	1	1	5.70E-16	1	2.54E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	76348986	A	T	MSH4	CCDS670.1	r.?	-	-	intronic	52	0	0	45	15	33.3	35	8	22.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.662341317	0.831170659	2	2.69577193	0.898590643	3	NA	NA	0	NA	NA	1	4	NA	1	1	9.14E-24	1	8.15E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	79871371	G	T	-	-	-	-	-	-	45	0	0	36	16	44.4	18	2	11.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	2.21645509	1.108227545	2	1.306684211	1.306684211	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.01E-27	1	0.003626632	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	3913976	G	T	-	-	-	-	-	-	32	0	0	40	8	20	41	8	19.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.236173977	5.609750478	2	3	2	2	0.763826023	0.390249522	3	3	2	3	0.236173977	0.609750478	1.245637989	1.245637989	1	2.414427659	1.010115319	2.390249522	NA	NA	0	NA	NA	0	4	NA	1	1	2.61E-11	1	3.22E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	3920032	G	A	-	-	-	-	-	-	23	0	0	28	15	53.6	24	7	29.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.661749236	3	2	2	0	1	0.338250764	1	2	NA	1	NA	0.661749236	NA	2.494418149	1.247209075	2	2.853403509	1.426701754	2	NA	NA	0	NA	NA	1	4	NA	1	1	1.07E-27	1	2.51E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	3938145	C	A	SDK1	CCDS34590.1	r.?	-	-	intronic	46	0	0	59	10	16.9	47	4	8.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7	4.260310284	4	2	3	2	1	0.739689716	NA	3	NA	2	NA	0.260310284	1.519650699	1.519650699	1	0.937740409	0.937740409	1	NA	NA	1	NA	NA	0	4	NA	1	1	4.91E-13	1	0.0000939	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	3964762	A	G	-	-	-	-	-	-	47	0	0	69	7	10.1	37	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	6	4.32434803	5	2	1	2	1	0.67565197	NA	3	NA	2	NA	0.32434803	0.807193613	0.807193613	1	0	NA	0	NA	NA	0	NA	NA	0	NA	NA	1	1	6.43E-08	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	3970008	G	A	-	-	-	-	-	-	47	0	0	42	12	28.6	29	1	3.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	3	2	3	0	0	1	1	NA	NA	NA	NA	NA	NA	1.141716567	1.141716567	1	0.332245614	0.332245614	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.35E-18	1	0.135292269	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	3985223	G	C	EEF2	CCDS12117.1	r.?	-	-	intronic	13	0	0	26	7	26.9	13	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5.428592363	5.384331439	3	3	2	2	0.571407637	0.615668561	4	4	2	2	0.428592363	0.384331439	1.996143641	0.998071821	2	0	0	1	NA	NA	0	NA	NA	0	4	NA	1	1	4.73E-11	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	4131640	T	C	-	-	-	-	-	-	44	0	0	42	4	9.5	29	1	3.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.661749236	3	2	2	0	1	0.338250764	1	2	NA	1	NA	0.661749236	NA	0.442107694	0.668089467	0.661749236	0.332245614	0.332245614	1	NA	NA	0	NA	NA	1	4	NA	1	1	0.0000601	1	0.135292269	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	83595268	C	T	-	-	-	-	-	-	55	0	0	43	18	41.9	30	8	26.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	2.091654691	1.045827345	2	3.143105263	1.047701754	3	NA	NA	0	NA	NA	1	4	NA	1	1	2.06E-30	1	2.07E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	4135789	G	A	SMOX	CCDS13075.1	r.?	-	-	intronic	24	0	0	25	7	28	11	3	27.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	4.362325493	2	2	1	2	1	0.637674507	NA	3	NA	2	NA	0.362325493	1.397764471	1.397764471	1	3.039651702	3.039651702	1	NA	NA	0	NA	NA	0	4	NA	1	1	3.47E-11	1	0.00002	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	4199208	T	A	-	-	-	-	-	-	45	0	0	54	19	35.2	48	7	14.6	156	0	0	339	139	41	217	22	10.1	1.15E-15	TRUE	TRUE	6	4.32434803	5	2	1	2	1	0.67565197	NA	3	NA	2	NA	0.32434803	2.813189621	0.937729874	3	1.620056567	1.620056567	1	3.276726547	1.092242182	3	1.120724063	1.120724063	1	4	3	1	1	2.97E-30	1.05E-222	4.81E-09	6.99E-22	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	X	4199214	C	T	-	-	-	-	-	-	46	0	0	55	21	38.2	46	5	10.9	152	0	0	334	135	40.4	219	22	10	1.39E-15	TRUE	TRUE	6	4.32434803	5	2	1	2	1	0.67565197	NA	3	NA	2	NA	0.32434803	3.0529501	1.017650033	3	1.209494286	1.209494286	1	3.228774451	1.07625815	3	1.109627785	1.109627785	1	4	3	1	1	3.41E-34	2.78E-215	0.00000361	8.56E-22	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	X	4223714	C	T	-	-	-	-	-	-	46	0	0	52	28	53.8	40	8	20	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	4.32434803	5	2	1	2	1	0.67565197	NA	3	NA	2	NA	0.32434803	4.299704591	1.074926148	4	2.219255571	0.954786264	2.32434803	NA	NA	0	NA	NA	0	4	NA	1	1	1.41E-50	1	2.61E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	4270108	C	T	SRL	CCDS42113.1	r.?	-	-	intronic	19	0	0	35	14	40	35	9	25.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	5.626372055	2	3	2	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	2.396806387	1.198403194	2	3.186363583	1.062121194	3	NA	NA	0	NA	NA	0	4	NA	1	1	1.28E-23	1	1.23E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	4274519	C	T	-	-	-	-	-	-	35	0	0	33	18	54.5	21	6	28.6	0	0	NA	2	2	100	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	2.720648703	1.360324351	2	2.79477193	1.397385965	2	4.992015968	2.496007984	2	NA	NA	1	4	NA	1	1	3.68E-33	0.000025	7.95E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	4362983	G	A	-	-	-	-	-	-	46	0	0	49	18	36.7	41	5	12.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	4	4	0	0	1	1	NA	NA	NA	NA	NA	NA	2.19906986	1.09953493	2	1.314175439	1.314175439	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.80E-29	1	0.00000202	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	4367713	G	A	-	-	-	-	-	-	28	0	0	23	14	60.9	33	12	36.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	3	2	3	0	0	1	1	NA	NA	NA	NA	NA	NA	2.431137725	1.215568862	2	3.556982456	1.185660819	3	NA	NA	0	NA	NA	1	4	NA	1	1	4.78E-27	1	7.86E-20	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	4375093	G	A	-	-	-	-	-	-	48	0	0	40	15	37.5	28	7	25	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.872005988	0.936002994	2	2.442982456	1.221491228	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.09E-24	1	8.44E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	4380082	C	T	-	-	-	-	-	-	65	0	0	42	6	14.3	26	4	15.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.713858283	0.713858283	1	1.504877193	1.504877193	1	NA	NA	1	NA	NA	1	4	NA	1	1	7.02E-08	1	0.00000856	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	4397954	G	A	-	-	-	-	-	-	36	0	0	49	6	12.2	23	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	6	4.32434803	5	2	1	2	1	0.67565197	NA	3	NA	2	NA	0.32434803	0.975025948	0.975025948	1	0	NA	0	NA	NA	0	NA	NA	0	NA	NA	1	1	0.000000182	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	4431557	C	T	SUMF1	CCDS2564.1	r.?	-	-	intronic	42	0	0	42	13	31	37	8	21.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.37044448	5	2	3	1	2	0.62955552	1	2	NA	2	NA	0.37044448	NA	1.662362739	1.020132618	1.62955552	2.542736842	0.847578947	3	NA	NA	0	NA	NA	1	4	NA	1	1	2.72E-20	1	1.33E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	4444045	C	T	STX18	CCDS3377.1	r.?	-	-	intronic	29	0	0	39	6	15.4	35	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.661749236	3	2	2	0	1	0.338250764	1	2	NA	1	NA	0.661749236	NA	0.716679841	0.716679841	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	4.43E-08	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	4454675	T	C	-	-	-	-	-	-	61	0	0	68	21	30.9	44	6	13.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	4.32434803	5	2	1	2	1	0.67565197	NA	3	NA	2	NA	0.32434803	2.469532934	0.823177645	3	1.509093788	1.509093788	1	NA	NA	0	NA	NA	0	4	NA	1	1	7.15E-32	1	9.37E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	96166726	G	T	-	-	-	-	-	-	52	0	0	45	19	42.2	38	8	21.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	2.106630739	1.053315369	2	2.483877193	0.827959064	3	NA	NA	0	NA	NA	1	4	NA	1	1	4.11E-32	1	1.67E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	4533135	C	A	PLIN5	CCDS42473.1	r.?	-	-	intronic	19	0	0	32	9	28.1	15	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5.428592363	5.384331439	3	3	2	2	0.571407637	0.615668561	4	4	2	2	0.428592363	0.384331439	2.085190941	1.042595471	2	0	0	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.94E-14	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	4540793	T	C	SEMA6B	CCDS12131.1	r.?	-	-	downstream	36	0	0	33	13	39.4	39	9	23.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5.428592363	5.384331439	3	3	2	2	0.571407637	0.615668561	4	4	2	2	0.428592363	0.384331439	2.923719682	0.974573227	3	2.808096352	0.936032117	3	NA	NA	1	NA	NA	0	4	NA	1	1	6.37E-22	1	3.62E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	4586643	G	T	-	-	-	-	-	-	57	0	0	46	11	23.9	22	2	9.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.193091816	1.193091816	1	0.889245614	0.889245614	1	NA	NA	1	NA	NA	1	4	NA	1	1	5.55E-16	1	0.005403392	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	4591170	G	C	-	-	-	-	-	-	26	0	0	45	9	20	30	3	10	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	0.998403194	0.998403194	1	1.177192982	1.177192982	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.47E-12	1	0.000458697	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	4606548	C	T	ITPR1	CCDS46740.1	r.?	-	-	intronic	58	0	0	42	15	35.7	34	3	8.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.37044448	5	2	3	1	2	0.62955552	1	2	NA	2	NA	0.37044448	NA	1.91439838	0.95719919	2	1.035929825	1.035929825	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.65E-24	1	0.000666058	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	4613372	C	A	-	-	-	-	-	-	48	0	0	63	4	6.3	45	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	6	4.32434803	5	2	1	2	1	0.67565197	NA	3	NA	2	NA	0.32434803	0.503497006	0.503497006	1	0	NA	0	NA	NA	0	NA	NA	0	NA	NA	1	1	0.000294233	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	98300254	G	A	DPYD	CCDS30777.1	r.?	-	-	intronic	51	0	0	35	8	22.9	27	5	18.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.143171657	1.143171657	1	2.177807018	2.177807018	1	NA	NA	0	NA	NA	1	4	NA	1	1	8.15E-12	1	0.00000023	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	4690453	C	T	DPP9	CCDS45928.1	r.?	-	-	intronic	14	0	0	38	10	26.3	14	3	21.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5.428592363	5.384331439	3	3	2	2	0.571407637	0.615668561	4	4	2	2	0.428592363	0.384331439	1.951619991	0.975809996	2	2.60143991	2.60143991	1	NA	NA	1	NA	NA	0	4	NA	1	1	4.06E-15	1	0.0000437	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	4742462	A	G	ENSG00000224867	ENST00000416839	r.?	-	-	intronic	33	0	0	33	17	51.5	24	5	20.8	2	0	0	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.055888224	1.027944112	2	1.824561404	1.824561404	1	NA	NA	1	NA	NA	1	4	NA	1	1	8.25E-31	1	0.000000123	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	4772519	T	G	-	-	-	-	-	-	24	0	0	44	17	38.6	29	3	10.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	4	4	0	0	1	1	NA	NA	NA	NA	NA	NA	2.312918164	1.156459082	2	1.109508772	1.109508772	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.61E-28	1	0.000414371	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	4785450	T	A	MMP26	CCDS7752.1	r.?	-	-	upstream	46	0	0	41	6	14.6	20	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.728834331	0.728834331	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	6.05E-08	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	100480505	G	T	SLC35A3	CCDS762.1	r.?	-	-	intronic	24	0	0	37	15	40.5	36	4	11.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	2.021766467	1.010883234	2	1.306684211	1.306684211	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.58E-25	1	0.0000324	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	4895128	C	T	ARRDC5	CCDS45929.1	r.?	-	-	intronic	41	0	0	31	5	16.1	39	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5.428592363	5.384331439	3	3	2	2	0.571407637	0.615668561	4	4	2	2	0.428592363	0.384331439	1.194717941	1.194717941	1	0	0	1	NA	NA	1	NA	NA	0	3	NA	1	1	0.000000476	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	4905024	G	A	UBN1	CCDS10525.1	r.?	-	-	intronic	27	0	0	44	16	36.4	30	7	23.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	5.626372055	2	3	2	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	2.181093812	1.090546906	2	2.888804338	0.962934779	3	NA	NA	0	NA	NA	1	4	NA	1	1	5.57E-26	1	1.44E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	4911978	A	T	ENSG00000224867	ENST00000416839	r.?	-	-	intronic	46	0	0	27	16	59.3	31	4	12.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.367265469	1.183632735	2	1.131578947	1.131578947	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.89E-30	1	0.0000177	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	4950002	T	G	-	-	-	-	-	-	60	0	0	36	7	19.4	22	1	4.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1	2.620991218	1	2	0	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0.580451098	0.580451098	1	0.422681447	0.422681447	1	NA	NA	0	NA	NA	1	4	NA	1	1	5.74E-10	1	0.104413009	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	4950393	G	C	MMD2	CCDS47529.1	r.?	-	-	intronic	16	0	0	44	10	22.7	19	4	21.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7	4.260310284	4	2	3	2	1	0.739689716	NA	3	NA	2	NA	0.260310284	2.041187625	1.020593812	2	2.327802663	2.327802663	1	NA	NA	1	NA	NA	0	4	NA	1	1	2.08E-14	1	0.00000228	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	110170415	C	T	AMPD2	CCDS805.1	r.1492c>u	c.1132C>T	p.R378W	missense	22	0	0	35	15	42.9	22	4	18.2	205	1	0.5	22	7	31.8	17	2	11.8	0.012308986	TRUE	TRUE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	2.14157485	1.070787425	2	2.142491228	2.142491228	1	1.587461078	1.587461078	1	1.389087719	1.389087719	1	4	3	1	0.642124842	9.02E-26	1.25E-11	0.00000425	0.003234386	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	4989988	T	C	-	-	-	-	-	-	39	0	0	25	13	52	30	4	13.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.661749236	3	2	2	0	1	0.338250764	1	2	NA	1	NA	0.661749236	NA	2.419957906	1.209978953	2	1.299666667	1.299666667	1	NA	NA	0	NA	NA	1	4	NA	1	1	6.00E-24	1	0.0000154	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	5033834	A	G	-	-	-	-	-	-	51	0	0	19	4	21.1	23	4	17.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1	2.620991218	1	2	0	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0.631315369	0.631315369	1	1.634368261	1.634368261	1	NA	NA	0	NA	NA	0	4	NA	1	1	0.00000228	1	0.00000513	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	5038601	G	A	KDM4B	CCDS12138.1	r.?	-	-	intronic	13	0	0	43	11	25.6	20	0	0	2	0	0	0	0	NA	0	0	NA	1	TRUE	FALSE	5.428592363	5.384331439	3	3	2	2	0.571407637	0.615668561	4	4	2	2	0.428592363	0.384331439	1.899675733	0.949837866	2	0	0	1	NA	NA	1	NA	NA	0	4	NA	1	1	2.42E-16	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	5091257	T	A	-	-	-	-	-	-	33	0	0	26	8	30.8	26	5	19.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.537540918	1.537540918	1	1.876210526	1.876210526	1	NA	NA	1	NA	NA	1	4	NA	1	1	5.63E-13	1	0.000000188	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	5172178	C	A	-	-	-	-	-	-	27	0	0	27	11	40.7	31	6	19.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5.428592363	5.384331439	3	3	2	2	0.571407637	0.615668561	4	4	2	2	0.428592363	0.384331439	3.020187591	1.006729197	3	2.358314685	0.989088449	2.384331439	NA	NA	1	NA	NA	0	4	NA	1	1	5.92E-19	1	1.03E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	5189749	A	G	OR52A1	CCDS31374.1	r.?	-	-	intronic	56	0	0	43	9	20.9	37	1	2.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.043331337	1.043331337	1	0.263842105	0.263842105	1	NA	NA	1	NA	NA	1	4	NA	1	1	9.45E-13	1	0.169281299	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	145598049	C	A	POLR3C	CCDS921.1	r.?	-	-	intronic	54	0	0	55	20	36.4	45	8	17.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.817093812	0.908546906	2	2.095403509	1.047701754	2	NA	NA	0	NA	NA	1	4	NA	1	1	4.08E-32	1	7.14E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	5239797	A	T	ADAMTS16	CCDS43299.1	r.2420a>u	c.2282A>T	p.Y761F	missense	40	0	0	29	7	24.1	27	0	0	252	0	0	127	8	6.3	155	0	0	1	TRUE	TRUE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.962075848	0.962075848	1	0	0	1	0.251497006	0.251497006	1	0	0	1	3	2	1	1	1.11E-10	0.000000309	1	1	YES	1_1	0_0	somatic	custom.pulldown.HiSeq
PD9852b	20	5242915	A	T	-	-	-	-	-	-	40	0	0	47	4	8.5	38	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	4.362325493	2	2	1	2	1	0.637674507	NA	3	NA	2	NA	0.362325493	0.424321357	0.424321357	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	0.0000939	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	5252805	A	G	HBD	CCDS31376.1	r.?	-	-	downstream	46	0	0	46	24	52.2	30	7	23.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	2.605832335	1.302916168	2	2.276859649	1.138429825	2	NA	NA	1	NA	NA	1	4	NA	1	1	4.23E-43	1	1.44E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	5253261	G	A	-	-	-	-	-	-	58	0	0	47	12	25.5	32	1	3.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.272964072	1.272964072	1	0.364929825	0.364929825	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.09E-17	1	0.14819814	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	148513124	G	A	-	-	-	-	-	-	76	0	0	80	8	10	57	4	7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.599201597	0.599201597	1	0.754035088	0.754035088	1	NA	NA	1	NA	NA	1	4	NA	1	1	8.22E-09	1	0.000199821	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	5307388	C	G	-	-	-	-	-	-	45	0	0	61	7	11.5	33	0	0	117	0	0	172	7	4.1	120	0	0	1	FALSE	FALSE	6	4.32434803	5	2	1	2	1	0.67565197	NA	3	NA	2	NA	0.32434803	0.919081836	0.919081836	1	0	NA	0	0.327672655	0.327672655	1	0	NA	0	NA	NA	1	1	2.69E-08	0.0000297	1	1	YES	1_1	0_0	somatic	custom.pulldown.HiSeq
PD9852b	12	5337542	C	T	-	-	-	-	-	-	44	0	0	45	20	44.4	28	9	32.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	2.21645509	1.108227545	2	3.136789474	1.568394737	2	NA	NA	1	NA	NA	1	4	NA	1	1	2.68E-34	1	1.24E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	5370091	C	T	-	-	-	-	-	-	67	0	0	37	5	13.5	26	2	7.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	4.362325493	2	2	1	2	1	0.637674507	NA	3	NA	2	NA	0.362325493	0.673922156	0.673922156	1	0.857337659	0.857337659	1	NA	NA	0	NA	NA	0	4	NA	1	1	0.00000119	1	0.007502227	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	154811466	C	A	KCNN3	CCDS30880.1	r.?	-	-	intronic	31	0	0	43	12	27.9	32	7	21.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.671772455	0.835886228	2	2.359052632	1.179526316	2	NA	NA	1	NA	NA	1	4	NA	1	1	3.24E-18	1	2.36E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	5452959	C	G	TNRC18	CCDS47534.1	r.?	-	-	intronic	20	0	0	40	16	40	28	3	10.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7	4.260310284	4	2	3	2	1	0.739689716	NA	3	NA	2	NA	0.260310284	3.596806387	0.899201597	4	1.180449692	1.180449692	1	NA	NA	1	NA	NA	0	4	NA	1	1	8.56E-27	1	0.000372895	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	5492011	T	C	-	-	-	-	-	-	43	0	0	32	9	28.1	21	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1	1	1	1	0	0	1	1	NA	NA	NA	NA	NA	NA	0.840756487	0.840756487	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	4.94E-14	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	5492921	C	A	-	-	-	-	-	-	35	0	0	23	5	21.7	23	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1	2.620991218	1	2	0	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0.649267465	0.649267465	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	9.75E-08	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	5515874	G	A	-	-	-	-	-	-	36	0	0	44	17	38.6	28	6	21.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5.428592363	5.384331439	3	3	2	2	0.571407637	0.615668561	4	4	2	2	0.428592363	0.384331439	2.864354816	0.954784939	3	2.60143991	1.091056331	2.384331439	NA	NA	0	NA	NA	0	4	NA	1	1	4.61E-28	1	5.36E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	5519650	T	C	-	-	-	-	-	-	41	0	0	49	8	16.3	29	1	3.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	5.626372055	2	3	2	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	0.976698603	0.976698603	1	0.421542264	0.421542264	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.47E-10	1	0.135292269	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	5558942	G	A	-	-	-	-	-	-	51	0	0	48	15	31.2	30	9	30	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	4	4	0	0	1	1	NA	NA	NA	NA	NA	NA	1.869508982	0.934754491	2	3.231578947	1.077192982	3	NA	NA	1	NA	NA	1	4	NA	1	1	2.86E-23	1	2.54E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	157839413	G	T	-	-	-	-	-	-	46	0	0	51	24	47.1	32	5	15.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.822239521	1.41111976	2	1.680421053	1.680421053	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.20E-41	1	0.000000562	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	5576058	C	G	-	-	-	-	-	-	49	0	0	48	4	8.3	35	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	0.414337325	0.414337325	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	0.000102016	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	5651272	C	T	-	-	-	-	-	-	48	0	0	97	11	11.3	43	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	6	4.32434803	5	2	1	2	1	0.67565197	NA	3	NA	2	NA	0.32434803	0.903097804	0.903097804	1	0	NA	0	NA	NA	0	NA	NA	0	NA	NA	1	1	3.27E-12	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	5659736	C	T	-	-	-	-	-	-	48	0	0	65	23	35.4	31	2	6.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	4.32434803	5	2	1	2	1	0.67565197	NA	3	NA	2	NA	0.32434803	2.829173653	0.943057884	3	0.721258061	0.721258061	1	NA	NA	0	NA	NA	0	4	NA	1	1	2.21E-36	1	0.010558179	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	5671309	G	A	-	-	-	-	-	-	52	0	0	40	9	22.5	38	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.123203593	1.123203593	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	4.64E-13	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	5681738	G	A	-	-	-	-	-	-	49	0	0	28	8	28.6	35	1	2.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.141716567	1.141716567	1	0.254385965	0.254385965	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.11E-12	1	0.16091139	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	5705637	G	C	EVC2	CCDS3382.2	r.?	-	-	intronic	40	0	0	43	18	41.9	27	6	22.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.661749236	3	2	2	0	1	0.338250764	1	2	NA	1	NA	0.661749236	NA	1.94992762	0.97496381	2	2.169368421	1.084684211	2	NA	NA	0	NA	NA	1	4	NA	1	1	2.06E-30	1	4.23E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	5795512	G	T	-	-	-	-	-	-	40	0	0	24	7	29.2	27	3	11.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.165668663	1.165668663	1	0.973684211	0.973684211	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.51E-11	1	0.000334187	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	17	5849577	G	T	-	-	-	-	-	-	44	1	2.3	33	16	48.5	32	8	25	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	3.601202326	2	3	0	0	1	0.398797674	NA	3	NA	1	NA	0.601202326	1.936127745	0.968063872	2	2.593283038	1.081076185	2.398797674	NA	NA	0	NA	NA	0	4	NA	0.197923942	1	1.64E-28	1	3.69E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	5879722	C	A	-	-	-	-	-	-	29	0	0	55	25	45.5	29	4	13.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7	4.260310284	4	2	3	2	1	0.739689716	NA	3	NA	2	NA	0.260310284	4.091367265	1.022841816	4	1.522449135	1.522449135	1	NA	NA	1	NA	NA	0	4	NA	1	1	7.96E-43	1	0.0000134	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	5927869	G	A	NPHP4	CCDS44052.1	r.3669c>u	c.3403C>T	p.R1135C	missense	20	0	0	37	5	13.5	19	2	10.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	0.673922156	0.673922156	1	1.236052632	1.236052632	1	NA	NA	0	NA	NA	1	4	NA	1	1	0.00000119	1	0.004039874	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	5936237	G	A	AL136307.1	ENST00000510466	r.?	-	-	intronic	37	0	0	48	6	12.5	34	1	2.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.236173977	5.609750478	2	3	2	2	0.763826023	0.390249522	3	3	2	3	0.236173977	0.609750478	0.778523743	0.778523743	1	0.359068729	0.359068729	1	NA	NA	0	NA	NA	0	4	NA	1	1	0.00000016	1	0.156694864	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	5939500	A	T	FBXO18	CCDS7073.1	r.?	-	-	intronic	52	0	0	58	17	29.3	43	9	20.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.169660679	1.169660679	1	1.833333333	0.916666667	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.24E-25	1	9.45E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	5947561	T	C	-	-	-	-	-	-	58	0	0	21	8	38.1	25	6	24	0	0	NA	2	2	100	0	0	NA	1	TRUE	FALSE	1	2.620991218	1	2	0	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.139958084	1.139958084	1	2.25430105	1.127150525	2	2.992015968	2.992015968	1	NA	NA	1	4	NA	1	1	7.50E-14	0.000025	2.55E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	17	5995432	C	T	WSCD1	CCDS32538.1	r.?	-	-	intronic	13	0	0	28	5	17.9	9	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	3.601202326	2	3	0	0	1	0.398797674	NA	3	NA	1	NA	0.601202326	0.714570858	0.714570858	1	0	0	1	NA	NA	0	NA	NA	0	4	NA	1	1	0.000000279	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	168412149	A	G	-	-	-	-	-	-	56	0	0	41	5	12.2	36	3	8.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.731025948	0.731025948	1	0.894070175	0.894070175	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.00000202	1	0.000788827	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	6106078	C	T	-	-	-	-	-	-	53	1	1.9	55	22	40	38	7	18.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	4	4	0	0	1	1	NA	NA	NA	NA	NA	NA	2.396806387	1.198403194	2	1.982035088	0.991017544	2	NA	NA	1	NA	NA	1	4	NA	0.233303855	1	2.65E-36	1	8.61E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	6174464	A	G	ACSBG2	CCDS12159.1	r.?	-	-	intronic	36	0	0	33	6	18.2	32	4	12.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5.428592363	5.384331439	3	3	2	2	0.571407637	0.615668561	4	4	2	2	0.428592363	0.384331439	1.350550716	1.350550716	1	1.519532658	1.519532658	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.54E-08	1	0.0000201	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	6185817	A	G	-	-	-	-	-	-	44	0	0	28	12	42.9	22	5	22.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1	1	1	1	0	0	1	1	NA	NA	NA	NA	NA	NA	1.28357485	1.28357485	1	1.76422807	1.76422807	1	NA	NA	1	NA	NA	1	4	NA	1	1	6.90E-21	1	7.67E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	6189957	C	T	-	-	-	-	-	-	45	0	0	48	13	27.1	38	8	21.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	5.626372055	2	3	2	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	1.623836327	0.811918164	2	2.616041697	1.102127948	2.373627945	NA	NA	0	NA	NA	0	4	NA	1	1	2.00E-19	1	1.67E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	6215469	G	A	-	-	-	-	-	-	52	0	0	61	9	14.8	35	3	8.6	169	0	0	307	23	7.5	260	30	11.5	1.99E-22	TRUE	TRUE	4	5.626372055	2	3	2	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	0.886818363	0.886818363	1	1.066253962	1.066253962	1	0.449401198	0.449401198	1	1.425804716	1.037984646	1.373627945	4	1	1	1	2.68E-11	8.12E-20	0.000725791	5.68E-31	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	10	6227019	C	T	PFKFB3	CCDS44353.1	r.?	-	-	intronic	37	0	0	29	6	20.7	28	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.826347305	0.826347305	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	6.72E-09	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	6235484	A	T	CYTH3	CCDS5346.1	r.?	-	-	intronic	60	0	0	67	27	40.3	47	8	17	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7	4.260310284	4	2	3	2	1	0.739689716	NA	3	NA	2	NA	0.260310284	3.623782435	0.905945609	4	1.875480818	1.875480818	1	NA	NA	1	NA	NA	0	4	NA	1	1	2.52E-44	1	1.03E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	169030875	G	T	-	-	-	-	-	-	40	0	0	50	5	10	44	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.599201597	0.599201597	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.00000549	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	6261030	A	C	MLLT1	CCDS12160.1	r.?	-	-	intronic	18	0	0	26	4	15.4	10	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5.428592363	5.384331439	3	3	2	2	0.571407637	0.615668561	4	4	2	2	0.428592363	0.384331439	1.142773683	1.142773683	1	0	0	1	NA	NA	1	NA	NA	0	4	NA	1	1	0.00000856	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	6357623	G	T	-	-	-	-	-	-	41	0	0	46	11	23.9	30	4	13.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.37044448	5	2	3	1	2	0.62955552	1	2	NA	2	NA	0.37044448	NA	1.281628047	1.281628047	1	1.565666667	1.565666667	1	NA	NA	0	NA	NA	1	4	NA	1	1	5.55E-16	1	0.0000154	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	6362030	T	A	-	-	-	-	-	-	61	0	0	72	4	5.6	39	1	2.6	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	7	4.32434803	4	2	3	2	1	0.67565197	NA	3	NA	2	NA	0.32434803	0.503552894	0.503552894	1	0.288503224	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	0.000490365	1	0.177567718	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	6397350	T	C	-	-	-	-	-	-	54	0	0	49	23	46.9	32	7	21.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	5.626372055	2	3	2	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	2.810255489	1.405127745	2	2.715228112	0.905076037	3	NA	NA	0	NA	NA	0	4	NA	1	1	6.14E-40	1	2.36E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	6408349	A	G	MCPH1	CCDS43689.1	r.?	-	-	intronic	21	0	0	31	12	38.7	19	4	21.1	291	0	0	145	38	26.2	137	21	15.3	9.52E-19	TRUE	TRUE	1	2.620991218	1	2	0	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.15791018	1.15791018	1	1.98190634	1.98190634	1	0.783908184	0.783908184	1	1.437116919	1.437116919	1	4	3	1	1	3.16E-20	2.71E-53	0.00000228	7.92E-25	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	1	6476707	A	G	HES2	CCDS30574.1	r.2847u>c	c.?	p.?	3'UTR variant	19	0	0	36	9	25	26	1	3.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.248003992	1.248003992	1	0.447333333	0.447333333	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.63E-13	1	0.122190858	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	171581831	G	A	-	-	-	-	-	-	30	0	0	38	8	21.1	27	4	14.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.264315369	1.264315369	1	1.594245614	1.594245614	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.67E-11	1	0.00001	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	6528089	G	A	TNFSF9	CCDS12169.1	r.?	-	-	upstream	44	0	0	32	11	34.4	24	9	37.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5.428592363	5.384331439	3	3	2	2	0.571407637	0.615668561	4	4	2	2	0.428592363	0.384331439	2.552689266	1.051098284	2.428592363	4.558597974	1.346971494	3.384331439	NA	NA	1	NA	NA	1	4	NA	1	1	5.72E-18	1	2.39E-15	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	176499286	G	T	PAPPA2	CCDS41438.1	r.?	-	-	intronic	41	0	0	42	16	38.1	47	7	14.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.282958084	1.141479042	2	1.605017544	1.605017544	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.25E-26	1	4.12E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	6592560	T	A	-	-	-	-	-	-	56	0	0	59	6	10.2	48	8	16.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7	4.32434803	4	2	3	2	1	0.67565197	NA	3	NA	2	NA	0.32434803	0.917185629	0.917185629	1	1.853078402	1.853078402	1	NA	NA	1	NA	NA	0	4	NA	1	1	0.000000561	1	1.23E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	6624121	T	A	-	-	-	-	-	-	48	0	0	46	10	21.7	40	4	10	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	4.362325493	2	2	1	2	1	0.637674507	NA	3	NA	2	NA	0.362325493	1.083267465	1.083267465	1	1.113425532	1.113425532	1	NA	NA	0	NA	NA	0	4	NA	1	1	3.38E-14	1	0.0000495	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	6628684	G	T	-	-	-	-	-	-	59	0	0	74	9	12.2	46	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	7	4.32434803	4	2	3	2	1	0.67565197	NA	3	NA	2	NA	0.32434803	1.097025948	1.097025948	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	1.61E-10	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	6634968	G	T	-	-	-	-	-	-	46	0	0	57	21	36.8	38	8	21.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	5.626372055	2	3	2	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	2.205061876	1.102530938	2	2.616041697	1.102127948	2.373627945	NA	NA	0	NA	NA	0	4	NA	1	1	8.56E-34	1	1.67E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	6652522	C	T	-	-	-	-	-	-	49	0	0	41	12	29.3	29	3	10.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5.428592363	5.384331439	3	3	2	2	0.571407637	0.615668561	4	4	2	2	0.428592363	0.384331439	2.174238241	1.087119121	2	1.25209491	1.25209491	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.69E-18	1	0.000414371	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	6661016	T	C	-	-	-	-	-	-	43	0	0	59	17	28.8	16	3	18.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.37044448	5	2	3	1	2	0.62955552	1	2	NA	2	NA	0.37044448	NA	1.544388609	0.94773611	1.62955552	2.213122807	2.213122807	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.74E-25	1	0.0000667	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	176834451	C	A	ASTN1	CCDS1319.1	r.?	-	-	intronic	49	0	0	53	14	26.4	49	6	12.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.581892216	0.790946108	2	1.314175439	1.314175439	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.22E-20	1	0.000000182	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	6696374	G	A	-	-	-	-	-	-	14	0	0	58	15	25.9	13	1	7.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7	4.260310284	4	2	3	2	1	0.739689716	NA	3	NA	2	NA	0.260310284	2.328932136	1.164466068	2	0.849482488	0.849482488	1	NA	NA	1	NA	NA	0	4	NA	1	1	7.42E-22	1	0.063085307	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	177713867	C	A	-	-	-	-	-	-	41	0	0	45	4	8.9	35	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.533289421	0.533289421	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.0000791	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	181627833	C	A	CACNA1E	ENST00000367573	r.?	-	-	intronic	38	0	0	41	12	29.3	36	9	25	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.755660679	0.877830339	2	2.692982456	1.346491228	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.69E-18	1	1.63E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	6727027	G	A	ZNF12	CCDS47538.1	r.?	-	-	downstream	16	0	0	32	7	21.9	16	0	0	1	0	0	1	0	0	2	0	0	1	FALSE	FALSE	7	4.260310284	4	2	3	2	1	0.739689716	NA	3	NA	2	NA	0.260310284	1.969251497	0.984625749	2	0	NA	0	0	0	1	0	NA	0	NA	NA	1	1	2.36E-10	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	6754981	T	C	-	-	-	-	-	-	61	0	0	62	42	67.7	52	11	21.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6.732316688	4.32434803	5	2	1	2	0.267683312	0.67565197	5	3	2	2	0.732316688	0.32434803	5.906373208	1.181274642	5	2.352410905	1.012073439	2.32434803	NA	NA	0	NA	NA	0	4	NA	1	1	1.90E-81	1	2.44E-15	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	6786025	A	G	OR2AG2	CCDS31413.1	r.?	-	-	downstream	48	0	0	36	21	58.3	39	9	23.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	2.910345309	1.455172655	2	2.257315789	1.128657895	2	NA	NA	1	NA	NA	1	4	NA	1	1	2.47E-39	1	3.62E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	183519685	G	A	SMG7	CCDS1355.1	r.?	-	-	intronic	53	0	0	42	18	42.9	44	11	25	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.57057485	1.285287425	2	2.692982456	1.346491228	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.20E-30	1	3.22E-16	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	6811971	C	G	VAV1	CCDS12174.1	r.?	-	-	intronic	38	0	0	33	12	36.4	28	2	7.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5.428592363	5.384331439	3	3	2	2	0.571407637	0.615668561	4	4	2	2	0.428592363	0.384331439	2.701101433	0.900367144	3	0.86309455	0.86309455	1	NA	NA	1	NA	NA	0	4	NA	1	1	7.86E-20	1	0.008668191	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	6850039	C	A	GRM7	ENST00000448328	r.?	-	-	intronic	42	0	0	46	15	32.6	32	4	12.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.37044448	5	2	3	1	2	0.62955552	1	2	NA	2	NA	0.37044448	NA	1.748162106	1.072784624	1.62955552	1.471491228	1.471491228	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.35E-23	1	0.0000201	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	6862326	T	G	KIAA0232	CCDS43209.1	r.?	-	-	intronic	47	0	0	40	8	20	34	5	14.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.661749236	3	2	2	0	1	0.338250764	1	2	NA	1	NA	0.661749236	NA	0.930753041	0.930753041	1	1.436473684	1.436473684	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.61E-11	1	0.000000771	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	6862925	G	A	-	-	-	-	-	-	41	0	0	38	10	26.3	26	5	19.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.0499002	1.0499002	1	1.684210526	1.684210526	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.06E-15	1	0.000000188	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	6880095	C	A	-	-	-	-	-	-	37	0	0	44	4	9.1	31	6	19.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.236173977	5.609750478	2	3	2	2	0.763826023	0.390249522	3	3	2	3	0.236173977	0.609750478	0.566765285	0.566765285	1	2.402045979	1.004935241	2.390249522	NA	NA	0	NA	NA	1	4	NA	1	1	0.0000723	1	1.03E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	6902572	C	T	-	-	-	-	-	-	47	0	0	79	8	10.1	51	1	2	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	6.732316688	4.32434803	5	2	1	2	0.267683312	0.67565197	5	3	2	2	0.732316688	0.32434803	0.881157598	0.881157598	1	0.221925557	NA	0	NA	NA	0	NA	NA	0	NA	NA	1	1	7.43E-09	1	0.225579006	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	6948618	G	A	-	-	-	-	-	-	29	0	0	51	20	39.2	23	3	13	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7	4.260310284	4	2	3	2	1	0.739689716	NA	3	NA	2	NA	0.260310284	3.524870259	0.881217565	4	1.434191214	1.434191214	1	NA	NA	1	NA	NA	0	4	NA	1	1	6.38E-33	1	0.000205387	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	6952266	T	G	-	-	-	-	-	-	53	0	0	39	10	25.6	44	12	27.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	5.626372055	2	3	2	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	1.533956088	1.533956088	1	3.384736413	1.128245471	3	NA	NA	0	NA	NA	0	4	NA	1	1	5.44E-15	1	4.44E-18	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	6954898	G	A	GNB3	CCDS8564.1	r.1253g>a	c.848G>A	p.R283H	missense	17	0	0	43	9	20.9	16	0	0	259	0	0	43	9	20.9	53	0	0	1	TRUE	TRUE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.043331337	1.043331337	1	0	0	1	1.043331337	1.043331337	1	0	0	1	4	2	1	1	9.45E-13	9.45E-13	1	1	YES	1_1	0_0	somatic	custom.pulldown.HiSeq
PD9852b	10	6955078	A	C	-	-	-	-	-	-	53	0	0	38	4	10.5	36	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.419161677	0.419161677	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.0000403	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	6975530	C	T	USP5	CCDS41743.1	r.2925c>u	c.?	p.?	3'UTR variant	22	0	0	47	6	12.8	25	2	8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.638978044	0.638978044	1	0.781754386	0.781754386	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.000000141	1	0.006948068	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	190212752	C	A	FAM5C	CCDS1373.1	r.?	-	-	intronic	50	0	0	36	10	27.8	38	7	18.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.665780439	1.665780439	1	1.982035088	0.991017544	2	NA	NA	1	NA	NA	1	4	NA	1	1	2.21E-15	1	8.61E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	6987350	G	T	-	-	-	-	-	-	60	0	0	19	5	26.3	32	1	3.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1	2.620991218	1	2	0	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0.7869002	0.7869002	1	0.291180552	0.291180552	1	NA	NA	0	NA	NA	0	4	NA	1	1	3.43E-08	1	0.14819814	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	6996527	C	A	-	-	-	-	-	-	39	0	0	20	8	40	27	1	3.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1	2.620991218	1	2	0	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.196806387	1.196806387	1	0.347538079	0.347538079	1	NA	NA	0	NA	NA	1	4	NA	1	1	4.66E-14	1	0.126579904	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	7009717	G	T	CAMTA1	CCDS30576.1	r.?	-	-	intronic	29	0	0	33	7	21.2	21	3	14.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.058307385	1.058307385	1	1.683385965	1.683385965	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.98E-10	1	0.000155401	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	191569981	G	T	-	-	-	-	-	-	37	0	0	36	10	27.8	26	3	11.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.665780439	1.665780439	1	1.23877193	1.23877193	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.21E-15	1	0.000298167	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	7090332	G	C	-	-	-	-	-	-	47	0	0	79	13	16.5	36	2	5.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6.732316688	4.32434803	5	2	1	2	0.267683312	0.67565197	5	3	2	2	0.732316688	0.32434803	1.439514888	1.439514888	1	0.62139156	0.62139156	1	NA	NA	0	NA	NA	0	4	NA	1	1	2.37E-16	1	0.014070883	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	7132768	A	T	INSR	CCDS12176.1	r.?	-	-	intronic	13	0	0	35	6	17.1	28	1	3.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5.428592363	5.384331439	3	3	2	2	0.571407637	0.615668561	4	4	2	2	0.428592363	0.384331439	1.268924025	1.268924025	1	0.437625405	0.437625405	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.24E-08	1	0.130947004	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	7134541	C	A	GRM7	CCDS43042.1	r.?	-	-	intronic	47	0	0	49	15	30.6	33	5	15.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.37044448	5	2	3	1	2	0.62955552	1	2	NA	2	NA	0.37044448	NA	1.640912897	1.006969616	1.62955552	1.789333333	1.789333333	1	NA	NA	0	NA	NA	1	4	NA	1	1	4.10E-23	1	0.00000066	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	7153289	G	C	-	-	-	-	-	-	36	0	0	26	10	38.5	27	6	22.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.536926148	1.536926148	1	1.947368421	1.947368421	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.82E-17	1	4.23E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	203851683	T	C	-	-	-	-	-	-	38	0	0	48	18	37.5	35	6	17.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.247005988	1.123502994	2	1.842	1.842	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.42E-29	1	2.24E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	7166486	C	T	CAMTA1	CCDS30576.1	r.?	-	-	intronic	42	0	0	27	11	40.7	27	5	18.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	2.031750499	1.01587525	2	2.177807018	2.177807018	1	NA	NA	0	NA	NA	1	4	NA	1	1	5.92E-19	1	0.00000023	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	7197978	C	A	SFMBT2	CCDS31138.1	r.?	-	-	downstream	57	0	0	39	19	48.7	27	3	11.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.944111776	0.972055888	2	0.973684211	0.973684211	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.20E-33	1	0.000334187	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	7204850	T	G	SORCS2	CCDS47008.1	r.?	-	-	intronic	15	0	0	19	9	47.4	28	5	17.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.661749236	3	2	2	0	1	0.338250764	1	2	NA	1	NA	0.661749236	NA	2.205884707	1.102942353	2	1.749175439	1.749175439	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.72E-16	1	0.000000279	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	7206475	C	T	-	-	-	-	-	-	44	0	0	45	8	17.8	29	7	24.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	4.362325493	2	2	1	2	1	0.637674507	NA	3	NA	2	NA	0.362325493	0.888578842	0.888578842	1	2.683355532	1.135895769	2.362325493	NA	NA	0	NA	NA	0	4	NA	1	1	7.14E-11	1	1.11E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	7237524	T	C	INSR	CCDS12176.1	r.?	-	-	intronic	18	0	0	27	4	14.8	23	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5.428592363	5.384331439	3	3	2	2	0.571407637	0.615668561	4	4	2	2	0.428592363	0.384331439	1.098250033	1.098250033	1	0	0	1	NA	NA	1	NA	NA	0	3	NA	1	1	0.00001	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	7304129	T	A	-	-	-	-	-	-	51	0	0	39	5	12.8	36	5	13.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	4.362325493	2	2	1	2	1	0.637674507	NA	3	NA	2	NA	0.362325493	0.638978044	0.638978044	1	1.547661489	1.547661489	1	NA	NA	0	NA	NA	1	4	NA	1	1	0.00000156	1	0.00000104	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	205757226	G	T	SLC41A1	CCDS30988.1	r.?	-	-	downstream	34	0	0	46	20	43.5	32	8	25	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.606526946	1.303263473	2	2.692982456	1.346491228	2	NA	NA	1	NA	NA	1	4	NA	1	1	4.72E-34	1	3.69E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	7361230	G	A	CAMTA1	CCDS30576.1	r.?	-	-	intronic	40	0	0	38	15	39.5	34	6	17.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.971846307	0.985923154	2	2.071859649	2.071859649	1	NA	NA	0	NA	NA	1	4	NA	1	1	4.24E-25	1	1.86E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	210262795	G	T	SYT14	CCDS31014.1	r.?	-	-	intronic	40	0	0	52	16	30.8	29	5	17.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.845540918	0.922770459	2	1.85277193	1.85277193	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.33E-24	1	0.000000336	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	7432359	G	C	PSAPL1	CCDS47009.1	r.4342c>g	c.?	p.?	3'UTR variant	18	0	0	35	18	51.4	23	6	26.1	162	0	0	11	2	18.2	22	9	40.9	4.42E-13	TRUE	TRUE	2.661749236	3	2	2	0	1	0.338250764	1	2	NA	1	NA	0.661749236	NA	2.392035315	1.196017657	2	2.550473684	1.275236842	2	0.846985267	0.846985267	1	3.996719298	1.998359649	2	4	3	1	1	1.60E-32	0.001334363	1.47E-09	9.16E-16	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	7439430	G	C	-	-	-	-	-	-	55	0	0	84	5	6	41	1	2.4	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	6.732316688	4.32434803	5	2	1	2	0.267683312	0.67565197	5	3	2	2	0.732316688	0.32434803	0.523459959	0.523459959	1	0.266310669	NA	0	NA	NA	0	NA	NA	0	NA	NA	1	1	0.0000695	1	0.18577148	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	7458431	C	T	-	-	-	-	-	-	53	0	0	89	32	36	38	1	2.6	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	6.732316688	4.32434803	5	2	1	2	0.267683312	0.67565197	5	3	2	2	0.732316688	0.32434803	3.140759756	0.961157938	3.267683312	0.288503224	NA	0	NA	NA	0	NA	NA	0	NA	NA	1	1	2.73E-50	1	0.173434892	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	7464488	C	T	-	-	-	-	-	-	44	0	0	63	8	12.7	35	8	22.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6.732316688	4.32434803	5	2	1	2	0.267683312	0.67565197	5	3	2	2	0.732316688	0.32434803	1.107990247	1.107990247	1	2.541047629	1.093230272	2.32434803	NA	NA	0	NA	NA	0	4	NA	1	1	1.18E-09	1	8.15E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	7466013	G	T	ENSG00000078328	CCDS45405.1	r.?	-	-	intronic	54	0	0	36	6	16.7	41	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	5.626372055	2	3	2	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	1.000666667	1.000666667	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	2.68E-08	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	7493338	C	T	COL28A1	CCDS43553.1	r.?	-	-	intronic	50	0	0	50	26	52	38	8	21.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7	4.260310284	4	2	3	2	1	0.739689716	NA	3	NA	2	NA	0.260310284	4.675848303	1.168962076	4	2.327802663	1.029859785	2.260310284	NA	NA	1	NA	NA	0	4	NA	1	1	1.61E-46	1	1.67E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	7545069	G	C	PPFIBP2	CCDS31419.1	r.?	-	-	intronic	48	0	0	34	16	47.1	29	11	37.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	2.351239521	1.17561976	2	3.703561404	1.851780702	2	NA	NA	1	NA	NA	1	4	NA	1	1	3.09E-28	1	1.56E-18	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	17	7578437	G	A	TP53	CCDS11118.1	r.683c>u	c.493C>T	p.Q165*	nonsense	13	0	0	29	14	48.3	15	4	26.7	263	0	0	176	79	44.9	163	27	16.6	1.35E-24	TRUE	TRUE	2	3.601202326	2	3	0	0	1	0.398797674	NA	3	NA	1	NA	0.601202326	1.928143713	0.964071856	2	2.769626284	0.923208761	3	1.79241517	0.896207585	2	1.721939937	0.860969969	2	4	3	1	1	4.41E-25	2.35E-131	0.000000816	1.94E-32	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	1	211199550	G	T	KCNH1	CCDS31015.1	r.?	-	-	intronic	46	0	0	53	15	28.3	32	1	3.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.695740519	0.847870259	2	0.333929825	0.333929825	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.60E-22	1	0.14819814	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	7592465	G	A	SORCS2	CCDS47008.1	r.?	-	-	intronic	31	0	0	34	5	14.7	27	3	11.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.661749236	3	2	2	0	1	0.338250764	1	2	NA	1	NA	0.661749236	NA	0.684103485	0.684103485	1	1.084684211	1.084684211	1	NA	NA	0	NA	NA	1	4	NA	1	1	0.000000771	1	0.000334187	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	7649338	G	T	PTPRM	CCDS11840.1	r.?	-	-	intronic	52	0	0	32	8	25	31	4	12.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	3	2	3	0	0	1	1	NA	NA	NA	NA	NA	NA	0.998003992	0.998003992	1	1.260578947	1.260578947	1	NA	NA	0	NA	NA	1	4	NA	1	1	3.69E-12	1	0.0000177	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	7681569	G	A	-	-	-	-	-	-	32	0	0	28	13	46.4	24	4	16.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	2.316295409	1.158147705	2	1.631912281	1.631912281	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.26E-23	1	0.00000613	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	220780995	C	T	MARK1	CCDS31029.2	r.?	-	-	intronic	41	0	0	48	8	16.7	23	0	0	0	0	NA	0	0	NA	2	0	0	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.000666667	1.000666667	1	0	0	1	NA	NA	1	0	0	1	3	NA	1	1	1.23E-10	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	7723588	T	C	GRM7	CCDS43042.1	r.?	-	-	intronic	39	0	0	57	8	14	32	3	9.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.37044448	5	2	3	1	2	0.62955552	1	2	NA	2	NA	0.37044448	NA	0.750744463	0.750744463	1	1.106561404	1.106561404	1	NA	NA	0	NA	NA	1	4	NA	1	1	5.19E-10	1	0.000556213	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	7733408	A	C	RETN	CCDS12182.1	r.?	-	-	upstream	30	0	0	30	12	40	29	6	20.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5.428592363	5.384331439	3	3	2	2	0.571407637	0.615668561	4	4	2	2	0.428592363	0.384331439	2.968243332	0.989414444	3	2.516346082	1.055367572	2.384331439	NA	NA	1	NA	NA	1	4	NA	1	1	1.94E-20	1	6.72E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	7764484	C	T	ENSG00000219545	ENST00000433511	r.?	-	-	intronic	46	0	0	58	26	44.8	35	6	17.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7	4.260310284	4	2	3	2	1	0.739689716	NA	3	NA	2	NA	0.260310284	4.028423154	1.007105788	4	1.886513059	1.886513059	1	NA	NA	1	NA	NA	0	4	NA	1	1	2.83E-44	1	2.24E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	7867648	C	A	-	-	-	-	-	-	16	0	0	16	8	50	9	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1	1	1	1	0	0	1	1	NA	NA	NA	NA	NA	NA	1.496007984	1.496007984	1	0	0	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.85E-15	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	7923976	C	T	-	-	-	-	-	-	59	0	0	55	6	10.9	38	0	0	0	0	NA	0	0	NA	1	0	0	1	FALSE	FALSE	7	4.260310284	4	2	3	2	1	0.739689716	NA	3	NA	2	NA	0.260310284	0.980129741	0.980129741	1	0	NA	0	NA	NA	1	0	NA	0	NA	NA	1	1	0.000000367	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	222978038	C	A	-	-	-	-	-	-	52	0	0	51	5	9.8	43	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.587217565	0.587217565	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.00000606	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	7930494	C	T	-	-	-	-	-	-	35	0	0	61	9	14.8	40	3	7.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7	4.260310284	4	2	3	2	1	0.739689716	NA	3	NA	2	NA	0.260310284	1.330818363	1.330818363	1	0.827418008	0.827418008	1	NA	NA	1	NA	NA	0	4	NA	1	1	2.68E-11	1	0.001075403	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	8030085	G	A	-	-	-	-	-	-	61	0	0	38	25	65.8	35	9	25.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.626746507	1.313373253	2	2.254385965	1.127192982	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.52E-48	1	1.23E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	8063234	A	T	PTPRM	CCDS11840.1	r.?	-	-	intronic	9	0	0	21	7	33.3	16	2	12.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	3	2	3	0	0	1	1	NA	NA	NA	NA	NA	NA	1.329341317	1.329341317	1	1.221491228	1.221491228	1	NA	NA	0	NA	NA	1	4	NA	1	1	8.54E-12	1	0.002863359	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	223174821	C	A	DISP1	CCDS1536.1	r.?	-	-	intronic	51	0	0	38	15	39.5	42	6	14.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.366846307	1.183423154	2	1.540385965	1.540385965	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.24E-25	1	7.02E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	234624831	C	T	-	-	-	-	-	-	32	0	0	50	16	32	31	2	6.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.91744511	0.958722555	2	0.700175439	0.700175439	1	NA	NA	1	NA	NA	1	4	NA	1	1	6.40E-25	1	0.010558179	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	238094424	G	T	-	-	-	-	-	-	59	0	0	50	19	38	45	7	15.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.276966068	1.138483034	2	1.680421053	1.680421053	1	NA	NA	1	NA	NA	1	4	NA	1	1	5.00E-31	1	0.000000003	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	8170074	A	G	-	-	-	-	-	-	64	0	0	43	14	32.6	38	3	7.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.37044448	5	2	3	1	2	0.62955552	1	2	NA	2	NA	0.37044448	NA	1.748162106	1.072784624	1.62955552	0.929982456	0.929982456	1	NA	NA	0	NA	NA	1	4	NA	1	1	4.18E-22	1	0.000925091	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	17	8204446	C	G	-	-	-	-	-	-	35	0	0	28	12	42.9	34	12	35.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	3.601202326	2	3	0	0	1	0.398797674	NA	3	NA	1	NA	0.601202326	1.71257485	0.856287425	2	3.661715649	1.220571883	3	NA	NA	0	NA	NA	1	4	NA	1	1	6.90E-21	1	1.21E-19	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	8250812	C	T	-	-	-	-	-	-	36	0	0	59	15	25.4	30	3	10	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	4	4	0	0	1	1	NA	NA	NA	NA	NA	NA	1.521972056	1.521972056	1	1.077192982	1.077192982	1	NA	NA	1	NA	NA	1	4	NA	1	1	9.90E-22	1	0.000458697	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	8298610	A	T	-	-	-	-	-	-	41	0	0	38	8	21.1	29	3	10.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.053315369	1.053315369	1	1.006508772	1.006508772	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.67E-11	1	0.000414371	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	8364550	G	C	-	-	-	-	-	-	49	0	0	57	12	21.1	37	5	13.5	0	0	NA	0	0	NA	1	0	0	1	TRUE	FALSE	4	5.626372055	2	3	2	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	1.264315369	1.264315369	1	1.673770754	1.673770754	1	NA	NA	0	0	0	1	4	NA	1	1	1.40E-16	1	0.00000119	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	8370544	C	A	-	-	-	-	-	-	63	0	0	57	13	22.8	36	4	11.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7	4.260310284	4	2	3	2	1	0.739689716	NA	3	NA	2	NA	0.260310284	2.050179641	1.02508982	2	1.224578652	1.224578652	1	NA	NA	1	NA	NA	0	4	NA	1	1	2.44E-18	1	0.0000324	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	8383201	C	T	ENSG00000227978	ENST00000418307	r.?	-	-	intronic	43	0	0	69	18	26.1	37	2	5.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6.732316688	4.32434803	5	2	1	2	0.267683312	0.67565197	5	3	2	2	0.732316688	0.32434803	2.277050823	1.004130873	2.267683312	0.599199004	0.599199004	1	NA	NA	0	NA	NA	0	4	NA	1	1	5.16E-26	1	0.014826063	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	240840447	G	T	-	-	-	-	-	-	36	0	0	40	8	20	30	2	6.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.198403194	1.198403194	1	0.721719298	0.721719298	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.61E-11	1	0.009909649	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	245902221	C	A	-	-	-	-	-	-	44	0	0	50	5	10	33	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.486710421	4	2	2	2	2	0.513289579	1	3	NA	2	NA	0.486710421	NA	0.647872639	0.647872639	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	0.00000549	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	246732910	C	G	CNST	CCDS1628.1	r.?	-	-	intronic	57	0	0	73	31	42.5	50	9	18	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.486710421	4	2	2	2	2	0.513289579	1	3	NA	2	NA	0.486710421	NA	2.753458715	1.107269545	2.486710421	1.938947368	0.969473684	2	NA	NA	0	NA	NA	1	4	NA	1	1	1.47E-51	1	4.07E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	8512626	C	T	-	-	-	-	-	-	46	0	0	38	12	31.6	35	1	2.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.577477046	1.577477046	1	0.283385965	0.283385965	1	NA	NA	1	NA	NA	1	4	NA	1	1	5.86E-19	1	0.16091139	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	246805738	G	T	CNST	CCDS1628.1	r.?	-	-	intronic	35	0	0	42	13	31	22	4	18.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.486710421	4	2	2	2	2	0.513289579	1	3	NA	2	NA	0.486710421	NA	2.008405181	1.00420259	2	1.960491228	1.960491228	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.72E-20	1	0.00000425	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	8531333	T	C	-	-	-	-	-	-	35	0	0	39	16	41	31	4	12.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.37044448	5	2	3	1	2	0.62955552	1	2	NA	2	NA	0.37044448	NA	2.198608784	1.099304392	2	1.518578947	1.518578947	1	NA	NA	0	NA	NA	1	4	NA	1	1	5.16E-27	1	0.0000177	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	8545112	A	C	AL135912.1	ENST00000498984	r.?	-	-	intronic	52	0	0	48	21	43.8	43	10	23.3	93	0	0	378	126	33.3	353	79	22.4	1.08E-79	TRUE	TRUE	4.236173977	5.609750478	2	3	2	2	0.763826023	0.390249522	3	3	2	3	0.236173977	0.609750478	2.727947196	1.219917244	2.236173977	2.884931511	0.961643837	3	2.073987252	1.036993626	2	2.773496388	0.924498796	3	4	3	1	1	9.35E-36	4.54E-188	1.61E-14	6.99E-103	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	1	248088457	C	T	OR2T8	CCDS31100.1	r.?	-	-	downstream	35	0	0	54	23	42.6	39	8	20.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.486710421	4	2	2	2	2	0.513289579	1	3	NA	2	NA	0.486710421	NA	2.759937442	1.109874885	2.486710421	2.208245614	1.104122807	2	NA	NA	0	NA	NA	1	4	NA	1	1	1.12E-38	1	2.09E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	8562635	G	T	PRAM1	CCDS45954.1	r.?	-	-	intronic	18	0	0	37	16	43.2	31	10	32.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5.428592363	5.384331439	3	3	2	2	0.571407637	0.615668561	4	4	2	2	0.428592363	0.384331439	3.205702799	0.934990941	3.428592363	3.926472388	1.160191447	3.384331439	NA	NA	0	NA	NA	0	4	NA	1	1	1.78E-27	1	3.94E-16	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	8576978	C	A	RERE	CCDS41243.1	r.?	-	-	intronic	58	0	0	35	7	20	28	4	14.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	0.998403194	0.998403194	1	1.683385965	1.683385965	1	NA	NA	0	NA	NA	1	4	NA	1	1	4.65E-10	1	0.0000116	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	8584946	C	T	GPR78	CCDS3403.1	r.?	-	-	intronic	26	0	0	27	10	37	24	1	4.2	2	0	0	0	0	NA	0	0	NA	1	TRUE	FALSE	2.661749236	3	2	2	0	1	0.338250764	1	2	NA	1	NA	0.661749236	NA	1.721893125	0.860946563	2	0.410421053	0.410421053	1	NA	NA	0	NA	NA	1	4	NA	1	1	7.62E-17	1	0.113346489	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	8612728	T	C	NXPH1	CCDS47540.1	r.?	-	-	intronic	42	0	0	55	17	30.9	44	7	15.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7	4.260310284	4	2	3	2	1	0.739689716	NA	3	NA	2	NA	0.260310284	2.778532934	0.926177645	3	1.754126177	1.754126177	1	NA	NA	1	NA	NA	0	4	NA	1	1	4.35E-26	1	2.55E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	8648364	C	T	AL135912.1	ENST00000498984	r.?	-	-	intronic	63	0	0	44	9	20.5	24	4	16.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.236173977	5.609750478	2	3	2	2	0.763826023	0.390249522	3	3	2	3	0.236173977	0.609750478	1.276778939	1.276778939	1	2.067740611	2.067740611	1	NA	NA	0	NA	NA	0	4	NA	1	1	1.18E-12	1	0.00000613	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	8659389	A	G	-	-	-	-	-	-	6	0	0	15	5	33.3	6	4	66.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	3	2	3	0	0	1	1	NA	NA	NA	NA	NA	NA	1.329341317	1.329341317	1	6.517877193	2.172625731	3	NA	NA	0	NA	NA	1	4	NA	1	1	0.000000009	1	9.30E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	8705106	C	G	KIAA0802	ENST00000456698	r.?	-	-	upstream	17	0	0	11	3	27.3	4	1	25	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	3	2	3	0	0	1	1	NA	NA	NA	NA	NA	NA	1.089820359	1.089820359	1	2.442982456	2.442982456	1	NA	NA	0	NA	NA	1	4	NA	1	1	0.00002	1	0.019850499	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	8736482	G	T	PLCB1	CCDS13103.1	r.?	-	-	intronic	62	0	0	46	18	39.1	33	9	27.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	4.362325493	2	2	1	2	1	0.637674507	NA	3	NA	2	NA	0.362325493	1.951878244	0.975939122	2	3.039651702	1.286720103	2.362325493	NA	NA	0	NA	NA	0	4	NA	1	1	9.41E-30	1	6.76E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	8755426	C	T	ST5	CCDS7791.1	r.?	-	-	intronic	46	0	0	55	10	18.2	33	3	9.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.908546906	0.908546906	1	0.889245614	0.889245614	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.33E-13	1	0.000609557	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	1032543	G	A	SNTG2	CCDS46220.1	r.?	-	-	intronic	40	0	0	41	31	75.6	37	15	40.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	4	4	0	0	1	1	NA	NA	NA	NA	NA	NA	4.529964072	1.132491018	4	4.362631579	1.090657895	4	NA	NA	1	NA	NA	1	4	NA	1	1	4.97E-63	1	2.58E-25	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	8847309	C	T	RERE	CCDS41243.1	r.?	-	-	intronic	32	0	0	39	20	51.3	30	5	16.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	2.560904192	1.280452096	2	1.965912281	1.965912281	1	NA	NA	0	NA	NA	1	4	NA	1	1	6.00E-36	1	0.000000401	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	8863447	G	C	ABAT	CCDS10534.1	r.?	-	-	intronic	37	0	0	35	12	34.3	33	3	9.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	5.626372055	2	3	2	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	2.055261477	1.027630739	2	1.128245471	1.128245471	1	NA	NA	0	NA	NA	0	4	NA	1	1	1.83E-19	1	0.000609557	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	17	8935048	G	A	NTN1	CCDS11148.1	r.?	-	-	intronic	38	0	0	24	6	25	26	1	3.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	3.601202326	2	3	0	0	1	0.398797674	NA	3	NA	1	NA	0.601202326	0.998003992	0.998003992	1	0.394179022	0.394179022	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.95E-09	1	0.122190858	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	8963551	C	T	CARHSP1	CCDS10537.1	r.?	-	-	upstream	19	0	0	55	19	34.5	15	3	20	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	5.626372055	2	3	2	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	2.067245509	1.033622754	2	2.479660376	2.479660376	1	NA	NA	0	NA	NA	0	4	NA	1	1	4.51E-30	1	0.0000544	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	8972018	C	T	TMEM9B	CCDS7796.1	r.?	-	-	intronic	52	0	0	52	18	34.6	42	14	33.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.727237525	0.863618762	2	3.254052632	1.627026316	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.39E-28	1	2.83E-22	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	4456482	A	G	-	-	-	-	-	-	60	0	0	51	20	39.2	28	5	17.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	4	4	0	0	1	1	NA	NA	NA	NA	NA	NA	2.348870259	1.17443513	2	1.928175439	1.928175439	1	NA	NA	1	NA	NA	1	4	NA	1	1	6.38E-33	1	0.000000279	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	9065918	G	A	SEMA5A	CCDS3875.1	r.?	-	-	intronic	48	0	0	34	6	17.6	26	1	3.8	1	0	0	0	0	NA	3	0	0	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.70259481	0.70259481	1	0.333333333	0.333333333	1	NA	NA	1	0	0	1	4	NA	1	1	1.86E-08	1	0.122190858	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	9073478	G	A	-	-	-	-	-	-	53	0	0	50	12	24	33	10	30.3	112	0	0	263	77	29.3	204	28	13.7	3.99E-23	TRUE	TRUE	7	4.260310284	4	2	3	2	1	0.739689716	NA	3	NA	2	NA	0.260310284	2.158083832	1.079041916	2	3.342768753	1.478898175	2.260310284	2.634660679	0.878220226	3	1.511416895	1.199241896	1.260310284	4	3	1	1	2.49E-17	1.63E-110	8.14E-16	3.49E-31	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	4	9091000	G	A	-	-	-	-	-	-	28	0	0	42	6	14.3	29	5	17.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.661749236	3	2	2	0	1	0.338250764	1	2	NA	1	NA	0.661749236	NA	0.665488424	0.665488424	1	1.68077193	1.68077193	1	NA	NA	0	NA	NA	1	4	NA	1	1	7.02E-08	1	0.000000336	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	9110996	T	A	-	-	-	-	-	-	37	0	0	41	4	9.8	23	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	5.626372055	2	3	2	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	0.587217565	0.587217565	1	0	0	1	NA	NA	0	NA	NA	0	3	NA	1	1	0.0000546	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	5201516	G	T	-	-	-	-	-	-	51	0	0	58	14	24.1	33	5	15.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	4	4	0	0	1	1	NA	NA	NA	NA	NA	NA	1.444075848	1.444075848	1	1.637333333	1.637333333	1	NA	NA	1	NA	NA	1	4	NA	1	1	5.04E-20	1	0.00000066	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	9151019	C	T	-	-	-	-	-	-	31	0	0	65	21	32.3	35	7	20	1	0	0	0	0	NA	0	0	NA	1	TRUE	FALSE	7	4.260310284	4	2	3	2	1	0.739689716	NA	3	NA	2	NA	0.260310284	2.904421158	0.968140386	3	2.206448022	0.976170412	2.260310284	NA	NA	1	NA	NA	0	4	NA	1	1	2.35E-32	1	4.65E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	9179298	G	C	DENND5A	CCDS31423.1	r.?	-	-	intronic	56	0	0	58	10	17.2	36	2	5.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.858626747	0.858626747	1	0.54722807	0.54722807	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.10E-13	1	0.014070883	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	9279430	G	A	PLCB4	CCDS13104.1	r.?	-	-	intronic	62	0	0	42	20	47.6	24	4	16.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	4.362325493	2	2	1	2	1	0.637674507	NA	3	NA	2	NA	0.362325493	2.376199601	1.1880998	2	1.859420638	1.859420638	1	NA	NA	0	NA	NA	0	4	NA	1	1	4.41E-35	1	0.00000613	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	9331067	C	T	-	-	-	-	-	-	53	0	0	62	18	29	41	7	17.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7	4.260310284	4	2	3	2	1	0.739689716	NA	3	NA	2	NA	0.260310284	2.607684631	0.86922821	3	1.886513059	1.886513059	1	NA	NA	1	NA	NA	0	4	NA	1	1	5.72E-27	1	1.51E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	9339103	C	T	-	-	-	-	-	-	45	0	0	44	9	20.5	30	2	6.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5.428592363	5.384331439	3	3	2	2	0.571407637	0.615668561	4	4	2	2	0.428592363	0.384331439	1.521224708	1.521224708	1	0.814469505	0.814469505	1	NA	NA	0	NA	NA	0	4	NA	1	1	1.18E-12	1	0.009909649	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	9365299	T	C	-	-	-	-	-	-	62	0	0	61	7	11.5	44	1	2.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.236173977	5.609750478	2	3	2	2	0.763826023	0.390249522	3	3	2	3	0.236173977	0.609750478	0.716241844	0.716241844	1	0.284778647	0.284778647	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.69E-08	1	0.197923942	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	17492119	C	A	-	-	-	-	-	-	44	0	0	55	17	30.9	30	5	16.7	0	0	NA	0	0	NA	1	0	0	1	TRUE	FALSE	4	4	4	4	0	0	1	1	NA	NA	NA	NA	NA	NA	1.851532934	0.925766467	2	1.798912281	1.798912281	1	NA	NA	1	0	0	1	4	NA	1	1	4.35E-26	1	0.000000401	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	9492411	C	A	-	-	-	-	-	-	46	0	0	45	17	37.8	31	4	12.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7	4.260310284	4	2	3	2	1	0.739689716	NA	3	NA	2	NA	0.260310284	3.398982036	1.132994012	3	1.423158974	1.423158974	1	NA	NA	1	NA	NA	0	4	NA	1	1	7.37E-28	1	0.0000177	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	9494015	T	A	C20orf103	CCDS13106.1	r.?	-	-	upstream	52	0	0	39	6	15.4	36	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	4.362325493	2	2	1	2	1	0.637674507	NA	3	NA	2	NA	0.362325493	0.768770459	0.768770459	1	0	0	1	NA	NA	0	NA	NA	0	3	NA	1	1	4.43E-08	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	24226284	A	G	UBXN2A	CCDS1704.1	r.4571a>g	c.?	p.?	3'UTR variant	41	0	0	37	26	70.3	44	20	45.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	4	4	0	0	1	1	NA	NA	NA	NA	NA	NA	4.212387226	1.053096806	4	4.90122807	1.225307018	4	NA	NA	1	NA	NA	1	4	NA	1	1	1.21E-51	1	1.50E-34	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	9536263	T	C	RALBP1	CCDS11845.1	r.2519u>c	c.?	p.?	3'UTR variant	22	0	0	42	22	52.4	15	3	20	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	3	2	3	0	0	1	1	NA	NA	NA	NA	NA	NA	2.091816367	1.045908184	2	1.954385965	1.954385965	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.11E-39	1	0.0000544	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	9542165	G	T	PAK7	CCDS13107.1	r.?	-	-	intronic	61	0	0	39	6	15.4	39	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	4.362325493	2	2	1	2	1	0.637674507	NA	3	NA	2	NA	0.362325493	0.768770459	0.768770459	1	0	0	1	NA	NA	0	NA	NA	0	3	NA	1	1	4.43E-08	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	9565571	C	G	-	-	-	-	-	-	33	0	0	26	9	34.6	22	2	9.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.381237525	1.381237525	1	0.798245614	0.798245614	1	NA	NA	1	NA	NA	1	4	NA	1	1	5.65E-15	1	0.005403392	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	9586324	C	A	-	-	-	-	-	-	34	0	0	39	12	30.8	40	1	2.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.229540918	1.229540918	1	0.219298246	0.219298246	1	NA	NA	1	NA	NA	1	4	NA	1	1	8.43E-19	1	0.181679879	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	28676992	G	T	PLB1	ENST00000416713	r.?	-	-	upstream	16	0	0	51	35	68.6	27	10	37	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	4	4	0	0	1	1	NA	NA	NA	NA	NA	NA	4.110522954	1.027630739	4	3.985614035	0.996403509	4	NA	NA	1	NA	NA	1	4	NA	1	1	1.93E-68	1	7.62E-17	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	34330475	G	A	-	-	-	-	-	-	56	0	0	66	23	34.8	62	7	11.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	2.781221557	0.927073852	3	1.44322807	1.44322807	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.38E-36	1	3.02E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	9701559	G	A	PAK7	CCDS13107.1	r.?	-	-	intronic	46	0	0	44	6	13.6	35	8	22.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	4.362325493	2	2	1	2	1	0.637674507	NA	3	NA	2	NA	0.362325493	0.678914172	0.678914172	1	2.549744468	1.079336643	2.362325493	NA	NA	0	NA	NA	1	4	NA	1	1	9.37E-08	1	8.15E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	9734422	G	T	-	-	-	-	-	-	43	0	0	40	7	17.5	36	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.698602794	0.698602794	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	1.26E-09	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	9741847	G	T	-	-	-	-	-	-	53	0	0	50	15	30	34	2	5.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	5.626372055	2	3	2	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	1.79760479	0.898802395	2	0.731499811	0.731499811	1	NA	NA	0	NA	NA	1	4	NA	1	1	5.83E-23	1	0.012612579	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	9794064	G	A	PTPRD	CCDS43786.1	r.?	-	-	intronic	50	0	0	27	9	33.3	34	4	11.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1	1	1	1	0	0	1	1	NA	NA	NA	NA	NA	NA	0.996341317	0.996341317	1	0.917087719	0.917087719	1	NA	NA	1	NA	NA	1	4	NA	1	1	8.44E-15	1	0.0000257	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	9795625	C	A	PTPRD	CCDS43786.1	r.?	-	-	intronic	42	0	0	25	11	44	16	3	18.8	0	0	NA	2	0	0	0	0	NA	1	TRUE	FALSE	1	1	1	1	0	0	1	1	NA	NA	NA	NA	NA	NA	1.316487026	1.316487026	1	1.461122807	1.461122807	1	0	0	1	NA	NA	1	4	NA	1	1	2.04E-19	1	0.0000667	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	9859705	T	C	GRIN2A	CCDS10539.1	r.?	-	-	intronic	59	0	0	42	11	26.2	54	6	11.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	5.626372055	2	3	2	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	1.569908184	1.569908184	1	1.376211509	1.376211509	1	NA	NA	0	NA	NA	0	4	NA	1	1	1.81E-16	1	0.000000329	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	34845972	A	G	-	-	-	-	-	-	51	0	0	87	11	12.6	38	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	1.006994012	1.006994012	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	9.65E-13	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	36234659	G	T	-	-	-	-	-	-	45	0	0	58	9	15.5	46	5	10.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	1.238762475	1.238762475	1	1.392140351	1.392140351	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.67E-11	1	0.00000361	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	10042112	A	T	-	-	-	-	-	-	49	0	0	37	9	24.3	33	4	12.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	3	2	3	0	0	1	1	NA	NA	NA	NA	NA	NA	0.97005988	0.97005988	1	1.182403509	1.182403509	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.14E-13	1	0.0000228	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	10056430	C	T	-	-	-	-	-	-	51	0	0	34	6	17.6	43	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	4.362325493	2	2	1	2	1	0.637674507	NA	3	NA	2	NA	0.362325493	0.87859481	0.87859481	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	1.86E-08	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	39687489	G	T	-	-	-	-	-	-	52	0	0	67	18	26.9	50	7	14	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	2.149852295	1.074926148	2	1.788070175	1.788070175	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.83E-26	1	6.46E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	40080973	C	T	-	-	-	-	-	-	50	0	0	75	11	14.7	30	2	6.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	1.174826347	1.174826347	1	0.855719298	0.855719298	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.78E-13	1	0.009909649	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	10119374	G	A	GRIN2A	CCDS10539.1	r.?	-	-	intronic	32	0	0	43	9	20.9	41	4	9.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	5.626372055	2	3	2	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	1.252331337	1.252331337	1	1.215033584	1.215033584	1	NA	NA	0	NA	NA	1	4	NA	1	1	9.45E-13	1	0.0000546	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	10125726	G	T	FANCD2	CCDS2595.1	r.?	-	-	intronic	19	0	0	48	9	18.8	33	1	3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.37044448	5	2	3	1	2	0.62955552	1	2	NA	2	NA	0.37044448	NA	1.008142564	1.008142564	1	0.353157895	0.353157895	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.75E-12	1	0.15245715	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	40762399	G	T	SLC8A1	CCDS46264.1	r.?	-	-	intronic	53	0	0	63	4	6.3	39	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	0.503497006	0.503497006	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.000294233	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	10281459	G	C	-	-	-	-	-	-	46	0	0	38	6	15.8	43	3	7	1	0	0	0	0	NA	0	0	NA	1	TRUE	FALSE	2	3	2	3	0	0	1	1	NA	NA	NA	NA	NA	NA	0.630738523	0.630738523	1	0.684035088	0.684035088	1	NA	NA	0	NA	NA	1	4	NA	1	1	3.76E-08	1	0.001328364	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	10281791	G	C	-	-	-	-	-	-	34	0	0	31	7	22.6	32	3	9.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	3	2	3	0	0	1	1	NA	NA	NA	NA	NA	NA	0.902195609	0.902195609	1	0.918561404	0.918561404	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.85E-10	1	0.000556213	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	10282111	G	T	-	-	-	-	-	-	45	0	0	23	6	26.1	43	5	11.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	3	2	3	0	0	1	1	NA	NA	NA	NA	NA	NA	1.041916168	1.041916168	1	1.13354386	1.13354386	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.47E-09	1	0.00000257	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	10282484	G	C	-	-	-	-	-	-	48	0	0	28	6	21.4	53	7	13.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	3	2	3	0	0	1	1	NA	NA	NA	NA	NA	NA	0.854291417	0.854291417	1	1.289894737	1.289894737	1	NA	NA	0	NA	NA	1	4	NA	1	1	5.36E-09	1	9.85E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	10343506	A	T	-	-	-	-	-	-	49	0	0	101	12	11.9	48	4	8.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	12.69145318	14	10	11	2	3	0.308546822	1	10	NA	3	NA	0.691453178	NA	1.747332828	0.873666414	2	1.724070175	1.724070175	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.93E-13	1	0.000102016	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	10419460	G	A	-	-	-	-	-	-	45	0	0	52	18	34.6	26	4	15.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	5.626372055	2	3	2	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	2.073237525	1.036618762	2	1.90933849	1.90933849	1	NA	NA	0	NA	NA	0	4	NA	1	1	1.39E-28	1	0.00000856	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	21	10484493	A	G	-	-	-	-	-	-	105	0	0	73	11	15.1	65	4	6.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5.21139392	6	4	5	1	1	0.78860608	1	4	NA	2	NA	0.21139392	NA	1.087714893	1.087714893	1	0.791859649	0.791859649	1	NA	NA	0	NA	NA	0	4	NA	1	1	1.31E-13	1	0.000331785	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	10485469	A	T	AC009945.1	ENST00000510654	r.?	-	-	downstream	60	0	0	58	5	8.6	34	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	7	4.260310284	4	2	3	2	1	0.739689716	NA	3	NA	2	NA	0.260310284	0.773313373	0.773313373	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	0.0000115	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	10488961	A	G	CLNK	CCDS47024.1	r.4657u>c	c.?	p.?	3'UTR variant	43	0	0	39	11	28.2	30	4	13.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.661749236	3	2	2	0	1	0.338250764	1	2	NA	1	NA	0.661749236	NA	1.312361787	1.312361787	1	1.299666667	1.299666667	1	NA	NA	0	NA	NA	1	4	NA	1	1	7.20E-17	1	0.0000154	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	43948310	C	A	PLEKHH2	CCDS1812.1	r.?	-	-	intronic	42	0	0	62	14	22.6	57	11	19.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	1.806195609	0.903097804	2	2.464982456	0.821660819	3	NA	NA	1	NA	NA	1	4	NA	1	1	1.42E-19	1	7.29E-15	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	10503584	C	G	ATF7IP2	CCDS10540.1	r.?	-	-	intronic	29	0	0	47	9	19.1	37	0	0	0	0	NA	2	0	0	0	0	NA	1	TRUE	FALSE	4	5.626372055	2	3	2	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	1.14447505	1.14447505	1	0	0	1	0	NA	0	NA	NA	0	3	NA	1	1	2.24E-12	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	44562185	C	A	PREPL	CCDS33190.1	r.?	-	-	intronic	36	0	0	44	8	18.2	33	5	15.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	1.454546906	1.454546906	1	1.941333333	1.941333333	1	NA	NA	1	NA	NA	1	4	NA	1	1	5.90E-11	1	0.00000066	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	10535258	C	A	DFFA	CCDS118.1	r.?	-	-	upstream	15	0	0	18	8	44.4	2	2	100	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	2.21645509	1.108227545	2	11.77192982	3.923976608	3	NA	NA	0	NA	NA	1	4	NA	1	1	1.63E-14	1	0.000025	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	10543075	G	A	NAPG	CCDS45827.1	r.?	-	-	intronic	51	0	0	37	10	27	25	8	32	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	3	2	3	0	0	1	1	NA	NA	NA	NA	NA	NA	1.077844311	1.077844311	1	3.127017544	1.042339181	3	NA	NA	0	NA	NA	1	4	NA	1	1	3.01E-15	1	3.92E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	48186294	G	A	-	-	-	-	-	-	78	0	0	66	37	56.1	32	9	28.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	4.483520958	1.12088024	4	3.588912281	0.89722807	4	NA	NA	1	NA	NA	1	4	NA	1	1	2.83E-67	1	4.94E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	10588524	C	T	MID1	CCDS14138.1	r.151g>a	c.?	p.?	5'UTR variant	16	0	0	73	7	9.6	22	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	6.732316688	4.32434803	5	2	1	2	0.267683312	0.67565197	5	3	2	2	0.732316688	0.32434803	0.837535935	0.837535935	1	0	NA	0	NA	NA	0	NA	NA	0	NA	NA	1	1	9.54E-08	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	21	10616852	G	C	-	-	-	-	-	-	119	0	0	91	9	9.9	87	2	2.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5.21139392	6	4	5	1	1	0.78860608	1	4	NA	2	NA	0.21139392	NA	0.713137579	0.713137579	1	0.293754386	0.293754386	1	NA	NA	0	NA	NA	0	4	NA	1	1	1.06E-09	1	0.070774795	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	10640991	G	A	SOX7	CCDS47801.1	r.?	-	-	intronic	46	0	0	17	7	41.2	28	2	7.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1	2.620991218	1	2	0	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.232710579	1.232710579	1	0.666897394	0.666897394	1	NA	NA	0	NA	NA	0	4	NA	1	1	1.45E-12	1	0.008668191	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	17	10694839	C	G	-	-	-	-	-	-	55	0	0	27	7	25.9	33	6	18.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	3.601202326	2	3	0	0	1	0.398797674	NA	3	NA	1	NA	0.601202326	1.033932136	1.033932136	1	1.887910051	1.887910051	1	NA	NA	0	NA	NA	1	4	NA	1	1	6.36E-11	1	1.54E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	114155568	A	G	MAGI3	CCDS860.1	r.?	-	-	intronic	54	0	0	50	19	38	33	7	21.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.896966068	0.948483034	2	2.495649123	0.831883041	3	NA	NA	0	NA	NA	1	4	NA	1	1	5.00E-31	1	2.98E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	10823635	C	A	QTRT1	CCDS12248.1	r.1003c>a	c.978C>A	p.S326R	missense	11	0	0	32	7	21.9	6	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5.428592363	5.384331439	3	3	2	2	0.571407637	0.615668561	4	4	2	2	0.428592363	0.384331439	1.625113225	1.625113225	1	0	0	1	NA	NA	0	NA	NA	0	4	NA	1	1	2.36E-10	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	10881116	T	C	-	-	-	-	-	-	56	0	0	48	27	56.2	35	11	31.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	4.362325493	2	2	1	2	1	0.637674507	NA	3	NA	2	NA	0.362325493	2.805512974	1.402756487	2	3.49615617	1.479963781	2.362325493	NA	NA	0	NA	NA	0	4	NA	1	1	1.50E-49	1	1.82E-17	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	21	10936108	G	C	TPTE	CCDS33512.1	r.?	-	-	intronic	89	0	0	74	5	6.8	50	0	0	0	0	NA	0	0	NA	2	0	0	1	TRUE	FALSE	5.21139392	6	4	5	1	1	0.78860608	1	4	NA	2	NA	0.21139392	NA	0.489831872	0.489831872	1	0	0	1	NA	NA	0	0	NA	0	3	NA	1	1	0.0000378	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	49199580	G	T	FSHR	CCDS1843.1	r.?	-	-	intronic	53	0	0	62	19	30.6	38	8	21.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	2.445556886	0.815185629	3	2.694877193	0.898292398	3	NA	NA	1	NA	NA	1	4	NA	1	1	6.66E-29	1	1.67E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	21	10994762	G	T	TPTE	CCDS33512.1	r.?	-	-	upstream	69	0	0	64	8	12.5	45	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5.21139392	6	4	5	1	1	0.78860608	1	4	NA	2	NA	0.21139392	NA	0.900426236	0.900426236	1	0	0	1	NA	NA	0	NA	NA	0	3	NA	1	1	1.35E-09	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	11014305	G	A	-	-	-	-	-	-	44	0	0	43	21	48.8	27	8	29.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.37044448	5	2	3	1	2	0.62955552	1	2	NA	2	NA	0.37044448	NA	2.616880699	1.308440349	2	3.484491228	1.161497076	3	NA	NA	0	NA	NA	1	4	NA	1	1	4.52E-37	1	7.97E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	11027247	G	A	-	-	-	-	-	-	36	0	0	22	7	31.8	32	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.269461078	1.269461078	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	1.25E-11	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	17	11033135	C	T	-	-	-	-	-	-	59	0	0	38	12	31.6	30	1	3.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	3.601202326	2	3	0	0	1	0.398797674	NA	3	NA	1	NA	0.601202326	1.261477046	1.261477046	1	0.342313361	0.342313361	1	NA	NA	0	NA	NA	0	4	NA	1	1	5.86E-19	1	0.139615808	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	11124883	A	G	PHF14	CCDS47542.1	r.?	-	-	intronic	42	0	0	50	21	42	31	8	25.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7	4.260310284	4	2	3	2	1	0.739689716	NA	3	NA	2	NA	0.260310284	3.776646707	0.944161677	4	2.846317948	1.259259832	2.260310284	NA	NA	1	NA	NA	0	4	NA	1	1	2.79E-35	1	2.78E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	11218849	G	C	-	-	-	-	-	-	29	0	0	38	9	23.7	30	3	10	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	4	4	0	0	1	1	NA	NA	NA	NA	NA	NA	1.420107784	1.420107784	1	1.077192982	1.077192982	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.79E-13	1	0.000458697	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	11283345	C	T	FAM167A	CCDS5981.1	r.?	-	-	intronic	42	0	0	28	5	17.9	26	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1	2.620991218	1	2	0	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0.535570858	0.535570858	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	0.000000279	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	49909862	G	T	-	-	-	-	-	-	40	0	0	55	5	9.1	43	1	2.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	0.727273453	0.727273453	1	0.293754386	0.293754386	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.00000883	1	0.193893409	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	11340922	A	C	ATG7	CCDS2605.1	r.?	-	-	intronic	52	0	0	41	11	26.8	33	1	3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.37044448	5	2	3	1	2	0.62955552	1	2	NA	2	NA	0.37044448	NA	1.4371394	1.4371394	1	0.353157895	0.353157895	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.34E-16	1	0.15245715	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	11344075	T	A	ATG7	CCDS2605.1	r.?	-	-	intronic	56	1	1.8	40	10	25	34	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.37044448	5	2	3	1	2	0.62955552	1	2	NA	2	NA	0.37044448	NA	1.340615112	1.340615112	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	0.244746891	1	7.22E-15	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	11358770	G	A	UBIAD1	ENST00000376804	r.?	-	-	downstream	29	0	0	26	14	53.8	35	7	20	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	2.685704591	1.342852295	2	2.354385965	1.177192982	2	NA	NA	0	NA	NA	1	4	NA	1	1	5.57E-26	1	4.65E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	11361824	A	G	-	-	-	-	-	-	29	1	3.4	33	16	48.5	23	6	26.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	2.421127745	1.210563872	2	2.550473684	1.275236842	2	NA	NA	1	NA	NA	1	4	NA	0.135292269	1	1.64E-28	1	1.47E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	11418465	G	T	-	-	-	-	-	-	53	0	0	49	9	18.4	33	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	4.362325493	2	2	1	2	1	0.637674507	NA	3	NA	2	NA	0.362325493	0.918530938	0.918530938	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	3.35E-12	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	52202395	C	T	-	-	-	-	-	-	58	0	0	61	6	9.8	44	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	0.783217565	0.783217565	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.000000685	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	17	11509170	C	G	DNAH9	CCDS11160.1	r.?	-	-	intronic	50	0	0	31	16	51.6	34	10	29.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	3.601202326	2	3	0	0	1	0.398797674	NA	3	NA	1	NA	0.601202326	2.05988024	1.02994012	2	3.049700852	1.016566951	3	NA	NA	0	NA	NA	0	4	NA	1	1	4.27E-29	1	1.15E-15	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	11513732	C	T	-	-	-	-	-	-	41	0	0	46	7	15.2	35	2	5.7	1	0	0	0	0	NA	2	0	0	1	TRUE	FALSE	4.293868134	5.486552635	2	3	2	2	0.706131866	0.513447365	3	3	2	3	0.293868134	0.486552635	0.955454384	0.955454384	1	0.6987335	0.6987335	1	NA	NA	0	0	NA	0	4	NA	1	1	3.53E-09	1	0.013332991	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	11538536	C	T	PTCHD2	CCDS41247.1	r.?	-	-	upstream	4	0	0	28	6	21.4	12	2	16.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.068291417	1.068291417	1	1.965912281	1.965912281	1	NA	NA	0	NA	NA	1	4	NA	1	1	5.36E-09	1	0.001595918	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	11545052	G	T	GALNTL4	CCDS7807.1	r.?	-	-	intronic	37	0	0	43	6	14	31	3	9.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	3	2	2	2	1	1	1	NA	NA	NA	NA	NA	NA	0.838882236	0.838882236	1	0.947877193	0.947877193	1	NA	NA	1	NA	NA	0	4	NA	1	1	8.13E-08	1	0.000505952	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	17	11595868	A	G	DNAH9	CCDS11160.1	r.?	-	-	intronic	44	0	0	30	7	23.3	25	6	24	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	3.601202326	2	3	0	0	1	0.398797674	NA	3	NA	1	NA	0.601202326	0.930139721	0.930139721	1	2.489551716	1.037833138	2.398797674	NA	NA	0	NA	NA	1	4	NA	1	1	1.44E-10	1	2.55E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	11628018	G	A	ARHGAP6	CCDS14140.1	r.?	-	-	intronic	39	0	0	49	10	20.4	37	4	10.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6.732316688	4.32434803	5	2	1	2	0.267683312	0.67565197	5	3	2	2	0.732316688	0.32434803	1.779763862	0.889881931	2	1.198398008	1.198398008	1	NA	NA	0	NA	NA	0	4	NA	1	1	6.72E-14	1	0.0000362	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	11656165	C	A	-	-	-	-	-	-	32	0	0	46	15	32.6	38	6	15.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.627397206	0.813698603	2	1.859964912	1.859964912	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.35E-23	1	3.76E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	11677486	G	A	-	-	-	-	-	-	22	0	0	19	6	31.6	17	2	11.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5.428592363	5.384331439	3	3	2	2	0.571407637	0.615668561	4	4	2	2	0.428592363	0.384331439	2.344912233	0.965543773	2.428592363	1.434438829	1.434438829	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.01E-10	1	0.003234386	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	11682122	C	G	ARHGAP6	CCDS14140.1	r.?	-	-	intronic	24	0	0	58	6	10.3	35	1	2.9	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	6.732316688	4.32434803	5	2	1	2	0.267683312	0.67565197	5	3	2	2	0.732316688	0.32434803	0.898606264	0.898606264	1	0.321792058	NA	0	NA	NA	0	NA	NA	0	NA	NA	1	1	0.000000506	1	0.16091139	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	11682300	C	T	ARHGAP6	CCDS14140.1	r.?	-	-	intronic	15	0	0	66	5	7.6	27	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	6.732316688	4.32434803	5	2	1	2	0.267683312	0.67565197	5	3	2	2	0.732316688	0.32434803	0.663049282	0.663049282	1	0	NA	0	NA	NA	0	NA	NA	0	NA	NA	1	1	0.0000217	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	11682363	C	T	ARHGAP6	CCDS14140.1	r.1459g>a	c.586G>A	p.E196K	missense	13	0	0	74	8	10.8	22	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	6.732316688	4.32434803	5	2	1	2	0.267683312	0.67565197	5	3	2	2	0.732316688	0.32434803	0.942227927	0.942227927	1	0	NA	0	NA	NA	0	NA	NA	0	NA	NA	1	1	4.39E-09	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	11682467	C	A	ARHGAP6	CCDS14140.1	r.1355g>u	c.482G>T	p.G161V	missense	14	0	0	68	6	8.8	16	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	6.732316688	4.32434803	5	2	1	2	0.267683312	0.67565197	5	3	2	2	0.732316688	0.32434803	0.767741274	0.767741274	1	0	NA	0	NA	NA	0	NA	NA	0	NA	NA	1	1	0.00000131	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	11682515	C	T	ARHGAP6	CCDS14140.1	r.1307g>a	c.434G>A	p.G145E	missense	15	0	0	71	6	8.5	15	1	6.7	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	6.732316688	4.32434803	5	2	1	2	0.267683312	0.67565197	5	3	2	2	0.732316688	0.32434803	0.741568276	0.741568276	1	0.743450616	NA	0	NA	NA	0	NA	NA	0	NA	NA	1	1	0.00000169	1	0.072431031	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	52263782	C	T	-	-	-	-	-	-	65	0	0	69	10	14.5	36	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	1.158842315	1.158842315	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	2.54E-12	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	11725383	C	A	-	-	-	-	-	-	30	0	0	29	4	13.8	25	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.550898204	0.550898204	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.0000134	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	52982484	G	C	-	-	-	-	-	-	60	0	0	78	18	23.1	43	2	4.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	1.846155689	0.923077844	2	0.600280702	0.600280702	1	NA	NA	1	NA	NA	1	4	NA	1	1	6.10E-25	1	0.019709573	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	11758331	C	A	SNN	CCDS10549.1	r.?	-	-	upstream	33	0	0	39	5	12.8	32	3	9.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	5.626372055	2	3	2	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	0.766978044	0.766978044	1	1.165440377	1.165440377	1	NA	NA	0	NA	NA	0	4	NA	1	1	0.00000156	1	0.000556213	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	11803397	A	G	ECHDC3	CCDS7084.1	r.?	-	-	intronic	18	0	0	42	14	33.3	22	5	22.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.329341317	1.329341317	1	1.99122807	1.99122807	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.83E-22	1	7.67E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	11844305	A	C	-	-	-	-	-	-	62	0	0	56	5	8.9	44	6	13.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.293868134	5.486552635	2	3	2	2	0.706131866	0.513447365	3	3	2	3	0.293868134	0.486552635	0.559443685	0.559443685	1	1.667153615	1.667153615	1	NA	NA	0	NA	NA	1	4	NA	1	1	0.00000965	1	9.37E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	11845357	A	G	-	-	-	-	-	-	55	0	0	52	6	11.5	37	4	10.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	3	2	2	2	1	1	1	NA	NA	NA	NA	NA	NA	0.689081836	0.689081836	1	1.055368421	1.055368421	1	NA	NA	1	NA	NA	0	4	NA	1	1	0.000000261	1	0.0000362	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	11846708	C	T	ZC3H7A	CCDS10550.1	r.?	-	-	intronic	51	0	0	45	13	28.9	35	1	2.9	0	0	NA	0	0	NA	1	0	0	1	TRUE	FALSE	4	5.626372055	2	3	2	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	1.731692615	0.865846307	2	0.359550755	0.359550755	1	NA	NA	0	0	0	1	4	NA	1	1	7.68E-20	1	0.16091139	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	11891870	C	G	LPIN1	CCDS1682.1	r.?	-	-	intronic	19	0	0	47	15	31.9	25	6	24	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	4	4	0	0	1	1	NA	NA	NA	NA	NA	NA	1.911453094	0.955726547	2	2.585263158	0.861754386	3	NA	NA	1	NA	NA	1	4	NA	1	1	1.97E-23	1	2.55E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	11910441	G	A	BTBD3	CCDS13113.1	r.?	-	-	downstream	44	0	0	33	16	48.5	30	7	23.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	4.362325493	2	2	1	2	1	0.637674507	NA	3	NA	2	NA	0.362325493	2.421127745	1.210563872	2	2.594281489	1.098189685	2.362325493	NA	NA	0	NA	NA	0	4	NA	1	1	1.64E-28	1	1.44E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	11946957	T	A	ZNF440	CCDS42503.1	r.?	-	-	downstream	49	0	0	31	8	25.8	42	1	2.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5.428592363	5.384331439	3	3	2	2	0.571407637	0.615668561	4	4	2	2	0.428592363	0.384331439	1.914516949	0.957258475	2	0.29175027	0.29175027	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.78E-12	1	0.189842622	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	11990424	C	T	-	-	-	-	-	-	37	0	0	59	11	18.6	27	2	7.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7	4.260310284	4	2	3	2	1	0.739689716	NA	3	NA	2	NA	0.260310284	1.67251497	1.67251497	1	0.816385768	0.816385768	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.10E-14	1	0.00807567	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	12007332	G	T	-	-	-	-	-	-	25	0	0	34	6	17.6	21	3	14.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.37044448	5	2	3	1	2	0.62955552	1	2	NA	2	NA	0.37044448	NA	0.943793039	0.943793039	1	1.683385965	1.683385965	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.86E-08	1	0.000155401	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	53950794	G	A	ASB3	CCDS1847.1	r.?	-	-	intronic	56	0	0	69	8	11.6	58	6	10.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	0.927073852	0.927073852	1	1.315508772	1.315508772	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.49E-09	1	0.000000506	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	12126149	C	T	-	-	-	-	-	-	42	0	0	56	7	12.5	38	5	13.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6.732316688	4.32434803	5	2	1	2	0.267683312	0.67565197	5	3	2	2	0.732316688	0.32434803	1.090541582	1.090541582	1	1.464708677	1.464708677	1	NA	NA	0	NA	NA	0	4	NA	1	1	1.46E-08	1	0.00000137	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	12141330	T	G	SYN2	ENST00000341648	r.?	-	-	intronic	21	0	0	49	4	8.2	25	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.37044448	5	2	3	1	2	0.62955552	1	2	NA	2	NA	0.37044448	NA	0.439721757	1.187011227	0.37044448	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	0.000110643	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	12170531	G	T	-	-	-	-	-	-	25	0	0	39	6	15.4	36	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.293868134	5.486552635	2	3	2	2	0.706131866	0.513447365	3	3	2	3	0.293868134	0.486552635	0.968026152	0.968026152	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	4.43E-08	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	12204322	G	A	TIMP4	CCDS2608.1	r.?	-	-	upstream	23	0	0	67	19	28.4	40	6	15	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.37044448	5	2	3	1	2	0.62955552	1	2	NA	2	NA	0.37044448	NA	1.522938767	0.934573108	1.62955552	1.765789474	1.765789474	1	NA	NA	0	NA	NA	1	4	NA	1	1	3.67E-28	1	5.18E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	12225147	A	G	FRMPD4	CCDS35201.1	r.?	-	-	intronic	54	0	0	60	10	16.7	48	11	22.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6.732316688	4.32434803	5	2	1	2	0.267683312	0.67565197	5	3	2	2	0.732316688	0.32434803	1.456963554	1.456963554	1	2.541047629	1.093230272	2.32434803	NA	NA	0	NA	NA	0	4	NA	1	1	5.86E-13	1	9.31E-16	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	12231869	G	C	-	-	-	-	-	-	43	0	0	54	15	27.8	32	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	4	4	0	0	1	1	NA	NA	NA	NA	NA	NA	1.665780439	0.83289022	2	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	2.20E-22	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	54065011	G	T	ASB3	ENST00000406625	r.?	-	-	intronic	27	0	0	63	11	17.5	42	4	9.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	1.398602794	1.398602794	1	1.213333333	1.213333333	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.37E-14	1	0.0000601	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	12257452	G	A	FRMPD4	CCDS35201.1	r.?	-	-	intronic	51	0	0	58	8	13.8	47	10	21.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6.732316688	4.32434803	5	2	1	2	0.267683312	0.67565197	5	3	2	2	0.732316688	0.32434803	1.203957906	1.203957906	1	2.363507183	1.016847371	2.32434803	NA	NA	0	NA	NA	0	4	NA	1	1	5.99E-10	1	4.27E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	12291817	G	A	EDN1	CCDS4522.1	r.?	-	-	intronic	37	0	0	48	10	20.8	28	1	3.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.293868134	5.486552635	2	3	2	2	0.706131866	0.513447365	3	3	2	3	0.293868134	0.486552635	1.307463893	1.307463893	1	0.441305369	0.441305369	1	NA	NA	0	NA	NA	1	4	NA	1	1	5.37E-14	1	0.130947004	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	62047637	T	C	FAM161A	CCDS42687.2	r.?	-	-	downstream	50	0	0	91	14	15.4	38	6	15.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	1.230770459	1.230770459	1	2.017964912	2.017964912	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.55E-17	1	3.76E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	12405626	G	C	ZNF44	CCDS45988.1	r.77c>g	c.?	p.?	5'UTR variant	16	0	0	31	10	32.3	8	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5.428592363	5.384331439	3	3	2	2	0.571407637	0.615668561	4	4	2	2	0.428592363	0.384331439	2.396856491	0.986932401	2.428592363	0	0	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.94E-16	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	12430103	A	G	PPARG	CCDS2610.2	r.?	-	-	intronic	67	0	0	56	7	12.5	37	0	0	130	0	0	270	27	10	278	0	0	1	TRUE	TRUE	3.37044448	5	2	3	1	2	0.62955552	1	2	NA	2	NA	0.37044448	NA	0.670307556	0.670307556	1	0	0	1	0.536246045	1.447574668	0.37044448	0	0	1	3	2	1	1	1.46E-08	2.45E-26	1	1	YES	1_1	0_0	somatic	custom.pulldown.HiSeq
PD9852b	6	12483990	T	C	-	-	-	-	-	-	56	0	0	57	11	19.3	38	4	10.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.293868134	5.486552635	2	3	2	2	0.706131866	0.513447365	3	3	2	3	0.293868134	0.486552635	1.213175632	1.213175632	1	1.287140658	1.287140658	1	NA	NA	0	NA	NA	1	4	NA	1	1	7.29E-15	1	0.0000403	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	12491511	G	C	-	-	-	-	-	-	52	0	0	53	23	43.4	28	6	21.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7	4.260310284	4	2	3	2	1	0.739689716	NA	3	NA	2	NA	0.260310284	3.90253493	0.975633733	4	2.360899383	1.044502341	2.260310284	NA	NA	1	NA	NA	0	4	NA	1	1	6.43E-39	1	5.36E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	12517558	C	T	-	-	-	-	-	-	14	0	0	37	14	37.8	26	4	15.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5.428592363	5.384331439	3	3	2	2	0.571407637	0.615668561	4	4	2	2	0.428592363	0.384331439	2.804989949	0.93499665	3	1.872064235	1.872064235	1	NA	NA	0	NA	NA	0	4	NA	1	1	3.35E-23	1	0.00000856	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	12568722	G	A	-	-	-	-	-	-	58	0	0	38	5	13.2	36	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.526946108	0.526946108	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.00000137	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	12612606	A	G	SPIRE1	CCDS45829.1	r.?	-	-	intronic	49	0	0	33	19	57.6	32	12	37.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	3	2	3	0	0	1	1	NA	NA	NA	NA	NA	NA	2.299401198	1.149700599	2	3.664473684	1.221491228	3	NA	NA	0	NA	NA	1	4	NA	1	1	1.46E-35	1	5.03E-20	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	12637782	A	T	-	-	-	-	-	-	47	0	0	26	11	42.3	27	6	22.2	132	0	0	130	54	41.5	164	32	19.5	3.09E-31	TRUE	TRUE	2.661749236	3	2	2	0	1	0.338250764	1	2	NA	1	NA	0.661749236	NA	1.968542681	0.984271341	2	2.169368421	1.084684211	2	1.931312559	0.96565628	2	1.905526316	0.952763158	2	4	3	1	1	3.52E-19	5.67E-88	4.23E-09	1.37E-40	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	16	12664126	C	T	SNX29	CCDS45416.1	r.2983c>u	c.?	p.?	3'UTR variant	39	0	0	45	17	37.8	36	6	16.7	198	0	0	39	12	30.8	23	4	17.4	7.61E-05	TRUE	TRUE	4	5.626372055	2	3	2	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	2.264982036	1.132491018	2	2.070516414	2.070516414	1	1.845540918	0.922770459	2	2.157304527	2.157304527	1	4	3	1	1	7.37E-28	8.43E-19	2.68E-08	0.00000513	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	12664229	C	A	-	-	-	-	-	-	48	0	0	48	7	14.6	36	4	11.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.728834331	0.728834331	1	1.084684211	1.084684211	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.81E-09	1	0.0000324	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	12746034	T	C	TEAD1	CCDS7810.1	r.?	-	-	intronic	29	0	0	49	11	22.4	29	4	13.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.118211577	1.118211577	1	1.348526316	1.348526316	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.19E-15	1	0.0000134	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	64467833	G	A	-	-	-	-	-	-	48	0	0	54	5	9.3	25	1	4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	0.743257485	0.743257485	1	0.510877193	0.510877193	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.00000806	1	0.117779757	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	68187095	G	T	-	-	-	-	-	-	58	0	0	45	14	31.1	40	9	22.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.863516966	0.931758483	2	2.423684211	1.211842105	2	NA	NA	1	NA	NA	1	4	NA	1	1	8.81E-22	1	4.64E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	12752646	C	T	CPPED1	CCDS42120.1	r.?	-	-	downstream	42	0	0	53	16	30.2	31	9	29	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	5.626372055	2	3	2	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	1.809588822	0.904794411	2	3.595507545	1.198502515	3	NA	NA	0	NA	NA	0	4	NA	1	1	1.90E-24	1	3.57E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	12775175	A	G	-	-	-	-	-	-	50	0	0	31	13	41.9	30	5	16.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.672654691	0.836327345	2	1.464912281	1.464912281	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.32E-22	1	0.000000401	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	12793460	G	A	CAMK1D	CCDS7091.1	r.?	-	-	intronic	40	0	0	37	23	62.2	19	5	26.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.483033932	1.241516966	2	2.307017544	1.153508772	2	NA	NA	1	NA	NA	1	4	NA	1	1	6.81E-44	1	3.43E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	12809320	A	T	PHACTR1	ENST00000379350	r.?	-	-	intronic	41	0	0	55	21	38.2	39	10	25.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.293868134	5.486552635	2	3	2	2	0.706131866	0.513447365	3	3	2	3	0.293868134	0.486552635	2.401207727	1.046794143	2.293868134	3.13817151	1.04605717	3	NA	NA	0	NA	NA	1	4	NA	1	1	3.41E-34	1	5.44E-15	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	12835488	T	C	-	-	-	-	-	-	51	0	0	52	23	44.2	38	8	21.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	4.362325493	2	2	1	2	1	0.637674507	NA	3	NA	2	NA	0.362325493	2.206471058	1.103235529	2	2.349327872	0.994497955	2.362325493	NA	NA	0	NA	NA	1	4	NA	1	1	3.66E-39	1	1.67E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	12879158	C	A	ENSG00000250305	ENST00000503976	r.970c>a	c.970C>A	p.L324M	missense	38	0	0	18	5	27.8	28	7	25	204	0	0	59	12	20.3	97	5	5.2	0.003010925	TRUE	TRUE	1	2.620991218	1	2	0	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0.831780439	0.831780439	1	2.348230261	1.17411513	2	0.607379242	0.607379242	1	0.488431894	0.488431894	1	4	3	1	1	2.54E-08	2.20E-16	8.44E-11	0.000137452	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	5	12880330	A	G	-	-	-	-	-	-	55	0	0	26	15	57.7	46	11	23.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.303393214	1.151696607	2	2.096491228	1.048245614	2	NA	NA	1	NA	NA	1	4	NA	1	1	2.24E-28	1	5.55E-16	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	12936512	T	G	PRAMEF23	CCDS30592.1	r.?	-	-	downstream	50	0	0	58	4	6.9	47	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	0.344449102	0.344449102	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	0.000213772	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	12953405	T	C	-	-	-	-	-	-	35	0	0	32	5	15.6	41	1	2.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	4.362325493	2	2	1	2	1	0.637674507	NA	3	NA	2	NA	0.362325493	0.778754491	0.778754491	1	0.267222128	0.267222128	1	NA	NA	0	NA	NA	0	4	NA	1	1	0.000000562	1	0.18577148	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	69051596	C	T	ARHGAP25	CCDS46312.1	r.?	-	-	intronic	34	0	0	48	15	31.2	39	5	12.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.869508982	0.934754491	2	1.378807018	1.378807018	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.86E-23	1	0.00000156	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	13089967	C	A	IQSEC1	ENST00000435445	r.?	-	-	intronic	14	0	0	37	8	21.6	19	2	10.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.37044448	5	2	3	1	2	0.62955552	1	2	NA	2	NA	0.37044448	NA	1.158291457	1.158291457	1	1.236052632	1.236052632	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.33E-11	1	0.004039874	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	70195901	G	C	-	-	-	-	-	-	18	0	0	35	11	31.4	11	2	18.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.881493014	0.940746507	2	1.960491228	1.960491228	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.82E-17	1	0.001334363	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	13126166	G	A	-	-	-	-	-	-	31	0	0	40	6	15	19	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.37044448	5	2	3	1	2	0.62955552	1	2	NA	2	NA	0.37044448	NA	0.804369067	0.804369067	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	5.18E-08	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	72521324	G	A	EXOC6B	CCDS46333.1	r.?	-	-	intronic	44	0	0	39	13	33.3	35	3	8.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.995341317	0.997670659	2	0.926385965	0.926385965	1	NA	NA	1	NA	NA	1	4	NA	1	1	8.79E-21	1	0.000725791	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	13187944	C	T	DLC1	CCDS5989.1	r.?	-	-	intronic	49	0	0	20	5	25	28	5	17.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1	2.620991218	1	2	0	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0.748003992	0.748003992	1	1.681332867	1.681332867	1	NA	NA	0	NA	NA	0	4	NA	1	1	4.55E-08	1	0.000000279	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	13190046	G	C	SHISA9	CCDS45417.1	r.?	-	-	intronic	55	0	0	51	11	21.6	36	4	11.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	5.626372055	2	3	2	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	1.294275449	1.294275449	1	1.376211509	1.376211509	1	NA	NA	0	NA	NA	0	4	NA	1	1	1.94E-15	1	0.0000324	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	72567195	G	A	EXOC6B	CCDS46333.1	r.?	-	-	intronic	39	0	0	48	8	16.7	44	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.000666667	1.000666667	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	1.23E-10	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	Y	13267426	C	G	-	-	-	-	-	-	24	0	0	20	4	20	19	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1	NA	NA	1	NA	NA	1	NA	NA	1	NA	NA	1	1	0.00000284	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	73736276	C	T	ALMS1	CCDS42697.1	r.?	-	-	intronic	45	0	0	54	20	37	36	6	16.7	0	0	NA	0	0	NA	2	0	0	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.217045908	1.108522954	2	1.798912281	1.798912281	1	NA	NA	1	0	0	1	4	NA	1	1	2.61E-32	1	2.68E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	17	13292556	C	T	-	-	-	-	-	-	49	0	0	29	14	48.3	32	7	21.9	0	0	NA	1	0	0	0	0	NA	1	TRUE	FALSE	2	3.601202326	2	3	0	0	1	0.398797674	NA	3	NA	1	NA	0.601202326	1.928143713	0.964071856	2	2.271715941	0.947022738	2.398797674	0	NA	0	NA	NA	0	4	NA	1	1	4.41E-25	1	2.36E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	13301096	T	C	-	-	-	-	-	-	38	0	0	50	19	38	38	8	21.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.896966068	0.948483034	2	2.061877193	1.030938596	2	NA	NA	1	NA	NA	1	4	NA	1	1	5.00E-31	1	1.67E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	13373151	C	A	NUP210	CCDS33704.1	r.?	-	-	intronic	42	0	0	58	20	34.5	29	10	34.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.37044448	5	2	3	1	2	0.62955552	1	2	NA	2	NA	0.37044448	NA	1.850048855	0.925024427	2	4.061315789	1.35377193	3	NA	NA	0	NA	NA	1	4	NA	1	1	1.47E-31	1	1.79E-16	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	175059615	C	A	TNN	CCDS30943.1	r.?	-	-	intronic	34	0	0	47	15	31.9	34	8	23.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.911453094	0.955726547	2	2.531403509	1.265701754	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.97E-23	1	6.32E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	13467970	A	T	-	-	-	-	-	-	52	0	0	64	18	28.1	35	11	31.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	4	4	0	0	1	1	NA	NA	NA	NA	NA	NA	1.683756487	0.841878244	2	3.382385965	1.127461988	3	NA	NA	1	NA	NA	1	4	NA	1	1	1.10E-26	1	1.82E-17	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	13535394	C	T	CACNA1A	CCDS45998.1	r.?	-	-	intronic	25	0	0	31	14	45.2	15	6	40	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.350372916	5.384331439	3	3	0	2	0.649627084	0.615668561	3	4	1	2	0.350372916	0.384331439	2.414759776	0.911358353	2.649627084	4.862504505	1.436769593	3.384331439	NA	NA	0	NA	NA	1	4	NA	1	1	1.49E-24	1	7.52E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	13560989	T	A	-	-	-	-	-	-	50	0	0	51	14	27.5	40	6	15	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	4	4	0	0	1	1	NA	NA	NA	NA	NA	NA	1.647804391	0.823902196	2	1.615789474	1.615789474	1	NA	NA	1	NA	NA	1	4	NA	1	1	6.64E-21	1	5.18E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	74973960	C	T	-	-	-	-	-	-	45	0	0	49	17	34.7	32	8	25	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.079229541	1.03961477	2	2.692982456	1.346491228	2	NA	NA	1	NA	NA	1	4	NA	1	1	4.26E-27	1	3.69E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	13575238	C	T	-	-	-	-	-	-	29	0	0	28	11	39.3	24	4	16.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.568862275	1.568862275	1	1.464912281	1.464912281	1	NA	NA	1	NA	NA	1	4	NA	1	1	9.70E-19	1	0.00000613	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	13588962	G	A	-	-	-	-	-	-	66	0	0	15	8	53.3	17	2	11.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1	2.620991218	1	2	0	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.594744511	1.594744511	1	1.108364683	1.108364683	1	NA	NA	0	NA	NA	0	4	NA	1	1	2.44E-15	1	0.003234386	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	13590403	G	C	TASP1	CCDS13116.1	r.?	-	-	intronic	45	0	0	42	6	14.3	40	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	4.362325493	2	2	1	2	1	0.637674507	NA	3	NA	2	NA	0.362325493	0.713858283	0.713858283	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	7.02E-08	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	13596222	C	T	-	-	-	-	-	-	35	0	0	26	15	57.7	28	4	14.3	210	0	0	358	79	22.1	575	87	15.1	4.82E-72	TRUE	TRUE	4	5.626372055	2	3	2	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	3.457393214	1.728696607	2	1.772957169	1.772957169	1	1.324235529	1.324235529	1	1.872143584	0.936071792	2	4	3	1	1	2.24E-28	2.39E-102	0.0000116	3.54E-97	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	12	13620952	T	C	-	-	-	-	-	-	52	0	0	40	12	30	52	3	5.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.49760479	1.49760479	1	0.56677193	0.56677193	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.20E-18	1	0.002300591	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	13623432	C	T	-	-	-	-	-	-	47	0	0	35	15	42.9	30	7	23.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	2.14157485	1.070787425	2	2.276859649	1.138429825	2	NA	NA	1	NA	NA	1	4	NA	1	1	9.02E-26	1	1.44E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	13657675	C	T	-	-	-	-	-	-	43	0	0	39	13	33.3	28	8	28.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.662341317	0.831170659	2	2.79477193	1.397385965	2	NA	NA	1	NA	NA	1	4	NA	1	1	8.79E-21	1	1.11E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	13660128	G	A	-	-	-	-	-	-	53	0	0	50	8	16	47	7	14.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	5.626372055	2	3	2	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	0.958722555	0.958722555	1	1.84734698	1.84734698	1	NA	NA	0	NA	NA	0	4	NA	1	1	1.74E-10	1	4.12E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	13666034	C	G	-	-	-	-	-	-	56	0	0	39	7	17.9	20	1	5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.714570858	0.714570858	1	0.438596491	0.438596491	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.04E-09	1	0.09538952	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	13743508	T	C	GRIN2B	CCDS8662.1	r.?	-	-	intronic	42	0	0	42	11	26.2	35	3	8.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.307908184	1.307908184	1	0.840385965	0.840385965	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.81E-16	1	0.000725791	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	13749632	G	T	-	-	-	-	-	-	65	0	0	52	11	21.2	37	3	8.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	5.626372055	2	3	2	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	1.270307385	1.270307385	1	1.004262452	1.004262452	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.44E-15	1	0.000855237	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	13750869	C	A	FRMD4A	CCDS7101.1	r.?	-	-	intronic	40	0	0	22	10	45.5	32	7	21.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.816367265	0.908183633	2	1.921052632	1.921052632	1	NA	NA	1	NA	NA	1	4	NA	1	1	5.98E-18	1	2.36E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	13794745	G	A	DNAH5	CCDS3882.1	r.?	-	-	intronic	48	0	0	38	19	50	33	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.996007984	0.998003992	2	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	6.16E-34	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	13803323	C	T	CCDC90A	CCDS35495.1	r.?	-	-	intronic	26	0	0	55	17	30.9	29	3	10.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.293868134	5.486552635	2	3	2	2	0.706131866	0.513447365	3	3	2	3	0.293868134	0.486552635	1.942338188	0.971169094	2	1.262623693	1.262623693	1	NA	NA	0	NA	NA	0	4	NA	1	1	4.35E-26	1	0.000414371	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	13826109	G	C	-	-	-	-	-	-	58	0	0	55	15	27.3	52	11	21.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.293868134	5.486552635	2	3	2	2	0.706131866	0.513447365	3	3	2	3	0.293868134	0.486552635	1.71604636	0.85802318	2	2.598798282	1.03395771	2.513447365	NA	NA	0	NA	NA	0	4	NA	1	1	3.01E-22	1	2.44E-15	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	198636381	C	T	PTPRC	CCDS1397.1	r.?	-	-	intronic	47	0	0	48	5	10.4	26	1	3.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.623169661	0.623169661	1	0.409333333	0.409333333	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.00000447	1	0.122190858	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	13893452	C	A	GPM6B	CCDS48084.1	r.?	-	-	intronic	43	0	0	64	8	12.5	51	4	7.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6.732316688	4.32434803	5	2	1	2	0.267683312	0.67565197	5	3	2	2	0.732316688	0.32434803	1.090541582	1.090541582	1	0.865509673	0.865509673	1	NA	NA	0	NA	NA	0	4	NA	1	1	1.35E-09	1	0.000129466	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	202061910	G	A	-	-	-	-	-	-	32	0	0	48	7	14.6	24	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.874834331	0.874834331	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	4.81E-09	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	13954318	C	A	-	-	-	-	-	-	33	0	0	47	19	40.4	39	6	15.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	5.626372055	2	3	2	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	2.420774451	1.210387226	2	1.90933849	1.90933849	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.16E-31	1	4.43E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	13991502	T	A	SGCZ	CCDS5992.2	r.?	-	-	intronic	42	0	0	25	8	32	22	3	13.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1	2.620991218	1	2	0	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0.95744511	0.95744511	1	1.277437262	1.277437262	1	NA	NA	0	NA	NA	0	4	NA	1	1	3.92E-13	1	0.000179267	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	77055062	G	T	LRRTM4	CCDS46346.1	r.?	-	-	intronic	55	0	0	57	24	42.1	40	9	22.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.522638723	1.261319361	2	2.423684211	1.211842105	2	NA	NA	1	NA	NA	1	4	NA	1	1	3.83E-40	1	4.64E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	14010270	G	C	-	-	-	-	-	-	29	0	0	19	10	52.6	10	1	10	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	3	2	3	0	0	1	1	NA	NA	NA	NA	NA	NA	2.099800399	1.0499002	2	0.977192982	0.977192982	1	NA	NA	0	NA	NA	1	4	NA	1	1	8.66E-19	1	0.04888987	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	17	14012956	G	A	COX10	CCDS11166.1	r.?	-	-	intronic	42	0	0	22	7	31.8	23	1	4.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	3.601202326	2	3	0	0	1	0.398797674	NA	3	NA	1	NA	0.601202326	1.269461078	1.269461078	1	0.446044682	0.446044682	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.25E-11	1	0.108890944	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	14018084	A	G	-	-	-	-	-	-	45	0	0	39	6	15.4	37	2	5.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	0.768770459	0.768770459	1	0.635684211	0.635684211	1	NA	NA	0	NA	NA	1	4	NA	1	1	4.43E-08	1	0.014826063	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	79155939	G	A	-	-	-	-	-	-	40	0	0	28	4	14.3	27	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.856858283	0.856858283	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.0000116	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	206573101	G	A	SRGAP2	ENST00000367123	r.?	-	-	intronic	12	0	0	16	7	43.8	8	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.624502994	1.312251497	2	0	0	1	NA	NA	1	NA	NA	1	4	NA	1	1	8.59E-13	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	14231110	G	T	ASF1B	CCDS12306.1	r.1270c>a	c.?	p.?	3'UTR variant	25	0	0	28	18	64.3	22	6	27.3	0	0	NA	1	0	0	0	0	NA	1	TRUE	FALSE	3.350372916	5.384331439	3	3	0	2	0.649627084	0.615668561	3	4	1	2	0.350372916	0.384331439	3.435156052	1.145052017	3	3.318659325	0.980595248	3.384331439	0	NA	0	NA	NA	1	4	NA	1	1	4.77E-35	1	1.09E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	14272795	G	T	-	-	-	-	-	-	54	0	0	38	6	15.8	30	3	10	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.788738523	0.788738523	1	0.977192982	0.977192982	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.76E-08	1	0.000458697	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	14280279	T	C	-	-	-	-	-	-	52	0	0	43	16	37.2	44	13	29.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	4	4	0	0	1	1	NA	NA	NA	NA	NA	NA	2.22902994	1.11451497	2	3.177719298	1.059239766	3	NA	NA	1	NA	NA	1	4	NA	1	1	3.56E-26	1	5.49E-20	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	14350935	C	T	-	-	-	-	-	-	39	0	0	26	16	61.5	20	4	20	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	3	2	3	0	0	1	1	NA	NA	NA	NA	NA	NA	2.45508982	1.22754491	2	1.954385965	1.954385965	1	NA	NA	0	NA	NA	1	4	NA	1	1	7.73E-31	1	0.00000284	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	14351830	A	G	-	-	-	-	-	-	52	0	0	36	14	38.9	34	7	20.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.941894212	0.970947106	2	2.013017544	1.006508772	2	NA	NA	1	NA	NA	1	4	NA	1	1	2.09E-23	1	3.73E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	14366231	G	T	TRIO	CCDS3883.1	r.?	-	-	intronic	56	0	0	50	30	60	38	8	21.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.395209581	1.19760479	2	1.850877193	1.850877193	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.98E-56	1	1.67E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	14369165	A	G	SGCZ	CCDS5992.2	r.?	-	-	intronic	61	0	0	31	11	35.5	29	2	6.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1	2.620991218	1	2	0	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.062165669	1.062165669	1	0.648111552	0.648111552	1	NA	NA	0	NA	NA	0	4	NA	1	1	3.77E-18	1	0.009279585	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	80448327	A	G	CTNNA2	CCDS42703.2	r.?	-	-	intronic	37	0	0	57	17	29.8	31	4	12.9	1	0	0	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.785620758	0.892810379	2	1.389578947	1.389578947	1	NA	NA	1	NA	NA	1	4	NA	1	1	8.82E-26	1	0.0000177	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	14386268	A	G	DGKB	CCDS47547.1	r.?	-	-	intronic	46	0	0	51	20	39.2	42	10	23.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7	4.260310284	4	2	3	2	1	0.739689716	NA	3	NA	2	NA	0.260310284	3.524870259	0.881217565	4	2.625673146	1.161642791	2.260310284	NA	NA	1	NA	NA	0	4	NA	1	1	6.38E-33	1	1.24E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	14400840	A	T	-	-	-	-	-	-	49	0	0	49	22	44.9	32	8	25	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.293868134	5.486552635	2	3	2	2	0.706131866	0.513447365	3	3	2	3	0.293868134	0.486552635	2.822361962	1.230394163	2.293868134	3.064620615	1.021540205	3	NA	NA	0	NA	NA	0	4	NA	1	1	1.04E-37	1	3.69E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	82303307	C	A	-	-	-	-	-	-	48	0	0	64	8	12.5	29	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.749001996	0.749001996	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	1.35E-09	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	14458467	C	A	-	-	-	-	-	-	60	0	0	68	6	8.8	40	3	7.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6.732316688	4.32434803	5	2	1	2	0.267683312	0.67565197	5	3	2	2	0.732316688	0.32434803	0.767741274	0.767741274	1	0.832220839	0.832220839	1	NA	NA	0	NA	NA	0	4	NA	1	1	0.00000131	1	0.001075403	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	82877035	G	T	-	-	-	-	-	-	43	0	0	48	6	12.5	43	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.749001996	0.749001996	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.00000016	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	14518164	C	G	COPB1	CCDS7815.1	r.?	-	-	intronic	55	0	0	46	9	19.6	37	5	13.5	0	0	NA	1	0	0	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.97843513	0.97843513	1	1.319210526	1.319210526	1	0	0	1	NA	NA	1	4	NA	1	1	1.82E-12	1	0.00000119	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	14615955	G	A	PSMA1	CCDS31431.1	r.?	-	-	intronic	50	0	0	31	10	32.3	27	5	18.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.612421158	1.612421158	1	1.807807018	1.807807018	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.94E-16	1	0.00000023	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	14621601	G	C	DNAJB1	CCDS12312.1	r.?	-	-	downstream	26	0	0	23	10	43.5	29	9	31	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.350372916	5.384331439	3	3	0	2	0.649627084	0.615668561	3	4	1	2	0.350372916	0.384331439	2.323939165	0.877081601	2.649627084	3.768440992	1.113496435	3.384331439	NA	NA	0	NA	NA	1	4	NA	1	1	1.05E-17	1	1.79E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	14676819	G	A	TECR	CCDS12313.1	r.?	-	-	downstream	16	0	0	29	18	62.1	10	2	20	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.350372916	5.384331439	3	3	0	2	0.649627084	0.615668561	3	4	1	2	0.350372916	0.384331439	3.317623497	1.105874499	3	2.431252253	2.431252253	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.25E-34	1	0.001095391	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	21	14734984	C	A	-	-	-	-	-	-	47	0	0	78	14	17.9	38	7	18.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5.21139392	6	4	5	1	1	0.78860608	1	4	NA	2	NA	0.21139392	NA	1.28941037	1.28941037	1	2.350035088	1.175017544	2	NA	NA	0	NA	NA	1	4	NA	1	1	4.63E-18	1	8.61E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	14742431	C	A	ANKH	CCDS3885.1	r.?	-	-	intronic	21	0	0	34	6	17.6	23	2	8.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.70259481	0.70259481	1	0.763157895	0.763157895	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.86E-08	1	0.00589844	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	14747572	A	T	MACROD2	CCDS13120.2	r.?	-	-	intronic	40	0	0	37	5	13.5	35	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	4.362325493	2	2	1	2	1	0.637674507	NA	3	NA	2	NA	0.362325493	0.673922156	0.673922156	1	0	0	1	NA	NA	0	NA	NA	0	3	NA	1	1	0.00000119	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	101530247	C	T	NPAS2	CCDS2048.1	r.?	-	-	intronic	54	0	0	57	19	33.3	39	4	10.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.128496294	4	2	2	2	2	0.871503706	1	3	NA	2	NA	0.128496294	NA	2.038130583	1.019065292	2	1.109508772	1.109508772	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.01E-29	1	0.0000447	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	14912569	G	A	-	-	-	-	-	-	37	0	0	61	14	23	55	7	12.7	0	0	NA	1	0	0	0	0	NA	1	TRUE	FALSE	4.293868134	5.486552635	2	3	2	2	0.706131866	0.513447365	3	3	2	3	0.293868134	0.486552635	1.445753344	1.445753344	1	1.556827272	1.556827272	1	0	NA	0	NA	NA	1	4	NA	1	1	1.10E-19	1	1.28E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	17	14956320	A	C	-	-	-	-	-	-	34	0	0	19	9	47.4	21	10	47.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	3.601202326	2	3	0	0	1	0.398797674	NA	3	NA	1	NA	0.601202326	1.892215569	0.946107784	2	4.937610904	1.645870301	3	NA	NA	0	NA	NA	0	4	NA	1	1	1.72E-16	1	3.28E-18	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	14972637	G	A	OR7A2P	ENST00000304105	r.?	-	-	downstream	57	1	1.8	26	11	42.3	29	3	10.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.350372916	5.384331439	3	3	0	2	0.649627084	0.615668561	3	4	1	2	0.350372916	0.384331439	2.259830498	1.129915249	2	1.25209491	1.25209491	1	NA	NA	0	NA	NA	1	4	NA	0.248523156	1	3.52E-19	1	0.000414371	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	103212824	G	T	-	-	-	-	-	-	44	0	0	65	9	13.8	35	2	5.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.128496294	4	2	2	2	2	0.871503706	1	3	NA	2	NA	0.128496294	NA	0.844630692	0.844630692	1	0.614	0.614	1	NA	NA	1	NA	NA	0	4	NA	1	1	4.85E-11	1	0.013332991	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	15055176	G	A	-	-	-	-	-	-	41	0	0	24	12	50	28	9	32.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	3	2	3	0	0	1	1	NA	NA	NA	NA	NA	NA	1.996007984	0.998003992	2	3.136789474	1.045596491	3	NA	NA	0	NA	NA	1	4	NA	1	1	6.25E-22	1	1.24E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	15112487	C	T	-	-	-	-	-	-	56	0	0	47	28	59.6	25	9	36	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	2.975241517	1.487620758	2	3.517894737	1.758947368	2	NA	NA	1	NA	NA	1	4	NA	1	1	2.37E-52	1	3.71E-15	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	104948192	G	A	-	-	-	-	-	-	57	0	0	70	9	12.9	45	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.128496294	4	2	2	2	2	0.871503706	1	3	NA	2	NA	0.128496294	NA	0.789546082	0.789546082	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	9.65E-11	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	15188605	G	A	-	-	-	-	-	-	20	0	0	44	7	15.9	32	2	6.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	4	4	0	0	1	1	NA	NA	NA	NA	NA	NA	0.952730539	0.952730539	1	0.667859649	0.667859649	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.55E-09	1	0.011224977	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	15193669	G	A	-	-	-	-	-	-	47	0	0	48	7	14.6	35	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	7	4.260310284	4	2	3	2	1	0.739689716	NA	3	NA	2	NA	0.260310284	1.312834331	1.312834331	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	4.81E-09	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	105620687	A	G	-	-	-	-	-	-	56	0	0	63	12	19	29	2	6.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.128496294	4	2	2	2	2	0.871503706	1	3	NA	2	NA	0.128496294	NA	1.16289733	1.16289733	1	0.743263158	0.743263158	1	NA	NA	1	NA	NA	1	4	NA	1	1	5.15E-16	1	0.009279585	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	15293862	A	T	-	-	-	-	-	-	46	0	0	40	11	27.5	28	7	25	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.372804391	1.372804391	1	2.442982456	1.221491228	2	NA	NA	1	NA	NA	1	4	NA	1	1	9.88E-17	1	8.44E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	15301550	A	G	RERG	CCDS8673.1	r.?	-	-	intronic	32	0	0	39	20	51.3	19	2	10.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	2.560904192	1.280452096	2	1.026052632	1.026052632	1	NA	NA	1	NA	NA	1	4	NA	1	1	6.00E-36	1	0.004039874	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	15389120	G	A	FIGF	CCDS14166.1	r.?	-	-	intronic	43	0	0	36	16	44.4	38	6	15.8	0	0	NA	0	0	NA	1	0	0	1	TRUE	FALSE	6.732316688	4.32434803	5	2	1	2	0.267683312	0.67565197	5	3	2	2	0.732316688	0.32434803	3.873603699	0.968400925	4	1.753211901	1.753211901	1	NA	NA	0	0	NA	0	4	NA	1	1	1.01E-27	1	3.76E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	15389820	T	C	BRD4	CCDS12328.1	r.?	-	-	intronic	44	0	0	22	4	18.2	25	1	4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.350372916	5.384331439	3	3	0	2	0.649627084	0.615668561	3	4	1	2	0.350372916	0.384331439	0.972314777	0.972314777	1	0.486250451	0.486250451	1	NA	NA	0	NA	NA	0	4	NA	1	1	0.00000425	1	0.117779757	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	17	15391110	T	C	CDRT4	CCDS32572.1	r.?	-	-	intronic	42	0	0	35	14	40	20	8	40	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	3.601202326	2	3	0	0	1	0.398797674	NA	3	NA	1	NA	0.601202326	1.596806387	0.798403194	2	4.14925286	1.383084287	3	NA	NA	0	NA	NA	1	4	NA	1	1	1.28E-23	1	4.66E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	15449897	A	G	TMEM195	CCDS34604.1	r.?	-	-	intronic	60	0	0	58	6	10.3	37	1	2.7	0	0	NA	0	0	NA	2	0	0	1	FALSE	FALSE	7	4.260310284	4	2	3	2	1	0.739689716	NA	3	NA	2	NA	0.260310284	0.926177645	0.926177645	1	0.297870483	NA	0	NA	NA	1	0	NA	0	NA	NA	1	1	0.000000506	1	0.169281299	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	15478141	C	G	AKAP8	CCDS12329.1	r.?	-	-	intronic	34	0	0	29	16	55.2	30	7	23.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.350372916	5.384331439	3	3	0	2	0.649627084	0.615668561	3	4	1	2	0.350372916	0.384331439	2.948998664	0.982999555	3	2.832408874	0.944136291	3	NA	NA	0	NA	NA	0	4	NA	1	1	9.74E-30	1	1.44E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	15492635	A	C	-	-	-	-	-	-	55	0	0	28	18	64.3	30	7	23.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.566866267	1.283433134	2	2.043859649	1.021929825	2	NA	NA	1	NA	NA	1	4	NA	1	1	4.77E-35	1	1.44E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	15603410	C	G	-	-	-	-	-	-	46	0	0	34	15	44.1	38	8	21.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5.384331439	2	3	1	2	1	0.615668561	NA	4	NA	2	NA	0.384331439	2.201479042	1.100739521	2	2.564971127	1.075761148	2.384331439	NA	NA	0	NA	NA	0	4	NA	1	1	5.18E-26	1	1.67E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	15614132	T	G	ITGA8	CCDS31155.1	r.?	-	-	intronic	52	0	0	28	14	50	25	6	24	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.996007984	0.998003992	2	2.105263158	1.052631579	2	NA	NA	1	NA	NA	1	4	NA	1	1	2.29E-25	1	2.55E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	17	15617174	G	T	ZNF286A	CCDS11172.1	r.?	-	-	intronic	55	0	0	26	11	42.3	24	10	41.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	3.601202326	2	3	0	0	1	0.398797674	NA	3	NA	1	NA	0.601202326	1.688622754	0.844311377	2	4.325596107	1.441865369	3	NA	NA	0	NA	NA	1	4	NA	1	1	3.52E-19	1	1.80E-17	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	1878990	C	T	MYT1L	CCDS46222.1	r.?	-	-	intronic	15	0	0	38	9	23.7	24	6	25	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	4	4	0	0	1	1	NA	NA	NA	NA	NA	NA	1.420107784	1.420107784	1	2.692982456	0.897660819	3	NA	NA	1	NA	NA	1	4	NA	1	1	2.79E-13	1	1.95E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	15669060	T	A	MEOX2	CCDS34605.1	r.?	-	-	intronic	46	0	0	60	6	10	26	0	0	96	0	0	290	22	7.6	244	0	0	1	FALSE	FALSE	7	4.260310284	4	2	3	2	1	0.739689716	NA	3	NA	2	NA	0.260310284	0.899201597	0.899201597	1	0	NA	0	0.683393214	0.683393214	1	0	NA	0	NA	NA	1	1	0.000000621	3.87E-19	1	1	YES	1_1	0_0	somatic	custom.pulldown.HiSeq
PD9852b	2	106661925	G	A	-	-	-	-	-	-	54	0	0	45	8	17.8	39	6	15.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.128496294	4	2	2	2	2	0.871503706	1	3	NA	2	NA	0.128496294	NA	1.089451183	1.089451183	1	1.658877193	1.658877193	1	NA	NA	1	NA	NA	1	4	NA	1	1	7.14E-11	1	4.43E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	15736166	A	T	DDX1	CCDS1686.1	r.?	-	-	intronic	48	0	0	46	7	15.2	26	3	11.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	4	4	0	0	1	1	NA	NA	NA	NA	NA	NA	0.910786427	0.910786427	1	1.23877193	1.23877193	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.53E-09	1	0.000298167	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	15764604	T	C	-	-	-	-	-	-	60	0	0	44	7	15.9	24	5	20.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.661749236	3	2	2	0	1	0.338250764	1	2	NA	1	NA	0.661749236	NA	0.739948667	0.739948667	1	2.032561404	2.032561404	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.55E-09	1	0.000000123	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	15779485	G	A	CD38	CCDS3417.1	r.?	-	-	upstream	43	0	0	26	10	38.5	20	2	10	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.661749236	3	2	2	0	1	0.338250764	1	2	NA	1	NA	0.661749236	NA	1.791699603	0.895849802	2	0.977192982	0.977192982	1	NA	NA	0	NA	NA	1	4	NA	1	1	4.82E-17	1	0.004473894	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	15784747	C	G	-	-	-	-	-	-	49	0	0	40	4	10	48	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.293868134	5.486552635	2	3	2	2	0.706131866	0.513447365	3	3	2	3	0.293868134	0.486552635	0.62858841	0.62858841	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	0.0000495	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	15881145	G	T	MYH11	CCDS45424.1	r.?	-	-	intronic	31	0	0	26	10	38.5	20	5	25	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.499724906	5.626372055	2	3	2	2	0.500275094	0.373627945	3	3	2	3	0.499724906	0.626372055	2.499320236	0.999838114	2.499724906	3.09957547	1.033191823	3	NA	NA	0	NA	NA	1	4	NA	1	1	4.82E-17	1	4.55E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	15973904	A	G	PROM1	CCDS47029.1	r.?	-	-	intronic	65	0	0	40	7	17.5	42	4	9.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.661749236	3	2	2	0	1	0.338250764	1	2	NA	1	NA	0.661749236	NA	0.814408911	0.814408911	1	0.928333333	0.928333333	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.26E-09	1	0.0000601	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	16002782	G	A	-	-	-	-	-	-	36	0	0	58	12	20.7	34	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.499724906	5.626372055	2	3	2	2	0.500275094	0.373627945	3	3	2	3	0.499724906	0.626372055	1.343790361	1.343790361	1	0	0	1	NA	NA	0	NA	NA	0	3	NA	1	1	1.76E-16	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	16009049	G	A	-	-	-	-	-	-	47	0	0	53	6	11.3	37	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	6.732316688	4.32434803	5	2	1	2	0.267683312	0.67565197	5	3	2	2	0.732316688	0.32434803	0.98584959	0.98584959	1	0	NA	0	NA	NA	0	NA	NA	0	NA	NA	1	1	0.000000293	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	16024864	G	T	-	-	-	-	-	-	46	0	0	49	37	75.5	46	8	17.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6.732316688	4.32434803	5	2	1	2	0.267683312	0.67565197	5	3	2	2	0.732316688	0.32434803	6.586871155	1.317374231	5	1.930752347	0.965376173	2	NA	NA	0	NA	NA	0	4	NA	1	1	6.33E-75	1	8.61E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	113288628	C	T	TTL	CCDS2096.1	r.3581c>u	c.?	p.?	3'UTR variant	50	0	0	50	9	18	33	3	9.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.128496294	4	2	2	2	2	0.871503706	1	3	NA	2	NA	0.128496294	NA	1.101692207	1.101692207	1	0.980245614	0.980245614	1	NA	NA	1	NA	NA	0	4	NA	1	1	4.07E-12	1	0.000609557	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	16030332	T	C	STRAP	CCDS8676.1	r.?	-	-	upstream	46	0	0	32	13	40.6	28	3	10.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	2.026758483	1.013379242	2	1.045596491	1.045596491	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.88E-22	1	0.000372895	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	16030847	C	A	PLEKHM2	CCDS44063.1	r.?	-	-	intronic	21	0	0	25	4	16	11	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	0.798722555	0.798722555	1	0	0	1	NA	NA	0	NA	NA	1	4	NA	1	1	0.00000727	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	16057351	G	C	-	-	-	-	-	-	55	0	0	42	11	26.2	33	4	12.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	4	4	0	0	1	1	NA	NA	NA	NA	NA	NA	1.569908184	1.569908184	1	1.303403509	1.303403509	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.81E-16	1	0.0000228	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	115694131	C	A	DPP10	CCDS46400.1	r.?	-	-	intronic	43	0	0	46	8	17.4	34	1	2.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.128496294	4	2	2	2	2	0.871503706	1	3	NA	2	NA	0.128496294	NA	1.064969134	1.064969134	1	0.312385965	0.312385965	1	NA	NA	0	NA	NA	0	4	NA	1	1	8.61E-11	1	0.156694864	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	16084465	A	T	PROM1	ENST00000505450	r.?	-	-	intronic	24	0	0	27	6	22.2	15	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.661749236	3	2	2	0	1	0.338250764	1	2	NA	1	NA	0.661749236	NA	1.033135875	1.033135875	1	0	0	1	NA	NA	0	NA	NA	1	4	NA	1	1	4.23E-09	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	116036873	C	G	DPP10	CCDS46400.1	r.?	-	-	intronic	43	0	0	59	21	35.6	46	9	19.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.128496294	4	2	2	2	2	0.871503706	1	3	NA	2	NA	0.128496294	NA	2.178902365	1.023681541	2.128496294	2.111298246	1.055649123	2	NA	NA	1	NA	NA	0	4	NA	1	1	2.06E-33	1	1.82E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	16179306	A	T	-	-	-	-	-	-	42	0	0	39	10	25.6	30	3	10	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.37044448	5	2	3	1	2	0.62955552	1	2	NA	2	NA	0.37044448	NA	1.372789875	1.372789875	1	1.177192982	1.177192982	1	NA	NA	0	NA	NA	1	4	NA	1	1	5.44E-15	1	0.000458697	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	16270993	T	C	-	-	-	-	-	-	50	0	0	31	10	32.3	37	6	16.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.612421158	1.612421158	1	1.583052632	1.583052632	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.94E-16	1	3.18E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	21	16280542	T	C	-	-	-	-	-	-	43	0	0	49	21	42.9	46	8	17.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.55136616	5	2	3	2	2	0.44863384	1	3	NA	2	NA	0.55136616	NA	2.807110933	1.100238365	2.55136616	2.048315789	1.024157895	2	NA	NA	0	NA	NA	1	4	NA	1	1	1.63E-35	1	8.61E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	116075342	C	T	DPP10	CCDS46400.1	r.?	-	-	intronic	55	0	0	42	14	33.3	28	3	10.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.128496294	4	2	2	2	2	0.871503706	1	3	NA	2	NA	0.128496294	NA	2.038130583	1.019065292	2	1.152596491	1.152596491	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.83E-22	1	0.000372895	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	16333231	G	A	-	-	-	-	-	-	41	0	0	56	6	10.7	26	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	6.732316688	4.32434803	5	2	1	2	0.267683312	0.67565197	5	3	2	2	0.732316688	0.32434803	0.933503594	0.933503594	1	0	NA	0	NA	NA	0	NA	NA	0	NA	NA	1	1	0.000000409	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	16340190	G	A	-	-	-	-	-	-	33	0	0	29	10	34.5	21	5	23.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	4	4	0	0	1	1	NA	NA	NA	NA	NA	NA	2.067245509	1.033622754	2	2.563719298	0.854573099	3	NA	NA	1	NA	NA	1	4	NA	1	1	1.79E-16	1	5.95E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	138431331	C	A	THSD7B	ENST00000409968	r.?	-	-	intronic	53	0	0	60	4	6.7	48	1	2.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	0.53546507	0.53546507	1	0.268210526	0.268210526	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.000243755	1	0.213845552	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	16400710	G	T	-	-	-	-	-	-	18	0	0	35	11	31.4	26	4	15.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1	2.620991218	1	2	0	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0.939493014	0.939493014	1	1.44650984	1.44650984	1	NA	NA	0	NA	NA	0	4	NA	1	1	1.82E-17	1	0.00000856	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	16409982	C	T	-	-	-	-	-	-	35	0	0	44	14	31.8	29	5	17.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	4	4	0	0	1	1	NA	NA	NA	NA	NA	NA	1.905461078	0.952730539	2	1.85277193	1.85277193	1	NA	NA	1	NA	NA	1	4	NA	1	1	6.10E-22	1	0.000000336	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	17	16450748	G	T	ZNF287	CCDS11179.2	r.?	-	-	downstream	45	0	0	34	20	58.8	34	9	26.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	3.601202326	2	3	0	0	1	0.398797674	NA	3	NA	1	NA	0.601202326	2.347305389	1.173652695	2	2.74888002	0.91629334	3	NA	NA	0	NA	NA	1	4	NA	1	1	1.24E-37	1	9.15E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	16461413	C	T	-	-	-	-	-	-	33	0	0	37	16	43.2	25	4	16	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	4	4	0	0	1	1	NA	NA	NA	NA	NA	NA	2.588550898	0.862850299	3	1.723508772	1.723508772	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.78E-27	1	0.00000727	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	16551522	C	G	KIF16B	CCDS13122.1	r.?	-	-	intronic	51	0	0	35	10	28.6	35	3	8.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	4.362325493	2	2	1	2	1	0.637674507	NA	3	NA	2	NA	0.362325493	1.427716567	1.427716567	1	0.957545957	0.957545957	1	NA	NA	0	NA	NA	0	4	NA	1	1	1.60E-15	1	0.000725791	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	16621455	A	C	ENSG00000205858	ENST00000401542	r.?	-	-	downstream	46	0	0	61	6	9.8	45	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	8	4.260310284	6	2	2	2	1	0.739689716	NA	3	NA	2	NA	0.260310284	0.979217565	0.979217565	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	0.000000685	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	16643432	T	C	LDB2	CCDS3420.1	r.?	-	-	intronic	40	0	0	40	12	30	27	3	11.1	0	0	NA	0	0	NA	2	0	0	1	TRUE	FALSE	2.661749236	3	2	2	0	1	0.338250764	1	2	NA	1	NA	0.661749236	NA	1.396129561	1.396129561	1	1.084684211	1.084684211	1	NA	NA	0	0	0	1	4	NA	1	1	1.20E-18	1	0.000334187	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	21	16645749	A	C	-	-	-	-	-	-	56	0	0	49	19	38.8	43	5	11.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.55136616	5	2	3	2	2	0.44863384	1	3	NA	2	NA	0.55136616	NA	2.538832266	0.995087379	2.55136616	1.36554386	1.36554386	1	NA	NA	0	NA	NA	1	4	NA	1	1	3.12E-31	1	0.00000257	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	16696908	G	A	-	-	-	-	-	-	45	0	0	35	7	20	37	4	10.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.998403194	0.998403194	1	1.055368421	1.055368421	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.65E-10	1	0.0000362	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	140916006	T	G	-	-	-	-	-	-	41	0	0	77	4	5.2	51	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	0.41558483	0.41558483	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.000632383	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	16772828	G	T	-	-	-	-	-	-	28	0	0	46	11	23.9	28	6	21.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.37044448	5	2	3	1	2	0.62955552	1	2	NA	2	NA	0.37044448	NA	1.281628047	1.281628047	1	2.519192982	0.839730994	3	NA	NA	0	NA	NA	1	4	NA	1	1	5.55E-16	1	5.36E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	16777431	C	T	-	-	-	-	-	-	38	0	0	74	23	31.1	31	7	22.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	8	4.260310284	6	2	2	2	1	0.739689716	NA	3	NA	2	NA	0.260310284	3.107516966	1.035838989	3	2.493286264	1.103072566	2.260310284	NA	NA	1	NA	NA	0	4	NA	1	1	7.70E-35	1	1.85E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	16777513	T	A	-	-	-	-	-	-	46	0	0	75	22	29.3	50	10	20	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	8	4.260310284	6	2	2	2	1	0.739689716	NA	3	NA	2	NA	0.260310284	2.927660679	0.975886893	3	2.206448022	0.976170412	2.260310284	NA	NA	1	NA	NA	0	4	NA	1	1	9.55E-33	1	8.36E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	16854590	C	T	-	-	-	-	-	-	63	0	0	47	17	36.2	38	9	23.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.37044448	5	2	3	1	2	0.62955552	1	2	NA	2	NA	0.37044448	NA	1.941210682	0.970605341	2	2.789947368	0.929982456	3	NA	NA	0	NA	NA	1	4	NA	1	1	1.81E-27	1	2.79E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	16862402	G	A	AGR2	ENST00000412973	r.?	-	-	intronic	54	0	0	63	15	23.8	32	14	43.8	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	NA	4.260310284	NA	2	NA	2	NA	0.739689716	NA	3	NA	2	NA	0.260310284	NA	NA	1	4.832121167	2.137813203	2.260310284	NA	NA	1	NA	NA	0	NA	NA	1	1	2.97E-21	1	2.65E-24	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	16889259	A	G	-	-	-	-	-	-	48	0	0	37	14	37.8	31	5	16.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.886982036	0.943491018	2	1.573280702	1.573280702	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.35E-23	1	0.000000476	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	16909519	C	A	PLEKHA7	CCDS31434.1	r.?	-	-	intronic	11	0	0	33	4	12.1	10	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.604033932	0.604033932	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.0000228	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	16919409	A	C	-	-	-	-	-	-	50	1	2	25	9	36	21	1	4.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1	1	1	1	0	0	1	1	NA	NA	NA	NA	NA	NA	1.077125749	1.077125749	1	0.373052632	0.373052632	1	NA	NA	1	NA	NA	1	4	NA	0.221687443	1	3.71E-15	1	0.099912572	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	16921607	G	A	-	-	-	-	-	-	42	0	0	51	18	35.3	29	7	24.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.293868134	5.486552635	2	3	2	2	0.706131866	0.513447365	3	3	2	3	0.293868134	0.486552635	2.218917088	0.967325477	2.293868134	2.954294273	0.984764758	3	NA	NA	0	NA	NA	0	4	NA	1	1	9.10E-29	1	1.11E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	16973442	C	A	-	-	-	-	-	-	13	0	0	37	14	37.8	25	4	16	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.886982036	0.943491018	2	1.563508772	1.563508772	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.35E-23	1	0.00000727	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	17023033	C	T	-	-	-	-	-	-	47	1	2.1	44	23	52.3	28	6	21.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.661749236	3	2	2	0	1	0.338250764	1	2	NA	1	NA	0.661749236	NA	2.433919201	1.216959601	2	2.091192982	2.091192982	1	NA	NA	0	NA	NA	1	4	NA	0.209895027	1	2.17E-41	1	5.36E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	17109170	T	G	-	-	-	-	-	-	46	0	0	45	15	33.3	32	4	12.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.499724906	5.626372055	2	3	2	2	0.500275094	0.373627945	3	3	2	3	0.499724906	0.626372055	2.161749711	1.080874856	2	1.549787735	1.549787735	1	NA	NA	0	NA	NA	0	4	NA	1	1	9.14E-24	1	0.0000201	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	17144229	G	A	-	-	-	-	-	-	37	0	0	43	7	16.3	30	4	13.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	4.362325493	2	2	1	2	1	0.637674507	NA	3	NA	2	NA	0.362325493	0.813698603	0.813698603	1	1.480855957	1.480855957	1	NA	NA	0	NA	NA	0	4	NA	1	1	2.15E-09	1	0.0000154	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	17174353	A	G	CUBN	CCDS7113.1	r.?	-	-	upstream	51	0	0	51	11	21.6	23	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.862275449	0.862275449	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	1.94E-15	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	21	17182327	G	T	USP25	CCDS33515.1	r.?	-	-	intronic	56	0	0	69	6	8.7	46	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.55136616	5	2	3	2	2	0.44863384	1	3	NA	2	NA	0.55136616	NA	0.569274245	0.569274245	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	0.00000143	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	142578933	C	A	LRP1B	CCDS2182.1	r.?	-	-	intronic	48	0	0	57	5	8.8	24	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.527297405	0.527297405	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.0000105	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	17221686	C	T	PCSK2	CCDS13125.1	r.?	-	-	intronic	64	0	0	40	7	17.5	41	12	29.3	153	0	0	294	59	20.1	280	52	18.6	1.49E-48	TRUE	TRUE	3	4.362325493	2	2	1	2	1	0.637674507	NA	3	NA	2	NA	0.362325493	0.873602794	0.873602794	1	3.262336808	1.380985312	2.362325493	1.00339521	1.00339521	1	2.070971489	1.035485745	2	4	3	1	1	1.26E-09	3.26E-74	1.69E-18	1.02E-63	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	8	17226775	T	G	MTMR7	CCDS34851.1	r.?	-	-	intronic	44	0	0	30	10	33.3	18	3	16.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1	2.620991218	1	2	0	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0.996341317	0.996341317	1	1.568617814	1.568617814	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.68E-16	1	0.0000964	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	142857371	T	A	LRP1B	CCDS2182.1	r.?	-	-	intronic	48	0	0	49	18	36.7	30	6	20	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.19906986	1.09953493	2	2.154385965	1.077192982	2	NA	NA	1	NA	NA	1	4	NA	1	1	3.80E-29	1	8.37E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	152986926	C	T	STAM2	CCDS2196.1	r.?	-	-	intronic	13	0	0	37	14	37.8	30	5	16.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.264982036	1.132491018	2	1.798912281	1.798912281	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.35E-23	1	0.000000401	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	17365978	G	A	-	-	-	-	-	-	33	0	0	60	5	8.3	27	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	6	4.32434803	3	2	3	2	1	0.67565197	NA	3	NA	2	NA	0.32434803	0.663337325	0.663337325	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	0.0000136	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	17367245	G	A	XYLT1	CCDS10569.1	r.?	-	-	intronic	28	0	0	28	8	28.6	34	3	8.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.499724906	5.626372055	2	3	2	2	0.500275094	0.373627945	3	3	2	3	0.499724906	0.626372055	1.85663789	0.928318945	2	1.091050565	1.091050565	1	NA	NA	0	NA	NA	0	4	NA	1	1	1.11E-12	1	0.000666058	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	153557871	C	T	PRPF40A	CCDS46430.1	r.?	-	-	intronic	49	0	0	48	7	14.6	33	7	21.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.874834331	0.874834331	1	2.283649123	1.141824561	2	NA	NA	1	NA	NA	1	4	NA	1	1	4.81E-09	1	2.98E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	17389631	C	T	-	-	-	-	-	-	45	0	0	53	25	47.2	40	6	15	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	4	4	0	0	1	1	NA	NA	NA	NA	NA	NA	2.828231537	0.942743846	3	1.615789474	1.615789474	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.35E-43	1	5.18E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	17424714	G	A	DDA1	CCDS12357.1	r.?	-	-	intronic	27	0	0	37	16	43.2	30	6	20	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5.384331439	2	3	1	2	1	0.615668561	NA	4	NA	2	NA	0.384331439	2.156550898	1.078275449	2	2.431252253	1.019678814	2.384331439	NA	NA	0	NA	NA	0	4	NA	1	1	1.78E-27	1	8.37E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	154228988	C	T	-	-	-	-	-	-	33	0	0	29	16	55.2	29	5	17.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	3.307592814	1.653796407	2	1.85277193	1.85277193	1	NA	NA	1	NA	NA	1	4	NA	1	1	9.74E-30	1	0.000000336	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	158478421	T	A	ACVR1C	CCDS2205.1	r.?	-	-	intronic	45	0	0	51	18	35.3	35	5	14.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.115181637	1.057590818	2	1.540385965	1.540385965	1	NA	NA	1	NA	NA	1	4	NA	1	1	9.10E-29	1	0.000000895	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	17574705	C	T	-	-	-	-	-	-	19	0	0	39	14	35.9	30	5	16.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.293868134	5.486552635	2	3	2	2	0.706131866	0.513447365	3	3	2	3	0.293868134	0.486552635	2.256632393	0.98376727	2.293868134	2.047166571	2.047166571	1	NA	NA	0	NA	NA	1	4	NA	1	1	8.19E-23	1	0.000000401	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	17611102	C	T	PADI3	CCDS179.1	r.?	-	-	downstream	24	0	0	35	8	22.9	30	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.143171657	1.143171657	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	8.15E-12	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	17641639	C	T	-	-	-	-	-	-	64	0	0	53	27	50.9	46	10	21.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	2.540936128	1.270468064	2	2.120508772	1.060254386	2	NA	NA	1	NA	NA	1	4	NA	1	1	6.40E-48	1	3.38E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	22	17647965	G	C	CECR5	CCDS13741.1	r.?	-	-	upstream	30	0	0	38	9	23.7	25	0	0	221	0	0	82	31	37.8	89	0	0	1	TRUE	TRUE	3.292921926	5	3	4	0	1	0.707078074	1	3	NA	1	NA	0.292921926	NA	1.252530281	1.252530281	1	0	0	1	1.997706524	0.998853262	2	0	0	1	4	2	1	1	2.79E-13	1.35E-49	1	1	YES	1_1	0_0	somatic	custom.pulldown.HiSeq
PD9852b	17	17673004	C	T	RAI1	CCDS11188.1	r.?	-	-	intronic	14	0	0	28	12	42.9	9	4	44.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	3.601202326	2	3	0	0	1	0.398797674	NA	3	NA	1	NA	0.601202326	1.71257485	0.856287425	2	4.605670675	1.535223558	3	NA	NA	0	NA	NA	1	4	NA	1	1	6.90E-21	1	7.72E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	17726289	G	A	-	-	-	-	-	-	52	0	0	46	7	15.2	37	1	2.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.758786427	0.758786427	1	0.263842105	0.263842105	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.53E-09	1	0.169281299	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	21	17825159	G	A	-	-	-	-	-	-	52	0	0	48	16	33.3	38	8	21.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.55136616	5	2	3	2	2	0.44863384	1	3	NA	2	NA	0.55136616	NA	2.178946249	1.089473124	2	2.483877193	0.827959064	3	NA	NA	0	NA	NA	1	4	NA	1	1	2.96E-25	1	1.67E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	17849855	G	C	AL390994.1	ENST00000509615	r.?	-	-	intronic	33	0	0	46	10	21.7	27	2	7.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.083267465	1.083267465	1	0.871122807	0.871122807	1	NA	NA	0	NA	NA	1	4	NA	1	1	3.38E-14	1	0.00807567	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	17894524	A	G	-	-	-	-	-	-	49	0	0	18	5	27.8	24	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1	1	1	1	0	0	1	1	NA	NA	NA	NA	NA	NA	0.831780439	0.831780439	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	2.54E-08	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	17941165	T	G	KIF13A	CCDS47380.1	r.?	-	-	intronic	39	0	0	55	6	10.9	36	3	8.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.293868134	5.486552635	2	3	2	2	0.706131866	0.513447365	3	3	2	3	0.293868134	0.486552635	0.685161367	0.685161367	1	1.017454044	1.017454044	1	NA	NA	0	NA	NA	0	4	NA	1	1	0.000000367	1	0.000788827	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	18063020	C	A	TPH1	CCDS7829.1	r.?	-	-	upstream	57	0	0	48	9	18.8	38	4	10.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.938499002	0.938499002	1	1.026052632	1.026052632	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.75E-12	1	0.0000403	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	18162086	C	G	AC139618.1	ENST00000448265	r.?	-	-	intronic	44	0	0	38	11	28.9	38	4	10.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.37044448	5	2	3	1	2	0.62955552	1	2	NA	2	NA	0.37044448	NA	1.549751069	1.549751069	1	1.236052632	1.236052632	1	NA	NA	0	NA	NA	1	4	NA	1	1	5.19E-17	1	0.0000403	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	18201888	G	A	-	-	-	-	-	-	42	0	0	41	21	51.2	31	7	22.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	4.362325493	2	2	1	2	1	0.637674507	NA	3	NA	2	NA	0.362325493	2.555912176	1.277956088	2	2.516341702	1.065196862	2.362325493	NA	NA	0	NA	NA	1	4	NA	1	1	1.17E-37	1	1.85E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	168263860	A	G	-	-	-	-	-	-	32	0	0	39	17	43.6	36	9	25	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.612518962	1.306259481	2	2.692982456	1.346491228	2	NA	NA	1	NA	NA	1	4	NA	1	1	3.51E-29	1	1.63E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	172379959	G	T	CYBRD1	CCDS2244.1	r.?	-	-	intronic	15	0	0	66	9	13.6	13	1	7.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.814914172	0.814914172	1	0.829438596	0.829438596	1	NA	NA	1	NA	NA	1	4	NA	1	1	5.59E-11	1	0.063085307	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	18254471	C	A	-	-	-	-	-	-	54	0	0	40	5	12.5	38	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.499001996	0.499001996	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.00000178	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	18264039	G	C	HDAC9	ENST00000433709	r.?	-	-	intronic	61	0	0	67	22	32.8	65	9	13.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5	4.260310284	3	2	2	2	1	0.739689716	NA	3	NA	2	NA	0.260310284	2.293381238	1.146690619	2	1.522449135	1.522449135	1	NA	NA	1	NA	NA	0	4	NA	1	1	5.21E-34	1	4.85E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	18292301	C	A	-	-	-	-	-	-	54	0	0	45	6	13.3	36	3	8.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.499724906	5.626372055	2	3	2	2	0.500275094	0.373627945	3	3	2	3	0.499724906	0.626372055	0.863401536	0.863401536	1	1.029059056	1.029059056	1	NA	NA	0	NA	NA	0	4	NA	1	1	0.000000108	1	0.000788827	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	18313789	C	T	HDAC9	ENST00000433709	r.?	-	-	intronic	59	0	0	50	12	24	41	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	5	4.260310284	3	2	2	2	1	0.739689716	NA	3	NA	2	NA	0.260310284	1.678083832	0.839041916	2	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	2.49E-17	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	18346469	A	C	-	-	-	-	-	-	63	1	1.6	34	11	32.4	32	7	21.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.37044448	5	2	3	1	2	0.62955552	1	2	NA	2	NA	0.37044448	NA	1.737437185	1.066203123	1.62955552	2.578052632	0.859350877	3	NA	NA	0	NA	NA	1	4	NA	0.27078753	1	1.26E-17	1	2.36E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	18383173	C	T	RNF144B	CCDS34345.1	r.?	-	-	upstream	38	0	0	42	12	28.6	25	5	20	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.293868134	5.486552635	2	3	2	2	0.706131866	0.513447365	3	3	2	3	0.293868134	0.486552635	1.797762853	0.898881427	2	2.451696492	0.975431802	2.513447365	NA	NA	0	NA	NA	0	4	NA	1	1	2.35E-18	1	0.000000153	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	175982291	G	A	ATF2	CCDS2262.1	r.?	-	-	intronic	39	0	0	36	15	41.7	31	9	29	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.498670659	1.249335329	2	3.123859649	1.561929825	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.54E-25	1	3.57E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	21	18408351	G	A	-	-	-	-	-	-	58	0	0	48	14	29.2	41	8	19.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.55136616	5	2	3	2	2	0.44863384	1	3	NA	2	NA	0.55136616	NA	1.910667581	0.955333791	2	2.295526316	1.147763158	2	NA	NA	0	NA	NA	1	4	NA	1	1	2.51E-21	1	3.22E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	18497074	G	T	CDKL5	CCDS14186.1	r.?	-	-	intronic	24	0	0	58	9	15.5	28	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	7.364463357	4.32434803	5	2	2	2	0.635536643	0.67565197	6	3	2	2	0.364463357	0.32434803	1.450254295	1.450254295	1	0	NA	0	NA	NA	0	NA	NA	0	NA	NA	1	1	1.67E-11	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	18508066	C	A	CACNB2	CCDS7127.1	r.?	-	-	intronic	52	0	0	25	6	24	28	4	14.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.958083832	0.958083832	1	1.254385965	1.254385965	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.55E-09	1	0.0000116	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	18508067	C	A	CACNB2	CCDS7127.1	r.?	-	-	intronic	52	0	0	24	5	20.8	27	4	14.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.830339321	0.830339321	1	1.298245614	1.298245614	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.000000123	1	0.00001	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	18543756	G	C	HDAC9	CCDS47554.1	r.?	-	-	intronic	48	0	0	78	15	19.2	36	3	8.3	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	NA	4.260310284	NA	2	NA	2	NA	0.739689716	NA	3	NA	2	NA	0.260310284	NA	NA	1	0.915675929	0.915675929	1	NA	NA	1	NA	NA	0	NA	NA	1	1	9.92E-20	1	0.000788827	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	18544031	G	A	HDAC9	CCDS47554.1	r.?	-	-	intronic	48	0	0	86	21	24.4	40	2	5	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	NA	4.260310284	NA	2	NA	2	NA	0.739689716	NA	3	NA	2	NA	0.260310284	NA	NA	1	0.551612005	0.551612005	1	NA	NA	1	NA	NA	0	NA	NA	1	1	2.01E-29	1	0.017193422	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	17	18558247	C	T	-	-	-	-	-	-	31	0	0	17	7	41.2	21	2	9.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	3.601202326	2	3	0	0	1	0.398797674	NA	3	NA	1	NA	0.601202326	1.644710579	1.644710579	1	0.985447554	0.985447554	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.45E-12	1	0.004928472	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	18716829	C	T	-	-	-	-	-	-	66	0	0	28	6	21.4	29	3	10.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.661749236	3	2	2	0	1	0.338250764	1	2	NA	1	NA	0.661749236	NA	0.995905754	0.995905754	1	1.006508772	1.006508772	1	NA	NA	0	NA	NA	1	4	NA	1	1	5.36E-09	1	0.000414371	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	47531983	C	A	-	-	-	-	-	-	53	0	0	53	10	18.9	31	5	16.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	1.510491018	1.510491018	1	2.056280702	2.056280702	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.57E-13	1	0.000000476	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	178138262	T	A	-	-	-	-	-	-	42	0	0	47	15	31.9	39	7	17.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.911453094	0.955726547	2	1.928175439	1.928175439	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.97E-23	1	1.04E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	18755967	G	T	NT5C1B	CCDS33149.1	r.?	-	-	intronic	44	0	0	46	23	50	31	8	25.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	4	4	0	0	1	1	NA	NA	NA	NA	NA	NA	2.996007984	0.998669328	3	2.779157895	0.926385965	3	NA	NA	1	NA	NA	1	4	NA	1	1	8.79E-41	1	2.78E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	18758902	C	T	CACNB2	CCDS7128.1	r.?	-	-	intronic	34	0	0	36	19	52.8	33	13	39.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.107784431	1.053892216	2	3.456140351	1.728070175	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.51E-34	1	6.37E-22	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	18797423	G	A	-	-	-	-	-	-	34	0	0	30	13	43.3	27	7	25.9	0	0	NA	0	0	NA	2	0	0	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.728542914	0.864271457	2	2.271929825	1.135964912	2	NA	NA	1	0	0	1	4	NA	1	1	1.35E-22	1	6.36E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	18803274	G	A	PPEF1	CCDS14188.1	r.?	-	-	intronic	51	0	0	100	65	65	38	10	26.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7.364463357	4.32434803	5	2	2	2	0.635536643	0.67565197	6	3	2	2	0.364463357	0.32434803	6.081711561	1.133703626	5.364463357	2.918321076	1.255543937	2.32434803	NA	NA	1	NA	NA	0	4	NA	1	1	2.50E-123	1	4.06E-15	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	21	18809019	T	G	C21orf37	ENST00000440664	r.?	-	-	upstream	45	0	0	45	7	15.6	36	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.55136616	5	2	3	2	2	0.44863384	1	3	NA	2	NA	0.55136616	NA	1.020767612	1.020767612	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	0.000000003	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	18822433	C	T	HDAC9	CCDS47554.1	r.?	-	-	intronic	59	0	0	85	11	12.9	45	9	20	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7.505836279	4.260310284	5	2	2	2	0.494163721	0.739689716	6	3	2	2	0.505836279	0.260310284	1.22522294	1.22522294	1	2.206448022	0.976170412	2.260310284	NA	NA	0	NA	NA	0	4	NA	1	1	7.42E-13	1	1.47E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	18866108	C	T	-	-	-	-	-	-	50	0	0	23	5	21.7	35	1	2.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.661749236	3	2	2	0	1	0.338250764	1	2	NA	1	NA	0.661749236	NA	1.009867049	1.009867049	1	0.283385965	0.283385965	1	NA	NA	0	NA	NA	1	4	NA	1	1	9.75E-08	1	0.16091139	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	19007791	A	G	GREB1L	CCDS45836.1	r.?	-	-	intronic	40	0	0	27	7	25.9	18	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	3	2	3	0	0	1	1	NA	NA	NA	NA	NA	NA	1.033932136	1.033932136	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	6.36E-11	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	19018296	G	A	-	-	-	-	-	-	44	0	0	36	17	47.2	38	8	21.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.661749236	3	2	2	0	1	0.338250764	1	2	NA	1	NA	0.661749236	NA	2.196577176	1.098288588	2	2.061877193	1.030938596	2	NA	NA	0	NA	NA	1	4	NA	1	1	6.00E-30	1	1.67E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	21	19042349	C	G	-	-	-	-	-	-	50	0	0	51	8	15.7	38	7	18.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.55136616	5	2	3	2	2	0.44863384	1	3	NA	2	NA	0.55136616	NA	1.027310994	1.027310994	1	2.166035088	1.083017544	2	NA	NA	0	NA	NA	1	4	NA	1	1	2.05E-10	1	8.61E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	19071969	G	A	-	-	-	-	-	-	43	0	0	36	6	16.7	24	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.37044448	5	2	3	1	2	0.62955552	1	2	NA	2	NA	0.37044448	NA	0.895530895	0.895530895	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	2.68E-08	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	19073871	G	A	GPR64	CCDS43923.1	r.?	-	-	intronic	30	0	0	75	7	9.3	30	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	7.364463357	4.32434803	5	2	2	2	0.635536643	0.67565197	6	3	2	2	0.364463357	0.32434803	0.870152577	0.870152577	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	0.000000115	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	19074120	G	A	GPR64	CCDS43923.1	r.?	-	-	intronic	40	0	0	82	7	8.5	37	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	7.364463357	4.32434803	5	2	2	2	0.635536643	0.67565197	6	3	2	2	0.364463357	0.32434803	0.795300743	0.795300743	1	0	NA	0	NA	NA	0	NA	NA	0	NA	NA	1	1	0.000000214	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	178300305	T	A	AGPS	CCDS2275.1	r.?	-	-	intronic	49	0	0	58	19	32.8	38	6	15.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.965381238	0.982690619	2	1.701964912	1.701964912	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.50E-29	1	3.76E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	19074353	G	C	GPR64	CCDS43923.1	r.?	-	-	intronic	47	0	0	101	5	5	33	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	7.364463357	4.32434803	5	2	2	2	0.635536643	0.67565197	6	3	2	2	0.364463357	0.32434803	0.467823966	1.283596712	0.364463357	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	0.000166173	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	19092101	T	A	-	-	-	-	-	-	77	0	0	41	4	9.8	67	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.391217565	0.391217565	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.0000546	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	19096793	G	A	-	-	-	-	-	-	45	0	0	25	4	16	40	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	4.362325493	2	2	1	2	1	0.637674507	NA	3	NA	2	NA	0.362325493	0.798722555	0.798722555	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	0.00000727	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	19104033	T	C	-	-	-	-	-	-	34	0	0	71	17	23.9	40	3	7.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7.505836279	4.260310284	5	2	2	2	0.494163721	0.739689716	6	3	2	2	0.505836279	0.260310284	2.269986687	0.905879888	2.505836279	0.827418008	0.827418008	1	NA	NA	1	NA	NA	0	4	NA	1	1	6.12E-24	1	0.001075403	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	21	19173707	C	A	C21orf91	CCDS42907.1	r.?	-	-	intronic	16	0	0	48	13	27.1	20	2	10	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.55136616	5	2	3	2	2	0.44863384	1	3	NA	2	NA	0.55136616	NA	1.773256557	0.886628278	2	1.177192982	1.177192982	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.00E-19	1	0.004473894	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	19175062	C	T	-	-	-	-	-	-	26	0	0	30	18	60	16	4	25	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.395209581	1.19760479	2	2.192982456	2.192982456	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.12E-34	1	0.00000108	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	19211925	C	T	CSRP3	CCDS7848.1	r.?	-	-	intronic	44	0	0	52	15	28.8	28	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.437700599	1.437700599	1	0	0	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.15E-22	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	19242920	G	T	-	-	-	-	-	-	29	0	0	43	11	25.6	16	4	25	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.277956088	1.277956088	1	2.442982456	2.442982456	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.42E-16	1	0.00000108	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	22	19263235	T	A	ENSG00000249108	ENST00000505027	r.161a>u	c.161A>T	p.D54V	missense	34	0	0	22	14	63.6	15	4	26.7	268	0	0	154	61	39.6	172	34	19.8	2.72E-33	TRUE	TRUE	3.292921926	5	3	4	0	1	0.707078074	1	3	NA	1	NA	0.292921926	NA	3.3612205	1.120406833	3	3.143105263	1.047701754	3	2.092835406	1.046417703	2	2.330842105	1.165421053	2	4	3	1	1	1.88E-27	1.44E-97	0.000000816	3.11E-43	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	13	19277182	G	T	-	-	-	-	-	-	40	0	0	22	8	36.4	20	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.453093812	1.453093812	1	0	0	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.17E-13	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	19287318	T	A	-	-	-	-	-	-	42	0	0	79	18	22.8	50	8	16	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7.505836279	4.260310284	5	2	2	2	0.494163721	0.739689716	6	3	2	2	0.505836279	0.260310284	2.165510312	1.082755156	2	1.765158417	1.765158417	1	NA	NA	1	NA	NA	0	4	NA	1	1	7.86E-25	1	1.74E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	19288025	C	A	-	-	-	-	-	-	56	0	0	83	5	6	38	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	7.505836279	4.260310284	5	2	2	2	0.494163721	0.739689716	6	3	2	2	0.505836279	0.260310284	0.569871135	0.569871135	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	0.0000656	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	19321177	C	T	NCAN	CCDS12397.1	r.?	-	-	upstream	26	0	0	28	5	17.9	31	1	3.2	2	0	0	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5.384331439	2	3	1	2	1	0.615668561	NA	4	NA	2	NA	0.384331439	0.893570858	0.893570858	1	0.38900036	0.38900036	1	NA	NA	0	NA	NA	0	4	NA	1	1	0.000000279	1	0.143917729	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	179300185	G	T	PRKRAP1	CCDS46460.1	r.?	-	-	intronic	51	0	0	49	6	12.2	31	1	3.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.731025948	0.731025948	1	0.344701754	0.344701754	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.000000182	1	0.143917729	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	21	19334147	A	G	CHODL	ENST00000400128	r.?	-	-	intronic	54	0	0	59	11	18.6	50	4	8	1	0	0	0	0	NA	0	0	NA	1	TRUE	FALSE	4.55136616	5	2	3	2	2	0.44863384	1	3	NA	2	NA	0.55136616	NA	1.217069076	1.217069076	1	0.941754386	0.941754386	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.10E-14	1	0.000119787	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	21	19342311	C	T	CHODL	ENST00000400128	r.?	-	-	intronic	38	0	0	56	15	26.8	41	11	26.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.55136616	5	2	3	2	2	0.44863384	1	3	NA	2	NA	0.55136616	NA	1.75362641	0.876813205	2	3.154877193	1.051625731	3	NA	NA	0	NA	NA	1	4	NA	1	1	4.09E-22	1	1.34E-16	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	19343688	G	C	-	-	-	-	-	-	61	0	0	33	7	21.2	22	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.661749236	3	2	2	0	1	0.338250764	1	2	NA	1	NA	0.661749236	NA	0.986598223	0.986598223	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	2.98E-10	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	179642147	C	A	TTN	ENST00000356127	r.4870g>u	c.4645G>T	p.A1549S	missense	46	0	0	42	8	19	32	1	3.1	156	0	0	145	25	17.2	158	3	1.9	0.210939429	TRUE	TRUE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.138483034	1.138483034	1	0.333929825	0.333929825	1	1.030626747	1.030626747	1	0.204666667	0.204666667	1	4	2	1	1	3.96E-11	1.30E-30	0.14819814	0.045565502	YES	1_1	0_1	somatic	custom.pulldown.HiSeq
PD9852b	7	19465754	C	T	-	-	-	-	-	-	44	0	0	75	26	34.7	42	10	23.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7.505836279	4.260310284	5	2	2	2	0.494163721	0.739689716	6	3	2	2	0.505836279	0.260310284	3.29575473	0.940076623	3.505836279	2.625673146	1.161642791	2.260310284	NA	NA	1	NA	NA	0	4	NA	1	1	1.19E-40	1	1.24E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	19479289	G	T	-	-	-	-	-	-	49	0	0	74	6	8.1	36	1	2.8	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	7.505836279	4.260310284	5	2	2	2	0.494163721	0.739689716	6	3	2	2	0.505836279	0.260310284	0.769326032	0.769326032	1	0.308902723	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	0.00000216	1	0.165106833	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	19501184	C	T	TMC5	CCDS45431.1	r.?	-	-	intronic	39	0	0	40	10	25	29	4	13.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.499724906	5.626372055	2	3	2	2	0.500275094	0.373627945	3	3	2	3	0.499724906	0.626372055	1.622935218	1.622935218	1	1.710965659	1.710965659	1	NA	NA	0	NA	NA	0	4	NA	1	1	7.22E-15	1	0.0000134	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	19524021	G	A	-	-	-	-	-	-	45	0	0	18	4	22.2	29	3	10.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.661749236	3	2	2	0	1	0.338250764	1	2	NA	1	NA	0.661749236	NA	1.033135875	1.033135875	1	1.006508772	1.006508772	1	NA	NA	0	NA	NA	1	4	NA	1	1	0.00000181	1	0.000414371	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	19581304	T	C	SLC24A3	CCDS13140.1	r.?	-	-	intronic	53	0	0	46	7	15.2	41	3	7.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	4.362325493	2	2	1	2	1	0.637674507	NA	3	NA	2	NA	0.362325493	0.758786427	0.758786427	1	0.812800638	0.812800638	1	NA	NA	0	NA	NA	0	4	NA	1	1	3.53E-09	1	0.001155993	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	19656799	G	C	C16orf62	CCDS32397.1	r.?	-	-	intronic	13	0	0	47	20	42.6	26	9	34.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.499724906	5.626372055	2	3	2	2	0.500275094	0.373627945	3	3	2	3	0.499724906	0.626372055	2.765481612	1.106314381	2.499724906	4.28981245	1.429937483	3	NA	NA	0	NA	NA	1	4	NA	1	1	8.18E-34	1	5.65E-15	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	19675569	C	A	-	-	-	-	-	-	50	0	0	98	55	56.1	43	7	16.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7.505836279	4.260310284	5	2	2	2	0.494163721	0.739689716	6	3	2	2	0.505836279	0.260310284	5.328295111	0.967754005	5.505836279	1.798255138	1.798255138	1	NA	NA	1	NA	NA	0	4	NA	1	1	2.76E-99	1	2.15E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	19702826	G	T	SH3KBP1	CCDS14193.1	r.?	-	-	intronic	49	0	0	78	12	15.4	29	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	7.364463357	4.32434803	5	2	2	2	0.635536643	0.67565197	6	3	2	2	0.364463357	0.32434803	1.440897816	1.440897816	1	0	NA	0	NA	NA	0	NA	NA	0	NA	NA	1	1	7.82E-15	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	180324789	C	A	ZNF385B	CCDS33339.1	r.?	-	-	intronic	29	0	0	63	28	44.4	33	4	12.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.66045509	1.330227545	2	1.303403509	1.303403509	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.98E-47	1	0.0000228	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	21	19776210	G	T	PRSS7	CCDS13571.1	r.?	-	-	upstream	57	0	0	55	7	12.7	45	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.55136616	5	2	3	2	2	0.44863384	1	3	NA	2	NA	0.55136616	NA	0.83100953	0.83100953	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	1.28E-08	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	181651922	G	A	-	-	-	-	-	-	58	0	0	59	20	33.9	39	6	15.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.031293413	1.015646707	2	1.658877193	1.658877193	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.21E-31	1	4.43E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	19795960	C	G	-	-	-	-	-	-	146	0	0	74	14	18.9	82	4	4.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.754491018	0.754491018	1	0.429824561	0.429824561	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.10E-18	1	0.000801325	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	19837368	T	C	ZNF14	CCDS12409.1	r.?	-	-	intronic	31	0	0	47	6	12.8	35	5	14.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5.384331439	2	3	1	2	1	0.615668561	NA	4	NA	2	NA	0.384331439	0.638978044	0.638978044	1	1.738345361	1.738345361	1	NA	NA	0	NA	NA	1	4	NA	1	1	0.000000141	1	0.000000895	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	22	19863047	C	T	TXNRD2	CCDS42981.1	r.1931g>a	c.?	p.?	3'UTR variant	13	0	0	31	16	51.6	15	2	13.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.292921926	5	3	4	0	1	0.707078074	1	3	NA	1	NA	0.292921926	NA	2.727027953	1.007369525	2.707078074	1.565666667	1.565666667	1	NA	NA	0	NA	NA	1	4	NA	1	1	4.27E-29	1	0.002513772	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	19909670	C	T	-	-	-	-	-	-	50	0	0	37	9	24.3	34	2	5.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.661749236	3	2	2	0	1	0.338250764	1	2	NA	1	NA	0.661749236	NA	1.130864944	1.130864944	1	0.57654386	0.57654386	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.14E-13	1	0.012612579	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	182632146	G	A	-	-	-	-	-	-	46	0	0	43	11	25.6	41	2	4.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.533956088	1.533956088	1	0.527824561	0.527824561	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.42E-16	1	0.018015855	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	19955112	A	G	-	-	-	-	-	-	46	0	0	51	20	39.2	38	15	39.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	4	4	0	0	1	1	NA	NA	NA	NA	NA	NA	2.348870259	1.17443513	2	4.254912281	1.06372807	4	NA	NA	1	NA	NA	1	4	NA	1	1	6.38E-33	1	4.24E-25	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	19963264	C	T	RIN2	ENST00000255006	r.?	-	-	intronic	33	0	0	34	6	17.6	29	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	4.362325493	2	2	1	2	1	0.637674507	NA	3	NA	2	NA	0.362325493	0.87859481	0.87859481	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	1.86E-08	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	17	20003888	G	A	CYTSB	CCDS42280.1	r.?	-	-	intronic	61	0	0	33	7	21.2	28	4	14.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	3.601202326	2	3	0	0	1	0.398797674	NA	3	NA	1	NA	0.601202326	0.846307385	0.846307385	1	1.483357898	1.483357898	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.98E-10	1	0.0000116	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	20063652	T	C	-	-	-	-	-	-	51	0	0	47	5	10.6	30	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.293868134	5.486552635	2	3	2	2	0.706131866	0.513447365	3	3	2	3	0.293868134	0.486552635	0.666303715	0.666303715	1	0	0	1	NA	NA	0	NA	NA	0	3	NA	1	1	0.00000402	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	20064542	G	A	GPR139	CCDS32398.1	r.?	-	-	intronic	47	0	0	47	16	34	38	10	26.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.499724906	5.626372055	2	3	2	2	0.500275094	0.373627945	3	3	2	3	0.499724906	0.626372055	2.207191897	1.103595949	2	3.260753394	1.086917798	3	NA	NA	0	NA	NA	1	4	NA	1	1	1.98E-25	1	4.06E-15	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	20083800	A	G	-	-	-	-	-	-	17	0	0	46	20	43.5	38	3	7.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	4	4	0	0	1	1	NA	NA	NA	NA	NA	NA	2.606526946	0.868842315	3	0.850982456	0.850982456	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.72E-34	1	0.000925091	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	20087274	T	C	-	-	-	-	-	-	56	0	0	52	19	36.5	50	10	20	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.293868134	5.486552635	2	3	2	2	0.706131866	0.513447365	3	3	2	3	0.293868134	0.486552635	2.294347697	1.000209063	2.293868134	2.451696492	0.975431802	2.513447365	NA	NA	0	NA	NA	1	4	NA	1	1	1.24E-30	1	8.36E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	20200477	A	G	MACC1	CCDS5369.1	r.?	-	-	intronic	58	0	0	82	27	32.9	37	6	16.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7.505836279	4.260310284	5	2	2	2	0.494163721	0.739689716	6	3	2	2	0.505836279	0.260310284	3.124793389	1.041597796	3	1.787222898	1.787222898	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.96E-41	1	3.18E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	17	20211401	A	G	CYTSB	CCDS32590.1	r.?	-	-	intronic	40	0	0	28	13	46.4	38	9	23.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	3.601202326	2	3	0	0	1	0.398797674	NA	3	NA	1	NA	0.601202326	1.852295409	0.926147705	2	2.45843232	1.024860223	2.398797674	NA	NA	0	NA	NA	0	4	NA	1	1	4.26E-23	1	2.79E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	186944639	G	T	-	-	-	-	-	-	51	0	0	33	8	24.2	40	5	12.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.450067864	1.450067864	1	1.346491228	1.346491228	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.85E-12	1	0.00000178	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	20247608	G	A	-	-	-	-	-	-	36	0	0	35	14	40	32	7	21.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.996806387	0.998403194	2	2.140052632	1.070026316	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.28E-23	1	2.36E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	20248837	C	A	-	-	-	-	-	-	39	0	0	49	19	38.8	39	6	15.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.293868134	5.486552635	2	3	2	2	0.706131866	0.513447365	3	3	2	3	0.293868134	0.486552635	2.438923032	1.063235936	2.293868134	1.887806299	1.887806299	1	NA	NA	0	NA	NA	0	4	NA	1	1	3.12E-31	1	4.43E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	20259019	C	A	C20orf26	CCDS33447.1	r.?	-	-	intronic	33	0	0	29	4	13.8	29	1	3.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	4.362325493	2	2	1	2	1	0.637674507	NA	3	NA	2	NA	0.362325493	0.688898204	0.688898204	1	0.378564681	0.378564681	1	NA	NA	0	NA	NA	1	4	NA	1	1	0.0000134	1	0.135292269	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	20261751	C	A	ZNF90	ENST00000427401	r.?	-	-	intronic	22	0	0	33	5	15.2	13	1	7.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5.384331439	2	3	1	2	1	0.615668561	NA	4	NA	2	NA	0.384331439	0.758786427	0.758786427	1	0.936032117	0.936032117	1	NA	NA	0	NA	NA	1	4	NA	1	1	0.00000066	1	0.063085307	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	20262873	A	C	-	-	-	-	-	-	37	0	0	32	15	46.9	30	7	23.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	2.341255489	1.170627745	2	2.276859649	1.138429825	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.59E-26	1	1.44E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	20267282	C	A	-	-	-	-	-	-	34	0	0	23	4	17.4	24	3	12.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.868610778	0.868610778	1	1.221491228	1.221491228	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.00000513	1	0.000233853	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	20284933	C	T	-	-	-	-	-	-	45	0	0	34	15	44.1	40	10	25	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	2.201479042	1.100739521	2	2.942982456	0.980994152	3	NA	NA	0	NA	NA	1	4	NA	1	1	5.18E-26	1	7.22E-15	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	193042946	A	G	TMEFF2	CCDS2314.1	r.?	-	-	intronic	45	0	0	69	8	11.6	44	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.695073852	0.695073852	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	2.49E-09	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	194866762	G	T	-	-	-	-	-	-	44	0	0	52	19	36.5	32	4	12.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.187085828	1.093542914	2	1.346491228	1.346491228	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.24E-30	1	0.0000201	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	20313362	G	A	-	-	-	-	-	-	47	0	0	71	44	62	41	5	12.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7.364463357	4.32434803	5	2	2	2	0.635536643	0.67565197	6	3	2	2	0.364463357	0.32434803	5.801017181	1.081378844	5.364463357	1.353745898	1.353745898	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.46E-82	1	0.00000202	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	21	20336233	A	C	-	-	-	-	-	-	43	0	0	82	21	25.6	44	5	11.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.55136616	5	2	3	2	2	0.44863384	1	3	NA	2	NA	0.55136616	NA	1.675105825	1.07976174	1.55136616	1.342	1.342	1	NA	NA	0	NA	NA	1	4	NA	1	1	6.53E-30	1	0.00000288	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	20346759	G	A	UMOD	CCDS10583.1	r.?	-	-	intronic	42	0	0	39	10	25.6	33	6	18.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.499724906	5.626372055	2	3	2	2	0.500275094	0.373627945	3	3	2	3	0.499724906	0.626372055	1.661885664	1.661885664	1	2.256490942	0.950650647	2.373627945	NA	NA	0	NA	NA	1	4	NA	1	1	5.44E-15	1	1.54E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	20378443	A	T	-	-	-	-	-	-	52	0	0	50	12	24	36	7	19.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.293868134	5.486552635	2	3	2	2	0.706131866	0.513447365	3	3	2	3	0.293868134	0.486552635	1.508612185	1.508612185	1	2.378145597	0.946168848	2.513447365	NA	NA	0	NA	NA	0	4	NA	1	1	2.49E-17	1	5.74E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	20422857	G	A	ACSM5	CCDS10585.1	r.198g>a	c.51G>A	p.R17R	silent	29	0	0	42	14	33.3	24	5	20.8	291	0	0	138	41	29.7	156	20	12.8	2.29E-16	TRUE	TRUE	4.499724906	5.626372055	2	3	2	2	0.500275094	0.373627945	3	3	2	3	0.499724906	0.626372055	2.161749711	1.080874856	2	2.578846791	1.086457883	2.373627945	1.92804704	0.96402352	2	1.586982641	1.155322041	1.373627945	4	3	1	1	2.83E-22	6.08E-60	0.000000123	4.18E-22	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	2	195120201	G	C	-	-	-	-	-	-	38	0	0	66	11	16.7	30	1	3.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.000666667	1.000666667	1	0.355473684	0.355473684	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.07E-14	1	0.139615808	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	20457723	G	C	-	-	-	-	-	-	35	0	0	23	7	30.4	30	3	10	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1	2.620991218	1	2	0	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0.909572854	0.909572854	1	0.939292104	0.939292104	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.79E-11	1	0.000458697	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	20475523	G	T	SLIT2	ENST00000504154	r.?	-	-	intronic	56	0	0	28	5	17.9	29	1	3.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.661749236	3	2	2	0	1	0.338250764	1	2	NA	1	NA	0.661749236	NA	0.833023971	0.833023971	1	0.332245614	0.332245614	1	NA	NA	0	NA	NA	1	4	NA	1	1	0.000000279	1	0.135292269	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	20481423	T	C	-	-	-	-	-	-	52	0	0	39	6	15.4	40	1	2.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.37044448	5	2	3	1	2	0.62955552	1	2	NA	2	NA	0.37044448	NA	0.825818909	0.825818909	1	0.294298246	0.294298246	1	NA	NA	0	NA	NA	1	4	NA	1	1	4.43E-08	1	0.181679879	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	202676648	C	A	CDK15	CCDS2350.1	r.?	-	-	intronic	41	0	0	46	7	15.2	30	2	6.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.910786427	0.910786427	1	0.721719298	0.721719298	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.53E-09	1	0.009909649	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	20513795	C	T	-	-	-	-	-	-	43	1	2.3	22	8	36.4	24	8	33.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.453093812	1.453093812	1	2.921052632	1.460526316	2	NA	NA	1	NA	NA	1	4	NA	0.193893409	1	1.17E-13	1	2.68E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	207237714	T	A	-	-	-	-	-	-	39	0	0	53	4	7.5	43	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.449401198	0.449401198	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.000150502	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	20537661	G	A	-	-	-	-	-	-	36	0	0	31	13	41.9	18	4	22.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	2.091654691	1.045827345	2	2.169368421	2.169368421	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.32E-22	1	0.00000181	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	20539333	T	G	MLLT3	CCDS6494.1	r.?	-	-	intronic	56	0	0	30	11	36.7	29	5	17.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1	1	1	1	0	0	1	1	NA	NA	NA	NA	NA	NA	1.09806986	1.09806986	1	1.33677193	1.33677193	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.44E-18	1	0.000000336	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	20546961	T	C	ZMYM2	CCDS45016.1	r.?	-	-	intronic	44	0	0	27	7	25.9	18	2	11.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.033932136	1.033932136	1	0.973684211	0.973684211	1	NA	NA	1	NA	NA	1	4	NA	1	1	6.36E-11	1	0.003626632	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	20601044	G	A	-	-	-	-	-	-	51	0	0	53	9	17	37	4	10.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7.364463357	4.32434803	5	2	2	2	0.635536643	0.67565197	6	3	2	2	0.364463357	0.32434803	1.590601485	1.590601485	1	1.198398008	1.198398008	1	NA	NA	0	NA	NA	0	4	NA	1	1	7.10E-12	1	0.0000362	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	20618327	G	T	-	-	-	-	-	-	23	0	0	32	20	62.5	20	4	20	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.49500998	1.24750499	2	1.754385965	1.754385965	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.03E-38	1	0.00000284	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	20635680	G	A	-	-	-	-	-	-	41	0	0	23	7	30.4	14	3	21.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.661749236	3	2	2	0	1	0.338250764	1	2	NA	1	NA	0.661749236	NA	1.414744622	1.414744622	1	2.091192982	2.091192982	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.79E-11	1	0.0000437	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	21	20636163	C	T	-	-	-	-	-	-	34	0	0	75	27	36	60	16	26.7	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	NA	5	NA	3	NA	2	NA	1	NA	NA	NA	NA	NA	NA	NA	NA	1	3.143105263	1.047701754	3	NA	NA	1	NA	NA	1	NA	NA	1	1	1.08E-42	1	1.86E-23	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	20664295	C	T	-	-	-	-	-	-	56	0	0	47	11	23.4	29	2	6.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.37044448	5	2	3	1	2	0.62955552	1	2	NA	2	NA	0.37044448	NA	1.254815745	1.254815745	1	0.812263158	0.812263158	1	NA	NA	0	NA	NA	1	4	NA	1	1	7.21E-16	1	0.009279585	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	20677006	G	A	ABCB5	CCDS5371.1	r.?	-	-	intronic	61	0	0	102	19	18.6	59	12	20.3	193	1	0.5	1094	146	13.3	732	90	12.3	2.42E-66	TRUE	TRUE	7.505836279	4.260310284	5	2	2	2	0.494163721	0.739689716	6	3	2	2	0.505836279	0.260310284	1.766600518	0.883300259	2	2.239544742	0.990812968	2.260310284	1.263214349	0.838878945	1.505836279	1.356965533	1.07669163	1.260310284	4	3	1	0.619937882	2.57E-24	1.68E-153	2.20E-16	4.79E-92	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	7	20677107	G	A	ABCB5	CCDS5371.1	r.?	-	-	intronic	38	0	0	88	17	19.3	52	6	11.5	78	0	0	317	28	8.8	207	22	10.6	4.24E-16	TRUE	TRUE	7.505836279	4.260310284	5	2	2	2	0.494163721	0.739689716	6	3	2	2	0.505836279	0.260310284	1.833085484	0.916542742	2	1.268707612	1.268707612	1	0.835810998	0.835810998	1	1.169417451	1.169417451	1	4	3	1	1	3.34E-22	9.47E-26	0.000000261	2.46E-22	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	7	20677531	G	A	ABCB5	CCDS5371.1	r.?	-	-	intronic	54	0	0	93	14	15.1	29	11	37.9	148	0	0	962	142	14.8	546	78	14.3	8.33E-63	TRUE	TRUE	7.505836279	4.260310284	5	2	2	2	0.494163721	0.739689716	6	3	2	2	0.505836279	0.260310284	1.434175689	1.434175689	1	4.181219001	1.849842931	2.260310284	1.405682133	0.933489352	1.505836279	1.577610335	0.788805168	2	4	3	1	1	6.26E-17	7.99E-156	1.56E-18	2.82E-85	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	15	20686308	T	C	-	-	-	-	-	-	16	0	0	15	7	46.7	12	6	50	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6.403731855	5	4	4	2	1	0.596268145	1	5	NA	2	NA	0.403731855	NA	3.920814233	0.980203558	4	5.885964912	1.471491228	4	NA	NA	0	NA	NA	0	4	NA	1	1	4.85E-13	1	1.41E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	20696893	C	T	ABCB5	CCDS5371.1	r.?	-	-	intronic	46	0	0	104	45	43.3	55	15	27.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7.505836279	4.260310284	5	2	2	2	0.494163721	0.739689716	6	3	2	2	0.505836279	0.260310284	4.112570023	1.028142506	4	3.01180155	1.332472613	2.260310284	NA	NA	0	NA	NA	0	4	NA	1	1	1.32E-74	1	3.01E-22	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	20696969	C	G	ABCB5	CCDS5371.1	r.?	-	-	intronic	52	0	0	104	39	37.5	44	14	31.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7.505836279	4.260310284	5	2	2	2	0.494163721	0.739689716	6	3	2	2	0.505836279	0.260310284	3.561694593	1.01593295	3.505836279	3.508252354	1.552110956	2.260310284	NA	NA	0	NA	NA	0	4	NA	1	1	8.11E-62	1	6.10E-22	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	20697936	C	G	ABCB5	CCDS5371.1	r.?	-	-	intronic	52	0	0	98	47	48	43	13	30.2	0	0	NA	14	8	57.1	5	0	0	1	TRUE	FALSE	7.505836279	4.260310284	5	2	2	2	0.494163721	0.739689716	6	3	2	2	0.505836279	0.260310284	4.558969079	1.011791995	4.505836279	3.331736513	1.474017323	2.260310284	5.423273633	0.985004522	5.505836279	0	NA	0	4	NA	1	1	1.30E-80	1.14E-15	3.88E-20	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	20698199	C	G	ABCB5	CCDS5371.1	r.1737c>g	c.272C>G	p.A91G	missense	46	0	0	91	45	49.5	50	19	38	172	0	0	845	333	39.4	565	141	25	4.12E-148	TRUE	TRUE	7.505836279	4.260310284	5	2	2	2	0.494163721	0.739689716	6	3	2	2	0.505836279	0.260310284	4.701436862	1.043410495	4.505836279	4.192251241	1.854723783	2.260310284	3.742153785	0.935538446	4	2.758060027	1.220213015	2.260310284	4	3	1	1	4.66E-78	0	5.00E-31	1.23E-189	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	7	20698620	C	T	ABCB5	CCDS5371.1	r.?	-	-	intronic	47	0	0	97	38	39.2	51	12	23.5	266	0	0	847	285	33.6	665	111	16.7	2.90E-96	TRUE	TRUE	7.505836279	4.260310284	5	2	2	2	0.494163721	0.739689716	6	3	2	2	0.505836279	0.260310284	3.723158081	1.061988577	3.505836279	2.592576425	1.147000234	2.260310284	3.191278355	1.063759452	3	1.842384098	0.921192049	2	4	3	1	1	3.62E-61	0	3.24E-17	1.78E-128	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	7	20698624	C	T	ABCB5	CCDS5371.1	r.?	-	-	intronic	47	0	0	100	43	43	51	14	27.5	271	0	0	846	290	34.3	674	111	16.5	1.35E-95	TRUE	TRUE	7.505836279	4.260310284	5	2	2	2	0.494163721	0.739689716	6	3	2	2	0.505836279	0.260310284	4.084076466	1.021019117	4	3.03386603	1.342234317	2.260310284	3.257763321	0.929240005	3.505836279	1.820319618	0.910159809	2	4	3	1	1	3.28E-71	0	6.64E-21	8.67E-128	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	7	20698635	C	T	ABCB5	CCDS5371.1	r.?	-	-	intronic	49	0	0	102	45	44.1	56	14	25	273	0	0	846	273	32.3	672	115	17.1	5.91E-101	TRUE	TRUE	7.505836279	4.260310284	5	2	2	2	0.494163721	0.739689716	6	3	2	2	0.505836279	0.260310284	4.188552841	1.04713821	4	2.758060027	1.220213015	2.260310284	3.067806276	1.022602092	3	1.886513059	0.943256529	2	4	3	1	1	4.26E-75	0	2.91E-20	2.30E-134	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	7	20698666	C	G	ABCB5	CCDS5371.1	r.?	-	-	intronic	50	0	0	99	45	45.5	60	11	18.3	314	0	0	824	264	32	668	123	18.4	6.27E-112	TRUE	TRUE	7.505836279	4.260310284	5	2	2	2	0.494163721	0.739689716	6	3	2	2	0.505836279	0.260310284	4.321522772	0.959094495	4.505836279	2.01889994	1.00944997	2	3.039312719	1.01310424	3	2.02993218	1.01496609	2	4	3	1	1	7.37E-76	0	1.34E-14	8.97E-148	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	7	20698680	C	A	ABCB5	CCDS5371.1	r.?	-	-	intronic	47	0	0	106	49	46.2	62	13	21	324	2	0.6	780	247	31.7	623	113	18.1	3.30E-102	TRUE	TRUE	7.505836279	4.260310284	5	2	2	2	0.494163721	0.739689716	6	3	2	2	0.505836279	0.260310284	4.388007738	0.973849795	4.505836279	2.316770423	1.024978933	2.260310284	3.010819162	1.003606387	3	1.99683546	0.99841773	2	4	3	1	0.482003561	6.24E-83	0	8.08E-18	4.06E-135	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	2	217083710	C	G	-	-	-	-	-	-	42	0	0	39	11	28.2	35	8	22.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.689748503	0.844874251	2	2.46677193	1.233385965	2	NA	NA	1	NA	NA	1	4	NA	1	1	7.20E-17	1	8.15E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	20698871	C	G	ABCB5	CCDS5371.1	r.?	-	-	intronic	44	0	0	69	28	40.6	40	9	22.5	260	0	0	633	248	39.2	406	89	21.9	1.10E-88	TRUE	TRUE	7.505836279	4.260310284	5	2	2	2	0.494163721	0.739689716	6	3	2	2	0.505836279	0.260310284	3.856128012	0.964032003	4	2.482254024	1.098191714	2.260310284	3.723158081	1.061988577	3.505836279	2.416060584	1.068906601	2.260310284	4	3	1	1	5.13E-46	0	4.64E-13	8.62E-115	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	7	20698937	C	G	ABCB5	CCDS5371.1	r.?	-	-	intronic	44	0	0	97	40	41.2	42	14	33.3	138	0	0	454	174	38.3	271	50	18.5	1.33E-46	TRUE	TRUE	7.505836279	4.260310284	5	2	2	2	0.494163721	0.739689716	6	3	2	2	0.505836279	0.260310284	3.913115126	0.978278781	4	3.673735956	1.625323736	2.260310284	3.637677411	1.037606186	3.505836279	2.04096442	1.02048221	2	4	3	1	1	2.00E-65	6.98E-272	2.83E-22	3.53E-61	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	7	20699533	C	T	ABCB5	CCDS5371.1	r.?	-	-	intronic	31	0	0	110	44	40	57	12	21.1	0	0	NA	2	2	100	0	0	NA	1	TRUE	FALSE	7.505836279	4.260310284	5	2	2	2	0.494163721	0.739689716	6	3	2	2	0.505836279	0.260310284	3.799140899	0.949785225	4	2.327802663	1.029859785	2.260310284	9.497852247	1.725051703	5.505836279	NA	NA	0	4	NA	1	1	4.52E-71	0.000025	1.40E-16	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	20699976	C	T	ABCB5	CCDS5371.1	r.?	-	-	intronic	43	0	0	101	38	37.6	46	15	32.6	0	0	NA	1	0	0	0	0	NA	1	TRUE	FALSE	7.505836279	4.260310284	5	2	2	2	0.494163721	0.739689716	6	3	2	2	0.505836279	0.260310284	3.571192445	1.018642104	3.505836279	3.596510275	1.591157772	2.260310284	0	0	1	NA	NA	0	4	NA	1	1	2.43E-60	1	1.35E-23	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	20700251	C	T	ABCB5	CCDS5371.1	r.?	-	-	intronic	48	0	0	75	22	29.3	31	8	25.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7.505836279	4.260310284	5	2	2	2	0.494163721	0.739689716	6	3	2	2	0.505836279	0.260310284	2.782870708	0.927623569	3	2.846317948	1.259259832	2.260310284	NA	NA	0	NA	NA	0	4	NA	1	1	9.55E-33	1	2.78E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	20700455	C	T	ABCB5	CCDS5371.1	r.?	-	-	intronic	43	0	0	100	48	48	43	7	16.3	0	0	NA	0	0	NA	2	0	0	1	TRUE	FALSE	7.505836279	4.260310284	5	2	2	2	0.494163721	0.739689716	6	3	2	2	0.505836279	0.260310284	4.558969079	1.011791995	4.505836279	1.798255138	1.798255138	1	NA	NA	0	0	NA	0	4	NA	1	1	2.57E-82	1	2.15E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	218766002	C	T	TNS1	CCDS2407.1	r.?	-	-	intronic	33	0	0	51	25	49	17	2	11.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.936087824	1.468043912	2	1.271087719	1.271087719	1	NA	NA	1	NA	NA	1	4	NA	1	1	6.52E-44	1	0.003234386	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	20701271	C	T	ABCB5	CCDS5371.1	r.?	-	-	intronic	28	0	0	64	24	37.5	38	9	23.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7.505836279	4.260310284	5	2	2	2	0.494163721	0.739689716	6	3	2	2	0.505836279	0.260310284	3.561694593	1.01593295	3.505836279	2.614640906	1.156761939	2.260310284	NA	NA	0	NA	NA	0	4	NA	1	1	1.23E-38	1	2.79E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	20701274	C	T	ABCB5	CCDS5371.1	r.?	-	-	intronic	30	0	0	62	24	38.7	37	8	21.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7.505836279	4.260310284	5	2	2	2	0.494163721	0.739689716	6	3	2	2	0.505836279	0.260310284	3.67566882	1.048442804	3.505836279	2.382963863	1.054264045	2.260310284	NA	NA	0	NA	NA	0	4	NA	1	1	4.81E-39	1	1.33E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	20702923	C	G	ABCB5	CCDS5371.1	r.?	-	-	intronic	59	0	0	99	39	39.4	54	11	20.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7.505836279	4.260310284	5	2	2	2	0.494163721	0.739689716	6	3	2	2	0.505836279	0.260310284	3.742153785	0.935538446	4	2.250576982	0.995693821	2.260310284	NA	NA	0	NA	NA	0	4	NA	1	1	7.46E-63	1	3.84E-15	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	20703188	G	A	ABCB5	CCDS5371.1	r.?	-	-	intronic	27	0	0	90	57	63.3	26	10	38.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7.505836279	4.260310284	5	2	2	2	0.494163721	0.739689716	6	3	2	2	0.505836279	0.260310284	6.012140472	1.091957728	5.505836279	4.247412442	1.879128044	2.260310284	NA	NA	0	NA	NA	0	4	NA	1	1	2.49E-107	1	4.82E-17	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	20703377	C	T	ABCB5	CCDS5371.1	r.?	-	-	intronic	30	0	0	45	16	35.6	29	8	27.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7.505836279	4.260310284	5	2	2	2	0.494163721	0.739689716	6	3	2	2	0.505836279	0.260310284	3.3812354	0.964459014	3.505836279	3.04489827	1.347115169	2.260310284	NA	NA	1	NA	NA	0	4	NA	1	1	8.61E-26	1	1.53E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	20703891	C	G	ABCB5	CCDS5371.1	r.?	-	-	intronic	53	0	0	89	34	38.2	51	14	27.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7.505836279	4.260310284	5	2	2	2	0.494163721	0.739689716	6	3	2	2	0.505836279	0.260310284	3.628179558	1.034897032	3.505836279	3.03386603	1.342234317	2.260310284	NA	NA	1	NA	NA	0	4	NA	1	1	1.96E-54	1	6.64E-21	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	20704164	C	A	ABCB5	CCDS5371.1	r.?	-	-	intronic	72	0	0	93	33	35.5	49	12	24.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7.505836279	4.260310284	5	2	2	2	0.494163721	0.739689716	6	3	2	2	0.505836279	0.260310284	3.371737548	0.961749859	3.505836279	2.702898827	1.195808755	2.260310284	NA	NA	1	NA	NA	0	4	NA	1	1	1.39E-51	1	1.90E-17	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	20705303	C	G	ABCB5	CCDS5371.1	r.?	-	-	intronic	30	0	0	87	33	37.9	47	15	31.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7.505836279	4.260310284	5	2	2	2	0.494163721	0.739689716	6	3	2	2	0.505836279	0.260310284	3.599686002	1.026769568	3.505836279	3.519284595	1.556991808	2.260310284	NA	NA	0	NA	NA	0	4	NA	1	1	9.41E-53	1	1.97E-23	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	20712561	T	A	CDKAL1	CCDS4546.1	r.?	-	-	intronic	36	0	0	43	15	34.9	27	4	14.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.293868134	5.486552635	2	3	2	2	0.706131866	0.513447365	3	3	2	3	0.293868134	0.486552635	2.193773552	0.956364282	2.293868134	1.814255404	1.814255404	1	NA	NA	0	NA	NA	0	4	NA	1	1	4.05E-24	1	0.00001	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	20729584	C	A	-	-	-	-	-	-	40	0	0	28	9	32.1	22	6	27.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1	2.620991218	1	2	0	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0.960437126	0.960437126	1	2.564267445	1.282133722	2	NA	NA	0	NA	NA	0	4	NA	1	1	1.24E-14	1	1.09E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	21	20779714	A	C	-	-	-	-	-	-	43	0	0	77	8	10.4	40	3	7.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.559012765	5	2	3	2	2	0.440987235	1	3	NA	2	NA	0.559012765	NA	0.681306988	0.681306988	1	0.882894737	0.882894737	1	NA	NA	0	NA	NA	1	4	NA	1	1	6.05E-09	1	0.001075403	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	20807077	A	T	HS1BP3	ENST00000415264	r.?	-	-	intronic	44	0	0	63	5	7.9	39	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	4	4	0	0	1	1	NA	NA	NA	NA	NA	NA	0.473369261	0.473369261	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.0000173	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	20819569	C	G	HS1BP3	CCDS1700.1	r.?	-	-	intronic	21	0	0	50	15	30	19	2	10.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	4	4	0	0	1	1	NA	NA	NA	NA	NA	NA	1.79760479	0.898802395	2	1.131052632	1.131052632	1	NA	NA	1	NA	NA	1	4	NA	1	1	5.83E-23	1	0.004039874	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	20821625	G	A	-	-	-	-	-	-	40	0	0	55	7	12.7	37	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	7.364463357	4.32434803	5	2	2	2	0.635536643	0.67565197	6	3	2	2	0.364463357	0.32434803	1.188272874	1.188272874	1	0	NA	0	NA	NA	0	NA	NA	0	NA	NA	1	1	1.28E-08	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	20841440	C	T	HS1BP3	CCDS1700.1	r.?	-	-	intronic	15	0	0	41	26	63.4	21	8	38.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	4	4	0	0	1	1	NA	NA	NA	NA	NA	NA	3.798938124	0.949734531	4	4.104105263	1.026026316	4	NA	NA	1	NA	NA	1	4	NA	1	1	8.79E-50	1	7.50E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	20853896	G	A	NELL1	CCDS7855.1	r.?	-	-	intronic	55	0	0	47	21	44.7	36	5	13.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	2.231431138	1.115715569	2	1.358298246	1.358298246	1	NA	NA	1	NA	NA	1	4	NA	1	1	5.29E-36	1	0.00000104	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	20857388	G	A	CDKAL1	CCDS4546.1	r.?	-	-	intronic	74	0	0	49	24	49	35	8	22.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.293868134	5.486552635	2	3	2	2	0.706131866	0.513447365	3	3	2	3	0.293868134	0.486552635	3.08008321	1.342746413	2.293868134	2.807192483	0.935730828	3	NA	NA	0	NA	NA	0	4	NA	1	1	3.34E-42	1	8.15E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	20957081	A	G	-	-	-	-	-	-	49	0	0	39	9	23.1	28	2	7.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.922155689	0.922155689	1	0.622807018	0.622807018	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.62E-13	1	0.008668191	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	223772778	G	A	ACSL3	CCDS2455.1	r.?	-	-	intronic	49	0	0	50	18	36	27	5	18.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.437125749	1.437125749	1	1.622807018	1.622807018	1	NA	NA	1	NA	NA	1	4	NA	1	1	5.92E-29	1	0.00000023	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	21056831	C	A	-	-	-	-	-	-	49	0	0	65	26	40	42	4	9.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7.364463357	4.32434803	5	2	2	2	0.635536643	0.67565197	6	3	2	2	0.364463357	0.32434803	3.74259173	0.935647932	4	1.054146396	1.054146396	1	NA	NA	0	NA	NA	0	4	NA	1	1	1.24E-42	1	0.0000601	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	21133432	G	C	-	-	-	-	-	-	44	0	0	45	30	66.7	39	9	23.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7.364463357	4.32434803	5	2	2	2	0.635536643	0.67565197	6	3	2	2	0.364463357	0.32434803	6.240771709	1.163354337	5.364463357	2.563240184	1.102778134	2.32434803	NA	NA	0	NA	NA	0	4	NA	1	1	2.99E-58	1	3.62E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	21194584	G	T	-	-	-	-	-	-	49	0	0	35	6	17.1	23	5	21.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	4.362325493	2	2	1	2	1	0.637674507	NA	3	NA	2	NA	0.362325493	0.853634731	0.853634731	1	2.416133404	1.022777518	2.362325493	NA	NA	0	NA	NA	1	4	NA	1	1	2.24E-08	1	9.75E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	226012467	T	C	-	-	-	-	-	-	42	0	0	30	14	46.7	28	7	25	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.864271457	0.932135729	2	2.192982456	1.096491228	2	NA	NA	1	NA	NA	1	4	NA	1	1	8.24E-25	1	8.44E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	21252934	T	G	-	-	-	-	-	-	57	0	0	45	25	55.6	38	14	36.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7.364463357	4.32434803	5	2	2	2	0.635536643	0.67565197	6	3	2	2	0.364463357	0.32434803	5.202202504	0.96975264	5.364463357	4.083430251	1.756806725	2.32434803	NA	NA	1	NA	NA	0	4	NA	1	1	8.58E-46	1	5.28E-23	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	21	21283655	G	A	-	-	-	-	-	-	49	0	0	47	10	21.3	42	9	21.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.559012765	5	2	3	2	2	0.440987235	1	3	NA	2	NA	0.559012765	NA	1.39536912	1.39536912	1	2.519192982	0.839730994	3	NA	NA	0	NA	NA	1	4	NA	1	1	4.27E-14	1	7.51E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	21375270	G	A	-	-	-	-	-	-	29	0	0	35	22	62.9	31	14	45.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	4	4	0	0	1	1	NA	NA	NA	NA	NA	NA	3.768978044	0.942244511	4	4.868912281	1.21722807	4	NA	NA	1	NA	NA	1	4	NA	1	1	3.31E-42	1	1.49E-24	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	228260781	C	A	-	-	-	-	-	-	47	0	0	33	6	18.2	29	7	24.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.726546906	0.726546906	1	2.114035088	1.057017544	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.54E-08	1	1.11E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	21383320	G	A	-	-	-	-	-	-	28	0	0	22	6	27.3	16	2	12.5	199	0	0	96	32	33.3	128	12	9.4	8.12E-09	TRUE	TRUE	1	2.620991218	1	2	0	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0.816820359	0.816820359	1	1.17411513	1.17411513	1	0.996341317	0.996341317	1	0.882934578	0.882934578	1	4	3	1	1	1.09E-09	5.07E-49	0.002863359	3.39E-12	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	5	21387125	A	C	-	-	-	-	-	-	38	0	0	31	4	12.9	21	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.51497006	0.51497006	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.0000177	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	21388805	G	A	-	-	-	-	-	-	59	0	0	39	7	17.9	32	2	6.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	4.362325493	2	2	1	2	1	0.637674507	NA	3	NA	2	NA	0.362325493	0.893570858	0.893570858	1	0.69032383	0.69032383	1	NA	NA	0	NA	NA	0	4	NA	1	1	1.04E-09	1	0.011224977	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	238956343	C	T	-	-	-	-	-	-	42	0	0	29	10	34.5	44	9	20.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.377245509	1.377245509	1	1.798245614	0.899122807	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.79E-16	1	1.18E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	21428762	C	G	-	-	-	-	-	-	55	0	0	41	11	26.8	40	1	2.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	4	4	0	0	1	1	NA	NA	NA	NA	NA	NA	1.605860279	1.605860279	1	0.269298246	0.269298246	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.34E-16	1	0.181679879	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	21431953	A	G	-	-	-	-	-	-	36	0	0	40	6	15	33	4	12.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	4	4	0	0	1	1	NA	NA	NA	NA	NA	NA	0.898802395	0.898802395	1	1.303403509	1.303403509	1	NA	NA	1	NA	NA	1	4	NA	1	1	5.18E-08	1	0.0000228	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	142210	A	C	-	-	-	-	-	-	53	0	0	37	16	43.2	26	5	19.2	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1	NA	NA	1	NA	NA	1	NA	NA	1	NA	NA	1	1	1.78E-27	1	0.000000188	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	21449431	A	C	-	-	-	-	-	-	48	1	2.1	19	9	47.4	25	5	20	148	0	0	110	39	35.5	120	16	13.3	1.16E-13	TRUE	TRUE	1	2.620991218	1	2	0	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.418215569	1.418215569	1	1.878584208	1.878584208	1	1.062165669	1.062165669	1	1.249258499	1.249258499	1	4	3	0.213845552	1	1.72E-16	1.18E-60	0.000000153	2.90E-18	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	3	1054011	C	A	-	-	-	-	-	-	48	0	0	48	5	10.4	35	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.37044448	5	2	3	1	2	0.62955552	1	2	NA	2	NA	0.37044448	NA	0.557695887	0.557695887	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	0.00000447	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	21502517	T	C	-	-	-	-	-	-	23	0	0	47	6	12.8	29	3	10.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	4	4	0	0	1	1	NA	NA	NA	NA	NA	NA	0.766978044	0.766978044	1	1.109508772	1.109508772	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.000000141	1	0.000414371	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	21503614	G	A	LAMA3	CCDS42419.1	r.?	-	-	intronic	46	0	0	32	6	18.8	22	1	4.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.750499002	0.750499002	1	0.394736842	0.394736842	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.27E-08	1	0.104413009	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	21503871	C	T	-	-	-	-	-	-	51	0	0	49	7	14.3	35	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	4	4	0	0	1	1	NA	NA	NA	NA	NA	NA	0.856858283	0.856858283	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	5.58E-09	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	21520090	T	C	-	-	-	-	-	-	46	0	0	48	16	33.3	28	6	21.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	4	4	0	0	1	1	NA	NA	NA	NA	NA	NA	1.995341317	0.997670659	2	2.305192982	1.152596491	2	NA	NA	1	NA	NA	1	4	NA	1	1	2.96E-25	1	5.36E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	21	21569107	G	T	-	-	-	-	-	-	64	0	0	55	11	20	49	3	6.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.559012765	5	2	3	2	2	0.440987235	1	3	NA	2	NA	0.559012765	NA	1.310205747	1.310205747	1	0.718087719	0.718087719	1	NA	NA	0	NA	NA	1	4	NA	1	1	4.77E-15	1	0.001939399	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	21642251	C	T	KCNIP4	CCDS43217.1	r.?	-	-	intronic	52	0	0	33	16	48.5	23	4	17.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.661749236	3	2	2	0	1	0.338250764	1	2	NA	1	NA	0.661749236	NA	2.257076124	1.128538062	2	1.700315789	1.700315789	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.64E-28	1	0.00000513	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	21688679	C	T	TTC39C	CCDS45839.1	r.?	-	-	intronic	32	0	0	34	10	29.4	26	2	7.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.173652695	1.173652695	1	0.675438596	0.675438596	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.15E-15	1	0.007502227	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	21702211	G	A	KCNIP4	CCDS43217.1	r.?	-	-	upstream	50	0	0	42	8	19	31	3	9.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.661749236	3	2	2	0	1	0.338250764	1	2	NA	1	NA	0.661749236	NA	0.884215389	0.884215389	1	0.947877193	0.947877193	1	NA	NA	0	NA	NA	1	4	NA	1	1	3.96E-11	1	0.000505952	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	21702935	C	A	-	-	-	-	-	-	49	0	0	37	5	13.5	31	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.538922156	0.538922156	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.00000119	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	21714538	T	A	ZNF385D	CCDS2636.1	r.?	-	-	intronic	43	0	0	47	10	21.3	38	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.37044448	5	2	3	1	2	0.62955552	1	2	NA	2	NA	0.37044448	NA	1.142204075	1.142204075	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	4.27E-14	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	21715502	C	T	-	-	-	-	-	-	35	0	0	45	8	17.8	27	2	7.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.293868134	5.486552635	2	3	2	2	0.706131866	0.513447365	3	3	2	3	0.293868134	0.486552635	1.11888737	1.11888737	1	0.907127702	0.907127702	1	NA	NA	0	NA	NA	0	4	NA	1	1	7.14E-11	1	0.00807567	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	21743465	T	C	DNAH11	ENST00000424253	r.?	-	-	intronic	61	0	0	63	9	14.3	30	0	0	84	0	0	434	66	15.2	358	0	0	1	FALSE	FALSE	5	4.260310284	3	2	2	2	1	0.739689716	NA	3	NA	2	NA	0.260310284	0.999858283	0.999858283	1	0	NA	0	1.062786427	1.062786427	1	0	NA	0	NA	NA	1	1	3.62E-11	2.62E-74	1	1	YES	1_1	0_0	somatic	custom.pulldown.HiSeq
PD9852b	3	1679890	C	A	-	-	-	-	-	-	53	0	0	35	6	17.1	37	3	8.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.37044448	5	2	3	1	2	0.62955552	1	2	NA	2	NA	0.37044448	NA	0.916980737	0.916980737	1	0.953526316	0.953526316	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.24E-08	1	0.000855237	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	21793343	G	T	NBPF3	CCDS216.1	r.?	-	-	intronic	99	0	0	95	15	15.8	48	5	10.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	0.788738523	0.788738523	1	1.224280702	1.224280702	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.31E-18	1	0.00000447	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	21803540	C	T	-	-	-	-	-	-	18	0	0	47	8	17	24	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.293868134	5.486552635	2	3	2	2	0.706131866	0.513447365	3	3	2	3	0.293868134	0.486552635	1.068600297	1.068600297	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	1.03E-10	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	21807306	T	C	NBPF3	CCDS216.1	r.?	-	-	intronic	26	0	0	30	13	43.3	21	7	33.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	2.161542914	1.080771457	2	3.920052632	1.306684211	3	NA	NA	0	NA	NA	1	4	NA	1	1	1.35E-22	1	8.54E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	1943718	T	A	-	-	-	-	-	-	58	0	0	36	4	11.1	28	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.37044448	5	2	3	1	2	0.62955552	1	2	NA	2	NA	0.37044448	NA	0.59523311	0.59523311	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	0.0000324	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	21826662	T	C	-	-	-	-	-	-	37	0	0	21	5	23.8	32	1	3.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.1880998	1.1880998	1	0.302929825	0.302929825	1	NA	NA	1	NA	NA	1	4	NA	1	1	5.95E-08	1	0.14819814	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	21	21849378	G	C	-	-	-	-	-	-	42	0	0	57	20	35.1	42	11	26.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.559012765	5	2	3	2	2	0.440987235	1	3	NA	2	NA	0.559012765	NA	2.299411085	0.898553972	2.559012765	3.084245614	1.028081871	3	NA	NA	0	NA	NA	1	4	NA	1	1	9.67E-32	1	1.81E-16	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	21	21851073	G	A	-	-	-	-	-	-	54	0	0	46	5	10.9	54	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.559012765	5	2	3	2	2	0.440987235	1	3	NA	2	NA	0.559012765	NA	0.714062132	0.714062132	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	0.00000361	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	21903657	A	G	-	-	-	-	-	-	49	0	0	45	16	35.6	35	2	5.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.37044448	5	2	3	1	2	0.62955552	1	2	NA	2	NA	0.37044448	NA	1.909035919	0.95451796	2	0.671	0.671	1	NA	NA	0	NA	NA	1	4	NA	1	1	8.61E-26	1	0.013332991	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	17	21958395	T	C	-	-	-	-	-	-	44	0	0	25	5	20	28	1	3.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	3.601202326	2	3	0	0	1	0.398797674	NA	3	NA	1	NA	0.601202326	0.798403194	0.798403194	1	0.373432757	0.373432757	1	NA	NA	0	NA	NA	1	4	NA	1	1	0.000000153	1	0.130947004	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	22016946	C	G	ZNF43	CCDS12413.2	r.?	-	-	intronic	36	0	0	42	19	45.2	31	3	9.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5.384331439	2	3	1	2	1	0.615668561	NA	4	NA	2	NA	0.384331439	2.256391218	1.128195609	2	1.179157343	1.179157343	1	NA	NA	0	NA	NA	0	4	NA	1	1	7.64E-33	1	0.000505952	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	22025395	C	A	-	-	-	-	-	-	43	0	0	34	10	29.4	36	1	2.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	4.362325493	2	2	1	2	1	0.637674507	NA	3	NA	2	NA	0.362325493	1.467652695	1.467652695	1	0.311759149	0.311759149	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.15E-15	1	0.165106833	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	22031042	A	G	ABCC9	CCDS8693.1	r.?	-	-	intronic	50	0	0	48	8	16.7	30	2	6.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.833666667	0.833666667	1	0.654719298	0.654719298	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.23E-10	1	0.009909649	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	22046636	C	G	-	-	-	-	-	-	45	0	0	38	4	10.5	23	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5.384331439	2	3	1	2	1	0.615668561	NA	4	NA	2	NA	0.384331439	0.524161677	0.524161677	1	0	0	1	NA	NA	0	NA	NA	0	3	NA	1	1	0.0000403	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	22095072	C	T	-	-	-	-	-	-	53	0	0	42	5	11.9	27	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	4	4	0	0	1	1	NA	NA	NA	NA	NA	NA	0.7130499	0.7130499	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.00000228	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	2335835	C	A	CNTN4	CCDS43041.1	r.?	-	-	intronic	35	0	0	43	7	16.3	38	6	15.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.37044448	5	2	3	1	2	0.62955552	1	2	NA	2	NA	0.37044448	NA	0.874081053	0.874081053	1	1.859964912	1.859964912	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.15E-09	1	3.76E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	22145509	C	T	-	-	-	-	-	-	44	0	0	42	26	61.9	34	12	35.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	4	4	0	0	1	1	NA	NA	NA	NA	NA	NA	3.709057884	0.927264471	4	3.802491228	0.950622807	4	NA	NA	1	NA	NA	1	4	NA	1	1	2.30E-49	1	1.21E-19	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	22160585	C	T	EFHA1	CCDS9297.1	r.?	-	-	intronic	52	0	0	25	14	56	29	11	37.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.235528942	1.117764471	2	3.324561404	1.662280702	2	NA	NA	1	NA	NA	1	4	NA	1	1	2.58E-26	1	1.56E-18	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	22	22168797	T	C	MAPK1	CCDS13795.1	r.?	-	-	intronic	28	0	0	27	6	22.2	32	7	21.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.292921926	5	3	4	0	1	0.707078074	1	3	NA	1	NA	0.292921926	NA	1.173256212	1.173256212	1	2.578052632	0.859350877	3	NA	NA	0	NA	NA	1	4	NA	1	1	4.23E-09	1	2.36E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	8546731	G	A	LMCD1	CCDS33688.1	r.?	-	-	intronic	42	0	0	54	20	37	21	3	14.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.37044448	5	2	3	1	2	0.62955552	1	2	NA	2	NA	0.37044448	NA	1.984110366	0.992055183	2	1.683385965	1.683385965	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.61E-32	1	0.000155401	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	22222067	T	G	-	-	-	-	-	-	53	0	0	30	9	30	43	3	7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.661749236	3	2	2	0	1	0.338250764	1	2	NA	1	NA	0.661749236	NA	1.396129561	1.396129561	1	0.684035088	0.684035088	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.54E-14	1	0.001328364	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	22239523	G	A	ZNF257	CCDS46030.1	r.?	-	-	intronic	52	0	0	40	6	15	24	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5.384331439	2	3	1	2	1	0.615668561	NA	4	NA	2	NA	0.384331439	0.748802395	0.748802395	1	0	0	1	NA	NA	0	NA	NA	0	3	NA	1	1	5.18E-08	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	22290665	T	G	-	-	-	-	-	-	33	0	0	32	7	21.9	32	2	6.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.093251497	1.093251497	1	0.729859649	0.729859649	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.36E-10	1	0.011224977	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	22296022	C	T	-	-	-	-	-	-	52	0	0	47	14	29.8	29	3	10.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.37044448	5	2	3	1	2	0.62955552	1	2	NA	2	NA	0.37044448	NA	1.598013213	0.980643613	1.62955552	1.212508772	1.212508772	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.79E-21	1	0.000414371	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	22304902	T	C	-	-	-	-	-	-	47	0	0	46	11	23.9	25	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.37044448	5	2	3	1	2	0.62955552	1	2	NA	2	NA	0.37044448	NA	1.281628047	1.281628047	1	0	0	1	NA	NA	0	NA	NA	1	4	NA	1	1	5.55E-16	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	22	22307083	C	A	PPM1F	CCDS13796.1	r.82g>u	c.?	p.?	5'UTR variant	12	0	0	16	3	18.8	2	0	0	3	0	0	0	0	NA	0	0	NA	1	TRUE	FALSE	3.292921926	5	3	4	0	1	0.707078074	1	3	NA	1	NA	0.292921926	NA	0.993568324	0.993568324	1	0	0	1	NA	NA	0	NA	NA	1	4	NA	1	1	0.0000667	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	12079581	G	T	SYN2	ENST00000341648	r.?	-	-	intronic	62	0	0	51	24	47.1	41	10	24.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.37044448	5	2	3	1	2	0.62955552	1	2	NA	2	NA	0.37044448	NA	2.525718871	1.262859435	2	2.872350877	0.957450292	3	NA	NA	0	NA	NA	1	4	NA	1	1	1.20E-41	1	9.51E-15	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	22351194	C	T	PPP3CC	CCDS34859.1	r.?	-	-	intronic	39	0	0	25	8	32	27	6	22.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1	2.620991218	1	2	0	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0.95744511	0.95744511	1	2.085228471	2.085228471	1	NA	NA	0	NA	NA	1	4	NA	1	1	3.92E-13	1	4.23E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	12302987	G	A	ENSG00000224182	ENST00000445303	r.?	-	-	intronic	24	0	0	40	21	52.5	36	12	33.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.37044448	5	2	3	1	2	0.62955552	1	2	NA	2	NA	0.37044448	NA	2.815291735	1.407645868	2	3.920052632	1.306684211	3	NA	NA	0	NA	NA	1	4	NA	1	1	5.72E-38	1	2.73E-19	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	22379680	T	C	-	-	-	-	-	-	55	0	0	39	13	33.3	40	8	20	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	4.362325493	2	2	1	2	1	0.637674507	NA	3	NA	2	NA	0.362325493	1.662341317	0.831170659	2	2.226851064	0.94265209	2.362325493	NA	NA	0	NA	NA	1	4	NA	1	1	8.79E-21	1	2.61E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	22390778	C	G	ENSG00000224369	ENST00000412505	r.?	-	-	intronic	45	0	0	40	17	42.5	29	3	10.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.696606786	0.848303393	2	0.903508772	0.903508772	1	NA	NA	1	NA	NA	1	4	NA	1	1	6.07E-29	1	0.000414371	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	22407673	C	T	-	-	-	-	-	-	51	0	0	18	10	55.6	22	2	9.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1	1	1	1	0	0	1	1	NA	NA	NA	NA	NA	NA	1.663560878	1.663560878	1	0.707245614	0.707245614	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.12E-19	1	0.005403392	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	22427697	A	T	-	-	-	-	-	-	56	0	0	36	8	22.2	29	5	17.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.108227545	1.108227545	1	1.68077193	1.68077193	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.04E-11	1	0.000000336	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	22428712	T	C	-	-	-	-	-	-	44	0	0	49	5	10.2	35	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	5.338372568	4.32434803	3	2	2	2	0.661627432	0.67565197	4	3	2	2	0.338372568	0.32434803	0.747699631	0.747699631	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	0.00000496	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	13570073	A	T	-	-	-	-	-	-	18	0	0	20	11	55	12	1	8.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.37044448	5	2	3	1	2	0.62955552	1	2	NA	2	NA	0.37044448	NA	2.949353246	1.474676623	2	0.977070175	0.977070175	1	NA	NA	0	NA	NA	1	4	NA	1	1	7.87E-21	1	0.058377193	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	21	22457626	G	A	NCAM2	CCDS42910.1	r.?	-	-	intronic	52	0	0	39	6	15.4	37	3	8.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.559012765	5	2	3	2	2	0.440987235	1	3	NA	2	NA	0.559012765	NA	1.008858425	1.008858425	1	0.953526316	0.953526316	1	NA	NA	0	NA	NA	1	4	NA	1	1	4.43E-08	1	0.000855237	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	48850165	C	T	STON1-GTF2A1L	CCDS1840.1	r.?	-	-	intronic	53	0	0	66	15	22.7	37	8	21.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	1.814187625	0.907093812	2	2.758736842	0.919578947	3	NA	NA	1	NA	NA	1	4	NA	1	1	6.45E-21	1	1.33E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	21	22509857	G	T	NCAM2	CCDS42910.1	r.?	-	-	intronic	40	0	0	44	4	9.1	33	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.559012765	5	2	3	2	2	0.440987235	1	3	NA	2	NA	0.559012765	NA	0.596143615	0.596143615	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	0.0000723	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	14487415	T	C	SLC6A6	CCDS33705.1	r.?	-	-	intronic	32	0	0	59	5	8.5	27	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.37044448	5	2	3	1	2	0.62955552	1	2	NA	2	NA	0.37044448	NA	0.455809138	1.230438467	0.37044448	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	0.0000125	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	22532315	G	A	-	-	-	-	-	-	50	0	0	40	24	60	30	7	23.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.395209581	1.19760479	2	2.043859649	1.021929825	2	NA	NA	1	NA	NA	1	4	NA	1	1	3.47E-45	1	1.44E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	18098884	C	T	AC139618.1	ENST00000448265	r.?	-	-	intronic	51	0	0	52	16	30.8	29	1	3.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.37044448	5	2	3	1	2	0.62955552	1	2	NA	2	NA	0.37044448	NA	1.651637818	1.013551117	1.62955552	0.400245614	0.400245614	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.33E-24	1	0.135292269	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	22100123	T	C	-	-	-	-	-	-	46	0	0	42	14	33.3	35	7	20	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.37044448	5	2	3	1	2	0.62955552	1	2	NA	2	NA	0.37044448	NA	1.785699329	1.095819877	1.62955552	2.354385965	1.177192982	2	NA	NA	0	NA	NA	1	4	NA	1	1	2.83E-22	1	4.65E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	22587796	C	T	-	-	-	-	-	-	56	0	0	38	8	21.1	22	1	4.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.842315369	0.842315369	1	0.394736842	0.394736842	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.67E-11	1	0.104413009	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	22589101	G	T	-	-	-	-	-	-	53	0	0	46	4	8.7	47	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	4	4	0	0	1	1	NA	NA	NA	NA	NA	NA	0.521305389	0.521305389	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.0000862	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	22590924	G	A	ZNF98	CCDS46031.1	r.?	-	-	intronic	40	0	0	51	11	21.6	38	2	5.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5.384331439	2	3	1	2	1	0.615668561	NA	4	NA	2	NA	0.384331439	1.078275449	1.078275449	1	0.644281847	0.644281847	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.94E-15	1	0.015598339	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	22654675	G	A	-	-	-	-	-	-	36	0	0	33	7	21.2	24	5	20.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	4.362325493	2	2	1	2	1	0.637674507	NA	3	NA	2	NA	0.362325493	1.058307385	1.058307385	1	2.315925106	0.980358174	2.362325493	NA	NA	0	NA	NA	0	4	NA	1	1	2.98E-10	1	0.000000123	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	21	22656036	G	T	NCAM2	CCDS42910.1	r.?	-	-	intronic	37	0	0	59	7	11.9	40	1	2.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.559012765	5	2	3	2	2	0.440987235	1	3	NA	2	NA	0.559012765	NA	0.779572419	0.779572419	1	0.294298246	0.294298246	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.12E-08	1	0.181679879	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	22675735	C	A	-	-	-	-	-	-	50	0	0	49	23	46.9	31	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	5.338372568	4.32434803	3	2	2	2	0.661627432	0.67565197	4	3	2	2	0.338372568	0.32434803	3.437952223	1.029828802	3.338372568	0	NA	0	NA	NA	0	NA	NA	0	NA	NA	1	1	6.14E-40	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	22694450	G	A	PEBP4	CCDS43724.1	r.?	-	-	intronic	40	0	0	18	13	72.2	20	3	15	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1	2.620991218	1	2	0	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	2.160235529	2.160235529	1	1.408938156	1.408938156	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.02E-26	1	0.0001337	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	22700021	G	T	KIAA0528	CCDS31758.1	r.?	-	-	upstream	43	0	0	36	14	38.9	22	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.941894212	0.970947106	2	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	2.09E-23	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	22761141	G	C	-	-	-	-	-	-	54	0	0	45	10	22.2	43	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.661749236	3	2	2	0	1	0.338250764	1	2	NA	1	NA	0.661749236	NA	1.033135875	1.033135875	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	2.66E-14	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	22372506	T	C	-	-	-	-	-	-	58	0	0	35	7	20	27	4	14.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.37044448	5	2	3	1	2	0.62955552	1	2	NA	2	NA	0.37044448	NA	1.07249209	1.07249209	1	1.742245614	1.742245614	1	NA	NA	0	NA	NA	1	4	NA	1	1	4.65E-10	1	0.00001	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	22772140	T	A	-	-	-	-	-	-	52	0	0	52	16	30.8	35	8	22.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	4	4	0	0	1	1	NA	NA	NA	NA	NA	NA	1.845540918	0.922770459	2	2.46677193	0.82225731	3	NA	NA	1	NA	NA	1	4	NA	1	1	1.33E-24	1	8.15E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	22791839	G	A	ENSG00000224154	ENST00000430965	r.?	-	-	downstream	37	0	0	50	16	32	26	12	46.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.499724906	5.626372055	2	3	2	2	0.500275094	0.373627945	3	3	2	3	0.499724906	0.626372055	2.07735708	1.03867854	2	5.728015469	1.90933849	3	NA	NA	0	NA	NA	1	4	NA	1	1	6.40E-25	1	2.21E-21	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	22434270	T	C	-	-	-	-	-	-	37	0	0	47	5	10.6	33	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.37044448	5	2	3	1	2	0.62955552	1	2	NA	2	NA	0.37044448	NA	0.568420807	0.568420807	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	0.00000402	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	22834169	C	A	HS3ST2	CCDS10606.1	r.?	-	-	intronic	32	0	0	43	7	16.3	37	4	10.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.499724906	5.626372055	2	3	2	2	0.500275094	0.373627945	3	3	2	3	0.499724906	0.626372055	1.058153762	1.058153762	1	1.339016603	1.339016603	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.15E-09	1	0.0000362	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	61372071	G	A	C2orf74	CCDS46298.1	r.?	-	-	upstream	19	0	0	57	15	26.3	36	5	13.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	2.1019002	1.0509501	2	1.775298246	1.775298246	1	NA	NA	1	NA	NA	1	4	NA	1	1	5.53E-22	1	0.00000104	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	22	22861670	G	A	ZNF280B	CCDS13799.1	r.?	-	-	intronic	48	0	0	37	11	29.7	28	1	3.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.292921926	5	3	4	0	1	0.707078074	1	3	NA	1	NA	0.292921926	NA	1.569626554	1.569626554	1	0.423789474	0.423789474	1	NA	NA	0	NA	NA	1	4	NA	1	1	3.70E-17	1	0.130947004	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	21	22888339	G	A	NCAM2	CCDS42910.1	r.?	-	-	intronic	56	0	0	61	18	29.5	37	13	35.1	106	0	0	485	188	38.8	465	111	23.9	1.24E-114	TRUE	TRUE	4.559012765	5	2	3	2	2	0.440987235	1	3	NA	2	NA	0.559012765	NA	1.932553476	0.966276738	2	4.131947368	1.377315789	3	2.541799148	0.993273337	2.559012765	2.813491228	0.937830409	3	4	3	1	1	4.08E-27	9.28E-295	3.89E-21	2.80E-147	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	3	22926678	T	G	-	-	-	-	-	-	63	0	0	50	6	12	38	2	5.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.37044448	5	2	3	1	2	0.62955552	1	2	NA	2	NA	0.37044448	NA	0.643495254	0.643495254	1	0.623912281	0.623912281	1	NA	NA	0	NA	NA	1	4	NA	1	1	0.000000206	1	0.015598339	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	22967263	C	T	-	-	-	-	-	-	47	0	0	31	8	25.8	29	4	13.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.661749236	3	2	2	0	1	0.338250764	1	2	NA	1	NA	0.661749236	NA	1.200671423	1.200671423	1	1.348526316	1.348526316	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.78E-12	1	0.0000134	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	22581915	C	A	-	-	-	-	-	-	63	0	0	34	14	41.2	37	4	10.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.37044448	5	2	3	1	2	0.62955552	1	2	NA	2	NA	0.37044448	NA	2.209333705	1.104666852	2	1.271368421	1.271368421	1	NA	NA	0	NA	NA	1	4	NA	1	1	7.74E-24	1	0.0000362	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	22986664	T	G	-	-	-	-	-	-	42	0	0	53	22	41.5	46	1	2.2	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	5.338372568	4.32434803	3	2	2	2	0.661627432	0.67565197	4	3	2	2	0.338372568	0.32434803	3.042111242	1.014037081	3	0.244118113	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	9.50E-37	1	0.205924651	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	26204241	G	A	-	-	-	-	-	-	40	0	0	43	5	11.6	34	5	14.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.37044448	5	2	3	1	2	0.62955552	1	2	NA	2	NA	0.37044448	NA	0.622045412	0.622045412	1	1.730473684	1.730473684	1	NA	NA	0	NA	NA	1	4	NA	1	1	0.00000257	1	0.000000771	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	23091810	C	T	EPHB2	CCDS230.1	r.?	-	-	intronic	18	0	0	48	15	31.2	30	2	6.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.557508982	0.778754491	2	0.788719298	0.788719298	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.86E-23	1	0.009909649	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	23113523	T	A	-	-	-	-	-	-	46	0	0	35	16	45.7	30	6	20	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.824351297	0.912175649	2	1.754385965	1.754385965	1	NA	NA	1	NA	NA	1	4	NA	1	1	5.66E-28	1	8.37E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	23175539	C	T	-	-	-	-	-	-	46	0	0	45	19	42.2	33	4	12.1	2	1	50	4	0	0	2	0	0	1	TRUE	FALSE	3	5.384331439	2	3	1	2	1	0.615668561	NA	4	NA	2	NA	0.384331439	2.106630739	1.053315369	2	1.470907613	1.470907613	1	0	NA	0	0	NA	0	4	NA	1	0.009975	4.11E-32	1	0.0000228	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	23207051	C	G	-	-	-	-	-	-	55	0	0	40	20	50	33	7	21.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.996007984	0.998003992	2	1.859649123	1.859649123	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.19E-35	1	2.98E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	23240030	C	T	NUPL2	CCDS5379.1	r.1197c>u	c.938C>T	p.S313L	missense	47	0	0	92	21	22.8	44	6	13.6	191	0	0	200	52	26	352	10	2.8	0.003264971	TRUE	TRUE	5	4.260310284	3	2	2	2	1	0.739689716	NA	3	NA	2	NA	0.260310284	1.594179641	0.79708982	2	1.500384655	1.500384655	1	1.817924152	0.908962076	2	0.308902723	1.186671224	0.260310284	4	3	1	1	9.72E-29	4.10E-72	9.37E-08	0.0000147	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	7	23240901	C	T	NUPL2	CCDS5379.1	r.?	-	-	downstream	54	0	0	65	16	24.6	45	6	13.3	178	1	0.6	252	52	20.6	158	15	9.5	9.60E-11	TRUE	TRUE	5	4.260310284	3	2	2	2	1	0.739689716	NA	3	NA	2	NA	0.260310284	1.720035928	0.860017964	2	1.467287934	1.467287934	1	1.440355289	0.720177645	2	1.04806281	1.04806281	1	4	3	1	0.590259991	7.85E-23	2.67E-66	0.000000108	5.74E-15	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	7	23241050	C	T	NUPL2	CCDS5379.1	r.?	-	-	downstream	39	0	0	68	26	38.2	40	6	15	33	0	0	48	7	14.6	25	3	12	0.001950677	TRUE	TRUE	5	4.260310284	3	2	2	2	1	0.739689716	NA	3	NA	2	NA	0.260310284	2.6709501	0.8903167	3	1.654836016	1.654836016	1	1.020834331	1.020834331	1	1.323868813	1.323868813	1	4	3	1	1	5.33E-42	4.81E-09	5.18E-08	0.00026475	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	7	23241367	C	T	NUPL2	CCDS5379.1	r.?	-	-	downstream	29	0	0	63	14	22.2	28	7	25	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5	4.260310284	3	2	2	2	1	0.739689716	NA	3	NA	2	NA	0.260310284	1.552227545	1.552227545	1	2.758060027	1.220213015	2.260310284	NA	NA	1	NA	NA	0	4	NA	1	1	1.81E-19	1	8.44E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	23241640	C	T	NUPL2	CCDS5379.1	r.?	-	-	downstream	42	0	0	68	20	29.4	49	5	10.2	0	0	NA	1	1	100	0	0	NA	1	TRUE	FALSE	5	4.260310284	3	2	2	2	1	0.739689716	NA	3	NA	2	NA	0.260310284	2.055652695	1.027826347	2	1.125288491	1.125288491	1	6.992015968	6.992015968	1	NA	NA	0	4	NA	1	1	6.23E-30	0.005	0.00000496	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	23247713	T	A	-	-	-	-	-	-	61	0	0	39	11	28.2	32	2	6.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.407748503	1.407748503	1	0.605859649	0.605859649	1	NA	NA	1	NA	NA	1	4	NA	1	1	7.20E-17	1	0.011224977	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	22	23256838	G	A	-	-	-	-	-	-	33	0	0	33	17	51.5	30	6	20	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.292921926	5	3	4	0	1	0.707078074	1	3	NA	1	NA	0.292921926	NA	2.721743015	1.005417258	2.707078074	2.354385965	1.177192982	2	NA	NA	0	NA	NA	1	4	NA	1	1	8.25E-31	1	8.37E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	23262051	G	C	-	-	-	-	-	-	57	0	0	33	11	33.3	30	8	26.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.661749236	3	2	2	0	1	0.338250764	1	2	NA	1	NA	0.661749236	NA	1.549703813	1.549703813	1	2.609105263	1.304552632	2	NA	NA	0	NA	NA	1	4	NA	1	1	8.54E-18	1	2.07E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	21	23293511	T	C	-	-	-	-	-	-	53	0	0	49	16	32.7	50	19	38	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.559012765	5	2	3	2	2	0.440987235	1	3	NA	2	NA	0.559012765	NA	2.142186396	1.071093198	2	4.473333333	1.491111111	3	NA	NA	0	NA	NA	1	4	NA	1	1	4.37E-25	1	5.00E-31	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	23304394	G	A	-	-	-	-	-	-	62	0	0	69	8	11.6	44	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.293868134	5.486552635	2	3	2	2	0.706131866	0.513447365	3	3	2	3	0.293868134	0.486552635	0.729162556	0.729162556	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	2.49E-09	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	23324752	C	T	AC006039.1	ENST00000504702	r.?	-	-	intronic	53	0	0	82	21	25.6	34	9	26.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5	4.260310284	3	2	2	2	1	0.739689716	NA	3	NA	2	NA	0.260310284	1.789956088	0.894978044	2	2.923543629	1.293425796	2.260310284	NA	NA	1	NA	NA	0	4	NA	1	1	6.53E-30	1	9.15E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	44962054	C	A	ZDHHC3	CCDS46810.1	r.?	-	-	intronic	50	0	0	38	6	15.8	45	0	0	2	0	0	0	0	NA	0	0	NA	1	TRUE	FALSE	5	5	3	3	2	2	1	1	NA	NA	NA	NA	NA	NA	1.104738523	1.104738523	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	3.76E-08	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	22	23343967	C	G	-	-	-	-	-	-	47	0	0	37	5	13.5	17	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.292921926	5	3	4	0	1	0.707078074	1	3	NA	1	NA	0.292921926	NA	0.713466616	0.713466616	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	0.00000119	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	23373310	G	A	PTCHD1	CCDS35215.2	r.?	-	-	intronic	28	0	0	54	10	18.5	43	7	16.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5.338372568	4.32434803	3	2	2	2	0.661627432	0.67565197	4	3	2	2	0.338372568	0.32434803	1.356121879	1.356121879	1	1.80869329	1.80869329	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.91E-13	1	2.15E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	55556232	G	A	ERC2	CCDS46851.1	r.?	-	-	intronic	55	0	0	44	10	22.7	24	2	8.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	1.213575771	1.213575771	1	0.977070175	0.977070175	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.08E-14	1	0.006413403	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	23393083	T	C	-	-	-	-	-	-	39	0	0	30	7	23.3	38	2	5.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.163139721	1.163139721	1	0.517912281	0.517912281	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.44E-10	1	0.015598339	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	61395202	A	G	-	-	-	-	-	-	47	0	0	32	6	18.8	32	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	1.005075969	1.005075969	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	1.27E-08	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	23426822	C	T	IGF2BP3	CCDS5382.1	r.?	-	-	intronic	42	0	0	74	23	31.1	43	10	23.3	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	NA	8.289880778	NA	6	NA	2	NA	0.710119222	NA	6	NA	3	NA	0.289880778	NA	NA	1	3.50940187	0.945900026	3.710119222	NA	NA	1	NA	NA	0	NA	NA	1	1	7.70E-35	1	1.61E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	81335399	G	A	-	-	-	-	-	-	37	0	0	46	19	41.3	30	7	23.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.474702595	1.237351297	2	2.509859649	1.254929825	2	NA	NA	1	NA	NA	1	4	NA	1	1	6.97E-32	1	1.44E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	23428654	C	G	IGF2BP3	CCDS5382.1	r.?	-	-	intronic	45	0	0	78	30	38.5	54	17	31.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	10.19837984	8.289880778	8	6	2	2	0.801620163	0.710119222	8	6	3	3	0.198379837	0.289880778	4.693302385	0.97744141	4.801620163	4.74447034	1.007293046	4.710119222	NA	NA	1	NA	NA	0	4	NA	1	1	2.54E-48	1	3.02E-26	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	66565072	C	T	-	-	-	-	-	-	50	0	0	51	17	33.3	29	3	10.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	1.780267541	1.081659289	1.645867197	1.212508772	1.212508772	1	NA	NA	0	NA	NA	1	4	NA	1	1	9.59E-27	1	0.000414371	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	23429247	C	T	IGF2BP3	CCDS5382.1	r.?	-	-	intronic	50	0	0	92	36	39.1	46	9	19.6	130	2	1.5	536	162	30.2	428	81	18.9	2.36E-75	TRUE	TRUE	10.19837984	8.289880778	8	6	2	2	0.801620163	0.710119222	8	6	3	3	0.198379837	0.289880778	4.76644476	0.992674264	4.801620163	2.952114878	0.984038293	3	3.681499533	0.96840278	3.801620163	2.846682204	1.050390027	2.710119222	4	3	1	0.138325346	5.21E-58	4.31E-233	1.82E-12	5.48E-99	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	3	69954667	A	T	MITF	CCDS43106.1	r.?	-	-	intronic	58	0	0	44	11	25	28	2	7.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	1.336537193	1.336537193	1	0.835807018	0.835807018	1	NA	NA	0	NA	NA	1	4	NA	1	1	3.22E-16	1	0.008668191	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	23430198	C	T	IGF2BP3	CCDS5382.1	r.?	-	-	intronic	39	0	0	81	33	40.7	47	8	17	184	0	0	628	225	35.8	438	76	17.4	8.20E-68	TRUE	TRUE	10.19837984	8.289880778	8	6	2	2	0.801620163	0.710119222	8	6	3	3	0.198379837	0.289880778	4.961491093	0.992298219	5	2.560507802	0.944795263	2.710119222	4.364161698	1.091040425	4	2.620755045	0.967025739	2.710119222	4	3	1	1	4.96E-54	0	1.03E-10	6.56E-90	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	7	23430290	C	T	IGF2BP3	CCDS5382.1	r.?	-	-	intronic	42	0	0	89	36	40.4	55	13	23.6	131	0	0	392	126	32.1	292	57	19.5	2.33E-54	TRUE	TRUE	10.19837984	8.289880778	8	6	2	2	0.801620163	0.710119222	8	6	3	3	0.198379837	0.289880778	4.924919905	0.984983981	5	3.554587302	0.958078997	3.710119222	3.913117053	0.978279263	4	2.937053067	0.979017689	3	4	3	1	1	1.17E-58	1.08E-185	1.46E-18	5.18E-71	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	7	23430541	C	T	IGF2BP3	CCDS5382.1	r.?	-	-	intronic	25	0	0	83	33	39.8	38	12	31.6	2	0	0	1	0	0	0	0	NA	1	TRUE	FALSE	10.19837984	8.289880778	8	6	2	2	0.801620163	0.710119222	8	6	3	3	0.198379837	0.289880778	4.85177753	1.010445926	4.801620163	4.75953215	1.010490802	4.710119222	0	NA	0	NA	NA	0	4	NA	1	1	1.36E-53	1	5.86E-19	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	23431850	C	T	IGF2BP3	CCDS5382.1	r.?	-	-	intronic	54	0	0	75	33	44	43	12	27.9	147	0	0	501	170	33.9	466	83	17.8	7.10E-75	TRUE	TRUE	10.19837984	8.289880778	8	6	2	2	0.801620163	0.710119222	8	6	3	3	0.198379837	0.289880778	5.363774154	1.072754831	5	4.202245158	1.05056129	4	4.132544178	1.033136044	4	2.681002287	0.989256216	2.710119222	4	3	1	1	1.93E-55	1.16E-254	3.24E-18	4.94E-99	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	7	23431854	C	T	IGF2BP3	CCDS5382.1	r.?	-	-	intronic	55	0	0	74	33	44.6	43	12	27.9	150	0	0	508	174	34.3	472	82	17.4	4.53E-73	TRUE	TRUE	10.19837984	8.289880778	8	6	2	2	0.801620163	0.710119222	8	6	3	3	0.198379837	0.289880778	5.436916529	0.937137623	5.801620163	4.202245158	1.05056129	4	4.181305761	1.04532644	4	2.620755045	0.967025739	2.710119222	4	3	1	1	1.09E-55	1.82E-261	3.24E-18	6.53E-97	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	7	23433651	C	A	IGF2BP3	CCDS5382.1	r.?	-	-	intronic	48	0	0	100	38	38	60	7	11.7	0	0	NA	0	0	NA	1	0	0	1	TRUE	FALSE	10.19837984	8.289880778	8	6	2	2	0.801620163	0.710119222	8	6	3	3	0.198379837	0.289880778	4.632350406	0.964747366	4.801620163	1.76223184	1.76223184	1	NA	NA	0	0	NA	0	4	NA	1	1	1.52E-60	1	2.39E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	23434102	C	T	IGF2BP3	CCDS5382.1	r.?	-	-	intronic	33	0	0	108	39	36.1	67	22	32.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	10.19837984	8.289880778	8	6	2	2	0.801620163	0.710119222	8	6	3	3	0.198379837	0.289880778	4.400732886	0.916509998	4.801620163	4.940273878	0.988054776	5	NA	NA	1	NA	NA	0	4	NA	1	1	4.93E-61	1	5.21E-34	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	23464455	A	G	-	-	-	-	-	-	51	0	0	36	6	16.7	33	4	12.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.833666667	0.833666667	1	1.182403509	1.182403509	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.68E-08	1	0.0000228	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	23488416	T	G	GGA2	CCDS10611.1	r.?	-	-	intronic	40	1	2.5	31	7	22.6	32	6	18.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.499724906	5.626372055	2	3	2	2	0.500275094	0.373627945	3	3	2	3	0.499724906	0.626372055	1.467133438	1.467133438	1	2.330880753	0.981990779	2.373627945	NA	NA	0	NA	NA	1	4	NA	0.181679879	1	1.85E-10	1	1.27E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	76647034	T	C	ROBO2	ENST00000487694	r.?	-	-	intronic	49	0	0	33	7	21.2	29	4	13.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	1.13338354	1.13338354	1	1.624526316	1.624526316	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.98E-10	1	0.0000134	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	21	23537142	C	T	-	-	-	-	-	-	51	0	0	59	7	11.9	30	2	6.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.559012765	5	2	3	2	2	0.440987235	1	3	NA	2	NA	0.559012765	NA	0.779572419	0.779572419	1	0.788719298	0.788719298	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.12E-08	1	0.009909649	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	23549857	C	A	-	-	-	-	-	-	57	0	0	45	20	44.4	30	6	20	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	2.21645509	1.108227545	2	1.954385965	1.954385965	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.68E-34	1	8.37E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	23554079	C	T	-	-	-	-	-	-	30	0	0	23	11	47.8	24	6	25	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.661749236	3	2	2	0	1	0.338250764	1	2	NA	1	NA	0.661749236	NA	2.224499767	1.112249884	2	2.442982456	1.221491228	2	NA	NA	0	NA	NA	1	4	NA	1	1	6.25E-20	1	1.95E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	21	23583098	T	A	-	-	-	-	-	-	53	0	0	55	20	36.4	44	9	20.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.559012765	5	2	3	2	2	0.440987235	1	3	NA	2	NA	0.559012765	NA	2.384574459	0.931833749	2.559012765	2.413245614	0.804415205	3	NA	NA	0	NA	NA	1	4	NA	1	1	4.08E-32	1	1.18E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	23594509	C	T	AC022409.1	ENST00000501220	r.?	-	-	upstream	39	0	0	46	7	15.2	21	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5.384331439	2	3	1	2	1	0.615668561	NA	4	NA	2	NA	0.384331439	0.758786427	0.758786427	1	0	0	1	NA	NA	0	NA	NA	0	3	NA	1	1	3.53E-09	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	23601951	C	A	-	-	-	-	-	-	28	0	0	37	10	27	22	4	18.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	4.362325493	2	2	1	2	1	0.637674507	NA	3	NA	2	NA	0.362325493	1.347844311	1.347844311	1	2.026434468	2.026434468	1	NA	NA	0	NA	NA	0	4	NA	1	1	3.01E-15	1	0.00000425	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	23608785	C	A	UBE2E2	CCDS2637.1	r.?	-	-	intronic	59	0	0	41	12	29.3	35	5	14.3	182	1	0.5	399	86	21.6	348	35	10.1	7.02E-24	TRUE	TRUE	3.37044448	5	2	3	1	2	0.62955552	1	2	NA	2	NA	0.37044448	NA	1.571200911	1.571200911	1	1.683385965	1.683385965	1	1.158291457	1.158291457	1	1.188964912	1.188964912	1	4	3	1	0.598393535	1.69E-18	2.75E-110	0.000000895	9.43E-34	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	X	23612465	G	T	-	-	-	-	-	-	30	0	0	65	46	70.8	35	7	20	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5.338372568	4.32434803	3	2	2	2	0.661627432	0.67565197	4	3	2	2	0.338372568	0.32434803	5.189915083	1.55462429	3.338372568	2.219255571	0.954786264	2.32434803	NA	NA	1	NA	NA	0	4	NA	1	1	1.60E-90	1	4.65E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	23620876	G	T	-	-	-	-	-	-	34	0	0	27	12	44.4	23	5	21.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.293868134	5.486552635	2	3	2	2	0.706131866	0.513447365	3	3	2	3	0.293868134	0.486552635	2.790932541	1.216692669	2.293868134	2.660090694	1.058343505	2.513447365	NA	NA	0	NA	NA	0	4	NA	1	1	3.96E-21	1	9.75E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	23621153	G	T	PALB2	CCDS32406.1	r.?	-	-	intronic	21	0	0	46	6	13	32	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.499724906	5.626372055	2	3	2	2	0.500275094	0.373627945	3	3	2	3	0.499724906	0.626372055	0.843926314	0.843926314	1	0	0	1	NA	NA	0	NA	NA	0	3	NA	1	1	0.000000123	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	23624186	A	G	-	-	-	-	-	-	43	0	0	32	8	25	34	5	14.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.293868134	5.486552635	2	3	2	2	0.706131866	0.513447365	3	3	2	3	0.293868134	0.486552635	1.571471026	1.571471026	1	1.801996922	1.801996922	1	NA	NA	0	NA	NA	0	4	NA	1	1	3.69E-12	1	0.000000771	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	23662987	A	G	KLHL29	ENST00000486442	r.?	-	-	intronic	55	0	0	50	12	24	33	4	12.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	4	4	0	0	1	1	NA	NA	NA	NA	NA	NA	1.438083832	1.438083832	1	1.303403509	1.303403509	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.49E-17	1	0.0000228	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	23666235	G	T	-	-	-	-	-	-	51	0	0	51	19	37.3	39	9	23.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.293868134	5.486552635	2	3	2	2	0.706131866	0.513447365	3	3	2	3	0.293868134	0.486552635	2.34463477	1.022131453	2.293868134	2.831709448	0.943903149	3	NA	NA	0	NA	NA	0	4	NA	1	1	7.94E-31	1	3.62E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	23693832	A	G	-	-	-	-	-	-	55	0	0	88	10	11.4	41	0	0	0	0	NA	2	0	0	0	0	NA	1	FALSE	FALSE	10.19837984	8.289880778	8	6	2	2	0.801620163	0.710119222	8	6	3	3	0.198379837	0.289880778	1.389705122	1.389705122	1	0	NA	0	0	0	1	NA	NA	0	NA	NA	1	1	3.09E-11	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	23706578	T	C	ENSG00000224148	ENST00000451785	r.?	-	-	intronic	58	0	0	30	14	46.7	24	3	12.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.864271457	0.932135729	2	1.096491228	1.096491228	1	NA	NA	1	NA	NA	1	4	NA	1	1	8.24E-25	1	0.000233853	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	21	23713380	C	T	-	-	-	-	-	-	22	0	0	47	20	42.6	43	4	9.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.559012765	5	2	3	2	2	0.440987235	1	3	NA	2	NA	0.559012765	NA	2.79073824	1.090552684	2.559012765	1.094789474	1.094789474	1	NA	NA	0	NA	NA	1	4	NA	1	1	8.18E-34	1	0.000066	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	23717142	C	T	-	-	-	-	-	-	61	1	1.6	45	24	53.3	38	5	13.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	4.362325493	2	2	1	2	1	0.637674507	NA	3	NA	2	NA	0.362325493	2.660744511	1.330372255	2	1.469721702	1.469721702	1	NA	NA	0	NA	NA	0	4	NA	0.263440347	1	2.03E-43	1	0.00000137	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	23740989	A	C	-	-	-	-	-	-	48	0	0	56	20	35.7	46	7	15.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.293868134	5.486552635	2	3	2	2	0.706131866	0.513447365	3	3	2	3	0.293868134	0.486552635	2.244060625	0.978286673	2.293868134	1.863289334	1.863289334	1	NA	NA	0	NA	NA	0	4	NA	1	1	6.31E-32	1	3.53E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	21	23745517	G	A	-	-	-	-	-	-	38	0	0	51	11	21.6	52	6	11.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.559012765	5	2	3	2	2	0.440987235	1	3	NA	2	NA	0.559012765	NA	1.415022206	1.415022206	1	1.35377193	1.35377193	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.94E-15	1	0.000000261	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	23758835	G	T	STK31	CCDS43556.1	r.?	-	-	intronic	43	0	0	107	41	38.3	45	12	26.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	10.19837984	8.289880778	8	6	2	2	0.801620163	0.710119222	8	6	3	3	0.198379837	0.289880778	4.668921593	0.972363793	4.801620163	4.021503431	1.005375858	4	NA	NA	1	NA	NA	0	4	NA	1	1	2.22E-65	1	6.03E-18	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	23770750	G	A	ASAP3	CCDS44087.1	r.?	-	-	intronic	33	0	0	35	11	31.4	25	4	16	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.567493014	1.567493014	1	1.883508772	1.883508772	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.82E-17	1	0.00000727	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	23789710	G	A	KLHL29	ENST00000486442	r.?	-	-	intronic	36	0	0	45	19	42.2	24	6	25	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	4	4	0	0	1	1	NA	NA	NA	NA	NA	NA	2.528630739	0.842876913	3	2.692982456	0.897660819	3	NA	NA	1	NA	NA	1	4	NA	1	1	4.11E-32	1	1.95E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	23792246	C	T	ASAP3	CCDS44087.1	r.?	-	-	intronic	36	0	0	38	18	47.4	31	7	22.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	2.366215569	1.183107784	2	2.66045614	0.886818713	3	NA	NA	0	NA	NA	1	4	NA	1	1	1.16E-31	1	1.85E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	23795414	A	T	-	-	-	-	-	-	46	0	0	43	9	20.9	30	1	3.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	4.362325493	2	2	1	2	1	0.637674507	NA	3	NA	2	NA	0.362325493	1.043331337	1.043331337	1	0.367430425	0.367430425	1	NA	NA	0	NA	NA	0	4	NA	1	1	9.45E-13	1	0.139615808	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	23799215	G	A	SAT1	CCDS14207.1	r.?	-	-	upstream	11	0	0	61	34	55.7	20	6	30	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7.594031116	4.32434803	6	2	1	2	0.405968884	0.67565197	6	3	2	2	0.594031116	0.32434803	5.339428226	0.987691261	5.405968884	3.328883356	1.432179395	2.32434803	NA	NA	0	NA	NA	0	4	NA	1	1	8.06E-62	1	5.70E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	23827410	C	T	SOX5	CCDS8699.1	r.?	-	-	intronic	26	0	0	33	16	48.5	19	3	15.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	2.421127745	1.210563872	2	1.543964912	1.543964912	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.64E-28	1	0.000114071	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	23845033	C	T	SOX5	CCDS8699.1	r.?	-	-	intronic	39	0	0	40	9	22.5	33	3	9.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.123203593	1.123203593	1	0.889245614	0.889245614	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.64E-13	1	0.000609557	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	23851187	G	A	-	-	-	-	-	-	48	0	0	30	11	36.7	23	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.46506986	1.46506986	1	0	0	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.44E-18	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	23858000	G	T	-	-	-	-	-	-	44	0	0	63	18	28.6	30	6	20	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.860744679	5	4	4	0	1	0.139255321	1	4	NA	1	NA	0.860744679	NA	1.959889545	0.979944773	2	2.354385965	1.177192982	2	NA	NA	0	NA	NA	1	4	NA	1	1	7.98E-27	1	8.37E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	81151642	A	T	-	-	-	-	-	-	61	0	0	57	11	19.3	31	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	1.031806713	1.031806713	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	7.29E-15	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	81520064	C	T	-	-	-	-	-	-	58	0	0	35	7	20	32	3	9.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	1.069229754	1.069229754	1	1.106561404	1.106561404	1	NA	NA	0	NA	NA	1	4	NA	1	1	4.65E-10	1	0.000556213	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	21	23927858	A	G	-	-	-	-	-	-	53	0	0	54	21	38.9	50	16	32	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.559012765	5	2	3	2	2	0.440987235	1	3	NA	2	NA	0.559012765	NA	2.548350177	0.99583332	2.559012765	3.767017544	1.255672515	3	NA	NA	0	NA	NA	1	4	NA	1	1	2.12E-34	1	6.40E-25	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	81847345	C	T	-	-	-	-	-	-	52	0	0	54	9	16.7	24	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	0.892806845	0.892806845	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	8.48E-12	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	83177678	C	A	-	-	-	-	-	-	59	0	0	37	6	16.2	37	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	0.866076101	0.866076101	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	3.18E-08	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	23964170	G	A	GGTLC1	CCDS13163.1	r.?	-	-	downstream	27	0	0	30	7	23.3	26	2	7.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	4.362325493	2	2	1	2	1	0.637674507	NA	3	NA	2	NA	0.362325493	1.163139721	1.163139721	1	0.857337659	0.857337659	1	NA	NA	0	NA	NA	0	4	NA	1	1	1.44E-10	1	0.007502227	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	23972647	G	T	-	-	-	-	-	-	53	0	0	64	25	39.1	25	11	44	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.293868134	5.486552635	2	3	2	2	0.706131866	0.513447365	3	3	2	3	0.293868134	0.486552635	2.457780684	1.071456832	2.293868134	5.393732282	1.797910761	3	NA	NA	0	NA	NA	1	4	NA	1	1	9.90E-41	1	2.04E-19	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	24031479	C	G	-	-	-	-	-	-	40	0	0	20	5	25	7	2	28.6	3	0	0	0	0	NA	0	0	NA	1	TRUE	FALSE	3	4.362325493	2	2	1	2	1	0.637674507	NA	3	NA	2	NA	0.362325493	1.248003992	1.248003992	1	3.184397021	3.184397021	1	NA	NA	0	NA	NA	0	4	NA	1	1	4.55E-08	1	0.000516315	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	24045590	G	A	JPH4	CCDS9603.1	r.1358c>u	c.455C>T	p.A152V	missense	14	0	0	22	6	27.3	5	1	20	49	0	0	2	0	0	2	0	0	1	TRUE	TRUE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.089820359	1.089820359	1	1.754385965	1.754385965	1	0	0	1	0	0	1	4	NA	1	1	1.09E-09	1	0.024751247	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	24048826	C	T	-	-	-	-	-	-	18	0	0	27	12	44.4	30	5	16.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	2.21645509	1.108227545	2	1.965912281	1.965912281	1	NA	NA	0	NA	NA	1	4	NA	1	1	3.96E-21	1	0.000000401	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	24054212	T	A	-	-	-	-	-	-	33	0	0	40	5	12.5	33	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	0.624001996	0.624001996	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	0.00000178	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	24085663	T	G	-	-	-	-	-	-	53	0	0	33	16	48.5	32	4	12.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.661749236	3	2	2	0	1	0.338250764	1	2	NA	1	NA	0.661749236	NA	2.257076124	1.128538062	2	1.221491228	1.221491228	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.64E-28	1	0.0000201	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	24092070	G	C	EIF2S3	CCDS14210.1	r.?	-	-	intronic	32	0	0	69	4	5.8	45	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	7.594031116	4.32434803	6	2	1	2	0.405968884	0.67565197	6	3	2	2	0.594031116	0.32434803	0.555990731	0.555990731	1	0	NA	0	NA	NA	0	NA	NA	0	NA	NA	1	1	0.000416985	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	24116499	G	A	-	-	-	-	-	-	25	0	0	33	17	51.5	17	2	11.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	4.362325493	2	2	1	2	1	0.637674507	NA	3	NA	2	NA	0.362325493	2.570888224	1.285444112	2	1.313842127	1.313842127	1	NA	NA	0	NA	NA	1	4	NA	1	1	8.25E-31	1	0.003234386	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	24129889	C	T	PRKCB	CCDS10619.1	r.?	-	-	intronic	41	0	0	56	22	39.3	28	6	21.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.499724906	5.626372055	2	3	2	2	0.500275094	0.373627945	3	3	2	3	0.499724906	0.626372055	2.551254163	1.020613971	2.499724906	2.653236602	0.884412201	3	NA	NA	0	NA	NA	0	4	NA	1	1	4.34E-36	1	5.36E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	21	24155987	C	T	-	-	-	-	-	-	48	0	0	61	23	37.7	44	5	11.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.559012765	5	2	3	2	2	0.440987235	1	3	NA	2	NA	0.559012765	NA	2.469737832	0.965113526	2.559012765	1.342	1.342	1	NA	NA	0	NA	NA	1	4	NA	1	1	3.73E-37	1	0.00000288	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	24190834	G	A	-	-	-	-	-	-	52	0	0	52	22	42.3	29	8	27.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.661749236	3	2	2	0	1	0.338250764	1	2	NA	1	NA	0.661749236	NA	1.968542681	0.984271341	2	2.697052632	1.348526316	2	NA	NA	0	NA	NA	1	4	NA	1	1	5.59E-37	1	1.53E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	84863714	G	T	-	-	-	-	-	-	54	0	0	51	15	29.4	41	2	4.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	1.571767739	0.954978471	1.645867197	0.576824561	0.576824561	1	NA	NA	0	NA	NA	1	4	NA	1	1	8.22E-23	1	0.018015855	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	24217457	G	A	ZFX	CCDS14211.1	r.?	-	-	intronic	34	0	0	59	6	10.2	36	7	19.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7.594031116	4.32434803	6	2	1	2	0.405968884	0.67565197	6	3	2	2	0.594031116	0.32434803	0.977776803	0.977776803	1	2.152677904	0.926142676	2.32434803	NA	NA	0	NA	NA	0	4	NA	1	1	0.000000561	1	5.74E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	84938753	G	T	-	-	-	-	-	-	40	0	0	38	8	21.1	36	2	5.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	1.128037391	1.128037391	1	0.65922807	0.65922807	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.67E-11	1	0.014070883	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	89414930	G	A	EPHA3	CCDS2922.1	r.?	-	-	intronic	44	0	0	43	7	16.3	36	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	0.87142225	0.87142225	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	2.15E-09	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	24228476	G	C	ZFX	CCDS14211.1	r.1828g>c	c.1401G>C	p.K467N	missense	46	0	0	81	10	12.3	37	0	0	230	0	0	517	15	2.9	350	0	0	1	FALSE	FALSE	7.594031116	4.32434803	6	2	1	2	0.405968884	0.67565197	6	3	2	2	0.594031116	0.32434803	1.179083791	1.179083791	1	0	NA	0	0.277995365	0.277995365	1	0	NA	0	NA	NA	1	1	1.33E-11	9.17E-08	1	1	YES	1_1	0_0	somatic	custom.pulldown.HiSeq
PD9852b	X	24228546	G	A	ZFX	CCDS14211.1	r.1898g>a	c.1471G>A	p.D491N	missense	40	0	0	79	12	15.2	40	0	0	264	0	0	574	28	4.9	372	1	0.3	0.97621559	FALSE	FALSE	7.594031116	4.32434803	6	2	1	2	0.405968884	0.67565197	6	3	2	2	0.594031116	0.32434803	1.457079157	1.457079157	1	0	NA	0	0.469716307	0.790726772	0.594031116	0.033288834	NA	0	NA	NA	1	1	9.17E-15	7.95E-19	1	0.845051978	YES	1_1	0_0	somatic	custom.pulldown.HiSeq
PD9852b	3	96707217	T	C	EPHA6	CCDS46876.1	r.?	-	-	intronic	43	0	0	34	10	29.4	15	0	0	108	0	0	341	59	17.3	230	6	2.6	0.029248379	TRUE	TRUE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	1.571767739	1.571767739	1	0	0	1	0.924883737	0.924883737	1	0.306070175	0.306070175	1	4	3	1	1	1.15E-15	4.08E-70	1	0.001161255	YES	1_1	0_1	somatic	custom.pulldown.HiSeq
PD9852b	21	24250717	A	C	-	-	-	-	-	-	55	0	0	68	26	38.2	47	13	27.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.559012765	5	2	3	2	2	0.440987235	1	3	NA	2	NA	0.559012765	NA	2.502492976	0.97791344	2.559012765	3.260824561	1.08694152	3	NA	NA	0	NA	NA	1	4	NA	1	1	5.33E-42	1	1.47E-19	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	24267647	C	T	-	-	-	-	-	-	60	0	0	56	7	12.5	45	3	6.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.860744679	5	4	4	0	1	0.139255321	1	4	NA	1	NA	0.860744679	NA	0.856595081	0.856595081	1	0.788719298	0.788719298	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.46E-08	1	0.001516071	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	24288719	C	A	-	-	-	-	-	-	42	0	0	34	6	17.6	28	0	0	1	0	0	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.70259481	0.70259481	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	1.86E-08	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	24289841	G	T	-	-	-	-	-	-	53	0	0	63	6	9.5	37	4	10.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.860744679	5	4	4	0	1	0.139255321	1	4	NA	1	NA	0.860744679	NA	0.651012261	0.651012261	1	1.271368421	1.271368421	1	NA	NA	0	NA	NA	1	4	NA	1	1	0.000000832	1	0.0000362	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	24324646	G	C	NPY	CCDS5387.1	r.241g>c	c.?	p.?	5'UTR variant	17	0	0	65	6	9.2	17	0	0	1	0	0	1	0	0	0	0	NA	1	FALSE	FALSE	10.19837984	8.289880778	8	6	2	2	0.801620163	0.710119222	8	6	3	3	0.198379837	0.289880778	1.121516414	1.121516414	1	0	NA	0	0	NA	0	NA	NA	0	NA	NA	1	1	0.000001	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	24398096	T	A	-	-	-	-	-	-	39	0	0	34	13	38.2	25	3	12	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.5249501	1.5249501	1	1.052631579	1.052631579	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.03E-21	1	0.00026475	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	24404504	A	C	-	-	-	-	-	-	53	0	0	71	10	14.1	49	1	2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.860744679	5	4	4	0	1	0.139255321	1	4	NA	1	NA	0.860744679	NA	0.966239251	0.966239251	1	0.235438596	0.235438596	1	NA	NA	0	NA	NA	1	4	NA	1	1	3.42E-12	1	0.217776325	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	97287167	C	A	EPHA6	CCDS46876.1	r.?	-	-	intronic	45	0	0	45	6	13.3	36	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	0.711037787	0.711037787	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	0.000000108	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	24415713	A	C	-	-	-	-	-	-	50	0	0	106	11	10.4	48	1	2.1	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	10.19837984	8.289880778	8	6	2	2	0.801620163	0.710119222	8	6	3	3	0.198379837	0.289880778	1.267801164	1.267801164	1	0.316298023	NA	0	NA	NA	0	NA	NA	0	NA	NA	1	1	8.78E-12	1	0.213845552	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	24440915	G	A	DHRS4	CCDS9605.1	r.?	-	-	downstream	43	0	0	33	12	36.4	29	4	13.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.453093812	1.453093812	1	1.210526316	1.210526316	1	NA	NA	1	NA	NA	1	4	NA	1	1	7.86E-20	1	0.0000134	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	21	24447632	A	G	-	-	-	-	-	-	44	0	0	49	8	16.3	39	6	15.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.559012765	5	2	3	2	2	0.440987235	1	3	NA	2	NA	0.559012765	NA	1.067817683	1.067817683	1	1.812877193	1.812877193	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.47E-10	1	4.43E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	24452971	T	A	-	-	-	-	-	-	61	0	0	92	4	4.3	46	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	10.19837984	8.289880778	8	6	2	2	0.801620163	0.710119222	8	6	3	3	0.198379837	0.289880778	0.52418702	0.52418702	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	0.001230545	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	24472980	C	A	-	-	-	-	-	-	48	0	0	96	11	11.5	43	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	10.19837984	8.289880778	8	6	2	2	0.801620163	0.710119222	8	6	3	3	0.198379837	0.289880778	1.401895518	1.401895518	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	2.92E-12	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	22	24478140	T	A	CABIN1	CCDS13823.1	r.?	-	-	intronic	28	0	0	32	14	43.8	27	9	33.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.292921926	5	3	4	0	1	0.707078074	1	3	NA	1	NA	0.292921926	NA	2.314802797	0.855092736	2.707078074	3.920052632	0.980013158	4	NA	NA	0	NA	NA	1	4	NA	1	1	2.65E-24	1	8.44E-15	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	22	24478149	C	A	CABIN1	CCDS13823.1	r.?	-	-	intronic	32	0	0	29	13	44.8	25	8	32	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.292921926	5	3	4	0	1	0.707078074	1	3	NA	1	NA	0.292921926	NA	2.367652176	0.874615401	2.707078074	3.767017544	0.941754386	4	NA	NA	0	NA	NA	1	4	NA	1	1	7.69E-23	1	3.92E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	24479424	T	A	PDK3	CCDS48088.1	r.?	-	-	upstream	48	0	0	72	5	6.9	37	8	21.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7.594031116	4.32434803	6	2	1	2	0.405968884	0.67565197	6	3	2	2	0.594031116	0.32434803	0.661437249	0.661437249	1	2.396796017	1.031169165	2.32434803	NA	NA	0	NA	NA	0	4	NA	1	1	0.0000331	1	1.33E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	24484890	G	T	-	-	-	-	-	-	62	0	0	43	13	30.2	39	3	7.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.507588822	1.507588822	1	0.752438596	0.752438596	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.88E-20	1	0.000998458	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	21	24497953	T	A	-	-	-	-	-	-	48	0	0	45	4	8.9	56	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.559012765	5	2	3	2	2	0.440987235	1	3	NA	2	NA	0.559012765	NA	0.583041557	0.583041557	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	0.0000791	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	97828285	C	A	OR5AC2	ENST00000394195	r.?	-	-	downstream	33	0	0	38	8	21.1	31	5	16.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	1.128037391	1.128037391	1	1.895280702	1.895280702	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.67E-11	1	0.000000476	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	24600985	A	T	-	-	-	-	-	-	50	0	0	62	5	8.1	36	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.860744679	5	4	4	0	1	0.139255321	1	4	NA	1	NA	0.860744679	NA	0.555073612	0.555073612	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	0.000016	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	24611540	T	A	KIAA1217	CCDS31165.1	r.?	-	-	intronic	60	0	0	25	12	48	33	7	21.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.916167665	0.958083832	2	1.859649123	1.859649123	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.20E-21	1	2.98E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	105555894	G	A	CBLB	CCDS2948.1	r.?	-	-	intronic	46	0	0	55	9	16.4	39	8	20.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	0.876768399	0.876768399	1	2.413245614	0.804415205	3	NA	NA	0	NA	NA	1	4	NA	1	1	1.01E-11	1	2.09E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	24719331	A	C	-	-	-	-	-	-	45	0	0	26	5	19.2	26	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.766467066	0.766467066	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.000000188	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	24723785	T	C	CHST9	CCDS42422.1	r.?	-	-	intronic	41	0	0	18	5	27.8	17	1	5.9	0	0	NA	0	0	NA	1	0	0	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.109780439	1.109780439	1	0.51754386	0.51754386	1	NA	NA	1	0	0	1	4	NA	1	1	2.54E-08	1	0.081683532	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	24767605	A	G	-	-	-	-	-	-	41	0	0	46	24	52.2	38	12	31.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.860744679	5	4	4	0	1	0.139255321	1	4	NA	1	NA	0.860744679	NA	3.577141058	0.894285264	4	3.719929825	0.929982456	4	NA	NA	0	NA	NA	1	4	NA	1	1	4.23E-43	1	5.86E-19	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	24806051	C	G	-	-	-	-	-	-	48	0	0	36	4	11.1	33	2	6.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.37044448	5	2	3	1	2	0.62955552	1	2	NA	2	NA	0.37044448	NA	0.59523311	0.59523311	1	0.718087719	0.718087719	1	NA	NA	0	NA	NA	1	4	NA	1	1	0.0000324	1	0.011909843	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	21	24835905	G	T	-	-	-	-	-	-	52	0	0	47	15	31.9	50	5	10	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.559012765	5	2	3	2	2	0.440987235	1	3	NA	2	NA	0.559012765	NA	2.089778166	1.044889083	2	1.177192982	1.177192982	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.97E-23	1	0.00000549	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	108395917	G	A	DZIP3	CCDS2952.1	r.?	-	-	intronic	59	0	0	34	13	38.2	36	11	30.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	2.042228831	1.021114415	2	3.602210526	1.200736842	3	NA	NA	0	NA	NA	1	4	NA	1	1	1.03E-21	1	2.62E-17	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	21	24890600	C	A	-	-	-	-	-	-	52	0	0	62	6	9.7	55	1	1.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.559012765	5	2	3	2	2	0.440987235	1	3	NA	2	NA	0.559012765	NA	0.635449787	0.635449787	1	0.211894737	0.211894737	1	NA	NA	0	NA	NA	1	4	NA	1	1	0.000000756	1	0.240951649	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	24900927	T	C	CCDC149	ENST00000504487	r.?	-	-	intronic	51	0	0	29	4	13.8	32	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.661749236	3	2	2	0	1	0.338250764	1	2	NA	1	NA	0.661749236	NA	0.642219598	0.642219598	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	0.0000134	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	109606071	T	A	-	-	-	-	-	-	49	0	0	48	12	25	33	8	24.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	1.336537193	1.336537193	1	2.848807018	0.949602339	3	NA	NA	0	NA	NA	1	4	NA	1	1	1.44E-17	1	4.85E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	24926863	G	A	LUZP2	CCDS31446.1	r.?	-	-	intronic	46	0	0	40	7	17.5	26	3	11.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.873602794	0.873602794	1	1.12377193	1.12377193	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.26E-09	1	0.000298167	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	110427962	C	T	-	-	-	-	-	-	50	0	0	28	10	35.7	36	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	1.908575111	0.954287556	2	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	1.18E-16	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	21	24945895	C	T	-	-	-	-	-	-	66	0	0	54	8	14.8	45	6	13.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.559012765	5	2	3	2	2	0.440987235	1	3	NA	2	NA	0.559012765	NA	0.969552252	0.969552252	1	1.565666667	1.565666667	1	NA	NA	0	NA	NA	1	4	NA	1	1	3.31E-10	1	0.000000108	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	22	24949289	C	T	C22orf13	CCDS33621.1	r.?	-	-	intronic	45	0	0	24	9	37.5	25	8	32	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.292921926	5	3	4	0	1	0.707078074	1	3	NA	1	NA	0.292921926	NA	1.98185171	0.990925855	2	3.767017544	0.941754386	4	NA	NA	0	NA	NA	1	4	NA	1	1	2.39E-15	1	3.92E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	24987978	T	C	-	-	-	-	-	-	48	0	0	46	14	30.4	33	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.37044448	5	2	3	1	2	0.62955552	1	2	NA	2	NA	0.37044448	NA	1.630187976	1.000388116	1.62955552	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	1.26E-21	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	118520910	C	A	-	-	-	-	-	-	30	0	0	37	4	10.8	32	6	18.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	0.577384067	0.577384067	1	2.213122807	1.106561404	2	NA	NA	0	NA	NA	1	4	NA	1	1	0.0000362	1	1.27E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	25002342	A	C	ARHGAP17	CCDS32409.1	r.?	-	-	intronic	49	0	0	41	11	26.8	28	9	32.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.499724906	5.626372055	2	3	2	2	0.500275094	0.373627945	3	3	2	3	0.499724906	0.626372055	1.739786554	0.869893277	2	3.979854903	1.326618301	3	NA	NA	0	NA	NA	1	4	NA	1	1	1.34E-16	1	1.24E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	127728151	C	A	-	-	-	-	-	-	53	0	0	50	18	36	36	6	16.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.437125749	1.437125749	1	1.464912281	1.464912281	1	NA	NA	1	NA	NA	1	4	NA	1	1	5.92E-29	1	2.68E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	25080609	T	C	LUZP2	CCDS31446.1	r.?	-	-	intronic	55	0	0	50	10	20	35	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.998403194	0.998403194	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	8.36E-14	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	25091661	C	T	-	-	-	-	-	-	42	0	0	91	6	6.6	51	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	10.19837984	8.289880778	8	6	2	2	0.801620163	0.710119222	8	6	3	3	0.198379837	0.289880778	0.804566123	0.804566123	1	0	NA	0	NA	NA	0	NA	NA	0	NA	NA	1	1	0.00000724	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	25117356	C	A	-	-	-	-	-	-	39	0	0	78	8	10.3	34	2	5.9	0	0	NA	2	0	0	0	0	NA	1	TRUE	FALSE	7.594031116	4.32434803	6	2	1	2	0.405968884	0.67565197	6	3	2	2	0.594031116	0.32434803	0.98736285	0.98736285	1	0.654680393	0.654680393	1	0	NA	0	NA	NA	0	4	NA	1	1	6.71E-09	1	0.012612579	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	25119717	C	T	AC106810.1	ENST00000515097	r.?	-	-	intronic	10	0	0	21	7	33.3	17	4	23.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.329341317	1.329341317	1	2.061403509	2.061403509	1	NA	NA	1	NA	NA	1	4	NA	1	1	8.54E-12	1	0.00000141	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	21	25132198	C	T	-	-	-	-	-	-	48	0	0	51	22	43.1	33	8	24.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.559012765	5	2	3	2	2	0.440987235	1	3	NA	2	NA	0.559012765	NA	2.823493384	1.103352599	2.559012765	2.848807018	0.949602339	3	NA	NA	0	NA	NA	1	4	NA	1	1	3.24E-37	1	4.85E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	25157058	G	C	CYCS	CCDS5393.1	r.?	-	-	downstream	39	0	0	78	13	16.7	45	7	15.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	10.19837984	8.289880778	8	6	2	2	0.801620163	0.710119222	8	6	3	3	0.198379837	0.289880778	2.035796099	1.01789805	2	2.349642454	0.866988594	2.710119222	NA	NA	1	NA	NA	0	4	NA	1	1	1.99E-16	1	0.000000003	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	25202953	C	G	-	-	-	-	-	-	50	0	0	67	5	7.5	48	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	7.594031116	4.32434803	6	2	1	2	0.405968884	0.67565197	6	3	2	2	0.594031116	0.32434803	0.718953531	0.718953531	1	0	NA	0	NA	NA	0	NA	NA	0	NA	NA	1	1	0.0000233	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	25214434	C	G	-	-	-	-	-	-	56	0	0	73	5	6.8	34	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	7.594031116	4.32434803	6	2	1	2	0.405968884	0.67565197	6	3	2	2	0.594031116	0.32434803	0.651851202	0.651851202	1	0	NA	0	NA	NA	0	NA	NA	0	NA	NA	1	1	0.0000354	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	119391107	T	C	COX17	CCDS2993.1	r.?	-	-	intronic	42	0	0	33	13	39.4	30	1	3.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	2.106382616	1.053191308	2	0.388473684	0.388473684	1	NA	NA	0	NA	NA	1	4	NA	1	1	6.37E-22	1	0.139615808	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	25260742	A	C	-	-	-	-	-	-	52	0	0	43	14	32.6	34	9	26.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.293868134	5.486552635	2	3	2	2	0.706131866	0.513447365	3	3	2	3	0.293868134	0.486552635	2.049198217	1.024599109	2	3.248497852	1.082832617	3	NA	NA	0	NA	NA	1	4	NA	1	1	4.18E-22	1	9.15E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	25272387	A	T	ZKSCAN2	CCDS32410.1	r.?	-	-	upstream	36	0	0	55	12	21.8	40	4	10	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.499724906	5.626372055	2	3	2	2	0.500275094	0.373627945	3	3	2	3	0.499724906	0.626372055	1.415199511	1.415199511	1	1.239830188	1.239830188	1	NA	NA	0	NA	NA	0	4	NA	1	1	8.78E-17	1	0.0000495	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	25319704	T	C	-	-	-	-	-	-	22	0	0	15	6	40	11	2	18.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.596806387	1.596806387	1	1.596491228	1.596491228	1	NA	NA	1	NA	NA	1	4	NA	1	1	7.52E-11	1	0.001334363	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	25328983	C	G	-	-	-	-	-	-	53	0	0	35	8	22.9	30	4	13.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.914171657	0.914171657	1	1.166666667	1.166666667	1	NA	NA	1	NA	NA	1	4	NA	1	1	8.15E-12	1	0.0000154	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	25329783	G	C	LRRC16A	ENST00000329474	r.?	-	-	intronic	50	0	0	54	9	16.7	51	6	11.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.293868134	5.486552635	2	3	2	2	0.706131866	0.513447365	3	3	2	3	0.293868134	0.486552635	1.049742645	1.049742645	1	1.44650093	1.44650093	1	NA	NA	0	NA	NA	1	4	NA	1	1	8.48E-12	1	0.000000232	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	126915038	G	A	C3orf56	ENST00000398112	r.?	-	-	intronic	21	0	0	42	7	16.7	35	1	2.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.351371459	5	2	3	1	2	0.648628541	1	2	NA	2	NA	0.351371459	NA	0.8923457	0.8923457	1	0.341385965	0.341385965	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.81E-09	1	0.16091139	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	21	25337580	T	A	-	-	-	-	-	-	37	0	0	53	8	15.1	34	1	2.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.559012765	5	2	3	2	2	0.440987235	1	3	NA	2	NA	0.559012765	NA	0.989205339	0.989205339	1	0.341385965	0.341385965	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.83E-10	1	0.156694864	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	21	25337585	C	G	-	-	-	-	-	-	36	0	0	50	9	18	30	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.559012765	5	2	3	2	2	0.440987235	1	3	NA	2	NA	0.559012765	NA	1.179185172	1.179185172	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	4.07E-12	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	25370874	T	C	STXBP6	CCDS9634.1	r.?	-	-	intronic	46	0	0	42	18	42.9	29	7	24.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.71257485	0.856287425	2	2.114035088	1.057017544	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.20E-30	1	1.11E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	25410806	G	A	LRRC16A	ENST00000329474	r.?	-	-	intronic	51	0	0	42	11	26.2	27	0	0	186	0	0	167	20	12	195	6	3.1	0.014317176	TRUE	TRUE	4.293868134	5.486552635	2	3	2	2	0.706131866	0.513447365	3	3	2	3	0.293868134	0.486552635	1.646901635	1.646901635	1	0	0	1	0.754306092	0.754306092	1	0.380012956	0.781031544	0.486552635	4	3	1	1	1.81E-16	1.69E-21	1	0.000493817	YES	1_1	0_1	somatic	custom.pulldown.HiSeq
PD9852b	3	132020892	C	T	-	-	-	-	-	-	56	0	0	47	11	23.4	45	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.351371459	5	2	3	1	2	0.648628541	1	2	NA	2	NA	0.351371459	NA	1.250352658	1.250352658	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	7.21E-16	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	25426518	T	C	-	-	-	-	-	-	48	0	0	28	16	57.1	32	8	25	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.279441118	1.139720559	2	2.192982456	1.096491228	2	NA	NA	1	NA	NA	1	4	NA	1	1	4.39E-30	1	3.69E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	25488772	C	A	-	-	-	-	-	-	55	0	0	32	26	81.2	24	8	33.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	3.241516966	1.620758483	2	2.921052632	1.460526316	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.31E-54	1	2.68E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	25517898	G	A	RARB	CCDS2642.1	r.?	-	-	intronic	43	0	0	33	6	18.2	26	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.37044448	5	2	3	1	2	0.62955552	1	2	NA	2	NA	0.37044448	NA	0.975967802	0.975967802	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	1.54E-08	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	25553148	C	T	-	-	-	-	-	-	34	0	0	46	16	34.8	48	6	12.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.499724906	5.626372055	2	3	2	2	0.500275094	0.373627945	3	3	2	3	0.499724906	0.626372055	2.259125824	0.903749776	2.499724906	1.549787735	1.549787735	1	NA	NA	0	NA	NA	0	4	NA	1	1	1.31E-25	1	0.00000016	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	25592330	G	T	-	-	-	-	-	-	21	0	0	33	18	54.5	10	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.175648703	1.087824351	2	0	0	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.68E-33	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	137186174	C	A	-	-	-	-	-	-	50	0	0	37	5	13.5	37	4	10.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.351371459	5	2	3	1	2	0.648628541	1	2	NA	2	NA	0.351371459	NA	0.721357303	0.721357303	1	1.271368421	1.271368421	1	NA	NA	0	NA	NA	1	4	NA	1	1	0.00000119	1	0.0000362	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	25598507	C	T	-	-	-	-	-	-	64	0	0	50	17	34	43	12	27.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.499724906	5.626372055	2	3	2	2	0.500275094	0.373627945	3	3	2	3	0.499724906	0.626372055	2.207191897	1.103595949	2	3.459126224	1.153042075	3	NA	NA	0	NA	NA	0	4	NA	1	1	6.43E-27	1	3.24E-18	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	25653512	C	A	IFLTD1	CCDS44849.1	r.?	-	-	intronic	49	0	0	37	12	32.4	41	7	17.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.617413174	0.808706587	2	1.671	1.671	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.03E-19	1	1.51E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	25656293	C	T	UBE3A	CCDS45191.1	r.?	-	-	intronic	49	0	0	34	17	50	36	7	19.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3.455620428	2	2	1	1	1	0.544379572	NA	3	NA	1	NA	0.455620428	2.496007984	1.248003992	2	1.984144749	0.992072375	2	NA	NA	0	NA	NA	0	4	NA	1	1	1.64E-30	1	5.74E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	25724402	A	G	GPR158	CCDS31166.1	r.?	-	-	intronic	40	0	0	32	4	12.5	21	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.499001996	0.499001996	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.0000201	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	25761619	C	T	-	-	-	-	-	-	37	0	0	45	8	17.8	27	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3.455620428	2	2	1	1	1	0.544379572	NA	3	NA	1	NA	0.455620428	0.888578842	0.888578842	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	7.14E-11	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	21	25777720	G	C	-	-	-	-	-	-	67	0	0	54	7	13	28	1	3.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.559012765	5	2	3	2	2	0.440987235	1	3	NA	2	NA	0.559012765	NA	0.851633735	0.851633735	1	0.423789474	0.423789474	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.13E-08	1	0.130947004	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	25781485	A	G	-	-	-	-	-	-	38	0	0	55	5	9.1	33	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	7.594031116	4.32434803	6	2	1	2	0.405968884	0.67565197	6	3	2	2	0.594031116	0.32434803	0.872330285	0.872330285	1	0	NA	0	NA	NA	0	NA	NA	0	NA	NA	1	1	0.00000883	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	25802328	T	A	-	-	-	-	-	-	51	0	0	76	7	9.2	38	0	0	48	0	0	306	27	8.8	170	0	0	1	FALSE	FALSE	7.594031116	4.32434803	6	2	1	2	0.405968884	0.67565197	6	3	2	2	0.594031116	0.32434803	0.881916332	0.881916332	1	0	NA	0	0.843572143	0.843572143	1	0	NA	0	NA	NA	1	1	0.000000126	7.10E-25	1	1	YES	1_1	0_0	somatic	custom.pulldown.HiSeq
PD9852b	11	25815535	C	T	-	-	-	-	-	-	21	0	0	41	10	24.4	27	2	7.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.218051896	1.218051896	1	0.723122807	0.723122807	1	NA	NA	1	NA	NA	1	4	NA	1	1	9.51E-15	1	0.00807567	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	137646145	C	T	-	-	-	-	-	-	55	0	0	55	8	14.5	39	4	10.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.351371459	5	2	3	1	2	0.648628541	1	2	NA	2	NA	0.351371459	NA	0.774791177	0.774791177	1	1.212508772	1.212508772	1	NA	NA	0	NA	NA	1	4	NA	1	1	3.86E-10	1	0.0000447	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	25898633	A	C	EBF2	CCDS43726.1	r.?	-	-	intronic	25	0	0	21	6	28.6	18	2	11.1	274	0	0	46	11	23.9	52	3	5.8	0.015352626	TRUE	TRUE	1	2.620991218	1	2	0	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0.855716567	0.855716567	1	1.042614236	1.042614236	1	0.715091816	0.715091816	1	0.54478942	0.54478942	1	4	3	1	1	7.95E-10	5.55E-16	0.003626632	0.002300591	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	21	25942893	T	C	-	-	-	-	-	-	55	0	0	55	7	12.7	53	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.559012765	5	2	3	2	2	0.440987235	1	3	NA	2	NA	0.559012765	NA	0.831980649	0.831980649	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	1.28E-08	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	26031768	G	T	MAN1C1	CCDS265.1	r.?	-	-	intronic	46	0	0	33	10	30.3	41	14	34.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.512580838	1.512580838	1	4.01422807	1.338076023	3	NA	NA	0	NA	NA	1	4	NA	1	1	8.14E-16	1	1.90E-22	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	26036985	G	T	-	-	-	-	-	-	61	0	0	26	16	61.5	34	7	20.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.45508982	1.22754491	2	1.807017544	1.807017544	1	NA	NA	1	NA	NA	1	4	NA	1	1	7.73E-31	1	3.73E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	17	26051370	C	A	-	-	-	-	-	-	40	0	0	27	15	55.6	22	3	13.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	3.601202326	2	3	0	0	1	0.398797674	NA	3	NA	1	NA	0.601202326	2.219560878	1.109780439	2	1.410745973	1.410745973	1	NA	NA	0	NA	NA	0	4	NA	1	1	5.01E-28	1	0.000179267	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	26058292	A	G	FAM182A	ENST00000376398	r.?	-	-	intronic	98	0	0	62	14	22.6	54	6	11.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	4.362325493	2	2	1	2	1	0.637674507	NA	3	NA	2	NA	0.362325493	1.128195609	1.128195609	1	1.23590234	1.23590234	1	NA	NA	0	NA	NA	0	4	NA	1	1	1.42E-19	1	0.000000329	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	26064992	G	T	ENSG00000228451	ENST00000434116	r.?	-	-	intronic	25	0	0	27	6	22.2	22	4	18.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1	2.620991218	1	2	0	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0.664227545	0.664227545	1	1.70951163	1.70951163	1	NA	NA	0	NA	NA	0	4	NA	1	1	4.23E-09	1	0.00000425	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	26086106	G	A	-	-	-	-	-	-	42	0	0	35	10	28.6	23	2	8.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.141716567	1.141716567	1	0.763157895	0.763157895	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.60E-15	1	0.00589844	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	142367011	T	C	PLS1	CCDS3125.1	r.?	-	-	intronic	39	0	0	62	14	22.6	30	4	13.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.351371459	5	2	3	1	2	0.648628541	1	2	NA	2	NA	0.351371459	NA	1.207605558	1.207605558	1	1.565666667	1.565666667	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.42E-19	1	0.0000154	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	147326146	G	A	-	-	-	-	-	-	43	0	0	57	13	22.8	45	3	6.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.342151959	5	3	3	1	2	0.657848041	1	4	NA	1	NA	0.342151959	NA	1.444190287	1.444190287	1	0.788719298	0.788719298	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.44E-18	1	0.001516071	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	21	26211351	G	C	-	-	-	-	-	-	43	0	0	44	17	38.6	36	14	38.9	0	0	NA	1	0	0	0	0	NA	1	TRUE	FALSE	4.559012765	5	2	3	2	2	0.440987235	1	3	NA	2	NA	0.559012765	NA	2.528697091	0.988153371	2.559012765	4.579280702	1.526426901	3	0	NA	0	NA	NA	1	4	NA	1	1	4.61E-28	1	2.09E-23	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	26212102	G	A	MAGEB6	CCDS14217.1	r.288g>a	c.139G>A	p.A47T	missense	30	0	0	60	8	13.3	39	3	7.7	290	0	0	215	22	10.2	162	25	15.4	4.21E-22	TRUE	TRUE	7.594031116	4.32434803	6	2	1	2	0.405968884	0.67565197	6	3	2	2	0.594031116	0.32434803	1.274944262	1.274944262	1	0.854413395	0.854413395	1	0.977776803	0.977776803	1	1.70882679	0.854413395	2	4	3	1	1	7.93E-10	5.70E-22	0.000998458	2.44E-29	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	14	26216437	T	C	-	-	-	-	-	-	53	0	0	38	19	50	39	10	25.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.996007984	0.998003992	2	2.245614035	1.122807018	2	NA	NA	1	NA	NA	1	4	NA	1	1	6.16E-34	1	5.44E-15	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	22	26263372	T	A	MYO18B	ENST00000335473	r.?	-	-	intronic	38	0	0	28	13	46.4	28	10	35.7	2	0	0	0	0	NA	0	0	NA	1	TRUE	FALSE	3.292921926	5	3	4	0	1	0.707078074	1	3	NA	1	NA	0.292921926	NA	2.452211183	0.905851666	2.707078074	4.202578947	1.050644737	4	NA	NA	0	NA	NA	1	4	NA	1	1	4.26E-23	1	1.18E-16	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	26308642	C	T	-	-	-	-	-	-	48	0	0	26	9	34.6	31	2	6.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1	1	1	1	0	0	1	1	NA	NA	NA	NA	NA	NA	1.035237525	1.035237525	1	0.505175439	0.505175439	1	NA	NA	1	NA	NA	1	4	NA	1	1	5.65E-15	1	0.010558179	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	26313150	A	C	-	-	-	-	-	-	60	0	0	40	7	17.5	38	4	10.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.37044448	5	2	3	1	2	0.62955552	1	2	NA	2	NA	0.37044448	NA	0.938430578	0.938430578	1	1.236052632	1.236052632	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.26E-09	1	0.0000403	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	26320214	C	T	-	-	-	-	-	-	59	0	0	60	33	55	29	5	17.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7.594031116	4.32434803	6	2	1	2	0.405968884	0.67565197	6	3	2	2	0.594031116	0.32434803	5.272325896	0.975278624	5.405968884	1.908559791	1.908559791	1	NA	NA	0	NA	NA	0	4	NA	1	1	8.98E-60	1	0.000000336	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	153382533	G	T	-	-	-	-	-	-	43	0	0	56	19	33.9	31	7	22.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.339473093	5	2	3	1	2	0.660526907	1	2	NA	2	NA	0.339473093	NA	1.807374792	1.088434511	1.660526907	2.66045614	0.886818713	3	NA	NA	0	NA	NA	1	4	NA	1	1	6.79E-30	1	1.85E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	21	26335254	C	A	-	-	-	-	-	-	53	0	0	64	5	7.8	62	1	1.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.559012765	5	2	3	2	2	0.440987235	1	3	NA	2	NA	0.559012765	NA	0.510980241	0.510980241	1	0.188350877	0.188350877	1	NA	NA	0	NA	NA	1	4	NA	1	1	0.0000186	1	0.267123145	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	26384826	G	T	SSPN	CCDS8707.1	r.1649g>u	c.?	p.?	3'UTR variant	42	0	0	59	11	18.6	35	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.92851497	0.92851497	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	1.10E-14	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	26441403	T	A	-	-	-	-	-	-	47	0	0	36	14	38.9	28	2	7.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.552894212	0.776447106	2	0.622807018	0.622807018	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.09E-23	1	0.008668191	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	26466112	A	T	-	-	-	-	-	-	53	0	0	44	8	18.2	24	1	4.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3.455620428	2	2	1	1	1	0.544379572	NA	3	NA	1	NA	0.455620428	0.908546906	0.908546906	1	0.429557111	0.429557111	1	NA	NA	1	NA	NA	0	4	NA	1	1	5.90E-11	1	0.113346489	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	26476507	G	C	-	-	-	-	-	-	45	0	0	45	17	37.8	32	7	21.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.886982036	0.943491018	2	2.578052632	0.859350877	3	NA	NA	0	NA	NA	1	4	NA	1	1	7.37E-28	1	2.36E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	26531642	T	G	ATP8A2	CCDS41873.1	r.?	-	-	intronic	65	0	0	38	11	28.9	41	7	17.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.153692615	1.153692615	1	1.5	1.5	1	NA	NA	1	NA	NA	1	4	NA	1	1	5.19E-17	1	1.51E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	26538679	T	C	ITPR2	CCDS41764.1	r.?	-	-	intronic	49	0	0	38	14	36.8	30	6	20	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.837061876	0.918530938	2	1.954385965	1.954385965	1	NA	NA	1	NA	NA	1	4	NA	1	1	5.28E-23	1	8.37E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	153433842	C	T	-	-	-	-	-	-	44	0	0	37	13	35.1	26	3	11.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.339473093	5	2	3	1	2	0.660526907	1	2	NA	2	NA	0.339473093	NA	1.87135266	0.93567633	2	1.35377193	1.35377193	1	NA	NA	0	NA	NA	1	4	NA	1	1	3.89E-21	1	0.000298167	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	26558252	G	C	-	-	-	-	-	-	49	0	0	40	4	10	33	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.399201597	0.399201597	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.0000495	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	26577054	C	A	-	-	-	-	-	-	54	0	0	55	7	12.7	35	1	2.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.37044448	5	2	3	1	2	0.62955552	1	2	NA	2	NA	0.37044448	NA	0.681032477	0.681032477	1	0.341385965	0.341385965	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.28E-08	1	0.16091139	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	26637542	T	C	ANO3	CCDS31447.1	r.?	-	-	intronic	48	0	0	36	18	50	30	7	23.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	2.496007984	1.248003992	2	2.276859649	1.138429825	2	NA	NA	1	NA	NA	1	4	NA	1	1	3.18E-32	1	1.44E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	26694365	G	T	-	-	-	-	-	-	49	0	0	32	9	28.1	24	5	20.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.121756487	1.121756487	1	1.824561404	1.824561404	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.94E-14	1	0.000000123	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	26697861	G	T	-	-	-	-	-	-	77	0	0	97	9	9.3	60	0	0	0	0	NA	2	0	0	0	0	NA	1	TRUE	FALSE	4.293868134	5.486552635	2	3	2	2	0.706131866	0.513447365	3	3	2	3	0.293868134	0.486552635	0.584587222	0.584587222	1	0	0	1	0	NA	0	NA	NA	0	3	NA	1	1	1.88E-09	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	26742613	T	A	OTOF	CCDS1725.1	r.?	-	-	intronic	33	0	0	53	10	18.9	34	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	4	4	0	0	1	1	NA	NA	NA	NA	NA	NA	1.132491018	1.132491018	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	1.57E-13	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	26747102	C	T	-	-	-	-	-	-	50	0	0	32	6	18.8	35	2	5.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.750499002	0.750499002	1	0.5	0.5	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.27E-08	1	0.013332991	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	26758463	C	G	ITPR2	CCDS41764.1	r.?	-	-	intronic	46	0	0	33	11	33.3	36	9	25	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.662341317	0.831170659	2	2.442982456	1.221491228	2	NA	NA	1	NA	NA	1	4	NA	1	1	8.54E-18	1	1.63E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	26798649	T	A	-	-	-	-	-	-	58	0	0	37	15	40.5	33	7	21.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	2.021766467	1.010883234	2	2.071649123	1.035824561	2	NA	NA	1	NA	NA	1	4	NA	1	1	2.58E-25	1	2.98E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	26818557	T	C	GABRB3	CCDS10019.1	r.?	-	-	intronic	51	0	0	41	18	43.9	38	11	28.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3.455620428	2	2	1	1	1	0.544379572	NA	3	NA	1	NA	0.455620428	2.19149501	1.095747505	2	2.955762023	1.203672192	2.455620428	NA	NA	0	NA	NA	0	4	NA	1	1	6.91E-31	1	5.19E-17	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	26819854	C	G	-	-	-	-	-	-	69	0	0	39	7	17.9	32	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.893570858	0.893570858	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	1.04E-09	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	26840234	G	C	GABRB3	CCDS10019.1	r.?	-	-	intronic	45	0	0	43	4	9.3	38	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3.455620428	2	2	1	1	1	0.544379572	NA	3	NA	1	NA	0.455620428	0.464257485	0.464257485	1	0	0	1	NA	NA	1	NA	NA	0	3	NA	1	1	0.000066	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	26852725	A	C	-	-	-	-	-	-	56	0	0	39	5	12.8	38	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.638978044	0.638978044	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.00000156	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	26855154	A	G	SKAP2	CCDS5400.1	r.?	-	-	intronic	60	0	0	104	18	17.3	56	7	12.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	10.19837984	8.289880778	8	6	2	2	0.801620163	0.710119222	8	6	3	3	0.198379837	0.289880778	2.108938474	1.054469237	2	1.882726325	1.882726325	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.68E-22	1	1.46E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	26869619	G	T	-	-	-	-	-	-	40	0	0	41	12	29.3	33	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	4	4	0	0	1	1	NA	NA	NA	NA	NA	NA	1.755660679	0.877830339	2	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	1.69E-18	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	26893464	C	T	ENSG00000214801	ENST00000383335	r.?	-	-	intronic	44	0	0	54	18	33.3	38	8	21.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.293868134	5.486552635	2	3	2	2	0.706131866	0.513447365	3	3	2	3	0.293868134	0.486552635	2.093199406	1.046599703	2	2.586539799	1.029080551	2.513447365	NA	NA	0	NA	NA	0	4	NA	1	1	3.12E-28	1	1.67E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	26898189	G	A	-	-	-	-	-	-	61	0	0	47	11	23.4	46	5	10.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.499724906	5.626372055	2	3	2	2	0.500275094	0.373627945	3	3	2	3	0.499724906	0.626372055	1.519067364	1.519067364	1	1.351414905	1.351414905	1	NA	NA	0	NA	NA	0	4	NA	1	1	7.21E-16	1	0.00000361	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	26941386	C	G	-	-	-	-	-	-	49	0	0	28	16	57.1	35	15	42.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.279441118	1.139720559	2	3.763157895	1.881578947	2	NA	NA	1	NA	NA	1	4	NA	1	1	4.39E-30	1	9.02E-26	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	17	26942674	C	T	KIAA0100	CCDS32595.1	r.6624+8g>a	c.6525+8G>A	p.?	splice region	44	0	0	29	15	51.7	23	4	17.4	239	0	0	140	51	36.4	87	15	17.2	1.34E-14	TRUE	TRUE	2	3.601202326	2	3	0	0	1	0.398797674	NA	3	NA	1	NA	0.601202326	2.063872255	1.031936128	2	1.804924994	1.804924994	1	1.453093812	0.726546906	2	1.78417873	0.892089365	2	4	3	1	1	2.22E-27	1.51E-79	0.00000513	5.73E-19	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	2	26944625	G	T	KCNK3	CCDS1727.1	r.?	-	-	intronic	22	0	0	46	13	28.3	23	2	8.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	4	4	0	0	1	1	NA	NA	NA	NA	NA	NA	1.695740519	0.847870259	2	0.937157895	0.937157895	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.07E-19	1	0.00589844	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	162022941	G	T	-	-	-	-	-	-	43	0	0	44	12	27.3	23	1	4.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.339473093	5	2	3	1	2	0.660526907	1	2	NA	2	NA	0.339473093	NA	1.455496514	1.455496514	1	0.506192982	0.506192982	1	NA	NA	0	NA	NA	1	4	NA	1	1	4.44E-18	1	0.108890944	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	162664221	C	T	-	-	-	-	-	-	56	0	0	35	6	17.1	30	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.339473093	5	2	3	1	2	0.660526907	1	2	NA	2	NA	0.339473093	NA	0.911684629	0.911684629	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	2.24E-08	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	26994286	G	A	-	-	-	-	-	-	51	0	0	64	45	70.3	44	7	15.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5.430558574	4.32434803	3	2	2	2	0.569441426	0.67565197	4	3	2	2	0.430558574	0.32434803	5.218069903	1.521055476	3.430558574	1.764308179	1.764308179	1	NA	NA	1	NA	NA	0	4	NA	1	1	2.26E-88	1	2.55E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	27024520	C	T	SKAP2	ENST00000432747	r.?	-	-	intronic	45	0	0	92	14	15.2	33	4	12.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	10.19837984	8.289880778	8	6	2	2	0.801620163	0.710119222	8	6	3	3	0.198379837	0.289880778	1.852940162	1.028485471	1.801620163	1.822479083	1.822479083	1	NA	NA	0	NA	NA	0	4	NA	1	1	5.34E-17	1	0.0000228	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	164292833	G	A	-	-	-	-	-	-	41	1	2.4	36	11	30.6	31	3	9.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.339473093	5	2	3	1	2	0.660526907	1	2	NA	2	NA	0.339473093	NA	1.631435653	1.631435653	1	1.141877193	1.141877193	1	NA	NA	0	NA	NA	1	4	NA	0.18577148	1	2.62E-17	1	0.000505952	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	27055388	C	T	-	-	-	-	-	-	56	0	0	30	13	43.3	33	15	45.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.728542914	0.864271457	2	3.99122807	1.995614035	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.35E-22	1	2.91E-26	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	27075390	G	A	-	-	-	-	-	-	36	0	0	55	10	18.2	39	1	2.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.293868134	5.486552635	2	3	2	2	0.706131866	0.513447365	3	3	2	3	0.293868134	0.486552635	1.144030907	1.144030907	1	0.318720544	0.318720544	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.33E-13	1	0.177567718	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	21	27081073	G	A	JAM2	CCDS42911.1	r.?	-	-	intronic	48	0	0	54	6	11.1	35	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.559012765	5	2	3	2	2	0.440987235	1	3	NA	2	NA	0.559012765	NA	0.727164189	0.727164189	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	0.000000329	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	27085786	G	A	-	-	-	-	-	-	57	0	0	37	16	43.2	35	10	28.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.724550898	0.862275449	2	2.50877193	1.254385965	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.78E-27	1	1.60E-15	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	27121904	G	T	GABRA5	CCDS45194.1	r.?	-	-	intronic	31	0	0	43	11	25.6	39	6	15.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3.455620428	2	2	1	1	1	0.544379572	NA	3	NA	1	NA	0.455620428	1.277956088	1.277956088	1	1.575042739	1.575042739	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.42E-16	1	4.43E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	27130267	G	C	-	-	-	-	-	-	42	0	0	18	7	38.9	16	1	6.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1	2.620991218	1	2	0	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.163894212	1.163894212	1	0.582361105	0.582361105	1	NA	NA	0	NA	NA	0	4	NA	1	1	2.37E-12	1	0.077068876	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	27142163	C	G	WASF3	CCDS9318.1	r.?	-	-	intronic	38	0	0	34	16	47.1	20	5	25	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.880239521	0.94011976	2	2.192982456	2.192982456	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.09E-28	1	4.55E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	21	27142815	T	C	GABPA	CCDS13575.1	r.3164u>c	c.?	p.?	3'UTR variant	50	0	0	58	30	51.7	46	13	28.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.559012765	5	2	3	2	2	0.440987235	1	3	NA	2	NA	0.559012765	NA	3.386881855	1.323511122	2.559012765	3.33145614	1.11048538	3	NA	NA	0	NA	NA	1	4	NA	1	1	2.36E-53	1	1.07E-19	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	27143874	G	A	TM7SF3	CCDS8710.1	r.?	-	-	intronic	29	0	0	43	10	23.3	21	3	14.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.163139721	1.163139721	1	1.397385965	1.397385965	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.61E-14	1	0.000155401	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	27170746	G	A	-	-	-	-	-	-	52	0	0	44	16	36.4	46	9	19.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.499724906	5.626372055	2	3	2	2	0.500275094	0.373627945	3	3	2	3	0.499724906	0.626372055	2.362993678	0.94530149	2.499724906	2.430067168	1.02377762	2.373627945	NA	NA	0	NA	NA	1	4	NA	1	1	5.57E-26	1	1.82E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	27220506	G	T	-	-	-	-	-	-	22	0	0	39	17	43.6	13	4	30.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.740518962	0.870259481	2	2.701754386	1.350877193	2	NA	NA	1	NA	NA	1	4	NA	1	1	3.51E-29	1	0.000000431	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	176574133	C	A	-	-	-	-	-	-	49	0	0	44	12	27.3	37	6	16.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.362820359	1.362820359	1	1.907052632	1.907052632	1	NA	NA	0	NA	NA	1	4	NA	1	1	4.44E-18	1	3.18E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	27251294	C	T	POM121L2	ENST00000429945	r.?	-	-	downstream	28	0	0	42	16	38.1	45	6	13.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.293868134	5.486552635	2	3	2	2	0.706131866	0.513447365	3	3	2	3	0.293868134	0.486552635	2.394921843	1.044053844	2.293868134	1.630378167	1.630378167	1	NA	NA	0	NA	NA	0	4	NA	1	1	2.25E-26	1	0.000000108	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	27278884	C	A	NEK10	CCDS46781.1	r.?	-	-	intronic	50	0	0	51	5	9.8	33	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.37044448	5	2	3	1	2	0.62955552	1	2	NA	2	NA	0.37044448	NA	0.525521124	0.525521124	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	0.00000606	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	27287503	G	A	NEK10	CCDS46781.1	r.?	-	-	intronic	53	0	0	41	10	24.4	28	6	21.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.37044448	5	2	3	1	2	0.62955552	1	2	NA	2	NA	0.37044448	NA	1.308440349	1.308440349	1	2.519192982	0.839730994	3	NA	NA	0	NA	NA	1	4	NA	1	1	9.51E-15	1	5.36E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	21	27290677	C	G	APP	CCDS33523.1	r.?	-	-	intronic	22	0	0	60	21	35	18	5	27.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.559012765	5	2	3	2	2	0.440987235	1	3	NA	2	NA	0.559012765	NA	2.292860057	0.89599399	2.559012765	3.272596491	1.090865497	3	NA	NA	0	NA	NA	1	4	NA	1	1	3.16E-33	1	2.54E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	27307208	C	T	-	-	-	-	-	-	55	0	0	29	11	37.9	33	6	18.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.661749236	3	2	2	0	1	0.338250764	1	2	NA	1	NA	0.661749236	NA	1.763777012	0.881888506	2	1.778491228	1.778491228	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.56E-18	1	1.54E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	27320685	T	A	-	-	-	-	-	-	35	0	0	49	11	22.4	29	1	3.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.293868134	5.486552635	2	3	2	2	0.706131866	0.513447365	3	3	2	3	0.293868134	0.486552635	1.408038039	1.408038039	1	0.416788404	0.416788404	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.19E-15	1	0.135292269	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	27327405	G	A	-	-	-	-	-	-	47	0	0	72	6	8.3	44	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	10.19837984	8.289880778	8	6	2	2	0.801620163	0.710119222	8	6	3	3	0.198379837	0.289880778	1.011802852	1.011802852	1	0	NA	0	NA	NA	0	NA	NA	0	NA	NA	1	1	0.00000184	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	27355483	G	T	IL4R	CCDS10629.1	r.?	-	-	intronic	26	0	0	33	7	21.2	26	3	11.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.499724906	5.626372055	2	3	2	2	0.500275094	0.373627945	3	3	2	3	0.499724906	0.626372055	1.376249065	1.376249065	1	1.425804716	1.425804716	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.98E-10	1	0.000298167	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	27408198	C	T	-	-	-	-	-	-	68	0	0	25	10	40	29	7	24.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.596806387	1.596806387	1	2.114035088	1.057017544	2	NA	NA	1	NA	NA	1	4	NA	1	1	2.98E-17	1	1.11E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	27420337	T	A	-	-	-	-	-	-	56	0	0	106	5	4.7	37	0	0	123	0	0	268	18	6.7	164	1	0.6	0.807614687	FALSE	FALSE	10.19837984	8.289880778	8	6	2	2	0.801620163	0.710119222	8	6	3	3	0.198379837	0.289880778	0.572948603	0.572948603	1	0	NA	0	0.816756519	0.816756519	1	0.090370864	NA	0	NA	NA	1	1	0.000208264	5.17E-15	1	0.56047332	YES	1_1	0_0	somatic	custom.pulldown.HiSeq
PD9852b	16	27433609	G	A	IL21R	CCDS10630.1	r.?	-	-	intronic	59	0	0	46	15	32.6	47	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.499724906	5.626372055	2	3	2	2	0.500275094	0.373627945	3	3	2	3	0.499724906	0.626372055	2.116307525	1.058153762	2	0	0	1	NA	NA	0	NA	NA	0	3	NA	1	1	1.35E-23	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	27448819	C	T	LGR4	CCDS31449.1	r.?	-	-	intronic	47	0	0	47	10	21.3	31	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.063299401	1.063299401	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	4.27E-14	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	27454693	C	T	-	-	-	-	-	-	47	0	0	21	5	23.8	29	2	6.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.9500998	0.9500998	1	0.605263158	0.605263158	1	NA	NA	1	NA	NA	1	4	NA	1	1	5.95E-08	1	0.009279585	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	180841592	G	T	-	-	-	-	-	-	52	0	0	54	8	14.8	33	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	0.738818363	0.738818363	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	3.31E-10	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	27499386	G	A	GABRG3	CCDS45195.1	r.?	-	-	intronic	20	0	0	39	5	12.8	27	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3.455620428	2	2	1	1	1	0.544379572	NA	3	NA	1	NA	0.455620428	0.638978044	0.638978044	1	0	0	1	NA	NA	1	NA	NA	0	3	NA	1	1	0.00000156	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	27509613	T	C	SLC4A7	ENST00000454389	r.?	-	-	intronic	44	0	0	36	12	33.3	29	3	10.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.37044448	5	2	3	1	2	0.62955552	1	2	NA	2	NA	0.37044448	NA	1.785699329	1.095819877	1.62955552	1.212508772	1.212508772	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.73E-19	1	0.000414371	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	27528635	G	T	ACBD5	CCDS44368.1	r.?	-	-	intronic	45	0	0	41	5	12.2	36	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.487025948	0.487025948	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.00000202	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	27530121	C	T	-	-	-	-	-	-	27	0	0	26	7	26.9	24	4	16.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.342852295	1.342852295	1	1.965912281	1.965912281	1	NA	NA	0	NA	NA	1	4	NA	1	1	4.73E-11	1	0.00000613	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	155926131	G	T	-	-	-	-	-	-	38	0	0	52	7	13.5	40	4	10	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.808922156	0.808922156	1	1.077192982	1.077192982	1	NA	NA	1	NA	NA	1	4	NA	1	1	8.58E-09	1	0.0000495	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	184650205	G	A	VPS8	CCDS46971.1	r.?	-	-	intronic	45	0	0	54	17	31.5	43	12	27.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.57248503	0.786242515	2	3.284368421	1.094789474	3	NA	NA	0	NA	NA	1	4	NA	1	1	3.02E-26	1	3.24E-18	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	187139565	A	G	AC068299.1	ENST00000459452	r.?	-	-	upstream	48	0	0	47	8	17	31	5	16.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	0.848642715	0.848642715	1	1.895280702	1.895280702	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.03E-10	1	0.000000476	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	27638682	C	T	-	-	-	-	-	-	36	0	0	21	4	19	31	3	9.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.758483034	0.758483034	1	0.850877193	0.850877193	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.00000349	1	0.000505952	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	190627105	C	A	-	-	-	-	-	-	62	0	0	49	14	28.6	31	7	22.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.427716567	1.427716567	1	2.66045614	0.886818713	3	NA	NA	0	NA	NA	1	4	NA	1	1	3.50E-21	1	1.85E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	27733142	C	T	-	-	-	-	-	-	34	0	0	99	7	7.1	42	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	10.19837984	8.289880778	8	6	2	2	0.801620163	0.710119222	8	6	3	3	0.198379837	0.289880778	0.865518102	0.865518102	1	0	NA	0	NA	NA	0	NA	NA	0	NA	NA	1	1	0.000000778	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	21	27733646	G	A	-	-	-	-	-	-	70	0	0	49	18	36.7	46	8	17.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.559012765	5	2	3	2	2	0.440987235	1	3	NA	2	NA	0.559012765	NA	2.404227545	0.939513698	2.559012765	2.048315789	1.024157895	2	NA	NA	0	NA	NA	1	4	NA	1	1	3.80E-29	1	8.61E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	27741306	T	A	-	-	-	-	-	-	36	0	0	81	12	14.8	32	0	0	0	0	NA	0	0	NA	2	0	0	1	FALSE	FALSE	10.19837984	8.289880778	8	6	2	2	0.801620163	0.710119222	8	6	3	3	0.198379837	0.289880778	1.804178579	1.001420064	1.801620163	0	NA	0	NA	NA	1	0	NA	0	NA	NA	1	1	1.26E-14	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	27755387	C	T	EOMES	CCDS2646.1	r.?	-	-	downstream	31	0	0	41	6	14.6	30	1	3.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.37044448	5	2	3	1	2	0.62955552	1	2	NA	2	NA	0.37044448	NA	0.782919225	0.782919225	1	0.388473684	0.388473684	1	NA	NA	0	NA	NA	1	4	NA	1	1	6.05E-08	1	0.139615808	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	27757151	C	T	-	-	-	-	-	-	47	0	0	58	9	15.5	38	5	13.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5.430558574	4.32434803	3	2	2	2	0.569441426	0.67565197	4	3	2	2	0.430558574	0.32434803	1.150499054	1.150499054	1	1.464708677	1.464708677	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.67E-11	1	0.00000137	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	27759070	T	A	-	-	-	-	-	-	32	0	0	100	8	8	33	1	3	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	10.19837984	8.289880778	8	6	2	2	0.801620163	0.710119222	8	6	3	3	0.198379837	0.289880778	0.975231664	0.975231664	1	0.451854318	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	4.83E-08	1	0.15245715	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	27765733	A	T	-	-	-	-	-	-	24	0	0	43	6	14	19	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	5.430558574	4.32434803	3	2	2	2	0.569441426	0.67565197	4	3	2	2	0.430558574	0.32434803	1.039160436	1.039160436	1	0	NA	0	NA	NA	0	NA	NA	0	NA	NA	1	1	8.13E-08	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	27766970	A	C	KIAA0556	CCDS32415.1	r.?	-	-	intronic	23	0	0	48	13	27.1	32	4	12.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.499724906	5.626372055	2	3	2	2	0.500275094	0.373627945	3	3	2	3	0.499724906	0.626372055	1.759261777	0.879630888	2	1.549787735	1.549787735	1	NA	NA	0	NA	NA	0	4	NA	1	1	2.00E-19	1	0.0000201	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	27772374	A	T	-	-	-	-	-	-	43	0	0	18	6	33.3	21	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1	1	1	1	0	0	1	1	NA	NA	NA	NA	NA	NA	0.996341317	0.996341317	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	2.75E-10	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	27816897	A	C	-	-	-	-	-	-	56	0	0	36	6	16.7	26	4	15.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.661749236	3	2	2	0	1	0.338250764	1	2	NA	1	NA	0.661749236	NA	0.777178789	0.777178789	1	1.504877193	1.504877193	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.68E-08	1	0.00000856	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	27859277	C	A	MRPS35	CCDS8714.1	r.?	-	-	upstream	37	0	0	51	10	19.6	35	3	8.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.97843513	0.97843513	1	0.840385965	0.840385965	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.04E-13	1	0.000725791	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	27890038	A	G	-	-	-	-	-	-	37	0	0	41	9	22	26	3	11.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.878243513	0.878243513	1	1.00877193	1.00877193	1	NA	NA	1	NA	NA	1	4	NA	1	1	5.92E-13	1	0.000298167	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	27901846	C	A	GSG1L	CCDS45450.1	r.?	-	-	intronic	29	0	0	51	7	13.7	38	5	13.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.499724906	5.626372055	2	3	2	2	0.500275094	0.373627945	3	3	2	3	0.499724906	0.626372055	0.8893685	0.8893685	1	1.636575848	1.636575848	1	NA	NA	0	NA	NA	0	4	NA	1	1	7.46E-09	1	0.00000137	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	21	27911200	C	G	CYYR1	CCDS13578.1	r.?	-	-	intronic	51	0	0	56	8	14.3	40	2	5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.559012765	5	2	3	2	2	0.440987235	1	3	NA	2	NA	0.559012765	NA	0.936797109	0.936797109	1	0.588596491	0.588596491	1	NA	NA	0	NA	NA	1	4	NA	1	1	4.48E-10	1	0.017193422	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	21	27914984	A	C	CYYR1	CCDS13578.1	r.?	-	-	intronic	54	0	0	42	10	23.8	35	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.559012765	5	2	3	2	2	0.440987235	1	3	NA	2	NA	0.559012765	NA	1.559144838	1.559144838	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	1.24E-14	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	21	27972311	C	T	-	-	-	-	-	-	45	0	0	31	9	29	29	6	20.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.559012765	5	2	3	2	2	0.440987235	1	3	NA	2	NA	0.559012765	NA	1.899798333	0.949899166	2	2.436789474	0.812263158	3	NA	NA	0	NA	NA	1	4	NA	1	1	3.57E-14	1	6.72E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	28007823	C	T	OCA2	CCDS10020.1	r.?	-	-	intronic	51	0	0	46	16	34.8	27	6	22.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3.455620428	2	2	1	1	1	0.544379572	NA	3	NA	1	NA	0.455620428	1.737221557	0.868610778	2	2.270516156	0.924620161	2.455620428	NA	NA	1	NA	NA	0	4	NA	1	1	1.31E-25	1	4.23E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	28084332	A	G	-	-	-	-	-	-	40	0	0	33	7	21.2	31	4	12.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.846307385	0.846307385	1	1.131578947	1.131578947	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.98E-10	1	0.0000177	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	28106793	G	T	-	-	-	-	-	-	41	0	0	57	9	15.8	39	2	5.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5	4.32434803	4	2	1	2	1	0.67565197	NA	3	NA	2	NA	0.32434803	1.104738523	1.104738523	1	0.565910171	0.565910171	1	NA	NA	0	NA	NA	0	4	NA	1	1	1.42E-11	1	0.016387522	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	28134703	C	T	STX12	CCDS310.1	r.?	-	-	intronic	39	0	0	36	8	22.2	45	8	17.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.108227545	1.108227545	1	2.095403509	1.047701754	2	NA	NA	0	NA	NA	1	4	NA	1	1	1.04E-11	1	7.14E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	28180214	G	A	LINGO2	CCDS6524.1	r.?	-	-	intronic	44	0	0	29	9	31	29	3	10.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1	1	1	1	0	0	1	1	NA	NA	NA	NA	NA	NA	0.92752495	0.92752495	1	0.800508772	0.800508772	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.79E-14	1	0.000414371	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	28183096	T	C	-	-	-	-	-	-	56	0	0	40	7	17.5	34	4	11.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.873602794	0.873602794	1	1.153087719	1.153087719	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.26E-09	1	0.0000257	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	28183866	G	A	-	-	-	-	-	-	38	0	0	36	12	33.3	25	3	12	2	0	0	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.662341317	0.831170659	2	1.172631579	1.172631579	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.73E-19	1	0.00026475	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	22	28185096	C	T	MN1	CCDS42998.1	r.?	-	-	intronic	43	0	0	37	21	56.8	17	4	23.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.292921926	5	3	4	0	1	0.707078074	1	3	NA	1	NA	0.292921926	NA	3.001844724	1.000614908	3	2.766403509	0.922134503	3	NA	NA	0	NA	NA	1	4	NA	1	1	5.69E-39	1	0.00000141	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	196236816	C	G	C3orf43	CCDS43192.1	r.?	-	-	intronic	49	0	0	49	9	18.4	33	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	0.918530938	0.918530938	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	3.35E-12	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	2259138	C	A	MXD4	CCDS3361.1	r.?	-	-	intronic	16	0	0	35	15	42.9	16	3	18.8	2	0	0	0	0	NA	0	0	NA	1	TRUE	FALSE	2.661749236	3	2	2	0	1	0.338250764	1	2	NA	1	NA	0.661749236	NA	1.996465272	0.998232636	2	1.837122807	1.837122807	1	NA	NA	0	NA	NA	1	4	NA	1	1	9.02E-26	1	0.0000667	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	28201790	A	G	-	-	-	-	-	-	61	0	0	41	7	17.1	35	2	5.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.661749236	3	2	2	0	1	0.338250764	1	2	NA	1	NA	0.661749236	NA	0.79579385	0.79579385	1	0.557	0.557	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.51E-09	1	0.013332991	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	17	28220781	A	C	SSH2	CCDS11253.1	r.?	-	-	intronic	56	0	0	30	10	33.3	42	14	33.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	3.601202326	2	3	0	0	1	0.398797674	NA	3	NA	1	NA	0.601202326	1.329341317	1.329341317	1	3.454253006	1.151417669	3	NA	NA	0	NA	NA	1	4	NA	1	1	2.68E-16	1	2.83E-22	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	28228980	A	C	NKAPL	CCDS34353.1	r.?	-	-	downstream	58	0	0	67	9	13.4	38	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.293868134	5.486552635	2	3	2	2	0.706131866	0.513447365	3	3	2	3	0.293868134	0.486552635	0.84230847	0.84230847	1	0	0	1	NA	NA	0	NA	NA	0	3	NA	1	1	6.43E-11	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	3240908	A	G	HTT	CCDS43206.1	r.?	-	-	intronic	11	0	0	38	6	15.8	10	1	10	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.661749236	3	2	2	0	1	0.338250764	1	2	NA	1	NA	0.661749236	NA	0.735294902	0.735294902	1	0.977192982	0.977192982	1	NA	NA	0	NA	NA	1	4	NA	1	1	3.76E-08	1	0.04888987	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	21	28323809	G	A	ADAMTS5	CCDS13579.1	r.?	-	-	intronic	46	0	0	44	8	18.2	26	6	23.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.559012765	5	2	3	2	2	0.440987235	1	3	NA	2	NA	0.559012765	NA	1.192287229	1.192287229	1	2.719315789	0.906438596	3	NA	NA	0	NA	NA	1	4	NA	1	1	5.90E-11	1	3.30E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	8482730	C	A	C4orf23	CCDS3402.1	r.?	-	-	downstream	46	0	0	40	19	47.5	24	8	33.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.661749236	3	2	2	0	1	0.338250764	1	2	NA	1	NA	0.661749236	NA	2.210538472	1.105269236	2	3.254052632	1.627026316	2	NA	NA	0	NA	NA	1	4	NA	1	1	2.27E-33	1	2.68E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	21	28331078	C	G	ADAMTS5	CCDS13579.1	r.?	-	-	intronic	62	0	0	66	32	48.5	52	13	25	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.559012765	5	2	3	2	2	0.440987235	1	3	NA	2	NA	0.559012765	NA	3.177248936	1.241591671	2.559012765	2.942982456	0.980994152	3	NA	NA	0	NA	NA	1	4	NA	1	1	1.38E-55	1	6.47E-19	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	28338404	A	G	ZKSCAN3	CCDS4650.1	r.?	-	-	downstream	56	0	0	60	25	41.7	39	5	12.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.293868134	5.486552635	2	3	2	2	0.706131866	0.513447365	3	3	2	3	0.293868134	0.486552635	2.621213671	1.142704601	2.293868134	1.569085755	1.569085755	1	NA	NA	0	NA	NA	0	4	NA	1	1	1.31E-41	1	0.00000156	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	10498286	G	T	CLNK	CCDS47024.1	r.?	-	-	intronic	51	0	0	36	14	38.9	27	9	33.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.661749236	3	2	2	0	1	0.338250764	1	2	NA	1	NA	0.661749236	NA	1.810314664	0.905157332	2	3.254052632	1.627026316	2	NA	NA	0	NA	NA	1	4	NA	1	1	2.09E-23	1	8.44E-15	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	28425405	G	T	-	-	-	-	-	-	44	0	0	37	7	18.9	35	4	11.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.661749236	3	2	2	0	1	0.338250764	1	2	NA	1	NA	0.661749236	NA	0.879561623	0.879561623	1	1.114	1.114	1	NA	NA	0	NA	NA	1	4	NA	1	1	7.05E-10	1	0.0000289	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	28426347	G	A	-	-	-	-	-	-	38	0	0	35	15	42.9	39	14	35.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.71257485	0.856287425	2	3.149122807	1.574561404	2	NA	NA	1	NA	NA	1	4	NA	1	1	9.02E-26	1	8.19E-23	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	28426839	C	T	-	-	-	-	-	-	66	0	0	62	13	21	38	6	15.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.048323353	1.048323353	1	1.543964912	1.543964912	1	NA	NA	1	NA	NA	1	4	NA	1	1	8.08E-18	1	3.76E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	28448657	C	T	CCDC91	CCDS8716.1	r.?	-	-	intronic	51	0	0	36	5	13.9	41	5	12.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.69389022	0.69389022	1	1.192175439	1.192175439	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.00000104	1	0.00000202	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	28450110	G	T	BRE	CCDS1764.1	r.?	-	-	intronic	48	0	0	51	11	21.6	43	7	16.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	4	4	0	0	1	1	NA	NA	NA	NA	NA	NA	1.294275449	1.294275449	1	1.755824561	1.755824561	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.94E-15	1	2.15E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	28466672	C	T	CCDC91	CCDS8716.1	r.?	-	-	intronic	52	0	0	50	17	34	37	7	18.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.697285429	0.848642715	2	1.846894737	1.846894737	1	NA	NA	1	NA	NA	1	4	NA	1	1	6.43E-27	1	7.05E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	28472376	G	A	-	-	-	-	-	-	41	0	0	37	10	27	37	5	13.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.7646161	5.384331439	2	3	2	2	0.2353839	0.615668561	3	4	2	2	0.7646161	0.384331439	1.824290658	1.033817304	1.7646161	1.641095271	1.641095271	1	NA	NA	0	NA	NA	1	4	NA	1	1	3.01E-15	1	0.00000119	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	28483968	C	A	-	-	-	-	-	-	22	0	0	30	8	26.7	18	1	5.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.065868263	1.065868263	1	0.49122807	0.49122807	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.07E-12	1	0.086275114	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	28493834	G	A	CREB5	CCDS5417.1	r.?	-	-	intronic	31	0	0	90	56	62.2	55	20	36.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	10.19837984	8.289880778	8	6	2	2	0.801620163	0.710119222	8	6	3	3	0.198379837	0.289880778	7.582426191	0.971904045	7.801620163	5.482499059	0.960137406	5.710119222	NA	NA	1	NA	NA	0	4	NA	1	1	8.31E-105	1	4.08E-32	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	28497551	G	A	CLN3	CCDS10632.1	r.?	-	-	intronic	21	0	0	47	14	29.8	17	4	23.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.499724906	5.626372055	2	3	2	2	0.500275094	0.373627945	3	3	2	3	0.499724906	0.626372055	1.93453878	0.96726939	2	2.913600942	0.971200314	3	NA	NA	0	NA	NA	1	4	NA	1	1	1.79E-21	1	0.00000141	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	28518176	G	A	PTAFR	CCDS318.1	r.?	-	-	intronic	40	0	0	41	17	41.5	35	8	22.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	2.071686627	1.035843313	2	2.69577193	0.898590643	3	NA	NA	0	NA	NA	1	4	NA	1	1	1.03E-28	1	8.15E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	28519753	G	A	ZCWPW2	CCDS33723.1	r.?	-	-	intronic	59	0	0	45	11	24.4	38	5	13.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.37044448	5	2	3	1	2	0.62955552	1	2	NA	2	NA	0.37044448	NA	1.308440349	1.308440349	1	1.553894737	1.553894737	1	NA	NA	0	NA	NA	1	4	NA	1	1	4.24E-16	1	0.00000137	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	17	28550545	C	T	SLC6A4	CCDS11256.1	r.?	-	-	intronic	55	0	0	40	24	60	32	10	31.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	3.601202326	2	3	0	0	1	0.398797674	NA	3	NA	1	NA	0.601202326	2.395209581	1.19760479	2	3.236417231	1.078805744	3	NA	NA	0	NA	NA	0	4	NA	1	1	3.47E-45	1	5.70E-16	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	13128601	T	C	-	-	-	-	-	-	55	0	0	35	5	14.3	29	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.661749236	3	2	2	0	1	0.338250764	1	2	NA	1	NA	0.661749236	NA	0.665488424	0.665488424	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	0.000000895	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	21	28651963	C	A	-	-	-	-	-	-	47	1	2.1	40	12	30	42	16	38.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.559012765	5	2	3	2	2	0.440987235	1	3	NA	2	NA	0.559012765	NA	1.96530862	0.98265431	2	4.485105263	1.495035088	3	NA	NA	0	NA	NA	1	4	NA	0.209895027	1	1.20E-18	1	2.25E-26	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	14690878	G	C	-	-	-	-	-	-	51	0	0	49	7	14.3	35	6	17.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.661749236	3	2	2	0	1	0.338250764	1	2	NA	1	NA	0.661749236	NA	0.665488424	0.665488424	1	1.671	1.671	1	NA	NA	0	NA	NA	1	4	NA	1	1	5.58E-09	1	2.24E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	21	28654643	C	A	-	-	-	-	-	-	50	0	0	66	21	31.8	37	4	10.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.559012765	5	2	3	2	2	0.440987235	1	3	NA	2	NA	0.559012765	NA	2.083227137	1.041613569	2	1.271368421	1.271368421	1	NA	NA	0	NA	NA	1	4	NA	1	1	3.42E-32	1	0.0000362	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	28673064	C	T	-	-	-	-	-	-	39	0	0	35	7	20	24	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.661749236	3	2	2	0	1	0.338250764	1	2	NA	1	NA	0.661749236	NA	0.930753041	0.930753041	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	4.65E-10	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	15672615	C	T	FBXL5	ENST00000507899	r.?	-	-	intronic	34	0	0	25	4	16	15	1	6.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.661749236	3	2	2	0	1	0.338250764	1	2	NA	1	NA	0.661749236	NA	0.744602433	0.744602433	1	0.654719298	0.654719298	1	NA	NA	0	NA	NA	1	4	NA	1	1	0.00000727	1	0.072431031	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	28737640	C	T	-	-	-	-	-	-	52	0	0	17	5	29.4	25	3	12	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1	1	1	1	0	0	1	1	NA	NA	NA	NA	NA	NA	0.879652695	0.879652695	1	0.932631579	0.932631579	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.84E-08	1	0.00026475	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	19741193	A	G	-	-	-	-	-	-	44	0	0	46	7	15.2	29	4	13.8	0	0	NA	2	0	0	0	0	NA	1	TRUE	FALSE	2.661749236	3	2	2	0	1	0.338250764	1	2	NA	1	NA	0.661749236	NA	0.707372311	0.707372311	1	1.348526316	1.348526316	1	0	NA	0	NA	NA	1	4	NA	1	1	3.53E-09	1	0.0000134	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	19784842	C	A	-	-	-	-	-	-	49	0	0	31	4	12.9	21	2	9.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.661749236	3	2	2	0	1	0.338250764	1	2	NA	1	NA	0.661749236	NA	0.600335711	0.600335711	1	0.928333333	0.928333333	1	NA	NA	0	NA	NA	1	4	NA	1	1	0.0000177	1	0.004928472	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	21204985	A	G	KCNIP4	CCDS43217.1	r.?	-	-	intronic	45	0	0	39	18	46.2	33	5	15.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.661749236	3	2	2	0	1	0.338250764	1	2	NA	1	NA	0.661749236	NA	2.150039524	1.075019762	2	1.485333333	1.485333333	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.15E-31	1	0.00000066	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	21	28811341	A	C	-	-	-	-	-	-	69	0	0	66	25	37.9	49	9	18.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.559012765	5	2	3	2	2	0.440987235	1	3	NA	2	NA	0.559012765	NA	2.48283989	0.970233492	2.559012765	2.166035088	1.083017544	2	NA	NA	0	NA	NA	1	4	NA	1	1	2.57E-40	1	3.35E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	28812322	G	C	IL1RAPL1	CCDS14218.1	r.?	-	-	intronic	47	0	0	59	31	52.5	38	13	34.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5	4.32434803	4	2	1	2	1	0.67565197	NA	3	NA	2	NA	0.32434803	3.670808383	0.917702096	4	3.794927026	1.632684511	2.32434803	NA	NA	0	NA	NA	0	4	NA	1	1	2.25E-55	1	5.88E-21	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	28819010	T	C	-	-	-	-	-	-	61	0	0	44	19	43.2	34	7	20.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	2.156550898	1.078275449	2	2.013017544	1.006508772	2	NA	NA	1	NA	NA	1	4	NA	1	1	2.39E-32	1	3.73E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	28825135	A	T	-	-	-	-	-	-	22	0	0	38	5	13.2	35	2	5.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.7646161	5.384331439	2	3	2	2	0.2353839	0.615668561	3	4	2	2	0.7646161	0.384331439	0.891875433	0.891875433	1	0.692906892	0.692906892	1	NA	NA	0	NA	NA	0	4	NA	1	1	0.00000137	1	0.013332991	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	21474333	G	A	KCNIP4	CCDS43217.1	r.?	-	-	intronic	50	0	0	32	6	18.8	25	0	0	128	0	0	425	88	20.7	392	4	1	0.551667648	TRUE	TRUE	2.661749236	3	2	2	0	1	0.338250764	1	2	NA	1	NA	0.661749236	NA	0.874907858	0.874907858	1	0	0	1	0.963329397	0.963329397	1	0.097719298	0.097719298	1	3	2	1	1	1.27E-08	4.00E-111	1	0.135270121	YES	1_1	0_0	somatic	custom.pulldown.HiSeq
PD9852b	10	28893900	A	G	WAC	CCDS7159.1	r.?	-	-	intronic	49	0	0	35	18	51.4	35	4	11.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.051896208	1.025948104	2	1	1	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.60E-32	1	0.0000289	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	21	28895283	T	C	-	-	-	-	-	-	39	0	0	37	7	18.9	34	6	17.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.559012765	5	2	3	2	2	0.440987235	1	3	NA	2	NA	0.559012765	NA	1.238144431	1.238144431	1	2.071859649	2.071859649	1	NA	NA	0	NA	NA	1	4	NA	1	1	7.05E-10	1	1.86E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	28931758	T	C	IL1RAPL1	CCDS14218.1	r.?	-	-	intronic	56	1	1.8	59	39	66.1	36	7	19.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5	4.32434803	4	2	1	2	1	0.67565197	NA	3	NA	2	NA	0.32434803	4.621722555	1.155430639	4	2.152677904	0.926142676	2.32434803	NA	NA	0	NA	NA	0	4	NA	0.244746891	1	4.61E-75	1	5.74E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	28973430	G	A	-	-	-	-	-	-	39	0	0	41	5	12.2	29	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3.455620428	2	2	1	1	1	0.544379572	NA	3	NA	1	NA	0.455620428	0.609025948	0.609025948	1	0	0	1	NA	NA	0	NA	NA	0	3	NA	1	1	0.00000202	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	21	28983368	T	G	-	-	-	-	-	-	55	0	0	67	10	14.9	37	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.559012765	5	2	3	2	2	0.440987235	1	3	NA	2	NA	0.559012765	NA	0.976103281	0.976103281	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	1.87E-12	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	29006864	G	A	IL1RAPL1	CCDS14218.1	r.?	-	-	intronic	48	0	0	56	34	60.7	47	13	27.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5	4.32434803	4	2	1	2	1	0.67565197	NA	3	NA	2	NA	0.32434803	4.244153693	1.061038423	4	3.073668966	1.322378975	2.32434803	NA	NA	0	NA	NA	0	4	NA	1	1	1.12E-63	1	1.47E-19	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	29058397	G	C	-	-	-	-	-	-	53	0	0	48	19	39.6	31	5	16.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.976838323	0.988419162	2	1.573280702	1.573280702	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.92E-31	1	0.000000476	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	29096243	G	T	IL1RAPL1	CCDS14218.1	r.?	-	-	intronic	30	0	0	48	8	16.7	29	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	5	4.32434803	4	2	1	2	1	0.67565197	NA	3	NA	2	NA	0.32434803	1.167666667	1.167666667	1	0	NA	0	NA	NA	0	NA	NA	0	NA	NA	1	1	1.23E-10	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	29137469	G	A	-	-	-	-	-	-	50	0	0	28	12	42.9	23	4	17.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1	1	1	1	0	0	1	1	NA	NA	NA	NA	NA	NA	1.28357485	1.28357485	1	1.352315789	1.352315789	1	NA	NA	1	NA	NA	1	4	NA	1	1	6.90E-21	1	0.00000513	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	29145103	G	A	IL1RAPL1	CCDS14218.1	r.?	-	-	intronic	50	0	0	69	7	10.1	51	0	0	100	0	0	609	31	5.1	527	0	0	1	FALSE	FALSE	5	4.32434803	4	2	1	2	1	0.67565197	NA	3	NA	2	NA	0.32434803	0.706193613	0.706193613	1	0	NA	0	0.356592814	0.356592814	1	0	NA	0	NA	NA	1	1	6.43E-08	3.33E-21	1	1	YES	1_1	0_0	somatic	custom.pulldown.HiSeq
PD9852b	4	21815002	C	T	KCNIP4	CCDS43216.1	r.?	-	-	intronic	52	0	0	36	20	55.6	29	10	34.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.661749236	3	2	2	0	1	0.338250764	1	2	NA	1	NA	0.661749236	NA	2.587493453	1.293746727	2	3.371315789	1.685657895	2	NA	NA	0	NA	NA	1	4	NA	1	1	6.46E-37	1	1.79E-16	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	29195973	T	G	-	-	-	-	-	-	44	0	0	35	7	20	43	3	7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.998403194	0.998403194	1	0.684035088	0.684035088	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.65E-10	1	0.001328364	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	29247231	G	A	-	-	-	-	-	-	49	0	0	30	10	33.3	28	1	3.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.329341317	1.329341317	1	0.315789474	0.315789474	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.68E-16	1	0.130947004	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	29254237	A	T	EPB41	CCDS331.1	r.?	-	-	intronic	67	0	0	38	8	21.1	34	5	14.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.053315369	1.053315369	1	1.730473684	1.730473684	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.67E-11	1	0.000000771	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	29257712	G	A	OR12D3	ENST00000396806	r.?	-	-	intronic	47	0	0	57	13	22.8	49	5	10.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.293868134	5.486552635	2	3	2	2	0.706131866	0.513447365	3	3	2	3	0.293868134	0.486552635	1.433181575	1.433181575	1	1.250365211	1.250365211	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.44E-18	1	0.00000496	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	29260443	C	G	FAM179A	CCDS1769.2	r.?	-	-	intronic	33	0	0	34	11	32.4	12	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	4	4	0	0	1	1	NA	NA	NA	NA	NA	NA	1.941413174	0.970706587	2	0	0	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.26E-17	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	29266709	G	T	C14orf23	ENST00000399387	r.?	-	-	downstream	62	0	0	33	6	18.2	34	2	5.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.726546906	0.726546906	1	0.51754386	0.51754386	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.54E-08	1	0.012612579	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	17	29267372	G	C	ADAP2	CCDS11261.1	r.?	-	-	intronic	27	0	0	30	17	56.7	41	10	24.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	3.601202326	2	3	0	0	1	0.398797674	NA	3	NA	1	NA	0.601202326	2.263473054	1.131736527	2	2.531044245	1.055130357	2.398797674	NA	NA	0	NA	NA	1	4	NA	1	1	8.59E-32	1	9.51E-15	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	22973082	G	A	-	-	-	-	-	-	52	0	0	36	8	22.2	28	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.661749236	3	2	2	0	1	0.338250764	1	2	NA	1	NA	0.661749236	NA	1.033135875	1.033135875	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	1.04E-11	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	29303145	C	T	-	-	-	-	-	-	28	0	0	50	22	44	25	4	16	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	4	4	0	0	1	1	NA	NA	NA	NA	NA	NA	2.636487026	0.878829009	3	1.723508772	1.723508772	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.85E-37	1	0.00000727	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	21	29310717	T	C	-	-	-	-	-	-	27	0	0	42	6	14.3	30	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.559012765	5	2	3	2	2	0.440987235	1	3	NA	2	NA	0.559012765	NA	0.936797109	0.936797109	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	7.02E-08	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	29311585	G	A	CHN2	CCDS5420.1	r.?	-	-	intronic	30	0	0	96	20	20.8	38	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	10.19837984	8.289880778	8	6	2	2	0.801620163	0.710119222	8	6	3	3	0.198379837	0.289880778	2.535602327	0.905048572	2.801620163	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	1.43E-26	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	29322411	C	T	CHN2	CCDS5420.1	r.?	-	-	intronic	35	0	0	110	17	15.5	47	10	21.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	10.19837984	8.289880778	8	6	2	2	0.801620163	0.710119222	8	6	3	3	0.198379837	0.289880778	1.88951135	1.048784526	1.801620163	3.208165658	1.069388553	3	NA	NA	1	NA	NA	0	4	NA	1	1	1.90E-20	1	4.27E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	156418336	G	C	-	-	-	-	-	-	37	0	0	51	16	31.4	36	7	19.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.881493014	0.940746507	2	2.089754386	1.044877193	2	NA	NA	1	NA	NA	1	4	NA	1	1	9.28E-25	1	5.74E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	29393035	T	C	CLIP4	CCDS1770.1	r.?	-	-	intronic	54	0	0	54	15	27.8	28	6	21.4	1	0	0	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	4	4	0	0	1	1	NA	NA	NA	NA	NA	NA	1.665780439	0.83289022	2	2.305192982	1.152596491	2	NA	NA	1	NA	NA	1	4	NA	1	1	2.20E-22	1	5.36E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	24410816	G	T	-	-	-	-	-	-	62	0	0	32	12	37.5	52	9	17.3	86	1	1.2	146	40	27.4	189	36	19	1.53E-34	TRUE	TRUE	2.661749236	3	2	2	0	1	0.338250764	1	2	NA	1	NA	0.661749236	NA	1.745161951	0.872580976	2	1.69054386	1.69054386	1	1.275131666	1.275131666	1	1.856666667	0.928333333	2	4	3	1	0.350192164	5.03E-20	6.80E-57	5.92E-12	4.71E-45	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	18	29499369	T	A	KIAA1012	CCDS11901.1	r.?	-	-	intronic	39	0	0	32	24	75	28	12	42.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.994011976	1.497005988	2	3.763157895	1.881578947	2	NA	NA	1	NA	NA	1	4	NA	1	1	6.03E-49	1	6.90E-21	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	162704587	G	T	SLC4A10	CCDS46438.1	r.?	-	-	intronic	48	0	0	50	11	22	39	1	2.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.318243513	1.318243513	1	0.280070175	0.280070175	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.52E-15	1	0.177567718	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	29579977	A	G	-	-	-	-	-	-	59	0	0	123	15	12.2	56	11	19.6	0	0	NA	1	0	0	0	0	NA	1	TRUE	FALSE	10.19837984	8.289880778	8	6	2	2	0.801620163	0.710119222	8	6	3	3	0.198379837	0.289880778	1.487228288	1.487228288	1	2.952114878	0.984038293	3	0	0	1	NA	NA	0	4	NA	1	1	1.29E-16	1	5.91E-15	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	21	29580913	C	T	-	-	-	-	-	-	44	0	0	53	10	18.9	44	1	2.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.559012765	5	2	3	2	2	0.440987235	1	3	NA	2	NA	0.559012765	NA	1.238144431	1.238144431	1	0.270754386	0.270754386	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.57E-13	1	0.197923942	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	29597559	C	A	ENSG00000205534	ENST00000447140	r.?	-	-	intronic	25	0	0	34	4	11.8	30	8	26.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.499724906	5.626372055	2	3	2	2	0.500275094	0.373627945	3	3	2	3	0.499724906	0.626372055	0.766025423	0.766025423	1	3.310346602	1.103448867	3	NA	NA	0	NA	NA	1	4	NA	1	1	0.0000257	1	2.07E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	29600404	C	G	-	-	-	-	-	-	60	0	0	51	19	37.3	31	8	25.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.862021956	0.931010978	2	2.521157895	1.260578947	2	NA	NA	1	NA	NA	1	4	NA	1	1	7.94E-31	1	2.78E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	29628267	C	T	RBMS3	CCDS33725.1	r.?	-	-	intronic	62	0	0	43	9	20.9	33	5	15.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.37044448	5	2	3	1	2	0.62955552	1	2	NA	2	NA	0.37044448	NA	1.120754234	1.120754234	1	1.789333333	1.789333333	1	NA	NA	0	NA	NA	1	4	NA	1	1	9.45E-13	1	0.00000066	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	29638999	C	A	-	-	-	-	-	-	42	0	0	33	8	24.2	23	5	21.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.966067864	0.966067864	1	1.903508772	1.903508772	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.85E-12	1	9.75E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	28651979	T	A	-	-	-	-	-	-	41	0	0	25	4	16	20	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.661749236	3	2	2	0	1	0.338250764	1	2	NA	1	NA	0.661749236	NA	0.744602433	0.744602433	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	0.00000727	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	29678410	G	T	-	-	-	-	-	-	31	0	0	37	25	67.6	29	7	24.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.698602794	1.349301397	2	2.114035088	1.057017544	2	NA	NA	1	NA	NA	1	4	NA	1	1	5.21E-49	1	1.11E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	32303043	A	G	-	-	-	-	-	-	48	0	0	30	6	20	28	3	10.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.661749236	3	2	2	0	1	0.338250764	1	2	NA	1	NA	0.661749236	NA	0.930753041	0.930753041	1	1.045596491	1.045596491	1	NA	NA	0	NA	NA	1	4	NA	1	1	8.37E-09	1	0.000372895	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	22	29689166	T	C	EWSR1	CCDS13851.1	r.?	-	-	intronic	31	0	0	65	14	21.5	48	10	20.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.292921926	5	3	4	0	1	0.707078074	1	3	NA	1	NA	0.292921926	NA	1.136261647	1.136261647	1	2.448561404	0.816187135	3	NA	NA	0	NA	NA	1	4	NA	1	1	2.93E-19	1	5.37E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	29705675	A	T	-	-	-	-	-	-	41	0	0	47	17	36.2	31	10	32.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.293868134	5.486552635	2	3	2	2	0.706131866	0.513447365	3	3	2	3	0.293868134	0.486552635	2.275490045	0.991988167	2.293868134	3.959489835	1.319829945	3	NA	NA	0	NA	NA	0	4	NA	1	1	1.81E-27	1	3.94E-16	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	29719578	T	G	FAM189A1	CCDS45198.1	r.?	-	-	intronic	46	0	0	49	10	20.4	30	4	13.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3.455620428	2	2	1	1	1	0.544379572	NA	3	NA	1	NA	0.455620428	1.018371257	1.018371257	1	1.360264184	1.360264184	1	NA	NA	1	NA	NA	0	4	NA	1	1	6.72E-14	1	0.0000154	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	29770270	T	A	IL1RAPL1	CCDS14218.1	r.?	-	-	intronic	28	0	0	55	4	7.3	25	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	5	4.32434803	4	2	1	2	1	0.67565197	NA	3	NA	2	NA	0.32434803	0.510417166	0.510417166	1	0	NA	0	NA	NA	0	NA	NA	0	NA	NA	1	1	0.000173903	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	29778886	G	A	-	-	-	-	-	-	43	0	0	30	11	36.7	29	2	6.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.661749236	3	2	2	0	1	0.338250764	1	2	NA	1	NA	0.661749236	NA	1.70793183	0.853965915	2	0.674263158	0.674263158	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.44E-18	1	0.009279585	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	37031255	C	T	-	-	-	-	-	-	45	0	0	37	17	45.9	36	10	27.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.661749236	3	2	2	0	1	0.338250764	1	2	NA	1	NA	0.661749236	NA	2.136078228	1.068039114	2	2.716596491	1.358298246	2	NA	NA	0	NA	NA	1	4	NA	1	1	1.10E-29	1	2.21E-15	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	29854744	G	T	-	-	-	-	-	-	43	0	0	38	4	10.5	24	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	4.362325493	2	2	1	2	1	0.637674507	NA	3	NA	2	NA	0.362325493	0.524161677	0.524161677	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	0.0000403	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	22	29868774	C	A	-	-	-	-	-	-	22	0	0	73	13	17.8	36	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.292921926	5	3	4	0	1	0.707078074	1	3	NA	1	NA	0.292921926	NA	0.940718945	0.940718945	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	7.97E-17	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	29871731	T	G	RBMS3	CCDS33725.1	r.?	-	-	intronic	53	0	0	48	20	41.7	38	7	18.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.37044448	5	2	3	1	2	0.62955552	1	2	NA	2	NA	0.37044448	NA	2.236146007	1.118073003	2	2.166035088	1.083017544	2	NA	NA	0	NA	NA	1	4	NA	1	1	1.40E-33	1	8.61E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	29893134	G	A	IL1RAPL1	CCDS14218.1	r.?	-	-	intronic	57	0	0	60	12	20	46	5	10.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5	4.32434803	4	2	1	2	1	0.67565197	NA	3	NA	2	NA	0.32434803	1.398403194	1.398403194	1	1.209494286	1.209494286	1	NA	NA	0	NA	NA	0	4	NA	1	1	2.74E-16	1	0.00000361	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	17	29898223	G	C	ENSG00000228768	ENST00000412403	r.63g>c	c.59G>C	p.C20S	missense	23	0	0	25	15	60	23	3	13	264	0	0	24	8	33.3	36	12	33.3	1.00E-15	TRUE	TRUE	2	3.601202326	2	3	0	0	1	0.398797674	NA	3	NA	1	NA	0.601202326	2.395209581	1.19760479	2	1.34850718	1.34850718	1	1.329341317	1.329341317	1	3.454253006	1.151417669	3	4	3	1	1	9.52E-29	2.68E-13	0.000205387	2.73E-19	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	21	29924030	C	T	-	-	-	-	-	-	38	0	0	49	15	30.6	43	7	16.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.559012765	5	2	3	2	2	0.440987235	1	3	NA	2	NA	0.559012765	NA	2.004614792	1.002307396	2	1.918824561	1.918824561	1	NA	NA	0	NA	NA	1	4	NA	1	1	4.10E-23	1	2.15E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	29930600	C	A	-	-	-	-	-	-	42	0	0	41	8	19.5	25	5	20	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3.455620428	2	2	1	1	1	0.544379572	NA	3	NA	1	NA	0.455620428	0.973443114	0.973443114	1	2.045510051	2.045510051	1	NA	NA	1	NA	NA	0	4	NA	1	1	3.22E-11	1	0.000000153	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	29994924	T	C	-	-	-	-	-	-	49	0	0	49	8	16.3	34	2	5.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.813698603	0.813698603	1	0.57654386	0.57654386	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.47E-10	1	0.012612579	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	42220957	G	A	-	-	-	-	-	-	38	0	0	41	13	31.7	28	2	7.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.582469062	0.791234531	2	0.693807018	0.693807018	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.89E-20	1	0.008668191	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	30055621	G	A	-	-	-	-	-	-	72	0	0	39	5	12.8	38	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.37044448	5	2	3	1	2	0.62955552	1	2	NA	2	NA	0.37044448	NA	0.686394937	0.686394937	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	0.00000156	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	30057848	C	A	FKBP14	CCDS5423.1	r.?	-	-	intronic	43	0	0	86	37	43	52	9	17.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	10.19837984	8.289880778	8	6	2	2	0.801620163	0.710119222	8	6	3	3	0.198379837	0.289880778	5.241870196	1.048374039	5	2.605693234	0.96146812	2.710119222	NA	NA	1	NA	NA	0	4	NA	1	1	1.66E-61	1	5.92E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	42901953	G	T	GRXCR1	CCDS43225.1	r.?	-	-	intronic	59	0	0	40	8	20	24	2	8.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.998403194	0.998403194	1	0.811070175	0.811070175	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.61E-11	1	0.006413403	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	30070321	C	T	REM1	CCDS13181.1	r.?	-	-	intronic	21	0	0	43	11	25.6	32	1	3.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	4.362325493	2	2	1	2	1	0.637674507	NA	3	NA	2	NA	0.362325493	1.277956088	1.277956088	1	0.345161915	0.345161915	1	NA	NA	0	NA	NA	0	4	NA	1	1	2.42E-16	1	0.14819814	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	30095674	T	G	-	-	-	-	-	-	44	0	0	57	37	64.9	35	6	17.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5	4.32434803	4	2	1	2	1	0.67565197	NA	3	NA	2	NA	0.32434803	4.537818363	1.134454591	4	1.897463513	1.897463513	1	NA	NA	0	NA	NA	0	4	NA	1	1	7.99E-71	1	2.24E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	30137517	C	T	TRIM15	CCDS4677.1	r.?	-	-	intronic	51	0	0	56	5	8.9	38	5	13.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.293868134	5.486552635	2	3	2	2	0.706131866	0.513447365	3	3	2	3	0.293868134	0.486552635	0.559443685	0.559443685	1	1.618119685	1.618119685	1	NA	NA	0	NA	NA	0	4	NA	1	1	0.00000965	1	0.00000137	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	30233275	T	C	-	-	-	-	-	-	51	0	0	36	10	27.8	31	4	12.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.7646161	6	2	3	2	3	0.2353839	1	3	NA	2	NA	0.7646161	NA	1.878343715	0.939171857	2	1.647578947	1.647578947	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.21E-15	1	0.0000177	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	30252179	C	A	KLHL14	CCDS32813.1	r.?	-	-	downstream	46	0	0	42	5	11.9	26	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.4750499	0.4750499	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.00000228	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	30301988	A	C	ENSG00000237496	ENST00000424014	r.?	-	-	intronic	55	0	0	45	6	13.3	28	3	10.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.661749236	3	2	2	0	1	0.338250764	1	2	NA	1	NA	0.661749236	NA	0.618950772	0.618950772	1	1.045596491	1.045596491	1	NA	NA	0	NA	NA	1	4	NA	1	1	0.000000108	1	0.000372895	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	44232228	G	T	KCTD8	CCDS3467.1	r.?	-	-	intronic	49	0	0	54	8	14.8	44	3	6.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.738818363	0.738818363	1	0.664491228	0.664491228	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.31E-10	1	0.00142027	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	55139936	C	G	PDGFRA	CCDS3495.1	r.?	-	-	intronic	28	0	0	55	12	21.8	29	2	6.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.088259481	1.088259481	1	0.674263158	0.674263158	1	NA	NA	1	NA	NA	1	4	NA	1	1	8.78E-17	1	0.009279585	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	30321879	G	A	-	-	-	-	-	-	57	0	0	35	7	20	27	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	4.362325493	2	2	1	2	1	0.637674507	NA	3	NA	2	NA	0.362325493	0.998403194	0.998403194	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	4.65E-10	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	30361491	A	C	-	-	-	-	-	-	46	0	0	62	6	9.7	28	7	25	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5	4.32434803	4	2	1	2	1	0.67565197	NA	3	NA	2	NA	0.32434803	0.678225549	0.678225549	1	2.774069464	1.193482829	2.32434803	NA	NA	0	NA	NA	0	4	NA	1	1	0.000000756	1	8.44E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	164096653	T	A	-	-	-	-	-	-	65	0	0	53	4	7.5	33	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.449401198	0.449401198	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.000150502	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	17	30377993	T	G	LRRC37B	CCDS32609.1	r.?	-	-	intronic	28	0	0	29	12	41.4	26	3	11.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	3.601202326	2	3	0	0	1	0.398797674	NA	3	NA	1	NA	0.601202326	1.652694611	0.826347305	2	1.192910197	1.192910197	1	NA	NA	0	NA	NA	0	4	NA	1	1	1.17E-20	1	0.000298167	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	55957448	A	G	KDR	CCDS3497.1	r.?	-	-	intronic	54	0	0	45	8	17.8	29	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.888578842	0.888578842	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	7.14E-11	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	17	30443569	C	A	ENSG00000224737	ENST00000413205	r.?	-	-	upstream	30	0	0	44	21	47.7	32	6	18.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	3.601202326	2	3	0	0	1	0.398797674	NA	3	NA	1	NA	0.601202326	1.904191617	0.952095808	2	1.950148844	1.950148844	1	NA	NA	0	NA	NA	1	4	NA	1	1	8.60E-37	1	1.27E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	17	30443740	G	T	ENSG00000224737	ENST00000413205	r.?	-	-	upstream	29	0	0	54	17	31.5	33	8	24.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	3.601202326	2	3	0	0	1	0.398797674	NA	3	NA	1	NA	0.601202326	1.25748503	1.25748503	1	2.51029798	1.046481747	2.398797674	NA	NA	0	NA	NA	1	4	NA	1	1	3.02E-26	1	4.85E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	30461810	C	A	-	-	-	-	-	-	46	0	0	50	9	18	36	1	2.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	0.898562874	0.898562874	1	0.329614035	0.329614035	1	NA	NA	0	NA	NA	1	4	NA	1	1	4.07E-12	1	0.165106833	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	30488412	G	A	-	-	-	-	-	-	38	0	0	29	6	20.7	30	4	13.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.033347305	1.033347305	1	1.565666667	1.565666667	1	NA	NA	0	NA	NA	1	4	NA	1	1	6.72E-09	1	0.0000154	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	30490445	A	T	-	-	-	-	-	-	50	0	0	35	6	17.1	32	2	6.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	0.853634731	0.853634731	1	0.729859649	0.729859649	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.24E-08	1	0.011224977	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	59678160	C	A	-	-	-	-	-	-	51	0	0	42	5	11.9	33	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.5940499	0.5940499	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.00000228	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	17	30496492	C	T	RHOT1	CCDS32610.1	r.?	-	-	intronic	42	0	0	52	19	36.5	43	12	27.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	3.601202326	2	3	0	0	1	0.398797674	NA	3	NA	1	NA	0.601202326	1.457085828	0.728542914	2	2.89410387	0.96470129	3	NA	NA	0	NA	NA	1	4	NA	1	1	1.24E-30	1	3.24E-18	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	22	30508869	T	A	HORMAD2	CCDS46683.1	r.?	-	-	intronic	57	0	0	50	21	42	31	14	45.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.292921926	5	3	4	0	1	0.707078074	1	3	NA	1	NA	0.292921926	NA	2.219673915	1.109836958	2	5.320912281	1.33022807	4	NA	NA	0	NA	NA	1	4	NA	1	1	2.79E-35	1	1.49E-24	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	30528921	A	G	-	-	-	-	-	-	38	0	0	19	7	36.8	31	6	19.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1	2.620991218	1	2	0	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.101061876	1.101061876	1	1.822226682	1.822226682	1	NA	NA	0	NA	NA	0	4	NA	1	1	3.73E-12	1	1.03E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	30548186	T	C	-	-	-	-	-	-	41	0	0	38	7	18.4	37	2	5.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.918530938	0.918530938	1	0.527684211	0.527684211	1	NA	NA	1	NA	NA	1	4	NA	1	1	8.61E-10	1	0.014826063	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	61632651	C	A	-	-	-	-	-	-	68	0	0	40	8	20	39	4	10.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.998403194	0.998403194	1	1.006508772	1.006508772	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.61E-11	1	0.0000447	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	30588087	C	A	PPP1R10	CCDS4681.1	r.?	-	-	upstream	32	0	0	64	21	32.8	44	6	13.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.293868134	5.486552635	2	3	2	2	0.706131866	0.513447365	3	3	2	3	0.293868134	0.486552635	2.061769986	1.030884993	2	1.667153615	1.667153615	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.60E-32	1	9.37E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	30588658	A	C	-	-	-	-	-	-	37	0	0	48	11	22.9	15	1	6.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.143171657	1.143171657	1	0.788719298	0.788719298	1	NA	NA	0	NA	NA	1	4	NA	1	1	9.31E-16	1	0.072431031	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	30589728	T	C	AC006978.1	ENST00000507825	r.?	-	-	intronic	46	0	0	71	7	9.9	46	5	10.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	10.19837984	8.289880778	8	6	2	2	0.801620163	0.710119222	8	6	3	3	0.198379837	0.289880778	1.206849185	1.206849185	1	1.641737356	1.641737356	1	NA	NA	0	NA	NA	0	4	NA	1	1	7.85E-08	1	0.00000361	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	17	30590896	G	T	RHBDL3	CCDS32613.1	r.?	-	-	upstream	13	0	0	40	9	22.5	18	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	3.601202326	2	3	0	0	1	0.398797674	NA	3	NA	1	NA	0.601202326	0.898203593	0.898203593	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	4.64E-13	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	30597860	G	T	-	-	-	-	-	-	21	0	0	28	9	32.1	12	4	33.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.602437126	1.602437126	1	3.920052632	1.306684211	3	NA	NA	0	NA	NA	1	4	NA	1	1	1.24E-14	1	0.0000003	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	30600451	A	G	-	-	-	-	-	-	58	0	0	29	13	44.8	24	5	20.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.788423154	0.894211577	2	1.824561404	1.824561404	1	NA	NA	1	NA	NA	1	4	NA	1	1	7.69E-23	1	0.000000123	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	30653097	C	A	-	-	-	-	-	-	45	0	0	50	22	44	35	5	14.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	2.196487026	1.098243513	2	1.683385965	1.683385965	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.85E-37	1	0.000000895	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	30694662	C	T	LCLAT1	CCDS1772.1	r.?	-	-	intronic	42	0	0	38	5	13.2	37	3	8.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	4	4	0	0	1	1	NA	NA	NA	NA	NA	NA	0.790946108	0.790946108	1	0.872526316	0.872526316	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.00000137	1	0.000855237	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	30709855	G	T	TM9SF4	CCDS13196.2	r.?	-	-	intronic	17	0	0	56	11	19.6	9	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	4.362325493	2	2	1	2	1	0.637674507	NA	3	NA	2	NA	0.362325493	0.97843513	0.97843513	1	0	0	1	NA	NA	0	NA	NA	1	4	NA	1	1	5.91E-15	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	30721596	C	A	MAP3K8	CCDS7166.1	r.?	-	-	upstream	17	0	0	36	19	52.8	23	6	26.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.107784431	1.053892216	2	2.289473684	1.144736842	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.51E-34	1	1.47E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	30734219	G	A	GK	CCDS48090.1	r.?	-	-	intronic	59	0	0	66	6	9.1	43	4	9.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5	4.32434803	4	2	1	2	1	0.67565197	NA	3	NA	2	NA	0.32434803	0.636273453	0.636273453	1	1.03195384	1.03195384	1	NA	NA	0	NA	NA	0	4	NA	1	1	0.0000011	1	0.000066	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	30770576	G	A	-	-	-	-	-	-	56	0	0	24	7	29.2	21	3	14.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1	1	1	1	0	0	1	1	NA	NA	NA	NA	NA	NA	0.873668663	0.873668663	1	1.111385965	1.111385965	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.51E-11	1	0.000155401	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	30806562	C	A	-	-	-	-	-	-	33	0	0	57	21	36.8	40	8	20	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.293868134	5.486552635	2	3	2	2	0.706131866	0.513447365	3	3	2	3	0.293868134	0.486552635	2.31320535	1.008429959	2.293868134	2.451696492	0.975431802	2.513447365	NA	NA	0	NA	NA	1	4	NA	1	1	8.56E-34	1	2.61E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	21	30827762	A	T	BACH1	ENST00000422809	r.?	-	-	intronic	56	0	0	53	15	28.3	49	5	10.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.559012765	5	2	3	2	2	0.440987235	1	3	NA	2	NA	0.559012765	NA	1.853941131	0.926970566	2	1.200736842	1.200736842	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.60E-22	1	0.00000496	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	30830997	A	G	-	-	-	-	-	-	57	0	0	30	16	53.3	34	4	11.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.127744511	1.063872255	2	1.035087719	1.035087719	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.08E-29	1	0.0000257	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	30834495	C	T	ENSG00000183355	ENST00000331219	r.?	-	-	upstream	25	0	0	50	5	10	44	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.499724906	5.626372055	2	3	2	2	0.500275094	0.373627945	3	3	2	3	0.499724906	0.626372055	0.649174087	0.649174087	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	0.00000549	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	30835627	C	A	ENSG00000183355	ENST00000331219	r.?	-	-	upstream	21	0	0	46	8	17.4	36	7	19.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.499724906	5.626372055	2	3	2	2	0.500275094	0.373627945	3	3	2	3	0.499724906	0.626372055	1.129562912	1.129562912	1	2.405270565	1.01333091	2.373627945	NA	NA	0	NA	NA	1	4	NA	1	1	8.61E-11	1	5.74E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	30854838	T	C	TAB3	CCDS14226.1	r.?	-	-	intronic	18	0	0	54	35	64.8	23	5	21.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5	4.32434803	4	2	1	2	1	0.67565197	NA	3	NA	2	NA	0.32434803	4.530826347	1.132706587	4	2.407892294	1.035943096	2.32434803	NA	NA	0	NA	NA	0	4	NA	1	1	4.87E-67	1	9.75E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	65665320	G	T	-	-	-	-	-	-	36	0	0	36	17	47.2	27	7	25.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	2.356231537	1.178115768	2	2.530929825	1.265464912	2	NA	NA	1	NA	NA	1	4	NA	1	1	6.00E-30	1	6.36E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	30886495	T	C	-	-	-	-	-	-	46	0	0	30	9	30	25	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.19760479	1.19760479	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	2.54E-14	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	67720455	G	T	-	-	-	-	-	-	52	0	0	35	11	31.4	31	5	16.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.567493014	1.567493014	1	1.573280702	1.573280702	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.82E-17	1	0.000000476	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	30916938	G	A	PCDH7	CCDS43220.1	r.?	-	-	intronic	28	0	0	31	9	29	30	4	13.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.661749236	3	2	2	0	1	0.338250764	1	2	NA	1	NA	0.661749236	NA	1.349591909	1.349591909	1	1.299666667	1.299666667	1	NA	NA	0	NA	NA	1	4	NA	1	1	3.57E-14	1	0.0000154	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	30939268	T	A	DCDC5	ENST00000406071	r.?	-	-	intronic	40	0	0	38	7	18.4	40	8	20	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.918530938	0.918530938	1	1.954385965	0.977192982	2	NA	NA	1	NA	NA	1	4	NA	1	1	8.61E-10	1	2.61E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	31002064	G	T	-	-	-	-	-	-	34	0	0	47	6	12.8	22	0	0	0	0	NA	0	0	NA	1	0	0	1	TRUE	FALSE	3.37044448	5	2	3	1	2	0.62955552	1	2	NA	2	NA	0.37044448	NA	0.686394937	0.686394937	1	0	0	1	NA	NA	0	0	0	1	3	NA	1	1	0.000000141	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	31030211	G	T	ZNF536	CCDS32984.1	r.?	-	-	intronic	36	0	0	38	19	50	27	2	7.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.7646161	6	2	3	2	3	0.2353839	1	3	NA	2	NA	0.7646161	NA	3.378316034	1.221983781	2.7646161	0.945122807	0.945122807	1	NA	NA	0	NA	NA	1	4	NA	1	1	6.16E-34	1	0.00807567	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	31103887	A	G	ADCYAP1R1	CCDS5433.1	r.?	-	-	intronic	39	0	0	96	29	30.2	24	4	16.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	10.19837984	8.289880778	8	6	2	2	0.801620163	0.710119222	8	6	3	3	0.198379837	0.289880778	3.681499533	0.96840278	3.801620163	2.515322371	2.515322371	1	NA	NA	1	NA	NA	0	4	NA	1	1	4.14E-43	1	0.00000613	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	31141012	G	A	SCFD1	CCDS9639.1	r.?	-	-	intronic	54	0	0	25	14	56	21	3	14.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.235528942	1.117764471	2	1.254385965	1.254385965	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.58E-26	1	0.000155401	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	69364458	G	T	TMPRSS11E	CCDS33993.1	r.?	-	-	downstream	47	0	0	29	12	41.4	31	6	19.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	2.066694611	1.033347305	2	1.762556591	1.762556591	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.17E-20	1	1.03E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	31163272	G	T	GALNT14	CCDS1773.2	r.?	-	-	intronic	57	0	0	47	12	25.5	29	7	24.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	4	4	0	0	1	1	NA	NA	NA	NA	NA	NA	1.527964072	1.527964072	1	2.596035088	0.865345029	3	NA	NA	1	NA	NA	1	4	NA	1	1	1.09E-17	1	1.11E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	31173525	C	G	DMD	CCDS14233.1	r.?	-	-	intronic	41	0	0	87	8	9.2	41	2	4.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5	4.32434803	3	2	2	2	1	0.67565197	NA	3	NA	2	NA	0.32434803	0.643265469	0.643265469	1	0.543717615	0.543717615	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.61E-08	1	0.018015855	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	31181935	C	T	-	-	-	-	-	-	36	0	0	55	17	30.9	40	9	22.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.293868134	5.486552635	2	3	2	2	0.706131866	0.513447365	3	3	2	3	0.293868134	0.486552635	1.942338188	0.971169094	2	2.758158554	0.919386185	3	NA	NA	0	NA	NA	1	4	NA	1	1	4.35E-26	1	4.64E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	31185383	T	G	DMD	CCDS14233.1	r.?	-	-	intronic	44	0	0	55	35	63.6	35	10	28.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5	4.32434803	3	2	2	2	1	0.67565197	NA	3	NA	2	NA	0.32434803	4.446922156	1.482307385	3	3.173535466	1.365344357	2.32434803	NA	NA	1	NA	NA	0	4	NA	1	1	1.33E-66	1	1.60E-15	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	31216383	C	A	PYCARD	CCDS10708.1	r.?	-	-	upstream	24	0	0	57	6	10.5	41	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.499724906	5.626372055	2	3	2	2	0.500275094	0.373627945	3	3	2	3	0.499724906	0.626372055	0.681632792	0.681632792	1	0	0	1	NA	NA	0	NA	NA	0	3	NA	1	1	0.000000456	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	31216384	T	A	PYCARD	CCDS10708.1	r.?	-	-	upstream	26	0	0	58	6	10.3	42	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.499724906	5.626372055	2	3	2	2	0.500275094	0.373627945	3	3	2	3	0.499724906	0.626372055	0.66864931	0.66864931	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	0.000000506	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	31279387	G	A	-	-	-	-	-	-	29	0	0	39	12	30.8	22	4	18.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.7646161	6	2	3	2	3	0.2353839	1	3	NA	2	NA	0.7646161	NA	2.081042677	1.040521338	2	2.324491228	2.324491228	1	NA	NA	0	NA	NA	1	4	NA	1	1	8.43E-19	1	0.00000425	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	31289574	G	A	DMD	CCDS14233.1	r.?	-	-	intronic	51	0	0	75	9	12	26	7	26.9	0	0	NA	0	0	NA	2	2	100	1.00E-04	TRUE	FALSE	5	4.32434803	3	2	2	2	1	0.67565197	NA	3	NA	2	NA	0.32434803	0.839041916	0.839041916	1	2.984898743	1.284187525	2.32434803	NA	NA	1	11.09627785	4.773931318	2.32434803	4	NA	1	1	1.82E-10	1	4.73E-11	0.000025	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	31328049	C	T	-	-	-	-	-	-	39	0	0	22	7	31.8	25	4	16	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.269461078	1.269461078	1	1.403508772	1.403508772	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.25E-11	1	0.00000727	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	31343243	G	A	TRPM1	CCDS10024.2	r.?	-	-	intronic	35	0	0	43	6	14	26	1	3.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3.455620428	2	2	1	1	1	0.544379572	NA	3	NA	1	NA	0.455620428	0.698882236	0.698882236	1	0.38864691	0.38864691	1	NA	NA	1	NA	NA	1	4	NA	1	1	8.13E-08	1	0.122190858	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	31359855	G	A	DCDC1	CCDS7872.1	r.?	-	-	intronic	50	0	0	44	16	36.4	20	3	15	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.817093812	0.908546906	2	1.465789474	1.465789474	1	NA	NA	1	NA	NA	1	4	NA	1	1	5.57E-26	1	0.0001337	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	31366946	G	T	-	-	-	-	-	-	35	0	0	38	9	23.7	23	5	21.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.661749236	3	2	2	0	1	0.338250764	1	2	NA	1	NA	0.661749236	NA	1.102942353	1.102942353	1	2.120508772	2.120508772	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.79E-13	1	9.75E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	31373869	C	T	-	-	-	-	-	-	27	0	0	47	11	23.4	22	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.168131737	1.168131737	1	0	0	1	NA	NA	1	NA	NA	1	4	NA	1	1	7.21E-16	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	22	31378752	T	A	-	-	-	-	-	-	48	0	0	28	13	46.4	34	11	32.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.292921926	5	3	4	0	1	0.707078074	1	3	NA	1	NA	0.292921926	NA	2.452211183	0.905851666	2.707078074	3.814105263	0.953526316	4	NA	NA	0	NA	NA	1	4	NA	1	1	4.26E-23	1	1.26E-17	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	31385374	G	C	NEUROD6	CCDS5434.1	r.?	-	-	upstream	36	0	0	85	21	24.7	57	8	14	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	10.19837984	8.289880778	8	6	2	2	0.801620163	0.710119222	8	6	3	3	0.198379837	0.289880778	3.011027764	1.003675921	3	2.108653484	1.054326742	2	NA	NA	1	NA	NA	0	4	NA	1	1	1.53E-29	1	5.19E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	70041173	G	A	UGT2B11	CCDS3527.1	r.?	-	-	intronic	45	0	0	36	11	30.6	30	2	6.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	1.527556886	1.527556886	1	0.608717998	0.608717998	1	NA	NA	1	NA	NA	0	4	NA	1	1	2.62E-17	1	0.009909649	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	31438346	C	T	-	-	-	-	-	-	43	0	0	46	12	26.1	29	5	17.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.7646161	6	2	3	2	3	0.2353839	1	3	NA	2	NA	0.7646161	NA	1.76348097	0.999356727	1.7646161	2.19677193	2.19677193	1	NA	NA	0	NA	NA	1	4	NA	1	1	8.12E-18	1	0.000000336	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	21	31445331	G	A	-	-	-	-	-	-	44	0	0	56	10	17.9	41	9	22	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.559012765	5	2	3	2	2	0.440987235	1	3	NA	2	NA	0.559012765	NA	1.172634143	1.172634143	1	2.589824561	0.863274854	3	NA	NA	0	NA	NA	1	4	NA	1	1	2.82E-13	1	5.92E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	31445772	C	A	PUM1	CCDS44099.1	r.?	-	-	intronic	30	0	0	37	17	45.9	31	7	22.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	2.291335329	1.145667665	2	2.66045614	0.886818713	3	NA	NA	0	NA	NA	1	4	NA	1	1	1.10E-29	1	1.85E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	31463506	C	G	-	-	-	-	-	-	45	0	0	20	9	45	26	4	15.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1	2.620991218	1	2	0	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.346407186	1.346407186	1	1.44650984	1.44650984	1	NA	NA	0	NA	NA	1	4	NA	1	1	3.12E-16	1	0.00000856	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	31473722	T	A	-	-	-	-	-	-	64	0	0	46	12	26.1	34	3	8.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.7646161	6	2	3	2	3	0.2353839	1	3	NA	2	NA	0.7646161	NA	1.76348097	0.999356727	1.7646161	1.123929825	1.123929825	1	NA	NA	0	NA	NA	1	4	NA	1	1	8.12E-18	1	0.000666058	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	72458582	C	T	-	-	-	-	-	-	53	0	0	37	19	51.4	30	2	6.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	2.565896208	1.282948104	2	0.608717998	0.608717998	1	NA	NA	1	NA	NA	0	4	NA	1	1	3.09E-34	1	0.009909649	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	31501223	A	G	-	-	-	-	-	-	43	0	0	100	23	23	31	6	19.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	10.19837984	8.289880778	8	6	2	2	0.801620163	0.710119222	8	6	3	3	0.198379837	0.289880778	2.803791035	1.000774863	2.801620163	2.921991257	0.973997086	3	NA	NA	1	NA	NA	0	4	NA	1	1	2.05E-31	1	1.03E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	31539787	T	A	-	-	-	-	-	-	40	0	0	46	15	32.6	28	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.7646161	6	2	3	2	3	0.2353839	1	3	NA	2	NA	0.7646161	NA	2.202662054	1.101331027	2	0	0	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.35E-23	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	31541066	T	A	-	-	-	-	-	-	37	0	0	77	17	22.1	32	2	6.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	10.19837984	8.289880778	8	6	2	2	0.801620163	0.710119222	8	6	3	3	0.198379837	0.289880778	2.694077473	0.961614107	2.801620163	0.933832257	0.933832257	1	NA	NA	1	NA	NA	0	4	NA	1	1	2.82E-23	1	0.011224977	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	31542299	C	T	-	-	-	-	-	-	44	0	0	55	17	30.9	27	4	14.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.7646161	6	2	3	2	3	0.2353839	1	3	NA	2	NA	0.7646161	NA	2.087799309	1.043899654	2	1.890245614	1.890245614	1	NA	NA	0	NA	NA	1	4	NA	1	1	4.35E-26	1	0.00001	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	72695847	A	G	-	-	-	-	-	-	64	0	0	44	9	20.5	36	8	22.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	1.023363273	1.023363273	1	2.016946202	1.535652186	1.313413428	NA	NA	1	NA	NA	0	4	NA	1	1	1.18E-12	1	1.04E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	31598937	A	G	ELP4	CCDS7875.2	r.?	-	-	intronic	51	0	0	43	8	18.6	23	2	8.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.92851497	0.92851497	1	0.850157895	0.850157895	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.85E-11	1	0.00589844	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	31602326	C	T	-	-	-	-	-	-	33	0	0	34	9	26.5	25	5	20	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.322884232	1.322884232	1	2.354385965	1.177192982	2	NA	NA	0	NA	NA	1	4	NA	1	1	9.15E-14	1	0.000000153	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	31613667	G	T	DMD	CCDS14233.1	r.?	-	-	intronic	47	0	0	69	40	58	51	19	37.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5	4.32434803	3	2	2	2	1	0.67565197	NA	3	NA	2	NA	0.32434803	4.055369261	1.351789754	3	4.13891164	1.780676382	2.32434803	NA	NA	1	NA	NA	0	4	NA	1	1	1.87E-73	1	7.94E-31	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	31633197	T	G	DMD	CCDS14233.1	r.?	-	-	intronic	49	0	0	57	8	14	28	2	7.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5	4.32434803	3	2	2	2	1	0.67565197	NA	3	NA	2	NA	0.32434803	0.978882236	0.978882236	1	0.787835728	0.787835728	1	NA	NA	1	NA	NA	0	4	NA	1	1	5.19E-10	1	0.008668191	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	31647843	C	G	CCDC129	CCDS5435.2	r.?	-	-	intronic	58	0	0	91	16	17.6	45	4	8.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	10.19837984	8.289880778	8	6	2	2	0.801620163	0.710119222	8	6	3	3	0.198379837	0.289880778	2.145509662	1.072754831	2	1.340501144	1.340501144	1	NA	NA	0	NA	NA	0	4	NA	1	1	2.79E-20	1	0.0000791	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	31657415	C	G	-	-	-	-	-	-	53	0	0	54	21	38.9	35	6	17.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.499724906	5.626372055	2	3	2	2	0.500275094	0.373627945	3	3	2	3	0.499724906	0.626372055	2.5252872	1.010226043	2.499724906	2.120109621	1.060054811	2	NA	NA	0	NA	NA	1	4	NA	1	1	2.12E-34	1	2.24E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	31705623	C	T	OSBPL10	CCDS2651.1	r.2321g>a	c.2198G>A	p.R733Q	missense	25	0	0	34	15	44.1	26	4	15.4	214	0	0	91	37	40.7	69	14	20.3	9.24E-15	TRUE	TRUE	3.37044448	5	2	3	1	2	0.62955552	1	2	NA	2	NA	0.37044448	NA	2.364845058	1.182422529	2	1.812877193	1.812877193	1	2.182521402	1.091260701	2	2.389701754	1.194850877	2	4	3	1	1	5.18E-26	2.38E-60	0.00000856	7.30E-19	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	3	31718421	G	A	OSBPL10	CCDS2651.1	r.?	-	-	intronic	35	0	0	40	12	30	25	3	12	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.37044448	5	2	3	1	2	0.62955552	1	2	NA	2	NA	0.37044448	NA	1.608738134	1.608738134	1	1.412631579	1.412631579	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.20E-18	1	0.00026475	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	31719448	A	C	-	-	-	-	-	-	49	0	0	41	7	17.1	29	3	10.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.7646161	6	2	3	2	3	0.2353839	1	3	NA	2	NA	0.7646161	NA	1.155384084	1.155384084	1	1.315508772	1.315508772	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.51E-09	1	0.000414371	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	31746215	A	G	OSBPL10	CCDS2651.1	r.?	-	-	intronic	34	0	0	38	11	28.9	30	5	16.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.37044448	5	2	3	1	2	0.62955552	1	2	NA	2	NA	0.37044448	NA	1.549751069	1.549751069	1	1.965912281	1.965912281	1	NA	NA	0	NA	NA	1	4	NA	1	1	5.19E-17	1	0.000000401	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	171462902	C	T	MYO3B	CCDS42773.1	r.?	-	-	intronic	42	0	0	42	9	21.4	32	6	18.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.282291417	1.282291417	1	2.025122807	2.025122807	1	NA	NA	1	NA	NA	1	4	NA	1	1	7.51E-13	1	1.27E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	31748040	T	C	-	-	-	-	-	-	17	0	0	31	7	22.6	29	5	17.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.7646161	6	2	3	2	3	0.2353839	1	3	NA	2	NA	0.7646161	NA	1.526998847	1.526998847	1	2.19677193	2.19677193	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.85E-10	1	0.000000336	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	31758954	T	C	DMD	CCDS14233.1	r.?	-	-	intronic	49	0	0	63	6	9.5	28	5	17.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5	4.32434803	3	2	2	2	1	0.67565197	NA	3	NA	2	NA	0.32434803	0.664241517	0.664241517	1	1.986233736	1.986233736	1	NA	NA	1	NA	NA	0	4	NA	1	1	0.000000832	1	0.000000279	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	31797125	C	T	PDZD2	CCDS34137.1	r.?	-	-	intronic	18	0	0	22	17	77.3	34	7	20.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	3.085828343	1.542914172	2	1.807017544	1.807017544	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.96E-35	1	3.73E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	31823260	T	C	NEU1	CCDS4723.1	r.?	-	-	downstream	52	0	0	50	18	36	30	1	3.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.293868134	5.486552635	2	3	2	2	0.706131866	0.513447365	3	3	2	3	0.293868134	0.486552635	2.262918277	0.986507569	2.293868134	0.404529921	0.404529921	1	NA	NA	0	NA	NA	0	4	NA	1	1	5.92E-29	1	0.139615808	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	79537159	G	A	-	-	-	-	-	-	55	0	0	39	13	33.3	41	8	19.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	1.662341317	0.831170659	2	1.771641934	1.771641934	1	NA	NA	1	NA	NA	0	4	NA	1	1	8.79E-21	1	3.22E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	31853322	A	G	HEATR5A	CCDS45094.1	r.?	-	-	intronic	47	0	0	33	22	66.7	30	6	20	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.662674651	1.331337325	2	1.754385965	1.754385965	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.38E-43	1	8.37E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	31862346	C	T	OSBPL10	CCDS2651.1	r.?	-	-	intronic	36	0	0	63	16	25.4	34	4	11.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.37044448	5	2	3	1	2	0.62955552	1	2	NA	2	NA	0.37044448	NA	1.362064954	1.362064954	1	1.389087719	1.389087719	1	NA	NA	0	NA	NA	1	4	NA	1	1	4.48E-23	1	0.0000257	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	81405174	C	A	C4orf22	CCDS3587.1	r.?	-	-	intronic	31	0	0	45	18	40	33	5	15.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	1.996806387	0.998403194	2	1.380972174	1.380972174	1	NA	NA	1	NA	NA	0	4	NA	1	1	5.76E-30	1	0.00000066	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	31896201	C	T	SERINC2	CCDS30662.1	r.?	-	-	intronic	41	0	0	55	10	18.2	21	1	4.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	0.908546906	0.908546906	1	0.565052632	0.565052632	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.33E-13	1	0.099912572	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	84581744	A	T	-	-	-	-	-	-	49	0	0	30	12	40	26	6	23.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	1.996806387	0.998403194	2	2.098714291	1.597908356	1.313413428	NA	NA	1	NA	NA	0	4	NA	1	1	1.94E-20	1	3.30E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	32033316	C	T	-	-	-	-	-	-	46	0	0	40	15	37.5	31	9	29	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.661749236	3	2	2	0	1	0.338250764	1	2	NA	1	NA	0.661749236	NA	1.745161951	0.872580976	2	2.833859649	1.416929825	2	NA	NA	0	NA	NA	1	4	NA	1	1	1.09E-24	1	3.57E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	95415174	A	G	PDLIM5	CCDS3641.1	r.?	-	-	intronic	43	0	0	47	9	19.1	34	1	2.9	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	0.95347505	0.95347505	1	0.263474954	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	2.24E-12	1	0.156694864	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	32102347	C	A	FKBPL	CCDS4738.1	r.?	-	-	upstream	50	0	0	45	16	35.6	34	7	20.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.293868134	5.486552635	2	3	2	2	0.706131866	0.513447365	3	3	2	3	0.293868134	0.486552635	2.23777474	0.975546374	2.293868134	2.525247387	1.004694756	2.513447365	NA	NA	0	NA	NA	1	4	NA	1	1	8.61E-26	1	3.73E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	32134353	C	G	DMD	CCDS14233.1	r.?	-	-	intronic	44	0	0	58	11	19	36	0	0	0	0	NA	0	0	NA	2	0	0	1	FALSE	FALSE	5	4.32434803	3	2	2	2	1	0.67565197	NA	3	NA	2	NA	0.32434803	1.328483034	1.328483034	1	0	NA	0	NA	NA	1	0	NA	0	NA	NA	1	1	8.96E-15	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	96941037	T	G	-	-	-	-	-	-	54	0	0	51	12	23.5	34	3	8.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	1.173123752	1.173123752	1	0.799510206	0.799510206	1	NA	NA	1	NA	NA	0	4	NA	1	1	3.24E-17	1	0.000666058	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	102395550	G	T	BANK1	ENST00000504592	r.?	-	-	intronic	49	0	0	36	9	25	29	4	13.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	1.248003992	1.248003992	1	1.253777369	1.253777369	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.63E-13	1	0.0000134	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	32141367	T	A	-	-	-	-	-	-	35	0	0	38	4	10.5	32	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3.455620428	2	2	1	1	1	0.544379572	NA	3	NA	1	NA	0.455620428	0.524161677	0.524161677	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.0000403	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	32163812	G	A	GPD1L	CCDS33729.1	r.?	-	-	intronic	39	0	0	39	7	17.9	23	7	30.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.37044448	5	2	3	1	2	0.62955552	1	2	NA	2	NA	0.37044448	NA	0.95988042	0.95988042	1	3.578666667	1.192888889	3	NA	NA	0	NA	NA	1	4	NA	1	1	1.04E-09	1	1.79E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	21	32185581	C	G	KRTAP8-1	CCDS13607.1	r.?	-	-	upstream	40	0	0	63	5	7.9	32	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.559012765	5	2	3	2	2	0.440987235	1	3	NA	2	NA	0.559012765	NA	0.51753127	0.51753127	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	0.0000173	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	32263487	T	A	-	-	-	-	-	-	55	0	0	54	14	25.9	36	7	19.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.7646161	6	2	3	2	3	0.2353839	1	3	NA	2	NA	0.7646161	NA	1.749967706	0.991698821	1.7646161	2.477754386	0.825918129	3	NA	NA	0	NA	NA	1	4	NA	1	1	1.64E-20	1	5.74E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	32279160	A	T	DMD	CCDS14233.1	r.?	-	-	intronic	58	0	0	74	11	14.9	34	5	14.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	4.32434803	5	2	1	2	1	0.67565197	NA	3	NA	2	NA	0.32434803	1.190810379	1.190810379	1	1.631152845	1.631152845	1	NA	NA	0	NA	NA	0	4	NA	1	1	1.53E-13	1	0.000000771	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	105649431	C	A	-	-	-	-	-	-	51	0	0	46	7	15.2	33	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	0.758786427	0.758786427	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	3.53E-09	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	32314068	C	G	PDE1C	ENST00000396193	r.?	-	-	intronic	53	0	0	99	8	8.1	54	2	3.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	10.19837984	8.289880778	8	6	2	2	0.801620163	0.710119222	8	6	3	3	0.198379837	0.289880778	0.98742206	0.98742206	1	0.557286992	0.557286992	1	NA	NA	1	NA	NA	0	4	NA	1	1	4.46E-08	1	0.030129377	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	116838886	C	A	-	-	-	-	-	-	52	0	0	39	7	17.9	27	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	0.893570858	0.893570858	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	1.04E-09	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	32377486	C	T	-	-	-	-	-	-	60	0	0	32	16	50	30	9	30	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.996007984	0.998003992	2	2.631578947	1.315789474	2	NA	NA	1	NA	NA	1	4	NA	1	1	8.51E-29	1	2.54E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	32383598	A	T	-	-	-	-	-	-	97	0	0	57	13	22.8	65	10	15.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.499724906	5.626372055	2	3	2	2	0.500275094	0.373627945	3	3	2	3	0.499724906	0.626372055	1.480116919	1.480116919	1	1.90933849	0.954669245	2	NA	NA	0	NA	NA	1	4	NA	1	1	2.44E-18	1	1.36E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	32419618	T	C	-	-	-	-	-	-	64	0	0	47	21	44.7	19	1	5.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.784431138	0.892215569	2	0.464912281	0.464912281	1	NA	NA	1	NA	NA	1	4	NA	1	1	5.29E-36	1	0.090843738	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	32424056	G	A	BICD1	CCDS8726.1	r.?	-	-	intronic	38	0	0	41	7	17.1	29	3	10.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.853634731	0.853634731	1	1.006508772	1.006508772	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.51E-09	1	0.000414371	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	122659069	C	G	-	-	-	-	-	-	33	0	0	26	9	34.6	28	5	17.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.277661109	2	1	1	1	1	0.722338891	NA	2	NA	1	NA	0.277661109	1.727237525	1.727237525	1	1.619876777	1.619876777	1	NA	NA	1	NA	NA	0	4	NA	1	1	5.65E-15	1	0.000000279	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	32430037	G	A	BICD1	CCDS8726.1	r.?	-	-	intronic	41	0	0	39	25	64.1	27	3	11.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	3.199882236	1.599941118	2	1.084684211	1.084684211	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.20E-48	1	0.000334187	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	21	32461778	C	A	TIAM1	ENST00000461148	r.?	-	-	intronic	47	0	0	58	23	39.7	43	13	30.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.559012765	5	2	3	2	2	0.440987235	1	3	NA	2	NA	0.559012765	NA	2.600758407	1.016313182	2.559012765	3.555122807	1.185040936	3	NA	NA	0	NA	NA	1	4	NA	1	1	8.87E-38	1	3.88E-20	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	32479373	C	T	-	-	-	-	-	-	53	0	0	29	16	55.2	32	12	37.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.203592814	1.101796407	2	3.289473684	1.644736842	2	NA	NA	1	NA	NA	1	4	NA	1	1	9.74E-30	1	5.03E-20	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	32493982	G	A	NLRC4	CCDS33174.1	r.?	-	-	upstream	36	0	0	64	9	14.1	53	1	1.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	1.126874251	1.126874251	1	0.242666667	0.242666667	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.20E-11	1	0.233303855	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	21	32510617	C	A	TIAM1	CCDS13609.1	r.?	-	-	intronic	53	0	0	72	8	11.1	29	0	0	153	0	0	278	19	6.8	271	2	0.7	0.754696206	TRUE	TRUE	4.559012765	5	2	3	2	2	0.440987235	1	3	NA	2	NA	0.559012765	NA	0.727164189	0.727164189	1	0	0	1	0.445469954	0.796886908	0.559012765	0.082403509	0.082403509	1	3	2	1	1	3.52E-09	6.67E-16	1	0.392844877	YES	1_1	0_0	somatic	custom.pulldown.HiSeq
PD9852b	21	32546907	C	T	TIAM1	CCDS13609.1	r.?	-	-	intronic	31	0	0	49	18	36.7	34	8	23.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.559012765	5	2	3	2	2	0.440987235	1	3	NA	2	NA	0.559012765	NA	2.404227545	0.939513698	2.559012765	2.766403509	0.922134503	3	NA	NA	0	NA	NA	1	4	NA	1	1	3.80E-29	1	6.32E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	32578930	A	G	-	-	-	-	-	-	41	0	0	34	5	14.7	41	2	4.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.661749236	3	2	2	0	1	0.338250764	1	2	NA	1	NA	0.661749236	NA	0.684103485	0.684103485	1	0.478824561	0.478824561	1	NA	NA	0	NA	NA	1	4	NA	1	1	0.000000771	1	0.018015855	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	32657421	G	A	FGD4	CCDS8727.1	r.?	-	-	intronic	52	0	0	34	8	23.5	33	4	12.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.173123752	1.173123752	1	1.182403509	1.182403509	1	NA	NA	1	NA	NA	1	4	NA	1	1	6.32E-12	1	0.0000228	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	132087919	A	T	-	-	-	-	-	-	48	0	0	47	6	12.8	32	3	9.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.277661109	2	1	1	1	1	0.722338891	NA	2	NA	1	NA	0.277661109	0.638978044	0.638978044	1	0.850661548	0.850661548	1	NA	NA	1	NA	NA	0	4	NA	1	1	0.000000141	1	0.000556213	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	32710218	G	C	BIRC6	CCDS33175.2	r.?	-	-	intronic	62	0	0	72	39	54.2	46	18	39.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	4.331672655	1.082918164	4	4.993824561	1.24845614	4	NA	NA	1	NA	NA	1	4	NA	1	1	5.35E-70	1	9.41E-30	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	177298710	T	A	-	-	-	-	-	-	41	0	0	52	7	13.5	32	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.808922156	0.808922156	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	8.58E-09	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	32728811	C	T	-	-	-	-	-	-	49	1	2	36	15	41.7	30	3	10	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.661749236	3	2	2	0	1	0.338250764	1	2	NA	1	NA	0.661749236	NA	1.94062009	0.970310045	2	0.977192982	0.977192982	1	NA	NA	0	NA	NA	1	4	NA	0.217776325	1	1.54E-25	1	0.000458697	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	32759253	C	T	CCDC73	CCDS41630.1	r.?	-	-	intronic	45	0	0	31	10	32.3	25	7	28	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.612421158	1.612421158	1	2.736140351	1.368070175	2	NA	NA	1	NA	NA	1	4	NA	1	1	3.94E-16	1	3.47E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	21	32765941	G	A	TIAM1	CCDS13609.1	r.?	-	-	intronic	39	0	0	59	6	10.2	36	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.559012765	5	2	3	2	2	0.440987235	1	3	NA	2	NA	0.559012765	NA	0.668204931	0.668204931	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	0.000000561	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	132410387	C	A	-	-	-	-	-	-	42	0	0	52	12	23.1	38	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.277661109	2	1	1	1	1	0.722338891	NA	2	NA	1	NA	0.277661109	1.153155689	1.153155689	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	4.19E-17	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	17	32811442	G	A	-	-	-	-	-	-	19	0	0	29	12	41.4	19	8	42.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	3.601202326	2	3	0	0	1	0.398797674	NA	3	NA	1	NA	0.601202326	1.652694611	0.826347305	2	4.367088635	1.455696212	3	NA	NA	0	NA	NA	1	4	NA	1	1	1.17E-20	1	2.81E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	32863289	C	T	BSDC1	CCDS44103.1	r.?	-	-	upstream	47	0	0	38	9	23.7	37	2	5.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.183107784	1.183107784	1	0.635684211	0.635684211	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.79E-13	1	0.014826063	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	32874468	C	T	AL669918.1	ENST00000499196	r.?	-	-	downstream	53	0	0	48	10	20.8	42	7	16.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5.408938959	7	3	4	2	3	0.591061041	1	3	NA	3	NA	0.408938959	NA	1.539398625	1.539398625	1	2.299912281	1.14995614	2	NA	NA	0	NA	NA	1	4	NA	1	1	5.37E-14	1	1.81E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	193927559	G	A	-	-	-	-	-	-	55	0	0	49	7	14.3	36	4	11.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.856858283	0.856858283	1	1.195684211	1.195684211	1	NA	NA	1	NA	NA	1	4	NA	1	1	5.58E-09	1	0.0000324	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	32948772	C	T	DMD	CCDS14233.1	r.?	-	-	intronic	39	0	0	61	23	37.7	35	2	5.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7	4.32434803	4	2	3	2	1	0.67565197	NA	3	NA	2	NA	0.32434803	3.38999002	1.129996673	3	0.632487838	0.632487838	1	NA	NA	1	NA	NA	0	4	NA	1	1	3.73E-37	1	0.013332991	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	32954520	A	G	-	-	-	-	-	-	66	0	0	34	8	23.5	44	2	4.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.661749236	3	2	2	0	1	0.338250764	1	2	NA	1	NA	0.661749236	NA	1.093634823	1.093634823	1	0.439736842	0.439736842	1	NA	NA	0	NA	NA	1	4	NA	1	1	6.32E-12	1	0.020580492	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	22	32957068	G	C	SYN3	CCDS13908.1	r.?	-	-	intronic	27	0	0	31	19	61.3	23	6	26.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.292921926	5	3	4	0	1	0.707078074	1	3	NA	1	NA	0.292921926	NA	3.239666929	1.079888976	3	3.072473684	1.024157895	3	NA	NA	0	NA	NA	1	4	NA	1	1	2.54E-36	1	1.47E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	32969165	C	A	-	-	-	-	-	-	56	0	0	34	9	26.5	33	1	3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.661749236	3	2	2	0	1	0.338250764	1	2	NA	1	NA	0.661749236	NA	1.233247779	1.233247779	1	0.293157895	0.293157895	1	NA	NA	0	NA	NA	1	4	NA	1	1	9.15E-14	1	0.15245715	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	17	32998048	G	T	-	-	-	-	-	-	25	0	0	28	4	14.3	29	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	3.601202326	2	3	0	0	1	0.398797674	NA	3	NA	1	NA	0.601202326	0.570858283	0.570858283	1	0	0	1	NA	NA	0	NA	NA	0	3	NA	1	1	0.0000116	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	133845806	G	T	-	-	-	-	-	-	48	0	0	27	4	14.8	27	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.277661109	2	1	1	1	1	0.722338891	NA	2	NA	1	NA	0.277661109	0.738818363	0.738818363	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	0.00001	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	134760446	A	G	-	-	-	-	-	-	62	0	0	40	15	37.5	39	10	25.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.277661109	2	1	1	1	1	0.722338891	NA	2	NA	1	NA	0.277661109	1.872005988	0.936002994	2	2.316695279	1.81323143	1.277661109	NA	NA	1	NA	NA	0	4	NA	1	1	1.09E-24	1	5.44E-15	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	33053009	G	A	-	-	-	-	-	-	23	0	0	33	10	30.3	34	10	29.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.7646161	6	2	3	2	3	0.2353839	1	3	NA	2	NA	0.7646161	NA	2.047259516	1.023629758	2	3.754947368	1.251649123	3	NA	NA	0	NA	NA	1	4	NA	1	1	8.14E-16	1	1.15E-15	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	33133174	G	T	CSTF3	CCDS7883.1	r.?	-	-	intronic	43	0	0	32	8	25	39	11	28.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.248003992	1.248003992	1	2.755684211	1.377842105	2	NA	NA	1	NA	NA	1	4	NA	1	1	3.69E-12	1	7.20E-17	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	33135743	T	C	-	-	-	-	-	-	42	0	0	71	11	15.5	41	3	7.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	1.238762475	1.238762475	1	0.932350877	0.932350877	1	NA	NA	1	NA	NA	1	4	NA	1	1	9.49E-14	1	0.001155993	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	33141148	T	G	-	-	-	-	-	-	48	0	0	24	10	41.7	29	4	13.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1	2.620991218	1	2	0	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.247670659	1.247670659	1	1.296223104	1.296223104	1	NA	NA	0	NA	NA	0	4	NA	1	1	1.80E-17	1	0.0000134	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	33167850	A	T	LTBP1	CCDS33177.1	r.?	-	-	upstream	35	0	0	50	4	8	44	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	0.639361277	0.639361277	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.000119787	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	33176490	C	T	CSTF3	CCDS7883.1	r.?	-	-	intronic	24	0	0	44	8	18.2	28	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.908546906	0.908546906	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	5.90E-11	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	195476357	G	T	-	-	-	-	-	-	40	0	0	60	23	38.3	48	26	54.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.294942116	1.147471058	2	5.838385965	2.919192982	2	NA	NA	1	NA	NA	1	4	NA	1	1	2.33E-37	1	3.67E-47	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	140289539	C	T	NAA15	CCDS43270.1	r.?	-	-	intronic	40	0	0	43	13	30.2	34	6	17.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.277661109	2	1	1	1	1	0.722338891	NA	2	NA	1	NA	0.277661109	1.507588822	1.507588822	1	1.592728004	1.592728004	1	NA	NA	1	NA	NA	0	4	NA	1	1	3.88E-20	1	1.86E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	33285668	G	A	DMD	ENST00000288447	r.?	-	-	intronic	49	0	0	51	9	17.6	39	12	30.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7	4.32434803	4	2	3	2	1	0.67565197	NA	3	NA	2	NA	0.32434803	1.58259481	1.58259481	1	3.417653579	1.470370846	2.32434803	NA	NA	1	NA	NA	0	4	NA	1	1	4.92E-12	1	8.43E-19	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	33286725	C	A	-	-	-	-	-	-	35	0	0	34	7	20.6	19	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.028355289	1.028355289	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	3.73E-10	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	33287699	G	A	-	-	-	-	-	-	43	0	0	29	4	13.8	32	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.688898204	0.688898204	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.0000134	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	22	33326116	C	A	SYN3	CCDS13908.1	r.?	-	-	intronic	45	0	0	29	8	27.6	19	2	10.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.292921926	5	3	4	0	1	0.707078074	1	3	NA	1	NA	0.292921926	NA	1.458642859	1.458642859	1	1.236052632	1.236052632	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.53E-12	1	0.004039874	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	149470489	G	A	-	-	-	-	-	-	60	0	0	49	25	51	26	6	23.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.854484501	2.277661109	2	1	0	1	0.145515499	0.722338891	2	2	1	1	0.854484501	0.277661109	2.471715239	1.23585762	2	2.090455506	1.636158048	1.277661109	NA	NA	0	NA	NA	0	4	NA	1	1	1.68E-44	1	3.30E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	33380785	A	G	HIPK3	CCDS7884.1	r.?	-	-	downstream	38	0	0	34	4	11.8	36	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.589057884	0.589057884	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.0000257	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	33424260	G	C	BBS9	CCDS43566.1	r.?	-	-	intronic	44	0	0	79	6	7.6	37	2	5.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	10.19837984	8.289880778	8	6	2	2	0.801620163	0.710119222	8	6	3	3	0.198379837	0.289880778	0.926470081	0.926470081	1	0.813337773	0.813337773	1	NA	NA	1	NA	NA	0	4	NA	1	1	0.00000318	1	0.014826063	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	33432093	C	T	RNF19B	CCDS372.2	r.?	-	-	upstream	28	0	0	35	6	17.1	32	2	6.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	0.853634731	0.853634731	1	0.729859649	0.729859649	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.24E-08	1	0.011224977	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	33458755	G	A	-	-	-	-	-	-	40	0	0	38	18	47.4	30	8	26.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	2.366215569	1.183107784	2	2.609105263	1.304552632	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.16E-31	1	2.07E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	33474319	T	C	NPAS3	CCDS9645.1	r.?	-	-	intronic	56	0	0	41	23	56.1	49	10	20.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.239520958	1.119760479	2	1.789473684	0.894736842	2	NA	NA	1	NA	NA	1	4	NA	1	1	2.21E-42	1	6.72E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	33509544	C	A	-	-	-	-	-	-	24	0	0	46	13	28.3	17	1	5.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.499724906	5.626372055	2	3	2	2	0.500275094	0.373627945	3	3	2	3	0.499724906	0.626372055	1.837162667	0.918581334	2	0.731499811	0.731499811	1	NA	NA	0	NA	NA	0	4	NA	1	1	1.07E-19	1	0.081683532	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	33554884	T	C	NRP1	CCDS7177.1	r.?	-	-	intronic	38	0	0	32	22	68.8	23	4	17.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.746506986	1.373253493	2	1.526315789	1.526315789	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.47E-43	1	0.00000513	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	150636809	C	T	-	-	-	-	-	-	29	0	0	43	6	14	27	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	2.854484501	2.277661109	2	1	0	1	0.145515499	0.722338891	2	2	1	1	0.854484501	0.277661109	0.678510066	0.678510066	1	0	NA	0	NA	NA	0	NA	NA	0	NA	NA	1	1	8.13E-08	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	152371688	C	A	FAM160A1	CCDS47146.1	r.?	-	-	intronic	47	0	0	40	7	17.5	26	4	15.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.854484501	2.277661109	2	1	0	1	0.145515499	0.722338891	2	2	1	1	0.854484501	0.277661109	0.848137582	0.848137582	1	1.393637004	1.393637004	1	NA	NA	0	NA	NA	0	4	NA	1	1	1.26E-09	1	0.00000856	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	163782927	A	T	-	-	-	-	-	-	57	0	0	47	26	55.3	26	2	7.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.854484501	2.277661109	2	1	0	1	0.145515499	0.722338891	2	2	1	1	0.854484501	0.277661109	2.680114759	1.34005738	2	0.696818502	0.696818502	1	NA	NA	0	NA	NA	0	4	NA	1	1	1.69E-47	1	0.007502227	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	33729754	G	T	-	-	-	-	-	-	56	0	0	85	5	5.9	46	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	6	4.32434803	5	2	1	2	1	0.67565197	NA	3	NA	2	NA	0.32434803	0.471528942	0.471528942	1	0	NA	0	NA	NA	0	NA	NA	0	NA	NA	1	1	0.0000735	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	33735843	G	A	ADAMTS12	ENST00000504830	r.?	-	-	intronic	37	0	0	26	15	57.7	19	5	26.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.303393214	1.151696607	2	2.307017544	1.153508772	2	NA	NA	1	NA	NA	1	4	NA	1	1	2.24E-28	1	3.43E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	167497343	G	T	-	-	-	-	-	-	53	0	0	24	6	25	26	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	2.854484501	2.277661109	2	1	0	1	0.145515499	0.722338891	2	2	1	1	0.854484501	0.277661109	1.211625117	1.211625117	1	0	NA	0	NA	NA	0	NA	NA	0	NA	NA	1	1	1.95E-09	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	33876508	C	T	FAM83C	CCDS13251.1	r.?	-	-	intronic	19	0	0	22	6	27.3	10	3	30	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	4.362325493	2	2	1	2	1	0.637674507	NA	3	NA	2	NA	0.362325493	1.362820359	1.362820359	1	3.340276595	1.413978135	2.362325493	NA	NA	0	NA	NA	0	4	NA	1	1	1.09E-09	1	0.0000146	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	33891733	G	A	-	-	-	-	-	-	40	0	0	73	15	20.5	34	6	17.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	10.19837984	8.289880778	8	6	2	2	0.801620163	0.710119222	8	6	3	3	0.198379837	0.289880778	2.49903114	0.891994987	2.801620163	2.650878666	0.978140978	2.710119222	NA	NA	1	NA	NA	0	4	NA	1	1	3.38E-20	1	1.86E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	33903821	G	T	-	-	-	-	-	-	52	0	0	22	9	40.9	27	3	11.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.632734531	1.632734531	1	0.973684211	0.973684211	1	NA	NA	1	NA	NA	1	4	NA	1	1	9.16E-16	1	0.000334187	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	33932853	T	G	-	-	-	-	-	-	49	0	0	107	31	29	41	5	12.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	10.19837984	8.289880778	8	6	2	2	0.801620163	0.710119222	8	6	3	3	0.198379837	0.289880778	3.535214783	0.929923199	3.801620163	1.837540893	1.837540893	1	NA	NA	1	NA	NA	0	4	NA	1	1	2.55E-45	1	0.00000202	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	33934556	G	A	-	-	-	-	-	-	44	0	0	77	6	7.8	42	1	2.4	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	6	4.32434803	5	2	1	2	1	0.67565197	NA	3	NA	2	NA	0.32434803	0.623377246	0.623377246	1	0.266310669	NA	0	NA	NA	0	NA	NA	0	NA	NA	1	1	0.00000273	1	0.189842622	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	33956270	G	C	-	-	-	-	-	-	20	0	0	67	23	34.3	15	1	6.7	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	8.350310876	7	5	4	3	3	0.649689124	1	6	NA	3	NA	0.350310876	NA	3.547418107	1.05883252	3.350310876	0.922719298	NA	0	NA	NA	0	NA	NA	0	NA	NA	1	1	5.12E-36	1	0.072431031	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	167918580	T	C	SPOCK3	CCDS34095.1	r.?	-	-	intronic	60	0	0	31	6	19.4	22	2	9.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.854484501	2.277661109	2	1	0	1	0.145515499	0.722338891	2	2	1	1	0.854484501	0.277661109	0.940221091	0.940221091	1	0.823512775	0.823512775	1	NA	NA	0	NA	NA	0	4	NA	1	1	1.03E-08	1	0.005403392	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	34134071	C	G	-	-	-	-	-	-	37	0	0	49	19	38.8	29	3	10.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5	5	3	3	2	2	1	1	NA	NA	NA	NA	NA	NA	2.712902196	0.904300732	3	1.212508772	1.212508772	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.12E-31	1	0.000414371	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	34155004	G	A	-	-	-	-	-	-	43	0	0	35	5	14.3	32	3	9.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5	5	3	3	2	2	1	1	NA	NA	NA	NA	NA	NA	0.999858283	0.999858283	1	1.106561404	1.106561404	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.000000895	1	0.000556213	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	34157083	T	C	-	-	-	-	-	-	50	0	0	50	8	16	34	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	6.241955165	4.32434803	4	2	2	2	0.758044835	0.67565197	4	3	3	2	0.241955165	0.32434803	1.317435381	1.317435381	1	0	NA	0	NA	NA	0	NA	NA	0	NA	NA	1	1	1.74E-10	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	34158569	C	G	BMPER	CCDS5442.1	r.?	-	-	intronic	42	0	0	62	6	9.7	40	2	5	0	0	NA	0	0	NA	1	0	0	1	TRUE	FALSE	10.19837984	8.289880778	8	6	2	2	0.801620163	0.710119222	8	6	3	3	0.198379837	0.289880778	1.182468393	1.182468393	1	0.75309053	0.75309053	1	NA	NA	1	0	NA	0	4	NA	1	1	0.000000756	1	0.017193422	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	34164567	C	A	-	-	-	-	-	-	52	0	0	43	7	16.3	20	2	10	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.813698603	0.813698603	1	0.977192982	0.977192982	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.15E-09	1	0.004473894	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	34166774	C	T	CSMD2	CCDS380.1	r.?	-	-	intronic	36	0	0	39	9	23.1	31	1	3.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.153155689	1.153155689	1	0.376701754	0.376701754	1	NA	NA	0	NA	NA	1	4	NA	1	1	3.62E-13	1	0.143917729	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	34196154	G	A	-	-	-	-	-	-	22	0	0	29	10	34.5	29	5	17.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	4.362325493	2	2	1	2	1	0.637674507	NA	3	NA	2	NA	0.362325493	1.722245509	0.861122754	2	1.915091915	1.915091915	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.79E-16	1	0.000000336	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	171310179	C	A	-	-	-	-	-	-	33	0	0	36	19	52.8	36	5	13.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.854484501	2.277661109	2	1	0	1	0.145515499	0.722338891	2	2	1	1	0.854484501	0.277661109	2.558952248	1.279476124	2	1.25789314	1.25789314	1	NA	NA	0	NA	NA	0	4	NA	1	1	1.51E-34	1	0.00000104	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	174125610	A	T	GALNT7	CCDS3815.1	r.?	-	-	intronic	46	0	0	40	5	12.5	33	4	12.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.854484501	2.277661109	2	1	0	1	0.145515499	0.722338891	2	2	1	1	0.854484501	0.277661109	0.605812559	0.605812559	1	1.095000503	1.095000503	1	NA	NA	0	NA	NA	0	4	NA	1	1	0.00000178	1	0.0000228	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	34348157	G	A	NUDT2	CCDS6552.1	r.?	-	-	downstream	39	0	0	63	20	31.7	39	6	15.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.422406675	3.327893332	2	3	0	0	0.577593325	0.672106668	3	3	0	1	0.422406675	0.327893332	1.399371978	1.399371978	1	1.555372766	1.555372766	1	NA	NA	0	NA	NA	0	4	NA	1	1	1.05E-30	1	4.43E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	34357348	A	G	-	-	-	-	-	-	54	0	0	52	18	34.6	37	2	5.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6.241955165	4.32434803	4	2	2	2	0.758044835	0.67565197	4	3	3	2	0.241955165	0.32434803	2.848954012	1.032961457	2.758044835	0.599199004	0.599199004	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.39E-28	1	0.014826063	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	34363112	G	T	-	-	-	-	-	-	36	0	0	29	13	44.8	28	7	25	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.661749236	3	2	2	0	1	0.338250764	1	2	NA	1	NA	0.661749236	NA	2.084886811	1.042443406	2	2.442982456	1.221491228	2	NA	NA	0	NA	NA	1	4	NA	1	1	7.69E-23	1	8.44E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	34366736	G	A	-	-	-	-	-	-	40	0	0	74	10	13.5	35	2	5.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	1.078922156	1.078922156	1	0.728	0.728	1	NA	NA	1	NA	NA	1	4	NA	1	1	5.24E-12	1	0.013332991	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	34390045	G	A	PGBD4	CCDS10033.1	r.?	-	-	upstream	40	0	0	37	12	32.4	28	3	10.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.598654474	2	1	1	1	1	0.401345526	NA	2	NA	1	NA	0.598654474	1.617413174	0.808706587	2	1.00265252	1.00265252	1	NA	NA	1	NA	NA	0	4	NA	1	1	4.03E-19	1	0.000372895	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	34393240	C	T	-	-	-	-	-	-	47	0	0	47	21	44.7	43	10	23.3	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	NA	4	NA	2	NA	2	NA	1	NA	NA	NA	NA	NA	NA	NA	NA	1	2.509859649	1.254929825	2	NA	NA	1	NA	NA	1	NA	NA	1	1	5.29E-36	1	1.61E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	34452367	T	C	PARD3	CCDS7178.1	r.?	-	-	intronic	48	0	0	46	18	39.1	36	2	5.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.297222263	4	2	2	2	2	0.702777737	1	3	NA	2	NA	0.297222263	NA	2.459092148	1.07046331	2.297222263	0.60322807	0.60322807	1	NA	NA	1	NA	NA	0	4	NA	1	1	9.41E-30	1	0.014070883	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	34455144	G	C	-	-	-	-	-	-	48	0	0	34	6	17.6	33	2	6.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.499724906	5.626372055	2	3	2	2	0.500275094	0.373627945	3	3	2	3	0.499724906	0.626372055	1.142546394	1.142546394	1	0.756296415	0.756296415	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.86E-08	1	0.011909843	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	34460584	T	G	-	-	-	-	-	-	38	0	0	54	30	55.6	42	9	21.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6.241955165	4.32434803	4	2	2	2	0.758044835	0.67565197	4	3	3	2	0.241955165	0.32434803	4.57808795	1.144521988	4	2.374603461	1.021621302	2.32434803	NA	NA	1	NA	NA	0	4	NA	1	1	1.16E-54	1	7.51E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	34483022	C	T	EGLN3	ENST00000487915	r.?	-	-	intronic	47	0	0	36	12	33.3	36	6	16.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.329341317	1.329341317	1	1.464912281	1.464912281	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.73E-19	1	2.68E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	174392390	T	A	-	-	-	-	-	-	55	0	0	41	6	14.6	31	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	2.854484501	2.277661109	2	1	0	1	0.145515499	0.722338891	2	2	1	1	0.854484501	0.277661109	0.707589069	0.707589069	1	0	NA	0	NA	NA	0	NA	NA	0	NA	NA	1	1	6.05E-08	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	34528521	T	C	-	-	-	-	-	-	55	0	0	101	25	24.8	57	10	17.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	10.19837984	8.289880778	8	6	2	2	0.801620163	0.710119222	8	6	3	3	0.198379837	0.289880778	3.02321816	1.007739387	3	2.635816855	0.972583359	2.710119222	NA	NA	1	NA	NA	0	4	NA	1	1	6.66E-35	1	3.40E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	34535729	C	T	-	-	-	-	-	-	37	0	0	44	5	11.4	33	4	12.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.422406675	3.327893332	2	3	0	0	0.577593325	0.672106668	3	3	0	1	0.422406675	0.327893332	0.503244181	0.503244181	1	1.222078602	1.222078602	1	NA	NA	0	NA	NA	0	4	NA	1	1	0.00000288	1	0.0000228	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	34567216	G	A	CSMD2	CCDS380.1	r.?	-	-	intronic	38	0	0	47	5	10.6	22	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	0.529153693	0.529153693	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	0.00000402	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	34583830	G	A	C6orf106	CCDS4796.1	r.?	-	-	intronic	51	0	0	59	14	23.7	43	9	20.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	8.350310876	7	5	4	3	3	0.649689124	1	6	NA	3	NA	0.350310876	NA	2.451131462	1.042896702	2.350310876	2.878333333	0.959444444	3	NA	NA	0	NA	NA	0	4	NA	1	1	6.58E-20	1	9.45E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	34614339	A	T	-	-	-	-	-	-	50	0	0	53	5	9.4	34	5	14.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6.241955165	4.32434803	4	2	2	2	0.758044835	0.67565197	4	3	3	2	0.241955165	0.32434803	0.773993287	0.773993287	1	1.631152845	1.631152845	1	NA	NA	1	NA	NA	0	4	NA	1	1	0.00000734	1	0.000000771	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	175443410	C	A	HPGD	CCDS3821.1	r.?	-	-	intronic	14	0	0	38	8	21.1	9	1	11.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.854484501	2.277661109	2	1	0	1	0.145515499	0.722338891	2	2	1	1	0.854484501	0.277661109	1.022611599	1.022611599	1	1.004504594	1.004504594	1	NA	NA	0	NA	NA	0	4	NA	1	1	1.67E-11	1	0.044110422	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	34634221	C	G	-	-	-	-	-	-	51	0	0	69	28	40.6	45	16	35.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	3.244758483	1.081586161	3	4.546807018	1.136701754	4	NA	NA	1	NA	NA	1	4	NA	1	1	5.13E-46	1	8.61E-26	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	34634399	A	T	-	-	-	-	-	-	66	0	0	51	29	56.9	31	9	29	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	4.547457086	1.136864271	4	3.703859649	0.925964912	4	NA	NA	1	NA	NA	1	4	NA	1	1	2.61E-53	1	3.57E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	21	34635486	A	G	IFNAR2	CCDS13621.1	r.1555a>g	c.1229A>G	p.D410G	missense	35	0	0	65	25	38.5	38	10	26.3	174	0	0	96	20	20.8	96	19	19.8	2.69E-19	TRUE	TRUE	4.559012765	5	2	3	2	2	0.440987235	1	3	NA	2	NA	0.559012765	NA	2.522146062	0.985593389	2.559012765	3.096017544	1.032005848	3	1.362613976	1.362613976	1	2.330842105	1.165421053	2	4	3	1	1	1.60E-40	1.43E-26	4.06E-15	7.42E-25	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	2	34637100	G	T	-	-	-	-	-	-	44	0	0	51	12	23.5	43	3	7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	1.878123752	0.939061876	2	0.894035088	0.894035088	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.24E-17	1	0.001328364	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	34640288	C	T	-	-	-	-	-	-	50	0	0	53	6	11.3	29	1	3.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	0.903097804	0.903097804	1	0.434245614	0.434245614	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.000000293	1	0.135292269	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	34690065	A	T	-	-	-	-	-	-	63	0	0	53	4	7.5	33	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5	5	3	3	2	2	1	1	NA	NA	NA	NA	NA	NA	0.524401198	0.524401198	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.000150502	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	34716951	A	T	-	-	-	-	-	-	52	0	0	44	13	29.5	35	4	11.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.472644711	1.472644711	1	1.114	1.114	1	NA	NA	1	NA	NA	1	4	NA	1	1	5.49E-20	1	0.0000289	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	34747548	G	A	-	-	-	-	-	-	45	0	0	66	29	43.9	41	15	36.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6.241955165	4.32434803	4	2	2	2	0.758044835	0.67565197	4	3	3	2	0.241955165	0.32434803	3.614713327	0.961860086	3.758044835	4.061237695	1.747258862	2.32434803	NA	NA	0	NA	NA	0	4	NA	1	1	6.96E-49	1	1.71E-24	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	179054003	T	C	-	-	-	-	-	-	58	0	0	34	5	14.7	34	4	11.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.854484501	2.277661109	2	1	0	1	0.145515499	0.722338891	2	2	1	1	0.854484501	0.277661109	0.712435569	0.712435569	1	1.06785173	1.06785173	1	NA	NA	0	NA	NA	0	4	NA	1	1	0.000000771	1	0.0000257	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	17	34829926	A	C	-	-	-	-	-	-	51	0	0	35	4	11.4	35	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	3.601202326	2	3	0	0	1	0.398797674	NA	3	NA	1	NA	0.601202326	0.45508982	0.45508982	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	0.0000289	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	179262082	G	T	-	-	-	-	-	-	52	0	0	43	7	16.3	31	3	9.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.854484501	2.277661109	2	1	0	1	0.145515499	0.722338891	2	2	1	1	0.854484501	0.277661109	0.789979576	0.789979576	1	0.877810321	0.877810321	1	NA	NA	0	NA	NA	0	4	NA	1	1	2.15E-09	1	0.000505952	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	181887882	G	T	-	-	-	-	-	-	71	0	0	41	4	9.8	45	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	2.854484501	2.277661109	2	1	0	1	0.145515499	0.722338891	2	2	1	1	0.854484501	0.277661109	0.474957046	0.474957046	1	0	NA	0	NA	NA	0	NA	NA	0	NA	NA	1	1	0.0000546	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	34847098	G	T	-	-	-	-	-	-	61	0	0	85	6	7.1	43	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	0.567433134	0.567433134	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.00000487	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	34871112	G	A	-	-	-	-	-	-	70	0	0	21	8	38.1	33	4	12.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1	2.620991218	1	2	0	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.139958084	1.139958084	1	1.136543446	1.136543446	1	NA	NA	0	NA	NA	0	4	NA	1	1	7.50E-14	1	0.0000228	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	22	34872578	T	G	-	-	-	-	-	-	57	0	0	32	5	15.6	31	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.292921926	5	3	4	0	1	0.707078074	1	3	NA	1	NA	0.292921926	NA	0.824450311	0.824450311	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	0.000000562	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	34885296	G	A	-	-	-	-	-	-	25	0	0	41	8	19.5	20	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	0.973443114	0.973443114	1	0	0	1	NA	NA	0	NA	NA	1	4	NA	1	1	3.22E-11	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	34915412	G	A	-	-	-	-	-	-	61	0	0	35	5	14.3	36	2	5.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.661749236	3	2	2	0	1	0.338250764	1	2	NA	1	NA	0.661749236	NA	0.665488424	0.665488424	1	0.54722807	0.54722807	1	NA	NA	0	NA	NA	1	4	NA	1	1	0.000000895	1	0.014070883	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	34923912	A	G	CELF4	CCDS32818.1	r.?	-	-	intronic	19	0	0	24	9	37.5	31	8	25.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.497005988	1.497005988	1	2.263157895	1.131578947	2	NA	NA	1	NA	NA	1	4	NA	1	1	2.39E-15	1	2.78E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	34932215	C	T	ANKS1A	CCDS4798.1	r.?	-	-	intronic	39	0	0	69	7	10.1	44	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	8.350310876	7	5	4	3	3	0.649689124	1	6	NA	3	NA	0.350310876	NA	1.044575011	1.044575011	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	6.43E-08	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	34934441	G	A	-	-	-	-	-	-	41	0	0	60	5	8.3	34	2	5.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6.241955165	4.32434803	4	2	2	2	0.758044835	0.67565197	4	3	3	2	0.241955165	0.32434803	0.683419604	0.683419604	1	0.654680393	0.654680393	1	NA	NA	1	NA	NA	0	4	NA	1	1	0.0000136	1	0.012612579	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	34955150	G	A	-	-	-	-	-	-	29	0	0	45	21	46.7	24	4	16.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.661749236	3	2	2	0	1	0.338250764	1	2	NA	1	NA	0.661749236	NA	2.17330835	1.086654175	2	1.631912281	1.631912281	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.60E-36	1	0.00000613	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	34981313	A	C	-	-	-	-	-	-	58	0	0	39	17	43.6	44	10	22.7	114	0	0	333	132	39.6	383	66	17.2	6.44E-59	TRUE	TRUE	2.661749236	3	2	2	0	1	0.338250764	1	2	NA	1	NA	0.661749236	NA	2.029041629	1.014520814	2	2.21822807	1.109114035	2	1.842891021	0.92144551	2	1.68077193	0.840385965	2	4	3	1	1	3.51E-29	3.94E-209	2.08E-14	4.20E-78	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	2	34988760	G	A	-	-	-	-	-	-	56	0	0	66	24	36.4	34	9	26.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	2.909093812	0.969697937	3	3.384561404	1.128187135	3	NA	NA	1	NA	NA	1	4	NA	1	1	3.04E-38	1	9.15E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	34996627	C	T	DPY19L1	CCDS43567.1	r.?	-	-	intronic	27	0	0	109	13	11.9	51	11	21.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	10.19837984	8.289880778	8	6	2	2	0.801620163	0.710119222	8	6	3	3	0.198379837	0.289880778	1.450657101	1.450657101	1	3.25335109	1.084450363	3	NA	NA	1	NA	NA	0	4	NA	1	1	1.83E-14	1	1.94E-15	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	35001382	G	T	-	-	-	-	-	-	50	0	0	60	15	25	37	8	21.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6.241955165	4.32434803	4	2	2	2	0.758044835	0.67565197	4	3	3	2	0.241955165	0.32434803	2.058492783	1.029246392	2	2.396796017	1.031169165	2.32434803	NA	NA	1	NA	NA	0	4	NA	1	1	1.31E-21	1	1.33E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	35010314	G	A	CELF4	CCDS32818.1	r.?	-	-	intronic	32	0	0	32	5	15.6	35	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.622754491	0.622754491	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.000000562	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	35053279	A	G	-	-	-	-	-	-	50	0	0	72	7	9.7	43	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	6.241955165	4.32434803	4	2	2	2	0.758044835	0.67565197	4	3	3	2	0.241955165	0.32434803	0.7986952	0.7986952	1	0	NA	0	NA	NA	0	NA	NA	0	NA	NA	1	1	8.66E-08	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	35070381	G	A	AC087457.1	ENST00000503496	r.?	-	-	intronic	15	0	0	46	13	28.3	23	3	13	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.598654474	2	1	1	1	1	0.401345526	NA	2	NA	1	NA	0.598654474	1.412740519	1.412740519	1	1.218175959	1.218175959	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.07E-19	1	0.000205387	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	185828829	C	A	-	-	-	-	-	-	36	0	0	34	5	14.7	31	2	6.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.854484501	2.277661109	2	1	0	1	0.145515499	0.722338891	2	2	1	1	0.854484501	0.277661109	0.712435569	0.712435569	1	0.588223411	0.588223411	1	NA	NA	0	NA	NA	0	4	NA	1	1	0.000000771	1	0.010558179	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	35096093	G	A	-	-	-	-	-	-	55	0	0	32	13	40.6	31	5	16.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	2.026758483	1.013379242	2	1.895280702	1.895280702	1	NA	NA	0	NA	NA	1	4	NA	1	1	3.88E-22	1	0.000000476	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	35115665	G	T	-	-	-	-	-	-	43	0	0	38	16	42.1	23	2	8.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.661749236	3	2	2	0	1	0.338250764	1	2	NA	1	NA	0.661749236	NA	1.959235151	0.979617575	2	0.850157895	0.850157895	1	NA	NA	0	NA	NA	1	4	NA	1	1	3.06E-27	1	0.00589844	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	35120712	G	T	-	-	-	-	-	-	59	0	0	86	19	22.1	49	9	18.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	10.19837984	8.289880778	8	6	2	2	0.801620163	0.710119222	8	6	3	3	0.198379837	0.289880778	2.694077473	0.961614107	2.801620163	2.771373151	1.022601931	2.710119222	NA	NA	0	NA	NA	0	4	NA	1	1	7.57E-26	1	3.35E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	35121290	G	C	-	-	-	-	-	-	45	0	0	83	19	22.9	45	5	11.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	10.19837984	8.289880778	8	6	2	2	0.801620163	0.710119222	8	6	3	3	0.198379837	0.289880778	2.791600639	0.996423668	2.801620163	1.671860977	1.671860977	1	NA	NA	1	NA	NA	0	4	NA	1	1	3.60E-26	1	0.00000323	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	210430417	C	T	MAP2	CCDS33369.1	r.?	-	-	intronic	38	0	0	48	16	33.3	32	4	12.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.995341317	0.997670659	2	1.346491228	1.346491228	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.96E-25	1	0.0000201	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	187801350	T	C	-	-	-	-	-	-	30	0	0	52	18	34.6	25	6	24	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	2.277661109	2	1	2	1	1	0.722338891	NA	2	NA	1	NA	0.277661109	2.073237525	1.036618762	2	2.171901824	1.699904465	1.277661109	NA	NA	1	NA	NA	0	4	NA	1	1	1.39E-28	1	2.55E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	21	35157223	A	G	ITSN1	CCDS33545.1	r.?	-	-	intronic	56	0	0	46	17	37	46	14	30.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.559012765	5	2	3	2	2	0.440987235	1	3	NA	2	NA	0.559012765	NA	2.423880631	0.947193646	2.559012765	3.578666667	1.192888889	3	NA	NA	0	NA	NA	1	4	NA	1	1	1.16E-27	1	1.26E-21	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	35165100	T	G	-	-	-	-	-	-	51	0	0	122	60	49.2	63	19	30.2	0	0	NA	2	0	0	0	0	NA	1	TRUE	FALSE	8.350310876	7	5	4	3	3	0.649689124	1	6	NA	3	NA	0.350310876	NA	5.088424807	1.017684961	5	4.159122807	1.039780702	4	0	0	1	NA	NA	0	4	NA	1	1	2.41E-103	1	9.48E-29	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	22	35192666	G	T	-	-	-	-	-	-	62	0	0	38	4	10.5	33	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.292921926	5	3	4	0	1	0.707078074	1	3	NA	1	NA	0.292921926	NA	0.554918479	0.554918479	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	0.0000403	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	35255155	C	T	-	-	-	-	-	-	47	0	0	39	10	25.6	25	4	16	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.021956088	1.021956088	1	1.403508772	1.403508772	1	NA	NA	1	NA	NA	1	4	NA	1	1	5.44E-15	1	0.00000727	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	21	35261520	G	C	ITSN1	CCDS33545.1	r.6370g>c	c.?	p.?	3'UTR variant	32	0	0	51	6	11.8	38	3	7.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.559012765	5	2	3	2	2	0.440987235	1	3	NA	2	NA	0.559012765	NA	0.77302139	0.77302139	1	0.929982456	0.929982456	1	NA	NA	0	NA	NA	1	4	NA	1	1	0.000000232	1	0.000925091	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	35303608	A	T	-	-	-	-	-	-	35	0	0	41	24	58.5	27	6	22.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.335329341	1.167664671	2	1.947368421	1.947368421	1	NA	NA	1	NA	NA	1	4	NA	1	1	8.33E-45	1	4.23E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	35311364	A	T	-	-	-	-	-	-	15	0	0	44	9	20.5	20	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.023363273	1.023363273	1	0	0	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.18E-12	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	35320768	T	C	PPARD	CCDS4803.1	r.?	-	-	intronic	60	0	0	130	40	30.8	55	14	25.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	8.350310876	7	5	4	3	3	0.649689124	1	6	NA	3	NA	0.350310876	NA	3.185436668	0.950788385	3.350310876	3.511842105	0.877960526	4	NA	NA	1	NA	NA	0	4	NA	1	1	3.12E-59	1	2.19E-20	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	35326672	A	T	PPARD	CCDS4803.1	r.?	-	-	intronic	33	0	0	121	45	37.2	66	24	36.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	8.350310876	7	5	4	3	3	0.649689124	1	6	NA	3	NA	0.350310876	NA	3.847345586	0.961836396	4	5.012982456	1.253245614	4	NA	NA	1	NA	NA	0	4	NA	1	1	7.03E-71	1	3.04E-38	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	35339485	C	T	CUL2	CCDS7179.1	r.?	-	-	intronic	44	0	0	41	7	17.1	40	2	5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.297222263	4	2	2	2	2	0.702777737	1	3	NA	2	NA	0.297222263	NA	1.075459738	1.075459738	1	0.538596491	0.538596491	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.51E-09	1	0.017193422	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	189159421	A	C	-	-	-	-	-	-	50	0	0	39	13	33.3	28	5	17.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	2.277661109	2	1	2	1	1	0.722338891	NA	2	NA	1	NA	0.277661109	1.995341317	0.997670659	2	1.619876777	1.619876777	1	NA	NA	1	NA	NA	0	4	NA	1	1	8.79E-21	1	0.000000279	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	3491699	G	T	-	-	-	-	-	-	40	0	0	26	14	53.8	23	4	17.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.147704591	1.073852295	2	1.526315789	1.526315789	1	NA	NA	1	NA	NA	1	4	NA	1	1	5.57E-26	1	0.00000513	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	35397764	G	T	-	-	-	-	-	-	61	0	0	30	4	13.3	25	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.530938124	0.530938124	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.0000154	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	35413888	T	A	ENSG00000235977	ENST00000424925	r.1259u>a	c.?	p.?	5'UTR variant	43	0	0	65	8	12.3	39	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7.252817795	8.289880778	5	6	2	2	0.747182205	0.710119222	5	6	3	3	0.252817795	0.289880778	1.137114553	1.137114553	1	0	0	1	NA	NA	0	NA	NA	0	3	NA	1	1	1.53E-09	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	16088647	G	T	Mar-11	CCDS47192.1	r.?	-	-	intronic	50	0	0	32	5	15.6	36	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.622754491	0.622754491	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.000000562	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	21	35434770	T	C	-	-	-	-	-	-	50	0	0	68	19	27.9	41	5	12.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.559012765	5	2	3	2	2	0.440987235	1	3	NA	2	NA	0.559012765	NA	1.827737017	0.913868508	2	1.436175439	1.436175439	1	NA	NA	0	NA	NA	1	4	NA	1	1	5.06E-28	1	0.00000202	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	35477610	C	T	-	-	-	-	-	-	62	0	0	67	21	31.3	44	12	27.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	2.501500998	0.833833666	3	3.486736842	0.871684211	4	NA	NA	1	NA	NA	1	4	NA	1	1	4.96E-32	1	4.44E-18	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	35531818	G	A	HPN	CCDS32993.1	r.?	-	-	intronic	15	0	0	26	15	57.7	8	1	12.5	173	0	0	36	7	19.4	39	2	5.1	0.058074659	TRUE	TRUE	4.7646161	6	2	3	2	3	0.2353839	1	3	NA	2	NA	0.7646161	NA	3.898576703	1.410169283	2.7646161	1.596491228	1.596491228	1	1.310786621	1.310786621	1	0.651368421	0.651368421	1	4	3	1	1	2.24E-28	5.74E-10	0.039306956	0.016387522	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	2	35544232	C	G	-	-	-	-	-	-	47	0	0	56	10	17.9	30	9	30	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	1.430570858	1.430570858	1	3.831578947	0.957894737	4	NA	NA	1	NA	NA	1	4	NA	1	1	2.82E-13	1	2.54E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	21	35555882	C	T	-	-	-	-	-	-	57	0	0	54	16	29.6	45	7	15.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.559012765	5	2	3	2	2	0.440987235	1	3	NA	2	NA	0.559012765	NA	1.939104505	0.969552252	2	1.836421053	1.836421053	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.69E-24	1	0.000000003	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	35561645	G	A	-	-	-	-	-	-	53	0	0	41	7	17.1	37	1	2.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5	5	3	3	2	2	1	1	NA	NA	NA	NA	NA	NA	1.195634731	1.195634731	1	0.317842105	0.317842105	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.51E-09	1	0.169281299	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	35572936	T	A	-	-	-	-	-	-	40	0	0	32	14	43.8	33	3	9.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.598654474	2	1	1	1	1	0.401345526	NA	2	NA	1	NA	0.598654474	2.186502994	1.093251497	2	0.852723171	0.852723171	1	NA	NA	1	NA	NA	0	4	NA	1	1	2.65E-24	1	0.000609557	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	35602046	G	T	ENSG00000203404	ENST00000366226	r.199g>u	c.?	p.?	5'UTR variant	22	0	0	23	7	30.4	16	3	18.8	6	0	0	0	0	NA	0	0	NA	1	TRUE	FALSE	4.7646161	6	2	3	2	3	0.2353839	1	3	NA	2	NA	0.7646161	NA	2.054016149	1.027008074	2	2.401122807	2.401122807	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.79E-11	1	0.0000667	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	35627927	G	A	-	-	-	-	-	-	43	0	0	54	6	11.1	27	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.133128081	5	2	3	1	2	0.866871919	1	2	NA	2	NA	0.133128081	NA	0.568890989	0.568890989	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	0.000000329	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	35628060	C	G	-	-	-	-	-	-	45	0	0	28	14	50	37	9	24.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.996007984	0.998003992	2	2.131578947	1.065789474	2	NA	NA	1	NA	NA	1	4	NA	1	1	2.29E-25	1	2.14E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	35630044	G	A	-	-	-	-	-	-	30	0	0	54	23	42.6	34	2	5.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6.241955165	4.32434803	4	2	2	2	0.758044835	0.67565197	4	3	3	2	0.241955165	0.32434803	3.507671703	0.933376758	3.758044835	0.654680393	0.654680393	1	NA	NA	0	NA	NA	0	4	NA	1	1	1.12E-38	1	0.012612579	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	35633217	A	G	KIAA0391	CCDS32063.1	r.?	-	-	intronic	50	0	0	34	7	20.6	27	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.822355289	0.822355289	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	3.73E-10	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	35643787	A	T	-	-	-	-	-	-	65	0	0	32	14	43.8	22	7	31.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.748502994	0.874251497	2	2.789473684	1.394736842	2	NA	NA	1	NA	NA	1	4	NA	1	1	2.65E-24	1	1.25E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	35655492	C	A	FKBP5	CCDS4808.1	r.?	-	-	intronic	34	0	0	92	42	45.7	37	7	18.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	8.350310876	7	5	4	3	3	0.649689124	1	6	NA	3	NA	0.350310876	NA	4.726443368	0.945288674	5	2.602894737	0.867631579	3	NA	NA	1	NA	NA	0	4	NA	1	1	5.18E-71	1	7.05E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	35696253	C	T	TLN1	CCDS35009.1	r.?	-	-	downstream	41	0	0	58	11	19	44	3	6.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.133128081	5	2	3	1	2	0.866871919	1	2	NA	2	NA	0.133128081	NA	0.973777369	0.973777369	1	0.800491228	0.800491228	1	NA	NA	0	NA	NA	1	4	NA	1	1	8.96E-15	1	0.00142027	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	35704832	C	T	C6orf81	CCDS4809.1	r.?	-	-	upstream	13	0	0	107	8	7.5	36	3	8.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	8.350310876	7	5	4	3	3	0.649689124	1	6	NA	3	NA	0.350310876	NA	0.775674513	0.775674513	1	1.143070175	1.143070175	1	NA	NA	1	NA	NA	0	4	NA	1	1	0.000000082	1	0.000788827	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	35713754	G	T	HERPUD2	CCDS5446.1	r.?	-	-	intronic	40	0	0	69	6	8.7	30	1	3.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7.252817795	8.289880778	5	6	2	2	0.747182205	0.710119222	5	6	3	3	0.252817795	0.289880778	0.804300537	0.804300537	1	0.49703975	0.49703975	1	NA	NA	0	NA	NA	1	4	NA	1	1	0.00000143	1	0.139615808	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	35727715	T	C	NBEA	CCDS45026.1	r.?	-	-	intronic	44	0	0	29	16	55.2	28	4	14.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.203592814	1.101796407	2	1.254385965	1.254385965	1	NA	NA	1	NA	NA	1	4	NA	1	1	9.74E-30	1	0.0000116	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	35727947	C	T	CCNY	CCDS7189.1	r.?	-	-	intronic	56	0	0	60	6	10	54	0	0	0	0	NA	2	0	0	0	0	NA	1	TRUE	FALSE	4.297222263	4	2	2	2	2	0.702777737	1	3	NA	2	NA	0.297222263	NA	0.628923823	0.628923823	1	0	0	1	0	0	1	NA	NA	1	3	NA	1	1	0.000000621	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	18254470	C	A	-	-	-	-	-	-	56	0	0	40	5	12.5	37	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.499001996	0.499001996	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.00000178	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	35829722	C	T	CD22	CCDS12457.1	r.?	-	-	intronic	17	0	0	38	9	23.7	21	3	14.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.7646161	6	2	3	2	3	0.2353839	1	3	NA	2	NA	0.7646161	NA	1.6013218	1.6013218	1	1.826385965	1.826385965	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.79E-13	1	0.000155401	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	35840594	G	T	-	-	-	-	-	-	53	0	0	34	5	14.7	25	4	16	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.661749236	3	2	2	0	1	0.338250764	1	2	NA	1	NA	0.661749236	NA	0.684103485	0.684103485	1	1.563508772	1.563508772	1	NA	NA	0	NA	NA	1	4	NA	1	1	0.000000771	1	0.00000727	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	21	35853396	G	A	KCNE1	CCDS13636.1	r.?	-	-	intronic	27	0	0	44	16	36.4	30	10	33.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.559012765	5	2	3	2	2	0.440987235	1	3	NA	2	NA	0.559012765	NA	2.384574459	0.931833749	2.559012765	3.920052632	1.306684211	3	NA	NA	0	NA	NA	1	4	NA	1	1	5.57E-26	1	2.68E-16	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	35856183	C	T	CCNY	CCDS7189.1	r.?	-	-	intronic	48	0	0	59	26	44.1	45	7	15.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.297222263	4	2	2	2	2	0.702777737	1	3	NA	2	NA	0.297222263	NA	2.77355406	1.207351202	2.297222263	1.680421053	1.680421053	1	NA	NA	1	NA	NA	0	4	NA	1	1	5.03E-44	1	0.000000003	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	35866088	G	A	-	-	-	-	-	-	47	0	0	49	19	38.8	35	4	11.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	3.100902196	1.033634065	3	1.456	1.456	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.12E-31	1	0.0000289	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	35882841	G	A	-	-	-	-	-	-	54	0	0	60	5	8.3	49	2	4.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	0.663337325	0.663337325	1	0.523649123	0.523649123	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.0000136	1	0.025168485	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	35924153	C	T	Sep-07	ENST00000435235	r.?	-	-	intronic	42	1	2.4	63	14	22.2	43	8	18.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7.252817795	8.289880778	5	6	2	2	0.747182205	0.710119222	5	6	3	3	0.252817795	0.289880778	2.052353095	1.026176548	2	2.801496772	1.03371717	2.710119222	NA	NA	0	NA	NA	1	4	NA	0.189842622	1	1.81E-19	1	4.85E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	225204910	C	T	-	-	-	-	-	-	43	0	0	33	22	66.7	34	9	26.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.662674651	1.331337325	2	2.324561404	1.162280702	2	NA	NA	1	NA	NA	1	4	NA	1	1	4.38E-43	1	9.15E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	24930805	T	C	-	-	-	-	-	-	45	0	0	30	8	26.7	28	4	14.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.065868263	1.065868263	1	1.254385965	1.254385965	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.07E-12	1	0.0000116	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	36046906	C	T	-	-	-	-	-	-	67	0	0	71	10	14.1	43	5	11.6	1	0	0	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	1.126874251	1.126874251	1	1.48154386	1.48154386	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.42E-12	1	0.00000257	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	26322011	T	A	-	-	-	-	-	-	54	0	0	30	19	63.3	27	8	29.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.526946108	1.263473054	2	2.596491228	1.298245614	2	NA	NA	1	NA	NA	1	4	NA	1	1	9.89E-37	1	7.97E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	36067542	G	A	-	-	-	-	-	-	37	0	0	69	12	17.4	38	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	1.390610778	1.390610778	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	1.65E-15	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	36103536	A	C	RECK	CCDS6597.1	r.?	-	-	intronic	47	0	0	50	6	12	38	5	13.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.133128081	5	2	3	1	2	0.866871919	1	2	NA	2	NA	0.133128081	NA	0.615017286	0.615017286	1	1.553894737	1.553894737	1	NA	NA	0	NA	NA	1	4	NA	1	1	0.000000206	1	0.00000137	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	36125552	C	G	-	-	-	-	-	-	59	0	0	45	13	28.9	26	2	7.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5	5	3	3	2	2	1	1	NA	NA	NA	NA	NA	NA	2.020692615	1.010346307	2	0.906438596	0.906438596	1	NA	NA	1	NA	NA	1	4	NA	1	1	7.68E-20	1	0.007502227	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	36158429	T	C	-	-	-	-	-	-	55	0	0	19	4	21.1	21	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1	2.620991218	1	2	0	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0.631315369	0.631315369	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	0.00000228	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	36173968	A	G	-	-	-	-	-	-	38	0	0	46	16	34.8	31	5	16.1	183	0	0	587	148	25.2	486	62	12.8	3.07E-47	TRUE	TRUE	3	2.598654474	2	1	1	1	1	0.401345526	NA	2	NA	1	NA	0.598654474	1.737221557	0.868610778	2	1.508664072	1.508664072	1	1.257988024	1.257988024	1	1.19943479	1.19943479	1	4	3	1	1	1.31E-25	1.06E-199	0.000000476	5.44E-65	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	5	36062940	G	A	UGT3A2	CCDS3914.1	r.?	-	-	intronic	51	0	0	35	12	34.3	33	2	6.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.369261477	1.369261477	1	0.535087719	0.535087719	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.83E-19	1	0.011909843	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	37366954	G	A	NUP155	CCDS3921.1	r.?	-	-	intronic	20	0	0	30	12	40	29	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.596806387	0.798403194	2	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	1.94E-20	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	36228074	A	G	ENSG00000105663	CCDS46055.1	r.7460a>g	c.7460A>G	p.H2487R	missense	18	0	0	40	14	35	14	5	35.7	234	1	0.4	67	19	28.4	68	8	11.8	4.33E-07	TRUE	TRUE	4.7646161	6	2	3	2	3	0.2353839	1	3	NA	2	NA	0.7646161	NA	2.364821224	0.855388647	2.7646161	4.559578947	1.519859649	3	1.918883507	0.959441754	2	1.507087719	1.507087719	1	4	3	1	0.690542584	1.25E-22	3.67E-28	6.03E-09	2.21E-09	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	5	43923209	C	A	-	-	-	-	-	-	62	0	0	31	7	22.6	28	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.902195609	0.902195609	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	1.85E-10	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	36252937	C	A	GNE	CCDS47965.1	r.?	-	-	intronic	40	0	0	30	7	23.3	32	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.133128081	5	2	3	1	2	0.866871919	1	2	NA	2	NA	0.133128081	NA	1.194158563	1.194158563	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	1.44E-10	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	36260150	A	T	-	-	-	-	-	-	53	0	0	30	11	36.7	38	7	18.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1	2.620991218	1	2	0	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.09806986	1.09806986	1	1.728297472	1.728297472	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.44E-18	1	8.61E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	51622634	C	T	-	-	-	-	-	-	44	0	0	43	15	34.9	43	9	20.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.091213573	1.045606786	2	2.251333333	1.125666667	2	NA	NA	1	NA	NA	1	4	NA	1	1	4.05E-24	1	9.45E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	36295325	A	C	-	-	-	-	-	-	30	0	0	31	5	16.1	36	3	8.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.598654474	2	1	1	1	1	0.401345526	NA	2	NA	1	NA	0.598654474	0.803714571	0.803714571	1	0.777758497	0.777758497	1	NA	NA	1	NA	NA	0	4	NA	1	1	0.000000476	1	0.000788827	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	36324143	G	T	CXorf30	ENST00000378653	r.?	-	-	intronic	56	0	0	52	8	15.4	41	7	17.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6.241955165	4.32434803	4	2	2	2	0.758044835	0.67565197	4	3	3	2	0.241955165	0.32434803	1.268031555	1.268031555	1	1.897463513	1.897463513	1	NA	NA	0	NA	NA	0	4	NA	1	1	2.42E-10	1	1.51E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	36327300	G	T	-	-	-	-	-	-	56	0	0	47	17	36.2	37	6	16.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.297222263	4	2	2	2	2	0.702777737	1	3	NA	2	NA	0.297222263	NA	2.27670424	0.991068333	2.297222263	1.745052632	1.745052632	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.81E-27	1	3.18E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	36339249	C	T	CXorf30	ENST00000378653	r.?	-	-	intronic	59	0	0	60	15	25	44	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	6.241955165	4.32434803	4	2	2	2	0.758044835	0.67565197	4	3	3	2	0.241955165	0.32434803	2.058492783	1.029246392	2	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	1.31E-21	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	36397624	A	G	CXorf30	ENST00000378653	r.2538a>g	c.2538A>G	p.L846L	silent	48	0	0	58	6	10.3	29	0	0	123	0	0	390	45	11.5	236	15	6.4	2.40E-08	FALSE	TRUE	6.241955165	4.32434803	4	2	2	2	0.758044835	0.67565197	4	3	3	2	0.241955165	0.32434803	0.848099027	0.848099027	1	0	NA	0	0.94690668	0.94690668	1	0.710161783	0.710161783	1	NA	3	1	1	0.000000506	1.24E-45	1	2.06E-12	YES	1_1	0_1	somatic	custom.pulldown.HiSeq
PD9852b	4	36401031	T	A	-	-	-	-	-	-	51	0	0	36	9	25	39	1	2.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.661749236	3	2	2	0	1	0.338250764	1	2	NA	1	NA	0.661749236	NA	1.163441301	1.163441301	1	0.254070175	0.254070175	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.63E-13	1	0.177567718	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	58212185	G	T	-	-	-	-	-	-	42	0	0	46	14	30.4	34	9	26.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.821572854	0.910786427	2	2.854561404	1.427280702	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.26E-21	1	9.15E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	36453220	G	A	-	-	-	-	-	-	60	0	0	60	29	48.3	42	10	23.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.661749236	3	2	2	0	1	0.338250764	1	2	NA	1	NA	0.661749236	NA	2.247768593	1.123884297	2	2.325719298	1.162859649	2	NA	NA	0	NA	NA	1	4	NA	1	1	1.83E-50	1	1.24E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	36459546	C	G	-	-	-	-	-	-	44	0	0	52	18	34.6	40	7	17.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.598654474	2	1	1	1	1	0.401345526	NA	2	NA	1	NA	0.598654474	1.727237525	0.863618762	2	1.639852252	1.639852252	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.39E-28	1	1.26E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	36472621	G	A	-	-	-	-	-	-	43	0	0	31	10	32.3	23	4	17.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.7646161	6	2	3	2	3	0.2353839	1	3	NA	2	NA	0.7646161	NA	2.182392158	1.091196079	2	2.222315789	2.222315789	1	NA	NA	0	NA	NA	1	4	NA	1	1	3.94E-16	1	0.00000513	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	17	36530035	G	C	SOCS7	CCDS32637.1	r.?	-	-	intronic	20	0	0	32	11	34.4	23	3	13	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	3.601202326	2	3	0	0	1	0.398797674	NA	3	NA	1	NA	0.601202326	1.373253493	1.373253493	1	1.34850718	1.34850718	1	NA	NA	0	NA	NA	0	4	NA	1	1	5.72E-18	1	0.000205387	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	36567258	A	T	-	-	-	-	-	-	47	0	0	46	7	15.2	34	5	14.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.598654474	2	1	1	1	1	0.401345526	NA	2	NA	1	NA	0.598654474	0.758786427	0.758786427	1	1.377475892	1.377475892	1	NA	NA	1	NA	NA	0	4	NA	1	1	3.53E-09	1	0.000000771	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	36586714	C	G	AOAH	CCDS5448.1	r.?	-	-	intronic	45	0	0	96	35	36.5	52	10	19.2	2	0	0	12	2	16.7	4	0	0	1	TRUE	FALSE	7.252817795	8.289880778	5	6	2	2	0.747182205	0.710119222	5	6	3	3	0.252817795	0.289880778	3.374364324	0.900507138	3.747182205	2.891867636	0.963955879	3	1.543887238	1.543887238	1	0	NA	0	4	NA	1	1	4.09E-55	0.001595918	1.28E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	36586822	C	T	AOAH	CCDS5448.1	r.?	-	-	intronic	38	0	0	79	32	40.5	48	8	16.7	54	0	0	106	22	20.8	60	9	15	9.33E-09	TRUE	TRUE	7.252817795	8.289880778	5	6	2	2	0.747182205	0.710119222	5	6	3	3	0.252817795	0.289880778	3.744157674	0.999192852	3.747182205	2.515322371	0.928122405	2.710119222	1.922925423	0.961462711	2	2.25927159	1.129635795	2	4	3	1	1	2.44E-52	4.91E-29	1.23E-10	2.29E-11	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	5	60305183	G	T	NDUFAF2	CCDS3979.1	r.?	-	-	intronic	38	0	0	31	13	41.9	21	5	23.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.510654691	1.255327345	2	2.563719298	1.281859649	2	NA	NA	1	NA	NA	1	4	NA	1	1	2.32E-22	1	5.95E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	36628422	T	G	-	-	-	-	-	-	37	0	0	30	8	26.7	24	8	33.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5	5	3	3	2	2	1	1	NA	NA	NA	NA	NA	NA	1.866868263	0.933434132	2	3.920052632	1.306684211	3	NA	NA	1	NA	NA	1	4	NA	1	1	2.07E-12	1	2.68E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	36658641	G	T	-	-	-	-	-	-	46	0	0	36	6	16.7	35	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.661749236	3	2	2	0	1	0.338250764	1	2	NA	1	NA	0.661749236	NA	0.777178789	0.777178789	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	2.68E-08	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	36685580	G	A	ZNF565	CCDS12491.1	r.?	-	-	intronic	43	0	0	41	6	14.6	30	5	16.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.7646161	6	2	3	2	3	0.2353839	1	3	NA	2	NA	0.7646161	NA	0.986468282	0.986468282	1	2.132912281	2.132912281	1	NA	NA	0	NA	NA	1	4	NA	1	1	6.05E-08	1	0.000000401	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	36717621	C	T	-	-	-	-	-	-	45	0	0	48	9	18.8	35	2	5.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.133128081	5	2	3	1	2	0.866871919	1	2	NA	2	NA	0.133128081	NA	0.963527081	0.963527081	1	0.671	0.671	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.75E-12	1	0.013332991	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	36727045	T	A	AOAH	CCDS5448.1	r.?	-	-	intronic	52	0	0	81	30	37	41	3	7.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7.252817795	8.289880778	5	6	2	2	0.747182205	0.710119222	5	6	3	3	0.252817795	0.289880778	3.420588492	0.912842852	3.747182205	1.099512174	1.099512174	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.02E-47	1	0.001155993	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	36775634	C	G	TGM2	CCDS13302.1	r.?	-	-	intronic	14	0	0	42	25	59.5	22	2	9.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	4.362325493	2	2	1	2	1	0.637674507	NA	3	NA	2	NA	0.362325493	2.970249501	1.48512475	2	1.013217234	1.013217234	1	NA	NA	0	NA	NA	1	4	NA	1	1	6.99E-47	1	0.005403392	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	36777464	T	A	-	-	-	-	-	-	35	0	0	32	15	46.9	30	8	26.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.661749236	3	2	2	0	1	0.338250764	1	2	NA	1	NA	0.661749236	NA	2.18261588	1.09130794	2	2.609105263	1.304552632	2	NA	NA	0	NA	NA	1	4	NA	1	1	1.59E-26	1	2.07E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	36824082	G	T	-	-	-	-	-	-	50	0	0	43	8	18.6	38	3	7.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5	5	3	3	2	2	1	1	NA	NA	NA	NA	NA	NA	1.30051497	1.30051497	1	0.929982456	0.929982456	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.85E-11	1	0.000925091	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	36834349	C	T	FEZ2	ENST00000357996	r.?	-	-	intronic	56	0	0	68	17	25	43	11	25.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	1.998003992	0.999001996	2	3.269614035	1.089871345	3	NA	NA	1	NA	NA	1	4	NA	1	1	2.69E-24	1	2.42E-16	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	61278847	G	T	-	-	-	-	-	-	42	0	0	35	8	22.9	31	4	12.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.372171657	1.372171657	1	1.389578947	1.389578947	1	NA	NA	1	NA	NA	1	4	NA	1	1	8.15E-12	1	0.0000177	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	36865565	G	T	C6orf89	CCDS4827.1	r.?	-	-	intronic	39	0	0	50	11	22	35	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	8.350310876	7	5	4	3	3	0.649689124	1	6	NA	3	NA	0.350310876	NA	2.275311906	0.968089766	2.350310876	0	NA	0	NA	NA	0	NA	NA	0	NA	NA	1	1	1.52E-15	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	36888442	A	C	-	-	-	-	-	-	44	0	0	49	8	16.3	26	4	15.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.661749236	3	2	2	0	1	0.338250764	1	2	NA	1	NA	0.661749236	NA	0.758563728	0.758563728	1	1.504877193	1.504877193	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.47E-10	1	0.00000856	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	17	36920044	C	T	PIP4K2B	CCDS11329.1	r.?	-	-	downstream	17	0	0	32	20	62.5	38	7	18.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	3.601202326	2	3	0	0	1	0.398797674	NA	3	NA	1	NA	0.601202326	2.49500998	1.24750499	2	1.908656316	1.908656316	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.03E-38	1	8.61E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	36928518	T	C	-	-	-	-	-	-	41	0	0	20	9	45	19	2	10.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1	2.620991218	1	2	0	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.346407186	1.346407186	1	0.986256709	0.986256709	1	NA	NA	0	NA	NA	1	4	NA	1	1	3.12E-16	1	0.004039874	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	36931362	C	T	-	-	-	-	-	-	47	0	0	61	36	59	43	10	23.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6.241955165	4.32434803	4	2	2	2	0.758044835	0.67565197	4	3	3	2	0.241955165	0.32434803	4.858042969	1.214510742	4	2.58543274	1.112325997	2.32434803	NA	NA	0	NA	NA	0	4	NA	1	1	1.13E-66	1	1.61E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	63019662	C	A	-	-	-	-	-	-	40	0	0	64	7	10.9	36	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.653129741	0.653129741	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	3.78E-08	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	64129571	G	T	CWC27	CCDS3982.2	r.?	-	-	intronic	63	0	0	50	18	36	36	6	16.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.157125749	1.078562874	2	1.798912281	1.798912281	1	NA	NA	1	NA	NA	1	4	NA	1	1	5.92E-29	1	2.68E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	37038557	G	A	EPM2AIP1	CCDS46790.1	r.?	-	-	upstream	56	0	0	53	9	17	29	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5	5	3	3	2	2	1	1	NA	NA	NA	NA	NA	NA	1.188642715	1.188642715	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	7.10E-12	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	37040127	A	C	AC105201.1	ENST00000510201	r.?	-	-	intronic	52	0	0	35	20	57.1	24	8	33.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.279441118	1.139720559	2	2.921052632	1.460526316	2	NA	NA	1	NA	NA	1	4	NA	1	1	2.88E-37	1	2.68E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	37071045	A	C	-	-	-	-	-	-	47	0	0	58	8	13.8	30	4	13.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6.241955165	4.32434803	4	2	2	2	0.758044835	0.67565197	4	3	3	2	0.241955165	0.32434803	1.136288016	1.136288016	1	1.475804955	1.475804955	1	NA	NA	0	NA	NA	0	4	NA	1	1	5.99E-10	1	0.0000154	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	37107770	G	C	-	-	-	-	-	-	47	0	0	33	12	36.4	24	3	12.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1	2.620991218	1	2	0	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.089093812	1.089093812	1	1.17411513	1.17411513	1	NA	NA	0	NA	NA	1	4	NA	1	1	7.86E-20	1	0.000233853	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	76213885	G	A	S100Z	CCDS43333.1	r.?	-	-	intronic	48	0	0	48	13	27.1	43	1	2.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.623836327	0.811918164	2	0.247754386	0.247754386	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.00E-19	1	0.193893409	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	37144220	A	G	ZCCHC7	CCDS6608.2	r.?	-	-	intronic	46	0	0	40	9	22.5	27	4	14.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.133128081	5	2	3	1	2	0.866871919	1	2	NA	2	NA	0.133128081	NA	1.153157411	1.153157411	1	1.742245614	1.742245614	1	NA	NA	0	NA	NA	1	4	NA	1	1	4.64E-13	1	0.00001	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	37160010	A	G	-	-	-	-	-	-	47	0	0	35	15	42.9	39	4	10.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.598654474	2	1	1	1	1	0.401345526	NA	2	NA	1	NA	0.598654474	2.14157485	1.070787425	2	0.965170183	0.965170183	1	NA	NA	1	NA	NA	0	4	NA	1	1	9.02E-26	1	0.0000447	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	37169890	A	G	-	-	-	-	-	-	53	0	0	37	6	16.2	35	4	11.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.661749236	3	2	2	0	1	0.338250764	1	2	NA	1	NA	0.661749236	NA	0.753909963	0.753909963	1	1.114	1.114	1	NA	NA	0	NA	NA	1	4	NA	1	1	3.18E-08	1	0.0000289	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	78202625	G	T	ARSB	CCDS4043.1	r.?	-	-	intronic	53	0	0	54	26	48.1	47	11	23.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.882159681	1.44107984	2	2.520631579	1.260315789	2	NA	NA	1	NA	NA	1	4	NA	1	1	2.44E-45	1	7.21E-16	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	22	37194520	C	T	PVALB	CCDS13933.1	r.?	-	-	downstream	26	0	0	27	10	37	18	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.292921926	5	3	4	0	1	0.707078074	1	3	NA	1	NA	0.292921926	NA	1.955427021	0.97771351	2	0	0	1	NA	NA	0	NA	NA	1	4	NA	1	1	7.62E-17	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	37218918	C	T	HEATR5B	CCDS33181.1	r.?	-	-	intronic	43	0	0	56	18	32.1	31	7	22.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	2.565437126	0.855145709	3	2.88645614	0.962152047	3	NA	NA	1	NA	NA	1	4	NA	1	1	6.76E-28	1	1.85E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	37224980	C	A	PRRG1	CCDS14239.1	r.?	-	-	intronic	42	0	0	56	38	67.9	35	8	22.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6.241955165	4.32434803	4	2	2	2	0.758044835	0.67565197	4	3	3	2	0.241955165	0.32434803	5.590866399	1.3977166	4	2.541047629	1.093230272	2.32434803	NA	NA	1	NA	NA	0	4	NA	1	1	7.07E-74	1	8.15E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	37226786	T	A	-	-	-	-	-	-	61	0	0	41	18	43.9	35	6	17.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.661749236	3	2	2	0	1	0.338250764	1	2	NA	1	NA	0.661749236	NA	2.043002924	1.021501462	2	1.671	1.671	1	NA	NA	0	NA	NA	1	4	NA	1	1	6.91E-31	1	2.24E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	37244547	C	A	KIAA1239	CCDS47040.1	r.?	-	-	upstream	27	0	0	41	12	29.3	18	2	11.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.661749236	3	2	2	0	1	0.338250764	1	2	NA	1	NA	0.661749236	NA	1.363553205	1.363553205	1	1.084684211	1.084684211	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.69E-18	1	0.003626632	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	164787	C	T	-	-	-	-	-	-	57	0	0	48	8	16.7	40	1	2.5	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1	NA	NA	1	NA	NA	1	NA	NA	1	NA	NA	1	1	1.23E-10	1	0.181679879	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	37290007	G	A	AC020928.2	ENST00000500219	r.?	-	-	intronic	49	0	0	43	17	39.5	44	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.7646161	6	2	3	2	3	0.2353839	1	3	NA	2	NA	0.7646161	NA	2.668869667	0.965367187	2.7646161	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	2.84E-28	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	3618241	C	A	-	-	-	-	-	-	43	0	0	55	23	41.8	42	14	33.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.37044448	5	2	3	1	2	0.62955552	1	2	NA	2	NA	0.37044448	NA	2.241508467	1.120754234	2	3.920052632	1.306684211	3	NA	NA	0	NA	NA	1	4	NA	1	1	1.91E-38	1	2.83E-22	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	37300593	C	T	-	-	-	-	-	-	36	0	0	44	16	36.4	37	9	24.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.817093812	0.908546906	2	2.374578947	1.187289474	2	NA	NA	1	NA	NA	1	4	NA	1	1	5.57E-26	1	2.14E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	78747477	C	A	HOMER1	CCDS43335.1	r.?	-	-	intronic	22	0	0	42	15	35.7	29	8	27.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.139149701	1.06957485	2	2.973052632	1.486526316	2	NA	NA	1	NA	NA	1	4	NA	1	1	2.65E-24	1	1.53E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	81721944	T	C	-	-	-	-	-	-	41	0	0	40	14	35	40	8	20	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.097205589	1.048602794	2	2.154385965	1.077192982	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.25E-22	1	2.61E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	37352064	C	A	ELMO1	CCDS5449.1	r.?	-	-	intronic	54	0	0	96	19	19.8	59	7	11.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	10.19154907	8.289880778	8	6	2	2	0.808450931	0.710119222	8	6	3	3	0.191549069	0.289880778	2.412345877	0.858959596	2.808450931	1.792355462	1.792355462	1	NA	NA	0	NA	NA	0	4	NA	1	1	7.42E-25	1	2.12E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	83891628	C	T	-	-	-	-	-	-	41	0	0	50	12	24	37	9	24.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.438083832	1.438083832	1	2.617578947	1.308789474	2	NA	NA	1	NA	NA	1	4	NA	1	1	2.49E-17	1	2.14E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	37401987	G	C	-	-	-	-	-	-	51	0	0	37	10	27	30	2	6.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.347844311	1.347844311	1	0.654719298	0.654719298	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.01E-15	1	0.009909649	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	37402288	G	A	ENSG00000250349	ENST00000465127	r.?	-	-	intronic	15	0	0	51	31	60.8	24	8	33.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6.241955165	4.32434803	4	2	2	2	0.758044835	0.67565197	4	3	3	2	0.241955165	0.32434803	5.006254449	1.251563612	4	3.695060526	1.589719129	2.32434803	NA	NA	0	NA	NA	0	4	NA	1	1	3.28E-58	1	2.68E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	37404024	G	A	GOLGA4	CCDS2666.1	r.?	-	-	intronic	19	0	0	36	10	27.8	28	8	28.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5	5	3	3	2	2	1	1	NA	NA	NA	NA	NA	NA	1.943780439	0.97189022	2	3.36677193	1.12225731	3	NA	NA	1	NA	NA	1	4	NA	1	1	2.21E-15	1	1.11E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	37426339	C	T	ANKRD30A	CCDS7193.1	r.?	-	-	intronic	25	0	0	52	12	23.1	28	5	17.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.297222263	4	2	2	2	2	0.702777737	1	3	NA	2	NA	0.297222263	NA	1.452814031	1.452814031	1	1.928175439	1.928175439	1	NA	NA	1	NA	NA	0	4	NA	1	1	4.19E-17	1	0.000000279	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	37464808	C	G	LANCL3	CCDS14240.1	r.?	-	-	intronic	42	0	0	51	6	11.8	34	6	17.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6.241955165	4.32434803	4	2	2	2	0.758044835	0.67565197	4	3	3	2	0.241955165	0.32434803	0.971608594	0.971608594	1	1.952944902	1.952944902	1	NA	NA	1	NA	NA	0	4	NA	1	1	0.000000232	1	1.86E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	37491795	A	G	GRIK3	CCDS416.1	r.?	-	-	intronic	57	0	0	45	12	26.7	33	2	6.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.332868263	1.332868263	1	0.718087719	0.718087719	1	NA	NA	0	NA	NA	1	4	NA	1	1	6.03E-18	1	0.011909843	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	37531383	A	T	PRKD3	CCDS1789.1	r.?	-	-	intronic	53	0	0	65	17	26.2	42	6	14.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	2.093908184	1.046954092	2	1.826385965	1.826385965	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.14E-24	1	7.02E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	37543089	G	A	PPP1R16B	CCDS13309.1	r.?	-	-	intronic	42	0	0	44	14	31.8	30	5	16.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4.362325493	2	2	2	2	1	0.637674507	NA	3	NA	2	NA	0.362325493	1.905461078	0.952730539	2	1.859420638	1.859420638	1	NA	NA	1	NA	NA	1	4	NA	1	1	6.10E-22	1	0.000000401	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	37559756	G	C	FAM83D	CCDS42872.1	r.?	-	-	intronic	31	0	0	59	26	44.1	42	8	19	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4.362325493	2	2	2	2	1	0.637674507	NA	3	NA	2	NA	0.362325493	2.642479042	1.321239521	2	2.11550851	1.057754255	2	NA	NA	1	NA	NA	1	4	NA	1	1	5.03E-44	1	3.96E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	37573958	T	C	FBXO10	CCDS47966.1	r.?	-	-	intronic	46	0	0	47	21	44.7	30	5	16.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.133128081	5	2	3	1	2	0.866871919	1	2	NA	2	NA	0.133128081	NA	2.29093939	1.145469695	2	1.965912281	1.965912281	1	NA	NA	0	NA	NA	1	4	NA	1	1	5.29E-36	1	0.000000401	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	37621314	T	G	-	-	-	-	-	-	55	0	0	99	19	19.2	44	5	11.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	10.19154907	8.289880778	8	6	2	2	0.808450931	0.710119222	8	6	3	3	0.191549069	0.289880778	2.339244487	0.832930517	2.808450931	1.717046409	1.717046409	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.40E-24	1	0.00000288	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	37633022	T	C	-	-	-	-	-	-	57	0	0	62	38	61.3	48	18	37.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	4.899105788	1.224776447	4	4.789473684	1.197368421	4	NA	NA	1	NA	NA	1	4	NA	1	1	3.14E-71	1	2.42E-29	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	37667954	G	T	GPR124	CCDS6097.2	r.?	-	-	intronic	35	0	0	27	7	25.9	31	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1	2.620991218	1	2	0	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0.774932136	0.774932136	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	6.36E-11	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	37667955	A	T	GPR124	CCDS6097.2	r.?	-	-	intronic	33	0	0	26	6	23.1	31	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1	2.620991218	1	2	0	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0.691155689	0.691155689	1	0	0	1	NA	NA	0	NA	NA	0	3	NA	1	1	3.30E-09	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	37701215	G	T	-	-	-	-	-	-	46	0	0	35	8	22.9	27	6	22.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.143171657	1.143171657	1	2.169368421	1.084684211	2	NA	NA	1	NA	NA	1	4	NA	1	1	8.15E-12	1	4.23E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	37711246	C	T	-	-	-	-	-	-	44	0	0	72	20	27.8	42	10	23.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	10.19154907	8.289880778	8	6	2	2	0.808450931	0.710119222	8	6	3	3	0.191549069	0.289880778	3.38703108	0.889346126	3.808450931	3.584710923	0.96619831	3.710119222	NA	NA	0	NA	NA	0	4	NA	1	1	2.32E-29	1	1.24E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	37749610	A	T	ENSG00000250349	ENST00000465127	r.?	-	-	intronic	60	0	0	67	12	17.9	44	2	4.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6.241955165	4.32434803	4	2	2	2	0.758044835	0.67565197	4	3	3	2	0.241955165	0.32434803	1.473880833	1.473880833	1	0.499332503	0.499332503	1	NA	NA	0	NA	NA	0	4	NA	1	1	1.14E-15	1	0.020580492	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	37756402	G	C	ENSG00000250349	ENST00000465127	r.?	-	-	intronic	32	0	0	56	11	19.6	28	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	6.241955165	4.32434803	4	2	2	2	0.758044835	0.67565197	4	3	3	2	0.241955165	0.32434803	1.613858342	1.613858342	1	0	NA	0	NA	NA	0	NA	NA	0	NA	NA	1	1	5.91E-15	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	37762528	C	A	-	-	-	-	-	-	67	0	0	29	12	41.4	39	2	5.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.652694611	0.826347305	2	0.447368421	0.447368421	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.17E-20	1	0.016387522	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	37775819	G	A	ENSG00000250349	ENST00000465127	r.?	-	-	intronic	33	1	3	61	34	55.7	34	8	23.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6.241955165	4.32434803	4	2	2	2	0.758044835	0.67565197	4	3	3	2	0.241955165	0.32434803	4.586321921	1.14658048	4	2.607625296	1.12187386	2.32434803	NA	NA	1	NA	NA	0	4	NA	0.15245715	1	8.06E-62	1	6.32E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	17	37778391	A	G	PPP1R1B	CCDS11339.1	r.?	-	-	upstream	25	0	0	73	18	24.7	42	10	23.8	279	0	0	83	18	21.7	65	10	15.4	1.08E-09	TRUE	TRUE	5.161492543	6.799497628	5	6	0	0	0.838507457	0.200502372	5	6	1	1	0.161492543	0.799497628	1.766916602	0.96106034	1.838507457	3.229999734	1.009216479	3.200502372	1.552311347	0.844332364	1.838507457	2.089999828	1.044999914	2	4	3	1	1	1.62E-25	2.09E-24	1.24E-14	1.36E-12	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	4	37804300	T	C	-	-	-	-	-	-	48	0	0	40	6	15	34	5	14.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.661749236	3	2	2	0	1	0.338250764	1	2	NA	1	NA	0.661749236	NA	0.698064781	0.698064781	1	1.436473684	1.436473684	1	NA	NA	0	NA	NA	1	4	NA	1	1	5.18E-08	1	0.000000771	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	37817641	C	T	-	-	-	-	-	-	46	0	0	77	11	14.3	44	5	11.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	1.142858283	1.142858283	1	1.456	1.456	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.41E-13	1	0.00000288	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	37848867	A	C	-	-	-	-	-	-	44	0	0	34	4	11.8	36	1	2.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4.362325493	2	2	2	2	1	0.637674507	NA	3	NA	2	NA	0.362325493	0.707057884	0.707057884	1	0.311759149	0.311759149	1	NA	NA	1	NA	NA	0	4	NA	1	1	0.0000257	1	0.165106833	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	86069979	C	T	-	-	-	-	-	-	47	0	0	51	19	37.3	42	9	21.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.235021956	1.117510978	2	2.305192982	1.152596491	2	NA	NA	1	NA	NA	1	4	NA	1	1	7.94E-31	1	7.51E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	37887267	C	T	-	-	-	-	-	-	63	0	0	37	9	24.3	30	2	6.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.21305988	1.21305988	1	0.654719298	0.654719298	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.14E-13	1	0.009909649	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	89892572	C	T	GPR98	CCDS47246.1	r.?	-	-	intronic	14	0	0	35	15	42.9	14	3	21.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.57057485	1.285287425	2	2.305192982	2.305192982	1	NA	NA	1	NA	NA	1	4	NA	1	1	9.02E-26	1	0.0000437	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	37916753	C	A	-	-	-	-	-	-	55	0	0	39	5	12.8	34	2	5.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.638978044	0.638978044	1	0.57654386	0.57654386	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.00000156	1	0.012612579	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	37923826	G	A	-	-	-	-	-	-	48	0	0	23	4	17.4	39	5	12.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.868610778	0.868610778	1	1.250807018	1.250807018	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.00000513	1	0.00000156	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	37944620	T	A	-	-	-	-	-	-	61	0	0	34	9	26.5	43	1	2.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.057884232	1.057884232	1	0.201754386	0.201754386	1	NA	NA	1	NA	NA	1	4	NA	1	1	9.15E-14	1	0.193893409	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	37944856	C	T	SYTL5	CCDS14244.1	r.?	-	-	intronic	53	0	0	69	10	14.5	36	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	6.241955165	4.32434803	4	2	2	2	0.758044835	0.67565197	4	3	3	2	0.241955165	0.32434803	1.193925814	1.193925814	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	2.54E-12	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	17	37950490	T	C	IKZF3	CCDS11346.1	r.?	-	-	intronic	41	0	0	79	51	64.6	49	17	34.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5.161492543	6.799497628	5	6	0	0	0.838507457	0.200502372	5	6	1	1	0.161492543	0.799497628	4.621166498	0.955080991	4.838507457	4.709285326	0.941857065	5	NA	NA	0	NA	NA	1	4	NA	1	1	7.32E-97	1	4.26E-27	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	17	37966047	G	T	IKZF3	CCDS11346.1	r.?	-	-	intronic	38	0	0	111	19	17.1	54	4	7.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5.161492543	6.799497628	5	6	0	0	0.838507457	0.200502372	5	6	1	1	0.161492543	0.799497628	1.223249955	1.223249955	1	1.004285632	1.004285632	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.43E-23	1	0.000161898	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	17	37968937	G	A	IKZF3	CCDS11346.1	r.?	-	-	intronic	40	0	0	63	17	27	49	9	18.4	0	0	NA	1	0	0	0	0	NA	1	TRUE	FALSE	5.161492543	6.799497628	5	6	0	0	0.838507457	0.200502372	5	6	1	1	0.161492543	0.799497628	1.931447298	0.965723649	2	2.497142651	1.134805708	2.200502372	0	NA	0	NA	NA	1	4	NA	1	1	6.22E-25	1	3.35E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	21	37970473	G	C	-	-	-	-	-	-	28	0	0	56	8	14.3	35	3	8.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.559012765	5	2	3	2	2	0.440987235	1	3	NA	2	NA	0.559012765	NA	0.936797109	0.936797109	1	1.012385965	1.012385965	1	NA	NA	0	NA	NA	1	4	NA	1	1	4.48E-10	1	0.000725791	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	37972676	C	A	-	-	-	-	-	-	30	0	0	38	17	44.7	30	3	10	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.297222263	4	2	2	2	2	0.702777737	1	3	NA	2	NA	0.297222263	NA	2.811289489	1.223777749	2.297222263	1.077192982	1.077192982	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.99E-29	1	0.000458697	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	37993934	G	T	EPDR1	CCDS5454.1	r.?	-	-	downstream	59	0	0	77	28	36.4	40	10	25	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	10.19154907	8.289880778	8	6	2	2	0.808450931	0.710119222	8	6	3	3	0.191549069	0.289880778	4.434817674	0.922296544	4.808450931	3.765452651	1.014914191	3.710119222	NA	NA	1	NA	NA	0	4	NA	1	1	2.30E-44	1	7.22E-15	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	17	38003166	T	C	IKZF3	CCDS11346.1	r.?	-	-	intronic	45	0	0	78	7	9	56	7	12.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5.161492543	6.799497628	5	6	0	0	0.838507457	0.200502372	5	6	1	1	0.161492543	0.799497628	0.643815766	0.643815766	1	1.696428432	1.696428432	1	NA	NA	0	NA	NA	1	4	NA	1	1	0.000000151	1	1.46E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	38017028	G	T	ZNF793	CCDS46062.1	r.?	-	-	intronic	41	0	0	65	14	21.5	39	3	7.7	0	0	NA	0	0	NA	1	0	0	1	TRUE	FALSE	4.7646161	6	2	3	2	3	0.2353839	1	3	NA	2	NA	0.7646161	NA	1.452675895	1.452675895	1	0.983438596	0.983438596	1	NA	NA	0	0	0	1	4	NA	1	1	2.93E-19	1	0.000998458	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	38041817	C	G	SRPX	CCDS14245.1	r.?	-	-	intronic	53	0	0	70	31	44.3	43	4	9.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6.241955165	4.32434803	4	2	2	2	0.758044835	0.67565197	4	3	3	2	0.241955165	0.32434803	3.647649212	0.970624187	3.758044835	1.03195384	1.03195384	1	NA	NA	1	NA	NA	0	4	NA	1	1	2.75E-52	1	0.000066	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	97204844	T	G	-	-	-	-	-	-	57	0	0	80	45	56.2	43	14	32.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	3.367512974	1.683756487	2	3.511649123	1.755824561	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.39E-81	1	4.18E-22	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	38085293	C	T	SRPX	ENST00000343800	r.?	-	-	upstream	58	0	0	57	5	8.8	37	6	16.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6.241955165	4.32434803	4	2	2	2	0.758044835	0.67565197	4	3	3	2	0.241955165	0.32434803	0.72458946	0.72458946	1	1.797597012	1.797597012	1	NA	NA	0	NA	NA	0	4	NA	1	1	0.0000105	1	3.18E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	98300085	C	T	-	-	-	-	-	-	33	0	0	38	22	57.9	20	4	20	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.311377246	1.155688623	2	1.754385965	1.754385965	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.91E-41	1	0.00000284	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	32719729	T	G	-	-	-	-	-	-	33	0	0	30	7	23.3	22	2	9.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.37044448	5	2	3	1	2	0.62955552	1	2	NA	2	NA	0.37044448	NA	1.249453284	1.249453284	1	1.071245614	1.071245614	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.44E-10	1	0.005403392	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	38096949	T	C	-	-	-	-	-	-	61	0	0	83	12	14.5	41	2	4.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	10.19154907	8.289880778	8	6	2	2	0.808450931	0.710119222	8	6	3	3	0.191549069	0.289880778	1.76661693	0.976867495	1.808450931	0.73802872	0.73802872	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.70E-14	1	0.018015855	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	38105195	C	T	-	-	-	-	-	-	48	0	0	73	7	9.6	45	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	0.767233533	0.767233533	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	9.54E-08	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	100465183	C	T	-	-	-	-	-	-	55	0	0	27	6	22.2	32	4	12.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.886227545	0.886227545	1	1.096491228	1.096491228	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.23E-09	1	0.0000201	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	38114594	G	A	-	-	-	-	-	-	32	0	0	37	6	16.2	26	2	7.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.133128081	5	2	3	1	2	0.866871919	1	2	NA	2	NA	0.133128081	NA	0.830273336	0.830273336	1	0.906438596	0.906438596	1	NA	NA	0	NA	NA	1	4	NA	1	1	3.18E-08	1	0.007502227	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	38197762	A	T	FAM82A1	CCDS1792.1	r.?	-	-	intronic	42	0	0	52	8	15.4	42	4	9.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	1.230770459	1.230770459	1	1.213333333	1.213333333	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.42E-10	1	0.0000601	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	38219913	A	C	-	-	-	-	-	-	49	0	0	62	18	29	44	5	11.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.7646161	6	2	3	2	3	0.2353839	1	3	NA	2	NA	0.7646161	NA	1.9594233	0.97971165	2	1.456	1.456	1	NA	NA	0	NA	NA	1	4	NA	1	1	5.72E-27	1	0.00000288	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	100482550	G	T	-	-	-	-	-	-	35	0	0	24	6	25	35	5	14.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.998003992	0.998003992	1	1.254385965	1.254385965	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.95E-09	1	0.000000895	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	38288363	G	A	BTBD9	CCDS47418.1	r.?	-	-	intronic	39	0	0	41	18	43.9	37	9	24.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.203098217	7	2	4	2	3	0.796901783	1	3	NA	2	NA	0.203098217	NA	2.719655127	1.234468398	2.203098217	3.346578947	1.115526316	3	NA	NA	0	NA	NA	1	4	NA	1	1	6.91E-31	1	2.14E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	38336285	C	A	INPP5B	CCDS41306.1	r.?	-	-	intronic	29	0	0	32	8	25	27	4	14.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.248003992	1.248003992	1	1.742245614	1.742245614	1	NA	NA	0	NA	NA	1	4	NA	1	1	3.69E-12	1	0.00001	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	38345388	A	G	ZNF33A	CCDS44372.1	r.2514a>g	c.2336A>G	p.E779G	missense	53	0	0	40	11	27.5	36	9	25	141	0	0	265	114	43	319	45	14.1	1.02E-36	TRUE	TRUE	4.297222263	4	2	2	2	2	0.702777737	1	3	NA	2	NA	0.297222263	NA	1.729540514	0.864770257	2	2.692982456	1.346491228	2	2.704372439	1.177235866	2.297222263	1.518842105	0.759421053	2	4	3	1	1	9.88E-17	4.99E-186	1.63E-13	1.12E-49	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	5	105227547	C	T	-	-	-	-	-	-	38	0	0	37	16	43.2	31	7	22.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.724550898	0.862275449	2	1.98245614	0.99122807	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.78E-27	1	1.85E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	38402558	A	G	AC007245.3	ENST00000515771	r.?	-	-	intronic	38	0	0	75	6	8	48	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	10.19154907	8.289880778	8	6	2	2	0.808450931	0.710119222	8	6	3	3	0.191549069	0.289880778	0.974685203	0.974685203	1	0	NA	0	NA	NA	0	NA	NA	0	NA	NA	1	1	0.00000234	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	38418916	C	T	-	-	-	-	-	-	42	0	0	32	17	53.1	30	10	33.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.119760479	1.05988024	2	2.921052632	1.460526316	2	NA	NA	1	NA	NA	1	4	NA	1	1	4.02E-31	1	2.68E-16	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	38445294	G	T	-	-	-	-	-	-	37	0	0	52	14	26.9	35	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.297222263	4	2	2	2	2	0.702777737	1	3	NA	2	NA	0.297222263	NA	1.691805084	0.845902542	2	0	0	1	NA	NA	1	NA	NA	0	3	NA	1	1	9.04E-21	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	38470518	G	A	-	-	-	-	-	-	40	0	0	46	17	37	33	6	18.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4.362325493	2	2	2	2	1	0.637674507	NA	3	NA	2	NA	0.362325493	2.217045908	1.108522954	2	2.026434468	2.026434468	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.16E-27	1	1.54E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	38477329	G	A	-	-	-	-	-	-	67	0	0	28	12	42.9	29	9	31	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1	2.620991218	1	2	0	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.28357485	1.28357485	1	2.911805523	1.455902762	2	NA	NA	0	NA	NA	1	4	NA	1	1	6.90E-21	1	1.79E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	38486537	G	A	UTP11L	CCDS429.1	r.?	-	-	intronic	37	0	0	45	5	11.1	33	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	0.554113772	0.554113772	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	0.00000323	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	38495324	G	A	LIFR	CCDS3927.1	r.?	-	-	intronic	50	0	0	29	15	51.7	27	7	25.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.063872255	1.031936128	2	2.271929825	1.135964912	2	NA	NA	1	NA	NA	1	4	NA	1	1	2.22E-27	1	6.36E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	38509319	C	T	SIPA1L3	CCDS33007.1	r.?	-	-	intronic	46	0	0	30	5	16.7	37	1	2.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.7646161	6	2	3	2	3	0.2353839	1	3	NA	2	NA	0.7646161	NA	1.128357555	1.128357555	1	0.344842105	0.344842105	1	NA	NA	0	NA	NA	1	4	NA	1	1	0.000000401	1	0.169281299	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	38578557	C	G	LIFR	CCDS3927.1	r.?	-	-	intronic	29	1	3.4	30	19	63.3	29	7	24.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.526946108	1.263473054	2	2.114035088	1.057017544	2	NA	NA	1	NA	NA	1	4	NA	0.135292269	1	9.89E-37	1	1.11E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	22	38600581	G	C	MAFF	CCDS13968.1	r.?	-	-	intronic	28	0	0	26	12	46.2	28	4	14.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.292921926	5	3	4	0	1	0.707078074	1	3	NA	1	NA	0.292921926	NA	2.441641307	0.901947133	2.707078074	1.683385965	1.683385965	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.21E-21	1	0.0000116	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	38602154	A	G	-	-	-	-	-	-	38	0	0	36	10	27.8	16	3	18.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.109780439	1.109780439	1	1.649122807	1.649122807	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.21E-15	1	0.0000667	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	35938222	A	T	-	-	-	-	-	-	44	0	0	43	8	18.6	36	1	2.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5	5	3	3	2	2	1	1	NA	NA	NA	NA	NA	NA	1.30051497	1.30051497	1	0.329614035	0.329614035	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.85E-11	1	0.165106833	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	38684362	C	T	-	-	-	-	-	-	46	0	0	19	6	31.6	24	5	20.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.261477046	1.261477046	1	1.824561404	1.824561404	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.01E-10	1	0.000000123	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	108280746	G	A	FER	CCDS4098.1	r.?	-	-	intronic	52	0	0	46	23	50	35	6	17.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.996007984	0.998003992	2	1.5	1.5	1	NA	NA	1	NA	NA	1	4	NA	1	1	8.79E-41	1	2.24E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	38763998	C	T	-	-	-	-	-	-	53	0	0	31	15	48.4	31	6	19.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.932135729	0.966067864	2	1.701754386	1.701754386	1	NA	NA	1	NA	NA	1	4	NA	1	1	8.51E-27	1	1.03E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	38780047	C	T	VPS41	CCDS5457.1	r.?	-	-	intronic	38	0	0	85	16	18.8	34	5	14.7	0	0	NA	2	0	0	0	0	NA	1	TRUE	FALSE	10.19154907	8.289880778	8	6	2	2	0.808450931	0.710119222	8	6	3	3	0.191549069	0.289880778	2.290510227	1.145255113	2	2.214086159	2.214086159	1	0	NA	0	NA	NA	0	4	NA	1	1	8.67E-21	1	0.000000771	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	38834071	C	A	-	-	-	-	-	-	51	0	0	39	8	20.5	32	7	21.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.818363273	0.818363273	1	1.921052632	1.921052632	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.09E-11	1	2.36E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	38835305	G	C	DNAH8	CCDS4838.1	r.?	-	-	intronic	27	0	0	49	14	28.6	24	2	8.3	2	0	0	0	0	NA	2	0	0	1	TRUE	FALSE	4.203098217	7	2	4	2	3	0.796901783	1	3	NA	2	NA	0.203098217	NA	1.771802657	0.885901328	2	1.143070175	1.143070175	1	NA	NA	0	0	0	1	4	NA	1	1	3.50E-21	1	0.006413403	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	121037110	C	G	-	-	-	-	-	-	67	0	0	41	7	17.1	33	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.682634731	0.682634731	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	1.51E-09	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	38873080	G	A	-	-	-	-	-	-	53	0	0	37	5	13.5	26	1	3.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.538922156	0.538922156	1	0.333333333	0.333333333	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.00000119	1	0.122190858	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	38993585	T	C	-	-	-	-	-	-	44	0	0	46	5	10.9	42	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	5	2	3	2	2	1	1	NA	NA	NA	NA	NA	NA	0.653129741	0.653129741	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	0.00000361	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	38994305	C	T	-	-	-	-	-	-	14	0	0	24	13	54.2	13	5	38.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.133128081	4	2	3	1	1	0.866871919	1	2	NA	2	NA	0.133128081	NA	2.777828075	1.388914037	2	4.147192982	1.382397661	3	NA	NA	0	NA	NA	1	4	NA	1	1	2.90E-24	1	3.89E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	39016803	A	T	-	-	-	-	-	-	34	0	0	35	23	65.7	24	9	37.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6.241955165	4.32434803	4	2	2	2	0.758044835	0.67565197	4	3	3	2	0.241955165	0.32434803	5.409719035	1.352429759	4	4.161104195	1.790224244	2.32434803	NA	NA	0	NA	NA	0	4	NA	1	1	9.39E-45	1	2.39E-15	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	39029226	G	C	-	-	-	-	-	-	47	0	0	66	15	22.7	41	4	9.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	5	2	3	2	2	1	1	NA	NA	NA	NA	NA	NA	1.360187625	1.360187625	1	1.153649123	1.153649123	1	NA	NA	0	NA	NA	1	4	NA	1	1	6.45E-21	1	0.0000546	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	130104713	G	T	-	-	-	-	-	-	56	0	0	23	4	17.4	39	1	2.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.694610778	0.694610778	1	0.228070175	0.228070175	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.00000513	1	0.177567718	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	39061722	C	T	-	-	-	-	-	-	30	0	0	46	12	26.1	35	6	17.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.297222263	4	2	2	2	2	0.702777737	1	3	NA	2	NA	0.297222263	NA	1.641491178	0.820745589	2	1.842	1.842	1	NA	NA	1	NA	NA	0	4	NA	1	1	8.12E-18	1	2.24E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	39065279	C	T	-	-	-	-	-	-	50	0	0	41	6	14.6	41	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.297222263	4	2	2	2	2	0.702777737	1	3	NA	2	NA	0.297222263	NA	0.918228782	0.918228782	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	6.05E-08	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	39112522	C	T	WDR48	CCDS33738.1	r.?	-	-	intronic	51	0	0	32	7	21.9	29	3	10.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5	5	3	3	2	2	1	1	NA	NA	NA	NA	NA	NA	1.531251497	1.531251497	1	1.212508772	1.212508772	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.36E-10	1	0.000414371	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	39147554	A	G	ACTN4	CCDS12518.1	r.?	-	-	intronic	42	0	0	41	12	29.3	29	0	0	236	0	0	170	45	26.5	128	0	0	1	TRUE	TRUE	4.7646161	6	2	3	2	3	0.2353839	1	3	NA	2	NA	0.7646161	NA	1.979693196	0.989846598	2	0	0	1	1.790507498	1.014672539	1.7646161	0	0	1	3	2	1	1	1.69E-18	4.96E-63	1	1	YES	1_1	0_0	somatic	custom.pulldown.HiSeq
PD9852b	7	39205155	C	G	POU6F2	CCDS34620.2	r.?	-	-	intronic	53	0	0	109	25	22.9	44	9	20.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	10.19154907	8.289880778	8	6	2	2	0.808450931	0.710119222	8	6	3	3	0.191549069	0.289880778	2.790036394	0.993443169	2.808450931	3.087671173	1.029223724	3	NA	NA	1	NA	NA	0	4	NA	1	1	5.58E-34	1	1.18E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	39257078	G	A	LGALS7	CCDS33012.1	r.?	-	-	downstream	36	0	0	38	5	13.2	33	5	15.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.7646161	6	2	3	2	3	0.2353839	1	3	NA	2	NA	0.7646161	NA	0.891875433	0.891875433	1	1.941333333	1.941333333	1	NA	NA	0	NA	NA	1	4	NA	1	1	0.00000137	1	0.00000066	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	39265404	A	T	-	-	-	-	-	-	36	0	0	56	13	23.2	38	6	15.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6.241955165	4.32434803	4	2	2	2	0.758044835	0.67565197	4	3	3	2	0.241955165	0.32434803	1.910281303	0.955140651	2	1.753211901	1.753211901	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.89E-18	1	3.76E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	39267782	C	G	-	-	-	-	-	-	47	0	0	39	12	30.8	18	3	16.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.229540918	1.229540918	1	1.464912281	1.464912281	1	NA	NA	1	NA	NA	1	4	NA	1	1	8.43E-19	1	0.0000964	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	39271466	G	A	-	-	-	-	-	-	65	0	0	49	17	34.7	25	4	16	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.598654474	2	1	1	1	1	0.401345526	NA	2	NA	1	NA	0.598654474	1.732229541	0.86611477	2	1.499293488	1.499293488	1	NA	NA	1	NA	NA	0	4	NA	1	1	4.26E-27	1	0.00000727	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	39271629	G	A	-	-	-	-	-	-	51	0	0	45	10	22.2	37	10	27	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.108227545	1.108227545	1	3.178421053	1.059473684	3	NA	NA	0	NA	NA	1	4	NA	1	1	2.66E-14	1	3.01E-15	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	39289325	A	G	POU6F2	CCDS34620.2	r.?	-	-	intronic	51	0	0	83	19	22.9	47	7	14.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	10.19154907	8.289880778	8	6	2	2	0.808450931	0.710119222	8	6	3	3	0.191549069	0.289880778	2.790036394	0.993443169	2.808450931	2.24420978	1.12210489	2	NA	NA	1	NA	NA	0	4	NA	1	1	3.60E-26	1	4.12E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	151539706	G	T	-	-	-	-	-	-	17	0	0	22	8	36.4	26	5	19.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.453093812	1.453093812	1	1.684210526	1.684210526	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.17E-13	1	0.000000188	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	39310704	G	T	POU6F2	CCDS34620.2	r.?	-	-	intronic	30	0	0	91	25	27.5	48	5	10.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	10.19154907	8.289880778	8	6	2	2	0.808450931	0.710119222	8	6	3	3	0.191549069	0.289880778	3.350480385	1.116826795	3	1.566428303	1.566428303	1	NA	NA	1	NA	NA	0	4	NA	1	1	3.47E-36	1	0.00000447	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	39327437	A	G	HNRNPL	CCDS33015.1	r.?	-	-	intronic	30	0	0	37	9	24.3	20	5	25	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.7646161	6	2	3	2	3	0.2353839	1	3	NA	2	NA	0.7646161	NA	1.641861592	1.641861592	1	3.192982456	1.064327485	3	NA	NA	0	NA	NA	1	4	NA	1	1	2.14E-13	1	4.55E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	39343324	T	C	HNRNPL	CCDS33015.1	r.?	-	-	upstream	16	0	0	53	13	24.5	12	4	33.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.7646161	6	2	3	2	3	0.2353839	1	3	NA	2	NA	0.7646161	NA	1.655374857	0.938093479	1.7646161	4.253052632	1.417684211	3	NA	NA	0	NA	NA	1	4	NA	1	1	8.53E-19	1	0.0000003	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	39362608	G	T	KIF6	CCDS4844.1	r.?	-	-	intronic	66	0	0	64	17	26.6	41	2	4.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6.36715821	6	4	4	2	2	0.63284179	1	5	NA	2	NA	0.36715821	NA	2.223540331	0.93932899	2.36715821	0.625824561	0.625824561	1	NA	NA	1	NA	NA	0	4	NA	1	1	8.43E-25	1	0.018015855	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	39380427	C	T	RHBDL2	CCDS30680.1	r.?	-	-	intronic	37	0	0	41	21	51.2	23	5	21.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	2.555912176	1.277956088	2	2.554508772	0.851502924	3	NA	NA	0	NA	NA	1	4	NA	1	1	1.17E-37	1	9.75E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	39399930	G	T	RHBDL2	CCDS30680.1	r.?	-	-	intronic	35	0	0	36	6	16.7	29	3	10.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	0.833666667	0.833666667	1	1.212508772	1.212508772	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.68E-08	1	0.000414371	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	39463761	C	G	AKIRIN1	CCDS433.1	r.?	-	-	intronic	53	0	0	38	12	31.6	31	3	9.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.577477046	1.577477046	1	1.141877193	1.141877193	1	NA	NA	0	NA	NA	1	4	NA	1	1	5.86E-19	1	0.000505952	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	39466556	C	T	KIF6	CCDS4844.1	r.?	-	-	intronic	42	0	0	59	6	10.2	41	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6.36715821	6	4	4	2	2	0.63284179	1	5	NA	2	NA	0.36715821	NA	0.852635766	0.852635766	1	0	0	1	NA	NA	1	NA	NA	0	3	NA	1	1	0.000000561	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	39473005	C	G	-	-	-	-	-	-	24	0	0	44	15	34.1	27	4	14.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5	5	3	3	2	2	1	1	NA	NA	NA	NA	NA	NA	2.384277445	1.192138723	2	1.742245614	1.742245614	1	NA	NA	1	NA	NA	1	4	NA	1	1	6.12E-24	1	0.00001	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	39477072	A	T	KIF6	CCDS4844.1	r.?	-	-	intronic	46	0	0	71	34	47.9	56	20	35.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6.36715821	6	4	4	2	2	0.63284179	1	5	NA	2	NA	0.36715821	NA	4.004044431	1.001011108	4	4.559578947	1.139894737	4	NA	NA	1	NA	NA	0	4	NA	1	1	1.02E-58	1	6.31E-32	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	39518047	A	G	-	-	-	-	-	-	46	0	0	100	12	12	42	10	23.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	10.19154907	8.289880778	8	6	2	2	0.808450931	0.710119222	8	6	3	3	0.191549069	0.289880778	1.462027804	1.462027804	1	3.584710923	0.96619831	3.710119222	NA	NA	1	NA	NA	0	4	NA	1	1	1.71E-13	1	1.24E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	39533984	G	C	-	-	-	-	-	-	53	0	0	49	6	12.2	38	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.7646161	6	2	3	2	3	0.2353839	1	3	NA	2	NA	0.7646161	NA	0.824309112	0.824309112	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	0.000000182	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	39578882	G	A	-	-	-	-	-	-	50	0	0	60	9	15	36	5	13.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6.241955165	4.32434803	4	2	2	2	0.758044835	0.67565197	4	3	3	2	0.241955165	0.32434803	1.23509567	1.23509567	1	1.542382622	1.542382622	1	NA	NA	1	NA	NA	0	4	NA	1	1	2.29E-11	1	0.00000104	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	39631240	T	G	-	-	-	-	-	-	49	0	0	39	7	17.9	27	3	11.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.893570858	0.893570858	1	1.084684211	1.084684211	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.04E-09	1	0.000334187	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	39651221	C	A	PNN	CCDS9671.1	r.2367c>a	c.?	p.?	3'UTR variant	46	0	0	30	4	13.3	25	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.530938124	0.530938124	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.0000154	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	17	39664796	G	A	KRT13	CCDS11396.1	r.?	-	-	upstream	45	0	0	50	36	72	37	12	32.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5.161492543	6.799497628	5	6	0	0	0.838507457	0.200502372	5	6	1	1	0.161492543	0.799497628	5.150526128	1.030105226	5	4.397142495	1.046813477	4.200502372	NA	NA	0	NA	NA	0	4	NA	1	1	1.27E-71	1	4.03E-19	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	152156476	G	A	-	-	-	-	-	-	56	0	0	41	16	39	28	7	25	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.556886228	0.778443114	2	2.192982456	1.096491228	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.40E-26	1	8.44E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	39702552	T	C	-	-	-	-	-	-	34	0	0	29	10	34.5	31	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.377245509	1.377245509	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	1.79E-16	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	39820070	C	T	-	-	-	-	-	-	45	0	0	74	10	13.5	43	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	1.078922156	1.078922156	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	5.24E-12	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	39822962	G	T	-	-	-	-	-	-	39	0	0	54	34	63	34	10	29.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6.241955165	4.32434803	4	2	2	2	0.758044835	0.67565197	4	3	3	2	0.241955165	0.32434803	5.187401814	1.296850453	4	3.262305689	1.403535807	2.32434803	NA	NA	0	NA	NA	0	4	NA	1	1	1.70E-64	1	1.15E-15	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	39838253	A	C	ZHX3	CCDS13315.1	r.?	-	-	intronic	42	0	0	43	17	39.5	42	9	21.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	5	2	3	2	2	1	1	NA	NA	NA	NA	NA	NA	2.366846307	1.183423154	2	2.519192982	0.839730994	3	NA	NA	0	NA	NA	1	4	NA	1	1	2.84E-28	1	7.51E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	39868601	G	A	-	-	-	-	-	-	60	0	0	104	24	23.1	46	6	13	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	10.19154907	8.289880778	8	6	2	2	0.808450931	0.710119222	8	6	3	3	0.191549069	0.289880778	2.814403524	1.002119529	2.808450931	1.958035378	1.958035378	1	NA	NA	1	NA	NA	0	4	NA	1	1	9.41E-33	1	0.000000123	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	39939276	G	A	-	-	-	-	-	-	64	0	0	36	21	58.3	26	5	19.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.327345309	1.163672655	2	1.684210526	1.684210526	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.47E-39	1	0.000000188	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	39961062	G	T	ABCD2	CCDS8734.1	r.?	-	-	intronic	46	0	0	52	8	15.4	51	5	9.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.768770459	0.768770459	1	0.957649123	0.957649123	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.42E-10	1	0.00000606	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	39974471	T	G	-	-	-	-	-	-	57	0	0	78	45	57.7	49	19	38.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6.36715821	6	4	4	2	2	0.63284179	1	5	NA	2	NA	0.36715821	NA	4.823243501	1.104435257	4.36715821	4.955508772	1.238877193	4	NA	NA	0	NA	NA	0	4	NA	1	1	2.64E-82	1	3.12E-31	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	40030752	G	A	PABPC4	CCDS44114.1	r.?	-	-	intronic	46	0	0	41	12	29.3	31	3	9.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.462660679	1.462660679	1	1.141877193	1.141877193	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.69E-18	1	0.000505952	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	40040220	G	C	-	-	-	-	-	-	35	0	0	63	15	23.8	43	7	16.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6.36715821	6	4	4	2	2	0.63284179	1	5	NA	2	NA	0.36715821	NA	1.989483454	0.994741727	2	2.081824561	1.040912281	2	NA	NA	1	NA	NA	1	4	NA	1	1	2.97E-21	1	2.15E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	40060778	G	T	-	-	-	-	-	-	53	0	0	22	9	40.9	33	9	27.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.632734531	1.632734531	1	2.394736842	1.197368421	2	NA	NA	1	NA	NA	1	4	NA	1	1	9.16E-16	1	6.76E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	40071337	G	A	-	-	-	-	-	-	37	0	0	29	14	48.3	29	11	37.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.928143713	0.964071856	2	3.324561404	1.662280702	2	NA	NA	1	NA	NA	1	4	NA	1	1	4.41E-25	1	1.56E-18	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	153554630	G	T	-	-	-	-	-	-	49	0	0	40	19	47.5	33	6	18.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.896207585	0.948103792	2	1.596491228	1.596491228	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.27E-33	1	1.54E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	154739770	A	G	-	-	-	-	-	-	50	0	0	36	9	25	22	1	4.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.998003992	0.998003992	1	0.394736842	0.394736842	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.63E-13	1	0.104413009	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	40092064	G	A	LGALS13	CCDS33024.1	r.?	-	-	upstream	64	0	0	49	15	30.6	45	7	15.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.7646161	6	2	3	2	3	0.2353839	1	3	NA	2	NA	0.7646161	NA	2.067529413	1.033764706	2	1.992421053	0.996210526	2	NA	NA	0	NA	NA	1	4	NA	1	1	4.10E-23	1	0.000000003	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	40095531	T	C	LGALS13	CCDS33024.1	r.?	-	-	intronic	36	0	0	36	12	33.3	26	2	7.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.7646161	6	2	3	2	3	0.2353839	1	3	NA	2	NA	0.7646161	NA	2.249958479	1.124979239	2	0.983438596	0.983438596	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.73E-19	1	0.007502227	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	155332460	C	A	-	-	-	-	-	-	35	0	0	29	8	27.6	25	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.101796407	1.101796407	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	1.53E-12	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	40138086	C	T	LRRC4C	CCDS31464.1	r.?	-	-	intronic	40	0	0	31	6	19.4	36	4	11.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.968451098	0.968451098	1	1.084684211	1.084684211	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.03E-08	1	0.0000324	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	58673816	C	T	-	-	-	-	-	-	26	0	0	48	10	20.8	41	6	14.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	1.111998944	1.111998944	1	1.718701754	1.718701754	1	NA	NA	0	NA	NA	1	4	NA	1	1	5.37E-14	1	6.05E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	40147391	C	T	MYRIP	CCDS2689.1	r.?	-	-	intronic	47	0	0	43	8	18.6	30	3	10	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5	5	3	3	2	2	1	1	NA	NA	NA	NA	NA	NA	1.30051497	1.30051497	1	1.177192982	1.177192982	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.85E-11	1	0.000458697	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	40181997	C	G	LRRC4C	CCDS31464.1	r.?	-	-	intronic	50	0	0	39	7	17.9	30	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.893570858	0.893570858	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	1.04E-09	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	156214983	C	T	-	-	-	-	-	-	45	0	0	46	16	34.8	32	5	15.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.085221557	1.042610778	2	1.680421053	1.680421053	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.31E-25	1	0.000000562	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	156264154	C	A	-	-	-	-	-	-	41	0	0	44	8	18.2	33	5	15.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.090546906	1.090546906	1	1.637333333	1.637333333	1	NA	NA	1	NA	NA	1	4	NA	1	1	5.90E-11	1	0.00000066	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	40240581	T	A	CHD6	CCDS13317.1	r.?	-	-	intronic	39	0	0	46	7	15.2	45	5	11.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	5	2	3	2	2	1	1	NA	NA	NA	NA	NA	NA	0.910786427	0.910786427	1	1.306684211	1.306684211	1	NA	NA	0	NA	NA	1	4	NA	1	1	3.53E-09	1	0.00000323	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	21	40328035	C	A	-	-	-	-	-	-	24	0	0	39	13	33.3	25	4	16	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.319395774	5	3	4	0	1	0.680604226	1	3	NA	1	NA	0.319395774	NA	1.76870011	1.052419173	1.680604226	1.883508772	1.883508772	1	NA	NA	0	NA	NA	1	4	NA	1	1	8.79E-21	1	0.00000727	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	40344958	G	C	-	-	-	-	-	-	35	0	0	38	17	44.7	27	4	14.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.7646161	6	2	3	2	3	0.2353839	1	3	NA	2	NA	0.7646161	NA	3.020214534	1.0924535	2.7646161	1.890245614	1.890245614	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.99E-29	1	0.00001	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	40379396	T	A	BMF	CCDS10052.1	r.?	-	-	downstream	39	0	0	38	5	13.2	24	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.598654474	2	1	1	1	1	0.401345526	NA	2	NA	1	NA	0.598654474	0.658946108	0.658946108	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	0.00000137	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	40379397	A	T	BMF	CCDS10052.1	r.?	-	-	downstream	38	0	0	38	5	13.2	24	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.598654474	2	1	1	1	1	0.401345526	NA	2	NA	1	NA	0.598654474	0.658946108	0.658946108	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	0.00000137	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	40379398	T	A	BMF	CCDS10052.1	r.?	-	-	downstream	38	0	0	37	5	13.5	25	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.598654474	2	1	1	1	1	0.401345526	NA	2	NA	1	NA	0.598654474	0.673922156	0.673922156	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	0.00000119	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	40434454	C	T	C7orf10	ENST00000309930	r.?	-	-	intronic	47	0	0	87	6	6.9	64	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	10.19154907	8.289880778	8	6	2	2	0.808450931	0.710119222	8	6	3	3	0.191549069	0.289880778	0.840665988	0.840665988	1	0	NA	0	NA	NA	0	NA	NA	0	NA	NA	1	1	0.00000558	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	157773274	T	G	-	-	-	-	-	-	66	0	0	56	17	30.4	33	8	24.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.821572854	0.910786427	2	2.606807018	1.303403509	2	NA	NA	1	NA	NA	1	4	NA	1	1	6.22E-26	1	4.85E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	40456713	G	C	-	-	-	-	-	-	54	0	0	40	20	50	30	10	33.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.996007984	0.998003992	2	2.921052632	1.460526316	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.19E-35	1	2.68E-16	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	40461140	A	T	-	-	-	-	-	-	57	0	0	36	16	44.4	25	2	8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.77245509	0.886227545	2	0.701754386	0.701754386	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.01E-27	1	0.006948068	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	40505460	C	T	C7orf10	ENST00000309930	r.?	-	-	intronic	29	0	0	99	7	7.1	48	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	10.19154907	8.289880778	8	6	2	2	0.808450931	0.710119222	8	6	3	3	0.191549069	0.289880778	0.865033118	0.865033118	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	0.000000778	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	60648412	A	C	FHIT	CCDS2894.1	r.?	-	-	intronic	65	0	0	44	14	31.8	27	2	7.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	1.700075309	1.032935897	1.645867197	0.871122807	0.871122807	1	NA	NA	0	NA	NA	1	4	NA	1	1	6.10E-22	1	0.00807567	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	40526754	C	T	ZMAT4	CCDS34885.1	r.?	-	-	intronic	49	0	0	25	10	40	26	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1	2.620991218	1	2	0	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.196806387	1.196806387	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	2.98E-17	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	22	40551835	G	T	TNRC6B	CCDS46712.1	r.?	-	-	intronic	57	1	1.8	40	17	42.5	30	6	20	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.292921926	5	3	4	0	1	0.707078074	1	3	NA	1	NA	0.292921926	NA	2.246098605	1.123049302	2	2.354385965	1.177192982	2	NA	NA	0	NA	NA	1	4	NA	0.248523156	1	6.07E-29	1	8.37E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	162086622	C	A	-	-	-	-	-	-	42	0	0	54	4	7.4	38	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.443409182	0.443409182	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.000161898	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	40613551	A	G	ZMAT4	CCDS34885.1	r.?	-	-	intronic	52	0	0	25	9	36	19	1	5.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1	2.620991218	1	2	0	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.077125749	1.077125749	1	0.497824815	0.497824815	1	NA	NA	0	NA	NA	1	4	NA	1	1	3.71E-15	1	0.090843738	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	40615429	A	G	-	-	-	-	-	-	62	0	0	51	23	45.1	35	8	22.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	2.251399202	1.125699601	2	2.23777193	1.118885965	2	NA	NA	1	NA	NA	1	4	NA	1	1	2.05E-39	1	8.15E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	40641936	C	T	C7orf10	ENST00000309930	r.?	-	-	intronic	49	0	0	92	7	7.6	56	3	5.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	10.19154907	8.289880778	8	6	2	2	0.808450931	0.710119222	8	6	3	3	0.191549069	0.289880778	0.925950943	0.925950943	1	0.813337773	0.813337773	1	NA	NA	1	NA	NA	0	4	NA	1	1	0.000000472	1	0.00284314	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	21	40677294	C	G	BRWD1	CCDS13663.1	r.?	-	-	intronic	45	0	0	29	14	48.3	26	9	34.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.319395774	5	3	4	0	1	0.680604226	1	3	NA	1	NA	0.319395774	NA	2.565411871	0.957027466	2.680604226	4.073087719	1.01827193	4	NA	NA	0	NA	NA	1	4	NA	1	1	4.41E-25	1	5.65E-15	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	40725737	G	A	-	-	-	-	-	-	14	0	0	17	4	23.5	6	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.133128081	4	2	3	1	1	0.866871919	1	2	NA	2	NA	0.133128081	NA	1.204408852	1.204408852	1	0	0	1	NA	NA	0	NA	NA	1	4	NA	1	1	0.00000141	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	162641759	G	A	-	-	-	-	-	-	52	0	0	50	6	12	39	4	10.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.719041916	0.719041916	1	1.109508772	1.109508772	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.000000206	1	0.0000447	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	40805301	G	C	-	-	-	-	-	-	51	0	0	64	5	7.8	38	4	10.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6.36715821	6	4	4	2	2	0.63284179	1	5	NA	2	NA	0.36715821	NA	0.652015586	0.652015586	1	1.341052632	1.341052632	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.0000186	1	0.0000403	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	40810214	C	A	C7orf10	ENST00000309930	r.?	-	-	intronic	52	0	0	132	64	48.5	50	13	26	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	10.19154907	8.289880778	8	6	2	2	0.808450931	0.710119222	8	6	3	3	0.191549069	0.289880778	5.909029043	0.984838174	6	3.916070757	0.979017689	4	NA	NA	1	NA	NA	0	4	NA	1	1	1.38E-109	1	3.65E-19	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	40833064	G	T	C19orf47	CCDS12553.1	r.?	-	-	intronic	31	0	0	38	8	21.1	27	4	14.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.7646161	6	2	3	2	3	0.2353839	1	3	NA	2	NA	0.7646161	NA	1.425649366	1.425649366	1	1.890245614	1.890245614	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.67E-11	1	0.00001	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	40877613	T	C	-	-	-	-	-	-	61	0	0	67	8	11.9	38	4	10.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	0.9510499	0.9510499	1	1.341052632	1.341052632	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.96E-09	1	0.0000403	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	40933664	G	T	SERTAD1	CCDS12557.1	r.?	-	-	upstream	25	0	0	44	19	43.2	26	5	19.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.7646161	6	2	3	2	3	0.2353839	1	3	NA	2	NA	0.7646161	NA	2.918865053	1.055793987	2.7646161	2.452210526	0.817403509	3	NA	NA	0	NA	NA	1	4	NA	1	1	2.39E-32	1	0.000000188	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	40946083	G	T	-	-	-	-	-	-	47	0	0	35	5	14.3	38	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.713858283	0.713858283	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.000000895	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	40949111	T	G	-	-	-	-	-	-	58	0	0	32	10	31.2	30	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.245508982	1.245508982	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	5.70E-16	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	40984641	C	T	DEM1	CCDS453.1	r.?	-	-	downstream	55	0	0	33	14	42.4	33	9	27.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	2.11661477	1.058307385	2	3.213736842	1.071245614	3	NA	NA	0	NA	NA	1	4	NA	1	1	4.57E-24	1	6.76E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	40986399	A	G	USP9X	CCDS43930.1	r.?	-	-	intronic	47	0	0	54	34	63	38	10	26.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6.241955165	4.32434803	4	2	2	2	0.758044835	0.67565197	4	3	3	2	0.241955165	0.32434803	5.187401814	1.296850453	4	2.918321076	1.255543937	2.32434803	NA	NA	1	NA	NA	0	4	NA	1	1	1.70E-64	1	4.06E-15	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	168609101	G	A	SLIT3	CCDS4369.1	r.?	-	-	intronic	45	0	0	41	7	17.1	32	4	12.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.024634731	1.024634731	1	1.346491228	1.346491228	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.51E-09	1	0.0000201	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	169300330	C	A	DOCK2	CCDS4371.1	r.?	-	-	intronic	51	0	0	45	7	15.6	43	3	7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.934754491	0.934754491	1	0.754035088	0.754035088	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.000000003	1	0.001328364	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	41164214	T	G	-	-	-	-	-	-	54	0	0	96	4	4.2	35	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	10.19154907	8.289880778	8	6	2	2	0.808450931	0.710119222	8	6	3	3	0.191549069	0.289880778	0.511709732	0.511709732	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	0.001440082	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	61488503	G	A	-	-	-	-	-	-	40	0	0	45	12	26.7	20	1	5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	1.427421722	1.427421722	1	0.588596491	0.588596491	1	NA	NA	0	NA	NA	1	4	NA	1	1	6.03E-18	1	0.09538952	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	41216016	G	C	NFYC	CCDS44120.1	r.?	-	-	intronic	47	0	0	42	17	40.5	44	5	11.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	2.021766467	1.010883234	2	1.342	1.342	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.73E-28	1	0.00000288	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	41253528	T	G	-	-	-	-	-	-	66	0	0	41	17	41.5	26	6	23.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.656686627	0.828343313	2	2.026315789	2.026315789	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.03E-28	1	3.30E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	41261521	T	C	-	-	-	-	-	-	68	0	0	46	28	60.9	30	2	6.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.431137725	1.215568862	2	0.587719298	0.587719298	1	NA	NA	1	NA	NA	1	4	NA	1	1	9.63E-53	1	0.009909649	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	21	41320641	C	A	-	-	-	-	-	-	56	0	0	27	15	55.6	23	7	30.4	0	0	NA	1	0	0	0	0	NA	1	TRUE	FALSE	3.319395774	5	3	4	0	1	0.680604226	1	3	NA	1	NA	0.319395774	NA	2.953144928	0.984381643	3	3.578666667	0.894666667	4	0	NA	0	NA	NA	1	4	NA	1	1	5.01E-28	1	1.79E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	41356874	A	T	-	-	-	-	-	-	51	0	0	64	7	10.9	46	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	0.871129741	0.871129741	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	3.78E-08	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	41398539	G	T	-	-	-	-	-	-	52	0	0	62	11	17.7	35	1	2.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6.36715821	6	4	4	2	2	0.63284179	1	5	NA	2	NA	0.36715821	NA	1.479573829	1.479573829	1	0.370385965	0.370385965	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.96E-14	1	0.16091139	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	41402870	C	T	ENSG00000130612	ENST00000252909	r.?	-	-	intronic	40	0	0	42	16	38.1	47	7	14.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.7646161	6	2	3	2	3	0.2353839	1	3	NA	2	NA	0.7646161	NA	2.574276818	0.931151641	2.7646161	1.903017544	1.903017544	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.25E-26	1	4.12E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	41407896	C	T	-	-	-	-	-	-	50	0	0	42	9	21.4	31	2	6.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.854291417	0.854291417	1	0.570175439	0.570175439	1	NA	NA	1	NA	NA	1	4	NA	1	1	7.51E-13	1	0.010558179	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	41429083	C	A	-	-	-	-	-	-	41	0	0	37	7	18.9	24	3	12.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.943491018	0.943491018	1	1.221491228	1.221491228	1	NA	NA	1	NA	NA	1	4	NA	1	1	7.05E-10	1	0.000233853	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	41438786	G	T	-	-	-	-	-	-	52	0	0	64	6	9.4	41	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	0.751249501	0.751249501	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.000000914	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	41503772	G	A	CASK	CCDS48095.1	r.?	-	-	intronic	49	0	0	63	39	61.9	35	11	31.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6.241955165	4.32434803	4	2	2	2	0.758044835	0.67565197	4	3	3	2	0.241955165	0.32434803	5.096828131	1.274207033	4	3.484231246	1.499014434	2.32434803	NA	NA	1	NA	NA	0	4	NA	1	1	2.53E-73	1	1.82E-17	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	41526396	A	G	ULK4	CCDS43071.1	r.?	-	-	intronic	28	0	0	47	25	53.2	38	10	26.3	0	0	NA	1	1	100	0	0	NA	1	TRUE	FALSE	5	5	3	3	2	2	1	1	NA	NA	NA	NA	NA	NA	3.719752495	1.239917498	3	3.096017544	1.032005848	3	6.992015968	6.992015968	1	NA	NA	1	4	NA	1	1	3.98E-45	0.005	4.06E-15	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	84202476	C	T	-	-	-	-	-	-	49	0	0	50	19	38	27	4	14.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	2.031536533	1.015768267	2	1.742245614	1.742245614	1	NA	NA	0	NA	NA	1	4	NA	1	1	5.00E-31	1	0.00001	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	21	41531184	C	T	DSCAM	CCDS42929.1	r.?	-	-	intronic	44	0	0	26	18	69.2	32	7	21.9	139	0	0	117	48	41	153	40	26.1	3.64E-44	TRUE	TRUE	3.319395774	5	3	4	0	1	0.680604226	1	3	NA	1	NA	0.319395774	NA	3.675496925	1.225165642	3	2.578052632	0.859350877	3	2.177678814	1.088839407	2	3.072473684	1.024157895	3	4	3	1	1	5.74E-36	4.73E-78	2.36E-10	5.77E-56	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	2	41541005	G	A	-	-	-	-	-	-	39	0	0	86	11	12.8	42	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	1.022978044	1.022978044	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	8.47E-13	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	41617775	G	A	OIP5	CCDS10074.1	r.?	-	-	intronic	15	0	0	22	8	36.4	26	2	7.7	2	0	0	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.598654474	2	1	1	1	1	0.401345526	NA	2	NA	1	NA	0.598654474	1.817093812	0.908546906	2	0.721534991	0.721534991	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.17E-13	1	0.007502227	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	41620602	A	T	-	-	-	-	-	-	51	1	2	27	14	51.9	22	8	36.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.071856287	1.035928144	2	3.192982456	1.596491228	2	NA	NA	1	NA	NA	1	4	NA	0.225579006	1	1.15E-25	1	1.17E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	41683981	G	A	CASK	CCDS48095.1	r.?	-	-	intronic	47	0	0	63	8	12.7	35	5	14.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6.241955165	4.32434803	4	2	2	2	0.758044835	0.67565197	4	3	3	2	0.241955165	0.32434803	1.045714334	1.045714334	1	1.586767733	1.586767733	1	NA	NA	0	NA	NA	0	4	NA	1	1	1.18E-09	1	0.000000895	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	178847560	G	T	-	-	-	-	-	-	8	0	0	18	5	27.8	17	8	47.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	3	3	3	3	1	1	NA	NA	NA	NA	NA	NA	2.221780439	2.221780439	1	6.015578947	2.005192982	3	NA	NA	1	NA	NA	1	4	NA	1	1	2.54E-08	1	9.12E-15	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	41712357	C	T	CASK	CCDS48095.1	r.?	-	-	intronic	44	0	0	65	6	9.2	40	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	6.241955165	4.32434803	4	2	2	2	0.758044835	0.67565197	4	3	3	2	0.241955165	0.32434803	0.757525344	0.757525344	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	0.000001	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	41724959	C	A	INHBA	CCDS5464.1	r.5817g>u	c.?	p.?	3'UTR variant	52	0	0	85	10	11.8	45	2	4.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	10.19154907	8.289880778	8	6	2	2	0.808450931	0.710119222	8	6	3	3	0.191549069	0.289880778	1.437660674	1.437660674	1	0.662719667	0.662719667	1	NA	NA	1	NA	NA	0	4	NA	1	1	2.17E-11	1	0.021467209	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	2485726	C	A	-	-	-	-	-	-	42	0	0	65	5	7.7	42	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.236173977	5.609750478	2	3	2	2	0.763826023	0.390249522	3	3	2	3	0.236173977	0.609750478	0.479570626	0.479570626	1	0	0	1	NA	NA	0	NA	NA	0	3	NA	1	1	0.0000201	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	41751107	T	A	CASK	CCDS48095.1	r.?	-	-	intronic	62	0	0	55	40	72.7	39	7	17.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6.241955165	4.32434803	4	2	2	2	0.758044835	0.67565197	4	3	3	2	0.241955165	0.32434803	5.986097014	1.496524253	4	1.986233736	0.993116868	2	NA	NA	1	NA	NA	0	4	NA	1	1	1.01E-79	1	1.04E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	41778032	C	A	OXCT1	CCDS3937.1	r.?	-	-	intronic	56	0	0	29	17	58.6	31	6	19.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.339321357	1.169660679	2	1.701754386	1.701754386	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.74E-32	1	1.03E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	41789078	C	T	MYST3	CCDS6124.1	r.7204g>a	c.?	p.?	3'UTR variant	37	0	0	23	10	43.5	28	2	7.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1	2.620991218	1	2	0	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.301526946	1.301526946	1	0.666897394	0.666897394	1	NA	NA	0	NA	NA	0	4	NA	1	1	1.05E-17	1	0.008668191	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	41845564	A	G	-	-	-	-	-	-	51	1	2	96	14	14.6	36	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	10.19154907	8.289880778	8	6	2	2	0.808450931	0.710119222	8	6	3	3	0.191549069	0.289880778	1.778800495	0.983604512	1.808450931	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	0.225579006	1	9.96E-17	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	41910569	G	C	CCND3	CCDS47426.1	r.?	-	-	intronic	30	0	0	55	17	30.9	36	5	13.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	3.588049503	2	2	2	1	1	0.411950497	NA	2	NA	2	NA	0.588049503	1.851532934	0.925766467	2	1.440037127	1.440037127	1	NA	NA	1	NA	NA	0	4	NA	1	1	4.35E-26	1	0.00000104	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	3836318	C	A	-	-	-	-	-	-	46	0	0	51	5	9.8	37	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.236173977	5.609750478	2	3	2	2	0.763826023	0.390249522	3	3	2	3	0.236173977	0.609750478	0.610362615	0.610362615	1	0	0	1	NA	NA	0	NA	NA	0	3	NA	1	1	0.00000606	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	41944198	T	A	-	-	-	-	-	-	46	0	0	108	13	12	48	1	2.1	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	10.19154907	8.289880778	8	6	2	2	0.808450931	0.710119222	8	6	3	3	0.191549069	0.289880778	1.462027804	1.462027804	1	0.316298023	NA	0	NA	NA	0	NA	NA	0	NA	NA	1	1	1.62E-14	1	0.213845552	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	4952806	C	T	CDYL	CCDS47364.1	r.?	-	-	intronic	29	0	0	45	10	22.2	24	2	8.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.236173977	5.609750478	2	3	2	2	0.763826023	0.390249522	3	3	2	3	0.236173977	0.609750478	1.382658168	1.382658168	1	1.027679465	1.027679465	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.66E-14	1	0.006413403	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	41950425	C	G	EDN2	CCDS462.1	r.?	-	-	upstream	21	0	0	45	14	31.1	12	3	25	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.552516966	0.776258483	2	2.942982456	2.942982456	1	NA	NA	0	NA	NA	1	4	NA	1	1	8.81E-22	1	0.0000266	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	41954693	G	A	C19orf69	CCDS46085.1	r.?	-	-	downstream	39	0	0	25	5	20	35	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.7646161	6	2	3	2	3	0.2353839	1	3	NA	2	NA	0.7646161	NA	1.351326414	1.351326414	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	0.000000153	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	41979403	C	T	AC011526.1	CCDS4419.1	r.?	-	-	intronic	60	0	0	59	15	25.4	39	6	15.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.7646161	6	2	3	2	3	0.2353839	1	3	NA	2	NA	0.7646161	NA	1.716184545	0.972554056	1.7646161	1.966877193	1.966877193	1	NA	NA	0	NA	NA	1	4	NA	1	1	9.90E-22	1	4.43E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	41985468	T	A	-	-	-	-	-	-	39	0	0	78	6	7.7	35	0	0	208	0	0	278	8	2.9	155	0	0	1	FALSE	FALSE	10.19154907	8.289880778	8	6	2	2	0.808450931	0.710119222	8	6	3	3	0.191549069	0.289880778	0.938134508	0.938134508	1	0	NA	0	0.353323386	0.353323386	1	0	NA	0	NA	NA	1	1	0.00000295	0.0000947	1	1	YES	1_1	0_0	somatic	custom.pulldown.HiSeq
PD9852b	2	42021377	A	G	-	-	-	-	-	-	34	0	0	48	7	14.6	43	2	4.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	1.166834331	1.166834331	1	0.600280702	0.600280702	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.81E-09	1	0.019709573	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	42049539	C	A	-	-	-	-	-	-	55	0	0	58	10	17.2	47	1	2.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5	5	3	3	2	2	1	1	NA	NA	NA	NA	NA	NA	1.202626747	1.202626747	1	0.247210526	0.247210526	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.10E-13	1	0.209895027	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	42064573	G	A	-	-	-	-	-	-	51	0	0	75	15	20	55	10	18.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	1.598403194	0.799201597	2	2.324491228	1.162245614	2	NA	NA	1	NA	NA	1	4	NA	1	1	5.25E-20	1	2.33E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	21	42123466	C	A	DSCAM	CCDS42929.1	r.?	-	-	intronic	41	0	0	35	19	54.3	24	11	45.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.319395774	5	3	4	0	1	0.680604226	1	3	NA	1	NA	0.319395774	NA	2.884096576	0.961365525	3	5.39154386	1.347885965	4	NA	NA	0	NA	NA	1	4	NA	1	1	7.18E-35	1	1.15E-19	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	42191922	A	T	CEACAM7	CCDS12583.1	r.?	-	-	intronic	16	0	0	53	8	15.1	43	2	4.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.7646161	6	2	3	2	3	0.2353839	1	3	NA	2	NA	0.7646161	NA	1.020251442	1.020251442	1	0.600280702	0.600280702	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.83E-10	1	0.019709573	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	42207893	A	T	-	-	-	-	-	-	25	0	0	40	16	40	29	5	17.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.996806387	0.998403194	2	1.68077193	1.68077193	1	NA	NA	1	NA	NA	1	4	NA	1	1	8.56E-27	1	0.000000336	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	42217234	A	G	-	-	-	-	-	-	40	0	0	62	41	66.1	36	12	33.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6.241955165	4.32434803	4	2	2	2	0.758044835	0.67565197	4	3	3	2	0.241955165	0.32434803	5.442654919	1.36066373	4	3.695060526	1.589719129	2.32434803	NA	NA	1	NA	NA	0	4	NA	1	1	7.56E-79	1	2.73E-19	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	6669417	A	G	-	-	-	-	-	-	51	0	0	60	23	38.3	44	12	27.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.236173977	5.609750478	2	3	2	2	0.763826023	0.390249522	3	3	2	3	0.236173977	0.609750478	2.385396749	1.066731289	2.236173977	3.380198723	1.126732908	3	NA	NA	0	NA	NA	1	4	NA	1	1	2.33E-37	1	4.44E-18	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	42236940	A	T	TRERF1	CCDS4867.1	r.952u>a	c.389T>A	p.I130N	missense	17	0	0	36	11	30.6	27	3	11.1	110	0	0	83	23	27.7	60	3	5	0.022420165	TRUE	TRUE	4	3.588049503	2	2	2	1	1	0.411950497	NA	2	NA	2	NA	0.588049503	1.833556886	0.916778443	2	1.149957705	1.149957705	1	1.659788423	0.829894212	2	0.517998966	0.517998966	1	4	3	1	1	2.62E-17	1.64E-33	0.000334187	0.003458198	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	14	42241954	G	A	LRFN5	CCDS9678.1	r.?	-	-	intronic	51	0	0	39	14	35.9	33	8	24.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.433133733	1.433133733	1	2.122807018	1.061403509	2	NA	NA	1	NA	NA	1	4	NA	1	1	8.19E-23	1	4.85E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	42249614	C	A	TRERF1	CCDS4867.1	r.?	-	-	intronic	38	0	0	42	10	23.8	29	5	17.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	3.588049503	2	2	2	1	1	0.411950497	NA	2	NA	2	NA	0.588049503	1.4260998	1.4260998	1	1.781916444	1.781916444	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.24E-14	1	0.000000336	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	42289048	C	T	-	-	-	-	-	-	38	0	0	52	7	13.5	29	2	6.9	1	0	0	0	0	NA	0	0	NA	1	TRUE	FALSE	6.241955165	4.32434803	4	2	2	2	0.758044835	0.67565197	4	3	3	2	0.241955165	0.32434803	1.111586103	1.111586103	1	0.765643172	0.765643172	1	NA	NA	1	NA	NA	0	4	NA	1	1	8.58E-09	1	0.009279585	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	42290806	A	C	SLC20A2	CCDS6132.1	r.?	-	-	intronic	59	0	0	24	9	37.5	35	3	8.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1	2.620991218	1	2	0	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.122005988	1.122005988	1	0.80779121	0.80779121	1	NA	NA	0	NA	NA	0	4	NA	1	1	2.39E-15	1	0.000725791	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	9681801	G	T	OFCC1	ENST00000460363	r.?	-	-	intronic	50	0	0	47	13	27.7	51	9	17.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.236173977	5.609750478	2	3	2	2	0.763826023	0.390249522	3	3	2	3	0.236173977	0.609750478	1.725208615	0.862604307	2	2.179175733	0.911693827	2.390249522	NA	NA	0	NA	NA	1	4	NA	1	1	1.47E-19	1	4.92E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	42321333	C	T	KIAA0564	CCDS41881.1	r.?	-	-	intronic	41	0	0	40	24	60	33	11	33.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.395209581	1.19760479	2	2.921052632	1.460526316	2	NA	NA	1	NA	NA	1	4	NA	1	1	3.47E-45	1	8.54E-18	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	42338750	C	T	PLA2G4E	ENST00000399518	r.?	-	-	intronic	45	0	0	43	18	41.9	35	9	25.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.598654474	2	1	1	1	1	0.401345526	NA	2	NA	1	NA	0.598654474	2.091654691	1.045827345	2	2.408240165	1.50641693	1.598654474	NA	NA	1	NA	NA	0	4	NA	1	1	2.06E-30	1	1.23E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	42351776	T	C	LRFN5	CCDS9678.1	r.?	-	-	intronic	31	0	0	32	17	53.1	19	3	15.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.119760479	1.05988024	2	1.385964912	1.385964912	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.02E-31	1	0.000114071	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	42355039	C	A	-	-	-	-	-	-	50	0	0	90	7	7.8	57	7	12.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	10.19154907	8.289880778	8	6	2	2	0.808450931	0.710119222	8	6	3	3	0.191549069	0.289880778	0.950318073	0.950318073	1	1.852602704	1.852602704	1	NA	NA	1	NA	NA	0	4	NA	1	1	0.000000406	1	1.66E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	42476615	C	G	-	-	-	-	-	-	13	0	0	21	7	33.3	15	3	20	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1	2.620991218	1	2	0	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0.996341317	0.996341317	1	1.878584208	1.878584208	1	NA	NA	0	NA	NA	0	4	NA	1	1	8.54E-12	1	0.0000544	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	42489527	G	C	-	-	-	-	-	-	67	0	0	34	15	44.1	48	11	22.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	2.201479042	1.100739521	2	2.69577193	0.898590643	3	NA	NA	0	NA	NA	1	4	NA	1	1	5.18E-26	1	9.31E-16	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	42503921	C	A	-	-	-	-	-	-	47	0	0	56	8	14.3	32	5	15.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6.241955165	4.32434803	4	2	2	2	0.758044835	0.67565197	4	3	3	2	0.241955165	0.32434803	1.177457872	1.177457872	1	1.731019345	1.731019345	1	NA	NA	1	NA	NA	0	4	NA	1	1	4.48E-10	1	0.000000562	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	42584295	G	T	UBR2	CCDS4870.1	r.?	-	-	intronic	46	0	0	56	7	12.5	29	1	3.4	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	4	3.588049503	2	2	2	1	1	0.411950497	NA	2	NA	2	NA	0.588049503	0.749001996	0.749001996	1	0.352239297	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	1.46E-08	1	0.135292269	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	42640665	G	C	TOX2	CCDS42875.1	r.?	-	-	intronic	35	0	0	45	15	33.3	32	2	6.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	5	2	3	2	2	1	1	NA	NA	NA	NA	NA	NA	1.995341317	0.997670659	2	0.729859649	0.729859649	1	NA	NA	0	NA	NA	1	4	NA	1	1	9.14E-24	1	0.011224977	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	42757244	C	A	-	-	-	-	-	-	54	0	0	41	4	9.8	37	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.489217565	0.489217565	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.0000546	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	42760610	C	T	KIAA0240	CCDS34451.1	r.?	-	-	intronic	45	0	0	52	15	28.8	30	2	6.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	3.588049503	2	2	2	1	1	0.411950497	NA	2	NA	2	NA	0.588049503	1.725700599	0.862850299	2	0.694118615	0.694118615	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.15E-22	1	0.009909649	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	42780543	G	A	MTA3	ENST00000405592	r.?	-	-	intronic	24	0	0	51	17	33.3	24	3	12.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	2.661341317	0.887113772	3	1.596491228	1.596491228	1	NA	NA	1	NA	NA	1	4	NA	1	1	9.59E-27	1	0.000233853	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	21	42858353	A	T	TMPRSS2	CCDS33564.1	r.?	-	-	intronic	17	0	0	30	12	40	28	7	25	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.319395774	5	3	4	0	1	0.680604226	1	3	NA	1	NA	0.319395774	NA	2.124564697	1.062282348	2	2.942982456	0.980994152	3	NA	NA	0	NA	NA	1	4	NA	1	1	1.94E-20	1	8.44E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	42862654	A	T	-	-	-	-	-	-	47	0	0	92	20	21.7	52	6	11.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	10.19154907	8.289880778	8	6	2	2	0.808450931	0.710119222	8	6	3	3	0.191549069	0.289880778	2.643833613	0.941385012	2.808450931	1.732108219	1.732108219	1	NA	NA	1	NA	NA	0	4	NA	1	1	5.65E-27	1	0.000000261	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	42890380	T	C	-	-	-	-	-	-	45	0	0	58	19	32.8	37	7	18.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.297222263	4	2	2	2	2	0.702777737	1	3	NA	2	NA	0.297222263	NA	2.06287014	1.03143507	2	2.035894737	1.017947368	2	NA	NA	1	NA	NA	0	4	NA	1	1	1.50E-29	1	7.05E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	9986699	C	A	OFCC1	ENST00000485268	r.?	-	-	intronic	45	0	0	62	16	25.8	58	5	8.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.236173977	5.609750478	2	3	2	2	0.763826023	0.390249522	3	3	2	3	0.236173977	0.609750478	1.606873006	0.803436503	2	1.064824506	1.064824506	1	NA	NA	0	NA	NA	0	4	NA	1	1	3.36E-23	1	0.0000115	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	42923459	C	T	-	-	-	-	-	-	49	0	0	28	15	53.6	25	4	16	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.139720559	1.069860279	2	1.403508772	1.403508772	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.07E-27	1	0.00000727	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	42945068	G	T	PEX6	CCDS4877.1	r.?	-	-	intronic	30	0	0	32	13	40.6	30	4	13.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	3.588049503	2	2	2	1	1	0.411950497	NA	2	NA	2	NA	0.588049503	2.432758483	1.216379242	2	1.377877251	1.377877251	1	NA	NA	1	NA	NA	0	4	NA	1	1	3.88E-22	1	0.0000154	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	42972625	G	A	PSMA2	CCDS5467.1	r.?	-	-	upstream	40	0	0	76	47	61.8	25	10	40	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	10.19154907	8.289880778	8	6	2	2	0.808450931	0.710119222	8	6	3	3	0.191549069	0.289880778	7.529443193	0.964268491	7.808450931	6.024724241	1.004120707	6	NA	NA	1	NA	NA	0	4	NA	1	1	5.08E-88	1	2.98E-17	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	43035512	C	A	-	-	-	-	-	-	36	0	0	47	20	42.6	22	2	9.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.297222263	4	2	2	2	2	0.702777737	1	3	NA	2	NA	0.297222263	NA	2.679215486	1.166284834	2.297222263	0.980245614	0.980245614	1	NA	NA	1	NA	NA	0	4	NA	1	1	8.18E-34	1	0.005403392	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	11423702	C	A	-	-	-	-	-	-	49	0	0	44	15	34.1	41	9	22	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.293868134	5.486552635	2	3	2	2	0.706131866	0.513447365	3	3	2	3	0.293868134	0.486552635	2.143486479	0.934441892	2.293868134	2.696866141	1.072974982	2.513447365	NA	NA	0	NA	NA	0	4	NA	1	1	6.12E-24	1	5.92E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	43040817	G	C	-	-	-	-	-	-	46	0	0	30	15	50	31	5	16.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.996007984	0.998003992	2	1.412280702	1.412280702	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.41E-27	1	0.000000476	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	43062415	A	G	-	-	-	-	-	-	33	0	0	52	17	32.7	32	2	6.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.297222263	4	2	2	2	2	0.702777737	1	3	NA	2	NA	0.297222263	NA	2.056580902	1.028290451	2	0.667859649	0.667859649	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.42E-26	1	0.011224977	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	43195433	G	C	CUL9	CCDS4890.1	r.?	-	-	downstream	48	0	0	57	15	26.3	32	8	25	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	3.588049503	2	2	2	1	1	0.411950497	NA	2	NA	2	NA	0.588049503	1.5759002	0.7879501	2	2.589994832	1.294997416	2	NA	NA	1	NA	NA	0	4	NA	1	1	5.53E-22	1	3.69E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	22	43215121	G	T	ARFGAP3	CCDS14042.1	r.?	-	-	intronic	27	0	0	26	12	46.2	30	8	26.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.292921926	5	3	4	0	1	0.707078074	1	3	NA	1	NA	0.292921926	NA	2.441641307	0.901947133	2.707078074	3.143105263	1.047701754	3	NA	NA	0	NA	NA	1	4	NA	1	1	2.21E-21	1	2.07E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	43220034	G	A	HECW1	CCDS5469.2	r.?	-	-	intronic	21	0	0	92	21	22.8	41	8	19.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	10.19154907	8.289880778	8	6	2	2	0.808450931	0.710119222	8	6	3	3	0.191549069	0.289880778	2.777852828	0.989104989	2.808450931	2.937053067	0.979017689	3	NA	NA	1	NA	NA	0	4	NA	1	1	9.72E-29	1	3.22E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	43223247	T	A	HECW1	CCDS5469.2	r.?	-	-	intronic	33	0	0	91	8	8.8	50	2	4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	10.19154907	8.289880778	8	6	2	2	0.808450931	0.710119222	8	6	3	3	0.191549069	0.289880778	1.072153723	1.072153723	1	0.602472424	0.602472424	1	NA	NA	1	NA	NA	0	4	NA	1	1	0.000000023	1	0.026131524	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	43273092	C	G	-	-	-	-	-	-	52	0	0	62	10	16.1	36	6	16.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6.241955165	4.32434803	4	2	2	2	0.758044835	0.67565197	4	3	3	2	0.241955165	0.32434803	1.325669352	1.325669352	1	1.853078402	1.853078402	1	NA	NA	1	NA	NA	0	4	NA	1	1	8.29E-13	1	2.68E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	19920308	G	T	-	-	-	-	-	-	55	0	0	61	29	47.5	28	9	32.1	141	0	0	344	115	33.4	210	40	19	3.38E-38	TRUE	TRUE	4.293868134	5.486552635	2	3	2	2	0.706131866	0.513447365	3	3	2	3	0.293868134	0.486552635	2.985794949	1.301641931	2.293868134	3.93497287	1.311657623	3	2.09948529	1.049742645	2	2.329111667	0.926660212	2.513447365	4	3	1	1	3.48E-50	5.49E-172	1.24E-14	7.08E-50	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	20	43319795	C	T	-	-	-	-	-	-	38	0	0	33	15	45.5	35	9	25.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	5	2	3	2	2	1	1	NA	NA	NA	NA	NA	NA	2.726367265	1.363183633	2	3.025385965	1.008461988	3	NA	NA	0	NA	NA	1	4	NA	1	1	2.91E-26	1	1.23E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	43325106	G	A	ZNF318	CCDS4895.2	r.1024c>u	c.946C>T	p.R316*	nonsense	55	0	0	57	26	45.6	36	4	11.1	216	0	0	154	51	33.1	139	25	18	8.11E-24	TRUE	TRUE	4	3.588049503	2	2	2	1	1	0.411950497	NA	2	NA	2	NA	0.588049503	2.732359281	1.366179641	2	1.149957705	1.149957705	1	1.983357285	0.991678643	2	1.864796279	0.93239814	2	4	3	1	1	1.57E-44	5.38E-77	0.0000324	4.19E-31	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	11	43341254	C	T	API5	CCDS44572.1	r.?	-	-	intronic	40	0	0	39	17	43.6	27	7	25.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	2.176518962	1.088259481	2	2.530929825	1.265464912	2	NA	NA	1	NA	NA	1	4	NA	1	1	3.51E-29	1	6.36E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	43378396	C	T	-	-	-	-	-	-	42	0	0	56	29	51.8	38	4	10.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	3.588049503	2	2	2	1	1	0.411950497	NA	2	NA	2	NA	0.588049503	3.103864271	1.551932136	2	1.087797829	1.087797829	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.21E-51	1	0.0000403	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	43384042	A	C	-	-	-	-	-	-	26	0	0	33	13	39.4	29	5	17.2	0	0	NA	2	0	0	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.572854291	0.786427146	2	1.50877193	1.50877193	1	0	0	1	NA	NA	1	4	NA	1	1	6.37E-22	1	0.000000336	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	21010461	A	G	CDKAL1	CCDS4546.1	r.?	-	-	intronic	52	0	0	45	12	26.7	39	6	15.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.293868134	5.486552635	2	3	2	2	0.706131866	0.513447365	3	3	2	3	0.293868134	0.486552635	1.678331055	0.839165528	2	1.887806299	1.887806299	1	NA	NA	0	NA	NA	0	4	NA	1	1	6.03E-18	1	4.43E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	43508095	G	C	KIAA1632	CCDS11926.2	r.?	-	-	intronic	34	0	0	32	7	21.9	16	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.874251497	0.874251497	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	2.36E-10	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	43520628	G	A	YWHAB	CCDS13339.1	r.?	-	-	intronic	49	0	0	44	8	18.2	32	1	3.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	5	2	3	2	2	1	1	NA	NA	NA	NA	NA	NA	1.090546906	1.090546906	1	0.364929825	0.364929825	1	NA	NA	0	NA	NA	1	4	NA	1	1	5.90E-11	1	0.14819814	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	43528794	G	T	PSG11	CCDS12614.2	r.?	-	-	intronic	36	0	0	40	12	30	44	6	13.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.7646161	6	2	3	2	3	0.2353839	1	3	NA	2	NA	0.7646161	NA	2.02698962	1.01349481	2	1.736982456	1.736982456	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.20E-18	1	9.37E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	43542693	C	G	PSG1	ENST00000449000	r.?	-	-	intronic	52	0	0	43	8	18.6	35	3	8.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.7646161	6	2	3	2	3	0.2353839	1	3	NA	2	NA	0.7646161	NA	1.256733565	1.256733565	1	1.098385965	1.098385965	1	NA	NA	0	NA	NA	1	4	NA	1	1	4.85E-11	1	0.000725791	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	43600607	G	A	-	-	-	-	-	-	46	0	0	39	6	15.4	27	1	3.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.768770459	0.768770459	1	0.361561404	0.361561404	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.43E-08	1	0.126579904	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	24224379	G	A	DCDC2	CCDS4550.1	r.?	-	-	intronic	44	0	0	55	15	27.3	47	11	23.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.293868134	5.486552635	2	3	2	2	0.706131866	0.513447365	3	3	2	3	0.293868134	0.486552635	1.71604636	0.85802318	2	2.868484896	0.956161632	3	NA	NA	0	NA	NA	0	4	NA	1	1	3.01E-22	1	7.21E-16	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	43667583	T	C	-	-	-	-	-	-	35	0	0	28	6	21.4	12	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	3	3	1	1	1	1	NA	NA	NA	NA	NA	NA	1.282291417	1.282291417	1	0	0	1	NA	NA	1	NA	NA	1	4	NA	1	1	5.36E-09	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	43668369	G	A	WDR65	CCDS479.1	r.?	-	-	intronic	21	0	0	39	21	53.8	27	4	14.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	2.685704591	1.342852295	2	1.742245614	1.742245614	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.73E-38	1	0.00001	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	43763675	T	C	-	-	-	-	-	-	38	0	0	43	12	27.9	45	11	24.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	5	2	3	2	2	1	1	NA	NA	NA	NA	NA	NA	1.671772455	0.835886228	2	2.872350877	0.957450292	3	NA	NA	0	NA	NA	1	4	NA	1	1	3.24E-18	1	4.24E-16	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	25335487	G	T	LRRC16A	ENST00000329474	r.?	-	-	intronic	52	0	0	41	5	12.2	43	6	14	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.293868134	5.486552635	2	3	2	2	0.706131866	0.513447365	3	3	2	3	0.293868134	0.486552635	0.76687786	0.76687786	1	1.716187544	1.716187544	1	NA	NA	0	NA	NA	0	4	NA	1	1	0.00000202	1	8.13E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	43855581	T	A	-	-	-	-	-	-	63	0	0	25	10	40	28	1	3.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.596806387	1.596806387	1	0.315789474	0.315789474	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.98E-17	1	0.130947004	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	43860131	G	A	-	-	-	-	-	-	22	0	0	45	24	53.3	35	11	31.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6.241955165	4.32434803	4	2	2	2	0.758044835	0.67565197	4	3	3	2	0.241955165	0.32434803	4.388706614	1.097176654	4	3.484231246	1.499014434	2.32434803	NA	NA	1	NA	NA	0	4	NA	1	1	2.03E-43	1	1.82E-17	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	17	43872636	A	C	CRHR1	CCDS45712.1	r.?	-	-	intronic	36	0	0	27	17	63	22	5	22.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.51497006	1.25748503	2	1.99122807	1.99122807	1	NA	NA	1	NA	NA	1	4	NA	1	1	6.14E-33	1	7.67E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	27037638	C	A	-	-	-	-	-	-	45	0	0	48	5	10.4	38	1	2.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.293868134	5.486552635	2	3	2	2	0.706131866	0.513447365	3	3	2	3	0.293868134	0.486552635	0.653731947	0.653731947	1	0.318720544	0.318720544	1	NA	NA	0	NA	NA	1	4	NA	1	1	0.00000447	1	0.173434892	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	30382447	T	C	-	-	-	-	-	-	37	0	0	40	12	30	38	11	28.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.293868134	5.486552635	2	3	2	2	0.706131866	0.513447365	3	3	2	3	0.293868134	0.486552635	1.885765231	0.942882615	2	3.542701431	1.180900477	3	NA	NA	0	NA	NA	1	4	NA	1	1	1.20E-18	1	5.19E-17	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	43954415	G	A	-	-	-	-	-	-	71	0	0	39	6	15.4	33	1	3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.768770459	0.768770459	1	0.293157895	0.293157895	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.43E-08	1	0.15245715	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	22	43965099	A	C	EFCAB6	CCDS14049.1	r.?	-	-	intronic	21	0	0	44	4	9.1	13	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.292921926	5	3	4	0	1	0.707078074	1	3	NA	1	NA	0.292921926	NA	0.480929348	0.480929348	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	0.0000723	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	44011662	C	A	-	-	-	-	-	-	51	0	0	36	11	30.6	30	1	3.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.527556886	1.527556886	1	0.322473684	0.322473684	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.62E-17	1	0.139615808	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	44030094	A	G	-	-	-	-	-	-	49	0	0	39	6	15.4	36	4	11.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5	5	3	3	2	2	1	1	NA	NA	NA	NA	NA	NA	1.076770459	1.076770459	1	1.306684211	1.306684211	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.43E-08	1	0.0000324	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	44037897	G	A	-	-	-	-	-	-	57	0	0	46	18	39.1	38	10	26.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.951878244	0.975939122	2	2.570017544	1.285008772	2	NA	NA	1	NA	NA	1	4	NA	1	1	9.41E-30	1	4.06E-15	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	44042927	G	C	XRCC1	CCDS12624.1	r.?	-	-	downstream	50	0	0	38	17	44.7	35	6	17.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.7646161	6	2	3	2	3	0.2353839	1	3	NA	2	NA	0.7646161	NA	3.020214534	1.0924535	2.7646161	2.184	1.092	2	NA	NA	0	NA	NA	1	4	NA	1	1	1.99E-29	1	2.24E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	44044374	C	A	RNF165	CCDS32823.1	r.?	-	-	downstream	54	0	0	31	17	54.8	31	7	22.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.18762475	1.093812375	2	1.98245614	0.99122807	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.89E-31	1	1.85E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	44051540	C	T	ABCG5	CCDS1814.1	r.1076g>a	c.936G>A	p.K312K	silent	58	0	0	65	22	33.8	64	11	17.2	191	0	0	171	57	33.3	98	14	14.3	1.49E-12	TRUE	TRUE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	2.701301397	0.900433799	3	2.19677193	1.098385965	2	2.661341317	0.887113772	3	1.826385965	0.913192982	2	4	3	1	1	2.36E-34	4.76E-86	2.85E-14	1.34E-16	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	9	44118738	G	T	-	-	-	-	-	-	20	0	0	40	11	27.5	5	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	3	3	1	1	1	1	NA	NA	NA	NA	NA	NA	1.647804391	1.647804391	1	0	0	1	NA	NA	1	NA	NA	1	4	NA	1	1	9.88E-17	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	44152552	C	G	WDR76	CCDS10106.1	r.?	-	-	intronic	48	0	0	38	5	13.2	36	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3.293619843	2	2	1	1	1	0.706380157	NA	3	NA	1	NA	0.293619843	0.658946108	0.658946108	1	0	0	1	NA	NA	0	NA	NA	0	3	NA	1	1	0.00000137	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	21	44173644	T	A	PDE9A	CCDS13690.1	r.?	-	-	intronic	32	0	0	29	4	13.8	21	1	4.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.319395774	5	3	4	0	1	0.680604226	1	3	NA	1	NA	0.319395774	NA	0.73297482	0.73297482	1	0.565052632	0.565052632	1	NA	NA	0	NA	NA	1	4	NA	1	1	0.0000134	1	0.099912572	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	44183231	C	T	-	-	-	-	-	-	54	0	0	41	8	19.5	24	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.778443114	0.778443114	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	3.22E-11	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	22	44222986	C	G	SULT4A1	CCDS14051.1	r.?	-	-	intronic	48	0	0	33	18	54.5	29	6	20.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.292921926	5	3	4	0	1	0.707078074	1	3	NA	1	NA	0.292921926	NA	2.880291152	0.960097051	3	2.436789474	0.812263158	3	NA	NA	0	NA	NA	1	4	NA	1	1	3.68E-33	1	6.72E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	44230883	A	G	-	-	-	-	-	-	49	0	0	39	9	23.1	28	6	21.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5	5	3	3	2	2	1	1	NA	NA	NA	NA	NA	NA	1.615155689	1.615155689	1	2.519192982	0.839730994	3	NA	NA	1	NA	NA	1	4	NA	1	1	3.62E-13	1	5.36E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	48239631	G	T	-	-	-	-	-	-	58	0	0	52	10	19.2	33	2	6.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	3.588049503	2	2	2	1	1	0.411950497	NA	2	NA	2	NA	0.588049503	1.150467066	1.150467066	1	0.631958739	0.631958739	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.28E-13	1	0.011909843	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	44237071	C	T	TMEM151B	CCDS47437.1	r.?	-	-	upstream	38	0	0	42	20	47.6	25	2	8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	3.588049503	2	2	2	1	1	0.411950497	NA	2	NA	2	NA	0.588049503	2.852199601	1.4260998	2	0.828798346	0.828798346	1	NA	NA	1	NA	NA	0	4	NA	1	1	4.41E-35	1	0.006948068	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	44260759	C	T	-	-	-	-	-	-	53	0	0	37	5	13.5	28	1	3.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5	5	3	3	2	2	1	1	NA	NA	NA	NA	NA	NA	0.943922156	0.943922156	1	0.423789474	0.423789474	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.00000119	1	0.130947004	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	44299257	A	C	KCTD8	CCDS3467.1	r.?	-	-	intronic	52	0	0	53	12	22.6	32	5	15.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.128195609	1.128195609	1	1.524421053	1.524421053	1	NA	NA	1	NA	NA	1	4	NA	1	1	5.39E-17	1	0.000000562	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	44322534	G	T	CAMK2B	CCDS5483.1	r.?	-	-	intronic	18	0	0	73	36	49.3	32	7	21.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	10.19154907	8.289880778	8	6	2	2	0.808450931	0.710119222	8	6	3	3	0.191549069	0.289880778	6.006497563	1.001082927	6	3.298536522	1.099512174	3	NA	NA	1	NA	NA	0	4	NA	1	1	1.06E-62	1	2.36E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	44379178	G	T	-	-	-	-	-	-	29	0	0	57	5	8.8	29	2	6.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	0.703297405	0.703297405	1	0.881263158	0.881263158	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.0000105	1	0.009279585	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	44486264	T	C	NUDCD3	CCDS5490.2	r.?	-	-	intronic	26	0	0	94	12	12.8	39	7	17.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	10.19154907	8.289880778	8	6	2	2	0.808450931	0.710119222	8	6	3	3	0.191549069	0.289880778	1.559496325	1.559496325	1	2.696064098	0.994813835	2.710119222	NA	NA	0	NA	NA	0	4	NA	1	1	7.98E-14	1	1.04E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	44504486	A	G	-	-	-	-	-	-	62	0	0	59	12	20.3	53	2	3.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.216379242	1.216379242	1	0.409333333	0.409333333	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.20E-16	1	0.029108399	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	44519157	G	T	ZNF230	CCDS33044.1	r.?	-	-	downstream	44	0	0	34	10	29.4	22	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.7646161	6	2	3	2	3	0.2353839	1	3	NA	2	NA	0.7646161	NA	1.986449828	0.993224914	2	0	0	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.15E-15	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	44553367	G	T	-	-	-	-	-	-	56	0	0	58	13	22.4	27	1	3.7	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	4	3.588049503	2	2	2	1	1	0.411950497	NA	2	NA	2	NA	0.588049503	1.342211577	1.342211577	1	0.383319235	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	3.12E-18	1	0.126579904	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	49566345	T	A	-	-	-	-	-	-	22	0	0	31	5	16.1	15	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	4	3.588049503	2	2	2	1	1	0.411950497	NA	2	NA	2	NA	0.588049503	0.964714571	0.964714571	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	0.000000476	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	44649440	C	T	-	-	-	-	-	-	22	0	0	58	37	63.8	36	9	25	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6.241955165	4.32434803	4	2	2	2	0.758044835	0.67565197	4	3	3	2	0.241955165	0.32434803	5.253273583	1.313318396	4	2.774069464	1.193482829	2.32434803	NA	NA	1	NA	NA	0	4	NA	1	1	2.20E-70	1	1.63E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	44682835	G	A	SLC12A5	CCDS46610.1	r.?	-	-	intronic	49	0	0	49	10	20.4	35	7	20	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	5	3	3	3	2	1	1	NA	NA	NA	NA	NA	NA	1.630371257	1.630371257	1	2.354385965	1.177192982	2	NA	NA	1	NA	NA	0	4	NA	1	1	6.72E-14	1	4.65E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	44683960	T	G	CASC4	CCDS10108.1	r.?	-	-	intronic	31	0	0	42	26	61.9	38	9	23.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3.293619843	2	2	1	1	1	0.706380157	NA	3	NA	1	NA	0.293619843	3.090057884	1.545028942	2	2.385535271	1.040074395	2.293619843	NA	NA	0	NA	NA	0	4	NA	1	1	2.30E-49	1	2.79E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	44689714	A	G	DMAP1	CCDS509.1	r.?	-	-	downstream	47	0	0	41	13	31.7	37	9	24.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.582469062	0.791234531	2	2.860578947	0.953526316	3	NA	NA	0	NA	NA	1	4	NA	1	1	1.89E-20	1	2.14E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	44734613	A	G	ZNF227	CCDS12636.1	r.?	-	-	intronic	42	0	0	43	9	20.9	33	2	6.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.7646161	6	2	3	2	3	0.2353839	1	3	NA	2	NA	0.7646161	NA	1.412136102	1.412136102	1	0.779087719	0.779087719	1	NA	NA	0	NA	NA	1	4	NA	1	1	9.45E-13	1	0.011909843	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	44743402	C	G	C2orf34	CCDS1820.1	r.?	-	-	intronic	38	0	0	80	7	8.8	47	5	10.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	0.703297405	0.703297405	1	1.353824561	1.353824561	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.00000018	1	0.00000402	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	44743896	C	T	-	-	-	-	-	-	70	0	0	31	6	19.4	34	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.968451098	0.968451098	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	1.03E-08	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	57458057	C	T	PRIM2	ENST00000425433	r.?	-	-	intronic	145	0	0	135	17	12.6	89	5	5.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	3.588049503	2	2	2	1	1	0.411950497	NA	2	NA	2	NA	0.588049503	0.754994012	0.754994012	1	0.580158842	0.580158842	1	NA	NA	1	NA	NA	0	4	NA	1	1	7.05E-19	1	0.0000915	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	44862790	C	T	SPG11	CCDS10112.1	r.6427g>a	c.6410G>A	p.R2137Q	missense	22	0	0	37	12	32.4	17	3	17.6	259	0	0	70	23	32.9	64	13	20.3	8.17E-14	TRUE	TRUE	3	3.293619843	2	2	1	1	1	0.706380157	NA	3	NA	1	NA	0.293619843	1.617413174	0.808706587	2	1.771536741	1.771536741	1	1.642373253	0.821186627	2	2.043306582	1.021653291	2	4	3	1	1	4.03E-19	1.70E-35	0.0000807	1.26E-17	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	12	44888661	C	T	-	-	-	-	-	-	24	0	0	50	13	26	35	4	11.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.297924152	1.297924152	1	1.114	1.114	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.65E-19	1	0.0000289	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	44916413	C	T	-	-	-	-	-	-	51	0	0	47	15	31.9	29	2	6.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.297222263	4	2	2	2	2	0.702777737	1	3	NA	2	NA	0.297222263	NA	2.006266996	1.003133498	2	0.743263158	0.743263158	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.97E-23	1	0.009279585	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	44927606	C	T	TGM4	CCDS2723.1	r.?	-	-	intronic	40	0	0	36	7	19.4	27	3	11.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5	5	3	3	2	2	1	1	NA	NA	NA	NA	NA	NA	1.356451098	1.356451098	1	1.306684211	1.306684211	1	NA	NA	1	NA	NA	1	4	NA	1	1	5.74E-10	1	0.000334187	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	44938382	A	G	C2orf34	CCDS1820.1	r.?	-	-	intronic	55	0	0	58	8	13.8	43	7	16.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	1.102898204	1.102898204	1	2.081824561	1.040912281	2	NA	NA	1	NA	NA	1	4	NA	1	1	5.99E-10	1	2.15E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	17	44938518	C	G	WNT9B	CCDS11506.1	r.?	-	-	intronic	24	0	0	35	6	17.1	20	1	5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.682634731	0.682634731	1	0.438596491	0.438596491	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.24E-08	1	0.09538952	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	57938305	C	A	-	-	-	-	-	-	57	0	0	57	9	15.8	40	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	4	3.588049503	2	2	2	1	1	0.411950497	NA	2	NA	2	NA	0.588049503	0.946738523	0.946738523	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	1.42E-11	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	62007923	C	T	-	-	-	-	-	-	51	0	0	50	5	10	33	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	4	3.588049503	2	2	2	1	1	0.411950497	NA	2	NA	2	NA	0.588049503	0.599201597	0.599201597	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	0.00000549	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	44991782	T	C	ZNF180	CCDS12639.1	r.?	-	-	intronic	30	0	0	42	20	47.6	25	6	24	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.7646161	6	2	3	2	3	0.2353839	1	3	NA	2	NA	0.7646161	NA	3.216156864	1.163328559	2.7646161	3.065263158	1.021754386	3	NA	NA	0	NA	NA	1	4	NA	1	1	4.41E-35	1	2.55E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	44997888	G	C	MYO1G	CCDS34629.1	r.?	-	-	downstream	32	0	0	132	19	14.4	51	4	7.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	10.19154907	8.289880778	8	6	2	2	0.808450931	0.710119222	8	6	3	3	0.191549069	0.289880778	1.754433365	0.970130478	1.808450931	1.174821227	1.174821227	1	NA	NA	0	NA	NA	0	4	NA	1	1	4.59E-22	1	0.000129466	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	45061579	T	G	CXorf36	CCDS48096.1	r.?	-	-	upstream	46	0	0	61	9	14.8	26	4	15.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6.241955165	4.32434803	4	2	2	2	0.758044835	0.67565197	4	3	3	2	0.241955165	0.32434803	1.218627728	1.218627728	1	1.70882679	1.70882679	1	NA	NA	1	NA	NA	0	4	NA	1	1	2.68E-11	1	0.00000856	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	63619202	G	A	-	-	-	-	-	-	47	0	0	25	19	76	25	7	28	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	3.033932136	1.516966068	2	2.456140351	1.228070175	2	NA	NA	1	NA	NA	1	4	NA	1	1	3.28E-39	1	3.47E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	45113038	A	C	-	-	-	-	-	-	53	0	0	61	12	19.7	32	1	3.1	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	6.241955165	4.32434803	4	2	2	2	0.758044835	0.67565197	4	3	3	2	0.241955165	0.32434803	1.622092313	1.622092313	1	0.343984613	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	3.39E-16	1	0.14819814	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	65535962	G	A	EYS	CCDS47445.1	r.?	-	-	intronic	45	0	0	32	19	59.4	31	11	35.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.371257485	1.185628743	2	3.114035088	1.557017544	2	NA	NA	1	NA	NA	1	4	NA	1	1	6.23E-36	1	3.77E-18	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	45195740	T	A	C1orf228	ENST00000458657	r.?	-	-	downstream	27	0	0	64	8	12.5	36	3	8.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6.392427913	5	5	3	1	2	0.607572087	1	5	NA	2	NA	0.392427913	NA	1.048055485	1.048055485	1	0.977070175	0.977070175	1	NA	NA	0	NA	NA	0	4	NA	1	1	1.35E-09	1	0.000788827	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	45195741	C	A	C1orf228	ENST00000458657	r.?	-	-	downstream	28	0	0	65	7	10.8	37	3	8.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6.392427913	5	5	3	1	2	0.607572087	1	5	NA	2	NA	0.392427913	NA	0.905519939	0.905519939	1	0.953526316	0.953526316	1	NA	NA	0	NA	NA	0	4	NA	1	1	4.22E-08	1	0.000855237	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	45195967	G	C	-	-	-	-	-	-	53	0	0	30	19	63.3	39	10	25.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.526946108	1.263473054	2	2.245614035	1.122807018	2	NA	NA	1	NA	NA	1	4	NA	1	1	9.89E-37	1	5.44E-15	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	65961796	C	A	EYS	CCDS47445.1	r.?	-	-	intronic	42	0	0	34	10	29.4	34	0	0	0	0	NA	0	0	NA	2	0	0	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.173652695	1.173652695	1	0	0	1	NA	NA	1	0	0	1	3	NA	1	1	1.15E-15	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	17	45235359	G	A	CDC27	CCDS45720.1	r.?	-	-	intronic	54	0	0	19	12	63.2	32	6	18.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.522954092	1.261477046	2	1.649122807	1.649122807	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.19E-23	1	1.27E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	67357726	G	T	-	-	-	-	-	-	43	0	0	27	5	18.5	23	1	4.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.738522954	0.738522954	1	0.377192982	0.377192982	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.00000023	1	0.108890944	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	45332520	A	T	-	-	-	-	-	-	51	0	0	83	25	30.1	45	6	13.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	2.405596806	0.801865602	3	1.698666667	1.698666667	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.44E-37	1	0.000000108	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	45350928	G	C	PVRL2	CCDS42576.1	r.?	-	-	intronic	13	0	0	32	6	18.8	16	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.7646161	6	2	3	2	3	0.2353839	1	3	NA	2	NA	0.7646161	NA	1.270246829	1.270246829	1	0	0	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.27E-08	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	17	45383221	G	C	ITGB3	CCDS11511.1	r.?	-	-	intronic	55	0	0	28	4	14.3	33	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.570858283	0.570858283	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.0000116	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	73673861	C	G	KCNQ5	CCDS4976.1	r.?	-	-	intronic	54	0	0	32	15	46.9	24	8	33.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.872255489	0.936127745	2	2.921052632	1.460526316	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.59E-26	1	2.68E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	77805758	T	G	-	-	-	-	-	-	39	0	0	39	17	43.6	31	7	22.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.740518962	0.870259481	2	1.98245614	0.99122807	2	NA	NA	1	NA	NA	1	4	NA	1	1	3.51E-29	1	1.85E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	45461923	A	G	-	-	-	-	-	-	42	0	0	43	20	46.5	38	6	15.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	2.321287425	1.160643713	2	1.543964912	1.543964912	1	NA	NA	1	NA	NA	1	4	NA	1	1	8.21E-35	1	3.76E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	45486221	A	G	-	-	-	-	-	-	43	0	0	48	10	20.8	40	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.038339321	1.038339321	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	5.37E-14	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	45498484	C	T	-	-	-	-	-	-	34	0	0	46	21	45.7	30	8	26.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.738351297	1.369175649	2	2.876105263	1.438052632	2	NA	NA	1	NA	NA	1	4	NA	1	1	2.94E-36	1	2.07E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	45542955	T	C	-	-	-	-	-	-	38	0	0	30	4	13.3	30	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.663938124	0.663938124	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.0000154	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	45589363	C	T	PRPF39	CCDS9682.2	r.?	-	-	downstream	42	0	0	29	5	17.2	33	1	3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.686626747	0.686626747	1	0.263157895	0.263157895	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.000000336	1	0.15245715	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	45590095	C	G	-	-	-	-	-	-	41	0	0	43	5	11.6	41	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	4	3.588049503	2	2	2	1	1	0.411950497	NA	2	NA	2	NA	0.588049503	0.695073852	0.695073852	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	0.00000257	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	45614033	C	T	-	-	-	-	-	-	37	0	0	45	16	35.6	38	9	23.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3.293619843	2	2	1	1	1	0.706380157	NA	3	NA	1	NA	0.293619843	1.777157685	0.888578842	2	2.385535271	1.040074395	2.293619843	NA	NA	1	NA	NA	1	4	NA	1	1	8.61E-26	1	2.79E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	45647065	C	T	-	-	-	-	-	-	17	0	0	9	6	66.7	5	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	3	3	1	1	1	1	NA	NA	NA	NA	NA	NA	3.996674651	1.332224884	3	0	0	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.30E-12	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	45656046	T	A	EYA2	CCDS13403.1	r.?	-	-	intronic	55	0	0	53	22	41.5	39	6	15.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	5	3	3	3	2	1	1	NA	NA	NA	NA	NA	NA	3.316686627	1.105562209	3	1.812877193	1.812877193	1	NA	NA	1	NA	NA	0	4	NA	1	1	9.50E-37	1	4.43E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	45677250	G	T	-	-	-	-	-	-	27	0	0	52	24	46.2	33	4	12.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6.241955165	4.32434803	4	2	2	2	0.758044835	0.67565197	4	3	3	2	0.241955165	0.32434803	3.804094664	1.012253667	3.758044835	1.34264962	1.34264962	1	NA	NA	1	NA	NA	0	4	NA	1	1	2.22E-41	1	0.0000228	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	45684919	T	G	EYA2	CCDS13403.1	r.?	-	-	intronic	30	0	0	33	11	33.3	33	4	12.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	5	3	3	3	2	1	1	NA	NA	NA	NA	NA	NA	2.661341317	0.887113772	3	1.424403509	1.424403509	1	NA	NA	1	NA	NA	0	4	NA	1	1	8.54E-18	1	0.0000228	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	45722548	G	T	EYA2	CCDS13403.1	r.?	-	-	intronic	28	0	0	49	10	20.4	40	2	5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	5	3	3	3	2	1	1	NA	NA	NA	NA	NA	NA	1.630371257	1.630371257	1	0.588596491	0.588596491	1	NA	NA	1	NA	NA	0	4	NA	1	1	6.72E-14	1	0.017193422	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	22	45739007	G	A	SMC1B	CCDS43027.1	r.?	-	-	downstream	28	0	0	30	16	53.3	22	3	13.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.292921926	5	3	4	0	1	0.707078074	1	3	NA	1	NA	0.292921926	NA	2.816871897	1.040558056	2.707078074	1.600982456	1.600982456	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.08E-29	1	0.000179267	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	45749713	C	A	ANO6	CCDS31782.1	r.?	-	-	intronic	31	0	0	51	15	29.4	29	8	27.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.467652695	1.467652695	1	2.697052632	1.348526316	2	NA	NA	1	NA	NA	1	4	NA	1	1	8.22E-23	1	1.53E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	85117801	G	A	-	-	-	-	-	-	36	0	0	38	7	18.4	36	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.734530938	0.734530938	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	8.61E-10	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	85523999	C	T	-	-	-	-	-	-	40	0	0	29	5	17.2	26	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.686626747	0.686626747	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.000000336	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	90761419	G	A	BACH2	CCDS5026.1	r.?	-	-	intronic	56	0	0	55	24	43.6	34	8	23.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.740518962	0.870259481	2	2.061403509	1.030701754	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.28E-40	1	6.32E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	45866927	C	T	CLIC5	CCDS47438.1	r.?	-	-	downstream	46	0	0	43	7	16.3	34	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	4	3.588049503	2	2	2	1	1	0.411950497	NA	2	NA	2	NA	0.588049503	0.976698603	0.976698603	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	2.15E-09	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	45880766	A	C	-	-	-	-	-	-	37	0	0	36	18	50	40	7	17.5	1	0	0	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.996007984	0.998003992	2	1.535087719	1.535087719	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.18E-32	1	1.26E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	45897747	C	G	ZMYND8	CCDS46613.1	r.?	-	-	intronic	22	0	0	42	16	38.1	24	4	16.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	5	3	3	3	2	1	1	NA	NA	NA	NA	NA	NA	3.044958084	1.014986028	3	1.965912281	1.965912281	1	NA	NA	1	NA	NA	0	4	NA	1	1	2.25E-26	1	0.00000613	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	45919393	G	A	CLIC5	CCDS47438.1	r.?	-	-	intronic	38	0	0	31	9	29	36	4	11.1	239	1	0.4	301	58	19.3	203	11	5.4	7.92E-06	TRUE	TRUE	4	3.588049503	2	2	2	1	1	0.411950497	NA	2	NA	2	NA	0.588049503	1.737684631	1.737684631	1	1.149957705	1.149957705	1	1.156459082	1.156459082	1	0.559438884	0.95134658	0.588049503	4	3	1	0.698202041	3.57E-14	7.12E-72	0.0000324	9.30E-09	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	1	45957165	A	C	TESK2	CCDS41323.1	r.?	-	-	upstream	24	0	0	30	8	26.7	25	4	16	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.332868263	1.332868263	1	1.883508772	1.883508772	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.07E-12	1	0.00000727	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	45963306	G	A	-	-	-	-	-	-	45	1	2.2	41	15	36.6	37	6	16.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.827077844	0.913538922	2	1.583052632	1.583052632	1	NA	NA	1	NA	NA	1	4	NA	0.201934322	1	1.71E-24	1	3.18E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	45970110	T	C	-	-	-	-	-	-	50	0	0	98	26	26.5	63	12	19	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	10.19154907	8.289880778	8	6	2	2	0.808450931	0.710119222	8	6	3	3	0.191549069	0.289880778	3.228644735	1.076214912	3	2.861744014	0.953914671	3	NA	NA	0	NA	NA	0	4	NA	1	1	4.02E-37	1	5.15E-16	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	46049276	T	A	PRKCE	CCDS1824.1	r.?	-	-	intronic	28	0	0	80	10	12.5	41	0	0	0	0	NA	2	0	0	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	0.999001996	0.999001996	1	0	0	1	0	0	1	NA	NA	1	3	NA	1	1	1.17E-11	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	98655925	G	T	-	-	-	-	-	-	43	0	0	27	12	44.4	28	6	21.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.77245509	0.886227545	2	1.877192982	1.877192982	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.96E-21	1	5.36E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	107322267	C	T	BBX	CCDS2950.1	r.?	-	-	intronic	46	0	0	53	11	20.8	39	2	5.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	1.111998944	1.111998944	1	0.600368421	0.600368421	1	NA	NA	0	NA	NA	1	4	NA	1	1	3.07E-15	1	0.016387522	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	46151325	T	A	-	-	-	-	-	-	53	0	0	61	16	26.2	32	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	4	3.588049503	2	2	2	1	1	0.411950497	NA	2	NA	2	NA	0.588049503	1.569908184	0.784954092	2	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	2.50E-23	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	22	46161044	C	T	ATXN10	CCDS14070.1	r.?	-	-	intronic	50	0	0	34	6	17.6	18	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.292921926	5	3	4	0	1	0.707078074	1	3	NA	1	NA	0.292921926	NA	0.930149069	0.930149069	1	0	0	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.86E-08	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	46168971	G	C	-	-	-	-	-	-	33	0	0	53	5	9.4	28	3	10.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6.241955165	4.32434803	4	2	2	2	0.758044835	0.67565197	4	3	3	2	0.241955165	0.32434803	0.773993287	0.773993287	1	1.18730173	1.18730173	1	NA	NA	0	NA	NA	0	4	NA	1	1	0.00000734	1	0.000372895	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	46173837	C	T	-	-	-	-	-	-	37	0	0	44	13	29.5	32	4	12.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	3.588049503	2	2	2	1	1	0.411950497	NA	2	NA	2	NA	0.588049503	1.767644711	0.883822355	2	1.294997416	1.294997416	1	NA	NA	1	NA	NA	0	4	NA	1	1	5.49E-20	1	0.0000201	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	46177252	G	A	-	-	-	-	-	-	50	0	0	40	5	12.5	26	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.624001996	0.624001996	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.00000178	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	46200964	C	T	-	-	-	-	-	-	31	0	0	109	20	18.3	42	8	19	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	10.19154907	8.289880778	8	6	2	2	0.808450931	0.710119222	8	6	3	3	0.191549069	0.289880778	2.229592402	1.114796201	2	2.861744014	0.953914671	3	NA	NA	1	NA	NA	0	4	NA	1	1	2.24E-25	1	3.96E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	46258107	G	A	RCAN2	CCDS43469.1	r.?	-	-	intronic	54	0	0	53	9	17	38	1	2.6	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	4	3.588049503	2	2	2	1	1	0.411950497	NA	2	NA	2	NA	0.588049503	1.018642715	1.018642715	1	0.269359463	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	7.10E-12	1	0.173434892	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	100737854	A	T	-	-	-	-	-	-	69	0	0	36	18	50	29	6	20.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.996007984	0.998003992	2	1.815789474	1.815789474	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.18E-32	1	6.72E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	46277456	G	A	PRKCE	CCDS1824.1	r.?	-	-	intronic	40	0	0	63	31	49.2	35	12	34.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	3.932071856	0.983017964	4	4.38077193	1.095192982	4	NA	NA	1	NA	NA	1	4	NA	1	1	3.65E-54	1	1.83E-19	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	46277813	C	T	NCOA3	CCDS13407.1	r.3802c>u	c.3611C>T	p.A1204V	missense	34	0	0	47	8	17	32	0	0	210	0	0	158	24	15.2	215	14	6.5	5.14E-08	FALSE	TRUE	6	5	3	3	3	2	1	1	NA	NA	NA	NA	NA	NA	1.358642715	1.358642715	1	0	NA	0	1.214786427	1.214786427	1	0.765175439	0.765175439	1	NA	3	1	1	1.03E-10	4.69E-28	1	8.02E-12	YES	1_1	0_1	somatic	custom.pulldown.HiSeq
PD9852b	3	130852416	C	T	NEK11	CCDS3069.1	r.?	-	-	intronic	50	0	0	41	13	31.7	37	6	16.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.351371459	5	2	3	1	2	0.648628541	1	2	NA	2	NA	0.351371459	NA	1.693853814	1.027432058	1.648628541	1.907052632	1.907052632	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.89E-20	1	3.18E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	46370258	A	T	PRKCE	CCDS1824.1	r.?	-	-	intronic	52	0	0	68	5	7.4	41	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	0.591409182	0.591409182	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.0000251	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	46381169	G	T	-	-	-	-	-	-	56	0	0	97	10	10.3	53	6	11.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	10.19154907	8.289880778	8	6	2	2	0.808450931	0.710119222	8	6	3	3	0.191549069	0.289880778	1.254907199	1.254907199	1	1.701984598	1.701984598	1	NA	NA	1	NA	NA	0	4	NA	1	1	8.27E-11	1	0.000000293	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	103670556	C	A	-	-	-	-	-	-	43	0	0	41	7	17.1	32	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.682634731	0.682634731	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	1.51E-09	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	46403433	C	A	-	-	-	-	-	-	48	0	0	42	8	19	28	1	3.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3.293619843	2	2	1	1	1	0.706380157	NA	3	NA	1	NA	0.293619843	0.948483034	0.948483034	1	0.362359788	0.362359788	1	NA	NA	0	NA	NA	1	4	NA	1	1	3.96E-11	1	0.130947004	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	46428415	A	G	AMBRA1	CCDS31475.1	r.?	-	-	intronic	30	0	0	31	6	19.4	38	2	5.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.968451098	0.968451098	1	0.517912281	0.517912281	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.03E-08	1	0.015598339	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	46453757	T	A	MAST2	CCDS41326.1	r.?	-	-	intronic	52	0	0	41	10	24.4	37	7	18.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.218051896	1.218051896	1	2.224894737	1.112447368	2	NA	NA	0	NA	NA	1	4	NA	1	1	9.51E-15	1	7.05E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	46464124	G	T	AMBRA1	CCDS31475.1	r.?	-	-	intronic	38	0	0	27	9	33.3	23	3	13	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.662341317	1.662341317	1	1.270350877	1.270350877	1	NA	NA	1	NA	NA	1	4	NA	1	1	8.44E-15	1	0.000205387	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	46556123	C	A	-	-	-	-	-	-	44	0	0	61	7	11.5	36	1	2.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.574081836	0.574081836	1	0.273614035	0.273614035	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.69E-08	1	0.165106833	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	46583929	C	A	ANKRD26P1	ENST00000329373	r.?	-	-	intronic	48	0	0	111	6	5.4	57	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	9.313373224	5.626372055	7	3	2	2	0.686626776	0.373627945	7	3	3	3	0.313373224	0.626372055	0.610491016	0.610491016	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	0.0000226	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	122571722	G	A	-	-	-	-	-	-	65	0	0	23	14	60.9	31	9	29	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.431137725	1.215568862	2	2.543859649	1.271929825	2	NA	NA	1	NA	NA	1	4	NA	1	1	4.78E-27	1	3.57E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	46650388	G	A	SLC38A1	CCDS41774.1	r.?	-	-	intronic	28	0	0	39	17	43.6	29	3	10.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	2.176518962	1.088259481	2	1.006508772	1.006508772	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.51E-29	1	0.000414371	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	46722142	A	G	-	-	-	-	-	-	58	0	0	35	7	20	34	4	11.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.998403194	0.998403194	1	1.153087719	1.153087719	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.65E-10	1	0.0000257	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	46737366	C	A	-	-	-	-	-	-	48	0	0	45	12	26.7	31	3	9.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.065868263	1.065868263	1	0.850877193	0.850877193	1	NA	NA	1	NA	NA	1	4	NA	1	1	6.03E-18	1	0.000505952	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	21	46744500	T	C	-	-	-	-	-	-	17	0	0	18	10	55.6	9	3	33.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.319395774	5	3	4	0	1	0.680604226	1	3	NA	1	NA	0.319395774	NA	2.953144928	0.984381643	3	3.920052632	0.980013158	4	NA	NA	0	NA	NA	1	4	NA	1	1	4.12E-19	1	0.0000103	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	132436447	G	A	-	-	-	-	-	-	47	0	0	30	7	23.3	30	5	16.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.930139721	0.930139721	1	1.464912281	1.464912281	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.44E-10	1	0.000000401	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	17	46786792	G	A	-	-	-	-	-	-	34	0	0	40	19	47.5	37	5	13.5	0	0	NA	1	0	0	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.896207585	0.948103792	2	1.184210526	1.184210526	1	0	0	1	NA	NA	1	4	NA	1	1	2.27E-33	1	0.00000119	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	46790060	A	T	PRSS46	CCDS2745.1	r.?	-	-	intronic	32	0	0	39	14	35.9	36	8	22.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5	5	3	3	2	2	1	1	NA	NA	NA	NA	NA	NA	2.510133733	0.836711244	3	2.613368421	0.871122807	3	NA	NA	1	NA	NA	1	4	NA	1	1	8.19E-23	1	1.04E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	46837562	C	A	-	-	-	-	-	-	20	0	0	24	5	20.8	26	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.038339321	1.038339321	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	0.000000123	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	46882094	G	A	PHF16	CCDS14271.1	r.?	-	-	intronic	45	0	0	57	8	14	43	2	4.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6.241955165	4.32434803	4	2	2	2	0.758044835	0.67565197	4	3	3	2	0.241955165	0.32434803	1.152755959	1.152755959	1	0.521525059	0.521525059	1	NA	NA	1	NA	NA	0	4	NA	1	1	5.19E-10	1	0.019709573	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	46948805	C	T	DYM	CCDS11937.1	r.?	-	-	intronic	54	0	0	25	9	36	35	11	31.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.437125749	1.437125749	1	2.754385965	1.377192982	2	NA	NA	1	NA	NA	1	4	NA	1	1	3.71E-15	1	1.82E-17	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	46965029	G	A	SYT15	CCDS44376.1	r.983c>u	c.916C>T	p.R306W	missense	28	0	0	132	21	15.9	48	4	8.3	337	0	0	72	17	23.6	43	1	2.3	0.350897372	TRUE	FALSE	4.297222263	4	2	2	2	2	0.702777737	1	3	NA	2	NA	0.297222263	NA	0.999988879	0.999988879	1	0.894070175	0.894070175	1	1.484260223	1.484260223	1	0.247754386	NA	0	4	NA	1	1	3.48E-25	7.97E-24	0.000102016	0.193893409	YES	1_1	1_0	somatic	custom.pulldown.HiSeq
PD9852b	6	140129698	T	A	-	-	-	-	-	-	27	0	0	24	4	16.7	38	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.666666667	0.666666667	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.00000613	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	46976294	T	C	SOCS5	CCDS1830.1	r.?	-	-	intronic	55	0	0	69	8	11.6	40	6	15	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	0.927073852	0.927073852	1	1.915789474	1.915789474	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.49E-09	1	5.18E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	47000554	G	T	-	-	-	-	-	-	61	0	0	98	14	14.3	54	2	3.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	10.19154907	8.289880778	8	6	2	2	0.808450931	0.710119222	8	6	3	3	0.191549069	0.289880778	1.7422498	0.96339346	1.808450931	0.557286992	0.557286992	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.34E-16	1	0.030129377	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	47005210	A	C	-	-	-	-	-	-	37	0	0	71	10	14.1	38	3	7.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	1.126874251	1.126874251	1	1.008982456	1.008982456	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.42E-12	1	0.000925091	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	47075744	C	G	C11orf49	CCDS41641.1	r.?	-	-	intronic	26	0	0	36	16	44.4	15	3	20	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	2.21645509	1.108227545	2	1.954385965	1.954385965	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.01E-27	1	0.0000544	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	47078045	T	C	CDK16	CCDS48101.1	r.518u>c	c.?	p.?	5'UTR variant	10	0	0	43	5	11.6	13	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	6.241955165	4.32434803	4	2	2	2	0.758044835	0.67565197	4	3	3	2	0.241955165	0.32434803	0.955140651	0.955140651	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	0.00000257	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	17	47081482	C	G	IGF2BP1	CCDS11543.1	r.?	-	-	intronic	16	0	0	21	9	42.9	5	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.71257485	1.71257485	1	0	0	1	NA	NA	1	NA	NA	1	4	NA	1	1	5.44E-16	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	47081516	G	C	ENSG00000239332	ENST00000422294	r.?	-	-	intronic	36	0	0	86	53	61.6	50	13	26	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	4.923081836	1.230770459	4	3.320701754	1.106900585	3	NA	NA	1	NA	NA	1	4	NA	1	1	6.16E-99	1	3.65E-19	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	47081834	C	T	ENSG00000239332	ENST00000422294	r.?	-	-	intronic	27	0	0	71	20	28.2	42	6	14.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	2.253748503	1.126874251	2	1.826385965	1.826385965	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.68E-29	1	7.02E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	47116639	C	T	-	-	-	-	-	-	47	0	0	49	20	40.8	30	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	6.241955165	4.32434803	4	2	2	2	0.758044835	0.67565197	4	3	3	2	0.241955165	0.32434803	3.359460222	0.893938303	3.758044835	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	2.35E-33	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	22	47126579	C	A	CERK	CCDS14077.1	r.?	-	-	intronic	43	0	0	33	13	39.4	24	5	20.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.292921926	5	3	4	0	1	0.707078074	1	3	NA	1	NA	0.292921926	NA	2.08226553	1.041132765	2	2.448561404	0.816187135	3	NA	NA	0	NA	NA	1	4	NA	1	1	6.37E-22	1	0.000000123	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	140283215	A	G	-	-	-	-	-	-	52	0	0	36	5	13.9	37	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.55489022	0.55489022	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.00000104	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	47139574	C	G	-	-	-	-	-	-	46	0	0	46	4	8.7	23	1	4.3	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	4	3.588049503	2	2	2	1	1	0.411950497	NA	2	NA	2	NA	0.588049503	0.521305389	0.521305389	1	0.445479111	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	0.0000862	1	0.108890944	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	47166963	G	T	TTC7A	CCDS33193.1	r.?	-	-	upstream	32	0	0	76	9	11.8	46	5	10.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	0.943057884	0.943057884	1	1.392140351	1.392140351	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.06E-10	1	0.00000361	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	47174955	T	C	SLC38A4	CCDS8750.1	r.?	-	-	intronic	56	0	0	42	16	38.1	35	12	34.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.901958084	0.950979042	2	3.35177193	1.675885965	2	NA	NA	1	NA	NA	1	4	NA	1	1	2.25E-26	1	1.83E-19	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	47208442	G	T	GABRB1	CCDS3474.1	r.?	-	-	intronic	58	0	0	40	9	22.5	29	1	3.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.123203593	1.123203593	1	0.332245614	0.332245614	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.64E-13	1	0.135292269	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	47214977	G	C	LRCH1	CCDS31972.1	r.?	-	-	intronic	42	0	0	52	10	19.2	34	1	2.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.150467066	1.150467066	1	0.312385965	0.312385965	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.28E-13	1	0.156694864	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	47232344	A	G	LRCH1	CCDS31972.1	r.?	-	-	intronic	45	0	0	49	6	12.2	29	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.731025948	0.731025948	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.000000182	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	144033196	C	A	PHACTR2	CCDS47493.1	r.289c>a	c.90C>A	p.P30P	silent	53	0	0	32	16	50	33	10	30.3	197	3	1.5	255	98	38.4	277	45	16.2	1.59E-39	TRUE	TRUE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.996007984	0.998003992	2	2.657894737	1.328947368	2	1.532934132	0.766467066	2	1.421052632	0.710526316	2	4	3	1	0.077101309	8.51E-29	4.39E-154	8.14E-16	1.42E-52	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	22	47287746	C	T	TBC1D22A	CCDS14078.1	r.?	-	-	intronic	35	0	0	20	8	40	33	1	3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.292921926	5	3	4	0	1	0.707078074	1	3	NA	1	NA	0.292921926	NA	2.113975157	1.056987579	2	0.353157895	0.353157895	1	NA	NA	0	NA	NA	1	4	NA	1	1	4.66E-14	1	0.15245715	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	47313527	C	T	C2orf61	ENST00000445927	r.?	-	-	intronic	22	0	0	58	12	20.7	40	2	5	2	0	0	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	1.654347305	0.827173653	2	0.638596491	0.638596491	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.76E-16	1	0.017193422	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	47321079	G	C	GABRB1	CCDS3474.1	r.?	-	-	intronic	49	0	0	40	8	20	20	1	5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.998403194	0.998403194	1	0.488596491	0.488596491	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.61E-11	1	0.09538952	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	47329551	T	G	GABRB1	CCDS3474.1	r.?	-	-	intronic	41	0	0	33	14	42.4	31	6	19.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	2.11661477	1.058307385	2	1.895754386	1.895754386	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.57E-24	1	1.03E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	47395253	G	A	PREX1	CCDS13410.1	r.?	-	-	intronic	31	0	0	49	8	16.3	31	5	16.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	5	3	3	3	2	1	1	NA	NA	NA	NA	NA	NA	1.302698603	1.302698603	1	1.895280702	1.895280702	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.47E-10	1	0.000000476	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	21	47426904	G	T	COL6A1	CCDS13727.1	r.?	-	-	downstream	20	0	0	30	4	13.3	13	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.319395774	5	3	4	0	1	0.680604226	1	3	NA	1	NA	0.319395774	NA	0.706417762	0.706417762	1	0	0	1	NA	NA	0	NA	NA	1	4	NA	1	1	0.0000154	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	47432888	A	G	-	-	-	-	-	-	50	0	0	37	18	48.6	27	6	22.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	2.42611976	1.21305988	2	2.613368421	0.871122807	3	NA	NA	0	NA	NA	1	4	NA	1	1	6.16E-32	1	4.23E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	46080637	A	T	GABRG1	CCDS3470.1	r.?	-	-	intronic	55	0	0	38	5	13.2	28	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.658946108	0.658946108	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.00000137	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	46335259	A	T	GABRA2	CCDS3471.1	r.?	-	-	intronic	50	0	0	40	5	12.5	34	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.624001996	0.624001996	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.00000178	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	47547549	G	A	TNS3	CCDS5506.2	r.?	-	-	intronic	27	0	0	81	38	46.9	40	11	27.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	10.19154907	8.289880778	8	6	2	2	0.808450931	0.710119222	8	6	3	3	0.191549069	0.289880778	5.714092002	0.983754889	5.808450931	4.141997916	1.035499479	4	NA	NA	0	NA	NA	0	4	NA	1	1	5.41E-65	1	9.88E-17	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	47579718	T	C	-	-	-	-	-	-	51	0	0	47	14	29.8	28	9	32.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.785620758	0.892810379	2	3.457789474	1.728894737	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.79E-21	1	1.24E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	47608698	G	A	-	-	-	-	-	-	48	0	0	41	9	22	32	4	12.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.318243513	1.318243513	1	1.346491228	1.346491228	1	NA	NA	1	NA	NA	1	4	NA	1	1	5.92E-13	1	0.0000201	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	47609584	A	G	ZC3H4	CCDS42582.1	r.?	-	-	intronic	39	0	0	40	9	22.5	23	2	8.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.7646161	6	2	3	2	3	0.2353839	1	3	NA	2	NA	0.7646161	NA	1.520242215	1.520242215	1	1.111157895	1.111157895	1	NA	NA	0	NA	NA	1	4	NA	1	1	4.64E-13	1	0.00589844	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	151121318	C	A	PLEKHG1	CCDS34552.1	r.?	-	-	intronic	50	0	0	44	10	22.7	23	1	4.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.906187625	0.906187625	1	0.377192982	0.377192982	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.08E-14	1	0.108890944	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	47696896	C	T	TAL1	CCDS547.1	r.?	-	-	upstream	12	0	0	20	6	30	11	3	27.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.49760479	1.49760479	1	3.213736842	1.071245614	3	NA	NA	0	NA	NA	1	4	NA	1	1	5.70E-10	1	0.00002	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	47734063	T	A	CORIN	CCDS3477.1	r.?	-	-	intronic	46	0	0	31	7	22.6	31	4	12.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.128195609	1.128195609	1	1.260578947	1.260578947	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.85E-10	1	0.0000177	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	47804071	C	G	-	-	-	-	-	-	54	0	0	27	15	55.6	27	1	3.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1	2.620991218	1	2	0	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.663560878	1.663560878	1	0.347538079	0.347538079	1	NA	NA	0	NA	NA	0	4	NA	1	1	5.01E-28	1	0.126579904	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	47825610	G	A	NUP160	CCDS31484.1	r.?	-	-	intronic	30	0	0	35	14	40	27	5	18.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.996806387	0.998403194	2	1.807807018	1.807807018	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.28E-23	1	0.00000023	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	47889535	G	T	-	-	-	-	-	-	28	0	0	19	5	26.3	23	2	8.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.3129002	1.3129002	1	0.850157895	0.850157895	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.43E-08	1	0.00589844	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	47940088	G	A	MDGA2	CCDS45098.1	r.?	-	-	intronic	58	0	0	19	6	31.6	27	5	18.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.261477046	1.261477046	1	1.622807018	1.622807018	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.01E-10	1	0.00000023	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	170662909	G	A	FAM120B	CCDS5314.1	r.?	-	-	intronic	47	0	0	30	15	50	35	14	40	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.996007984	0.998003992	2	3.50877193	1.754385965	2	NA	NA	1	NA	NA	1	4	NA	1	1	4.41E-27	1	1.28E-23	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	48028192	T	G	MAP4	CCDS46818.1	r.?	-	-	intronic	29	0	0	48	12	25	42	10	23.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5	5	3	3	2	2	1	1	NA	NA	NA	NA	NA	NA	1.748003992	0.874001996	2	2.801719298	0.933906433	3	NA	NA	1	NA	NA	1	4	NA	1	1	1.44E-17	1	1.24E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	48036295	A	G	NIPAL1	CCDS3479.1	r.?	-	-	intronic	61	0	0	48	10	20.8	28	5	17.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.038339321	1.038339321	1	1.749175439	1.749175439	1	NA	NA	1	NA	NA	1	4	NA	1	1	5.37E-14	1	0.000000279	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	17	48067746	G	C	DLX3	CCDS11556.1	r.2225c>g	c.?	p.?	3'UTR variant	44	0	0	37	17	45.9	32	4	12.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.832335329	0.916167665	2	1.096491228	1.096491228	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.10E-29	1	0.0000201	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	48077166	A	G	-	-	-	-	-	-	49	0	0	38	7	18.4	45	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	5.626372055	2	3	2	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	1.102530938	1.102530938	1	0	0	1	NA	NA	0	NA	NA	0	3	NA	1	1	8.61E-10	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	17	48078157	G	T	-	-	-	-	-	-	30	0	0	35	13	37.1	18	7	38.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.481037924	1.481037924	1	3.412280702	1.706140351	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.63E-21	1	2.37E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	48102603	G	C	MAP4	CCDS46818.1	r.?	-	-	intronic	14	0	0	29	5	17.2	20	2	10	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5	5	3	3	2	2	1	1	NA	NA	NA	NA	NA	NA	1.202626747	1.202626747	1	1.177192982	1.177192982	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.000000336	1	0.004473894	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	48151773	C	G	-	-	-	-	-	-	36	0	0	48	6	12.5	23	6	26.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.749001996	0.749001996	1	2.811473684	1.405736842	2	NA	NA	1	NA	NA	1	4	NA	1	1	0.00000016	1	1.47E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	48171571	G	A	-	-	-	-	-	-	47	0	0	29	10	34.5	24	5	20.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.377245509	1.377245509	1	1.824561404	1.824561404	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.79E-16	1	0.000000123	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	1439363	A	G	-	-	-	-	-	-	17	0	0	45	25	55.6	25	6	24	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7	4.260310284	4	2	3	2	1	0.739689716	NA	3	NA	2	NA	0.260310284	4.999560878	1.24989022	4	2.647737626	1.171404495	2.260310284	NA	NA	1	NA	NA	0	4	NA	1	1	8.58E-46	1	2.55E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	2958554	C	A	CARD11	CCDS5336.2	r.?	-	-	intronic	22	0	0	52	24	46.2	16	3	18.8	304	0	0	57	16	28.1	31	7	22.6	2.13E-08	TRUE	TRUE	7	4.260310284	4	2	3	2	1	0.739689716	NA	3	NA	2	NA	0.260310284	4.154311377	1.038577844	4	2.07406114	2.07406114	1	2.526756487	0.842252162	3	2.493286264	1.103072566	2.260310284	4	3	1	1	2.22E-41	7.28E-24	0.0000667	1.85E-10	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	6	48253476	C	A	-	-	-	-	-	-	48	0	0	48	12	25	42	1	2.4	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	4	3.588049503	2	2	2	1	1	0.411950497	NA	2	NA	2	NA	0.588049503	1.498003992	1.498003992	1	0.248639504	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	1.44E-17	1	0.189842622	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	48285752	G	C	-	-	-	-	-	-	63	0	0	30	16	53.3	19	3	15.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.127744511	1.063872255	2	1.385964912	1.385964912	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.08E-29	1	0.000114071	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	48287572	G	A	-	-	-	-	-	-	50	0	0	51	19	37.3	40	9	22.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	3.588049503	2	2	2	1	1	0.411950497	NA	2	NA	2	NA	0.588049503	2.235021956	1.117510978	2	2.330995349	1.165497674	2	NA	NA	1	NA	NA	0	4	NA	1	1	7.94E-31	1	4.64E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	48287982	G	C	-	-	-	-	-	-	29	0	0	53	8	15.1	39	3	7.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3.293619843	2	2	1	1	1	0.706380157	NA	3	NA	1	NA	0.293619843	0.753794411	0.753794411	1	0.775047324	0.775047324	1	NA	NA	1	NA	NA	0	4	NA	1	1	2.83E-10	1	0.000998458	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	48300293	C	T	-	-	-	-	-	-	40	0	0	48	21	43.8	24	2	8.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	2.186502994	1.093251497	2	0.811070175	0.811070175	1	NA	NA	1	NA	NA	1	4	NA	1	1	9.35E-36	1	0.006413403	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	48304867	T	G	-	-	-	-	-	-	56	0	0	36	4	11.1	25	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.443113772	0.443113772	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.0000324	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	48429012	C	T	GDF10	CCDS7220.1	r.1140g>a	c.874G>A	p.A292T	missense	15	0	0	37	7	18.9	14	1	7.1	42	0	0	9	0	0	9	0	0	1	TRUE	TRUE	4.297222263	4	2	2	2	2	0.702777737	1	3	NA	2	NA	0.297222263	NA	1.188666026	1.188666026	1	0.764807018	0.764807018	1	0	0	1	0	0	1	4	NA	1	1	7.05E-10	1	0.067769881	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	48451754	G	C	-	-	-	-	-	-	25	0	0	49	5	10.2	25	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.297222263	4	2	2	2	2	0.702777737	1	3	NA	2	NA	0.297222263	NA	0.6415023	0.6415023	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.00000496	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	48453299	T	G	ME2	CCDS11948.1	r.?	-	-	intronic	49	0	0	38	22	57.9	30	7	23.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.311377246	1.155688623	2	2.043859649	1.021929825	2	NA	NA	1	NA	NA	1	4	NA	1	1	4.91E-41	1	1.44E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	6509089	T	C	KDELR2	CCDS5351.1	r.?	-	-	intronic	26	0	0	60	29	48.3	33	6	18.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7	4.260310284	4	2	3	2	1	0.739689716	NA	3	NA	2	NA	0.260310284	4.343143713	1.085785928	4	2.0078677	2.0078677	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.83E-50	1	1.54E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	48484979	T	A	-	-	-	-	-	-	55	0	0	54	7	13	31	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	4	3.588049503	2	2	2	1	1	0.411950497	NA	2	NA	2	NA	0.588049503	0.778962076	0.778962076	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	1.13E-08	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	8075303	T	C	GLCCI1	CCDS34601.1	r.?	-	-	intronic	49	0	0	60	8	13.3	27	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	7	4.260310284	4	2	3	2	1	0.739689716	NA	3	NA	2	NA	0.260310284	1.195938124	1.195938124	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	7.93E-10	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	59898636	C	A	-	-	-	-	-	-	63	0	0	50	10	20	43	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.998403194	0.998403194	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	8.36E-14	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	48515052	G	T	-	-	-	-	-	-	54	0	0	52	8	15.4	37	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	4	3.588049503	2	2	2	1	1	0.411950497	NA	2	NA	2	NA	0.588049503	0.922770459	0.922770459	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	2.42E-10	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	48517792	C	T	-	-	-	-	-	-	14	0	0	24	11	45.8	6	1	16.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6.241955165	4.32434803	4	2	2	2	0.758044835	0.67565197	4	3	3	2	0.241955165	0.32434803	3.771158779	1.003489566	3.758044835	1.853078402	1.853078402	1	NA	NA	0	NA	NA	0	4	NA	1	1	1.15E-19	1	0.029627491	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	48523755	T	A	ABCA13	CCDS47584.1	r.?	-	-	intronic	50	0	0	82	10	12.2	52	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	10.19154907	8.289880778	8	6	2	2	0.808450931	0.710119222	8	6	3	3	0.191549069	0.289880778	1.486394935	1.486394935	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	1.51E-11	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	48619749	C	A	-	-	-	-	-	-	39	0	0	49	13	26.5	27	4	14.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.057884232	1.057884232	1	1.298245614	1.298245614	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.71E-19	1	0.00001	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	48625997	G	C	FRYL	CCDS43227.1	r.?	-	-	intronic	65	0	0	47	7	14.9	24	2	8.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.743810379	0.743810379	1	0.811070175	0.811070175	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.12E-09	1	0.006413403	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	48649573	A	G	-	-	-	-	-	-	40	0	0	46	6	13	20	1	5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3.293619843	2	2	1	1	1	0.706380157	NA	3	NA	1	NA	0.293619843	0.648962076	0.648962076	1	0.503277483	0.503277483	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.000000123	1	0.09538952	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	48676733	T	A	-	-	-	-	-	-	45	0	0	47	15	31.9	31	1	3.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.592453094	0.796226547	2	0.312701754	0.312701754	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.97E-23	1	0.143917729	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	48685930	T	G	ABCA13	CCDS47584.1	r.16023u>g	c.?	p.?	3'UTR variant	24	0	0	76	17	22.4	37	1	2.7	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	10.19154907	8.289880778	8	6	2	2	0.808450931	0.710119222	8	6	3	3	0.191549069	0.289880778	2.729118568	0.97175227	2.808450931	0.406668886	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	2.21E-23	1	0.169281299	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	48711579	G	T	-	-	-	-	-	-	55	0	0	53	12	22.6	42	5	11.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	3.588049503	2	2	2	1	1	0.411950497	NA	2	NA	2	NA	0.588049503	1.354195609	1.354195609	1	1.23283754	1.23283754	1	NA	NA	1	NA	NA	0	4	NA	1	1	5.39E-17	1	0.00000228	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	48765342	G	A	FRYL	CCDS43227.1	r.?	-	-	intronic	40	0	0	33	5	15.2	22	3	13.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.758786427	0.758786427	1	1.328982456	1.328982456	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.00000066	1	0.000179267	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	48767150	C	T	-	-	-	-	-	-	60	0	0	94	31	33	59	9	15.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	10.19154907	8.289880778	8	6	2	2	0.808450931	0.710119222	8	6	3	3	0.191549069	0.289880778	4.020576462	1.005144116	4	2.304457022	0.850315736	2.710119222	NA	NA	0	NA	NA	0	4	NA	1	1	2.29E-47	1	1.96E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	48784118	G	A	-	-	-	-	-	-	41	0	0	89	6	6.7	39	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	10.19154907	8.289880778	8	6	2	2	0.808450931	0.710119222	8	6	3	3	0.191549069	0.289880778	0.816298857	0.816298857	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	0.00000637	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	48811570	C	T	OTUD5	CCDS14313.1	r.?	-	-	intronic	46	0	0	51	9	17.6	34	4	11.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6.241955165	4.32434803	4	2	2	2	0.758044835	0.67565197	4	3	3	2	0.241955165	0.32434803	1.449178919	1.449178919	1	1.309360787	1.309360787	1	NA	NA	0	NA	NA	0	4	NA	1	1	4.92E-12	1	0.0000257	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	48827611	A	G	-	-	-	-	-	-	62	0	0	36	18	50	36	10	27.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.996007984	0.998003992	2	2.438596491	1.219298246	2	NA	NA	1	NA	NA	1	4	NA	1	1	3.18E-32	1	2.21E-15	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	48845989	G	C	-	-	-	-	-	-	50	0	0	88	16	18.2	47	14	29.8	50	0	0	265	34	12.8	184	18	9.8	7.99E-13	TRUE	TRUE	10.19154907	8.289880778	8	6	2	2	0.808450931	0.710119222	8	6	3	3	0.191549069	0.289880778	2.217408837	1.108704418	2	4.488419559	0.952931199	4.710119222	1.559496325	0.862338202	1.808450931	1.476057439	1.476057439	1	4	3	1	1	1.57E-20	1.72E-36	1.79E-21	6.71E-18	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	7	48846310	G	T	-	-	-	-	-	-	55	0	0	90	18	20	47	3	6.4	6	0	0	15	6	40	7	1	14.3	0.067934652	TRUE	TRUE	10.19154907	8.289880778	8	6	2	2	0.808450931	0.710119222	8	6	3	3	0.191549069	0.289880778	2.436713007	0.867635956	2.808450931	0.963955879	0.963955879	1	4.873426015	1.013512685	4.808450931	2.153838916	2.153838916	1	4	3	1	1	1.03E-23	7.52E-11	0.001719595	0.034479353	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	48846550	G	A	-	-	-	-	-	-	43	0	0	87	18	20.7	41	6	14.6	246	0	0	513	68	13.3	343	35	10.2	4.32E-24	TRUE	TRUE	10.19154907	8.289880778	8	6	2	2	0.808450931	0.710119222	8	6	3	3	0.191549069	0.289880778	2.521997963	0.898003214	2.808450931	2.199024348	1.099512174	2	1.62041415	0.896023288	1.808450931	1.536304681	0.898361156	1.710119222	4	3	1	1	5.29E-24	2.82E-72	6.05E-08	5.67E-34	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	7	48846553	G	A	-	-	-	-	-	-	41	0	0	88	18	20.5	43	6	14	251	0	0	518	70	13.5	343	32	9.3	5.58E-21	TRUE	TRUE	10.19154907	8.289880778	8	6	2	2	0.808450931	0.710119222	8	6	3	3	0.191549069	0.289880778	2.497630833	0.889326855	2.808450931	2.108653484	2.108653484	1	1.64478128	0.909497323	1.808450931	1.400748386	0.819093995	1.710119222	4	3	1	1	6.62E-24	5.88E-75	8.13E-08	5.92E-30	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	7	48846699	G	A	-	-	-	-	-	-	54	0	0	97	20	20.6	35	0	0	143	1	0.7	246	16	6.5	113	8	7.1	2.02E-05	FALSE	TRUE	10.19154907	8.289880778	8	6	2	2	0.808450931	0.710119222	8	6	3	3	0.191549069	0.289880778	2.509814398	0.893665034	2.808450931	0	NA	0	0.791931727	0.791931727	1	1.069388553	1.069388553	1	NA	3	1	0.511684459	1.80E-26	2.70E-13	1	0.000000125	YES	1_1	0_1	somatic	custom.pulldown.HiSeq
PD9852b	7	48846896	G	A	-	-	-	-	-	-	45	0	0	93	12	12.9	53	13	24.5	13	0	0	80	12	15	24	3	12.5	0.001729427	TRUE	TRUE	10.19154907	8.289880778	8	6	2	2	0.808450931	0.710119222	8	6	3	3	0.191549069	0.289880778	1.57167989	1.57167989	1	3.690143598	0.994615908	3.710119222	1.827534756	1.010552581	1.808450931	1.882726325	1.882726325	1	4	3	1	1	6.99E-14	1.07E-14	8.53E-19	0.000233853	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	48846947	G	A	-	-	-	-	-	-	46	0	0	75	8	10.7	55	7	12.7	52	0	0	198	33	16.7	101	14	13.9	2.27E-12	TRUE	TRUE	10.19154907	8.289880778	8	6	2	2	0.808450931	0.710119222	8	6	3	3	0.191549069	0.289880778	1.303641459	1.303641459	1	1.912849946	1.912849946	1	2.034655361	1.017327681	2	2.093591674	1.046795837	2	4	3	1	1	4.89E-09	2.20E-39	1.28E-08	2.08E-16	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	7	48847095	G	A	-	-	-	-	-	-	37	0	0	86	16	18.6	37	2	5.4	139	0	0	557	78	14	309	26	8.4	3.00E-16	TRUE	TRUE	10.19154907	8.289880778	8	6	2	2	0.808450931	0.710119222	8	6	3	3	0.191549069	0.289880778	2.266143097	1.133071548	2	0.813337773	0.813337773	1	1.705699105	0.943182409	1.808450931	1.265192091	1.265192091	1	4	3	1	1	1.06E-20	1.43E-84	0.014826063	1.75E-23	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	2	48848800	T	G	STON1-GTF2A1L	CCDS1840.1	r.?	-	-	intronic	64	0	0	43	8	18.6	27	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	1.48651497	1.48651497	1	0	0	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.85E-11	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	71483658	G	T	-	-	-	-	-	-	49	0	0	35	14	40	36	4	11.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	1.996806387	0.998403194	2	1.008473101	1.008473101	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.28E-23	1	0.0000324	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	48889057	A	G	-	-	-	-	-	-	35	0	0	46	18	39.1	18	3	16.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	5	3	3	3	2	1	1	NA	NA	NA	NA	NA	NA	3.124878244	1.041626081	3	1.965912281	1.965912281	1	NA	NA	1	NA	NA	0	4	NA	1	1	9.41E-30	1	0.0000964	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	48903556	C	A	-	-	-	-	-	-	28	0	0	37	11	29.7	31	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	6	5	3	3	3	2	1	1	NA	NA	NA	NA	NA	NA	2.373628743	1.186814371	2	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	3.70E-17	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	48903557	A	G	-	-	-	-	-	-	30	0	0	38	11	28.9	30	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	6	5	3	3	3	2	1	1	NA	NA	NA	NA	NA	NA	2.309692615	1.154846307	2	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	5.19E-17	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	48905245	A	C	SLC25A20	CCDS2779.1	r.?	-	-	intronic	14	0	0	26	7	26.9	16	4	25	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5	5	3	3	2	2	1	1	NA	NA	NA	NA	NA	NA	1.880852295	1.880852295	1	2.942982456	0.980994152	3	NA	NA	1	NA	NA	1	4	NA	1	1	4.73E-11	1	0.00000108	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	8083937	A	G	GLCCI1	CCDS34601.1	r.?	-	-	intronic	39	0	0	61	31	50.8	33	9	27.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7	4.260310284	4	2	3	2	1	0.739689716	NA	3	NA	2	NA	0.260310284	4.567944112	1.141986028	4	3.01180155	1.332472613	2.260310284	NA	NA	1	NA	NA	0	4	NA	1	1	9.37E-55	1	6.76E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	48928075	G	A	-	-	-	-	-	-	43	0	0	78	19	24.4	43	6	14	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	10.19154907	8.289880778	8	6	2	2	0.808450931	0.710119222	8	6	3	3	0.191549069	0.289880778	2.972789869	0.990929956	3	2.108653484	2.108653484	1	NA	NA	1	NA	NA	0	4	NA	1	1	9.67E-27	1	8.13E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	48993112	T	C	-	-	-	-	-	-	35	0	0	45	18	40	20	4	20	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.996806387	0.998403194	2	2.354385965	2.354385965	1	NA	NA	0	NA	NA	1	4	NA	1	1	5.76E-30	1	0.00000284	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	9972389	G	A	-	-	-	-	-	-	28	0	0	39	8	20.5	41	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	7	4.260310284	4	2	3	2	1	0.739689716	NA	3	NA	2	NA	0.260310284	1.843363273	1.843363273	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	2.09E-11	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	86444494	G	A	ARHGAP24	CCDS34025.1	r.?	-	-	intronic	45	0	0	27	10	37	34	5	14.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	1.847045908	0.923522954	2	1.335545458	1.335545458	1	NA	NA	1	NA	NA	0	4	NA	1	1	7.62E-17	1	0.000000771	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	10074586	G	T	-	-	-	-	-	-	62	0	0	51	15	29.4	32	4	12.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7	4.260310284	4	2	3	2	1	0.739689716	NA	3	NA	2	NA	0.260310284	2.643652695	0.881217565	3	1.379030014	1.379030014	1	NA	NA	1	NA	NA	0	4	NA	1	1	8.22E-23	1	0.0000201	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	10231567	C	G	-	-	-	-	-	-	48	0	0	73	5	6.8	42	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	7	4.260310284	4	2	3	2	1	0.739689716	NA	3	NA	2	NA	0.260310284	0.611457086	0.611457086	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	0.0000354	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	13269717	T	C	-	-	-	-	-	-	49	0	0	54	26	48.1	34	2	5.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7	4.260310284	4	2	3	2	1	0.739689716	NA	3	NA	2	NA	0.260310284	4.325159681	1.08128992	4	0.650902166	0.650902166	1	NA	NA	1	NA	NA	0	4	NA	1	1	2.44E-45	1	0.012612579	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	14419404	T	C	DGKB	CCDS47547.1	r.?	-	-	intronic	20	0	0	55	24	43.6	27	1	3.7	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	7	4.260310284	4	2	3	2	1	0.739689716	NA	3	NA	2	NA	0.260310284	3.920518962	0.980129741	4	0.408192884	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	1.28E-40	1	0.126579904	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	22	49097628	A	T	FAM19A5	CCDS46729.1	r.?	-	-	intronic	13	1	7.7	32	14	43.8	3	2	66.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.292921926	5	3	4	0	1	0.707078074	1	3	NA	1	NA	0.292921926	NA	2.314802797	0.855092736	2.707078074	7.851877193	1.962969298	4	NA	NA	0	NA	NA	1	4	NA	0.063085307	1	2.65E-24	1	0.0000748	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	49118720	C	G	-	-	-	-	-	-	48	0	0	40	5	12.5	17	1	5.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	0.999001996	0.999001996	1	0.75354386	0.75354386	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.00000178	1	0.081683532	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	49126838	A	C	PTPN1	CCDS13430.1	r.?	-	-	upstream	18	0	0	63	5	7.9	14	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	6	5	3	3	3	2	1	1	NA	NA	NA	NA	NA	NA	0.631369261	0.631369261	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	0.0000173	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	49130506	T	A	-	-	-	-	-	-	34	0	0	95	31	32.6	43	4	9.3	0	0	NA	0	0	NA	2	0	0	1	TRUE	FALSE	10.19154907	8.289880778	8	6	2	2	0.808450931	0.710119222	8	6	3	3	0.191549069	0.289880778	3.971842202	0.992960551	4	1.400748386	1.400748386	1	NA	NA	1	0	NA	0	4	NA	1	1	3.38E-47	1	0.000066	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	15051901	G	T	-	-	-	-	-	-	51	0	0	59	13	22	32	3	9.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7	4.260310284	4	2	3	2	1	0.739689716	NA	3	NA	2	NA	0.260310284	1.978243513	0.989121756	2	1.03703057	1.03703057	1	NA	NA	1	NA	NA	0	4	NA	1	1	3.99E-18	1	0.000556213	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	49194123	C	G	-	-	-	-	-	-	34	0	0	32	15	46.9	34	10	29.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.810255489	1.405127745	2	3.166947368	1.583473684	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.59E-26	1	1.15E-15	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	16288080	A	C	ISPD	CCDS47550.1	r.?	-	-	intronic	51	0	0	51	21	41.2	36	8	22.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7	4.260310284	4	2	3	2	1	0.739689716	NA	3	NA	2	NA	0.260310284	3.704710579	0.926177645	4	2.449157304	1.083549158	2.260310284	NA	NA	1	NA	NA	0	4	NA	1	1	4.73E-35	1	1.04E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	49226780	T	C	SHC4	CCDS10130.1	r.?	-	-	intronic	41	0	0	51	12	23.5	43	3	7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3.293619843	2	2	1	1	1	0.706380157	NA	3	NA	1	NA	0.293619843	1.173123752	1.173123752	1	0.704588477	0.704588477	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.24E-17	1	0.001328364	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	91475736	A	G	FAM190A	CCDS47100.1	r.?	-	-	intronic	37	0	0	33	16	48.5	32	7	21.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	2.421127745	1.210563872	2	1.989690172	1.514900129	1.313413428	NA	NA	1	NA	NA	0	4	NA	1	1	1.64E-28	1	2.36E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	49281074	T	A	-	-	-	-	-	-	8	0	0	44	6	13.6	32	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	8	4	5	2	3	1	1	NA	NA	NA	NA	NA	NA	1.086914172	1.086914172	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	9.37E-08	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	49311559	G	T	BCAT2	CCDS12735.1	r.?	-	-	intronic	17	0	0	44	5	11.4	33	3	9.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	8	4	5	2	3	1	1	NA	NA	NA	NA	NA	NA	0.91108982	0.91108982	1	1.344245614	1.344245614	1	NA	NA	0	NA	NA	1	4	NA	1	1	0.00000288	1	0.000609557	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	49336009	C	A	AGBL4	CCDS44137.1	r.?	-	-	intronic	53	0	0	45	7	15.6	25	1	4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	0.778754491	0.778754491	1	0.470877193	0.470877193	1	NA	NA	0	NA	NA	1	4	NA	1	1	0.000000003	1	0.117779757	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	49380156	G	T	-	-	-	-	-	-	41	0	0	102	24	23.5	41	6	14.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	10.19154907	8.289880778	8	6	2	2	0.808450931	0.710119222	8	6	3	3	0.191549069	0.289880778	2.863137784	1.019472248	2.808450931	2.199024348	1.099512174	2	NA	NA	0	NA	NA	0	4	NA	1	1	5.60E-33	1	6.05E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	49397400	G	C	-	-	-	-	-	-	50	0	0	35	6	17.1	42	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.853634731	0.853634731	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	2.24E-08	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	137480839	A	G	-	-	-	-	-	-	58	0	0	35	15	42.9	41	5	12.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.277661109	2	1	1	1	1	0.722338891	NA	2	NA	1	NA	0.277661109	2.14157485	1.070787425	2	1.104050094	1.104050094	1	NA	NA	1	NA	NA	0	4	NA	1	1	9.02E-26	1	0.00000202	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	49421628	A	T	-	-	-	-	-	-	41	0	0	27	9	33.3	20	5	25	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.329341317	1.329341317	1	2.192982456	2.192982456	1	NA	NA	1	NA	NA	1	4	NA	1	1	8.44E-15	1	4.55E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	49423427	T	C	AGBL4	CCDS44137.1	r.?	-	-	intronic	40	0	0	28	8	28.6	31	5	16.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.427716567	1.427716567	1	1.895280702	1.895280702	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.11E-12	1	0.000000476	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	49430879	A	T	C16orf78	CCDS10738.1	r.?	-	-	intronic	28	0	0	65	22	33.8	53	7	13.2	204	0	0	130	59	45.4	114	25	21.9	4.21E-26	TRUE	TRUE	4	5.626372055	2	3	2	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	2.025301397	1.012650699	2	1.636575848	1.636575848	1	2.72037525	1.360187625	2	2.715228112	0.905076037	3	4	3	1	1	2.36E-34	6.70E-99	9.85E-09	1.93E-33	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	17	49455224	C	A	-	-	-	-	-	-	38	0	0	25	6	24	27	3	11.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.958083832	0.958083832	1	0.973684211	0.973684211	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.55E-09	1	0.000334187	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	49488680	A	C	GYS1	CCDS12747.1	r.?	-	-	intronic	24	0	0	49	19	38.8	36	8	22.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	8	4	5	2	3	1	1	NA	NA	NA	NA	NA	NA	3.100902196	1.033634065	3	3.279368421	1.093122807	3	NA	NA	0	NA	NA	1	4	NA	1	1	3.12E-31	1	1.04E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	17191331	C	A	-	-	-	-	-	-	32	0	0	48	20	41.7	37	8	21.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5	4.260310284	3	2	2	2	1	0.739689716	NA	3	NA	2	NA	0.260310284	2.915670659	0.97189022	3	2.382963863	1.054264045	2.260310284	NA	NA	1	NA	NA	0	4	NA	1	1	1.40E-33	1	1.33E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	49522007	C	A	-	-	-	-	-	-	65	0	0	34	20	58.8	24	4	16.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.347305389	1.173652695	2	1.464912281	1.464912281	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.24E-37	1	0.00000613	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	49556215	C	T	-	-	-	-	-	-	38	0	0	84	17	20.2	36	6	16.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	10.19154907	8.289880778	8	6	2	2	0.808450931	0.710119222	8	6	3	3	0.191549069	0.289880778	2.461080138	0.876312315	2.808450931	2.515322371	0.928122405	2.710119222	NA	NA	1	NA	NA	0	4	NA	1	1	1.42E-22	1	2.68E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	49566326	A	G	DPM1	CCDS13434.1	r.?	-	-	intronic	42	0	0	52	8	15.4	44	6	13.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	5	3	3	3	2	1	1	NA	NA	NA	NA	NA	NA	1.230770459	1.230770459	1	1.600982456	1.600982456	1	NA	NA	1	NA	NA	0	4	NA	1	1	2.42E-10	1	9.37E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	18748412	C	T	HDAC9	CCDS47554.1	r.?	-	-	intronic	38	0	0	67	18	26.9	42	9	21.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7.505836279	4.260310284	5	2	2	2	0.494163721	0.739689716	6	3	2	2	0.505836279	0.260310284	2.554922254	1.01958866	2.505836279	2.360899383	1.044502341	2.260310284	NA	NA	1	NA	NA	0	4	NA	1	1	2.83E-26	1	7.51E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	19328081	C	A	-	-	-	-	-	-	51	0	0	89	27	30.3	45	7	15.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7.505836279	4.260310284	5	2	2	2	0.494163721	0.739689716	6	3	2	2	0.505836279	0.260310284	2.877849231	0.959283077	3	1.721029457	1.721029457	1	NA	NA	1	NA	NA	0	4	NA	1	1	2.66E-40	1	0.000000003	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	49579878	C	T	-	-	-	-	-	-	36	0	0	41	12	29.3	25	2	8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.462660679	1.462660679	1	0.781754386	0.781754386	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.69E-18	1	0.006948068	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	49592057	G	A	-	-	-	-	-	-	56	0	0	30	11	36.7	28	8	28.6	0	0	NA	1	0	0	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.46506986	1.46506986	1	2.50877193	1.254385965	2	0	0	1	NA	NA	1	4	NA	1	1	2.44E-18	1	1.11E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	49623422	G	T	-	-	-	-	-	-	43	0	0	32	15	46.9	24	0	0	119	1	0.8	209	77	36.8	206	39	18.9	3.56E-37	FALSE	TRUE	4	3.588049503	2	2	2	1	1	0.411950497	NA	2	NA	2	NA	0.588049503	2.810255489	1.405127745	2	0	NA	0	2.205061876	1.102530938	2	1.958036093	0.979018046	2	NA	3	1	0.449260015	1.59E-26	1.07E-119	1	1.47E-48	YES	1_1	0_1	somatic	custom.pulldown.HiSeq
PD9852b	5	49629266	T	C	-	-	-	-	-	-	48	0	0	43	16	37.2	38	6	15.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.22902994	1.11451497	2	1.701964912	1.701964912	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.56E-26	1	3.76E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	49631940	A	T	ENSG00000205035	ENST00000357667	r.?	-	-	intronic	52	0	0	39	13	33.3	34	8	23.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.662341317	0.831170659	2	2.296403509	1.148201754	2	NA	NA	1	NA	NA	1	4	NA	1	1	8.79E-21	1	6.32E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	49661562	G	A	-	-	-	-	-	-	45	0	0	34	21	61.8	25	5	20	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.467065868	1.233532934	2	1.754385965	1.754385965	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.16E-40	1	0.000000153	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	49708337	C	A	-	-	-	-	-	-	30	0	0	72	11	15.3	51	10	19.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	1.222778443	1.222778443	1	2.503298246	0.834432749	3	NA	NA	1	NA	NA	1	4	NA	1	1	1.12E-13	1	1.04E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	49741753	C	T	DNAJC22	CCDS8785.1	r.962c>u	c.?	p.?	5'UTR variant	24	0	0	46	17	37	17	2	11.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.847045908	0.923522954	2	1.153087719	1.153087719	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.16E-27	1	0.003234386	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	49769631	G	A	IP6K1	CCDS43092.1	r.?	-	-	intronic	39	0	0	41	19	46.3	34	5	14.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5	5	3	3	2	2	1	1	NA	NA	NA	NA	NA	NA	3.237303393	1.079101131	3	1.730473684	1.730473684	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.20E-33	1	0.000000771	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	49822136	G	A	CDADC1	CCDS9415.1	r.76g>a	c.?	p.?	5'UTR variant	13	0	0	59	15	25.4	13	2	15.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	4	4	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.029972056	1.014986028	2	1.658877193	1.658877193	1	NA	NA	1	NA	NA	0	4	NA	1	1	9.90E-22	1	0.001879825	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	49823304	G	T	-	-	-	-	-	-	59	0	0	66	20	30.3	44	4	9.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	2.421580838	0.807193613	3	1.162245614	1.162245614	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.11E-30	1	0.0000723	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	49827403	A	G	ENSG00000205035	ENST00000357667	r.?	-	-	intronic	52	0	0	43	9	20.9	26	5	19.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.043331337	1.043331337	1	1.876210526	1.876210526	1	NA	NA	1	NA	NA	1	4	NA	1	1	9.45E-13	1	0.000000188	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	49841916	C	A	AGBL4	CCDS44137.1	r.?	-	-	intronic	55	0	0	35	9	25.7	34	1	2.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.282948104	1.282948104	1	0.341385965	0.341385965	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.23E-13	1	0.156694864	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	49854379	C	G	VWC2	CCDS5508.1	r.?	-	-	intronic	44	0	0	71	9	12.7	51	9	17.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	10.19154907	8.289880778	8	6	2	2	0.808450931	0.710119222	8	6	3	3	0.191549069	0.289880778	1.54731276	1.54731276	1	2.650878666	0.978140978	2.710119222	NA	NA	1	NA	NA	0	4	NA	1	1	1.10E-10	1	4.92E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	49862870	G	A	VWC2	CCDS5508.1	r.?	-	-	intronic	44	0	0	94	19	20.2	45	10	22.2	0	0	NA	1	0	0	0	0	NA	1	TRUE	FALSE	10.19154907	8.289880778	8	6	2	2	0.808450931	0.710119222	8	6	3	3	0.191549069	0.289880778	2.461080138	0.876312315	2.808450931	3.343721954	0.901243802	3.710119222	0	0	1	NA	NA	0	4	NA	1	1	4.81E-25	1	2.66E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	49864517	A	G	SPATS2	CCDS31794.1	r.?	-	-	intronic	41	0	0	38	9	23.7	25	3	12	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.183107784	1.183107784	1	1.172631579	1.172631579	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.79E-13	1	0.00026475	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	49876706	G	A	AGBL4	CCDS44137.1	r.?	-	-	intronic	48	0	0	58	27	46.6	32	1	3.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	2.326279441	1.163139721	2	0.364929825	0.364929825	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.68E-46	1	0.14819814	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	20509053	A	C	-	-	-	-	-	-	54	0	0	76	22	28.9	45	5	11.1	124	0	0	698	182	26.1	440	57	13	6.02E-44	TRUE	TRUE	7.505836279	4.260310284	5	2	2	2	0.494163721	0.739689716	6	3	2	2	0.505836279	0.260310284	2.744879299	0.914959766	3	1.224578652	1.224578652	1	2.478939436	0.989266321	2.505836279	1.434191214	1.137966763	1.260310284	4	3	1	1	1.34E-32	3.82E-248	0.00000323	2.78E-60	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	7	49916332	T	C	VWC2	CCDS5508.1	r.?	-	-	intronic	49	0	0	105	15	14.3	57	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	10.19154907	8.289880778	8	6	2	2	0.808450931	0.710119222	8	6	3	3	0.191549069	0.289880778	1.7422498	0.96339346	1.808450931	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	1.11E-17	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	49977895	A	G	-	-	-	-	-	-	47	0	0	35	5	14.3	30	3	10	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3.293619843	2	2	1	1	1	0.706380157	NA	3	NA	1	NA	0.293619843	0.713858283	0.713858283	1	1.006554967	1.006554967	1	NA	NA	1	NA	NA	0	4	NA	1	1	0.000000895	1	0.000458697	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	50019537	A	G	DEFB112	CCDS34476.1	r.?	-	-	upstream	43	0	0	41	19	46.3	32	5	15.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	3.588049503	2	2	2	1	1	0.411950497	NA	2	NA	2	NA	0.588049503	2.774303393	1.387151697	2	1.616156775	1.616156775	1	NA	NA	1	NA	NA	0	4	NA	1	1	4.20E-33	1	0.000000562	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	50023926	C	T	-	-	-	-	-	-	48	0	0	61	12	19.7	35	9	25.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	1.574427146	1.574427146	1	3.282385965	1.094128655	3	NA	NA	1	NA	NA	1	4	NA	1	1	3.39E-16	1	1.23E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	50033404	C	G	-	-	-	-	-	-	54	0	0	43	23	53.5	35	6	17.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	3.588049503	2	2	2	1	1	0.411950497	NA	2	NA	2	NA	0.588049503	3.205728543	1.602864271	2	1.771556465	1.771556465	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.04E-41	1	2.24E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	50038877	T	C	CCNB3	CCDS14331.1	r.?	-	-	intronic	33	0	0	55	6	10.9	28	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	6.241955165	4.32434803	4	2	2	2	0.758044835	0.67565197	4	3	3	2	0.241955165	0.32434803	0.897502854	0.897502854	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	0.000000367	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	50040108	G	C	SETDB2	CCDS9417.1	r.?	-	-	intronic	50	0	0	56	12	21.4	30	3	10	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.282291417	1.282291417	1	1.077192982	1.077192982	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.11E-16	1	0.000458697	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	50042256	C	G	NFATC2	CCDS33488.1	r.?	-	-	intronic	19	0	0	54	18	33.3	19	3	15.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	5	3	3	3	2	1	1	NA	NA	NA	NA	NA	NA	2.661341317	0.887113772	3	1.859964912	1.859964912	1	NA	NA	1	NA	NA	0	4	NA	1	1	3.12E-28	1	0.000114071	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	50042314	G	A	FMNL3	CCDS44874.1	r.?	-	-	intronic	22	0	0	42	6	14.3	32	1	3.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.713858283	0.713858283	1	0.302929825	0.302929825	1	NA	NA	1	NA	NA	1	4	NA	1	1	7.02E-08	1	0.14819814	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	50047463	C	G	-	-	-	-	-	-	56	0	0	39	9	23.1	26	7	26.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.153155689	1.153155689	1	2.628649123	1.314324561	2	NA	NA	1	NA	NA	1	4	NA	1	1	3.62E-13	1	4.73E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	50055878	C	T	-	-	-	-	-	-	55	0	0	55	5	9.1	40	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	0.727273453	0.727273453	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.00000883	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	50066052	G	A	-	-	-	-	-	-	46	0	0	55	13	23.6	33	6	18.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	1.886115768	0.943057884	2	2.324491228	1.162245614	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.46E-18	1	1.54E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	50186625	C	T	-	-	-	-	-	-	15	0	0	56	18	32.1	28	3	10.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5	5	3	3	2	2	1	1	NA	NA	NA	NA	NA	NA	2.244437126	1.122218563	2	1.259596491	1.259596491	1	NA	NA	1	NA	NA	1	4	NA	1	1	6.76E-28	1	0.000372895	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	50187776	C	T	-	-	-	-	-	-	60	0	0	68	25	36.8	34	6	17.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	3.588049503	2	2	2	1	1	0.411950497	NA	2	NA	2	NA	0.588049503	2.205061876	1.102530938	2	1.823356362	1.823356362	1	NA	NA	1	NA	NA	0	4	NA	1	1	6.41E-40	1	1.86E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	50222296	C	T	-	-	-	-	-	-	31	0	0	43	7	16.3	34	5	14.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	8	4	5	2	3	1	1	NA	NA	NA	NA	NA	NA	1.302698603	1.302698603	1	2.171473684	2.171473684	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.15E-09	1	0.000000771	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	50228219	A	T	BCDIN3D	CCDS8790.1	r.?	-	-	downstream	35	0	0	34	7	20.6	32	4	12.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.028355289	1.028355289	1	1.221491228	1.221491228	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.73E-10	1	0.0000201	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	50229408	A	T	AGBL4	CCDS44137.1	r.?	-	-	intronic	34	0	0	38	9	23.7	27	4	14.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.183107784	1.183107784	1	1.742245614	1.742245614	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.79E-13	1	0.00001	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	20519454	C	A	-	-	-	-	-	-	48	0	0	68	19	27.9	41	7	17.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7.505836279	4.260310284	5	2	2	2	0.494163721	0.739689716	6	3	2	2	0.505836279	0.260310284	2.649900777	1.057491584	2.505836279	1.886513059	1.886513059	1	NA	NA	1	NA	NA	0	4	NA	1	1	5.06E-28	1	1.51E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	22	50257038	A	T	ZBED4	CCDS33677.1	r.?	-	-	intronic	28	0	0	34	9	26.5	26	1	3.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.292921926	5	3	4	0	1	0.707078074	1	3	NA	1	NA	0.292921926	NA	1.400508542	1.400508542	1	0.447333333	0.447333333	1	NA	NA	0	NA	NA	1	4	NA	1	1	9.15E-14	1	0.122190858	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	50262020	G	T	TSKS	CCDS12780.1	r.?	-	-	intronic	25	0	0	36	4	11.1	22	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	8	4	5	2	3	1	1	NA	NA	NA	NA	NA	NA	0.887113772	0.887113772	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	0.0000324	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	50276057	C	G	GNAI2	CCDS2813.1	r.?	-	-	intronic	18	0	0	48	13	27.1	26	8	30.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5	5	3	3	2	2	1	1	NA	NA	NA	NA	NA	NA	1.894836327	0.947418164	2	3.625754386	1.208584795	3	NA	NA	1	NA	NA	1	4	NA	1	1	2.00E-19	1	5.63E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	50283363	G	C	-	-	-	-	-	-	51	0	0	102	5	4.9	58	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	10.19154907	8.289880778	8	6	2	2	0.808450931	0.710119222	8	6	3	3	0.191549069	0.289880778	0.596994687	0.596994687	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	0.000174019	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	50296632	C	A	FAIM2	CCDS8791.1	r.?	-	-	intronic	29	0	0	41	17	41.5	20	3	15	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	2.071686627	1.035843313	2	1.465789474	1.465789474	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.03E-28	1	0.0001337	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	50343539	T	C	FAM170B	ENST00000311787	r.?	-	-	upstream	31	0	0	59	16	27.1	35	0	0	0	0	NA	0	0	NA	2	0	0	1	TRUE	FALSE	4.297222263	4	2	2	2	2	0.702777737	1	3	NA	2	NA	0.297222263	NA	1.704383561	0.85219178	2	0	0	1	NA	NA	1	0	0	1	3	NA	1	1	1.37E-23	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	50368915	T	A	C10orf128	CCDS41519.1	r.?	-	-	intronic	50	0	0	55	11	20	32	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.297222263	4	2	2	2	2	0.702777737	1	3	NA	2	NA	0.297222263	NA	1.257847646	1.257847646	1	0	0	1	NA	NA	0	NA	NA	0	3	NA	1	1	4.77E-15	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	50393219	G	C	ATP8B4	CCDS32238.1	r.?	-	-	intronic	49	0	0	49	8	16.3	34	3	8.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3.293619843	2	2	1	1	1	0.706380157	NA	3	NA	1	NA	0.293619843	0.813698603	0.813698603	1	0.885768371	0.885768371	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.47E-10	1	0.000666058	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	50417782	G	A	DCC	CCDS11952.1	r.?	-	-	intronic	48	0	0	35	5	14.3	30	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.570858283	0.570858283	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.000000895	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	50441363	C	T	-	-	-	-	-	-	48	0	0	46	16	34.8	30	5	16.7	1	0	0	0	0	NA	0	0	NA	1	TRUE	FALSE	4	3.588049503	2	2	2	1	1	0.411950497	NA	2	NA	2	NA	0.588049503	2.085221557	1.042610778	2	1.730116548	1.730116548	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.31E-25	1	0.000000401	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	17	50442651	T	C	-	-	-	-	-	-	57	0	0	39	5	12.8	26	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.510978044	0.510978044	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.00000156	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	50474999	G	C	CACNA2D2	CCDS33763.1	r.?	-	-	intronic	23	0	0	56	21	37.5	25	2	8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5	5	3	3	2	2	1	1	NA	NA	NA	NA	NA	NA	2.622005988	0.874001996	3	0.941754386	0.941754386	1	NA	NA	1	NA	NA	1	4	NA	1	1	5.43E-34	1	0.006948068	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	50478866	G	A	VRK3	CCDS12791.1	r.?	-	-	downstream	27	0	0	35	10	28.6	35	12	34.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	8	4	5	2	3	1	1	NA	NA	NA	NA	NA	NA	2.285716567	1.142858283	2	5.06677193	1.013354386	5	NA	NA	0	NA	NA	1	4	NA	1	1	1.60E-15	1	1.83E-19	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	50493708	T	C	SMARCD1	CCDS8797.2	r.2643u>c	c.?	p.?	3'UTR variant	28	0	0	32	8	25	21	1	4.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.248003992	1.248003992	1	0.469052632	0.469052632	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.69E-12	1	0.099912572	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	50526288	T	G	SLC27A2	CCDS10133.1	r.?	-	-	intronic	31	0	0	38	18	47.4	30	7	23.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3.293619843	2	2	1	1	1	0.706380157	NA	3	NA	1	NA	0.293619843	2.366215569	1.183107784	2	2.345273073	1.022520397	2.293619843	NA	NA	1	NA	NA	0	4	NA	1	1	1.16E-31	1	1.44E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	50576302	G	C	-	-	-	-	-	-	58	0	0	45	12	26.7	35	6	17.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.599868263	1.599868263	1	1.842	1.842	1	NA	NA	1	NA	NA	1	4	NA	1	1	6.03E-18	1	2.24E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	50576923	C	A	TRIM13	CCDS9423.1	r.?	-	-	intronic	35	0	0	48	6	12.5	25	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.749001996	0.749001996	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.00000016	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	50620872	A	T	-	-	-	-	-	-	32	1	3.1	51	29	56.9	37	11	29.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6.241955165	4.32434803	4	2	2	2	0.758044835	0.67565197	4	3	3	2	0.241955165	0.32434803	4.685129575	1.171282394	4	3.295594523	1.417857601	2.32434803	NA	NA	1	NA	NA	0	4	NA	0.14819814	1	2.61E-53	1	3.70E-17	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	50683309	C	A	DCC	CCDS11952.1	r.?	-	-	intronic	55	0	0	36	16	44.4	24	7	29.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.77245509	0.886227545	2	2.561403509	1.280701754	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.01E-27	1	2.51E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	50718169	G	C	-	-	-	-	-	-	51	0	0	60	34	56.7	28	8	28.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6.241955165	4.32434803	4	2	2	2	0.758044835	0.67565197	4	3	3	2	0.241955165	0.32434803	4.668661633	1.167165408	4	3.173535466	1.365344357	2.32434803	NA	NA	1	NA	NA	0	4	NA	1	1	3.58E-62	1	1.11E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	50746304	T	C	NRXN1	CCDS46282.1	r.?	-	-	intronic	63	0	0	66	22	33.3	39	5	12.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	2.661341317	0.887113772	3	1.634807018	1.634807018	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.52E-34	1	0.00000156	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	20698695	C	A	ABCB5	CCDS5371.1	r.?	-	-	intronic	47	0	0	106	39	36.8	62	8	12.9	331	0	0	776	258	33.2	599	99	16.5	1.28E-85	TRUE	TRUE	7.505836279	4.260310284	5	2	2	2	0.494163721	0.739689716	6	3	2	2	0.505836279	0.260310284	3.495209627	0.996968868	3.505836279	1.423158974	1.423158974	1	3.153286946	1.051095649	3	1.820319618	0.910159809	2	4	3	1	1	2.02E-61	0	1.04E-09	2.45E-114	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	5	50843375	G	T	-	-	-	-	-	-	39	0	0	39	13	33.3	35	4	11.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.995341317	0.997670659	2	1.228	1.228	1	NA	NA	1	NA	NA	1	4	NA	1	1	8.79E-21	1	0.0000289	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	50918642	C	T	DOCK3	CCDS46835.1	r.?	-	-	intronic	44	0	0	37	11	29.7	34	9	26.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5	5	3	3	2	2	1	1	NA	NA	NA	NA	NA	NA	2.076628743	1.038314371	2	3.119561404	1.039853801	3	NA	NA	1	NA	NA	1	4	NA	1	1	3.70E-17	1	9.15E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	50933183	C	G	-	-	-	-	-	-	50	0	0	52	7	13.5	29	5	17.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	5.626372055	2	3	2	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	0.808922156	0.808922156	1	2.132507923	2.132507923	1	NA	NA	0	NA	NA	0	4	NA	1	1	8.58E-09	1	0.000000336	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	20701039	C	G	ABCB5	CCDS5371.1	r.?	-	-	intronic	52	0	0	90	36	40	34	8	23.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7.505836279	4.260310284	5	2	2	2	0.494163721	0.739689716	6	3	2	2	0.505836279	0.260310284	3.799140899	0.949785225	4	2.592576425	1.147000234	2.260310284	NA	NA	1	NA	NA	0	4	NA	1	1	1.93E-58	1	6.32E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	23426531	C	T	IGF2BP3	CCDS5382.1	r.?	-	-	intronic	45	0	0	67	29	43.3	38	10	26.3	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	NA	8.289880778	NA	6	NA	2	NA	0.710119222	NA	6	NA	3	NA	0.289880778	NA	NA	1	3.961256188	0.990314047	4	NA	NA	1	NA	NA	0	NA	NA	1	1	1.22E-48	1	4.06E-15	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	51019407	G	A	ATL1	CCDS32077.1	r.?	-	-	intronic	61	0	0	37	10	27	28	1	3.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.077844311	1.077844311	1	0.315789474	0.315789474	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.01E-15	1	0.130947004	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	23428686	C	T	IGF2BP3	CCDS5382.1	r.?	-	-	intronic	39	0	0	75	26	34.7	55	18	32.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	10.19837984	8.289880778	8	6	2	2	0.801620163	0.710119222	8	6	3	3	0.198379837	0.289880778	4.230067344	1.057516836	4	4.925212067	0.985042413	5	NA	NA	1	NA	NA	0	4	NA	1	1	1.19E-40	1	4.61E-28	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	51041729	C	T	PARG	ENST00000402038	r.?	-	-	intronic	48	0	0	34	10	29.4	32	6	18.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.297222263	4	2	2	2	2	0.702777737	1	3	NA	2	NA	0.297222263	NA	1.84903604	0.92451802	2	2.025122807	2.025122807	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.15E-15	1	1.27E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	51113557	T	C	-	-	-	-	-	-	40	0	0	27	11	40.7	29	3	10.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3.293619843	2	2	1	1	1	0.706380157	NA	3	NA	1	NA	0.293619843	2.031750499	1.01587525	2	1.036751616	1.036751616	1	NA	NA	1	NA	NA	0	4	NA	1	1	5.92E-19	1	0.000414371	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	51135748	G	T	SYT3	CCDS12798.1	r.1103c>a	c.469C>A	p.P157T	missense	12	0	0	45	12	26.7	16	4	25	198	0	0	63	11	17.5	37	10	27	2.72E-12	TRUE	TRUE	6	8	4	5	2	3	1	1	NA	NA	NA	NA	NA	NA	2.133868263	1.066934132	2	3.692982456	0.923245614	4	1.398602794	1.398602794	1	3.988421053	0.997105263	4	4	3	1	1	6.03E-18	2.37E-14	0.00000108	3.01E-15	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	7	23429352	C	T	IGF2BP3	CCDS5382.1	r.?	-	-	intronic	52	0	0	91	38	41.8	48	10	20.8	80	1	1.2	298	76	25.5	262	50	19.1	2.26E-47	TRUE	TRUE	10.19837984	8.289880778	8	6	2	2	0.801620163	0.710119222	8	6	3	3	0.198379837	0.289880778	5.095585446	1.019117089	5	3.132856605	1.044285535	3	3.10855093	1.036183643	3	2.876805825	0.958935275	3	4	3	1	0.33035218	1.70E-62	7.13E-104	5.37E-14	5.70E-62	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	7	51205765	G	T	COBL	CCDS34637.1	r.?	-	-	intronic	55	0	0	102	12	11.8	65	7	10.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	10.19154907	8.289880778	8	6	2	2	0.808450931	0.710119222	8	6	3	3	0.191549069	0.289880778	1.437660674	1.437660674	1	1.626675545	1.626675545	1	NA	NA	1	NA	NA	0	4	NA	1	1	2.18E-13	1	4.22E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	51214817	G	A	COBL	CCDS34637.1	r.?	-	-	intronic	19	0	0	85	23	27.1	45	3	6.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	10.19154907	8.289880778	8	6	2	2	0.808450931	0.710119222	8	6	3	3	0.191549069	0.289880778	3.301746125	1.100582042	3	1.00914131	1.00914131	1	NA	NA	0	NA	NA	0	4	NA	1	1	3.06E-33	1	0.001516071	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	51238521	T	C	NRXN1	CCDS46282.1	r.?	-	-	intronic	45	0	0	69	15	21.7	41	4	9.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	1.734267465	0.867133733	2	1.251649123	1.251649123	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.34E-20	1	0.0000546	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	23432492	C	A	IGF2BP3	CCDS5382.1	r.?	-	-	intronic	57	0	0	94	37	39.4	45	13	28.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	10.19837984	8.289880778	8	6	2	2	0.801620163	0.710119222	8	6	3	3	0.198379837	0.289880778	4.803015947	1.00029069	4.801620163	4.352863264	0.924151398	4.710119222	NA	NA	1	NA	NA	0	4	NA	1	1	1.07E-59	1	7.68E-20	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	25421156	A	T	-	-	-	-	-	-	63	0	0	84	10	11.9	53	3	5.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	10.19837984	8.289880778	8	6	2	2	0.801620163	0.710119222	8	6	3	3	0.198379837	0.289880778	1.450657101	1.450657101	1	0.858523204	0.858523204	1	NA	NA	0	NA	NA	0	4	NA	1	1	1.93E-11	1	0.002429596	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	51294174	C	T	-	-	-	-	-	-	60	0	0	45	5	11.1	45	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	6	5	3	3	3	2	1	1	NA	NA	NA	NA	NA	NA	0.887113772	0.887113772	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	0.00000323	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	51294775	A	G	-	-	-	-	-	-	52	0	0	64	16	25	36	8	22.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	1.998003992	0.999001996	2	2.835368421	0.945122807	3	NA	NA	1	NA	NA	1	4	NA	1	1	5.94E-23	1	1.04E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	51313596	G	A	-	-	-	-	-	-	52	0	0	47	19	40.4	32	5	15.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	3.588049503	2	2	2	1	1	0.411950497	NA	2	NA	2	NA	0.588049503	2.420774451	1.210387226	2	1.616156775	1.616156775	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.16E-31	1	0.000000562	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	51314667	G	A	-	-	-	-	-	-	50	0	0	45	14	31.1	33	5	15.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	5.626372055	2	3	2	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	1.863516966	0.931758483	2	1.884541886	1.884541886	1	NA	NA	0	NA	NA	1	4	NA	1	1	8.81E-22	1	0.00000066	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	51322711	C	A	-	-	-	-	-	-	42	0	0	51	17	33.3	32	9	28.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	5	3	3	3	2	1	1	NA	NA	NA	NA	NA	NA	2.661341317	0.887113772	3	3.307912281	1.102637427	3	NA	NA	1	NA	NA	0	4	NA	1	1	9.59E-27	1	4.94E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	51404064	G	A	DLEU7	ENST00000400393	r.?	-	-	intronic	50	0	0	40	10	25	32	4	12.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.498003992	1.498003992	1	1.346491228	1.346491228	1	NA	NA	1	NA	NA	1	4	NA	1	1	7.22E-15	1	0.0000201	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	51506619	C	G	KLK9	CCDS12816.1	r.?	-	-	intronic	17	0	0	42	5	11.9	28	0	0	2	0	0	0	0	NA	2	0	0	1	TRUE	FALSE	6	8	4	5	2	3	1	1	NA	NA	NA	NA	NA	NA	0.9510499	0.9510499	1	0	0	1	NA	NA	0	0	0	1	3	NA	1	1	0.00000228	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	51515201	C	T	TFCP2	CCDS8808.1	r.?	-	-	intronic	29	0	0	34	10	29.4	27	2	7.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.467652695	1.467652695	1	0.723122807	0.723122807	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.15E-15	1	0.00807567	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	51523972	G	A	SNTG1	CCDS6147.1	r.?	-	-	intronic	46	0	0	29	10	34.5	20	2	10	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1	2.620991218	1	2	0	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.032245509	1.032245509	1	0.939292104	0.939292104	1	NA	NA	0	NA	NA	0	4	NA	1	1	1.79E-16	1	0.004473894	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	51533629	C	T	-	-	-	-	-	-	62	0	0	56	12	21.4	49	8	16.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	5.626372055	2	3	2	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	1.282291417	1.282291417	1	2.020923206	1.010461603	2	NA	NA	0	NA	NA	1	4	NA	1	1	1.11E-16	1	1.47E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	51542327	C	G	SNTG1	CCDS6147.1	r.?	-	-	intronic	66	0	0	23	12	52.2	40	5	12.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1	2.620991218	1	2	0	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.561832335	1.561832335	1	1.17411513	1.17411513	1	NA	NA	0	NA	NA	0	4	NA	1	1	3.14E-22	1	0.00000178	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	51542909	G	C	-	-	-	-	-	-	42	0	0	45	12	26.7	28	4	14.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	2.133868263	1.066934132	2	1.826385965	1.826385965	1	NA	NA	1	NA	NA	1	4	NA	1	1	6.03E-18	1	0.0000116	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	51590195	A	G	-	-	-	-	-	-	53	0	0	52	14	26.9	51	9	17.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	5.626372055	2	3	2	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	1.611852295	0.805926148	2	2.182101131	0.919310516	2.373627945	NA	NA	0	NA	NA	0	4	NA	1	1	9.04E-21	1	4.92E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	26544015	T	G	-	-	-	-	-	-	33	0	0	85	32	37.6	47	10	21.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	10.19837984	8.289880778	8	6	2	2	0.801620163	0.710119222	8	6	3	3	0.198379837	0.289880778	4.583588823	0.954592131	4.801620163	3.208165658	1.069388553	3	NA	NA	0	NA	NA	0	4	NA	1	1	4.51E-51	1	4.27E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	51629210	C	T	DAZAP2	CCDS8809.1	r.?	-	-	upstream	41	0	0	37	8	21.6	38	1	2.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.078275449	1.078275449	1	0.254070175	0.254070175	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.33E-11	1	0.173434892	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	51631579	T	C	-	-	-	-	-	-	40	0	0	40	7	17.5	25	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.048602794	1.048602794	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	1.26E-09	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	51650482	C	T	-	-	-	-	-	-	62	0	0	59	16	27.1	35	5	14.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	2.165836327	1.082918164	2	1.826385965	1.826385965	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.37E-23	1	0.000000895	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	51661160	T	C	-	-	-	-	-	-	60	0	0	69	21	30.4	47	4	8.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	2.429572854	0.809857618	3	1.085614035	1.085614035	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.02E-31	1	0.0000939	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	51675069	A	G	-	-	-	-	-	-	60	0	0	52	5	9.6	43	0	0	0	0	NA	0	0	NA	2	0	0	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.575233533	0.575233533	1	0	0	1	NA	NA	1	0	0	1	3	NA	1	1	0.00000668	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	189684357	T	A	-	-	-	-	-	-	51	0	0	57	20	35.1	30	5	16.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	2.277661109	2	1	2	1	1	0.722338891	NA	2	NA	1	NA	0.277661109	2.103197605	1.051598802	2	1.511281686	1.511281686	1	NA	NA	1	NA	NA	0	4	NA	1	1	9.67E-32	1	0.000000401	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	51683313	T	A	-	-	-	-	-	-	33	0	0	58	6	10.3	37	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	5.626372055	2	3	2	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	0.617177645	0.617177645	1	0	0	1	NA	NA	0	NA	NA	0	3	NA	1	1	0.000000506	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	51740776	T	C	-	-	-	-	-	-	56	0	0	61	13	21.3	37	4	10.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	1.702299401	0.851149701	2	1.379368421	1.379368421	1	NA	NA	1	NA	NA	1	4	NA	1	1	6.41E-18	1	0.0000362	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	51824652	C	T	IGLON5	CCDS46158.1	r.?	-	-	intronic	32	0	0	52	25	48.1	38	11	28.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	8	4	5	2	3	1	1	NA	NA	NA	NA	NA	NA	3.844159681	0.96103992	4	4.269087719	1.06727193	4	NA	NA	0	NA	NA	1	4	NA	1	1	1.25E-43	1	5.19E-17	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	51849434	C	T	ETFB	CCDS33085.1	r.?	-	-	intronic	44	0	0	52	14	26.9	38	4	10.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	8	4	5	2	3	1	1	NA	NA	NA	NA	NA	NA	2.149852295	1.074926148	2	1.551052632	1.551052632	1	NA	NA	0	NA	NA	1	4	NA	1	1	9.04E-21	1	0.0000403	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	51923766	G	C	-	-	-	-	-	-	56	0	0	34	13	38.2	44	5	11.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3.293619843	2	2	1	1	1	0.706380157	NA	3	NA	1	NA	0.293619843	1.9069501	0.95347505	2	1.147472662	1.147472662	1	NA	NA	0	NA	NA	0	4	NA	1	1	1.03E-21	1	0.00000288	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	51941803	A	T	-	-	-	-	-	-	43	0	0	29	16	55.2	36	12	33.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.203592814	1.101796407	2	2.921052632	1.460526316	2	NA	NA	1	NA	NA	1	4	NA	1	1	9.74E-30	1	2.73E-19	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	51957430	G	A	INTS6	CCDS41890.1	r.?	-	-	intronic	42	0	0	62	6	9.7	22	1	4.5	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	6	4	4	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.775225549	0.775225549	1	0.484736842	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	0.000000756	1	0.104413009	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	26952830	G	A	SKAP2	ENST00000432747	r.?	-	-	intronic	49	0	0	78	7	9	46	3	6.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	10.19837984	8.289880778	8	6	2	2	0.801620163	0.710119222	8	6	3	3	0.198379837	0.289880778	1.097135622	1.097135622	1	0.979017689	0.979017689	1	NA	NA	1	NA	NA	0	4	NA	1	1	0.000000151	1	0.001615827	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	52015715	A	T	-	-	-	-	-	-	39	0	0	65	11	16.9	37	4	10.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6.720534823	4.32434803	5	2	1	2	0.279465177	0.67565197	5	3	2	2	0.720534823	0.32434803	1.472421084	1.472421084	1	1.198398008	1.198398008	1	NA	NA	0	NA	NA	0	4	NA	1	1	3.41E-14	1	0.0000362	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	52019577	C	T	SCN8A	CCDS44891.1	r.?	-	-	intronic	37	0	0	35	8	22.9	26	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.143171657	1.143171657	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	8.15E-12	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	52037931	T	C	SIGLEC6	CCDS12834.3	r.?	-	-	upstream	59	0	0	53	8	15.1	50	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	8	4	5	2	3	1	1	NA	NA	NA	NA	NA	NA	1.206794411	1.206794411	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	2.83E-10	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	52041128	G	A	-	-	-	-	-	-	32	0	0	48	14	29.2	23	4	17.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	3.588049503	2	2	2	1	1	0.411950497	NA	2	NA	2	NA	0.588049503	1.749668663	0.874834331	2	1.802636403	1.802636403	1	NA	NA	1	NA	NA	0	4	NA	1	1	2.51E-21	1	0.00000513	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	52044688	C	T	-	-	-	-	-	-	49	0	0	49	10	20.4	35	1	2.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.297222263	4	2	2	2	2	0.702777737	1	3	NA	2	NA	0.297222263	NA	1.283004599	1.283004599	1	0.312385965	0.312385965	1	NA	NA	1	NA	NA	0	4	NA	1	1	6.72E-14	1	0.16091139	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	52060381	T	C	SGMS1	CCDS7240.1	r.?	-	-	downstream	61	0	0	57	17	29.8	45	13	28.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.297222263	4	2	2	2	2	0.702777737	1	3	NA	2	NA	0.297222263	NA	1.874192993	0.937096496	2	3.113087719	1.55654386	2	NA	NA	0	NA	NA	0	4	NA	1	1	8.82E-26	1	7.68E-20	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	52079041	G	A	FRMD6	CCDS9704.1	r.?	-	-	intronic	42	0	0	25	11	44	27	8	29.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.756487026	0.878243513	2	2.596491228	1.298245614	2	NA	NA	1	NA	NA	1	4	NA	1	1	2.04E-19	1	7.97E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	52082156	A	G	-	-	-	-	-	-	45	0	0	32	8	25	22	4	18.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	1.998003992	0.999001996	2	2.324491228	2.324491228	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.69E-12	1	0.00000425	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	52105273	C	G	-	-	-	-	-	-	42	0	0	53	6	11.3	40	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	6	4	4	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.903097804	0.903097804	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	0.000000293	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	52106313	G	T	SGMS1	CCDS7240.1	r.?	-	-	intronic	34	0	0	59	5	8.5	33	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.297222263	4	2	2	2	2	0.702777737	1	3	NA	2	NA	0.297222263	NA	0.53458525	0.53458525	1	0	0	1	NA	NA	1	NA	NA	0	3	NA	1	1	0.0000125	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	52108787	G	A	-	-	-	-	-	-	56	0	0	56	14	25	42	4	9.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	1.998003992	0.999001996	2	1.213333333	1.213333333	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.91E-20	1	0.0000601	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	17	52178964	T	C	-	-	-	-	-	-	42	0	0	33	21	63.6	28	9	32.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.538922156	1.269461078	2	2.815789474	1.407894737	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.60E-40	1	1.24E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	52183288	G	A	ZNF217	CCDS13443.1	r.?	-	-	downstream	12	0	0	57	17	29.8	37	6	16.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	5	3	3	3	2	1	1	NA	NA	NA	NA	NA	NA	2.381620758	1.190810379	2	1.907052632	1.907052632	1	NA	NA	1	NA	NA	0	4	NA	1	1	8.82E-26	1	3.18E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	29274696	C	A	CHN2	CCDS5420.1	r.?	-	-	intronic	49	0	0	98	10	10.2	58	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	10.19837984	8.289880778	8	6	2	2	0.801620163	0.710119222	8	6	3	3	0.198379837	0.289880778	1.243420372	1.243420372	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	9.17E-11	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	52362569	T	A	ITGA2	CCDS3957.1	r.?	-	-	intronic	48	0	0	54	14	25.9	36	6	16.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.551932136	1.551932136	1	1.798912281	1.798912281	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.64E-20	1	2.68E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	52221791	C	T	SGMS1	CCDS7240.1	r.?	-	-	intronic	47	0	0	51	7	13.7	27	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.297222263	4	2	2	2	2	0.702777737	1	3	NA	2	NA	0.297222263	NA	0.861625638	0.861625638	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	7.46E-09	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	52228051	C	T	-	-	-	-	-	-	44	0	0	76	22	28.9	46	5	10.9	0	0	NA	1	0	0	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	2.309692615	1.154846307	2	1.392140351	1.392140351	1	0	0	1	NA	NA	1	4	NA	1	1	1.34E-32	1	0.00000361	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	29678539	T	G	-	-	-	-	-	-	41	0	0	87	23	26.4	36	6	16.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	10.19837984	8.289880778	8	6	2	2	0.801620163	0.710119222	8	6	3	3	0.198379837	0.289880778	3.218264492	1.072754831	3	2.515322371	0.928122405	2.710119222	NA	NA	1	NA	NA	0	4	NA	1	1	5.63E-33	1	2.68E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	52303568	C	A	ACVRL1	CCDS31804.1	r.?	-	-	intronic	46	0	0	35	7	20	37	6	16.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.998403194	0.998403194	1	1.583052632	1.583052632	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.65E-10	1	3.18E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	97163336	G	A	-	-	-	-	-	-	44	0	0	69	16	23.2	44	6	13.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.390147705	1.390147705	1	1.464982456	1.464982456	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.27E-22	1	9.37E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	52385244	G	T	GNG2	CCDS32082.1	r.?	-	-	intronic	48	0	0	31	10	32.3	24	6	25	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.289421158	1.289421158	1	2.192982456	1.096491228	2	NA	NA	1	NA	NA	1	4	NA	1	1	3.94E-16	1	1.95E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	29810281	G	T	-	-	-	-	-	-	34	0	0	88	18	20.5	43	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	10.19837984	8.289880778	8	6	2	2	0.801620163	0.710119222	8	6	3	3	0.198379837	0.289880778	2.49903114	0.891994987	2.801620163	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	6.62E-24	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	52426651	C	A	ZNF613	CCDS12844.1	r.?	-	-	upstream	42	0	0	45	5	11.1	30	6	20	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	8	4	5	2	3	1	1	NA	NA	NA	NA	NA	NA	0.887113772	0.887113772	1	2.954385965	0.984795322	3	NA	NA	0	NA	NA	1	4	NA	1	1	0.00000323	1	8.37E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	52457890	G	A	AC011460.1	ENST00000500242	r.?	-	-	intronic	46	0	0	50	29	58	48	13	27.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	8	4	5	2	3	1	1	NA	NA	NA	NA	NA	NA	4.635369261	1.158842315	4	4.003192982	1.000798246	4	NA	NA	0	NA	NA	1	4	NA	1	1	1.13E-53	1	2.00E-19	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	52511045	T	C	-	-	-	-	-	-	40	0	0	55	18	32.7	34	5	14.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.959389222	0.979694611	2	1.583473684	1.583473684	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.61E-28	1	0.000000771	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	100907144	G	A	-	-	-	-	-	-	45	0	0	29	6	20.7	31	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.826347305	0.826347305	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	6.72E-09	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	52598618	A	C	AC068987.1	ENST00000513193	r.?	-	-	intronic	23	0	0	54	12	22.2	32	4	12.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.108227545	1.108227545	1	1.221491228	1.221491228	1	NA	NA	1	NA	NA	1	4	NA	1	1	6.90E-17	1	0.0000201	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	52601315	C	G	-	-	-	-	-	-	50	0	0	70	40	57.1	47	16	34	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	4.563441118	1.140860279	4	4.34245614	1.085614035	4	NA	NA	1	NA	NA	1	4	NA	1	1	4.35E-73	1	1.98E-25	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	52625190	G	A	-	-	-	-	-	-	37	0	0	52	24	46.2	23	3	13	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.768311377	1.384155689	2	1.400350877	1.400350877	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.22E-41	1	0.000205387	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	52728493	A	T	-	-	-	-	-	-	56	0	0	105	17	16.2	65	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	10.19154907	8.289880778	8	6	2	2	0.808450931	0.710119222	8	6	3	3	0.191549069	0.289880778	1.973737536	0.986868768	2	0	NA	0	NA	NA	0	NA	NA	0	NA	NA	1	1	8.25E-21	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	52736578	C	A	-	-	-	-	-	-	22	0	0	19	3	15.8	9	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.297222263	4	2	2	2	2	0.702777737	1	3	NA	2	NA	0.297222263	NA	0.993699641	0.993699641	1	0	0	1	NA	NA	1	NA	NA	0	4	NA	1	1	0.000114071	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	31546603	T	C	-	-	-	-	-	-	13	0	0	100	19	19	40	9	22.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	10.19837984	8.289880778	8	6	2	2	0.801620163	0.710119222	8	6	3	3	0.198379837	0.289880778	2.316175203	1.158087601	2	3.388907386	0.913422772	3.710119222	NA	NA	1	NA	NA	0	4	NA	1	1	1.72E-24	1	4.64E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	52776673	C	A	CYP24A1	CCDS33491.1	r.?	-	-	intronic	50	0	0	37	10	27	31	9	29	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	5	3	3	3	2	1	1	NA	NA	NA	NA	NA	NA	2.157844311	1.078922156	2	3.413859649	1.137953216	3	NA	NA	1	NA	NA	0	4	NA	1	1	3.01E-15	1	3.57E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	52790771	C	A	-	-	-	-	-	-	52	0	0	94	17	18.1	33	3	9.1	0	0	NA	1	0	0	0	0	NA	1	TRUE	FALSE	10.19154907	8.289880778	8	6	2	2	0.808450931	0.710119222	8	6	3	3	0.191549069	0.289880778	2.205225272	1.102612636	2	1.370624765	1.370624765	1	0	0	1	NA	NA	0	4	NA	1	1	1.12E-21	1	0.000609557	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	52842321	G	T	ITIH4	CCDS2865.1	r.?	-	-	downstream	17	0	0	24	9	37.5	32	4	12.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.676797438	5	3	3	0	2	0.323202562	1	3	NA	1	NA	0.676797438	NA	2.125805027	1.062902514	2	1.471491228	1.471491228	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.39E-15	1	0.0000201	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	52857319	G	T	KRT6C	CCDS8829.1	r.?	-	-	downstream	42	0	0	40	9	22.5	42	7	16.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.123203593	1.123203593	1	1.631912281	1.631912281	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.64E-13	1	1.81E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	52870834	G	A	-	-	-	-	-	-	46	0	0	82	18	22	42	5	11.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	10.19154907	8.289880778	8	6	2	2	0.808450931	0.710119222	8	6	3	3	0.191549069	0.289880778	2.680384308	0.954399551	2.808450931	1.792355462	1.792355462	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.65E-24	1	0.00000228	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	52878863	A	G	NDUFS4	CCDS3960.1	r.?	-	-	intronic	30	0	0	46	6	13	28	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	6	4	4	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.038962076	1.038962076	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	0.000000123	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	52881604	C	T	KIAA1370	CCDS45263.1	r.?	-	-	intronic	40	0	0	46	10	21.7	27	1	3.7	153	0	0	333	55	16.5	321	3	0.9	0.62344385	TRUE	FALSE	3	3.293619843	2	2	1	1	1	0.706380157	NA	3	NA	1	NA	0.293619843	1.083267465	1.083267465	1	0.372425338	0.372425338	1	0.823682635	0.823682635	1	0.090589947	NA	0	4	NA	1	1	3.38E-14	2.68E-64	0.126579904	0.217677305	YES	1_1	0_0	somatic	custom.pulldown.HiSeq
PD9852b	2	52910517	C	G	-	-	-	-	-	-	50	0	0	59	10	16.9	36	4	11.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	1.350650699	1.350650699	1	1.417684211	1.417684211	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.91E-13	1	0.0000324	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	52940132	C	T	-	-	-	-	-	-	36	0	0	54	8	14.8	35	2	5.7	0	0	NA	0	0	NA	2	0	0	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	1.182818363	1.182818363	1	0.728	0.728	1	NA	NA	1	0	0	1	4	NA	1	1	3.31E-10	1	0.013332991	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	52963515	G	T	THSD1	CCDS9433.1	r.?	-	-	intronic	50	0	0	61	21	34.4	29	3	10.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.061253493	1.030626747	2	1.109508772	1.109508772	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.80E-33	1	0.000414371	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	34050072	A	G	BMPER	CCDS5442.1	r.?	-	-	intronic	46	0	0	106	24	22.6	51	7	13.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	10.19837984	8.289880778	8	6	2	2	0.801620163	0.710119222	8	6	3	3	0.198379837	0.289880778	2.755029452	0.983370083	2.801620163	2.063468053	1.031734026	2	NA	NA	0	NA	NA	0	4	NA	1	1	1.56E-32	1	7.46E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	52983873	T	A	-	-	-	-	-	-	43	0	0	94	6	6.4	42	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	0.511489022	0.511489022	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.00000873	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	53024960	C	G	SFMBT1	CCDS2867.1	r.?	-	-	intronic	53	0	0	46	7	15.2	38	2	5.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	0.812614613	0.812614613	1	0.623912281	0.623912281	1	NA	NA	0	NA	NA	1	4	NA	1	1	3.53E-09	1	0.015598339	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	53043208	C	A	-	-	-	-	-	-	60	0	0	87	36	41.4	61	23	37.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	10.19154907	8.289880778	8	6	2	2	0.808450931	0.710119222	8	6	3	3	0.191549069	0.289880778	5.043995925	1.008799185	5	5.678302597	0.994428028	5.710119222	NA	NA	0	NA	NA	0	4	NA	1	1	4.15E-59	1	3.73E-37	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	53046995	C	A	-	-	-	-	-	-	42	0	0	54	14	25.9	32	4	12.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	3.588049503	2	2	2	1	1	0.411950497	NA	2	NA	2	NA	0.588049503	1.551932136	1.551932136	1	1.294997416	1.294997416	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.64E-20	1	0.0000201	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	108241869	C	T	FER	CCDS4098.1	r.?	-	-	intronic	52	0	0	36	15	41.7	29	13	44.8	0	0	NA	0	0	NA	2	0	0	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.664670659	0.832335329	2	3.929824561	1.964912281	2	NA	NA	1	0	0	1	4	NA	1	1	1.54E-25	1	7.69E-23	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	53100355	C	T	-	-	-	-	-	-	51	0	0	34	9	26.5	36	7	19.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.587884232	1.587884232	1	2.089754386	1.044877193	2	NA	NA	1	NA	NA	1	4	NA	1	1	9.15E-14	1	5.74E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	53100615	T	A	KRT77	CCDS8837.1	r.?	-	-	upstream	41	0	0	44	4	9.1	27	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.454273453	0.454273453	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.0000723	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	53152032	G	C	-	-	-	-	-	-	47	0	0	84	6	7.1	44	4	9.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	10.19154907	8.289880778	8	6	2	2	0.808450931	0.710119222	8	6	3	3	0.191549069	0.289880778	0.865033118	0.865033118	1	1.370624765	1.370624765	1	NA	NA	1	NA	NA	0	4	NA	1	1	0.00000455	1	0.0000723	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	53212127	T	A	HNRNPA1L2	CCDS31980.1	r.?	-	-	intronic	49	0	0	40	5	12.5	29	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.749001996	0.749001996	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.00000178	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	53233634	G	A	-	-	-	-	-	-	49	0	0	65	7	10.8	41	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	0.863137725	0.863137725	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	4.22E-08	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	53288126	T	C	CHD9	CCDS45485.1	r.?	-	-	intronic	50	0	0	41	10	24.4	47	6	12.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	5.626372055	2	3	2	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	1.462051896	1.462051896	1	1.586982641	1.586982641	1	NA	NA	0	NA	NA	1	4	NA	1	1	9.51E-15	1	0.000000141	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	53358367	C	G	-	-	-	-	-	-	40	0	0	36	5	13.9	33	1	3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3.293619843	2	2	1	1	1	0.706380157	NA	3	NA	1	NA	0.293619843	0.69389022	0.69389022	1	0.30196649	0.30196649	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.00000104	1	0.15245715	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	53417502	C	T	-	-	-	-	-	-	45	0	0	44	5	11.4	28	3	10.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	5	3	3	3	2	1	1	NA	NA	NA	NA	NA	NA	0.91108982	0.91108982	1	1.259596491	1.259596491	1	NA	NA	1	NA	NA	0	4	NA	1	1	0.00000288	1	0.000372895	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	36209736	G	A	EEPD1	CCDS34619.1	r.?	-	-	intronic	25	0	0	60	34	56.7	37	12	32.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7.252817795	8.289880778	5	6	2	2	0.747182205	0.710119222	5	6	3	3	0.252817795	0.289880778	5.241820744	1.048364149	5	4.880026635	0.976005327	5	NA	NA	0	NA	NA	1	4	NA	1	1	3.58E-62	1	4.03E-19	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	53428849	C	T	-	-	-	-	-	-	54	0	0	64	21	32.8	47	9	19.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	2.621381238	0.873793746	3	2.439438596	0.813146199	3	NA	NA	1	NA	NA	1	4	NA	1	1	1.60E-32	1	2.24E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	53536919	C	T	PODN	CCDS573.1	r.?	-	-	intronic	12	0	0	49	17	34.7	24	7	29.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.732229541	0.86611477	2	3.437403509	1.14580117	3	NA	NA	0	NA	NA	1	4	NA	1	1	4.26E-27	1	2.51E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	38106093	A	G	-	-	-	-	-	-	37	0	0	61	21	34.4	43	8	18.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	10.19154907	8.289880778	8	6	2	2	0.808450931	0.710119222	8	6	3	3	0.191549069	0.289880778	4.191146373	1.047786593	4	2.801496772	1.03371717	2.710119222	NA	NA	1	NA	NA	0	4	NA	1	1	4.80E-33	1	4.85E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	53593019	C	T	-	-	-	-	-	-	43	0	0	48	5	10.4	28	5	17.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3.293619843	2	2	1	1	1	0.706380157	NA	3	NA	1	NA	0.293619843	0.519169661	0.519169661	1	1.80173339	1.80173339	1	NA	NA	1	NA	NA	0	4	NA	1	1	0.00000447	1	0.000000279	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	53596053	G	A	HUWE1	CCDS35301.1	r.?	-	-	intronic	31	0	0	55	12	21.8	29	1	3.4	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	6.720534823	4.32434803	5	2	1	2	0.279465177	0.67565197	5	3	2	2	0.720534823	0.32434803	1.899336072	0.949668036	2	0.377273447	NA	0	NA	NA	0	NA	NA	0	NA	NA	1	1	8.78E-17	1	0.135292269	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	53597700	G	A	-	-	-	-	-	-	44	0	0	61	12	19.7	41	5	12.2	0	0	NA	1	0	0	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	1.574427146	1.574427146	1	1.558175439	1.558175439	1	0	0	1	NA	NA	1	4	NA	1	1	3.39E-16	1	0.00000202	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	53614130	T	G	OLFM4	CCDS9440.1	r.?	-	-	intronic	63	0	0	55	5	9.1	33	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.545273453	0.545273453	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.00000883	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	53668906	C	T	HUWE1	CCDS35301.1	r.?	-	-	intronic	59	0	0	49	31	63.3	40	9	22.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6.720534823	4.32434803	5	2	1	2	0.279465177	0.67565197	5	3	2	2	0.720534823	0.32434803	5.515044651	1.10300893	5	2.496662517	1.074134547	2.32434803	NA	NA	0	NA	NA	0	4	NA	1	1	4.93E-59	1	4.64E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	53707181	G	T	-	-	-	-	-	-	51	0	0	48	8	16.7	35	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.000666667	1.000666667	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	1.23E-10	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	53731235	C	A	-	-	-	-	-	-	66	0	0	51	16	31.4	36	4	11.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	5	3	3	3	2	1	1	NA	NA	NA	NA	NA	NA	2.509493014	0.836497671	3	1.306684211	1.306684211	1	NA	NA	1	NA	NA	0	4	NA	1	1	9.28E-25	1	0.0000324	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	40231044	A	C	C7orf10	ENST00000309930	r.?	-	-	intronic	34	0	0	89	5	5.6	48	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	10.19154907	8.289880778	8	6	2	2	0.808450931	0.710119222	8	6	3	3	0.191549069	0.289880778	0.682279642	0.682279642	1	0	NA	0	NA	NA	0	NA	NA	0	NA	NA	1	1	0.0000915	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	46395162	G	C	-	-	-	-	-	-	51	0	0	80	6	7.5	49	1	2	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	10.19154907	8.289880778	8	6	2	2	0.808450931	0.710119222	8	6	3	3	0.191549069	0.289880778	0.913767378	0.913767378	1	0.301236212	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	0.00000342	1	0.217776325	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	53761874	G	A	VN1R2	CCDS12862.1	r.330g>a	c.246G>A	p.E82E	silent	47	0	0	67	14	20.9	48	7	14.6	60	0	0	49	2	4.1	41	7	17.1	1.67E-07	TRUE	TRUE	6	8	4	5	2	3	1	1	NA	NA	NA	NA	NA	NA	1.670331337	0.835165669	2	2.156701754	1.078350877	2	0.327672655	0.327672655	1	2.526	0.842	3	4	3	1	1	4.66E-19	0.025168485	4.81E-09	1.51E-09	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	19	53762015	G	T	VN1R2	CCDS12862.1	r.471g>u	c.387G>T	p.R129S	missense	46	0	0	63	17	27	60	5	8.3	255	1	0.4	220	32	14.5	235	25	10.6	4.28E-18	TRUE	TRUE	6	8	4	5	2	3	1	1	NA	NA	NA	NA	NA	NA	2.157844311	1.078922156	2	1.226070175	1.226070175	1	1.158842315	1.158842315	1	1.565824561	0.782912281	2	4	3	1	0.721461271	6.22E-25	3.01E-36	0.0000136	3.52E-25	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	19	53762110	G	T	VN1R2	CCDS12862.1	r.566g>u	c.482G>T	p.G161V	missense	46	0	0	46	12	26.1	39	2	5.1	295	0	0	238	42	17.6	269	22	8.2	9.82E-14	TRUE	TRUE	6	8	4	5	2	3	1	1	NA	NA	NA	NA	NA	NA	2.085916168	1.042958084	2	0.753368421	0.753368421	1	1.40659481	0.703297405	2	1.211298246	1.211298246	1	4	3	1	1	8.12E-18	8.66E-51	0.016387522	7.66E-20	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	7	49515022	G	A	-	-	-	-	-	-	44	0	0	103	22	21.4	41	8	19.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	10.19154907	8.289880778	8	6	2	2	0.808450931	0.710119222	8	6	3	3	0.191549069	0.289880778	2.607282918	0.928370473	2.808450931	2.937053067	0.979017689	3	NA	NA	1	NA	NA	0	4	NA	1	1	2.46E-29	1	3.22E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	53762192	G	A	VN1R2	CCDS12862.1	r.648g>a	c.564G>A	p.V188V	silent	54	0	0	65	17	26.2	34	4	11.8	303	0	0	224	36	16.1	236	15	6.4	2.40E-08	TRUE	TRUE	6	8	4	5	2	3	1	1	NA	NA	NA	NA	NA	NA	2.093908184	1.046954092	2	1.743087719	1.743087719	1	1.286714571	1.286714571	1	0.945403509	0.945403509	1	4	3	1	1	1.14E-24	3.25E-42	0.0000257	2.06E-12	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	7	49575606	T	C	-	-	-	-	-	-	51	0	0	101	9	8.9	44	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	10.19154907	8.289880778	8	6	2	2	0.808450931	0.710119222	8	6	3	3	0.191549069	0.289880778	1.084337288	1.084337288	1	0	NA	0	NA	NA	0	NA	NA	0	NA	NA	1	1	2.70E-09	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	53771042	C	T	-	-	-	-	-	-	41	0	0	38	12	31.6	28	4	14.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.893477046	0.946738523	2	1.540385965	1.540385965	1	NA	NA	1	NA	NA	1	4	NA	1	1	5.86E-19	1	0.0000116	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	53795907	G	A	-	-	-	-	-	-	42	0	0	56	8	14.3	39	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	6	5	3	3	3	2	1	1	NA	NA	NA	NA	NA	NA	1.142858283	1.142858283	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	4.48E-10	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	53866543	G	T	FTO	CCDS32448.1	r.?	-	-	intronic	47	0	0	36	5	13.9	37	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	5.626372055	2	3	2	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	0.83289022	0.83289022	1	0	0	1	NA	NA	0	NA	NA	0	3	NA	1	1	0.00000104	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	53887441	T	C	SCFD2	CCDS33984.1	r.?	-	-	intronic	50	0	0	42	16	38.1	31	10	32.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.901958084	0.950979042	2	3.156333333	1.578166667	2	NA	NA	1	NA	NA	1	4	NA	1	1	2.25E-26	1	3.94E-16	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	53911396	T	C	-	-	-	-	-	-	46	0	0	45	5	11.1	44	6	13.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.665113772	0.665113772	1	1.464982456	1.464982456	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.00000323	1	9.37E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	17	53926658	G	A	-	-	-	-	-	-	46	0	0	39	10	25.6	43	3	7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.021956088	1.021956088	1	0.614035088	0.614035088	1	NA	NA	1	NA	NA	1	4	NA	1	1	5.44E-15	1	0.001328364	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	50246677	C	A	-	-	-	-	-	-	22	0	0	85	9	10.6	28	6	21.4	2	0	0	0	0	NA	0	0	NA	1	TRUE	FALSE	10.19154907	8.289880778	8	6	2	2	0.808450931	0.710119222	8	6	3	3	0.191549069	0.289880778	1.291457894	1.291457894	1	3.223227469	1.074409156	3	NA	NA	1	NA	NA	0	4	NA	1	1	5.71E-10	1	5.36E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	53978221	C	G	-	-	-	-	-	-	58	0	0	50	18	36	41	6	14.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.157125749	1.078562874	2	1.572701754	1.572701754	1	NA	NA	1	NA	NA	1	4	NA	1	1	5.92E-29	1	6.05E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	54006062	T	G	-	-	-	-	-	-	50	0	0	53	17	32.1	35	8	22.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.923437126	0.961718563	2	2.46677193	1.233385965	2	NA	NA	1	NA	NA	1	4	NA	1	1	2.08E-26	1	8.15E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	50963549	G	T	-	-	-	-	-	-	44	0	0	108	9	8.3	45	1	2.2	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	10.19154907	8.289880778	8	6	2	2	0.808450931	0.710119222	8	6	3	3	0.191549069	0.289880778	1.011235898	1.011235898	1	0.331359833	NA	0	NA	NA	0	NA	NA	0	NA	NA	1	1	4.89E-09	1	0.201934322	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	54040156	C	G	-	-	-	-	-	-	27	0	0	22	8	36.4	22	3	13.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.453093812	1.453093812	1	1.192982456	1.192982456	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.17E-13	1	0.000179267	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	54061596	G	A	ZNF331	CCDS33102.1	r.?	-	-	intronic	35	0	0	55	30	54.5	26	9	34.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	8	4	5	2	3	1	1	NA	NA	NA	NA	NA	NA	4.355648703	1.088912176	4	5.111087719	1.022217544	5	NA	NA	0	NA	NA	1	4	NA	1	1	2.55E-54	1	5.65E-15	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	52395977	G	A	-	-	-	-	-	-	35	0	0	102	13	12.7	43	5	11.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	10.19154907	8.289880778	8	6	2	2	0.808450931	0.710119222	8	6	3	3	0.191549069	0.289880778	1.54731276	1.54731276	1	1.74717003	1.74717003	1	NA	NA	1	NA	NA	0	4	NA	1	1	7.55E-15	1	0.00000257	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	54162302	T	A	-	-	-	-	-	-	50	0	0	48	14	29.2	39	8	20.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.297222263	4	2	2	2	2	0.702777737	1	3	NA	2	NA	0.297222263	NA	1.836457563	0.918228782	2	2.208245614	1.104122807	2	NA	NA	0	NA	NA	0	4	NA	1	1	2.51E-21	1	2.09E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	54163119	C	G	FAM120C	CCDS14356.1	r.?	-	-	intronic	45	0	0	56	10	17.9	26	2	7.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6.720534823	4.32434803	5	2	1	2	0.279465177	0.67565197	5	3	2	2	0.720534823	0.32434803	1.559546592	1.559546592	1	0.854413395	0.854413395	1	NA	NA	0	NA	NA	0	4	NA	1	1	2.82E-13	1	0.007502227	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	54172013	C	A	-	-	-	-	-	-	44	0	0	44	13	29.5	34	5	14.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.767644711	0.883822355	2	1.583473684	1.583473684	1	NA	NA	1	NA	NA	1	4	NA	1	1	5.49E-20	1	0.000000771	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	54172014	A	G	-	-	-	-	-	-	44	0	0	44	13	29.5	34	5	14.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.767644711	0.883822355	2	1.583473684	1.583473684	1	NA	NA	1	NA	NA	1	4	NA	1	1	5.49E-20	1	0.000000771	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	17	54179443	C	T	-	-	-	-	-	-	57	0	0	24	9	37.5	19	6	31.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.497005988	1.497005988	1	2.771929825	1.385964912	2	NA	NA	1	NA	NA	1	4	NA	1	1	2.39E-15	1	4.01E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	54209502	A	T	-	-	-	-	-	-	60	0	0	33	4	12.1	28	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.483033932	0.483033932	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.0000228	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	54236128	C	A	-	-	-	-	-	-	34	0	0	44	8	18.2	31	3	9.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.090546906	1.090546906	1	1.044877193	1.044877193	1	NA	NA	1	NA	NA	1	4	NA	1	1	5.90E-11	1	0.000505952	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	54237300	C	A	-	-	-	-	-	-	38	0	0	49	9	18.4	40	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.102530938	1.102530938	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	3.35E-12	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	52746975	C	A	-	-	-	-	-	-	62	0	0	109	12	11	51	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	10.19154907	8.289880778	8	6	2	2	0.808450931	0.710119222	8	6	3	3	0.191549069	0.289880778	1.340192154	1.340192154	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	4.89E-13	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	54280702	C	T	-	-	-	-	-	-	56	0	0	66	12	18.2	32	5	15.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7	6	5	4	2	2	1	1	NA	NA	NA	NA	NA	NA	1.636546906	1.636546906	1	1.992421053	1.992421053	1	NA	NA	1	NA	NA	0	4	NA	1	1	9.36E-16	1	0.000000562	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	54287744	C	T	MIR373	ENST00000362273	r.?	-	-	upstream	13	0	0	47	24	51.1	23	6	26.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	8	4	5	2	3	1	1	NA	NA	NA	NA	NA	NA	4.08392016	1.02098004	4	3.855473684	0.963868421	4	NA	NA	0	NA	NA	1	4	NA	1	1	8.60E-43	1	1.47E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	52753253	G	T	-	-	-	-	-	-	48	0	0	87	5	5.7	29	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	10.19154907	8.289880778	8	6	2	2	0.808450931	0.710119222	8	6	3	3	0.191549069	0.289880778	0.694463207	0.694463207	1	0	NA	0	NA	NA	0	NA	NA	0	NA	NA	1	1	0.0000821	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	54328774	A	T	CACNA2D3	ENST00000474759	r.?	-	-	intronic	36	0	0	35	4	11.4	35	6	17.1	259	0	0	203	67	33	239	24	10	7.43E-17	TRUE	TRUE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	0.60946096	0.60946096	1	2.013	2.013	1	1.764229095	1.07191461	1.645867197	1.177192982	1.177192982	1	4	3	1	1	0.0000289	1.69E-100	2.24E-08	1.25E-23	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	19	54332005	C	T	NLRP12	CCDS12864.1	r.?	-	-	upstream	37	0	0	61	15	24.6	43	9	20.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	8	4	5	2	3	1	1	NA	NA	NA	NA	NA	NA	1.966035928	0.983017964	2	3.087333333	1.029111111	3	NA	NA	0	NA	NA	1	4	NA	1	1	1.73E-21	1	9.45E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	54332576	G	A	-	-	-	-	-	-	59	0	0	53	23	43.4	48	9	18.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.297222263	4	2	2	2	2	0.702777737	1	3	NA	2	NA	0.297222263	NA	2.729529392	1.188186897	2.297222263	2.025122807	1.012561404	2	NA	NA	0	NA	NA	0	4	NA	1	1	6.43E-39	1	2.75E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	54362104	A	G	-	-	-	-	-	-	63	0	0	56	10	17.9	49	8	16.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7	6	5	4	2	2	1	1	NA	NA	NA	NA	NA	NA	1.609570858	1.609570858	1	2.081824561	1.040912281	2	NA	NA	1	NA	NA	0	4	NA	1	1	2.82E-13	1	1.47E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	54370219	A	G	-	-	-	-	-	-	38	0	0	89	12	13.5	40	4	10	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7	6	5	4	2	2	1	1	NA	NA	NA	NA	NA	NA	1.213922156	1.213922156	1	1.277192982	1.277192982	1	NA	NA	1	NA	NA	0	4	NA	1	1	4.06E-14	1	0.0000495	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	54394833	G	A	GZMA	CCDS3965.1	r.?	-	-	upstream	52	0	0	49	11	22.4	30	2	6.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.342211577	1.342211577	1	0.721719298	0.721719298	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.19E-15	1	0.009909649	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	54395886	C	A	-	-	-	-	-	-	25	0	0	41	10	24.4	38	7	18.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.218051896	1.218051896	1	1.728297472	1.728297472	1	NA	NA	1	NA	NA	0	4	NA	1	1	9.51E-15	1	8.61E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	54398995	G	C	UNC13C	CCDS45264.1	r.?	-	-	intronic	50	0	0	42	19	45.2	29	9	31	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3.293619843	2	2	1	1	1	0.706380157	NA	3	NA	1	NA	0.293619843	2.256391218	1.128195609	2	3.120320397	1.360434863	2.293619843	NA	NA	0	NA	NA	0	4	NA	1	1	7.64E-33	1	1.79E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	54409215	C	G	HOXC8	CCDS8870.1	r.?	-	-	downstream	35	0	0	58	15	25.9	34	8	23.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.292932136	1.292932136	1	2.296403509	1.148201754	2	NA	NA	1	NA	NA	1	4	NA	1	1	7.42E-22	1	6.32E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	54425276	C	A	-	-	-	-	-	-	51	0	0	60	9	15	36	3	8.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.898802395	0.898802395	1	0.894070175	0.894070175	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.29E-11	1	0.000788827	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	54442137	C	A	-	-	-	-	-	-	43	0	0	84	12	14.3	53	3	5.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7	6	5	4	2	2	1	1	NA	NA	NA	NA	NA	NA	1.285858283	1.285858283	1	0.728	0.728	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.98E-14	1	0.002429596	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	54448250	G	A	CACNG7	CCDS12868.1	r.?	-	-	downstream	37	0	0	48	9	18.8	35	2	5.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	8	4	5	2	3	1	1	NA	NA	NA	NA	NA	NA	1.502499002	1.502499002	1	0.842	0.842	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.75E-12	1	0.013332991	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	54449586	C	T	ENSG00000227093	ENST00000449142	r.?	-	-	intronic	28	0	0	54	6	11.1	31	3	9.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	5.626372055	2	3	2	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	0.665113772	0.665113772	1	1.202635282	1.202635282	1	NA	NA	0	NA	NA	0	4	NA	1	1	0.000000329	1	0.000505952	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	54454862	T	C	-	-	-	-	-	-	50	0	0	90	32	35.6	50	3	6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7	6	5	4	2	2	1	1	NA	NA	NA	NA	NA	NA	3.201157685	1.067052562	3	0.766315789	0.766315789	1	NA	NA	1	NA	NA	0	4	NA	1	1	4.22E-50	1	0.002055544	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	55254025	G	A	EGFR	CCDS5514.1	r.?	-	-	intronic	18	0	0	88	8	9.1	43	3	7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7	6	5	4	2	2	1	1	NA	NA	NA	NA	NA	NA	0.818273453	0.818273453	1	0.894035088	0.894035088	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.76E-08	1	0.001328364	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	54506787	C	A	ACYP2	CCDS1850.1	r.?	-	-	intronic	46	0	0	59	12	20.3	21	1	4.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	1.622379242	1.622379242	1	0.613052632	0.613052632	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.20E-16	1	0.099912572	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	54537683	T	A	UNC13C	CCDS45264.1	r.?	-	-	intronic	51	0	0	39	6	15.4	32	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3.293619843	2	2	1	1	1	0.706380157	NA	3	NA	1	NA	0.293619843	0.768770459	0.768770459	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	4.43E-08	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	57283952	C	T	-	-	-	-	-	-	26	0	0	50	5	10	33	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	7	6	5	4	2	2	1	1	NA	NA	NA	NA	NA	NA	0.899201597	0.899201597	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	0.00000549	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	54551658	G	A	AC110792.1	ENST00000511394	r.?	-	-	intronic	57	0	0	37	8	21.6	44	5	11.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.078275449	1.078275449	1	1.114	1.114	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.33E-11	1	0.00000288	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	54570290	C	G	C1orf83	CCDS587.1	r.?	-	-	downstream	35	0	0	30	5	16.7	22	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	0.833666667	0.833666667	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	0.000000401	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	54622143	C	G	-	-	-	-	-	-	56	0	0	42	10	23.8	25	3	12	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	3.588049503	2	2	2	1	1	0.411950497	NA	2	NA	2	NA	0.588049503	1.4260998	1.4260998	1	1.243197519	1.243197519	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.24E-14	1	0.00026475	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	54694593	C	T	WDR7	CCDS11962.1	r.4839c>u	c.?	p.?	3'UTR variant	18	0	0	35	10	28.6	17	3	17.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.141716567	1.141716567	1	1.543859649	1.543859649	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.60E-15	1	0.0000807	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	54696159	G	T	-	-	-	-	-	-	48	0	0	36	9	25	41	5	12.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.498003992	1.498003992	1	1.314175439	1.314175439	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.63E-13	1	0.00000202	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	54740482	G	A	-	-	-	-	-	-	50	0	0	48	18	37.5	33	7	21.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.247005988	1.123502994	2	2.283649123	1.141824561	2	NA	NA	1	NA	NA	1	4	NA	1	1	2.42E-29	1	2.98E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	54785152	C	A	SPTBN1	CCDS33199.1	r.?	-	-	upstream	23	0	0	42	4	9.5	7	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	0.759241517	0.759241517	1	0	0	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.0000601	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	54817364	G	A	-	-	-	-	-	-	41	0	0	41	13	31.7	36	3	8.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.265469062	1.265469062	1	0.728070175	0.728070175	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.89E-20	1	0.000788827	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	54886365	G	A	UNC13C	CCDS45264.1	r.?	-	-	intronic	40	0	0	28	8	28.6	32	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3.293619843	2	2	1	1	1	0.706380157	NA	3	NA	1	NA	0.293619843	1.427716567	1.427716567	1	0	0	1	NA	NA	1	NA	NA	0	3	NA	1	1	1.11E-12	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	54920958	T	C	NCKAP1L	CCDS31813.1	r.?	-	-	intronic	54	0	0	49	23	46.9	29	8	27.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	2.341255489	1.170627745	2	2.697052632	1.348526316	2	NA	NA	1	NA	NA	1	4	NA	1	1	6.14E-40	1	1.53E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	54996244	A	G	-	-	-	-	-	-	41	0	0	42	17	40.5	28	3	10.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	3.588049503	2	2	2	1	1	0.411950497	NA	2	NA	2	NA	0.588049503	2.426766467	1.213383234	2	1.108517788	1.108517788	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.73E-28	1	0.000372895	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	55092258	T	C	CACNA2D3	ENST00000474759	r.?	-	-	intronic	54	0	0	39	14	35.9	39	6	15.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	1.919267409	0.959633704	2	1.812877193	1.812877193	1	NA	NA	0	NA	NA	1	4	NA	1	1	8.19E-23	1	4.43E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	55107279	G	A	EGFR	CCDS5514.1	r.?	-	-	intronic	44	0	0	71	12	16.9	38	5	13.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7	6	5	4	2	2	1	1	NA	NA	NA	NA	NA	NA	1.519650699	1.519650699	1	1.685894737	1.685894737	1	NA	NA	1	NA	NA	0	4	NA	1	1	2.38E-15	1	0.00000137	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	55112999	C	G	C20orf107	CCDS33494.1	r.?	-	-	downstream	35	0	0	41	21	51.2	38	11	28.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	5	3	3	3	2	1	1	NA	NA	NA	NA	NA	NA	4.091912176	1.363970725	3	3.402087719	1.13402924	3	NA	NA	1	NA	NA	0	4	NA	1	1	1.17E-37	1	5.19E-17	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	55126536	C	T	-	-	-	-	-	-	38	0	0	40	10	25	35	6	17.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.498003992	1.498003992	1	1.842	1.842	1	NA	NA	1	NA	NA	1	4	NA	1	1	7.22E-15	1	2.24E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	55132235	C	G	PDGFRA	CCDS3495.1	r.?	-	-	intronic	39	0	0	24	6	25	24	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.248003992	1.248003992	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	1.95E-09	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	63894400	T	C	-	-	-	-	-	-	39	0	0	89	55	61.8	39	14	35.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7	6	5	4	2	2	1	1	NA	NA	NA	NA	NA	NA	5.557065868	1.111413174	5	4.585122807	1.146280702	4	NA	NA	1	NA	NA	0	4	NA	1	1	1.03E-102	1	8.19E-23	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	55148899	T	A	-	-	-	-	-	-	59	0	0	36	6	16.7	30	4	13.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3.293619843	2	2	1	1	1	0.706380157	NA	3	NA	1	NA	0.293619843	0.833666667	0.833666667	1	1.338718106	1.338718106	1	NA	NA	0	NA	NA	0	4	NA	1	1	2.68E-08	1	0.0000154	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	55179596	C	G	EGFR	CCDS5514.1	r.?	-	-	intronic	37	0	0	78	5	6.4	31	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	7	6	5	4	2	2	1	1	NA	NA	NA	NA	NA	NA	0.575489022	0.575489022	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	0.0000487	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	64894000	A	G	-	-	-	-	-	-	63	0	0	67	21	31.3	41	7	17.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7	6	5	4	2	2	1	1	NA	NA	NA	NA	NA	NA	2.814500998	0.938166999	3	2.184	1.092	2	NA	NA	1	NA	NA	0	4	NA	1	1	4.96E-32	1	1.51E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	64964907	G	T	-	-	-	-	-	-	93	0	0	97	32	33	55	2	3.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7	6	5	4	2	2	1	1	NA	NA	NA	NA	NA	NA	2.967365269	0.989121756	3	0.459789474	0.459789474	1	NA	NA	1	NA	NA	0	4	NA	1	1	7.52E-49	1	0.031164417	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	69064959	C	T	AUTS2	CCDS5539.1	r.?	-	-	intronic	22	0	0	88	15	17	13	1	7.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7	6	5	4	2	2	1	1	NA	NA	NA	NA	NA	NA	1.528642715	1.528642715	1	0.983438596	0.983438596	1	NA	NA	1	NA	NA	0	4	NA	1	1	6.87E-19	1	0.063085307	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	55269257	C	A	-	-	-	-	-	-	25	0	0	26	17	65.4	17	5	29.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6.720534823	4.32434803	5	2	1	2	0.279465177	0.67565197	5	3	2	2	0.720534823	0.32434803	5.698008217	1.139601643	5	3.262305689	1.403535807	2.32434803	NA	NA	0	NA	NA	0	4	NA	1	1	2.28E-33	1	1.84E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	55271244	C	T	-	-	-	-	-	-	48	0	0	43	14	32.6	34	5	14.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.627397206	0.813698603	2	1.436473684	1.436473684	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.18E-22	1	0.000000771	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	55354828	A	G	-	-	-	-	-	-	25	0	0	26	8	30.8	18	2	11.1	1	0	0	0	0	NA	0	0	NA	1	TRUE	FALSE	6	5	3	3	3	2	1	1	NA	NA	NA	NA	NA	NA	2.461540918	0.820513639	3	1.306684211	1.306684211	1	NA	NA	1	NA	NA	0	4	NA	1	1	5.63E-13	1	0.003626632	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	55461933	T	A	LANCL2	CCDS5517.1	r.?	-	-	intronic	42	0	0	55	23	41.8	44	9	20.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7	6	5	4	2	2	1	1	NA	NA	NA	NA	NA	NA	3.758662675	0.939665669	4	2.618245614	0.872748538	3	NA	NA	1	NA	NA	0	4	NA	1	1	1.91E-38	1	1.18E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	55472984	T	A	BSND	CCDS602.1	r.?	-	-	intronic	24	0	0	28	13	46.4	17	4	23.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	2.316295409	1.158147705	2	2.766403509	0.922134503	3	NA	NA	0	NA	NA	1	4	NA	1	1	4.26E-23	1	0.00000141	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	55484104	T	C	ANKRD55	CCDS34161.1	r.?	-	-	intronic	40	0	0	37	5	13.5	24	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.808922156	0.808922156	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.00000119	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	55489435	C	A	-	-	-	-	-	-	13	0	0	32	9	28.1	26	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.402756487	1.402756487	1	0	0	1	NA	NA	0	NA	NA	1	4	NA	1	1	4.94E-14	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	55491936	C	G	ANKRD55	CCDS34161.1	r.?	-	-	intronic	54	0	0	46	21	45.7	25	3	12	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.738351297	1.369175649	2	1.292631579	1.292631579	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.94E-36	1	0.00026475	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	75818073	G	A	AC006330.1	ENST00000514862	r.?	-	-	intronic	41	0	0	63	16	25.4	29	2	6.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6.377205361	6	3	4	3	2	0.622794639	1	4	NA	3	NA	0.377205361	NA	2.125782218	1.062891109	2	0.881263158	0.881263158	1	NA	NA	0	NA	NA	0	4	NA	1	1	4.48E-23	1	0.009279585	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	55650866	T	C	ERC2	CCDS46851.1	r.?	-	-	intronic	43	0	0	60	19	31.7	37	7	18.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	1.694729161	1.029687671	1.645867197	2.224894737	1.112447368	2	NA	NA	0	NA	NA	1	4	NA	1	1	3.21E-29	1	7.05E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	55666138	A	G	-	-	-	-	-	-	49	0	0	25	5	20	25	2	8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.998403194	0.998403194	1	0.781754386	0.781754386	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.000000153	1	0.006948068	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	119953875	C	T	PRR16	CCDS4127.1	r.?	-	-	intronic	62	0	0	31	19	61.3	23	3	13	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.447105788	1.223552894	2	1.140350877	1.140350877	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.54E-36	1	0.000205387	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	55687507	C	A	-	-	-	-	-	-	82	0	0	56	8	14.3	51	6	11.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.856858283	0.856858283	1	1.271087719	1.271087719	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.48E-10	1	0.000000232	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	55703764	A	T	BMP5	CCDS4958.1	r.?	-	-	intronic	49	0	0	53	4	7.5	26	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	4	3.588049503	2	2	2	1	1	0.411950497	NA	2	NA	2	NA	0.588049503	0.449401198	0.449401198	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	0.000150502	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	55732948	G	T	-	-	-	-	-	-	44	0	0	57	19	33.3	51	10	19.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.995341317	0.997670659	2	2.111298246	1.055649123	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.01E-29	1	1.04E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	55738324	G	T	SLC6A2	CCDS10754.1	r.?	-	-	downstream	40	0	0	44	10	22.7	27	2	7.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	5.626372055	2	3	2	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	1.360187625	1.360187625	1	0.917474339	0.917474339	1	NA	NA	0	NA	NA	0	4	NA	1	1	2.08E-14	1	0.00807567	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	55750267	C	A	SAPS1	CCDS46186.1	r.?	-	-	intronic	17	0	0	48	4	8.3	34	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	8	4	5	2	3	1	1	NA	NA	NA	NA	NA	NA	0.663337325	0.663337325	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	0.000102016	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	55795747	A	T	-	-	-	-	-	-	50	0	0	47	8	17	26	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.018642715	1.018642715	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	1.03E-10	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	55828731	C	T	-	-	-	-	-	-	38	0	0	50	14	28	43	8	18.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.677764471	0.838882236	2	2.003578947	1.001789474	2	NA	NA	1	NA	NA	1	4	NA	1	1	4.84E-21	1	4.85E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	77925132	T	C	MAGI2	CCDS5594.1	r.?	-	-	intronic	43	0	0	64	15	23.4	32	5	15.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	1.870131737	0.935065868	2	1.992421053	1.992421053	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.87E-21	1	0.000000562	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	55892979	C	T	-	-	-	-	-	-	37	0	0	31	9	29	25	4	16	0	0	NA	0	0	NA	1	1	100	0.01	TRUE	FALSE	2.332612953	4.32434803	1	2	1	2	0.667387047	0.67565197	2	3	1	2	0.332612953	0.32434803	1.254142387	1.254142387	1	1.775404457	1.775404457	1	NA	NA	0	11.09627785	11.09627785	1	4	NA	1	1	3.57E-14	1	0.00000727	0.005	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	55904166	C	G	-	-	-	-	-	-	36	0	0	45	19	42.2	33	7	21.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.528630739	1.264315369	2	2.283649123	1.141824561	2	NA	NA	1	NA	NA	1	4	NA	1	1	4.11E-32	1	2.98E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	55904757	C	A	-	-	-	-	-	-	54	0	0	49	11	22.4	37	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	4	3.588049503	2	2	2	1	1	0.411950497	NA	2	NA	2	NA	0.588049503	1.342211577	1.342211577	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	1.19E-15	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	55908493	C	T	Sep-14	CCDS5519.2	r.?	-	-	intronic	32	0	0	61	20	32.8	43	7	16.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7	6	5	4	2	2	1	1	NA	NA	NA	NA	NA	NA	2.949381238	0.983127079	3	2.081824561	1.040912281	2	NA	NA	1	NA	NA	0	4	NA	1	1	4.89E-31	1	2.15E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	78363589	C	T	MAGI2	CCDS5594.1	r.?	-	-	intronic	56	0	0	66	6	9.1	41	2	4.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	0.727273453	0.727273453	1	0.625824561	0.625824561	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.0000011	1	0.018015855	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	55998253	C	A	-	-	-	-	-	-	44	0	0	44	12	27.3	31	4	12.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.362820359	1.362820359	1	1.260578947	1.260578947	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.44E-18	1	0.0000177	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	56010839	G	A	COL21A1	ENST00000244728	r.?	-	-	intronic	41	0	0	54	17	31.5	36	4	11.1	95	0	0	283	107	37.8	304	15	4.9	6.29E-07	TRUE	TRUE	4	3.588049503	2	2	2	1	1	0.411950497	NA	2	NA	2	NA	0.588049503	1.88748503	0.943742515	2	1.149957705	1.149957705	1	2.264982036	1.132491018	2	0.507638987	0.863258934	0.588049503	4	3	1	1	3.02E-26	3.99E-167	0.0000324	7.42E-11	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	5	56042215	C	G	-	-	-	-	-	-	68	0	0	45	16	35.6	40	13	32.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.133157685	1.066578842	2	3.500877193	1.750438596	2	NA	NA	1	NA	NA	1	4	NA	1	1	8.61E-26	1	1.30E-20	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	56054713	A	C	-	-	-	-	-	-	38	0	0	43	12	27.9	36	8	22.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	5	3	3	3	2	1	1	NA	NA	NA	NA	NA	NA	2.229772455	1.114886228	2	2.613368421	0.871122807	3	NA	NA	1	NA	NA	0	4	NA	1	1	3.24E-18	1	1.04E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	56113869	C	T	ZNF524	CCDS12929.1	r.474c>u	c.391C>T	p.R131C	missense	14	0	0	48	7	14.6	12	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	8	4	5	2	3	1	1	NA	NA	NA	NA	NA	NA	1.166834331	1.166834331	1	0	0	1	NA	NA	0	NA	NA	1	4	NA	1	1	4.81E-09	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	56146370	C	T	-	-	-	-	-	-	53	0	0	56	5	8.9	32	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.533289421	0.533289421	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.00000965	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	56268946	A	T	-	-	-	-	-	-	42	0	0	55	12	21.8	35	2	5.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	1.742259481	0.871129741	2	0.728	0.728	1	NA	NA	1	NA	NA	1	4	NA	1	1	8.78E-17	1	0.013332991	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	56326638	G	A	-	-	-	-	-	-	54	0	0	38	7	18.4	37	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	0.918530938	0.918530938	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	8.61E-10	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	56410869	G	T	XKR4	CCDS34893.1	r.?	-	-	intronic	9	0	0	34	13	38.2	19	6	31.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.9069501	0.95347505	2	2.968163049	1.484081525	2	NA	NA	1	NA	NA	0	4	NA	1	1	1.03E-21	1	4.01E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	79135425	G	A	-	-	-	-	-	-	56	0	0	53	10	18.9	30	7	23.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	1.510491018	1.510491018	1	2.975859649	0.991953216	3	NA	NA	1	NA	NA	1	4	NA	1	1	1.57E-13	1	1.44E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	56444331	G	A	-	-	-	-	-	-	32	0	0	34	6	17.6	29	1	3.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.70259481	0.70259481	1	0.298245614	0.298245614	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.86E-08	1	0.135292269	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	56445029	A	T	PCDH15	CCDS44404.1	r.?	-	-	intronic	56	0	0	54	9	16.7	47	2	4.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.297222263	4	2	2	2	2	0.702777737	1	3	NA	2	NA	0.297222263	NA	1.050302785	1.050302785	1	0.463192982	0.463192982	1	NA	NA	0	NA	NA	0	4	NA	1	1	8.48E-12	1	0.02328732	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	56457022	T	C	-	-	-	-	-	-	53	0	0	43	13	30.2	33	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.332612953	4.32434803	1	2	1	2	0.667387047	0.67565197	2	3	1	2	0.332612953	0.32434803	1.306037934	1.306037934	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	3.88E-20	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	56468800	G	T	-	-	-	-	-	-	44	0	0	20	10	50	27	10	37	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.996007984	0.998003992	2	3.245614035	1.622807018	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.72E-18	1	7.62E-17	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	56483778	C	T	PCDH15	CCDS44404.1	r.?	-	-	intronic	61	0	0	49	13	26.5	35	5	14.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.297222263	4	2	2	2	2	0.702777737	1	3	NA	2	NA	0.297222263	NA	1.666648131	0.833324066	2	1.540385965	1.540385965	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.71E-19	1	0.000000895	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	56486556	G	A	-	-	-	-	-	-	37	0	0	55	24	43.6	37	9	24.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	5	3	3	3	2	1	1	NA	NA	NA	NA	NA	NA	3.484518962	1.161506321	3	2.860578947	0.953526316	3	NA	NA	1	NA	NA	0	4	NA	1	1	1.28E-40	1	2.14E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	56512777	C	A	ZC3H10	CCDS8903.1	r.?	-	-	intronic	32	0	0	37	6	16.2	22	1	4.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.808706587	0.808706587	1	0.439736842	0.439736842	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.18E-08	1	0.104413009	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	80768759	A	T	-	-	-	-	-	-	60	0	0	59	12	20.3	50	5	10	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	1.622379242	1.622379242	1	1.277192982	1.277192982	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.20E-16	1	0.00000549	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	56577820	C	G	-	-	-	-	-	-	48	0	0	46	14	30.4	34	7	20.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.821572854	0.910786427	2	2.219017544	1.109508772	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.26E-21	1	3.73E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	82939071	G	T	-	-	-	-	-	-	51	0	0	57	26	45.6	41	8	19.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.732359281	1.366179641	2	2.100526316	1.050263158	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.57E-44	1	3.22E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	56629434	G	T	-	-	-	-	-	-	49	0	0	36	6	16.7	34	4	11.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.833666667	0.833666667	1	1.153087719	1.153087719	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.68E-08	1	0.0000257	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	56650066	C	A	-	-	-	-	-	-	26	0	0	67	8	11.9	28	1	3.6	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	8.614087045	5.626372055	5	3	3	2	0.385912955	0.373627945	6	3	3	3	0.614087045	0.626372055	1.262126259	1.262126259	1	0.446338868	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	1.96E-09	1	0.130947004	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	56674906	T	G	-	-	-	-	-	-	44	0	0	54	9	16.7	40	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	7	6	5	4	2	2	1	1	NA	NA	NA	NA	NA	NA	1.501666667	1.501666667	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	8.48E-12	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	56721259	G	C	TGS1	CCDS34894.1	r.?	-	-	intronic	38	0	0	51	6	11.8	33	3	9.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0.589057884	0.589057884	1	0.854755815	0.854755815	1	NA	NA	1	NA	NA	0	4	NA	1	1	0.000000232	1	0.000609557	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	56726671	C	G	-	-	-	-	-	-	29	0	0	41	18	43.9	23	7	30.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	8	4	5	2	3	1	1	NA	NA	NA	NA	NA	NA	3.50849501	0.877123752	4	4.490666667	0.898133333	5	NA	NA	0	NA	NA	1	4	NA	1	1	6.91E-31	1	1.79E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	56726776	A	G	-	-	-	-	-	-	32	0	0	49	16	32.7	17	2	11.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7	6	5	4	2	2	1	1	NA	NA	NA	NA	NA	NA	2.940389222	0.980129741	3	1.507087719	1.507087719	1	NA	NA	1	NA	NA	0	4	NA	1	1	4.37E-25	1	0.003234386	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	56749836	C	T	MT1A	CCDS32454.1	r.?	-	-	intronic	48	0	0	85	10	11.8	57	1	1.8	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	8.614087045	5.626372055	5	3	3	2	0.385912955	0.373627945	6	3	3	3	0.614087045	0.626372055	1.251520156	1.251520156	1	0.223169434	NA	0	NA	NA	0	NA	NA	0	NA	NA	1	1	2.17E-11	1	0.248523156	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	56779011	G	T	-	-	-	-	-	-	24	0	0	53	7	13.2	23	1	4.3	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	7	6	5	4	2	2	1	1	NA	NA	NA	NA	NA	NA	1.186946108	1.186946108	1	0.549192982	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	9.85E-09	1	0.108890944	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	56817669	G	C	-	-	-	-	-	-	37	0	0	50	14	28	27	2	7.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.332612953	4.32434803	1	2	1	2	0.667387047	0.67565197	2	3	1	2	0.332612953	0.32434803	1.210896098	1.210896098	1	0.821124561	0.821124561	1	NA	NA	0	NA	NA	0	4	NA	1	1	4.84E-21	1	0.00807567	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	17	56829107	C	A	PPM1E	CCDS11613.1	r.?	-	-	upstream	33	0	0	25	15	60	27	4	14.8	0	0	NA	0	0	NA	2	2	100	1.00E-04	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.395209581	1.19760479	2	1.298245614	1.298245614	1	NA	NA	1	8.771929825	4.385964912	2	4	NA	1	1	9.52E-29	1	0.00001	0.000025	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	56846917	C	A	-	-	-	-	-	-	55	0	0	58	15	25.9	42	7	16.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	2.069932136	1.034966068	2	2.132912281	1.06645614	2	NA	NA	1	NA	NA	1	4	NA	1	1	7.42E-22	1	1.81E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	56854865	T	C	ARHGEF3	CCDS46854.1	r.?	-	-	intronic	49	0	0	43	19	44.2	40	8	20	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	2.362997757	1.181498878	2	2.354385965	1.177192982	2	NA	NA	0	NA	NA	1	4	NA	1	1	1.36E-32	1	2.61E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	56884077	A	T	-	-	-	-	-	-	55	0	0	53	7	13.2	37	0	0	1	0	0	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.658946108	0.658946108	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	9.85E-09	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	56900091	G	A	-	-	-	-	-	-	53	0	0	57	17	29.8	43	10	23.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.785620758	0.892810379	2	2.509859649	1.254929825	2	NA	NA	1	NA	NA	1	4	NA	1	1	8.82E-26	1	1.61E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	56940338	C	T	-	-	-	-	-	-	36	0	0	32	8	25	37	7	18.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	3.588049503	2	2	2	1	1	0.411950497	NA	2	NA	2	NA	0.588049503	1.498003992	1.498003992	1	1.958036093	1.958036093	1	NA	NA	1	NA	NA	0	4	NA	1	1	3.69E-12	1	7.05E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	56953118	C	T	ZNF667	CCDS12944.1	r.1408g>a	c.1246G>A	p.E416K	missense	55	0	0	57	22	38.6	33	4	12.1	173	0	0	152	49	32.2	163	14	8.6	1.50E-09	TRUE	TRUE	6.83740247	8	5	5	1	3	0.16259753	1	5	NA	2	NA	0.83740247	NA	3.408155517	1.0776444	3.16259753	1.787403509	1.787403509	1	2.843072737	0.947690912	3	1.270385965	1.270385965	1	4	3	1	1	7.03E-36	2.33E-73	0.0000228	1.84E-13	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	13	56965584	C	A	-	-	-	-	-	-	53	0	0	50	13	26	40	1	2.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.557924152	1.557924152	1	0.269298246	0.269298246	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.65E-19	1	0.181679879	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	57005511	A	G	PCDH15	ENST00000373957	r.?	-	-	intronic	61	0	0	49	16	32.7	26	6	23.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.297222263	4	2	2	2	2	0.702777737	1	3	NA	2	NA	0.297222263	NA	2.056580902	1.028290451	2	2.488315789	1.244157895	2	NA	NA	0	NA	NA	0	4	NA	1	1	4.37E-25	1	3.30E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	57027741	C	T	-	-	-	-	-	-	31	0	0	35	8	22.9	22	1	4.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.143171657	1.143171657	1	0.439736842	0.439736842	1	NA	NA	1	NA	NA	1	4	NA	1	1	8.15E-12	1	0.104413009	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	57046719	A	T	-	-	-	-	-	-	53	0	0	52	5	9.6	36	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	0.767233533	0.767233533	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.00000668	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	57146372	C	T	PCDH15	ENST00000373957	r.?	-	-	intronic	45	0	0	45	5	11.1	33	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.297222263	4	2	2	2	2	0.702777737	1	3	NA	2	NA	0.297222263	NA	0.698105444	0.698105444	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.00000323	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	57175939	T	G	-	-	-	-	-	-	47	0	0	63	5	7.9	39	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	0.631369261	0.631369261	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.0000173	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	57198642	T	C	PCDH15	ENST00000373957	r.?	-	-	intronic	43	0	0	57	16	28.1	30	10	33.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.297222263	4	2	2	2	2	0.702777737	1	3	NA	2	NA	0.297222263	NA	1.767275943	0.883637971	2	3.587052632	1.793526316	2	NA	NA	1	NA	NA	0	4	NA	1	1	7.28E-24	1	2.68E-16	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	57220166	T	A	SDR16C5	CCDS6167.1	r.?	-	-	intronic	38	0	0	34	6	17.6	26	3	11.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0.87859481	0.87859481	1	1.08018592	1.08018592	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.86E-08	1	0.000298167	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	57242746	A	G	PCDH15	ENST00000373957	r.?	-	-	intronic	47	0	0	53	17	32.1	29	4	13.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.297222263	4	2	2	2	2	0.702777737	1	3	NA	2	NA	0.297222263	NA	2.018845472	1.009422736	2	1.486526316	1.486526316	1	NA	NA	1	NA	NA	0	4	NA	1	1	2.08E-26	1	0.0000134	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	57252300	C	T	AASDH	CCDS3504.1	r.?	-	-	intronic	32	0	0	44	18	40.9	35	12	34.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	2.041734531	1.020867265	2	3.35177193	1.675885965	2	NA	NA	1	NA	NA	1	4	NA	1	1	3.47E-30	1	1.83E-19	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	84846299	C	A	-	-	-	-	-	-	50	0	0	51	9	17.6	34	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.05459481	1.05459481	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	4.92E-12	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	88111506	C	T	-	-	-	-	-	-	53	0	0	52	5	9.6	43	2	4.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.575233533	0.575233533	1	0.506280702	0.506280702	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.00000668	1	0.019709573	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	57315765	C	T	-	-	-	-	-	-	49	0	0	51	18	35.3	41	10	24.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.115181637	1.057590818	2	2.628350877	1.314175439	2	NA	NA	1	NA	NA	1	4	NA	1	1	9.10E-29	1	9.51E-15	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	57337076	T	A	PCDH15	ENST00000373957	r.?	-	-	intronic	68	0	0	62	6	9.7	37	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.297222263	4	2	2	2	2	0.702777737	1	3	NA	2	NA	0.297222263	NA	0.610056108	0.610056108	1	0	0	1	NA	NA	1	NA	NA	0	3	NA	1	1	0.000000756	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	89035085	C	A	-	-	-	-	-	-	49	0	0	39	15	38.5	27	3	11.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.306926148	1.153463074	2	1.195684211	1.195684211	1	NA	NA	1	NA	NA	1	4	NA	1	1	6.85E-25	1	0.000334187	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	57386627	A	T	-	-	-	-	-	-	54	0	0	33	10	30.3	24	4	16.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.209580838	1.209580838	1	1.464912281	1.464912281	1	NA	NA	1	NA	NA	1	4	NA	1	1	8.14E-16	1	0.00000613	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	57442173	A	G	DNAH12	CCDS46857.1	r.?	-	-	intronic	40	0	0	49	6	12.2	34	0	0	115	0	0	245	21	8.6	254	0	0	1	TRUE	TRUE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	0.65223015	0.65223015	1	0	0	1	0.459768794	1.298294849	0.354132803	0	0	1	3	2	1	1	0.000000182	1.97E-19	1	1	YES	1_1	0_0	somatic	custom.pulldown.HiSeq
PD9852b	20	57457527	C	A	GNAS	CCDS46622.1	r.?	-	-	intronic	41	0	0	49	6	12.2	31	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	6	5	3	3	3	2	1	1	NA	NA	NA	NA	NA	NA	0.975025948	0.975025948	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	0.000000182	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	89068281	C	G	-	-	-	-	-	-	40	0	0	53	13	24.5	31	6	19.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.468043912	1.468043912	1	2.089754386	2.089754386	1	NA	NA	1	NA	NA	1	4	NA	1	1	8.53E-19	1	1.03E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	57469621	T	C	ZDHHC5	CCDS7965.1	r.?	-	-	downstream	27	0	0	31	5	16.1	24	3	12.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.803714571	0.803714571	1	1.221491228	1.221491228	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.000000476	1	0.000233853	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	57485957	G	T	-	-	-	-	-	-	10	0	0	67	26	38.8	12	2	16.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7	6	5	4	2	2	1	1	NA	NA	NA	NA	NA	NA	3.488902196	0.872225549	4	2.132912281	2.132912281	1	NA	NA	1	NA	NA	0	4	NA	1	1	3.31E-42	1	0.001595918	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	57486462	G	T	-	-	-	-	-	-	44	0	0	36	5	13.9	30	0	0	2	0	0	0	0	NA	0	0	NA	1	TRUE	FALSE	6.83740247	8	5	5	1	3	0.16259753	1	5	NA	2	NA	0.83740247	NA	1.227289163	1.227289163	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	0.00000104	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	57487397	A	T	-	-	-	-	-	-	34	0	0	48	9	18.8	23	3	13	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6.83740247	8	5	5	1	3	0.16259753	1	5	NA	2	NA	0.83740247	NA	1.659930666	1.659930666	1	1.920350877	1.920350877	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.75E-12	1	0.000205387	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	57500484	A	C	PRIM2	ENST00000425433	r.?	-	-	intronic	141	0	0	167	14	8.4	84	2	2.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	3.588049503	2	2	2	1	1	0.411950497	NA	2	NA	2	NA	0.588049503	0.503329341	0.503329341	1	0.248639504	0.422820702	0.588049503	NA	NA	1	NA	NA	0	4	NA	1	1	2.57E-13	1	0.066590661	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	57530166	T	C	-	-	-	-	-	-	49	0	0	54	17	31.5	28	3	10.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.297222263	4	2	2	2	2	0.702777737	1	3	NA	2	NA	0.297222263	NA	1.981110043	0.990555021	2	1.152596491	1.152596491	1	NA	NA	0	NA	NA	0	4	NA	1	1	3.02E-26	1	0.000372895	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	57535302	C	T	ENSG00000234857	ENST00000445014	r.?	-	-	intronic	50	0	0	53	8	15.1	45	3	6.7	1	0	0	0	0	NA	0	0	NA	1	TRUE	FALSE	6	5	3	3	3	2	1	1	NA	NA	NA	NA	NA	NA	1.206794411	1.206794411	1	0.788719298	0.788719298	1	NA	NA	1	NA	NA	0	4	NA	1	1	2.83E-10	1	0.001516071	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	89971769	C	A	GTPBP10	CCDS5617.1	r.?	-	-	upstream	38	0	0	49	13	26.5	33	2	6.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.587884232	0.793942116	2	0.657087719	0.657087719	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.71E-19	1	0.011909843	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	57576519	G	C	-	-	-	-	-	-	51	0	0	38	9	23.7	31	2	6.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.946107784	0.946107784	1	0.570175439	0.570175439	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.79E-13	1	0.010558179	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	57597595	G	T	-	-	-	-	-	-	29	0	0	24	9	37.5	24	9	37.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.497005988	1.497005988	1	3.289473684	1.644736842	2	NA	NA	1	NA	NA	1	4	NA	1	1	2.39E-15	1	2.39E-15	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	57619790	T	A	-	-	-	-	-	-	55	0	0	46	12	26.1	33	3	9.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.302916168	1.302916168	1	0.854755815	0.854755815	1	NA	NA	1	NA	NA	0	4	NA	1	1	8.12E-18	1	0.000609557	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	57655950	G	C	-	-	-	-	-	-	32	0	0	38	10	26.3	25	3	12	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	2.1019002	1.0509501	2	1.532631579	1.532631579	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.06E-15	1	0.00026475	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	57677679	C	T	-	-	-	-	-	-	61	1	1.6	48	13	27.1	42	12	28.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.623836327	0.811918164	2	3.08077193	1.540385965	2	NA	NA	1	NA	NA	1	4	NA	0.263440347	1	2.00E-19	1	2.35E-18	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	92546973	A	G	-	-	-	-	-	-	41	0	0	44	11	25	26	5	19.2	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	NA	4	NA	2	NA	2	NA	1	NA	NA	NA	NA	NA	NA	NA	NA	1	2.068210526	2.068210526	1	NA	NA	1	NA	NA	1	NA	NA	1	1	3.22E-16	1	0.000000188	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	57740982	T	C	-	-	-	-	-	-	43	0	0	47	5	10.6	39	1	2.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.635153693	0.635153693	1	0.280070175	0.280070175	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.00000402	1	0.177567718	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	57760652	C	T	MUDENG	CCDS9729.1	r.?	-	-	downstream	59	1	1.7	42	17	40.5	29	4	13.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.616766467	0.808383234	2	1.210526316	1.210526316	1	NA	NA	1	NA	NA	1	4	NA	0.256019138	1	1.73E-28	1	0.0000134	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	57762039	A	T	SLMAP	CCDS33774.1	r.?	-	-	intronic	47	0	0	32	5	15.6	40	7	17.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	0.833999208	0.833999208	1	2.060087719	1.03004386	2	NA	NA	0	NA	NA	1	4	NA	1	1	0.000000562	1	1.26E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	57776785	T	C	-	-	-	-	-	-	47	0	0	37	9	24.3	42	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.97005988	0.97005988	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	2.14E-13	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	57801820	A	T	-	-	-	-	-	-	45	1	2.2	49	14	28.6	28	3	10.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.713716567	0.856858283	2	1.152596491	1.152596491	1	NA	NA	1	NA	NA	1	4	NA	0.201934322	1	3.50E-21	1	0.000372895	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	57807929	A	T	-	-	-	-	-	-	48	0	0	50	6	12	46	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.599041916	0.599041916	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.000000206	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	57808153	A	T	OR9Q1	CCDS31543.1	r.?	-	-	intronic	33	0	0	41	20	48.8	18	3	16.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	2.436103792	1.218051896	2	1.631912281	1.631912281	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.32E-35	1	0.0000964	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	17	57827187	T	G	TMEM49	CCDS11619.1	r.?	-	-	intronic	38	0	0	27	14	51.9	29	6	20.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.071856287	1.035928144	2	1.815789474	1.815789474	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.15E-25	1	6.72E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	57855447	G	A	-	-	-	-	-	-	42	0	0	43	13	30.2	34	6	17.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.809588822	0.904794411	2	1.895859649	1.895859649	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.88E-20	1	1.86E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	57859831	T	A	-	-	-	-	-	-	37	0	0	47	6	12.8	39	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	7	6	5	4	2	2	1	1	NA	NA	NA	NA	NA	NA	1.150978044	1.150978044	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	0.000000141	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	97899819	C	T	-	-	-	-	-	-	10	0	0	34	5	14.7	25	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.880826347	0.880826347	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.000000771	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	57869930	A	T	-	-	-	-	-	-	44	0	0	46	13	28.3	37	9	24.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	3.588049503	2	2	2	1	1	0.411950497	NA	2	NA	2	NA	0.588049503	1.695740519	0.847870259	2	2.517474977	1.258737488	2	NA	NA	1	NA	NA	0	4	NA	1	1	1.07E-19	1	2.14E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	57896542	C	T	EDN3	CCDS13479.1	r.?	-	-	intronic	38	0	0	60	23	38.3	34	7	20.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	5	3	3	3	2	1	1	NA	NA	NA	NA	NA	NA	3.060942116	1.020314039	3	2.425017544	0.808339181	3	NA	NA	1	NA	NA	0	4	NA	1	1	2.33E-37	1	3.73E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	57899531	T	A	-	-	-	-	-	-	64	0	0	41	5	12.2	35	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.731025948	0.731025948	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.00000202	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	57904212	C	T	EDN3	CCDS13479.1	r.?	-	-	downstream	46	0	0	48	19	39.6	49	9	18.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	5	3	3	3	2	1	1	NA	NA	NA	NA	NA	NA	3.164838323	1.054946108	3	2.166035088	1.083017544	2	NA	NA	1	NA	NA	0	4	NA	1	1	1.92E-31	1	3.35E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	57911733	A	T	-	-	-	-	-	-	43	0	0	46	10	21.7	41	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.300267465	1.300267465	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	3.38E-14	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	57924399	C	T	RAB3C	CCDS3976.1	r.?	-	-	intronic	47	0	0	48	13	27.1	26	4	15.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.623836327	0.811918164	2	1.658877193	1.658877193	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.00E-19	1	0.00000856	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	57934487	T	C	-	-	-	-	-	-	57	0	0	64	12	18.8	34	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.297222263	4	2	2	2	2	0.702777737	1	3	NA	2	NA	0.297222263	NA	1.182376787	1.182376787	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	6.30E-16	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	99137097	C	T	-	-	-	-	-	-	33	0	0	36	10	27.8	22	3	13.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.665780439	1.665780439	1	1.464982456	1.464982456	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.21E-15	1	0.000179267	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	57951938	C	T	-	-	-	-	-	-	48	0	0	57	8	14	39	4	10.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	1.118882236	1.118882236	1	1.315508772	1.315508772	1	NA	NA	1	NA	NA	1	4	NA	1	1	5.19E-10	1	0.0000447	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	57955644	G	C	IGFBP7	CCDS3512.1	r.?	-	-	intronic	58	0	0	38	7	18.4	37	4	10.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.918530938	0.918530938	1	1.055368421	1.055368421	1	NA	NA	1	NA	NA	1	4	NA	1	1	8.61E-10	1	0.0000362	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	57956212	A	G	-	-	-	-	-	-	38	0	0	70	10	14.3	47	5	10.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	1.142858283	1.142858283	1	1.353824561	1.353824561	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.95E-12	1	0.00000402	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	57958344	A	C	-	-	-	-	-	-	60	0	0	46	19	41.3	39	9	23.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.332612953	4.32434803	1	2	1	2	0.667387047	0.67565197	2	3	1	2	0.332612953	0.32434803	1.786071744	1.340277941	1.332612953	2.563240184	1.102778134	2.32434803	NA	NA	0	NA	NA	0	4	NA	1	1	6.97E-32	1	3.62E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	57988913	C	T	ZNF772	CCDS33133.1	r.26g>a	c.?	p.?	5'UTR variant	30	0	0	61	8	13.1	32	0	0	300	0	0	166	36	21.7	142	1	0.7	0.76000752	TRUE	TRUE	6.83740247	8	5	5	1	3	0.16259753	1	5	NA	2	NA	0.83740247	NA	1.156653815	1.156653815	1	0	0	1	1.915983801	0.957991901	2	0.103403509	0.103403509	1	3	2	1	1	9.09E-10	2.89E-47	1	0.509230612	YES	1_1	0_0	somatic	custom.pulldown.HiSeq
PD9852b	3	57997063	T	C	FLNB	CCDS2885.1	r.?	-	-	intronic	24	0	0	46	9	19.6	30	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	1.047845159	1.047845159	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	1.82E-12	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	58044293	T	A	-	-	-	-	-	-	22	0	0	18	5	27.8	22	3	13.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.387780439	1.387780439	1	1.277437262	1.277437262	1	NA	NA	1	NA	NA	0	4	NA	1	1	2.54E-08	1	0.000179267	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	58050205	G	C	-	-	-	-	-	-	54	0	0	26	10	38.5	38	10	26.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.332612953	4.32434803	1	2	1	2	0.667387047	0.67565197	2	3	1	2	0.332612953	0.32434803	1.664982134	1.664982134	1	2.918321076	1.255543937	2.32434803	NA	NA	0	NA	NA	1	4	NA	1	1	4.82E-17	1	4.06E-15	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	100125619	C	T	-	-	-	-	-	-	22	0	0	44	12	27.3	30	11	36.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.635820359	0.81791018	2	3.953298246	1.976649123	2	NA	NA	1	NA	NA	1	4	NA	1	1	4.44E-18	1	2.44E-18	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	58056430	T	C	-	-	-	-	-	-	45	0	0	55	19	34.5	31	4	12.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.067245509	1.033622754	2	1.389578947	1.389578947	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.51E-30	1	0.0000177	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	58058083	G	T	-	-	-	-	-	-	18	0	0	42	6	14.3	15	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	6	5	3	3	3	2	1	1	NA	NA	NA	NA	NA	NA	1.142858283	1.142858283	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	7.02E-08	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	58059709	A	C	FLNB	CCDS2885.1	r.?	-	-	intronic	41	0	0	47	11	23.4	54	9	16.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	1.250998813	1.250998813	1	1.965912281	0.98295614	2	NA	NA	0	NA	NA	1	4	NA	1	1	7.21E-16	1	8.48E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	58145277	C	G	-	-	-	-	-	-	39	0	0	37	4	10.8	38	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.647137725	0.647137725	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.0000362	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	58202790	C	G	-	-	-	-	-	-	48	0	0	53	7	13.2	37	0	0	0	0	NA	2	0	0	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	1.054946108	1.054946108	1	0	0	1	0	0	1	NA	NA	1	3	NA	1	1	9.85E-09	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	113309579	T	G	-	-	-	-	-	-	44	0	0	59	23	39	40	6	15	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.336886228	1.168443114	2	1.615789474	1.615789474	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.45E-37	1	5.18E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	58311467	A	T	-	-	-	-	-	-	44	0	0	36	5	13.9	26	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.69389022	0.69389022	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.00000104	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	58320208	T	G	-	-	-	-	-	-	45	0	0	43	19	44.2	34	7	20.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.297222263	4	2	2	2	2	0.702777737	1	3	NA	2	NA	0.297222263	NA	2.779843298	1.21008896	2.297222263	2.219017544	1.109508772	2	NA	NA	0	NA	NA	0	4	NA	1	1	1.36E-32	1	3.73E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	58352471	C	T	-	-	-	-	-	-	54	0	0	40	19	47.5	37	6	16.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	3.588049503	2	2	2	1	1	0.411950497	NA	2	NA	2	NA	0.588049503	2.846207585	1.423103792	2	1.678316651	1.678316651	1	NA	NA	1	NA	NA	0	4	NA	1	1	2.27E-33	1	3.18E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	58363980	C	A	-	-	-	-	-	-	47	0	0	60	22	36.7	37	7	18.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.297222263	4	2	2	2	2	0.702777737	1	3	NA	2	NA	0.297222263	NA	2.308150431	1.004757123	2.297222263	2.035894737	1.017947368	2	NA	NA	1	NA	NA	0	4	NA	1	1	2.81E-35	1	7.05E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	58400931	G	A	-	-	-	-	-	-	43	0	0	30	11	36.7	29	8	27.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.83206986	0.91603493	2	2.592446208	1.296223104	2	NA	NA	1	NA	NA	0	4	NA	1	1	2.44E-18	1	1.53E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	58419405	A	C	-	-	-	-	-	-	48	0	0	44	4	9.1	33	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.545273453	0.545273453	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.0000723	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	58442757	A	G	-	-	-	-	-	-	51	0	0	41	10	24.4	31	5	16.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.218051896	1.218051896	1	1.573280702	1.573280702	1	NA	NA	1	NA	NA	1	4	NA	1	1	9.51E-15	1	0.000000476	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	58452088	A	G	-	-	-	-	-	-	45	0	0	51	5	9.8	30	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	4	3.588049503	2	2	2	1	1	0.411950497	NA	2	NA	2	NA	0.588049503	0.587217565	0.587217565	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	0.00000606	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	58474782	C	T	-	-	-	-	-	-	42	0	0	60	8	13.3	37	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.796938124	0.796938124	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	7.93E-10	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	58476269	G	C	-	-	-	-	-	-	63	0	0	46	13	28.3	33	6	18.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	5.626372055	2	3	2	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	1.695740519	0.847870259	2	2.256490942	0.950650647	2.373627945	NA	NA	0	NA	NA	1	4	NA	1	1	1.07E-19	1	1.54E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	58552472	G	A	ZSCAN1	CCDS12969.1	r.?	-	-	intronic	17	0	0	51	26	51	26	10	38.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6.83740247	8	5	5	1	3	0.16259753	1	5	NA	2	NA	0.83740247	NA	4.503003403	1.081777273	4.16259753	5.687192982	1.137438596	5	NA	NA	0	NA	NA	1	4	NA	1	1	3.27E-46	1	4.82E-17	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	114612254	C	G	MDFIC	CCDS34737.1	r.?	-	-	intronic	50	0	0	37	12	32.4	36	1	2.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.941413174	0.970706587	2	0.301614035	0.301614035	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.03E-19	1	0.165106833	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	58591058	A	G	CNOT1	CCDS10799.1	r.?	-	-	intronic	44	0	0	50	25	50	46	8	17.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	5.626372055	2	3	2	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	2.996007984	1.498003992	2	2.157304527	1.078652264	2	NA	NA	0	NA	NA	0	4	NA	1	1	3.34E-44	1	8.61E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	58596984	T	C	CDH26	ENST00000244047	r.?	-	-	intronic	40	0	0	46	10	21.7	32	12	37.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	5	3	3	3	2	1	1	NA	NA	NA	NA	NA	NA	1.734267465	0.867133733	2	4.414473684	1.471491228	3	NA	NA	1	NA	NA	0	4	NA	1	1	3.38E-14	1	5.03E-20	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	131942988	C	T	RAD50	CCDS34233.1	r.?	-	-	intronic	60	0	0	33	16	48.5	21	2	9.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.936127745	0.968063872	2	0.833333333	0.833333333	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.64E-28	1	0.004928472	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	58677611	A	G	-	-	-	-	-	-	29	0	0	49	15	30.6	28	5	17.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	5.626372055	2	3	2	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	1.833556886	0.916778443	2	2.219296037	2.219296037	1	NA	NA	0	NA	NA	0	4	NA	1	1	4.10E-23	1	0.000000279	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	119386641	C	A	-	-	-	-	-	-	58	0	0	51	8	15.7	20	2	10	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.940746507	0.940746507	1	1.077192982	1.077192982	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.05E-10	1	0.004473894	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	58730323	G	A	-	-	-	-	-	-	13	0	0	52	24	46.2	23	4	17.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	2.306311377	1.153155689	2	1.634368261	1.634368261	1	NA	NA	1	NA	NA	0	4	NA	1	1	2.22E-41	1	0.00000513	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	58740408	G	C	-	-	-	-	-	-	51	0	0	33	4	12.1	22	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.483033932	0.483033932	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.0000228	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	58782495	C	A	-	-	-	-	-	-	44	0	0	39	5	12.8	37	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0.638978044	0.638978044	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	0.00000156	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	58790854	C	A	ZNF8	CCDS12974.1	r.?	-	-	intronic	13	0	0	74	10	13.5	24	3	12.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6.83740247	8	5	5	1	3	0.16259753	1	5	NA	2	NA	0.83740247	NA	1.191971489	1.191971489	1	1.846491228	1.846491228	1	NA	NA	0	NA	NA	1	4	NA	1	1	5.24E-12	1	0.000233853	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	153544530	G	T	-	-	-	-	-	-	38	0	0	50	34	68	23	11	47.8	0	0	NA	0	0	NA	2	0	0	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.714570858	1.357285429	2	4.192982456	2.096491228	2	NA	NA	1	0	0	1	4	NA	1	1	2.65E-66	1	6.25E-20	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	58844801	T	A	-	-	-	-	-	-	42	0	0	51	4	7.8	44	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	0.623377246	0.623377246	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.000129466	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	121319992	A	G	-	-	-	-	-	-	58	0	0	33	6	18.2	40	1	2.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.090546906	1.090546906	1	0.269298246	0.269298246	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.54E-08	1	0.181679879	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	58858111	T	C	-	-	-	-	-	-	65	0	0	50	14	28	33	6	18.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.677764471	0.838882236	2	1.960491228	1.960491228	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.84E-21	1	1.54E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	58875661	C	T	-	-	-	-	-	-	38	0	0	37	10	27	26	3	11.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.077844311	1.077844311	1	1.00877193	1.00877193	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.01E-15	1	0.000298167	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	58904729	C	G	FAM110B	CCDS6170.1	r.?	-	-	upstream	48	0	0	39	18	46.2	33	9	27.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	2.306311377	1.153155689	2	2.564267445	1.282133722	2	NA	NA	1	NA	NA	0	4	NA	1	1	2.15E-31	1	6.76E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	58915368	C	T	-	-	-	-	-	-	40	0	0	55	13	23.6	42	2	4.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	5	3	3	3	2	1	1	NA	NA	NA	NA	NA	NA	1.886115768	0.943057884	2	0.565052632	0.565052632	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.46E-18	1	0.018854633	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	58928406	A	G	KIAA0586	CCDS45115.1	r.?	-	-	intronic	42	0	0	31	16	51.6	27	7	25.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.05988024	1.02994012	2	2.271929825	1.135964912	2	NA	NA	1	NA	NA	1	4	NA	1	1	4.27E-29	1	6.36E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	58946466	G	C	-	-	-	-	-	-	33	0	0	46	7	15.2	33	9	27.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	5	3	3	3	2	1	1	NA	NA	NA	NA	NA	NA	1.214786427	1.214786427	1	3.213736842	1.071245614	3	NA	NA	1	NA	NA	0	4	NA	1	1	3.53E-09	1	6.76E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	58951291	A	G	FAM110B	CCDS6170.1	r.?	-	-	intronic	26	0	0	30	5	16.7	33	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0.833666667	0.833666667	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	0.000000401	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	58979856	G	A	MPEG1	CCDS41650.1	r.569c>u	c.483C>T	p.I161I	silent	27	0	0	18	4	22.2	18	5	27.8	185	0	0	202	72	35.6	181	27	14.9	2.43E-23	TRUE	TRUE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.108227545	1.108227545	1	2.716596491	1.358298246	2	1.777157685	0.888578842	2	1.456017544	0.728008772	2	4	3	1	1	0.00000181	9.01E-111	2.54E-08	3.83E-31	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	13	59060759	A	G	-	-	-	-	-	-	43	0	0	40	6	15	29	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.898802395	0.898802395	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	5.18E-08	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	59068662	C	A	AC106793.1	ENST00000500117	r.?	-	-	intronic	47	0	0	52	5	9.6	30	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	5.626372055	2	3	2	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	0.575233533	0.575233533	1	0	0	1	NA	NA	0	NA	NA	0	3	NA	1	1	0.00000668	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	59096637	G	T	-	-	-	-	-	-	54	0	0	46	11	23.9	36	0	0	0	0	NA	1	0	0	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.193091816	1.193091816	1	0	0	1	0	0	1	NA	NA	1	3	NA	1	1	5.55E-16	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	59119335	T	A	AC106793.1	ENST00000500117	r.?	-	-	intronic	44	0	0	59	20	33.9	36	1	2.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	5.626372055	2	3	2	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	2.031293413	1.015646707	2	0.347152453	0.347152453	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.21E-31	1	0.165106833	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	59119562	T	C	AC106793.1	ENST00000500117	r.?	-	-	intronic	54	0	0	40	19	47.5	34	7	20.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	5.626372055	2	3	2	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	2.846207585	1.423103792	2	2.554050187	1.076011172	2.373627945	NA	NA	0	NA	NA	0	4	NA	1	1	2.27E-33	1	3.73E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	59119614	A	G	AC106793.1	ENST00000500117	r.?	-	-	intronic	50	0	0	45	17	37.8	34	5	14.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	5.626372055	2	3	2	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	2.264982036	1.132491018	2	1.822550376	1.822550376	1	NA	NA	0	NA	NA	1	4	NA	1	1	7.37E-28	1	0.000000771	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	59120231	G	C	AC106793.1	ENST00000500117	r.?	-	-	intronic	62	0	0	30	12	40	43	10	23.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	5.626372055	2	3	2	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	2.396806387	1.198403194	2	2.888804338	0.962934779	3	NA	NA	0	NA	NA	1	4	NA	1	1	1.94E-20	1	1.61E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	59120266	C	A	AC106793.1	ENST00000500117	r.?	-	-	intronic	52	0	0	40	11	27.5	42	12	28.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	5.626372055	2	3	2	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	1.647804391	1.647804391	1	3.545914338	1.181971446	3	NA	NA	0	NA	NA	0	4	NA	1	1	9.88E-17	1	2.35E-18	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	59131252	T	A	-	-	-	-	-	-	43	0	0	52	4	7.7	55	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	0.61538523	0.61538523	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.000139698	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	59154256	T	C	FAM63B	CCDS42046.1	r.?	-	-	downstream	33	0	0	51	27	52.9	31	12	38.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5	3.293619843	4	2	1	1	1	0.706380157	NA	3	NA	1	NA	0.293619843	3.698776447	0.924694112	4	3.895367721	1.698349329	2.293619843	NA	NA	1	NA	NA	0	4	NA	1	1	1.52E-48	1	3.16E-20	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	59174161	A	C	-	-	-	-	-	-	46	0	0	58	6	10.3	44	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	5.626372055	2	3	2	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	0.617177645	0.617177645	1	0	0	1	NA	NA	0	NA	NA	0	3	NA	1	1	0.000000506	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	59209944	T	A	-	-	-	-	-	-	54	0	0	45	10	22.2	34	2	5.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.108227545	1.108227545	1	0.57654386	0.57654386	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.66E-14	1	0.012612579	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	59210106	T	G	-	-	-	-	-	-	44	0	0	32	7	21.9	32	6	18.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.093251497	1.093251497	1	1.837122807	1.837122807	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.36E-10	1	1.27E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	59330016	G	C	-	-	-	-	-	-	61	0	0	48	8	16.7	39	1	2.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.000666667	1.000666667	1	0.280070175	0.280070175	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.23E-10	1	0.177567718	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	123745696	C	G	-	-	-	-	-	-	46	0	0	58	11	19	33	1	3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.138483034	1.138483034	1	0.323157895	0.323157895	1	NA	NA	1	NA	NA	1	4	NA	1	1	8.96E-15	1	0.15245715	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	59358709	C	A	-	-	-	-	-	-	41	1	2.4	50	16	32	32	13	40.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	5.626372055	2	3	2	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	1.91744511	0.958722555	2	5.033710563	1.677903521	3	NA	NA	0	NA	NA	0	4	NA	0.18577148	1	6.40E-25	1	3.88E-22	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	59410111	C	T	-	-	-	-	-	-	59	0	0	50	20	40	35	7	20	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.396806387	1.198403194	2	2.154385965	1.077192982	2	NA	NA	1	NA	NA	1	4	NA	1	1	3.90E-33	1	4.65E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	59413981	G	A	-	-	-	-	-	-	52	1	1.9	54	21	38.9	30	7	23.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.297222263	4	2	2	2	2	0.702777737	1	3	NA	2	NA	0.297222263	NA	2.446513672	1.064987795	2.297222263	2.509859649	1.254929825	2	NA	NA	0	NA	NA	0	4	NA	0.229451111	1	2.12E-34	1	1.44E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	59448385	G	T	-	-	-	-	-	-	41	0	0	49	6	12.2	29	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	0.609025948	0.609025948	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	0.000000182	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	59455804	T	G	-	-	-	-	-	-	44	0	0	35	6	17.1	21	3	14.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.682634731	0.682634731	1	1.254385965	1.254385965	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.24E-08	1	0.000155401	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	143149060	C	G	-	-	-	-	-	-	37	0	0	28	14	50	27	10	37	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.996007984	0.998003992	2	3.245614035	1.622807018	2	NA	NA	1	NA	NA	1	4	NA	1	1	2.29E-25	1	7.62E-17	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	59484713	T	C	-	-	-	-	-	-	46	0	0	32	7	21.9	30	2	6.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.297222263	4	2	2	2	2	0.702777737	1	3	NA	2	NA	0.297222263	NA	1.377343173	1.377343173	1	0.721719298	0.721719298	1	NA	NA	1	NA	NA	0	4	NA	1	1	2.36E-10	1	0.009909649	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	59512405	T	A	-	-	-	-	-	-	54	0	0	54	6	11.1	43	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	5.626372055	2	3	2	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	0.665113772	0.665113772	1	0	0	1	NA	NA	0	NA	NA	0	3	NA	1	1	0.000000329	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	147015345	G	A	CNTNAP2	CCDS5889.1	r.?	-	-	intronic	40	0	0	33	20	60.6	21	5	23.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.419161677	1.209580838	2	2.087719298	2.087719298	1	NA	NA	1	NA	NA	1	4	NA	1	1	5.14E-38	1	5.95E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	59530822	A	G	-	-	-	-	-	-	57	0	0	60	16	26.7	37	6	16.2	0	0	NA	2	0	0	0	0	NA	1	TRUE	FALSE	4.297222263	4	2	2	2	2	0.702777737	1	3	NA	2	NA	0.297222263	NA	1.679226608	0.839613304	2	1.745052632	1.745052632	1	0	0	1	NA	NA	1	4	NA	1	1	1.86E-23	1	3.18E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	59571783	G	T	-	-	-	-	-	-	41	0	0	38	8	21.1	40	1	2.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.053315369	1.053315369	1	0.294298246	0.294298246	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.67E-11	1	0.181679879	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	59605206	C	G	-	-	-	-	-	-	23	0	0	42	13	31	25	5	20	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.54752495	1.54752495	1	2.354385965	1.177192982	2	NA	NA	0	NA	NA	1	4	NA	1	1	2.72E-20	1	0.000000153	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	17	59649545	A	G	-	-	-	-	-	-	33	0	0	38	18	47.4	28	5	17.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.892215569	0.946107784	2	1.570175439	1.570175439	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.16E-31	1	0.000000279	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	167070388	G	A	-	-	-	-	-	-	34	0	0	33	14	42.4	46	9	19.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.54061477	1.270307385	2	2.111298246	1.055649123	2	NA	NA	1	NA	NA	1	4	NA	1	1	4.57E-24	1	1.82E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	149169836	G	C	ZNF746	CCDS5897.1	r.?	-	-	downstream	54	0	0	30	5	16.7	22	3	13.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.666666667	0.666666667	1	1.192982456	1.192982456	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.000000401	1	0.000179267	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	59687010	G	C	-	-	-	-	-	-	39	0	0	36	7	19.4	30	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.968451098	0.968451098	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	5.74E-10	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	151364409	T	G	PRKAG2	CCDS43683.1	r.?	-	-	intronic	56	0	0	36	7	19.4	28	2	7.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.774451098	0.774451098	1	0.622807018	0.622807018	1	NA	NA	1	NA	NA	1	4	NA	1	1	5.74E-10	1	0.008668191	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	59733587	C	T	-	-	-	-	-	-	58	0	0	36	10	27.8	35	8	22.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.387780439	1.387780439	1	2.69577193	0.898590643	3	NA	NA	0	NA	NA	1	4	NA	1	1	2.21E-15	1	8.15E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	59789017	A	C	ENSG00000212701	ENST00000391394	r.?	-	-	downstream	64	0	0	44	18	40.9	29	6	20.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7.617024881	5	4	3	3	2	0.382975119	1	5	NA	3	NA	0.617024881	NA	3.930097707	0.982524427	4	2.436789474	0.812263158	3	NA	NA	1	NA	NA	0	4	NA	1	1	3.47E-30	1	6.72E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	59837865	G	T	-	-	-	-	-	-	49	0	0	62	9	14.5	44	5	11.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	1.158842315	1.158842315	1	1.456	1.456	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.12E-11	1	0.00000288	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	59864490	G	A	-	-	-	-	-	-	46	0	0	38	7	18.4	44	3	6.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.918530938	0.918530938	1	0.664491228	0.664491228	1	NA	NA	1	NA	NA	1	4	NA	1	1	8.61E-10	1	0.00142027	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	59873456	T	A	TOX	CCDS34897.1	r.?	-	-	intronic	37	0	0	45	17	37.8	43	11	25.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.886982036	0.943491018	2	2.404587787	1.202293893	2	NA	NA	1	NA	NA	0	4	NA	1	1	7.37E-28	1	2.42E-16	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	59883181	A	C	FHIT	CCDS2894.1	r.?	-	-	intronic	39	0	0	40	12	30	32	2	6.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	1.603844631	1.603844631	1	0.729859649	0.729859649	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.20E-18	1	0.011224977	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	48686992	C	G	-	-	-	-	-	-	60	0	0	34	6	17.6	33	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	4	3.588049503	2	2	2	1	1	0.411950497	NA	2	NA	2	NA	0.588049503	1.05459481	1.05459481	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	1.86E-08	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	59926368	C	A	GPR135	CCDS9738.1	r.?	-	-	downstream	53	0	0	42	23	54.8	35	9	25.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.18762475	1.093812375	2	2.254385965	1.127192982	2	NA	NA	1	NA	NA	1	4	NA	1	1	4.86E-42	1	1.23E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	59942038	C	T	-	-	-	-	-	-	55	0	0	76	22	28.9	51	7	13.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	2.309692615	1.154846307	2	1.749754386	1.749754386	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.34E-32	1	7.46E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	59954605	T	C	DEPDC1B	CCDS3977.1	r.?	-	-	intronic	33	0	0	39	11	28.2	38	5	13.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.689748503	0.844874251	2	1.421894737	1.421894737	1	NA	NA	1	NA	NA	1	4	NA	1	1	7.20E-17	1	0.00000137	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	59987671	A	C	MS4A4E	ENST00000427611	r.?	-	-	intronic	39	0	0	40	8	20	32	2	6.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.998403194	0.998403194	1	0.605859649	0.605859649	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.61E-11	1	0.011224977	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	60016663	G	T	-	-	-	-	-	-	61	0	0	57	6	10.5	38	1	2.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	0.839161677	0.839161677	1	0.332070175	0.332070175	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.000000456	1	0.173434892	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	77805756	T	A	-	-	-	-	-	-	40	0	0	38	17	44.7	30	7	23.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.784431138	0.892215569	2	2.043859649	1.021929825	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.99E-29	1	1.44E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	60106547	C	G	ELOVL7	CCDS47029.1	r.?	-	-	intronic	50	0	0	41	10	24.4	36	9	25	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.462051896	1.462051896	1	2.692982456	1.346491228	2	NA	NA	1	NA	NA	1	4	NA	1	1	9.51E-15	1	1.63E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	60153887	C	A	FHIT	CCDS2894.1	r.?	-	-	intronic	48	0	0	53	14	26.4	26	7	26.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	1.411383276	1.411383276	1	3.166649123	1.055549708	3	NA	NA	0	NA	NA	1	4	NA	1	1	1.22E-20	1	4.73E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	60219741	G	T	-	-	-	-	-	-	53	0	0	62	10	16.1	47	5	10.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0.803714571	0.803714571	1	0.99564963	0.99564963	1	NA	NA	1	NA	NA	0	4	NA	1	1	8.29E-13	1	0.00000402	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	60222468	T	C	FHIT	CCDS2894.1	r.?	-	-	intronic	40	0	0	49	8	16.3	51	0	0	42	0	0	144	28	19.4	129	0	0	1	TRUE	TRUE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	0.87142225	0.87142225	1	0	0	1	1.037152862	1.037152862	1	0	0	1	3	2	1	1	1.47E-10	1.14E-35	1	1	YES	1_1	0_0	somatic	custom.pulldown.HiSeq
PD9852b	12	60224570	T	A	-	-	-	-	-	-	55	0	0	31	13	41.9	36	7	19.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	2.091654691	1.045827345	2	1.895754386	1.895754386	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.32E-22	1	5.74E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	60246504	T	G	-	-	-	-	-	-	50	0	0	36	9	25	36	5	13.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.248003992	1.248003992	1	1.358298246	1.358298246	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.63E-13	1	0.00000104	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	60246505	A	G	-	-	-	-	-	-	51	0	0	36	9	25	37	5	13.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.248003992	1.248003992	1	1.319210526	1.319210526	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.63E-13	1	0.00000119	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	60271178	G	T	-	-	-	-	-	-	31	0	0	57	8	14	39	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0.698882236	0.698882236	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	5.19E-10	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	60271298	G	C	-	-	-	-	-	-	38	0	0	71	7	9.9	48	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0.494209581	0.494209581	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	7.85E-08	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	60295351	T	A	-	-	-	-	-	-	51	0	0	51	6	11.8	30	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.589057884	0.589057884	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.000000232	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	153161975	G	A	-	-	-	-	-	-	47	0	0	42	10	23.8	38	1	2.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.9500998	0.9500998	1	0.228070175	0.228070175	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.24E-14	1	0.173434892	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	60353166	A	C	-	-	-	-	-	-	53	0	0	69	25	36.2	50	11	22	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.80710978	0.90355489	2	2.066442629	1.033221315	2	NA	NA	1	NA	NA	0	4	NA	1	1	1.00E-39	1	1.52E-15	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	60353772	A	G	DIAPH3	CCDS41898.1	r.?	-	-	intronic	21	0	0	44	15	34.1	27	1	3.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.043277445	1.021638723	2	0.398561404	0.398561404	1	NA	NA	1	NA	NA	1	4	NA	1	1	6.12E-24	1	0.126579904	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	60405041	C	T	BICC1	CCDS31206.1	r.?	-	-	intronic	18	0	0	49	16	32.7	30	4	13.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.297222263	4	2	2	2	2	0.702777737	1	3	NA	2	NA	0.297222263	NA	2.056580902	1.028290451	2	1.432666667	1.432666667	1	NA	NA	0	NA	NA	1	4	NA	1	1	4.37E-25	1	0.0000154	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	60504429	G	T	-	-	-	-	-	-	27	0	0	65	14	21.5	52	12	23.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	1.718283433	0.859141717	2	2.950315789	0.983438596	3	NA	NA	1	NA	NA	1	4	NA	1	1	2.93E-19	1	4.19E-17	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	60506048	A	G	-	-	-	-	-	-	47	1	2.1	36	11	30.6	23	2	8.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3.293619843	2	2	1	1	1	0.706380157	NA	3	NA	1	NA	0.293619843	1.527556886	1.527556886	1	0.875702821	0.875702821	1	NA	NA	1	NA	NA	0	4	NA	0.209895027	1	2.62E-17	1	0.00589844	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	60523403	G	T	FHIT	CCDS2894.1	r.?	-	-	intronic	36	0	0	35	4	11.4	20	1	5	0	0	NA	1	0	0	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	0.60946096	0.60946096	1	0.588596491	0.588596491	1	0	NA	0	NA	NA	1	4	NA	1	1	0.0000289	1	0.09538952	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	60593236	G	T	-	-	-	-	-	-	52	0	0	59	6	10.2	35	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	5.626372055	2	3	2	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	0.611185629	0.611185629	1	0	0	1	NA	NA	0	NA	NA	0	3	NA	1	1	0.000000561	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	60629582	C	G	ZSWIM6	CCDS47215.1	r.?	-	-	intronic	20	0	0	40	8	20	10	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.198403194	1.198403194	1	0	0	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.61E-11	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	82527794	G	T	-	-	-	-	-	-	56	0	0	31	22	71	24	5	20.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.834331337	1.417165669	2	1.824561404	1.824561404	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.60E-44	1	0.000000123	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	60657442	A	T	-	-	-	-	-	-	47	0	0	49	20	40.8	39	8	20.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	2.036742515	1.018371257	2	2.003245614	1.001622807	2	NA	NA	1	NA	NA	1	4	NA	1	1	2.35E-33	1	2.09E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	60686489	C	A	-	-	-	-	-	-	49	0	0	40	7	17.5	21	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.873602794	0.873602794	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	1.26E-09	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	60691236	C	G	-	-	-	-	-	-	58	0	0	50	8	16	33	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	5.626372055	2	3	2	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	0.958722555	0.958722555	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	1.74E-10	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	60713180	G	T	-	-	-	-	-	-	47	0	0	41	19	46.3	25	5	20	80	0	0	285	120	42.1	333	94	28.2	5.21E-105	TRUE	TRUE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	2.311303393	1.155651697	2	1.878584208	1.878584208	1	2.101638723	1.050819361	2	2.648803734	1.324401867	2	4	3	1	1	4.20E-33	2.78E-194	0.000000153	8.65E-133	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	7	153184706	G	T	-	-	-	-	-	-	61	0	0	35	18	51.4	45	6	13.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.051896208	1.025948104	2	1.166666667	1.166666667	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.60E-32	1	0.000000108	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	60738025	C	A	PPM1A	CCDS9744.1	r.?	-	-	intronic	58	0	0	35	15	42.9	18	3	16.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.71257485	0.856287425	2	1.464912281	1.464912281	1	NA	NA	1	NA	NA	1	4	NA	1	1	9.02E-26	1	0.0000964	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	60748679	T	C	-	-	-	-	-	-	45	0	0	38	18	47.4	26	7	26.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.892215569	0.946107784	2	2.359649123	1.179824561	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.16E-31	1	4.73E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	60825200	C	T	-	-	-	-	-	-	16	0	0	28	4	14.3	21	1	4.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.713858283	0.713858283	1	0.469052632	0.469052632	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.0000116	1	0.099912572	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	158294557	C	A	PTPRN2	CCDS5949.1	r.?	-	-	intronic	17	0	0	32	5	15.6	30	7	23.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.622754491	0.622754491	1	2.043859649	1.021929825	2	NA	NA	1	NA	NA	1	4	NA	1	1	0.000000562	1	1.44E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	60859494	G	A	-	-	-	-	-	-	44	0	0	52	22	42.3	34	8	23.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.297222263	4	2	2	2	2	0.702777737	1	3	NA	2	NA	0.297222263	NA	2.660347772	1.158071561	2.297222263	2.531403509	1.265701754	2	NA	NA	1	NA	NA	0	4	NA	1	1	5.59E-37	1	6.32E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	60876750	C	T	-	-	-	-	-	-	46	0	0	36	8	22.2	37	4	10.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.108227545	1.108227545	1	1.055368421	1.055368421	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.04E-11	1	0.0000362	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	60934773	G	A	-	-	-	-	-	-	51	0	0	56	19	33.9	33	6	18.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	2.709293413	0.903097804	3	2.324491228	1.162245614	2	NA	NA	1	NA	NA	1	4	NA	1	1	6.79E-30	1	1.54E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	94976124	C	A	-	-	-	-	-	-	60	0	0	31	5	16.1	28	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.642714571	0.642714571	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.000000476	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	60971284	C	T	RORA	CCDS10177.1	r.?	-	-	intronic	49	0	0	55	6	10.9	44	3	6.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3.293619843	2	2	1	1	1	0.706380157	NA	3	NA	1	NA	0.293619843	0.544129741	0.544129741	1	0.684457377	0.684457377	1	NA	NA	0	NA	NA	0	4	NA	1	1	0.000000367	1	0.00142027	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	60975030	G	T	RORA	CCDS10177.1	r.?	-	-	intronic	32	0	0	63	18	28.6	39	5	12.8	216	1	0.5	478	141	29.5	292	34	11.6	2.47E-25	TRUE	TRUE	3	3.293619843	2	2	1	1	1	0.706380157	NA	3	NA	1	NA	0.293619843	1.427716567	1.427716567	1	1.288390357	1.288390357	1	1.472644711	0.736322355	2	1.167603761	1.167603761	1	4	3	1	0.661323205	7.98E-27	2.21E-201	0.00000156	5.06E-35	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	3	61007941	A	G	FHIT	CCDS2894.1	r.?	-	-	intronic	50	0	0	49	8	16.3	52	3	5.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	0.87142225	0.87142225	1	0.68277193	0.68277193	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.47E-10	1	0.002300591	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	61014942	C	T	FHIT	CCDS2894.1	r.?	-	-	intronic	52	0	0	50	10	20	33	5	15.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	1.069229754	1.069229754	1	1.789333333	1.789333333	1	NA	NA	0	NA	NA	1	4	NA	1	1	8.36E-14	1	0.00000066	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	3539397	G	T	CSMD1	ENST00000318252	r.?	-	-	intronic	55	0	0	28	10	35.7	24	7	29.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1	2.620991218	1	2	0	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.068149701	1.068149701	1	2.742732944	1.371366472	2	NA	NA	0	NA	NA	0	4	NA	1	1	1.18E-16	1	2.51E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	61059180	G	T	VWCE	CCDS8002.1	r.?	-	-	intronic	27	0	0	39	18	46.2	28	3	10.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	2.306311377	1.153155689	2	1.045596491	1.045596491	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.15E-31	1	0.000372895	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	17	61067613	G	A	-	-	-	-	-	-	51	0	0	20	5	25	26	2	7.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.998003992	0.998003992	1	0.675438596	0.675438596	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.55E-08	1	0.007502227	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	61102901	A	G	-	-	-	-	-	-	48	0	0	60	7	11.7	45	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	0.935065868	0.935065868	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	2.39E-08	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	61104496	T	A	-	-	-	-	-	-	30	0	0	48	5	10.4	31	2	6.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.519169661	0.519169661	1	0.635175439	0.635175439	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.00000447	1	0.010558179	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	61220337	A	G	-	-	-	-	-	-	53	0	0	46	12	26.1	38	2	5.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.563916168	1.563916168	1	0.570912281	0.570912281	1	NA	NA	1	NA	NA	1	4	NA	1	1	8.12E-18	1	0.015598339	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	61246617	T	C	-	-	-	-	-	-	55	0	0	40	8	20	35	11	31.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.198403194	1.198403194	1	3.382385965	1.691192982	2	NA	NA	1	NA	NA	1	4	NA	1	1	2.61E-11	1	1.82E-17	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	61248332	T	G	-	-	-	-	-	-	28	0	0	25	5	20	22	1	4.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	0.998403194	0.998403194	1	0.529736842	0.529736842	1	NA	NA	0	NA	NA	1	4	NA	1	1	0.000000153	1	0.104413009	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	61251597	T	A	PEX13	CCDS1866.1	r.?	-	-	intronic	34	0	0	78	24	30.8	42	2	4.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	2.461540918	0.820513639	3	0.613052632	0.613052632	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.63E-36	1	0.018854633	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	6248444	C	T	-	-	-	-	-	-	48	0	0	17	5	29.4	27	5	18.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1	2.620991218	1	2	0	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0.879652695	0.879652695	1	1.737690393	1.737690393	1	NA	NA	0	NA	NA	0	4	NA	1	1	1.84E-08	1	0.00000023	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	96043091	T	A	MANEA	CCDS5032.1	r.?	-	-	intronic	60	0	0	32	21	65.6	28	7	25	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.618762475	1.309381238	2	2.192982456	1.096491228	2	NA	NA	1	NA	NA	1	4	NA	1	1	5.84E-41	1	8.44E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	102660064	C	T	-	-	-	-	-	-	64	0	0	41	20	48.8	47	14	29.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.948103792	0.974051896	2	2.614035088	1.307017544	2	NA	NA	1	NA	NA	1	4	NA	1	1	2.32E-35	1	1.79E-21	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	17352482	T	C	SLC7A2	CCDS6002.2	r.?	-	-	upstream	27	0	0	30	18	60	18	5	27.8	233	2	0.9	145	31	21.4	255	51	20	2.18E-49	TRUE	TRUE	1	2.620991218	1	2	0	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.795209581	1.795209581	1	2.61123205	1.305616025	2	0.640291417	0.640291417	1	1.878584208	0.939292104	2	4	3	1	0.324837233	3.12E-34	1.03E-40	2.54E-08	2.65E-64	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	13	61426901	A	G	-	-	-	-	-	-	27	0	0	49	20	40.8	34	6	17.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.444742515	1.222371257	2	1.895859649	1.895859649	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.35E-33	1	1.86E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	61432594	C	T	-	-	-	-	-	-	58	0	0	53	22	41.5	26	3	11.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	2.21865174	1.10932587	2	1.35377193	1.35377193	1	NA	NA	0	NA	NA	1	4	NA	1	1	9.50E-37	1	0.000298167	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	61449393	T	A	-	-	-	-	-	-	48	0	0	34	9	26.5	29	3	10.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.322884232	1.322884232	1	1.006508772	1.006508772	1	NA	NA	1	NA	NA	1	4	NA	1	1	9.15E-14	1	0.000414371	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	61475541	G	A	DAGLA	CCDS31578.1	r.?	-	-	intronic	15	0	0	39	9	23.1	19	1	5.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.153155689	1.153155689	1	0.517912281	0.517912281	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.62E-13	1	0.090843738	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	104167600	T	A	-	-	-	-	-	-	65	0	0	29	10	34.5	36	4	11.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.377245509	1.377245509	1	0.973684211	0.973684211	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.79E-16	1	0.0000324	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	61499632	C	G	-	-	-	-	-	-	31	0	0	25	9	36	29	4	13.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.437125749	1.437125749	1	1.210526316	1.210526316	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.71E-15	1	0.0000134	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	61554340	C	T	-	-	-	-	-	-	56	0	0	55	8	14.5	40	3	7.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.868842315	0.868842315	1	0.807894737	0.807894737	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.86E-10	1	0.001075403	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	108746173	A	C	LACE1	CCDS5067.1	r.?	-	-	intronic	37	0	0	33	4	12.1	26	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.483033932	0.483033932	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.0000228	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	61626098	T	A	-	-	-	-	-	-	50	0	0	24	4	16.7	24	1	4.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.833666667	0.833666667	1	0.410421053	0.410421053	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.00000613	1	0.113346489	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	19383399	G	A	CSGALNACT1	CCDS6010.1	r.?	-	-	intronic	38	0	0	23	7	30.4	25	5	20	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1	2.620991218	1	2	0	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0.909572854	0.909572854	1	1.878584208	1.878584208	1	NA	NA	0	NA	NA	0	4	NA	1	1	1.79E-11	1	0.000000153	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	165755377	A	G	PDE10A	CCDS5289.1	r.?	-	-	intronic	56	0	0	24	14	58.3	25	4	16	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.327345309	1.163672655	2	1.403508772	1.403508772	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.14E-26	1	0.00000727	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	61707672	G	A	-	-	-	-	-	-	57	0	0	42	10	23.8	25	1	4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.1880998	1.1880998	1	0.390877193	0.390877193	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.24E-14	1	0.117779757	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	61738720	T	A	-	-	-	-	-	-	206	0	0	169	12	7.1	122	5	4.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7	6	5	4	2	2	1	1	NA	NA	NA	NA	NA	NA	0.638433134	0.638433134	1	0.523649123	0.523649123	1	NA	NA	1	NA	NA	0	4	NA	1	1	8.99E-11	1	0.000398828	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	61746219	T	G	-	-	-	-	-	-	43	0	0	52	17	32.7	33	3	9.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.297222263	4	2	2	2	2	0.702777737	1	3	NA	2	NA	0.297222263	NA	2.056580902	1.028290451	2	0.980245614	0.980245614	1	NA	NA	0	NA	NA	0	4	NA	1	1	1.42E-26	1	0.000609557	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	20216515	A	C	-	-	-	-	-	-	40	0	0	21	6	28.6	28	2	7.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1	2.620991218	1	2	0	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0.855716567	0.855716567	1	0.666897394	0.666897394	1	NA	NA	0	NA	NA	1	4	NA	1	1	7.95E-10	1	0.008668191	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	61763063	T	A	CDH8	CCDS10802.1	r.?	-	-	intronic	52	0	0	53	18	34	37	10	27	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	5.626372055	2	3	2	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	2.037285429	1.018642715	2	3.347541508	1.115847169	3	NA	NA	0	NA	NA	1	4	NA	1	1	2.09E-28	1	3.01E-15	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	8103683	G	C	GLCCI1	CCDS34601.1	r.?	-	-	intronic	46	0	0	47	5	10.6	32	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	7	4.260310284	4	2	3	2	1	0.739689716	NA	3	NA	2	NA	0.260310284	0.953153693	0.953153693	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	0.00000402	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	61798365	T	C	NFIA	CCDS44156.1	r.?	-	-	intronic	42	0	0	56	6	10.7	35	3	8.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	0.534145709	0.534145709	1	1.012385965	1.012385965	1	NA	NA	0	NA	NA	1	4	NA	1	1	0.000000409	1	0.000725791	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	61810501	A	T	-	-	-	-	-	-	63	0	0	60	5	8.3	25	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.497337325	0.497337325	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.0000136	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	24992244	G	T	-	-	-	-	-	-	61	0	0	23	8	34.8	26	3	11.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1	2.620991218	1	2	0	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.041221557	1.041221557	1	1.08018592	1.08018592	1	NA	NA	0	NA	NA	0	4	NA	1	1	1.79E-13	1	0.000298167	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	61857389	G	C	-	-	-	-	-	-	51	0	0	43	20	46.5	24	8	33.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3.293619843	2	2	1	1	1	0.706380157	NA	3	NA	1	NA	0.293619843	2.321287425	1.160643713	2	3.351828039	1.461370353	2.293619843	NA	NA	1	NA	NA	0	4	NA	1	1	8.21E-35	1	2.68E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	61879982	T	A	CDH8	CCDS10802.1	r.?	-	-	intronic	36	0	0	57	5	8.8	30	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	5.626372055	2	3	2	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	0.527297405	0.527297405	1	0	0	1	NA	NA	0	NA	NA	0	3	NA	1	1	0.0000105	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	27237209	C	A	PTK2B	CCDS6057.1	r.?	-	-	intronic	50	0	0	38	13	34.2	32	5	15.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1	2.620991218	1	2	0	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.023269461	1.023269461	1	1.465295683	1.465295683	1	NA	NA	0	NA	NA	1	4	NA	1	1	5.88E-21	1	0.000000562	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	62023193	C	A	-	-	-	-	-	-	48	0	0	36	7	19.4	34	3	8.8	0	0	NA	0	0	NA	2	0	0	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0.968451098	0.968451098	1	0.826577052	0.826577052	1	NA	NA	1	0	NA	0	4	NA	1	1	5.74E-10	1	0.000666058	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	62026546	A	T	-	-	-	-	-	-	46	0	0	45	4	8.9	36	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	4	3.588049503	2	2	2	1	1	0.411950497	NA	2	NA	2	NA	0.588049503	0.533289421	0.533289421	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	0.0000791	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	62032322	C	A	-	-	-	-	-	-	43	0	0	36	8	22.2	26	3	11.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.108227545	1.108227545	1	1.12377193	1.12377193	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.04E-11	1	0.000298167	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	62032323	C	A	-	-	-	-	-	-	44	0	0	35	8	22.9	28	3	10.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.143171657	1.143171657	1	1.045596491	1.045596491	1	NA	NA	1	NA	NA	1	4	NA	1	1	8.15E-12	1	0.000372895	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	27628155	C	T	ESCO2	CCDS34872.1	r.?	-	-	upstream	28	0	0	25	12	48	22	2	9.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1	2.620991218	1	2	0	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.436167665	1.436167665	1	0.854755815	0.854755815	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.20E-21	1	0.005403392	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	62050136	T	A	-	-	-	-	-	-	46	0	0	47	4	8.5	25	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.509321357	0.509321357	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.0000939	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	62071277	G	T	CDH8	CCDS10802.1	r.?	-	-	upstream	33	0	0	59	10	16.9	30	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	5.626372055	2	3	2	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	1.012650699	1.012650699	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	4.91E-13	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	62075279	C	A	-	-	-	-	-	-	48	0	0	47	37	78.7	31	12	38.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5	4.32434803	5	2	0	2	1	0.67565197	NA	3	NA	2	NA	0.32434803	5.502716567	1.100543313	5	4.29425953	1.84751142	2.32434803	NA	NA	0	NA	NA	0	4	NA	1	1	3.59E-76	1	3.16E-20	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	34508168	G	A	-	-	-	-	-	-	40	0	0	26	9	34.6	18	3	16.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1	2.620991218	1	2	0	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.035237525	1.035237525	1	1.568617814	1.568617814	1	NA	NA	0	NA	NA	0	4	NA	1	1	5.65E-15	1	0.0000964	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	62128678	C	G	PTPRG	CCDS2895.1	r.?	-	-	intronic	40	0	0	43	12	27.9	25	2	8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	1.491575507	1.491575507	1	0.941754386	0.941754386	1	NA	NA	0	NA	NA	1	4	NA	1	1	3.24E-18	1	0.006948068	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	62175987	T	A	-	-	-	-	-	-	40	0	0	32	6	18.8	32	2	6.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.938499002	0.938499002	1	0.605859649	0.605859649	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.27E-08	1	0.011224977	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	62212409	T	C	-	-	-	-	-	-	55	0	0	36	4	11.1	39	3	7.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.665113772	0.665113772	1	0.829438596	0.829438596	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.0000324	1	0.000998458	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	62228963	A	G	FAM19A2	CCDS8962.1	r.?	-	-	intronic	42	0	0	40	9	22.5	35	1	2.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.123203593	1.123203593	1	0.283385965	0.283385965	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.64E-13	1	0.16091139	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	62250001	C	T	COMMD1	CCDS1869.1	r.?	-	-	intronic	55	0	0	65	6	9.2	57	2	3.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	0.735265469	0.735265469	1	0.447017544	0.447017544	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.000001	1	0.03327602	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	17	62294803	C	T	TEX2	CCDS11658.1	r.?	-	-	intronic	26	0	0	38	12	31.6	35	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.261477046	1.261477046	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	5.86E-19	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	62306979	G	A	-	-	-	-	-	-	57	0	0	42	6	14.3	33	5	15.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.856858283	0.856858283	1	1.637333333	1.637333333	1	NA	NA	1	NA	NA	1	4	NA	1	1	7.02E-08	1	0.00000066	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	62358940	G	A	-	-	-	-	-	-	44	0	0	49	14	28.6	40	7	17.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.713716567	0.856858283	2	1.885087719	1.885087719	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.50E-21	1	1.26E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	62374683	A	T	LPHN3	ENST00000512091	r.?	-	-	intronic	45	0	0	42	6	14.3	34	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.713858283	0.713858283	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	7.02E-08	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	62388418	C	T	-	-	-	-	-	-	17	0	0	31	18	58.1	21	6	28.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.319361277	1.159680639	2	2.50877193	1.254385965	2	NA	NA	1	NA	NA	1	4	NA	1	1	7.40E-34	1	7.95E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	62410728	G	C	GANAB	CCDS41656.1	r.?	-	-	intronic	28	0	0	46	9	19.6	42	5	11.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.97843513	0.97843513	1	1.162859649	1.162859649	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.82E-12	1	0.00000228	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	62459619	T	C	-	-	-	-	-	-	59	0	0	38	16	42.1	17	3	17.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.522638723	1.261319361	2	1.895859649	1.895859649	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.06E-27	1	0.0000807	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	62474697	G	A	INADL	CCDS617.2	r.?	-	-	intronic	51	0	0	55	12	21.8	36	8	22.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.088259481	1.088259481	1	2.613368421	0.871122807	3	NA	NA	0	NA	NA	1	4	NA	1	1	8.78E-17	1	1.04E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	62481573	C	A	-	-	-	-	-	-	57	0	0	22	10	45.5	27	7	25.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.816367265	0.908183633	2	2.271929825	1.135964912	2	NA	NA	1	NA	NA	1	4	NA	1	1	5.98E-18	1	6.36E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	62521641	T	C	-	-	-	-	-	-	61	0	0	48	14	29.2	46	10	21.7	0	0	NA	1	0	0	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.749668663	0.874834331	2	2.337508772	1.168754386	2	0	0	1	NA	NA	1	4	NA	1	1	2.51E-21	1	3.38E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	62541676	C	G	LPHN3	ENST00000512091	r.?	-	-	intronic	48	0	0	52	7	13.5	25	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.673922156	0.673922156	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	8.58E-09	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	62575424	G	C	LPHN3	ENST00000512091	r.?	-	-	intronic	54	0	0	48	21	43.8	32	8	25	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	2.186502994	1.093251497	2	2.442982456	1.221491228	2	NA	NA	1	NA	NA	1	4	NA	1	1	9.35E-36	1	3.69E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	62637736	C	T	KHDRBS2	CCDS4963.1	r.?	-	-	intronic	46	0	0	31	5	16.1	25	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.642714571	0.642714571	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.000000476	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	39049049	T	C	ADAM32	CCDS47846.1	r.?	-	-	intronic	44	0	0	29	11	37.9	31	6	19.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1	2.620991218	1	2	0	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.133974052	1.133974052	1	1.822226682	1.822226682	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.56E-18	1	1.03E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	62642233	T	C	-	-	-	-	-	-	32	0	0	31	20	64.5	22	3	13.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.574850299	1.28742515	2	1.192982456	1.192982456	1	NA	NA	1	NA	NA	1	4	NA	1	1	7.66E-39	1	0.000179267	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	62648569	C	T	-	-	-	-	-	-	54	0	0	51	9	17.6	40	3	7.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	0.87859481	0.87859481	1	0.882894737	0.882894737	1	NA	NA	0	NA	NA	1	4	NA	1	1	4.92E-12	1	0.001075403	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	62687555	C	T	-	-	-	-	-	-	45	0	0	77	25	32.5	50	7	14	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	2.59740519	0.86580173	3	1.788070175	1.788070175	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.69E-38	1	6.46E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	62701326	A	C	-	-	-	-	-	-	32	0	0	47	6	12.8	29	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.766978044	0.766978044	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.000000141	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	43286375	C	T	-	-	-	-	-	-	37	0	0	28	11	39.3	28	5	17.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1	2.620991218	1	2	0	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.175862275	1.175862275	1	1.681332867	1.681332867	1	NA	NA	0	NA	NA	0	4	NA	1	1	9.70E-19	1	0.000000279	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	62732317	C	T	-	-	-	-	-	-	51	0	0	22	11	50	28	6	21.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.996007984	0.998003992	2	1.877192982	1.877192982	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.27E-20	1	5.36E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	62759313	T	C	RHOBTB1	CCDS7261.1	r.?	-	-	intronic	48	0	0	48	12	25	27	5	18.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.297222263	4	2	2	2	2	0.702777737	1	3	NA	2	NA	0.297222263	NA	1.572309558	1.572309558	1	1.992807018	1.992807018	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.44E-17	1	0.00000023	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	60119161	C	T	-	-	-	-	-	-	44	0	0	45	18	40	35	11	31.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.996806387	0.998403194	2	2.949377207	1.474688604	2	NA	NA	1	NA	NA	0	4	NA	1	1	5.76E-30	1	1.82E-17	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	62773943	G	A	-	-	-	-	-	-	23	0	0	36	16	44.4	26	6	23.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7.617024881	5	4	3	3	2	0.382975119	1	5	NA	3	NA	0.617024881	NA	4.266414137	1.066603534	4	2.719315789	0.906438596	3	NA	NA	0	NA	NA	0	4	NA	1	1	1.01E-27	1	3.30E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	62833153	C	T	-	-	-	-	-	-	44	0	0	83	18	21.7	33	5	15.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7	6	5	4	2	2	1	1	NA	NA	NA	NA	NA	NA	1.951267465	0.975633733	2	1.941333333	1.941333333	1	NA	NA	1	NA	NA	0	4	NA	1	1	2.09E-24	1	0.00000066	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	62839445	C	A	KHDRBS2	CCDS4963.1	r.?	-	-	intronic	57	0	0	40	25	62.5	34	6	17.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.49500998	1.24750499	2	1.543859649	1.543859649	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.12E-47	1	1.86E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	62840379	A	C	-	-	-	-	-	-	47	0	0	36	21	58.3	30	6	20	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.327345309	1.163672655	2	1.754385965	1.754385965	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.47E-39	1	8.37E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	10738427	A	C	-	-	-	-	-	-	40	0	0	53	22	41.5	25	3	12	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7	4.260310284	4	2	3	2	1	0.739689716	NA	3	NA	2	NA	0.260310284	3.731686627	0.932921657	4	1.323868813	1.323868813	1	NA	NA	1	NA	NA	0	4	NA	1	1	9.50E-37	1	0.00026475	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	62866363	G	A	-	-	-	-	-	-	50	0	0	35	11	31.4	22	3	13.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	1.678690714	1.019942993	1.645867197	1.600982456	1.600982456	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.82E-17	1	0.000179267	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	62877808	C	T	-	-	-	-	-	-	58	0	0	42	12	28.6	33	5	15.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.141716567	1.141716567	1	1.333333333	1.333333333	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.35E-18	1	0.00000066	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	62952238	A	G	-	-	-	-	-	-	63	0	0	32	12	37.5	25	10	40	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.872005988	0.936002994	2	3.757168417	1.878584208	2	NA	NA	1	NA	NA	0	4	NA	1	1	5.03E-20	1	2.98E-17	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	62966189	C	T	-	-	-	-	-	-	55	0	0	43	12	27.9	26	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.113772455	1.113772455	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	3.24E-18	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	62972748	A	T	MON2	CCDS31849.1	r.?	-	-	intronic	43	0	0	47	4	8.5	42	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.424321357	0.424321357	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.0000939	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	65879752	G	T	-	-	-	-	-	-	38	0	0	32	9	28.1	30	7	23.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.402756487	1.402756487	1	2.188550603	1.094275301	2	NA	NA	1	NA	NA	0	4	NA	1	1	4.94E-14	1	1.44E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	67114567	C	A	-	-	-	-	-	-	51	0	0	43	6	14	39	3	7.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0.698882236	0.698882236	1	0.72325492	0.72325492	1	NA	NA	1	NA	NA	0	4	NA	1	1	8.13E-08	1	0.000998458	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	63067384	A	T	-	-	-	-	-	-	49	0	0	27	5	18.5	27	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.738522954	0.738522954	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.00000023	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	63123786	G	T	-	-	-	-	-	-	46	0	0	45	9	20	45	2	4.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.998403194	0.998403194	1	0.429964912	0.429964912	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.47E-12	1	0.021467209	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	63146327	T	C	-	-	-	-	-	-	59	0	0	63	17	27	39	3	7.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.297222263	4	2	2	2	2	0.702777737	1	3	NA	2	NA	0.297222263	NA	1.698094322	0.849047161	2	0.829438596	0.829438596	1	NA	NA	0	NA	NA	1	4	NA	1	1	6.22E-25	1	0.000998458	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	63153409	G	A	EHBP1	CCDS1872.1	r.?	-	-	intronic	58	0	0	91	17	18.7	43	3	7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	1.494506986	1.494506986	1	0.894035088	0.894035088	1	NA	NA	1	NA	NA	1	4	NA	1	1	6.18E-22	1	0.001328364	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	63157779	A	T	EHBP1	CCDS1872.1	r.?	-	-	intronic	45	0	0	66	9	13.6	42	1	2.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	1.086914172	1.086914172	1	0.306526316	0.306526316	1	NA	NA	1	NA	NA	1	4	NA	1	1	5.59E-11	1	0.189842622	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	63177250	C	A	-	-	-	-	-	-	60	0	0	37	22	59.5	34	4	11.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.375249501	1.18762475	2	1.035087719	1.035087719	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.08E-41	1	0.0000257	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	63202297	T	A	-	-	-	-	-	-	50	0	0	49	11	22.4	39	1	2.6	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.118211577	1.118211577	1	0.244215947	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	1.19E-15	1	0.177567718	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	15652259	A	G	MEOX2	CCDS34605.1	r.?	-	-	intronic	48	0	0	57	21	36.8	34	7	20.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7	4.260310284	4	2	3	2	1	0.739689716	NA	3	NA	2	NA	0.260310284	3.309061876	1.103020625	3	2.272641462	1.005455525	2.260310284	NA	NA	1	NA	NA	0	4	NA	1	1	8.56E-34	1	3.73E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	63236256	T	C	-	-	-	-	-	-	47	0	0	42	17	40.5	41	13	31.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	2.021766467	1.010883234	2	2.97755597	1.488777985	2	NA	NA	1	NA	NA	0	4	NA	1	1	1.73E-28	1	1.89E-20	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	63284023	G	A	OTX1	CCDS1873.1	r.1913g>a	c.?	p.?	3'UTR variant	12	0	0	54	10	18.5	8	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	1.478522954	1.478522954	1	0	0	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.91E-13	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	63312860	G	C	-	-	-	-	-	-	49	0	0	41	5	12.2	28	4	14.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	5.626372055	2	3	2	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	0.731025948	0.731025948	1	1.772957169	1.772957169	1	NA	NA	0	NA	NA	0	4	NA	1	1	0.00000202	1	0.0000116	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	63314872	G	A	-	-	-	-	-	-	38	0	0	49	15	30.6	23	2	8.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.297222263	4	2	2	2	2	0.702777737	1	3	NA	2	NA	0.297222263	NA	1.924506899	0.962253449	2	0.937157895	0.937157895	1	NA	NA	0	NA	NA	1	4	NA	1	1	4.10E-23	1	0.00589844	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	63319316	C	G	-	-	-	-	-	-	56	0	0	50	9	18	43	4	9.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.898562874	0.898562874	1	0.908789474	0.908789474	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.07E-12	1	0.000066	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	63340125	C	T	-	-	-	-	-	-	55	0	0	42	6	14.3	38	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.713858283	0.713858283	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	7.02E-08	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	63340767	G	C	-	-	-	-	-	-	55	0	0	52	6	11.5	45	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.574081836	0.574081836	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.000000261	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	70392688	C	G	SULF1	CCDS6204.1	r.?	-	-	intronic	53	0	0	31	5	16.1	24	2	8.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0.803714571	0.803714571	1	0.779612447	0.779612447	1	NA	NA	1	NA	NA	0	4	NA	1	1	0.000000476	1	0.006413403	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	63350846	A	G	-	-	-	-	-	-	44	0	0	37	10	27	39	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.617844311	1.617844311	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	3.01E-15	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	63387742	A	C	-	-	-	-	-	-	74	0	0	48	14	29.2	29	5	17.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.749668663	0.874834331	2	1.85277193	1.85277193	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.51E-21	1	0.000000336	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	18748411	G	T	HDAC9	CCDS47554.1	r.?	-	-	intronic	38	0	0	66	18	27.3	42	10	23.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7.505836279	4.260310284	5	2	2	2	0.494163721	0.739689716	6	3	2	2	0.505836279	0.260310284	2.592913663	1.03474983	2.505836279	2.625673146	1.161642791	2.260310284	NA	NA	0	NA	NA	0	4	NA	1	1	2.08E-26	1	1.24E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	63456583	A	G	C10orf107	CCDS7262.1	r.?	-	-	intronic	62	0	0	58	23	39.7	42	9	21.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.297222263	4	2	2	2	2	0.702777737	1	3	NA	2	NA	0.297222263	NA	2.496827578	1.086889857	2.297222263	2.305192982	1.152596491	2	NA	NA	0	NA	NA	0	4	NA	1	1	8.87E-38	1	7.51E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	63494506	T	C	RTN3	CCDS8050.1	r.?	-	-	intronic	25	0	0	27	4	14.8	23	1	4.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.738818363	0.738818363	1	0.420192982	0.420192982	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.00001	1	0.108890944	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	63516585	G	T	-	-	-	-	-	-	59	0	0	44	20	45.5	33	10	30.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	5.626372055	2	3	2	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	2.726367265	1.363183633	2	3.75668547	1.25222849	3	NA	NA	0	NA	NA	1	4	NA	1	1	1.50E-34	1	8.14E-16	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	63589252	A	T	-	-	-	-	-	-	52	0	0	33	5	15.2	36	8	22.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	5.626372055	2	3	2	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	0.910786427	0.910786427	1	2.752423017	0.917474339	3	NA	NA	0	NA	NA	0	4	NA	1	1	0.00000066	1	1.04E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	76384490	T	C	HNF4G	ENST00000354370	r.?	-	-	intronic	51	0	0	48	13	27.1	38	6	15.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.352836327	1.352836327	1	1.484081525	1.484081525	1	NA	NA	1	NA	NA	0	4	NA	1	1	2.00E-19	1	3.76E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	63655537	T	G	-	-	-	-	-	-	44	0	0	70	8	11.4	54	6	11.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7	6	5	4	2	2	1	1	NA	NA	NA	NA	NA	NA	1.02508982	1.02508982	1	1.417684211	1.417684211	1	NA	NA	1	NA	NA	0	4	NA	1	1	2.80E-09	1	0.000000329	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	63677119	T	G	-	-	-	-	-	-	45	0	0	47	16	34	40	6	15	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.697285429	0.848642715	2	1.465789474	1.465789474	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.98E-25	1	5.18E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	63741709	G	C	RHOJ	CCDS9757.1	r.?	-	-	intronic	43	0	0	32	9	28.1	26	1	3.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.121756487	1.121756487	1	0.333333333	0.333333333	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.94E-14	1	0.122190858	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	63785601	T	A	-	-	-	-	-	-	53	0	0	43	6	14	37	1	2.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.698882236	0.698882236	1	0.263842105	0.263842105	1	NA	NA	1	NA	NA	1	4	NA	1	1	8.13E-08	1	0.169281299	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	63799861	C	G	-	-	-	-	-	-	40	0	0	46	14	30.4	26	7	26.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.821572854	0.910786427	2	2.897649123	1.448824561	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.26E-21	1	4.73E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	63853631	C	A	ARID5B	CCDS31208.1	r.4819c>a	c.?	p.?	3'UTR variant	47	0	0	51	6	11.8	36	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.297222263	4	2	2	2	2	0.702777737	1	3	NA	2	NA	0.297222263	NA	0.742130111	0.742130111	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.000000232	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	76522962	A	G	-	-	-	-	-	-	44	0	0	34	13	38.2	38	17	44.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.9069501	0.95347505	2	4.198635706	2.099317853	2	NA	NA	1	NA	NA	0	4	NA	1	1	1.03E-21	1	1.99E-29	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	63879132	C	T	RGS7BP	CCDS34170.1	r.?	-	-	intronic	31	0	0	46	6	13	36	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.778962076	0.778962076	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.000000123	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	77504538	G	T	-	-	-	-	-	-	37	0	0	42	18	42.9	40	15	37.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	2.14157485	1.070787425	2	3.522345391	1.761172695	2	NA	NA	1	NA	NA	0	4	NA	1	1	1.20E-30	1	1.09E-24	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	63905128	A	C	RGS7BP	CCDS34170.1	r.1149a>c	c.?	p.?	3'UTR variant	51	0	0	46	6	13	30	4	13.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.778962076	0.778962076	1	1.432666667	1.432666667	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.000000123	1	0.0000154	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	63975904	T	G	TTPA	CCDS6178.1	r.?	-	-	intronic	49	0	0	47	11	23.4	31	1	3.2	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.168131737	1.168131737	1	0.300573473	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	7.21E-16	1	0.143917729	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	63979007	G	T	-	-	-	-	-	-	38	0	0	41	8	19.5	32	5	15.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.973443114	0.973443114	1	1.524421053	1.524421053	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.22E-11	1	0.000000562	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	63982235	G	A	-	-	-	-	-	-	52	0	0	65	20	30.8	39	4	10.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.845540918	0.922770459	2	1.109508772	1.109508772	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.18E-30	1	0.0000447	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	64006786	C	T	VEGFB	CCDS8062.1	r.?	-	-	downstream	28	0	0	59	9	15.3	34	2	5.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.763778443	0.763778443	1	0.57654386	0.57654386	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.96E-11	1	0.012612579	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	17	64019336	A	T	CCDC46	CCDS32710.1	r.?	-	-	intronic	59	0	0	37	12	32.4	35	6	17.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.293413174	1.293413174	1	1.5	1.5	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.03E-19	1	2.24E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	64020724	G	A	LGSN	CCDS4964.1	r.?	-	-	intronic	47	0	0	34	22	64.7	30	7	23.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.582834331	1.291417166	2	2.043859649	1.021929825	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.23E-42	1	1.44E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	78401333	T	C	-	-	-	-	-	-	46	0	0	49	7	14.3	48	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0.713858283	0.713858283	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	5.58E-09	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	64061185	C	A	-	-	-	-	-	-	37	0	0	54	6	11.1	32	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	7	6	5	4	2	2	1	1	NA	NA	NA	NA	NA	NA	0.998113772	0.998113772	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	0.000000329	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	64117187	G	T	-	-	-	-	-	-	32	0	0	42	6	14.3	33	4	12.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.713858283	0.713858283	1	1.182403509	1.182403509	1	NA	NA	1	NA	NA	1	4	NA	1	1	7.02E-08	1	0.0000228	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	82824052	A	G	-	-	-	-	-	-	46	0	0	40	6	15	30	0	0	116	0	0	305	24	7.9	240	2	0.8	0.693089881	FALSE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0.748802395	0.748802395	1	0	NA	0	0.394369261	0.394369261	1	0.075143368	NA	0	NA	NA	1	1	5.18E-08	4.13E-21	1	0.33755348	YES	1_1	0_0	somatic	custom.pulldown.HiSeq
PD9852b	5	64131589	G	A	CWC27	CCDS3982.2	r.?	-	-	intronic	55	0	0	50	15	30	39	17	43.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.79760479	0.898802395	2	4.696561404	2.348280702	2	NA	NA	1	NA	NA	1	4	NA	1	1	5.83E-23	1	3.51E-29	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	64153677	G	T	-	-	-	-	-	-	51	0	0	54	6	11.1	42	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.665113772	0.665113772	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.000000329	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	64156353	T	G	CWC27	CCDS3982.2	r.?	-	-	intronic	44	0	0	37	13	35.1	24	5	20.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.103197605	1.051598802	2	2.240561404	2.240561404	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.89E-21	1	0.000000123	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	64160277	C	G	ZC4H2	CCDS14380.1	r.?	-	-	intronic	45	0	0	59	39	66.1	32	11	34.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5	4	5	4	0	0	1	1	NA	NA	NA	NA	NA	NA	4.621722555	0.924344511	5	3.70554386	0.926385965	4	NA	NA	1	NA	NA	0	4	NA	1	1	4.61E-75	1	5.72E-18	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	64162490	C	G	-	-	-	-	-	-	24	0	0	43	21	48.8	28	5	17.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	2.436103792	1.218051896	2	1.681332867	1.681332867	1	NA	NA	1	NA	NA	0	4	NA	1	1	4.52E-37	1	0.000000279	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	64165260	T	G	-	-	-	-	-	-	43	0	0	42	20	47.6	43	7	16.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.852199601	1.4260998	2	1.755824561	1.755824561	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.41E-35	1	2.15E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	64190135	T	A	-	-	-	-	-	-	52	0	0	40	16	40	37	8	21.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.996806387	0.998403194	2	2.028870945	1.014435473	2	NA	NA	1	NA	NA	0	4	NA	1	1	8.56E-27	1	1.33E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	64195828	G	A	-	-	-	-	-	-	48	0	0	60	8	13.3	40	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	7	6	5	4	2	2	1	1	NA	NA	NA	NA	NA	NA	1.195938124	1.195938124	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	7.93E-10	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	64218765	A	C	VPS54	CCDS33208.1	r.?	-	-	intronic	41	0	0	62	9	14.5	35	1	2.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	1.158842315	1.158842315	1	0.370385965	0.370385965	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.12E-11	1	0.16091139	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	64222250	G	A	ZC4H2	ENST00000337990	r.?	-	-	intronic	8	0	0	23	6	26.1	2	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	5	4	5	4	0	0	1	1	NA	NA	NA	NA	NA	NA	1.824916168	1.824916168	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	1.47E-09	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	64222263	G	A	ZC4H2	ENST00000337990	r.?	-	-	intronic	11	0	0	29	6	20.7	4	0	0	0	0	NA	0	0	NA	1	0	0	1	FALSE	FALSE	5	4	5	4	0	0	1	1	NA	NA	NA	NA	NA	NA	1.447347305	1.447347305	1	0	NA	0	NA	NA	1	0	NA	0	NA	NA	1	1	6.72E-09	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	64248729	A	T	-	-	-	-	-	-	57	0	0	57	19	33.3	46	6	13	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	5.626372055	2	3	2	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	1.995341317	0.997670659	2	1.611779244	1.611779244	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.01E-29	1	0.000000123	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	64264851	T	C	-	-	-	-	-	-	36	0	0	70	10	14.3	42	2	4.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	1.142858283	1.142858283	1	0.613052632	0.613052632	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.95E-12	1	0.018854633	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	64290614	G	A	ROR1	CCDS626.1	r.?	-	-	intronic	48	0	0	31	13	41.9	35	12	34.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	2.091654691	1.045827345	2	4.03777193	1.345923977	3	NA	NA	0	NA	NA	1	4	NA	1	1	2.32E-22	1	1.83E-19	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	64331774	T	C	-	-	-	-	-	-	23	0	0	36	9	25	13	3	23.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.498003992	1.498003992	1	2.488315789	2.488315789	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.63E-13	1	0.0000344	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	64331775	G	A	-	-	-	-	-	-	22	0	0	37	9	24.3	13	3	23.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.45605988	1.45605988	1	2.488315789	2.488315789	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.14E-13	1	0.0000344	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	64368171	T	G	ZNF365	CCDS7264.1	r.?	-	-	intronic	10	0	0	48	13	27.1	30	6	20	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.297222263	4	2	2	2	2	0.702777737	1	3	NA	2	NA	0.297222263	NA	1.704383561	0.85219178	2	2.154385965	1.077192982	2	NA	NA	0	NA	NA	1	4	NA	1	1	2.00E-19	1	8.37E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	64431686	T	C	-	-	-	-	-	-	26	0	0	41	12	29.3	24	6	25	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	1.56642159	1.56642159	1	2.942982456	0.980994152	3	NA	NA	0	NA	NA	1	4	NA	1	1	1.69E-18	1	1.95E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	87206015	C	T	-	-	-	-	-	-	32	0	0	32	12	37.5	40	5	12.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.872005988	0.936002994	2	1.17411513	1.17411513	1	NA	NA	1	NA	NA	0	4	NA	1	1	5.03E-20	1	0.00000178	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	64464585	T	C	-	-	-	-	-	-	33	0	0	66	9	13.6	46	3	6.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	1.086914172	1.086914172	1	0.830175439	0.830175439	1	NA	NA	1	NA	NA	1	4	NA	1	1	5.59E-11	1	0.001615827	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	89130693	A	G	MMP16	CCDS6246.1	r.?	-	-	intronic	52	0	0	42	16	38.1	42	11	26.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.901958084	0.950979042	2	2.460945313	1.230472657	2	NA	NA	1	NA	NA	0	4	NA	1	1	2.25E-26	1	1.81E-16	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	64530811	T	C	-	-	-	-	-	-	70	0	0	42	21	50	32	7	21.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	2.496007984	1.248003992	2	2.140052632	1.070026316	2	NA	NA	1	NA	NA	1	4	NA	1	1	2.32E-37	1	2.36E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	64566161	G	A	ADAMTS9	CCDS2903.1	r.?	-	-	intronic	36	0	0	37	10	27	26	3	11.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	1.443460168	1.443460168	1	1.35377193	1.35377193	1	NA	NA	0	NA	NA	1	4	NA	1	1	3.01E-15	1	0.000298167	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	64593573	C	T	-	-	-	-	-	-	43	0	0	62	15	24.2	35	4	11.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.208067864	1.208067864	1	1.070792999	1.070792999	1	NA	NA	1	NA	NA	0	4	NA	1	1	2.28E-21	1	0.0000289	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	64622757	T	C	-	-	-	-	-	-	51	0	0	39	10	25.6	37	7	18.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.277956088	1.277956088	1	1.846894737	1.846894737	1	NA	NA	1	NA	NA	1	4	NA	1	1	5.44E-15	1	7.05E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	64705423	T	G	-	-	-	-	-	-	54	0	0	42	9	21.4	42	2	4.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.068291417	1.068291417	1	0.45086021	0.45086021	1	NA	NA	1	NA	NA	0	4	NA	1	1	7.51E-13	1	0.018854633	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	64714207	T	A	-	-	-	-	-	-	52	0	0	49	14	28.6	34	5	14.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	5.626372055	2	3	2	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	1.713716567	0.856858283	2	1.822550376	1.822550376	1	NA	NA	0	NA	NA	1	4	NA	1	1	3.50E-21	1	0.000000771	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	64718006	A	G	-	-	-	-	-	-	55	0	0	30	5	16.7	30	1	3.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.833666667	0.833666667	1	0.322473684	0.322473684	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.000000401	1	0.139615808	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	64753473	A	G	-	-	-	-	-	-	61	0	0	55	7	12.7	37	5	13.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.297222263	4	2	2	2	2	0.702777737	1	3	NA	2	NA	0.297222263	NA	0.798733255	0.798733255	1	1.454210526	1.454210526	1	NA	NA	0	NA	NA	0	4	NA	1	1	1.28E-08	1	0.00000119	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	64800665	G	A	ZNF609	CCDS32270.1	r.?	-	-	intronic	45	0	0	44	13	29.5	30	8	26.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3.293619843	2	2	1	1	1	0.706380157	NA	3	NA	1	NA	0.293619843	1.472644711	1.472644711	1	2.687501761	1.171729382	2.293619843	NA	NA	1	NA	NA	1	4	NA	1	1	5.49E-20	1	2.07E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	64809674	C	T	-	-	-	-	-	-	42	0	0	25	15	60	23	7	30.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.395209581	1.19760479	2	2.666666667	1.333333333	2	NA	NA	1	NA	NA	1	4	NA	1	1	9.52E-29	1	1.79E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	64823072	C	T	-	-	-	-	-	-	53	0	0	36	5	13.9	20	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.55489022	0.55489022	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.00000104	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	64832304	A	G	ZNF609	CCDS32270.1	r.?	-	-	intronic	33	0	0	32	11	34.4	29	7	24.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3.293619843	2	2	1	1	1	0.706380157	NA	3	NA	1	NA	0.293619843	1.717253493	0.858626747	2	2.42579747	1.057628394	2.293619843	NA	NA	1	NA	NA	1	4	NA	1	1	5.72E-18	1	1.11E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	64872681	T	C	SERTAD2	CCDS33210.1	r.?	-	-	intronic	40	0	0	79	17	21.5	29	8	27.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	1.718283433	0.859141717	2	3.525052632	0.881263158	4	NA	NA	1	NA	NA	1	4	NA	1	1	4.55E-23	1	1.53E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	64879295	G	A	-	-	-	-	-	-	79	0	0	47	6	12.8	37	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.766978044	0.766978044	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.000000141	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	100269892	C	A	VPS13B	CCDS6280.1	r.?	-	-	intronic	64	0	0	43	7	16.3	66	4	6.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0.813698603	0.813698603	1	0.572968184	0.572968184	1	NA	NA	1	NA	NA	0	4	NA	1	1	2.15E-09	1	0.000351793	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	64918345	T	G	-	-	-	-	-	-	67	0	0	61	4	6.6	37	2	5.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	0.527473054	0.527473054	1	0.689684211	0.689684211	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.000259828	1	0.014826063	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	101389347	T	C	-	-	-	-	-	-	64	0	0	43	21	48.8	33	6	18.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	2.436103792	1.218051896	2	1.70951163	1.70951163	1	NA	NA	1	NA	NA	0	4	NA	1	1	4.52E-37	1	1.54E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	103090027	C	T	NCALD	CCDS6292.1	r.?	-	-	intronic	40	0	0	53	9	17	43	4	9.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0.848642715	0.848642715	1	0.873541657	0.873541657	1	NA	NA	1	NA	NA	0	4	NA	1	1	7.10E-12	1	0.000066	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	64979293	G	C	-	-	-	-	-	-	35	0	0	36	9	25	30	2	6.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.248003992	1.248003992	1	0.654719298	0.654719298	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.63E-13	1	0.009909649	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	65064117	G	C	CACHD1	CCDS628.2	r.?	-	-	intronic	49	0	0	48	7	14.6	33	2	6.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	0.728834331	0.728834331	1	0.718087719	0.718087719	1	NA	NA	0	NA	NA	1	4	NA	1	1	4.81E-09	1	0.011909843	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	65064982	C	A	-	-	-	-	-	-	35	0	0	42	7	16.7	41	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0.833666667	0.833666667	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	1.81E-09	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	65104701	T	G	-	-	-	-	-	-	49	0	0	42	17	40.5	38	10	26.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.426766467	1.213383234	2	2.833017544	1.416508772	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.73E-28	1	4.06E-15	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	65116157	G	T	EYS	CCDS47445.1	r.?	-	-	intronic	59	0	0	35	20	57.1	34	11	32.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.279441118	1.139720559	2	2.842105263	1.421052632	2	NA	NA	1	NA	NA	1	4	NA	1	1	2.88E-37	1	1.26E-17	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	107610813	C	T	OXR1	CCDS47909.1	r.?	-	-	intronic	62	0	0	57	14	24.6	47	1	2.1	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.228035928	1.228035928	1	0.197251342	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	3.84E-20	1	0.209895027	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	65142775	C	T	CDH11	CCDS10803.1	r.?	-	-	intronic	21	0	0	41	11	26.8	23	4	17.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	5.626372055	2	3	2	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	1.605860279	1.605860279	1	2.157304527	2.157304527	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.34E-16	1	0.00000513	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	112487806	G	T	-	-	-	-	-	-	50	0	0	32	16	50	28	11	39.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	2.496007984	1.248003992	2	3.69141797	1.845708985	2	NA	NA	1	NA	NA	0	4	NA	1	1	8.51E-29	1	9.70E-19	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	65187238	T	C	TECRL	CCDS33990.1	r.?	-	-	intronic	46	0	0	35	4	11.4	34	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.56908982	0.56908982	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.0000289	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	65222081	T	C	-	-	-	-	-	-	47	0	0	36	8	22.2	27	1	3.7	142	0	0	338	81	24	307	33	10.7	1.60E-23	TRUE	TRUE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	1.186845027	1.186845027	1	0.435561404	0.435561404	1	1.283075705	0.779574262	1.645867197	1.259596491	1.259596491	1	4	3	1	1	1.04E-11	4.01E-108	0.126579904	7.07E-33	YES	1_1	0_1	somatic	custom.pulldown.HiSeq
PD9852b	18	65305300	C	A	AC114689.1	ENST00000500778	r.?	-	-	intronic	30	0	0	27	16	59.3	16	1	6.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.367265469	1.183632735	2	0.543859649	0.543859649	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.89E-30	1	0.077068876	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	65387347	A	T	EYS	CCDS47445.1	r.?	-	-	intronic	62	0	0	34	7	20.6	33	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.822355289	0.822355289	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	3.73E-10	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	65433271	G	A	EYS	CCDS47445.1	r.?	-	-	intronic	48	0	0	27	13	48.1	37	5	13.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.920159681	0.96007984	2	1.184210526	1.184210526	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.29E-23	1	0.00000119	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	65435837	G	A	-	-	-	-	-	-	40	0	0	47	7	14.9	26	3	11.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.892810379	0.892810379	1	1.23877193	1.23877193	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.12E-09	1	0.000298167	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	65467724	C	A	EYS	CCDS47445.1	r.?	-	-	intronic	26	0	0	28	6	21.4	19	3	15.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.854291417	0.854291417	1	1.385964912	1.385964912	1	NA	NA	1	NA	NA	1	4	NA	1	1	5.36E-09	1	0.000114071	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	65533111	G	C	AC099680.1	ENST00000500320	r.?	-	-	intronic	17	0	0	12	6	50	0	0	NA	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	2.496007984	1.248003992	2	NA	NA	1	NA	NA	0	NA	NA	1	NA	NA	1	1	1.41E-11	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	121677521	G	A	SNTB1	CCDS6334.1	r.?	-	-	intronic	42	0	0	21	6	28.6	18	2	11.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.427716567	1.427716567	1	1.042614236	1.042614236	1	NA	NA	1	NA	NA	0	4	NA	1	1	7.95E-10	1	0.003626632	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	128849493	G	T	PVT1	CCDS3617.1	r.?	-	-	intronic	23	0	0	34	15	44.1	22	6	27.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	2.201479042	1.100739521	2	2.564267445	1.282133722	2	NA	NA	1	NA	NA	0	4	NA	1	1	5.18E-26	1	1.09E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	65560713	T	A	OVOL1	CCDS8112.1	r.?	-	-	intronic	15	0	0	32	8	25	12	1	8.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.248003992	1.248003992	1	0.811070175	0.811070175	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.69E-12	1	0.058377193	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	65562234	G	A	EYS	CCDS47445.1	r.?	-	-	intronic	41	0	0	39	6	15.4	20	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.614770459	0.614770459	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	4.43E-08	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	65566167	G	A	SPRED2	CCDS33211.1	r.?	-	-	intronic	13	0	0	27	8	29.6	5	2	40	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.773636727	1.773636727	1	4.30877193	4.30877193	1	NA	NA	1	NA	NA	1	4	NA	1	1	7.97E-13	1	0.000247509	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	65572895	C	T	-	-	-	-	-	-	41	0	0	50	6	12	22	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.599041916	0.599041916	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.000000206	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	65605967	C	A	-	-	-	-	-	-	50	0	0	43	4	9.3	41	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.557257485	0.557257485	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.000066	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	65641054	G	T	AC008267.2	ENST00000418858	r.?	-	-	intronic	17	0	0	54	16	29.6	29	5	17.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7	6	5	4	2	2	1	1	NA	NA	NA	NA	NA	NA	2.661636727	0.887212242	3	2.19677193	2.19677193	1	NA	NA	1	NA	NA	0	4	NA	1	1	2.69E-24	1	0.000000336	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	65659023	C	T	MAGI1	CCDS33781.1	r.?	-	-	intronic	72	0	0	53	5	9.4	40	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	0.502537985	0.502537985	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	0.00000734	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	129615475	G	T	-	-	-	-	-	-	46	0	0	38	13	34.2	41	1	2.4	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.707269461	0.853634731	2	0.225430105	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	5.88E-21	1	0.18577148	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	65680415	C	A	-	-	-	-	-	-	39	0	0	49	8	16.3	34	5	14.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.976698603	0.976698603	1	1.583473684	1.583473684	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.47E-10	1	0.000000771	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	65687196	C	A	MSRB3	CCDS31853.1	r.?	-	-	intronic	45	0	0	44	8	18.2	29	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.908546906	0.908546906	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	5.90E-11	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	65724916	A	T	-	-	-	-	-	-	44	0	0	39	13	33.3	26	1	3.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.329341317	1.329341317	1	0.333333333	0.333333333	1	NA	NA	1	NA	NA	1	4	NA	1	1	8.79E-21	1	0.122190858	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	136520130	C	A	KHDRBS3	CCDS6374.1	r.?	-	-	intronic	46	0	0	49	10	20.4	26	3	11.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.018371257	1.018371257	1	1.08018592	1.08018592	1	NA	NA	1	NA	NA	0	4	NA	1	1	6.72E-14	1	0.000298167	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	65764260	A	G	-	-	-	-	-	-	59	0	0	32	4	12.5	29	1	3.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.624001996	0.624001996	1	0.332245614	0.332245614	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.0000201	1	0.135292269	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	65770049	T	G	-	-	-	-	-	-	44	0	0	37	19	51.4	29	7	24.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	3.079896208	1.539948104	2	2.596035088	1.298017544	2	NA	NA	1	NA	NA	1	4	NA	1	1	3.09E-34	1	1.11E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	138957624	A	C	-	-	-	-	-	-	37	0	0	46	7	15.2	41	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0.758786427	0.758786427	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	3.53E-09	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	65833806	A	T	-	-	-	-	-	-	62	0	0	48	14	29.2	27	4	14.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.749668663	0.874834331	2	1.594245614	1.594245614	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.51E-21	1	0.00001	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	65846499	G	A	AC092373.1	ENST00000510964	r.?	-	-	intronic	62	0	0	46	18	39.1	31	4	12.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.342878244	1.171439122	2	1.389578947	1.389578947	1	NA	NA	1	NA	NA	1	4	NA	1	1	9.41E-30	1	0.0000177	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	65881195	A	T	-	-	-	-	-	-	36	0	0	51	18	35.3	33	7	21.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.762181637	0.881090818	2	2.071649123	1.035824561	2	NA	NA	1	NA	NA	1	4	NA	1	1	9.10E-29	1	2.98E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	65948656	C	T	-	-	-	-	-	-	55	0	0	34	7	20.6	23	3	13	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.234355289	1.234355289	1	1.400350877	1.400350877	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.73E-10	1	0.000205387	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	139560591	C	A	-	-	-	-	-	-	50	0	0	49	19	38.8	41	11	26.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.936902196	0.968451098	2	2.517302839	1.25865142	2	NA	NA	1	NA	NA	0	4	NA	1	1	3.12E-31	1	1.34E-16	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	65961663	G	A	AC008267.2	ENST00000418858	r.?	-	-	intronic	34	0	0	70	11	15.7	32	5	15.6	2	0	0	0	0	NA	0	0	NA	1	TRUE	FALSE	7	6	5	4	2	2	1	1	NA	NA	NA	NA	NA	NA	1.411746507	1.411746507	1	1.992421053	1.992421053	1	NA	NA	1	NA	NA	0	4	NA	1	1	8.06E-14	1	0.000000562	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	140429689	A	T	-	-	-	-	-	-	47	0	0	38	9	23.7	25	2	8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.183107784	1.183107784	1	0.751433683	0.751433683	1	NA	NA	1	NA	NA	0	4	NA	1	1	2.79E-13	1	0.006948068	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	65995163	C	A	MAGI1	CCDS33781.1	r.?	-	-	intronic	23	0	0	49	9	18.4	30	1	3.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	0.983691374	0.983691374	1	0.388473684	0.388473684	1	NA	NA	0	NA	NA	1	4	NA	1	1	3.35E-12	1	0.139615808	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	66129421	T	A	-	-	-	-	-	-	49	0	0	47	5	10.6	33	0	0	0	0	NA	0	0	NA	2	0	0	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.635153693	0.635153693	1	0	0	1	NA	NA	1	0	0	1	3	NA	1	1	0.00000402	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	66137919	T	A	-	-	-	-	-	-	50	0	0	53	8	15.1	32	2	6.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.904794411	0.904794411	1	0.667859649	0.667859649	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.83E-10	1	0.011224977	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	66143580	G	T	-	-	-	-	-	-	33	0	0	42	8	19	31	1	3.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.138483034	1.138483034	1	0.344701754	0.344701754	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.96E-11	1	0.143917729	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	66154957	T	A	-	-	-	-	-	-	37	0	0	38	16	42.1	36	10	27.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3.293619843	2	2	1	1	1	0.706380157	NA	3	NA	1	NA	0.293619843	2.101638723	1.050819361	2	2.798222808	1.220002877	2.293619843	NA	NA	1	NA	NA	0	4	NA	1	1	3.06E-27	1	2.21E-15	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	140643540	G	A	KCNK9	CCDS6377.1	r.?	-	-	intronic	16	0	0	44	13	29.5	30	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.472644711	1.472644711	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	5.49E-20	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	66188943	T	C	MAST4	CCDS47225.1	r.?	-	-	intronic	31	0	0	54	11	20.4	22	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.222371257	1.222371257	1	0	0	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.84E-15	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	66274298	G	A	-	-	-	-	-	-	41	0	0	39	18	46.2	31	3	9.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.844311377	0.922155689	2	0.850877193	0.850877193	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.15E-31	1	0.000505952	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	66301457	C	T	HMGA2	CCDS44936.1	r.?	-	-	intronic	58	0	0	48	16	33.3	38	7	18.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.662341317	0.831170659	2	1.798035088	1.798035088	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.96E-25	1	8.61E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	66311654	G	A	-	-	-	-	-	-	39	0	0	67	9	13.4	43	0	0	1	0	0	0	0	NA	0	0	NA	1	FALSE	FALSE	7	6	5	4	2	2	1	1	NA	NA	NA	NA	NA	NA	1.20493014	1.20493014	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	6.43E-11	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	66314374	T	G	-	-	-	-	-	-	76	1	1.3	61	14	23	41	2	4.9	0	0	NA	2	0	0	0	0	NA	1	TRUE	FALSE	4	4	3	3	1	1	1	1	NA	NA	NA	NA	NA	NA	1.378163673	1.378163673	1	0.527824561	0.527824561	1	0	0	1	NA	NA	1	4	NA	0.316790122	1	1.10E-19	1	0.018015855	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	66345529	C	T	HMGA2	CCDS44936.1	r.?	-	-	intronic	57	0	0	53	11	20.8	46	4	8.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.038339321	1.038339321	1	0.850157895	0.850157895	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.07E-15	1	0.0000862	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	66397802	A	G	MEGF11	CCDS10213.2	r.?	-	-	intronic	50	0	0	40	7	17.5	35	2	5.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3.293619843	2	2	1	1	1	0.706380157	NA	3	NA	1	NA	0.293619843	0.873602794	0.873602794	1	0.573736331	0.573736331	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.26E-09	1	0.013332991	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	66417329	T	A	EPHA5	CCDS3513.1	r.?	-	-	intronic	51	0	0	42	9	21.4	30	3	10	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.068291417	1.068291417	1	0.977192982	0.977192982	1	NA	NA	1	NA	NA	1	4	NA	1	1	7.51E-13	1	0.000458697	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	66466309	G	A	-	-	-	-	-	-	23	0	0	31	11	35.5	35	3	8.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.772165669	0.886082834	2	0.80779121	0.80779121	1	NA	NA	1	NA	NA	0	4	NA	1	1	3.77E-18	1	0.000725791	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	17	66484504	G	T	-	-	-	-	-	-	41	0	0	39	5	12.8	43	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.510978044	0.510978044	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.00000156	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	66526271	G	A	LRIG1	CCDS33783.1	r.?	-	-	intronic	39	0	0	48	17	35.4	32	6	18.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	1.892536665	0.946268333	2	2.213122807	1.106561404	2	NA	NA	0	NA	NA	1	4	NA	1	1	2.80E-27	1	1.27E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	66557910	G	T	MTFR1	CCDS6182.1	r.?	-	-	intronic	12	0	0	19	5	26.3	22	3	13.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.3129002	1.3129002	1	1.277437262	1.277437262	1	NA	NA	1	NA	NA	0	4	NA	1	1	3.43E-08	1	0.000179267	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	141684836	C	A	PTK2	CCDS6381.1	r.?	-	-	intronic	31	0	0	36	5	13.9	31	7	22.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5	2.620991218	3	2	2	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0.97189022	0.97189022	1	2.122800156	1.061400078	2	NA	NA	1	NA	NA	0	4	NA	1	1	0.00000104	1	1.85E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	66582918	T	C	-	-	-	-	-	-	48	0	0	143	7	4.9	48	2	4.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5	4	5	4	0	0	1	1	NA	NA	NA	NA	NA	NA	0.342608782	0.342608782	1	0.452421053	0.452421053	1	NA	NA	1	NA	NA	0	4	NA	1	1	0.00000902	1	0.024220359	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	143016226	C	T	-	-	-	-	-	-	13	0	0	28	8	28.6	19	2	10.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5	2.620991218	3	2	2	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.999716567	0.999858283	2	0.986256709	0.986256709	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.11E-12	1	0.004039874	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	66602287	A	G	-	-	-	-	-	-	47	0	0	57	5	8.8	42	0	0	1	0	0	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	0.470461092	1.328487752	0.354132803	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	0.0000105	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	66639816	G	A	PDE7A	CCDS34901.1	r.?	-	-	intronic	60	0	0	48	8	16.7	36	5	13.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0.833666667	0.833666667	1	1.305616025	1.305616025	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.23E-10	1	0.00000104	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	3869422	G	A	GLIS3	CCDS6451.1	r.?	-	-	intronic	41	0	0	19	5	26.3	17	3	17.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1	1	1	1	0	0	1	1	NA	NA	NA	NA	NA	NA	0.7869002	0.7869002	1	1.367859649	1.367859649	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.43E-08	1	0.0000807	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	66696785	C	A	-	-	-	-	-	-	57	0	0	60	11	18.3	52	6	11.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.297222263	4	2	2	2	2	0.702777737	1	3	NA	2	NA	0.297222263	NA	1.150930596	1.150930596	1	1.23877193	1.23877193	1	NA	NA	0	NA	NA	0	4	NA	1	1	1.34E-14	1	0.000000261	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	66714807	C	T	PDE7A	CCDS43743.1	r.?	-	-	intronic	41	0	0	43	11	25.6	37	4	10.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.277956088	1.277956088	1	1.014435473	1.014435473	1	NA	NA	1	NA	NA	0	4	NA	1	1	2.42E-16	1	0.0000362	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	66779602	G	A	-	-	-	-	-	-	36	0	0	35	17	48.6	44	15	34.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	2.42611976	1.21305988	2	3.202986075	1.601493038	2	NA	NA	1	NA	NA	0	4	NA	1	1	3.18E-30	1	6.12E-24	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	66805677	C	T	-	-	-	-	-	-	52	0	0	49	16	32.7	32	5	15.6	1	0	0	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.959389222	0.979694611	2	1.680421053	1.680421053	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.37E-25	1	0.000000562	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	66842549	C	A	RHOD	CCDS8155.1	r.?	-	-	downstream	32	0	0	38	7	18.4	26	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.918530938	0.918530938	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	8.61E-10	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	66881412	G	A	PCDH9	CCDS9443.1	r.?	-	-	intronic	49	0	0	39	6	15.4	33	1	3	0	0	NA	1	0	0	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.922770459	0.922770459	1	0.323157895	0.323157895	1	0	0	1	NA	NA	1	4	NA	1	1	4.43E-08	1	0.15245715	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	66964641	G	A	-	-	-	-	-	-	42	0	0	38	6	15.8	25	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.788738523	0.788738523	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	3.76E-08	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	23426874	C	G	IGF2BP3	CCDS5382.1	r.?	-	-	intronic	43	0	0	93	33	35.5	51	11	21.6	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	NA	8.289880778	NA	6	NA	2	NA	0.710119222	NA	6	NA	3	NA	0.289880778	NA	NA	1	3.25335109	1.084450363	3	NA	NA	1	NA	NA	0	NA	NA	1	1	1.39E-51	1	1.94E-15	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	66987426	A	C	-	-	-	-	-	-	42	0	0	34	19	55.9	29	8	27.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.231536926	1.115768463	2	2.421052632	1.210526316	2	NA	NA	1	NA	NA	1	4	NA	1	1	3.30E-35	1	1.53E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	66996867	A	T	PCDH9	CCDS9443.1	r.?	-	-	intronic	48	0	0	51	20	39.2	22	1	4.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.348870259	1.17443513	2	0.484736842	0.484736842	1	NA	NA	1	NA	NA	1	4	NA	1	1	6.38E-33	1	0.104413009	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	66999048	C	T	GRIP1	CCDS41807.1	r.?	-	-	intronic	58	0	0	42	14	33.3	36	12	33.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.662341317	0.831170659	2	3.254052632	1.627026316	2	NA	NA	1	NA	NA	1	4	NA	1	1	2.83E-22	1	2.73E-19	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	67019037	G	C	-	-	-	-	-	-	29	0	0	59	15	25.4	46	6	13	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7	6	5	4	2	2	1	1	NA	NA	NA	NA	NA	NA	2.283972056	1.141986028	2	1.660350877	1.660350877	1	NA	NA	1	NA	NA	0	4	NA	1	1	9.90E-22	1	0.000000123	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	67051932	G	T	-	-	-	-	-	-	50	0	0	61	20	32.8	42	5	11.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.965381238	0.982690619	2	1.281859649	1.281859649	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.89E-31	1	0.00000228	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	67056621	T	A	-	-	-	-	-	-	32	0	0	42	16	38.1	23	4	17.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.901958084	0.950979042	2	1.700315789	1.700315789	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.25E-26	1	0.00000513	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	67078434	G	A	-	-	-	-	-	-	40	0	0	44	5	11.4	27	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.56908982	0.56908982	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.00000288	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	7588910	A	G	-	-	-	-	-	-	57	0	0	28	9	32.1	35	5	14.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1	1	1	1	0	0	1	1	NA	NA	NA	NA	NA	NA	0.960437126	0.960437126	1	1.111385965	1.111385965	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.24E-14	1	0.000000895	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	67116125	T	C	-	-	-	-	-	-	64	0	0	75	23	30.7	49	11	22.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7	6	5	4	2	2	1	1	NA	NA	NA	NA	NA	NA	2.760548902	0.920182967	3	2.860912281	0.953637427	3	NA	NA	1	NA	NA	0	4	NA	1	1	1.10E-34	1	1.19E-15	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	67172676	G	C	DOK6	CCDS32841.1	r.?	-	-	intronic	38	0	0	27	14	51.9	32	6	18.8	0	0	NA	1	0	0	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.071856287	1.035928144	2	1.649122807	1.649122807	1	0	0	1	NA	NA	1	4	NA	1	1	1.15E-25	1	1.27E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	67175862	C	G	TBC1D10C	CCDS8162.1	r.?	-	-	intronic	19	0	0	56	9	16.1	26	3	11.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.803714571	0.803714571	1	1.12377193	1.12377193	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.20E-11	1	0.000298167	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	17	67177070	G	A	ABCA10	CCDS11684.1	r.?	-	-	intronic	57	0	0	38	9	23.7	28	4	14.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.946107784	0.946107784	1	1.254385965	1.254385965	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.79E-13	1	0.0000116	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	67180569	C	A	SGIP1	CCDS30744.1	r.?	-	-	intronic	47	0	0	47	20	42.6	26	7	26.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	2.126598802	1.063299401	2	3.166649123	1.055549708	3	NA	NA	0	NA	NA	1	4	NA	1	1	8.18E-34	1	4.73E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	67233831	G	A	-	-	-	-	-	-	26	0	0	68	33	48.5	37	11	29.7	0	0	NA	1	0	0	0	0	NA	1	TRUE	FALSE	7	6	5	4	2	2	1	1	NA	NA	NA	NA	NA	NA	4.361127745	1.090281936	4	3.793263158	0.948315789	4	0	0	1	NA	NA	0	4	NA	1	1	2.71E-57	1	3.70E-17	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	67315597	A	C	-	-	-	-	-	-	48	0	0	76	11	14.5	46	4	8.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7	6	5	4	2	2	1	1	NA	NA	NA	NA	NA	NA	1.303842315	1.303842315	1	1.111157895	1.111157895	1	NA	NA	1	NA	NA	0	4	NA	1	1	2.08E-13	1	0.0000862	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	67315599	A	T	-	-	-	-	-	-	47	0	0	75	11	14.7	47	4	8.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7	6	5	4	2	2	1	1	NA	NA	NA	NA	NA	NA	1.321826347	1.321826347	1	1.085614035	1.085614035	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.78E-13	1	0.0000939	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	67327270	A	G	AC009879.1	ENST00000499642	r.?	-	-	downstream	56	0	0	50	13	26	43	6	14	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.297924152	1.297924152	1	1.315008946	1.315008946	1	NA	NA	1	NA	NA	0	4	NA	1	1	3.65E-19	1	8.13E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	67348201	C	T	PCDH9	CCDS9443.1	r.?	-	-	intronic	45	0	0	49	12	24.5	37	11	29.7	6	0	0	6	2	33.3	2	0	0	1	TRUE	TRUE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.468043912	1.468043912	1	3.199263158	1.599631579	2	1.995341317	1.995341317	1	0	0	1	4	3	1	1	1.90E-17	0.000370028	3.70E-17	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	7695887	G	T	-	-	-	-	-	-	53	0	0	23	10	43.5	29	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1	1	1	1	0	0	1	1	NA	NA	NA	NA	NA	NA	1.301526946	1.301526946	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	1.05E-17	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	16763146	A	G	BNC2	CCDS6482.2	r.?	-	-	intronic	44	0	0	25	13	52	27	1	3.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1	1	1	1	0	0	1	1	NA	NA	NA	NA	NA	NA	1.555848303	1.555848303	1	0.287561404	0.287561404	1	NA	NA	1	NA	NA	1	4	NA	1	1	6.00E-24	1	0.126579904	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	67366235	C	A	DOK6	CCDS32841.1	r.?	-	-	intronic	51	0	0	39	5	12.8	30	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.510978044	0.510978044	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.00000156	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	67390267	A	G	WDR78	CCDS635.1	r.?	-	-	intronic	11	0	0	42	17	40.5	27	9	33.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	2.021766467	1.010883234	2	3.920052632	1.306684211	3	NA	NA	0	NA	NA	1	4	NA	1	1	1.73E-28	1	8.44E-15	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	67426201	G	T	DOK6	CCDS32841.1	r.?	-	-	intronic	56	0	0	29	13	44.8	40	11	27.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.788423154	0.894211577	2	2.412280702	1.206140351	2	NA	NA	1	NA	NA	1	4	NA	1	1	7.69E-23	1	9.88E-17	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	67507016	G	T	SLC35D1	CCDS636.1	r.?	-	-	intronic	37	0	0	35	5	14.3	23	1	4.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	0.713858283	0.713858283	1	0.506192982	0.506192982	1	NA	NA	0	NA	NA	1	4	NA	1	1	0.000000895	1	0.108890944	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	17	67566997	G	A	-	-	-	-	-	-	44	0	0	29	16	55.2	24	4	16.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.203592814	1.101796407	2	1.464912281	1.464912281	1	NA	NA	1	NA	NA	1	4	NA	1	1	9.74E-30	1	0.00000613	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	67572603	G	T	-	-	-	-	-	-	56	0	0	35	10	28.6	36	5	13.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.427716567	1.427716567	1	1.358298246	1.358298246	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.60E-15	1	0.00000104	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	67594327	T	C	-	-	-	-	-	-	44	0	0	46	17	37	36	8	22.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.847045908	0.923522954	2	2.169368421	1.084684211	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.16E-27	1	1.04E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	67601481	C	A	-	-	-	-	-	-	43	0	0	44	18	40.9	37	8	21.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.297222263	4	2	2	2	2	0.702777737	1	3	NA	2	NA	0.297222263	NA	2.572298437	1.119742951	2.297222263	2.326736842	1.163368421	2	NA	NA	1	NA	NA	0	4	NA	1	1	3.47E-30	1	1.33E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	67632877	C	T	PCDH9	CCDS9443.1	r.?	-	-	intronic	58	0	0	41	15	36.6	23	1	4.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.193077844	1.096538922	2	0.463192982	0.463192982	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.71E-24	1	0.108890944	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	67646344	G	C	SUCLG2	CCDS43104.1	r.?	-	-	intronic	44	0	0	40	10	25	43	8	18.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	1.336537193	1.336537193	1	2.189578947	1.094789474	2	NA	NA	0	NA	NA	1	4	NA	1	1	7.22E-15	1	4.85E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	67716254	T	A	-	-	-	-	-	-	35	0	0	45	7	15.6	23	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	0.833999208	0.833999208	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	0.000000003	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	24842097	G	A	-	-	-	-	-	-	42	0	0	22	7	31.8	22	2	9.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1	1	1	1	0	0	1	1	NA	NA	NA	NA	NA	NA	0.951461078	0.951461078	1	0.707245614	0.707245614	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.25E-11	1	0.005403392	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	67748855	C	G	GFOD2	CCDS10845.1	r.?	-	-	intronic	56	0	0	52	23	44.2	50	8	16	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	5.626372055	2	3	2	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	2.648471058	1.324235529	2	1.983728301	0.99186415	2	NA	NA	0	NA	NA	1	4	NA	1	1	3.66E-39	1	1.74E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	67754933	T	C	-	-	-	-	-	-	42	0	0	42	13	31	34	6	17.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.54752495	1.54752495	1	1.719859649	1.719859649	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.72E-20	1	1.86E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	67759509	G	T	PCDH9	CCDS9443.1	r.?	-	-	intronic	55	0	0	47	14	29.8	35	4	11.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.785620758	0.892810379	2	1.228	1.228	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.79E-21	1	0.0000289	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	67775376	G	A	-	-	-	-	-	-	54	0	0	68	26	38.2	41	3	7.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7	6	5	4	2	2	1	1	NA	NA	NA	NA	NA	NA	3.4349501	0.858737525	4	0.932350877	0.932350877	1	NA	NA	1	NA	NA	0	4	NA	1	1	5.33E-42	1	0.001155993	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	67869967	C	T	-	-	-	-	-	-	40	0	0	76	16	21.1	33	5	15.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7	6	5	4	2	2	1	1	NA	NA	NA	NA	NA	NA	1.897315369	0.948657685	2	1.941333333	1.941333333	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.25E-21	1	0.00000066	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	67874659	A	T	-	-	-	-	-	-	56	0	0	43	12	27.9	41	3	7.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	1.491575507	1.491575507	1	0.859350877	0.859350877	1	NA	NA	0	NA	NA	1	4	NA	1	1	3.24E-18	1	0.001155993	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	67934157	A	C	-	-	-	-	-	-	42	0	0	44	8	18.2	34	1	2.9	0	0	NA	0	0	NA	2	0	0	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.090546906	1.090546906	1	0.312385965	0.312385965	1	NA	NA	1	0	0	1	4	NA	1	1	5.90E-11	1	0.156694864	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	67940634	G	C	PSKH1	CCDS10851.1	r.?	-	-	intronic	26	0	0	65	5	7.7	38	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	5.626372055	2	3	2	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	0.46138523	0.46138523	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	0.0000201	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	67941505	G	T	STARD8	CCDS48134.1	r.2590g>u	c.2376G>T	p.Q792H	missense	22	0	0	27	8	29.6	19	5	26.3	265	0	0	18	5	27.8	29	15	51.7	6.80E-23	TRUE	TRUE	3	2.566189755	2	1	1	1	1	0.433810245	NA	2	NA	1	NA	0.566189755	1.477636727	1.477636727	1	2.455925449	1.568089334	1.566189755	1.387780439	1.387780439	1	4.827807822	3.082517817	1.566189755	4	3	1	1	7.97E-13	2.54E-08	3.43E-08	2.22E-27	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	67943499	C	T	-	-	-	-	-	-	47	0	0	26	15	57.7	22	6	27.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.303393214	1.151696607	2	2.394736842	1.197368421	2	NA	NA	1	NA	NA	1	4	NA	1	1	2.24E-28	1	1.09E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	67987679	G	A	-	-	-	-	-	-	55	0	0	56	6	10.7	42	1	2.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.641145709	0.641145709	1	0.258526316	0.258526316	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.000000409	1	0.189842622	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	67990691	C	A	-	-	-	-	-	-	26	0	0	40	10	25	37	6	16.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.498003992	1.498003992	1	1.745052632	1.745052632	1	NA	NA	1	NA	NA	1	4	NA	1	1	7.22E-15	1	3.18E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	68068987	A	T	-	-	-	-	-	-	55	0	0	43	14	32.6	42	8	19	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.953397206	0.976698603	2	2.046666667	1.023333333	2	NA	NA	1	NA	NA	1	4	NA	1	1	4.18E-22	1	3.96E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	68078758	G	A	-	-	-	-	-	-	43	0	0	44	12	27.3	39	8	20.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.362820359	1.362820359	1	2.003245614	1.001622807	2	NA	NA	1	NA	NA	1	4	NA	1	1	4.44E-18	1	2.09E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	68095622	G	C	LRP5	CCDS8181.1	r.?	-	-	intronic	25	0	0	30	7	23.3	19	3	15.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.163139721	1.163139721	1	1.543964912	1.543964912	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.44E-10	1	0.000114071	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	68112743	T	A	-	-	-	-	-	-	70	0	0	33	9	27.3	36	5	13.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.089820359	1.089820359	1	1.219298246	1.219298246	1	NA	NA	1	NA	NA	1	4	NA	1	1	6.76E-14	1	0.00000104	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	68137225	G	A	LRP5	CCDS8181.1	r.?	-	-	intronic	15	0	0	31	20	64.5	18	5	27.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	3.219850299	1.60992515	2	2.716596491	1.358298246	2	NA	NA	1	NA	NA	1	4	NA	1	1	7.66E-39	1	2.54E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	68140966	T	C	-	-	-	-	-	-	57	0	0	76	48	63.2	34	13	38.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7	6	5	4	2	2	1	1	NA	NA	NA	NA	NA	NA	5.682954092	1.136590818	5	4.878877193	1.219719298	4	NA	NA	1	NA	NA	0	4	NA	1	1	1.54E-90	1	1.03E-21	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	26142754	G	T	-	-	-	-	-	-	53	0	0	18	9	50	17	3	17.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1	1	1	1	0	0	1	1	NA	NA	NA	NA	NA	NA	1.496007984	1.496007984	1	1.367859649	1.367859649	1	NA	NA	1	NA	NA	1	4	NA	1	1	9.12E-17	1	0.0000807	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	68187676	A	C	-	-	-	-	-	-	47	0	0	32	11	34.4	28	3	10.7	0	0	NA	0	0	NA	1	1	100	0.01	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.717253493	0.858626747	2	1.045596491	1.045596491	1	NA	NA	1	9.771929825	9.771929825	1	4	NA	1	1	5.72E-18	1	0.000372895	0.005	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	68256782	G	A	CTNNA3	CCDS7269.1	r.?	-	-	intronic	49	0	0	52	18	34.6	28	4	14.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.297222263	4	2	2	2	2	0.702777737	1	3	NA	2	NA	0.297222263	NA	2.176076428	0.947264208	2.297222263	1.540385965	1.540385965	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.39E-28	1	0.0000116	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	68260497	G	T	NFATC3	CCDS10860.1	r.3375g>u	c.?	p.?	3'UTR variant	53	0	0	79	17	21.5	45	12	26.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	9	5.626372055	6	3	3	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	2.363283433	1.181641717	2	3.310346602	1.103448867	3	NA	NA	1	NA	NA	0	4	NA	1	1	4.55E-23	1	6.03E-18	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	33575061	A	G	ANKRD18B	ENST00000290943	r.?	-	-	downstream	29	0	0	30	11	36.7	16	2	12.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.422406675	3.327893332	2	3	0	0	0.577593325	0.672106668	3	3	0	1	0.422406675	0.327893332	1.62009311	1.62009311	1	1.262477895	1.262477895	1	NA	NA	0	NA	NA	0	4	NA	1	1	2.44E-18	1	0.002863359	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	68290491	G	T	-	-	-	-	-	-	42	0	0	44	11	25	30	2	6.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.248003992	1.248003992	1	0.654719298	0.654719298	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.22E-16	1	0.009909649	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	35153713	G	T	-	-	-	-	-	-	41	0	0	56	9	16.1	36	1	2.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.133128081	5	2	3	1	2	0.866871919	1	2	NA	2	NA	0.133128081	NA	0.825148192	0.825148192	1	0.329614035	0.329614035	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.20E-11	1	0.165106833	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	68300486	T	C	-	-	-	-	-	-	45	0	0	51	14	27.5	34	3	8.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.647804391	0.823902196	2	0.947929825	0.947929825	1	NA	NA	1	NA	NA	1	4	NA	1	1	6.64E-21	1	0.000666058	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	68305031	C	G	-	-	-	-	-	-	51	0	0	38	12	31.6	38	9	23.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.893477046	0.946738523	2	2.552947368	1.276473684	2	NA	NA	1	NA	NA	1	4	NA	1	1	5.86E-19	1	2.79E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	68305125	A	T	SAPS3	CCDS8182.1	r.354-2a>u	c.?	p.?	5'UTR ess splice	47	0	0	31	14	45.2	34	11	32.4	98	0	0	129	51	39.5	157	41	26.1	3.31E-45	TRUE	TRUE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	2.256391218	1.128195609	2	3.166105263	1.583052632	2	1.971846307	0.985923154	2	2.550473684	1.275236842	2	4	3	1	1	1.49E-24	8.57E-82	1.26E-17	2.66E-57	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	10	68330222	T	G	CTNNA3	CCDS7269.1	r.?	-	-	intronic	37	0	0	48	14	29.2	32	3	9.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.297222263	4	2	2	2	2	0.702777737	1	3	NA	2	NA	0.297222263	NA	1.836457563	0.918228782	2	1.012561404	1.012561404	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.51E-21	1	0.000556213	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	68339976	G	C	FAM19A1	ENST00000478136	r.?	-	-	intronic	60	0	0	40	21	52.5	44	13	29.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	2.806728105	1.403364053	2	3.472719298	1.157573099	3	NA	NA	0	NA	NA	1	4	NA	1	1	5.72E-38	1	5.49E-20	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	68366312	T	G	-	-	-	-	-	-	265	0	0	232	14	6	178	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	0.239520958	0.239520958	1	0	0	1	NA	NA	0	NA	NA	1	2	NA	1	1	2.22E-11	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	68369931	A	G	-	-	-	-	-	-	21	0	0	70	12	17.1	33	4	12.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7	6	5	4	2	2	1	1	NA	NA	NA	NA	NA	NA	1.537634731	1.537634731	1	1.545403509	1.545403509	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.99E-15	1	0.0000228	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	68395705	C	T	RAD51L1	CCDS9789.1	r.?	-	-	intronic	36	0	0	30	17	56.7	28	9	32.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	3	2	3	0	0	1	1	NA	NA	NA	NA	NA	NA	2.263473054	1.131736527	2	3.136789474	1.045596491	3	NA	NA	0	NA	NA	1	4	NA	1	1	8.59E-32	1	1.24E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	68468338	C	T	-	-	-	-	-	-	51	0	0	76	42	55.3	41	15	36.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7	6	5	4	2	2	1	1	NA	NA	NA	NA	NA	NA	4.97258483	0.994516966	5	4.674526316	1.168631579	4	NA	NA	1	NA	NA	0	4	NA	1	1	8.75E-76	1	1.71E-24	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	68471322	T	C	FAM19A1	ENST00000478136	r.?	-	-	intronic	44	0	0	53	21	39.6	29	5	17.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	2.117074913	1.058537457	2	2.02477193	2.02477193	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.30E-34	1	0.000000336	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	68472501	T	C	-	-	-	-	-	-	44	0	0	32	13	40.6	29	10	34.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.566189755	2	1	1	1	1	0.433810245	NA	2	NA	1	NA	0.566189755	2.026758483	1.013379242	2	3.221651255	2.056999317	1.566189755	NA	NA	1	NA	NA	0	4	NA	1	1	3.88E-22	1	1.79E-16	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	17	68482358	A	G	-	-	-	-	-	-	39	0	0	30	4	13.3	27	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.530938124	0.530938124	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.0000154	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	68524520	G	C	-	-	-	-	-	-	43	0	0	55	4	7.3	37	2	5.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7	6	5	4	2	2	1	1	NA	NA	NA	NA	NA	NA	0.656417166	0.656417166	1	0.689684211	0.689684211	1	NA	NA	1	NA	NA	0	4	NA	1	1	0.000173903	1	0.014826063	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	68548648	C	A	-	-	-	-	-	-	32	0	0	54	17	31.5	29	3	10.3	211	2	0.9	89	27	30.3	236	10	4.2	0.000157616	TRUE	TRUE	9	5.626372055	6	3	3	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	3.46248503	0.865621257	4	1.277025094	1.277025094	1	3.330580838	1.110193613	3	0.520728679	0.831340853	0.626372055	4	3	1	0.284514532	3.02E-26	2.66E-40	0.000414371	0.000000427	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	1	68586682	T	C	WLS	CCDS642.1	r.?	-	-	downstream	51	0	0	41	8	19.5	24	1	4.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	0.973443114	0.973443114	1	0.494421053	0.494421053	1	NA	NA	0	NA	NA	1	4	NA	1	1	3.22E-11	1	0.113346489	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	36939433	G	T	PAX5	CCDS6607.1	r.?	-	-	intronic	25	0	0	43	9	20.9	32	1	3.1	260	1	0.4	120	30	25	129	5	3.9	0.00991306	TRUE	TRUE	3.133128081	5	2	3	1	2	0.866871919	1	2	NA	2	NA	0.133128081	NA	1.071155106	1.071155106	1	0.364929825	0.364929825	1	1.281286012	1.281286012	1	0.459105263	0.459105263	1	4	3	1	0.728355451	9.45E-13	1.02E-41	0.14819814	0.000514532	YES	1_1	0_1	somatic	custom.pulldown.HiSeq
PD9852b	13	68662568	A	T	-	-	-	-	-	-	64	0	0	60	8	13.3	40	1	2.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.796938124	0.796938124	1	0.269298246	0.269298246	1	NA	NA	1	NA	NA	1	4	NA	1	1	7.93E-10	1	0.181679879	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	68688181	A	C	-	-	-	-	-	-	55	0	0	34	7	20.6	27	4	14.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.822355289	0.822355289	1	1.298245614	1.298245614	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.73E-10	1	0.00001	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	68707044	T	G	LRRTM3	CCDS7270.1	r.?	-	-	intronic	58	0	0	56	4	7.1	38	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.297222263	4	2	2	2	2	0.702777737	1	3	NA	2	NA	0.297222263	NA	0.446535914	0.446535914	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.000186538	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	68742817	C	T	-	-	-	-	-	-	65	0	0	21	8	38.1	40	5	12.5	0	0	NA	0	0	NA	1	0	0	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.520958084	1.520958084	1	1.096491228	1.096491228	1	NA	NA	1	0	0	1	4	NA	1	1	7.50E-14	1	0.00000178	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	68766138	G	T	-	-	-	-	-	-	47	0	0	34	16	47.1	28	7	25	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.880239521	0.94011976	2	2.192982456	1.096491228	2	NA	NA	1	NA	NA	1	4	NA	1	1	3.09E-28	1	8.44E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	68782144	G	A	-	-	-	-	-	-	46	0	0	63	8	12.7	38	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	7	6	5	4	2	2	1	1	NA	NA	NA	NA	NA	NA	1.141986028	1.141986028	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	1.18E-09	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	68798358	C	A	-	-	-	-	-	-	19	0	0	29	10	34.5	10	1	10	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.377245509	1.377245509	1	0.877192982	0.877192982	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.79E-16	1	0.04888987	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	68807157	G	A	OCLN	CCDS4006.1	r.?	-	-	intronic	23	0	0	58	14	24.1	34	0	0	1	0	0	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.444075848	1.444075848	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	5.04E-20	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	68823365	A	G	PROKR1	CCDS1889.1	r.?	-	-	intronic	45	0	0	50	20	40	22	2	9.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.396806387	1.198403194	2	0.980245614	0.980245614	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.90E-33	1	0.005403392	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	68857757	C	G	-	-	-	-	-	-	37	0	0	30	8	26.7	29	1	3.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3.293619843	2	2	1	1	1	0.706380157	NA	3	NA	1	NA	0.293619843	1.332868263	1.332868263	1	0.342228689	0.342228689	1	NA	NA	1	NA	NA	0	4	NA	1	1	2.07E-12	1	0.135292269	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	68897571	G	A	-	-	-	-	-	-	32	0	0	35	9	25.7	30	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.282948104	1.282948104	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	1.23E-13	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	38686890	G	A	-	-	-	-	-	-	15	0	0	26	11	42.3	16	4	25	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.133128081	4	2	3	1	1	0.866871919	1	2	NA	2	NA	0.133128081	NA	2.167935933	1.083967966	2	2.692982456	0.897660819	3	NA	NA	0	NA	NA	0	4	NA	1	1	3.52E-19	1	0.00000108	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	68975910	G	A	-	-	-	-	-	-	56	0	0	34	17	50	29	6	20.7	0	0	NA	1	0	0	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.996007984	0.998003992	2	1.815789474	1.815789474	1	0	0	1	NA	NA	1	4	NA	1	1	1.64E-30	1	6.72E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	69037112	G	A	-	-	-	-	-	-	48	0	0	23	12	52.2	45	13	28.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.083832335	1.041916168	2	2.535087719	1.26754386	2	NA	NA	1	NA	NA	1	4	NA	1	1	3.14E-22	1	7.68E-20	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	69042625	C	G	ARHGAP25	CCDS46312.1	r.?	-	-	intronic	29	0	0	37	13	35.1	22	7	31.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.103197605	1.051598802	2	3.425473684	1.712736842	2	NA	NA	1	NA	NA	1	4	NA	1	1	3.89E-21	1	1.25E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	69063369	G	A	PREX2	CCDS6201.1	r.?	-	-	intronic	44	0	0	39	12	30.8	33	9	27.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.537540918	1.537540918	1	2.564267445	1.282133722	2	NA	NA	1	NA	NA	0	4	NA	1	1	8.43E-19	1	6.76E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	17	69067327	A	G	-	-	-	-	-	-	49	0	0	27	10	37	28	2	7.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.477045908	1.477045908	1	0.622807018	0.622807018	1	NA	NA	1	NA	NA	1	4	NA	1	1	7.62E-17	1	0.008668191	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	69129501	G	A	NUP107	CCDS8985.1	r.?	-	-	intronic	46	0	0	35	6	17.1	33	5	15.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.853634731	0.853634731	1	1.485333333	1.485333333	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.24E-08	1	0.00000066	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	69182585	T	A	AUTS2	CCDS5539.1	r.?	-	-	intronic	54	0	0	107	21	19.6	45	3	6.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7	6	5	4	2	2	1	1	NA	NA	NA	NA	NA	NA	1.76243513	0.881217565	2	0.855719298	0.855719298	1	NA	NA	1	NA	NA	0	4	NA	1	1	3.13E-27	1	0.001516071	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	69197012	G	A	RAD51L1	ENST00000488612	r.?	-	-	downstream	41	0	0	41	30	73.2	30	17	56.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	3	2	3	0	0	1	1	NA	NA	NA	NA	NA	NA	2.922155689	1.461077844	2	5.540684211	1.846894737	3	NA	NA	0	NA	NA	1	4	NA	1	1	2.79E-60	1	8.59E-32	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	69201469	G	A	MDM2	CCDS8986.2	r.?	-	-	upstream	24	0	0	48	10	20.8	19	1	5.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.038339321	1.038339321	1	0.517912281	0.517912281	1	NA	NA	1	NA	NA	1	4	NA	1	1	5.37E-14	1	0.090843738	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	69324443	A	T	C8orf34	ENST00000348340	r.?	-	-	intronic	49	0	0	41	18	43.9	35	9	25.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	2.19149501	1.095747505	2	2.413980708	1.206990354	2	NA	NA	1	NA	NA	0	4	NA	1	1	6.91E-31	1	1.23E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	69374955	T	C	-	-	-	-	-	-	43	0	0	35	11	31.4	32	7	21.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	1.567493014	1.567493014	1	1.989690172	1.514900129	1.313413428	NA	NA	1	NA	NA	0	4	NA	1	1	1.82E-17	1	2.36E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	69394023	C	T	-	-	-	-	-	-	51	0	0	50	20	40	35	6	17.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.396806387	1.198403194	2	1.842	1.842	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.90E-33	1	2.24E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	69461876	A	C	AUTS2	CCDS5539.1	r.?	-	-	intronic	55	0	0	68	12	17.6	50	10	20	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7	6	5	4	2	2	1	1	NA	NA	NA	NA	NA	NA	1.58259481	1.58259481	1	2.554385965	0.851461988	3	NA	NA	1	NA	NA	0	4	NA	1	1	1.37E-15	1	8.36E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	69493389	T	G	CYB5B	CCDS10880.2	r.?	-	-	intronic	54	0	0	42	13	31	36	14	38.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	5.626372055	2	3	2	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	1.85752495	0.928762475	2	4.822939431	1.607646477	3	NA	NA	0	NA	NA	0	4	NA	1	1	2.72E-20	1	2.09E-23	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	69505599	G	C	C8orf34	CCDS6203.1	r.?	-	-	intronic	55	0	0	52	21	40.4	35	7	20	0	0	NA	0	0	NA	1	0	0	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	2.016774451	1.008387226	2	1.878584208	1.878584208	1	NA	NA	1	0	NA	0	4	NA	1	1	7.89E-35	1	4.65E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	69543804	T	A	GLCE	CCDS32277.1	r.?	-	-	intronic	49	0	0	46	21	45.7	30	8	26.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3.293619843	2	2	1	1	1	0.706380157	NA	3	NA	1	NA	0.293619843	2.281351297	1.140675649	2	2.687501761	1.171729382	2.293619843	NA	NA	1	NA	NA	0	4	NA	1	1	2.94E-36	1	2.07E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	17	69550831	G	T	-	-	-	-	-	-	42	0	0	33	7	21.2	23	1	4.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.846307385	0.846307385	1	0.377192982	0.377192982	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.98E-10	1	0.108890944	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	69569190	C	A	-	-	-	-	-	-	65	0	0	65	25	38.5	52	12	23.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.306926148	1.153463074	2	2.488315789	1.244157895	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.60E-40	1	4.19E-17	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	69816874	C	T	-	-	-	-	-	-	82	0	0	59	8	13.6	64	2	3.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	0.542914172	0.542914172	1	0.333929825	0.333929825	1	NA	NA	0	NA	NA	1	4	NA	1	1	6.90E-10	1	0.041085601	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	69675879	T	A	-	-	-	-	-	-	66	1	1.5	51	12	23.5	27	4	14.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.408123752	1.408123752	1	1.594245614	1.594245614	1	NA	NA	1	NA	NA	1	4	NA	0.281671117	1	3.24E-17	1	0.00001	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	69761743	C	G	-	-	-	-	-	-	27	0	0	38	9	23.7	28	5	17.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3.293619843	2	2	1	1	1	0.706380157	NA	3	NA	1	NA	0.293619843	1.183107784	1.183107784	1	1.80173339	1.80173339	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.79E-13	1	0.000000279	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	69777477	G	T	-	-	-	-	-	-	64	0	0	41	9	22	33	5	15.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	1.17615273	1.17615273	1	1.789333333	1.789333333	1	NA	NA	0	NA	NA	1	4	NA	1	1	5.92E-13	1	0.00000066	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	69778713	G	C	-	-	-	-	-	-	50	0	0	32	10	31.2	24	3	12.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	1.557508982	1.557508982	1	1.135667907	1.135667907	1	NA	NA	1	NA	NA	0	4	NA	1	1	5.70E-16	1	0.000233853	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	69780176	G	A	-	-	-	-	-	-	33	0	0	41	13	31.7	23	3	13	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.582469062	0.791234531	2	1.530350877	1.530350877	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.89E-20	1	0.000205387	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	69801289	G	A	-	-	-	-	-	-	43	0	0	45	9	20	34	1	2.9	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0.998403194	0.998403194	1	0.27239471	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	1.47E-12	1	0.156694864	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	86273929	G	C	UBQLN1	CCDS6663.1	r.?	-	-	downstream	43	0	0	38	12	31.6	32	8	25	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	1.261477046	1.261477046	1	2.692982456	0.897660819	3	NA	NA	0	NA	NA	1	4	NA	1	1	5.86E-19	1	3.69E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	69860790	C	G	WWP2	CCDS10885.1	r.?	-	-	intronic	21	0	0	26	8	30.8	29	6	20.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	5.626372055	2	3	2	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	1.845540918	0.922770459	2	2.566448489	1.081234527	2.373627945	NA	NA	0	NA	NA	0	4	NA	1	1	5.63E-13	1	6.72E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	69867396	G	C	AUTS2	CCDS5539.1	r.?	-	-	intronic	37	0	0	81	13	16	41	3	7.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7	6	5	4	2	2	1	1	NA	NA	NA	NA	NA	NA	1.438722555	1.438722555	1	0.932350877	0.932350877	1	NA	NA	1	NA	NA	0	4	NA	1	1	3.34E-16	1	0.001155993	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	69868863	C	T	-	-	-	-	-	-	25	0	0	28	14	50	24	9	37.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3.293619843	2	2	1	1	1	0.706380157	NA	3	NA	1	NA	0.293619843	2.496007984	1.248003992	2	3.774581125	1.645687334	2.293619843	NA	NA	1	NA	NA	0	4	NA	1	1	2.29E-25	1	2.39E-15	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	69897802	C	T	-	-	-	-	-	-	56	0	0	31	11	35.5	34	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.127165669	1.063582834	2	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	3.77E-18	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	69909454	C	T	AUTS2	CCDS5539.1	r.?	-	-	intronic	47	0	0	63	15	23.8	36	5	13.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7	6	5	4	2	2	1	1	NA	NA	NA	NA	NA	NA	2.1400998	1.0700499	2	1.775298246	1.775298246	1	NA	NA	1	NA	NA	0	4	NA	1	1	2.97E-21	1	0.00000104	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	89510197	C	A	-	-	-	-	-	-	57	0	0	31	9	29	30	5	16.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	1.157684631	1.157684631	1	1.798912281	1.798912281	1	NA	NA	0	NA	NA	1	4	NA	1	1	3.57E-14	1	0.000000401	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	69926291	T	A	AUTS2	CCDS5539.1	r.?	-	-	intronic	51	0	0	82	6	7.3	33	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	7	6	5	4	2	2	1	1	NA	NA	NA	NA	NA	NA	0.656417166	0.656417166	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	0.00000395	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	92157980	G	T	-	-	-	-	-	-	25	0	0	39	10	25.6	20	1	5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	1.021956088	1.021956088	1	0.538596491	0.538596491	1	NA	NA	0	NA	NA	1	4	NA	1	1	5.44E-15	1	0.09538952	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	70001515	T	A	ANO1	CCDS44663.1	r.?	-	-	intronic	22	0	0	25	12	48	22	3	13.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	2.396167665	1.198083832	2	1.328982456	1.328982456	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.20E-21	1	0.000179267	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	70038823	C	G	-	-	-	-	-	-	21	0	0	40	14	35	7	3	42.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	3	2	3	0	0	1	1	NA	NA	NA	NA	NA	NA	1.397205589	1.397205589	1	4.192157895	1.397385965	3	NA	NA	0	NA	NA	1	4	NA	1	1	1.25E-22	1	0.00000431	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	92249038	C	A	-	-	-	-	-	-	22	0	0	28	6	21.4	19	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	0.854291417	0.854291417	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	5.36E-09	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	70055894	A	T	-	-	-	-	-	-	58	0	0	54	5	9.3	35	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.557257485	0.557257485	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.00000806	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	70059943	G	A	BAI3	CCDS4968.1	r.?	-	-	intronic	45	0	0	26	6	23.1	23	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.922155689	0.922155689	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	3.30E-09	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	70073868	G	A	-	-	-	-	-	-	19	0	0	41	11	26.8	31	2	6.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.337860279	1.337860279	1	0.635175439	0.635175439	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.34E-16	1	0.010558179	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	70107990	A	T	-	-	-	-	-	-	51	0	0	64	26	40.6	35	5	14.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.432758483	1.216379242	2	1.540385965	1.540385965	1	NA	NA	1	NA	NA	1	4	NA	1	1	7.46E-43	1	0.000000895	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	70160388	T	A	ENSG00000090857	CCDS45520.1	r.?	-	-	intronic	60	0	0	97	17	17.5	67	3	4.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	5.626372055	2	3	2	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	1.048602794	1.048602794	1	0.557923585	0.557923585	1	NA	NA	0	NA	NA	0	4	NA	1	1	1.97E-21	1	0.004717431	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	99731056	G	A	HIATL2	ENST00000375223	r.?	-	-	intronic	18	0	0	36	7	19.4	20	5	25	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	0.774451098	0.774451098	1	2.692982456	0.897660819	3	NA	NA	0	NA	NA	1	4	NA	1	1	5.74E-10	1	4.55E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	103849271	G	T	ENSG00000148123	CCDS6751.1	r.?	-	-	intronic	35	0	0	32	5	15.6	25	7	28	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	0.622754491	0.622754491	1	3.016140351	1.005380117	3	NA	NA	0	NA	NA	1	4	NA	1	1	0.000000562	1	3.47E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	105322670	T	C	C9orf107	ENST00000374801	r.?	-	-	intronic	62	0	0	42	5	11.9	27	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	0.4750499	0.4750499	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	0.00000228	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	70223613	C	T	-	-	-	-	-	-	41	1	2.4	30	14	46.7	33	8	24.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	2.331271457	1.165635729	2	2.273086892	1.136543446	2	NA	NA	1	NA	NA	0	4	NA	0.18577148	1	8.24E-25	1	4.85E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	70246522	A	G	-	-	-	-	-	-	12	0	0	36	9	25	16	1	6.2	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.248003992	1.248003992	1	0.582361105	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	1.63E-13	1	0.077068876	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	70264395	A	G	-	-	-	-	-	-	44	0	0	25	5	20	31	5	16.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.798403194	0.798403194	1	1.412280702	1.412280702	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.000000153	1	0.000000476	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	70297259	G	A	-	-	-	-	-	-	41	0	0	35	7	20	30	1	3.3	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	0.998403194	0.998403194	1	0.299816327	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	4.65E-10	1	0.139615808	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	70316628	G	C	LRRC7	CCDS645.1	r.?	-	-	intronic	52	0	0	47	6	12.8	35	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	0.638978044	0.638978044	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	0.000000141	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	106393421	G	C	-	-	-	-	-	-	52	0	0	19	4	21.1	30	4	13.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	0.842315369	0.842315369	1	1.432666667	1.432666667	1	NA	NA	0	NA	NA	1	4	NA	1	1	0.00000228	1	0.0000154	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	70448206	G	T	-	-	-	-	-	-	35	0	0	57	4	7	33	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	7	6	5	4	2	2	1	1	NA	NA	NA	NA	NA	NA	0.629441118	0.629441118	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	0.000199821	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	70450009	A	T	NETO1	CCDS12000.1	r.?	-	-	intronic	32	0	0	39	17	43.6	23	7	30.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.740518962	0.870259481	2	2.666666667	1.333333333	2	NA	NA	1	NA	NA	1	4	NA	1	1	3.51E-29	1	1.79E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	70466872	C	G	KLHL1	CCDS9445.1	r.?	-	-	intronic	67	0	0	57	7	12.3	38	1	2.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.737017964	0.737017964	1	0.280070175	0.280070175	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.66E-08	1	0.173434892	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	70478517	C	T	SULF1	CCDS6204.1	r.?	-	-	intronic	53	0	0	52	29	55.8	39	11	28.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	2.78554491	1.392772455	2	2.648803734	1.324401867	2	NA	NA	1	NA	NA	0	4	NA	1	1	5.88E-53	1	7.20E-17	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	70491859	G	C	UGT2A1	ENST00000457664	r.?	-	-	intronic	44	0	0	42	9	21.4	35	1	2.9	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	1.068291417	1.068291417	1	0.263474954	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	7.51E-13	1	0.16091139	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	70545898	G	A	-	-	-	-	-	-	26	0	0	60	11	18.3	38	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	7	6	5	4	2	2	1	1	NA	NA	NA	NA	NA	NA	1.645538922	1.645538922	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	1.34E-14	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	70559106	G	T	-	-	-	-	-	-	32	0	0	47	17	36.2	27	2	7.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7	6	5	4	2	2	1	1	NA	NA	NA	NA	NA	NA	3.25510978	1.085036593	3	0.945122807	0.945122807	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.81E-27	1	0.00807567	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	70643244	T	A	-	-	-	-	-	-	21	0	0	18	4	22.2	10	2	20	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.886227545	0.886227545	1	1.754385965	1.754385965	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.00000181	1	0.001095391	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	70690172	T	C	-	-	-	-	-	-	30	0	0	37	10	27	40	3	7.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3.293619843	2	2	1	1	1	0.706380157	NA	3	NA	1	NA	0.293619843	1.347844311	1.347844311	1	0.754916225	0.754916225	1	NA	NA	1	NA	NA	0	4	NA	1	1	3.01E-15	1	0.001075403	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	70710756	G	A	ENSG00000235812	ENST00000433248	r.?	-	-	downstream	48	0	0	42	24	57.1	32	13	40.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	3	2	3	0	0	1	1	NA	NA	NA	NA	NA	NA	2.279441118	1.139720559	2	3.967403509	1.322467836	3	NA	NA	0	NA	NA	1	4	NA	1	1	1.93E-44	1	3.88E-22	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	70774926	G	A	-	-	-	-	-	-	44	0	0	48	8	16.7	28	4	14.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0.833666667	0.833666667	1	1.343187709	1.343187709	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.23E-10	1	0.0000116	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	70800348	T	G	-	-	-	-	-	-	32	0	0	61	9	14.8	43	1	2.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.297222263	4	2	2	2	2	0.702777737	1	3	NA	2	NA	0.297222263	NA	0.930807258	0.930807258	1	0.247754386	0.247754386	1	NA	NA	0	NA	NA	0	4	NA	1	1	2.68E-11	1	0.193893409	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	70808195	G	A	COL19A1	CCDS4970.1	r.?	-	-	intronic	48	0	0	37	8	21.6	29	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.862275449	0.862275449	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	1.33E-11	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	70810856	A	T	VAC14	CCDS10896.1	r.?	-	-	intronic	47	0	0	43	13	30.2	36	7	19.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	5.626372055	2	3	2	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	1.809588822	0.904794411	2	2.405270565	1.01333091	2.373627945	NA	NA	0	NA	NA	0	4	NA	1	1	3.88E-20	1	5.74E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	70854101	G	C	-	-	-	-	-	-	61	0	0	57	22	38.6	33	8	24.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.312918164	1.156459082	2	2.606807018	1.303403509	2	NA	NA	1	NA	NA	1	4	NA	1	1	7.03E-36	1	4.85E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	70855308	C	T	-	-	-	-	-	-	57	0	0	40	22	55	28	5	17.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	2.745608782	1.372804391	2	1.749175439	1.749175439	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.48E-40	1	0.000000279	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	70885804	G	A	WBSCR17	CCDS5540.1	r.?	-	-	intronic	28	0	0	75	9	12	42	5	11.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7	6	5	4	2	2	1	1	NA	NA	NA	NA	NA	NA	1.079041916	1.079041916	1	1.519859649	1.519859649	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.82E-10	1	0.00000228	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	111365369	A	T	-	-	-	-	-	-	36	0	0	34	12	35.3	21	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	1.409181637	1.409181637	1	0	0	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.21E-19	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	70894782	T	A	-	-	-	-	-	-	44	0	0	51	14	27.5	28	2	7.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	1.470190912	1.470190912	1	0.835807018	0.835807018	1	NA	NA	0	NA	NA	1	4	NA	1	1	6.64E-21	1	0.008668191	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	70914902	C	A	-	-	-	-	-	-	65	0	0	46	18	39.1	34	6	17.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.951878244	0.975939122	2	1.653154103	1.653154103	1	NA	NA	1	NA	NA	0	4	NA	1	1	9.41E-30	1	1.86E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	70920574	G	T	-	-	-	-	-	-	41	0	0	35	4	11.4	25	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	0.60946096	0.60946096	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	0.0000289	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	70956298	C	T	WBSCR17	CCDS5540.1	r.?	-	-	intronic	30	0	0	57	19	33.3	42	10	23.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7	6	5	4	2	2	1	1	NA	NA	NA	NA	NA	NA	2.994341317	0.998113772	3	3.039719298	1.013239766	3	NA	NA	1	NA	NA	0	4	NA	1	1	1.01E-29	1	1.24E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	70997281	A	G	HYDIN2	CCDS42189.1	r.?	-	-	intronic	87	0	0	88	17	19.3	61	9	14.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	5.626372055	2	3	2	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	1.156459082	1.156459082	1	1.834948678	0.917474339	2	NA	NA	0	NA	NA	0	4	NA	1	1	3.34E-22	1	2.68E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	71015650	C	A	UACA	CCDS10235.1	r.?	-	-	intronic	35	0	0	43	9	20.9	34	3	8.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3.293619843	2	2	1	1	1	0.706380157	NA	3	NA	1	NA	0.293619843	1.043331337	1.043331337	1	0.885768371	0.885768371	1	NA	NA	0	NA	NA	0	4	NA	1	1	9.45E-13	1	0.000666058	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	71021710	A	T	WBSCR17	CCDS5540.1	r.?	-	-	intronic	25	0	0	56	6	10.7	24	2	8.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7	6	5	4	2	2	1	1	NA	NA	NA	NA	NA	NA	0.962145709	0.962145709	1	1.060070175	1.060070175	1	NA	NA	1	NA	NA	0	4	NA	1	1	0.000000409	1	0.006413403	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	17	71024447	A	C	SLC39A11	CCDS11690.1	r.?	-	-	intronic	50	0	0	62	18	29	33	3	9.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	8.431331109	6.213584959	8	5	0	1	0.568668891	0.786415041	8	5	1	2	0.431331109	0.213584959	3.022770652	1.007590217	3	1.181681845	1.181681845	1	NA	NA	0	NA	NA	0	4	NA	1	1	5.72E-27	1	0.000609557	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	71028138	G	T	-	-	-	-	-	-	40	0	0	53	17	32.1	37	8	21.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.923437126	0.961718563	2	2.326736842	1.163368421	2	NA	NA	1	NA	NA	1	4	NA	1	1	2.08E-26	1	1.33E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	71051119	G	C	-	-	-	-	-	-	34	0	0	32	10	31.2	24	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.869508982	0.934754491	2	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	5.70E-16	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	71054423	A	G	HYDIN2	CCDS42189.1	r.?	-	-	intronic	96	0	0	100	24	24	52	1	1.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	5.626372055	2	3	2	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	1.438083832	0.719041916	2	0.235567736	0.235567736	1	NA	NA	0	NA	NA	1	4	NA	1	1	3.30E-33	1	0.229451111	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	71089103	T	G	C4orf7	CCDS3537.1	r.?	-	-	upstream	55	0	0	32	12	37.5	33	6	18.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	1.872005988	0.936002994	2	1.653532472	1.653532472	1	NA	NA	1	NA	NA	0	4	NA	1	1	5.03E-20	1	1.54E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	71190953	C	T	-	-	-	-	-	-	28	0	0	61	11	18	37	9	24.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7	6	5	4	2	2	1	1	NA	NA	NA	NA	NA	NA	1.618562874	1.618562874	1	3.103578947	1.034526316	3	NA	NA	1	NA	NA	0	4	NA	1	1	1.62E-14	1	2.14E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	71246758	T	G	NCOA2	CCDS47872.1	r.?	-	-	intronic	49	0	0	50	19	38	25	6	24	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.896966068	0.948483034	2	2.25430105	1.127150525	2	NA	NA	1	NA	NA	0	4	NA	1	1	5.00E-31	1	2.55E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	71370194	G	A	-	-	-	-	-	-	44	0	0	32	21	65.6	29	10	34.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.618762475	1.309381238	2	3.026315789	1.513157895	2	NA	NA	1	NA	NA	1	4	NA	1	1	5.84E-41	1	1.79E-16	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	71394171	G	T	-	-	-	-	-	-	49	0	0	46	10	21.7	31	5	16.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.300267465	1.300267465	1	1.734280702	1.734280702	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.38E-14	1	0.000000476	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	113311760	G	T	SVEP1	CCDS48004.1	r.?	-	-	intronic	57	0	0	37	6	16.2	27	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	0.646706587	0.646706587	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	3.18E-08	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	71428075	C	T	-	-	-	-	-	-	19	0	0	58	12	20.7	41	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.240347305	1.240347305	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	1.76E-16	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	71449818	G	A	-	-	-	-	-	-	40	0	0	61	10	16.4	40	2	5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.982690619	0.982690619	1	0.538596491	0.538596491	1	NA	NA	1	NA	NA	1	4	NA	1	1	6.98E-13	1	0.017193422	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	71469081	C	T	ENSG00000235418	ENST00000446016	r.?	-	-	upstream	37	0	0	48	16	33.3	40	6	15	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	5.626372055	2	3	2	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	1.995341317	0.997670659	2	1.859745282	1.859745282	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.96E-25	1	5.18E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	23429020	C	A	IGF2BP3	CCDS5382.1	r.?	-	-	intronic	45	0	0	83	29	34.9	50	14	28	4	0	0	13	7	53.8	8	2	25	0.002690078	TRUE	TRUE	10.19837984	8.289880778	8	6	2	2	0.801620163	0.710119222	8	6	3	3	0.198379837	0.289880778	4.254448136	1.063612034	4	4.217306969	1.054326742	4	6.558432943	0.964245692	6.801620163	3.765452651	3.765452651	1	4	3	1	1	2.77E-45	1.31E-13	4.84E-21	0.000686131	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	71487718	G	T	SMAP1	CCDS43478.1	r.?	-	-	intronic	38	0	0	26	14	53.8	28	7	25	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.147704591	1.073852295	2	2.192982456	1.096491228	2	NA	NA	1	NA	NA	1	4	NA	1	1	5.57E-26	1	8.44E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	71518668	C	T	PIP5K1B	CCDS6624.1	r.?	-	-	intronic	45	0	0	37	9	24.3	29	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	0.97005988	0.97005988	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	2.14E-13	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	71534613	G	T	ZNF638	ENST00000410075	r.?	-	-	intronic	23	0	0	39	6	15.4	32	4	12.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.922770459	0.922770459	1	1.346491228	1.346491228	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.43E-08	1	0.0000201	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	71557944	G	A	-	-	-	-	-	-	35	0	0	16	8	50	14	3	21.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.996007984	0.998003992	2	1.877192982	1.877192982	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.85E-15	1	0.0000437	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	71558393	C	T	CALN1	CCDS47603.1	r.?	-	-	intronic	43	0	0	67	29	43.3	45	9	20	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7	6	5	4	2	2	1	1	NA	NA	NA	NA	NA	NA	3.893542914	0.973385729	4	2.554385965	0.851461988	3	NA	NA	1	NA	NA	0	4	NA	1	1	1.22E-48	1	1.47E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	71583525	G	C	-	-	-	-	-	-	62	0	0	30	11	36.7	22	8	36.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.46506986	1.46506986	1	3.192982456	1.596491228	2	NA	NA	1	NA	NA	1	4	NA	1	1	2.44E-18	1	1.17E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	71591112	G	C	FOXP1	CCDS2914.1	r.?	-	-	intronic	48	0	0	38	11	28.9	28	6	21.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	1.545036995	1.545036995	1	2.519192982	0.839730994	3	NA	NA	0	NA	NA	1	4	NA	1	1	5.19E-17	1	5.36E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	71604831	C	T	CALN1	CCDS47603.1	r.?	-	-	intronic	32	0	0	76	28	36.8	34	4	11.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7	6	5	4	2	2	1	1	NA	NA	NA	NA	NA	NA	3.309061876	1.103020625	3	1.507087719	1.507087719	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.47E-44	1	0.0000257	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	29528014	C	G	CHN2	CCDS5420.1	r.?	-	-	intronic	28	0	0	76	10	13.2	49	1	2	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	10.19837984	8.289880778	8	6	2	2	0.801620163	0.710119222	8	6	3	3	0.198379837	0.289880778	1.609132246	1.609132246	1	0.301236212	NA	0	NA	NA	0	NA	NA	0	NA	NA	1	1	6.90E-12	1	0.217776325	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	71691045	C	T	RNF121	CCDS8203.1	r.?	-	-	intronic	40	0	0	29	6	20.7	35	2	5.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.238517227	2.673496181	3	2	1	0	0.761482773	0.326503819	3	2	2	1	0.238517227	0.673496181	1.289720371	1.289720371	1	0.538389282	0.538389282	1	NA	NA	0	NA	NA	0	4	NA	1	1	6.72E-09	1	0.013332991	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	38092262	C	T	-	-	-	-	-	-	62	0	0	111	27	24.3	38	8	21.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	10.19154907	8.289880778	8	6	2	2	0.808450931	0.710119222	8	6	3	3	0.191549069	0.289880778	2.960606304	0.986868768	3	3.178042037	1.059347346	3	NA	NA	0	NA	NA	0	4	NA	1	1	2.43E-37	1	1.67E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	71777301	G	T	-	-	-	-	-	-	29	0	0	28	8	28.6	17	7	41.2	0	0	NA	0	0	NA	2	0	0	1	TRUE	FALSE	4.297222263	4	2	2	2	2	0.702777737	1	3	NA	2	NA	0.297222263	NA	1.798722134	1.798722134	1	4.438035088	2.219017544	2	NA	NA	0	0	NA	0	4	NA	1	1	1.11E-12	1	1.45E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	71794477	C	T	-	-	-	-	-	-	49	0	0	47	9	19.1	42	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.14447505	1.14447505	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	2.24E-12	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	17	71851865	C	A	-	-	-	-	-	-	32	0	0	22	15	68.2	23	3	13	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5.714370929	6.213584959	5	5	0	1	0.285629071	0.786415041	5	5	1	2	0.714370929	0.213584959	5.255755864	1.051151173	5	1.688116922	1.688116922	1	NA	NA	0	NA	NA	0	4	NA	1	1	5.04E-30	1	0.000205387	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	114298774	C	A	ZNF483	CCDS35106.1	r.?	-	-	intronic	25	0	0	33	9	27.3	24	2	8.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	1.089820359	1.089820359	1	0.894070175	0.894070175	1	NA	NA	0	NA	NA	1	4	NA	1	1	6.76E-14	1	0.006413403	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	71950896	G	A	-	-	-	-	-	-	56	0	0	42	7	16.7	28	3	10.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	0.833666667	0.833666667	1	0.972131728	0.972131728	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.81E-09	1	0.000372895	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	71952484	C	T	-	-	-	-	-	-	38	0	0	47	16	34	40	7	17.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.297222263	4	2	2	2	2	0.702777737	1	3	NA	2	NA	0.297222263	NA	2.138340999	0.930837661	2.297222263	1.885087719	1.885087719	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.98E-25	1	1.26E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	71965576	T	C	-	-	-	-	-	-	23	0	0	53	13	24.5	28	4	14.3	2	0	0	0	0	NA	0	0	NA	1	TRUE	FALSE	7	6	5	4	2	2	1	1	NA	NA	NA	NA	NA	NA	2.203043912	1.101521956	2	1.826385965	1.826385965	1	NA	NA	1	NA	NA	0	4	NA	1	1	8.53E-19	1	0.0000116	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	71999812	G	A	-	-	-	-	-	-	14	0	0	58	7	12.1	30	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	7	6	5	4	2	2	1	1	NA	NA	NA	NA	NA	NA	1.088033932	1.088033932	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	1.88E-08	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	17	72001349	A	G	-	-	-	-	-	-	13	0	0	35	22	62.9	26	9	34.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5.714370929	6.213584959	5	5	0	1	0.285629071	0.786415041	5	5	1	2	0.714370929	0.213584959	4.847317358	0.969463472	5	4.492988115	0.938695887	4.786415041	NA	NA	0	NA	NA	1	4	NA	1	1	3.31E-42	1	5.65E-15	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	72013135	G	C	-	-	-	-	-	-	40	0	0	52	9	17.3	27	4	14.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	0.924883737	0.924883737	1	1.742245614	1.742245614	1	NA	NA	0	NA	NA	1	4	NA	1	1	5.92E-12	1	0.00001	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	38609584	G	T	AMPH	CCDS5456.1	r.?	-	-	intronic	52	0	0	97	16	16.5	53	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	10.19154907	8.289880778	8	6	2	2	0.808450931	0.710119222	8	6	3	3	0.191549069	0.289880778	2.010288231	1.005144116	2	0	NA	0	NA	NA	0	NA	NA	0	NA	NA	1	1	8.26E-20	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	72058313	C	A	CLPB	CCDS8215.1	r.?	-	-	intronic	34	0	0	38	8	21.1	39	6	15.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.238517227	2.673496181	3	2	1	0	0.761482773	0.326503819	3	2	2	1	0.238517227	0.673496181	1.314642504	1.314642504	1	1.454595605	1.454595605	1	NA	NA	0	NA	NA	0	4	NA	1	1	1.67E-11	1	4.43E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	114979691	G	A	ROD1	CCDS6784.1	r.?	-	-	downstream	39	0	0	35	9	25.7	31	1	3.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	1.025948104	1.025948104	1	0.344701754	0.344701754	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.23E-13	1	0.143917729	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	115127590	G	A	-	-	-	-	-	-	45	0	0	36	8	22.2	16	4	25	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	0.886227545	0.886227545	1	2.692982456	0.897660819	3	NA	NA	0	NA	NA	1	4	NA	1	1	1.04E-11	1	0.00000108	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	72118040	C	A	DACH1	ENST00000305425	r.?	-	-	intronic	44	0	0	53	17	32.1	47	7	14.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.923437126	0.961718563	2	1.605017544	1.605017544	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.08E-26	1	4.12E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	72149217	G	C	SLC4A4	CCDS47071.1	r.?	-	-	intronic	53	0	0	38	5	13.2	20	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	0.658946108	0.658946108	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	0.00000137	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	72150371	C	T	CLPB	CCDS8215.1	r.?	-	-	upstream	58	0	0	37	9	24.3	35	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	4.238517227	2.673496181	3	2	1	0	0.761482773	0.326503819	3	2	2	1	0.238517227	0.673496181	1.514019566	1.514019566	1	0	NA	0	NA	NA	0	NA	NA	0	NA	NA	1	1	2.14E-13	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	72189035	G	A	-	-	-	-	-	-	44	0	0	54	27	50	42	6	14.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	2.673074386	1.336537193	2	1.683385965	1.683385965	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.27E-47	1	7.02E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	72197959	G	A	TNPO1	CCDS43329.1	r.?	-	-	intronic	39	0	0	57	22	38.6	37	8	21.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.312918164	1.156459082	2	2.326736842	1.163368421	2	NA	NA	1	NA	NA	1	4	NA	1	1	7.03E-36	1	1.33E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	72205142	T	G	SIPA1L1	CCDS9807.1	r.?	-	-	intronic	50	1	2	23	12	52.2	24	8	33.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	3	2	3	0	0	1	1	NA	NA	NA	NA	NA	NA	2.083832335	1.041916168	2	3.254052632	1.084684211	3	NA	NA	0	NA	NA	1	4	NA	0.221687443	1	3.14E-22	1	2.68E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	72228358	A	T	-	-	-	-	-	-	34	0	0	44	13	29.5	35	2	5.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.767644711	0.883822355	2	0.614	0.614	1	NA	NA	1	NA	NA	1	4	NA	1	1	5.49E-20	1	0.013332991	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	72288158	C	T	-	-	-	-	-	-	20	0	0	26	13	50	22	4	18.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.566189755	2	1	1	1	1	0.433810245	NA	2	NA	1	NA	0.566189755	2.496007984	1.248003992	2	1.699537763	1.699537763	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.20E-23	1	0.00000425	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	72290291	C	T	PDE2A	CCDS8216.1	r.?	-	-	intronic	8	0	0	36	9	25	15	1	6.7	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	4.238517227	2.673496181	3	2	1	0	0.761482773	0.326503819	3	2	2	1	0.238517227	0.673496181	1.557633299	1.557633299	1	0.632843542	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	1.63E-13	1	0.072431031	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	72293795	C	T	PDE2A	CCDS8216.1	r.?	-	-	intronic	25	0	0	36	7	19.4	31	2	6.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.238517227	2.673496181	3	2	1	0	0.761482773	0.326503819	3	2	2	1	0.238517227	0.673496181	1.20872344	1.20872344	1	0.61395269	0.61395269	1	NA	NA	0	NA	NA	0	4	NA	1	1	5.74E-10	1	0.010558179	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	72350846	G	C	PDE2A	CCDS8216.1	r.?	-	-	intronic	15	1	6.7	30	20	66.7	22	13	59.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.238517227	2.673496181	3	2	1	0	0.761482773	0.326503819	3	2	2	1	0.238517227	0.673496181	4.155765641	1.385255214	3	5.58224677	2.791123385	2	NA	NA	0	NA	NA	0	4	NA	0.072431031	1	2.73E-39	1	5.82E-25	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	72376652	A	G	PDE2A	CCDS8216.1	r.?	-	-	intronic	27	0	0	38	14	36.8	22	3	13.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.238517227	2.673496181	3	2	1	0	0.761482773	0.326503819	3	2	2	1	0.238517227	0.673496181	2.292836216	1.146418108	2	1.284577937	1.284577937	1	NA	NA	0	NA	NA	0	4	NA	1	1	5.28E-23	1	0.000179267	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	72382642	G	T	-	-	-	-	-	-	38	0	0	44	9	20.5	35	4	11.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	5.626372055	2	3	2	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	1.228363273	1.228363273	1	1.413406414	1.413406414	1	NA	NA	0	NA	NA	0	4	NA	1	1	1.18E-12	1	0.0000289	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	17	72398538	C	A	-	-	-	-	-	-	32	0	0	44	21	47.7	25	3	12	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5.714370929	6.213584959	5	5	0	1	0.285629071	0.786415041	5	5	1	2	0.714370929	0.213584959	3.67594655	0.918986637	4	1.558261774	1.558261774	1	NA	NA	0	NA	NA	0	4	NA	1	1	8.60E-37	1	0.00026475	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	72400456	A	G	-	-	-	-	-	-	28	0	0	35	20	57.1	32	9	28.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.279441118	1.139720559	2	2.464912281	1.23245614	2	NA	NA	1	NA	NA	1	4	NA	1	1	2.88E-37	1	4.94E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	72440779	T	C	-	-	-	-	-	-	56	0	0	40	9	22.5	29	5	17.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.123203593	1.123203593	1	1.615582419	1.615582419	1	NA	NA	1	NA	NA	0	4	NA	1	1	4.64E-13	1	0.000000336	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	72451570	A	T	RGS6	CCDS9808.1	r.?	-	-	intronic	45	0	0	39	4	10.3	28	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	3	2	3	0	0	1	1	NA	NA	NA	NA	NA	NA	0.411177645	0.411177645	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	0.0000447	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	119270417	G	A	ASTN2	CCDS48009.1	r.?	-	-	intronic	32	0	0	34	12	35.3	27	2	7.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	1.409181637	1.409181637	1	0.797122807	0.797122807	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.21E-19	1	0.00807567	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	122233347	T	A	-	-	-	-	-	-	45	0	0	37	9	24.3	35	9	25.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	0.97005988	0.97005988	1	2.768385965	0.922795322	3	NA	NA	0	NA	NA	1	4	NA	1	1	2.14E-13	1	1.23E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	131853589	G	A	CRAT	CCDS6919.1	r.?	-	-	downstream	21	0	0	26	5	19.2	30	1	3.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	0.766467066	0.766467066	1	0.355473684	0.355473684	1	NA	NA	0	NA	NA	1	4	NA	1	1	0.000000188	1	0.139615808	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	72529509	A	G	-	-	-	-	-	-	55	0	0	38	5	13.2	43	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	5.626372055	2	3	2	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	0.790946108	0.790946108	1	0	0	1	NA	NA	0	NA	NA	0	3	NA	1	1	0.00000137	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	136502954	G	T	DBH	CCDS6977.2	r.?	-	-	intronic	18	0	0	49	7	14.3	23	3	13	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	9	4	7	3	2	1	1	1	NA	NA	NA	NA	NA	NA	1.571858283	1.571858283	1	1.400350877	1.400350877	1	NA	NA	1	NA	NA	0	4	NA	1	1	5.58E-09	1	0.000205387	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	72669049	G	T	HEXA	CCDS10243.1	r.?	-	-	upstream	44	0	0	30	6	20	31	1	3.2	217	0	0	114	27	23.7	134	2	1.5	0.387879672	TRUE	TRUE	3	3.293619843	2	2	1	1	1	0.706380157	NA	3	NA	1	NA	0.293619843	0.998403194	0.998403194	1	0.322097589	0.322097589	1	1.183107784	1.183107784	1	0.150983245	0.150983245	1	4	2	1	1	8.37E-09	5.42E-37	0.143917729	0.14516169	YES	1_1	0_0	somatic	custom.pulldown.HiSeq
PD9852b	15	72671494	G	C	HEXA	CCDS10243.1	r.?	-	-	upstream	35	0	0	29	7	24.1	28	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3.293619843	2	2	1	1	1	0.706380157	NA	3	NA	1	NA	0.293619843	1.203075848	1.203075848	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	1.11E-10	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	72686567	G	A	TRHDE	CCDS9004.1	r.?	-	-	intronic	52	0	0	38	6	15.8	47	8	17	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.788738523	0.788738523	1	1.66122807	1.66122807	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.76E-08	1	1.03E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	138059333	A	G	-	-	-	-	-	-	27	0	0	41	13	31.7	35	5	14.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	8	6.675936267	5	3	3	3	1	0.324063733	NA	4	NA	3	NA	0.675936267	3.167469062	1.055823021	3	1.923044851	1.923044851	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.89E-20	1	0.000000895	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	72788915	C	A	-	-	-	-	-	-	34	0	0	29	9	31	18	2	11.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.23752495	1.23752495	1	0.973684211	0.973684211	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.79E-14	1	0.003626632	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	72797973	T	C	FCHSD2	CCDS8218.2	r.?	-	-	intronic	78	0	0	43	10	23.3	36	2	5.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.238517227	2.673496181	3	2	1	0	0.761482773	0.326503819	3	2	2	1	0.238517227	0.673496181	1.451714234	1.451714234	1	0.528943856	0.528943856	1	NA	NA	0	NA	NA	0	4	NA	1	1	1.61E-14	1	0.014070883	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	72850706	C	A	-	-	-	-	-	-	40	0	0	35	17	48.6	26	5	19.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.91211976	1.45605988	2	2.068210526	2.068210526	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.18E-30	1	0.000000188	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	72857121	C	G	-	-	-	-	-	-	45	0	0	38	9	23.7	31	3	9.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.183107784	1.183107784	1	1.141877193	1.141877193	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.79E-13	1	0.000505952	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	72902559	G	A	TRHDE	CCDS9004.1	r.?	-	-	intronic	38	0	0	38	6	15.8	35	0	0	0	0	NA	4	0	0	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.788738523	0.788738523	1	0	0	1	0	0	1	NA	NA	1	3	NA	1	1	3.76E-08	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	72998326	G	C	GXYLT2	CCDS46870.1	r.?	-	-	intronic	30	0	0	36	11	30.6	26	2	7.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	1.635921524	1.635921524	1	0.906438596	0.906438596	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.62E-17	1	0.007502227	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	73013510	G	C	-	-	-	-	-	-	55	0	0	59	5	8.5	32	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.509321357	0.509321357	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.0000125	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	73063192	C	T	-	-	-	-	-	-	63	0	0	38	11	28.9	32	2	6.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	3	2	3	0	0	1	1	NA	NA	NA	NA	NA	NA	1.153692615	1.153692615	1	0.605859649	0.605859649	1	NA	NA	0	NA	NA	1	4	NA	1	1	5.19E-17	1	0.011224977	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	73075994	C	G	-	-	-	-	-	-	50	0	0	30	16	53.3	27	8	29.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.127744511	1.063872255	2	2.596491228	1.298245614	2	NA	NA	1	NA	NA	1	4	NA	1	1	2.08E-29	1	7.97E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	73078750	C	G	-	-	-	-	-	-	27	0	0	31	10	32.3	23	1	4.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	3	2	3	0	0	1	1	NA	NA	NA	NA	NA	NA	1.289421158	1.289421158	1	0.420192982	0.420192982	1	NA	NA	0	NA	NA	1	4	NA	1	1	3.94E-16	1	0.108890944	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	73082912	T	A	-	-	-	-	-	-	21	0	0	46	9	19.6	33	4	12.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0.97843513	0.97843513	1	1.136543446	1.136543446	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.82E-12	1	0.0000228	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	73082913	C	A	-	-	-	-	-	-	21	0	0	45	10	22.2	30	3	10	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.108227545	1.108227545	1	0.939292104	0.939292104	1	NA	NA	1	NA	NA	0	4	NA	1	1	2.66E-14	1	0.000458697	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	2622114	G	T	-	-	-	-	-	-	55	0	0	27	11	40.7	25	8	32	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.624750499	0.81237525	2	2.807017544	1.403508772	2	NA	NA	1	NA	NA	1	4	NA	1	1	5.92E-19	1	3.92E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	73179953	A	C	-	-	-	-	-	-	55	0	0	52	16	30.8	34	8	23.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.537540918	0.768770459	2	2.207336445	1.103668222	2	NA	NA	1	NA	NA	0	4	NA	1	1	1.33E-24	1	6.32E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	73196607	G	T	-	-	-	-	-	-	59	0	0	47	9	19.1	38	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.95347505	0.95347505	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	2.24E-12	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	73213427	G	C	-	-	-	-	-	-	65	0	0	48	4	8.3	33	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0.414337325	0.414337325	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	0.000102016	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	73258886	T	A	-	-	-	-	-	-	34	0	0	58	16	27.6	35	5	14.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	5.626372055	2	3	2	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	1.653796407	0.826898204	2	1.772957169	1.772957169	1	NA	NA	0	NA	NA	0	4	NA	1	1	1.00E-23	1	0.000000895	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	73264706	G	T	-	-	-	-	-	-	41	1	2.4	44	16	36.4	26	2	7.7	0	0	NA	1	0	0	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.817093812	0.908546906	2	0.906438596	0.906438596	1	0	NA	0	NA	NA	1	4	NA	0.18577148	1	5.57E-26	1	0.007502227	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	73345582	C	G	DPF3	CCDS45133.1	r.?	-	-	intronic	35	0	0	39	7	17.9	27	1	3.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	3	2	3	0	0	1	1	NA	NA	NA	NA	NA	NA	0.714570858	0.714570858	1	0.361561404	0.361561404	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.04E-09	1	0.126579904	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	73365728	G	A	PLEKHB1	CCDS44672.1	r.?	-	-	intronic	24	0	0	35	9	25.7	22	2	9.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.238517227	2.673496181	3	2	1	0	0.761482773	0.326503819	3	2	2	1	0.238517227	0.673496181	1.601247031	1.601247031	1	0.859533767	0.859533767	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.23E-13	1	0.005403392	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	17	73370603	G	T	GRB2	CCDS11721.1	r.?	-	-	intronic	30	0	0	53	17	32.1	31	1	3.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5.714370929	6.213584959	5	5	0	1	0.285629071	0.786415041	5	5	1	2	0.714370929	0.213584959	2.473750194	1.08230606	2.285629071	0.415536473	0.415536473	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.08E-26	1	0.143917729	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	73444340	T	A	TRPM3	CCDS43835.1	r.?	-	-	intronic	59	0	0	30	9	30	29	1	3.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	1.19760479	1.19760479	1	0.366245614	0.366245614	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.54E-14	1	0.135292269	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	73476346	A	G	NEO1	CCDS10247.1	r.?	-	-	intronic	37	0	0	34	5	14.7	33	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3.293619843	2	2	1	1	1	0.706380157	NA	3	NA	1	NA	0.293619843	0.733826347	0.733826347	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	0.000000771	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	73503168	G	C	PDZRN3	CCDS33789.1	r.?	-	-	intronic	54	0	0	46	13	28.3	33	1	3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	1.512960102	1.512960102	1	0.353157895	0.353157895	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.07E-19	1	0.15245715	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	73538496	T	A	PDZRN3	CCDS33789.1	r.?	-	-	intronic	42	0	0	37	6	16.2	26	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	0.866076101	0.866076101	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	3.18E-08	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	73540684	C	G	-	-	-	-	-	-	49	0	0	42	12	28.6	37	5	13.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.427716567	1.427716567	1	1.319210526	1.319210526	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.35E-18	1	0.00000119	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	73565721	C	A	-	-	-	-	-	-	55	0	0	49	20	40.8	37	8	21.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	2.036742515	1.018371257	2	2.542736842	0.847578947	3	NA	NA	0	NA	NA	1	4	NA	1	1	2.35E-33	1	1.33E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	73631402	A	G	-	-	-	-	-	-	68	0	0	45	6	13.3	24	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.663938124	0.663938124	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.000000108	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	73632053	A	G	LAT2	CCDS5566.2	r.?	-	-	intronic	17	0	0	69	7	10.1	24	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	7	6	5	4	2	2	1	1	NA	NA	NA	NA	NA	NA	0.908193613	0.908193613	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	6.43E-08	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	73632226	G	A	ALMS1	CCDS42697.1	r.?	-	-	intronic	40	0	0	42	13	31	39	8	20.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.85752495	0.928762475	2	2.208245614	1.104122807	2	NA	NA	1	NA	NA	1	4	NA	1	1	2.72E-20	1	2.09E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	4132880	T	C	-	-	-	-	-	-	14	0	0	15	5	33.3	23	4	17.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.329341317	1.329341317	1	1.526315789	1.526315789	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.000000009	1	0.00000513	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	5411624	C	T	UCN3	CCDS7065.1	r.?	-	-	intronic	62	0	0	45	11	24.4	38	6	15.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.974051896	0.974051896	1	1.385964912	1.385964912	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.24E-16	1	3.76E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	73706960	C	A	-	-	-	-	-	-	31	0	0	50	11	22	28	1	3.6	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	1.098243513	1.098243513	1	0.327072357	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	1.52E-15	1	0.130947004	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	73725003	T	C	KCNB2	CCDS6209.1	r.?	-	-	intronic	73	0	0	40	7	17.5	41	3	7.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0.873602794	0.873602794	1	0.685683236	0.685683236	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.26E-09	1	0.001155993	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	6027912	G	T	-	-	-	-	-	-	35	0	0	54	15	27.8	44	9	20.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.109780439	1.109780439	1	1.798245614	0.899122807	2	NA	NA	1	NA	NA	1	4	NA	1	1	2.20E-22	1	1.18E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	73744718	T	A	KCNB2	CCDS6209.1	r.?	-	-	intronic	54	0	0	42	8	19	28	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0.948483034	0.948483034	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	3.96E-11	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	73756070	T	C	-	-	-	-	-	-	45	0	0	37	15	40.5	38	9	23.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	2.021766467	1.010883234	2	2.789947368	0.929982456	3	NA	NA	0	NA	NA	1	4	NA	1	1	2.58E-25	1	2.79E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	73791849	A	T	-	-	-	-	-	-	36	0	0	52	18	34.6	38	13	34.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.073237525	1.036618762	2	3.684	1.842	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.39E-28	1	5.88E-21	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	9380132	C	T	ENSG00000224998	ENST00000426375	r.?	-	-	intronic	35	0	0	33	13	39.4	25	2	8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.572854291	0.786427146	2	0.701754386	0.701754386	1	NA	NA	1	NA	NA	1	4	NA	1	1	6.37E-22	1	0.006948068	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	73809340	A	C	-	-	-	-	-	-	53	0	0	36	6	16.7	36	1	2.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	0.892806845	0.892806845	1	0.329614035	0.329614035	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.68E-08	1	0.165106833	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	73863190	G	A	NPTN	CCDS10249.1	r.?	-	-	intronic	46	0	0	38	6	15.8	32	3	9.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3.293619843	2	2	1	1	1	0.706380157	NA	3	NA	1	NA	0.293619843	0.788738523	0.788738523	1	0.946161669	0.946161669	1	NA	NA	1	NA	NA	0	4	NA	1	1	3.76E-08	1	0.000556213	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	73913222	C	A	-	-	-	-	-	-	52	0	0	45	21	46.7	32	8	25	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	2.331271457	1.165635729	2	2.942982456	0.980994152	3	NA	NA	0	NA	NA	1	4	NA	1	1	1.60E-36	1	3.69E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	73970736	C	T	GTF2IRD1	CCDS5571.1	r.?	-	-	intronic	19	0	0	45	14	31.1	34	10	29.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6.377205361	6	3	4	3	2	0.622794639	1	4	NA	3	NA	0.377205361	NA	2.602827833	1.094910804	2.377205361	3.754947368	0.938736842	4	NA	NA	0	NA	NA	0	4	NA	1	1	8.81E-22	1	1.15E-15	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	74044463	T	G	PGM2L1	CCDS8231.1	r.5399a>c	c.?	p.?	3'UTR variant	52	0	0	37	7	18.9	42	1	2.4	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	4.238517227	2.673496181	3	2	1	0	0.761482773	0.326503819	3	2	2	1	0.238517227	0.673496181	1.177570774	1.177570774	1	0.226690224	NA	0	NA	NA	0	NA	NA	0	NA	NA	1	1	7.05E-10	1	0.189842622	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	74056826	C	T	TRPM3	ENST00000357533	r.?	-	-	intronic	52	0	0	48	14	29.2	10	1	10	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	1.165668663	1.165668663	1	1.077192982	1.077192982	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.51E-21	1	0.04888987	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	11286396	C	A	CELF2	CCDS44354.1	r.?	-	-	intronic	23	0	0	27	7	25.9	19	2	10.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.033932136	1.033932136	1	0.921052632	0.921052632	1	NA	NA	1	NA	NA	1	4	NA	1	1	6.36E-11	1	0.004039874	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	74195300	T	C	-	-	-	-	-	-	43	0	0	31	6	19.4	29	1	3.4	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	4.238517227	2.673496181	3	2	1	0	0.761482773	0.326503819	3	2	2	1	0.238517227	0.673496181	1.20872344	1.20872344	1	0.321144484	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	1.03E-08	1	0.135292269	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	74210939	T	G	RDH10	CCDS6213.1	r.?	-	-	intronic	22	0	0	34	6	17.6	29	3	10.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0.87859481	0.87859481	1	0.967470867	0.967470867	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.86E-08	1	0.000414371	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	74217788	A	G	-	-	-	-	-	-	37	0	0	50	19	38	45	12	26.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.276966068	1.138483034	2	2.876105263	1.438052632	2	NA	NA	1	NA	NA	1	4	NA	1	1	5.00E-31	1	6.03E-18	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	74289430	T	A	-	-	-	-	-	-	53	0	0	50	7	14	29	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	0.558882236	0.558882236	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	6.46E-09	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	74312295	G	A	-	-	-	-	-	-	43	0	0	35	11	31.4	22	4	18.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.567493014	1.567493014	1	1.70951163	1.70951163	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.82E-17	1	0.00000425	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	74370260	C	T	-	-	-	-	-	-	50	0	0	35	17	48.6	28	6	21.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.94011976	0.97005988	2	1.877192982	1.877192982	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.18E-30	1	5.36E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	18399907	C	G	-	-	-	-	-	-	23	0	0	31	10	32.3	29	1	3.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.289421158	1.289421158	1	0.298245614	0.298245614	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.94E-16	1	0.135292269	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	23376162	G	A	-	-	-	-	-	-	41	0	0	31	17	54.8	27	5	18.5	0	0	NA	2	0	0	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.18762475	1.093812375	2	1.622807018	1.622807018	1	0	0	1	NA	NA	1	4	NA	1	1	1.89E-31	1	0.00000023	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	74429801	G	A	MTHFD2	CCDS1935.2	r.?	-	-	intronic	22	0	0	41	14	34.1	28	8	28.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.043277445	1.021638723	2	3.08077193	1.540385965	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.90E-22	1	1.11E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	24919290	C	G	ARHGAP21	CCDS7144.2	r.?	-	-	intronic	54	0	0	27	12	44.4	30	5	16.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.77245509	0.886227545	2	1.464912281	1.464912281	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.96E-21	1	0.000000401	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	74471321	C	A	STAU2	CCDS6214.1	r.?	-	-	intronic	37	0	0	34	17	50	29	6	20.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	2.496007984	1.248003992	2	1.944334656	1.944334656	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.64E-30	1	6.72E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	74536223	G	C	-	-	-	-	-	-	50	0	0	35	13	37.1	42	8	19	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.852037924	0.926018962	2	1.856666667	1.856666667	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.63E-21	1	3.96E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	74562553	G	A	CNTN3	CCDS33790.1	r.?	-	-	intronic	48	0	0	50	13	26	32	1	3.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	1.389998681	1.389998681	1	0.364929825	0.364929825	1	NA	NA	0	NA	NA	1	4	NA	1	1	3.65E-19	1	0.14819814	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	30899214	A	C	LYZL2	CCDS7167.2	r.?	-	-	downstream	48	0	0	31	17	54.8	38	12	31.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.18762475	1.093812375	2	2.771929825	1.385964912	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.89E-31	1	5.86E-19	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	74599520	G	C	CCDC109A	CCDS7317.1	r.?	-	-	intronic	17	0	0	34	13	38.2	26	5	19.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.297222263	7.325791148	2	4	2	3	0.702777737	0.674208852	3	5	2	3	0.297222263	0.325791148	2.402489004	1.04582349	2.297222263	2.706762427	0.902254142	3	NA	NA	0	NA	NA	0	4	NA	1	1	1.03E-21	1	0.000000188	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	33625483	C	T	NRP1	CCDS7177.1	r.?	-	-	upstream	12	0	0	41	8	19.5	12	2	16.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.778443114	0.778443114	1	1.464912281	1.464912281	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.22E-11	1	0.001595918	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	74631893	G	A	CCDC33	CCDS42058.1	r.?	-	-	downstream	17	0	0	33	7	21.2	21	5	23.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3.293619843	2	2	1	1	1	0.706380157	NA	3	NA	1	NA	0.293619843	1.058307385	1.058307385	1	2.395600821	1.044462895	2.293619843	NA	NA	0	NA	NA	0	4	NA	1	1	2.98E-10	1	5.95E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	74678641	A	C	SPCS2	CCDS44681.1	r.?	-	-	intronic	40	0	0	47	12	25.5	36	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	4.238517227	2.673496181	3	2	1	0	0.761482773	0.326503819	3	2	2	1	0.238517227	0.673496181	1.588785965	1.588785965	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	1.09E-17	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	74707893	A	T	CXCL6	CCDS3560.1	r.?	-	-	downstream	50	0	0	41	10	24.4	37	3	8.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	1.218051896	1.218051896	1	0.735912803	0.735912803	1	NA	NA	1	NA	NA	0	4	NA	1	1	9.51E-15	1	0.000855237	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	74733105	C	G	-	-	-	-	-	-	53	0	0	50	5	10	45	1	2.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.599201597	0.599201597	1	0.236982456	0.236982456	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.00000549	1	0.201934322	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	74765442	C	T	TNNI3K	CCDS44161.1	r.?	-	-	intronic	64	0	0	43	5	11.6	40	2	5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	0.579073852	0.579073852	1	0.588596491	0.588596491	1	NA	NA	0	NA	NA	1	4	NA	1	1	0.00000257	1	0.017193422	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	74848932	A	C	GDA	CCDS6641.1	r.?	-	-	intronic	59	0	0	30	12	40	35	1	2.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	1.596806387	1.596806387	1	0.312385965	0.312385965	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.94E-20	1	0.16091139	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	74862289	C	A	SLCO2B1	CCDS8235.1	r.250c>a	c.?	p.?	5'UTR variant	29	0	0	41	10	24.4	38	4	10.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.238517227	2.673496181	3	2	1	0	0.761482773	0.326503819	3	2	2	1	0.238517227	0.673496181	1.5202501	1.5202501	1	0.991769731	0.991769731	1	NA	NA	1	NA	NA	0	4	NA	1	1	9.51E-15	1	0.0000403	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	74908454	G	T	SEMA4F	CCDS1955.1	r.3580g>u	c.?	p.?	3'UTR variant	40	0	0	48	19	39.6	33	8	24.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.372838323	1.186419162	2	2.606807018	1.303403509	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.92E-31	1	4.85E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	74930421	C	G	-	-	-	-	-	-	58	0	0	40	15	37.5	44	9	20.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.247005988	1.123502994	2	2.208245614	1.104122807	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.09E-24	1	1.18E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	74949391	C	T	TNNI3K	CCDS44161.1	r.?	-	-	intronic	54	0	0	46	9	19.6	22	1	4.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	0.97843513	0.97843513	1	0.529736842	0.529736842	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.82E-12	1	0.104413009	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	34825142	T	A	PARD3	CCDS7178.1	r.?	-	-	intronic	48	0	0	51	6	11.8	36	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.297222263	4	2	2	2	2	0.702777737	1	3	NA	2	NA	0.297222263	NA	0.742130111	0.742130111	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.000000232	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	74991166	T	G	MTHFD2L	ENST00000433372	r.12u>g	c.?	p.?	5'UTR variant	49	0	0	43	15	34.9	41	6	14.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	1.742213573	0.871106786	2	1.326460115	1.326460115	1	NA	NA	1	NA	NA	0	4	NA	1	1	4.05E-24	1	6.05E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	74993828	G	A	-	-	-	-	-	-	55	0	0	45	19	42.2	30	8	26.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3.293619843	2	2	1	1	1	0.706380157	NA	3	NA	1	NA	0.293619843	2.106630739	1.053315369	2	2.687501761	1.171729382	2.293619843	NA	NA	1	NA	NA	1	4	NA	1	1	4.11E-32	1	2.07E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	75062090	C	T	ARRB1	CCDS44684.1	r.?	-	-	intronic	20	1	5	41	15	36.6	19	1	5.3	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	4.238517227	2.673496181	3	2	1	0	0.761482773	0.326503819	3	2	2	1	0.238517227	0.673496181	2.280375149	1.140187575	2	0.500607578	NA	0	NA	NA	0	NA	NA	0	NA	NA	0.09538952	1	1.71E-24	1	0.090843738	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	75079593	T	C	POM121C	CCDS47617.1	r.?	-	-	intronic	41	0	0	41	8	19.5	38	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	6.377205361	6	3	4	3	2	0.622794639	1	4	NA	3	NA	0.377205361	NA	1.631998159	1.631998159	1	0	NA	0	NA	NA	0	NA	NA	0	NA	NA	1	1	3.22E-11	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	34839981	G	A	PARD3	CCDS7178.1	r.?	-	-	intronic	53	0	0	38	11	28.9	29	10	34.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.297222263	4	2	2	2	2	0.702777737	1	3	NA	2	NA	0.297222263	NA	1.817589849	0.908794924	2	3.716315789	1.858157895	2	NA	NA	0	NA	NA	0	4	NA	1	1	5.19E-17	1	1.79E-16	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	75098243	C	A	HK2	CCDS1956.1	r.?	-	-	intronic	52	0	0	46	6	13	25	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.778962076	0.778962076	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.000000123	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	75111011	G	T	-	-	-	-	-	-	42	0	0	33	7	21.2	25	4	16	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.058307385	1.058307385	1	1.502867367	1.502867367	1	NA	NA	1	NA	NA	0	4	NA	1	1	2.98E-10	1	0.00000727	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	75134403	A	G	-	-	-	-	-	-	54	0	0	57	20	35.1	38	5	13.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.103197605	1.051598802	2	1.421894737	1.421894737	1	NA	NA	1	NA	NA	1	4	NA	1	1	9.67E-32	1	0.00000137	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	75142629	G	C	-	-	-	-	-	-	31	0	0	24	8	33.3	19	5	26.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.329341317	1.329341317	1	2.307017544	1.153508772	2	NA	NA	1	NA	NA	1	4	NA	1	1	2.68E-13	1	3.43E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	75152100	G	T	-	-	-	-	-	-	58	0	0	33	12	36.4	39	1	2.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.453093812	1.453093812	1	0.228070175	0.228070175	1	NA	NA	1	NA	NA	1	4	NA	1	1	7.86E-20	1	0.177567718	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	75222200	A	T	-	-	-	-	-	-	48	0	0	56	17	30.4	32	2	6.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.821572854	0.910786427	2	0.667859649	0.667859649	1	NA	NA	1	NA	NA	1	4	NA	1	1	6.22E-26	1	0.011224977	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	75238381	G	T	-	-	-	-	-	-	32	0	0	38	8	21.1	21	1	4.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3.293619843	2	2	1	1	1	0.706380157	NA	3	NA	1	NA	0.293619843	1.053315369	1.053315369	1	0.483146384	0.483146384	1	NA	NA	0	NA	NA	0	4	NA	1	1	1.67E-11	1	0.099912572	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	75246962	A	G	-	-	-	-	-	-	44	0	0	53	9	17	33	6	18.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.018642715	1.018642715	1	1.960491228	1.960491228	1	NA	NA	1	NA	NA	1	4	NA	1	1	7.10E-12	1	1.54E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	75255766	G	A	PPP3CB	CCDS44437.1	r.17c>u	c.?	p.?	5'UTR variant	13	0	0	33	20	60.6	9	4	44.4	1	0	0	0	0	NA	0	0	NA	1	TRUE	FALSE	4.297222263	7.325791148	2	4	2	3	0.702777737	0.674208852	3	5	2	3	0.297222263	0.325791148	3.811278368	1.659081243	2.297222263	6.259388112	1.446992677	4.325791148	NA	NA	0	NA	NA	0	4	NA	1	1	5.14E-38	1	7.72E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	75340148	G	A	-	-	-	-	-	-	51	0	0	52	23	44.2	32	5	15.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	2.206471058	1.103235529	2	1.524421053	1.524421053	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.66E-39	1	0.000000562	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	36286912	T	A	-	-	-	-	-	-	69	0	0	34	15	44.1	40	8	20	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.297222263	4	2	2	2	2	0.702777737	1	3	NA	2	NA	0.297222263	NA	2.77355406	1.207351202	2.297222263	2.154385965	1.077192982	2	NA	NA	1	NA	NA	0	4	NA	1	1	5.18E-26	1	2.61E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	72058292	G	C	-	-	-	-	-	-	18	0	0	60	5	8.3	42	1	2.4	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	7	6	5	4	2	2	1	1	NA	NA	NA	NA	NA	NA	0.746337325	0.746337325	1	0.306526316	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	0.0000136	1	0.189842622	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	75567010	T	C	-	-	-	-	-	-	40	0	0	45	8	17.8	45	4	8.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	0.888578842	0.888578842	1	0.808595549	0.808595549	1	NA	NA	1	NA	NA	0	4	NA	1	1	7.14E-11	1	0.0000791	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	75567188	C	G	UVRAG	CCDS8241.1	r.?	-	-	intronic	13	0	0	47	25	53.2	26	11	42.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.238517227	2.673496181	3	2	1	0	0.761482773	0.326503819	3	2	2	1	0.238517227	0.673496181	3.31464366	1.10488122	3	3.995415201	1.9977076	2	NA	NA	0	NA	NA	0	4	NA	1	1	3.98E-45	1	3.52E-19	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	75603064	G	A	-	-	-	-	-	-	59	0	0	36	8	22.2	35	5	14.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.330227545	1.330227545	1	1.540385965	1.540385965	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.04E-11	1	0.000000895	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	81370092	A	T	HGF	CCDS5597.1	r.?	-	-	intronic	51	0	0	62	12	19.4	44	2	4.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	1.550451098	1.550451098	1	0.574736842	0.574736842	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.19E-16	1	0.020580492	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	82326160	C	A	-	-	-	-	-	-	51	0	0	46	7	15.2	48	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.910786427	0.910786427	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	3.53E-09	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	36618347	C	T	-	-	-	-	-	-	60	0	0	53	5	9.4	49	3	6.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.297222263	4	2	2	2	2	0.702777737	1	3	NA	2	NA	0.297222263	NA	0.591188394	0.591188394	1	0.657087719	0.657087719	1	NA	NA	1	NA	NA	0	4	NA	1	1	0.00000734	1	0.001939399	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	75721104	C	T	-	-	-	-	-	-	32	0	0	85	10	11.8	30	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	9	7.325791148	6	4	3	3	1	0.674208852	NA	5	NA	3	NA	0.325791148	1.297057884	1.297057884	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	2.17E-11	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	75781047	G	C	FAM176A	CCDS1959.1	r.?	-	-	intronic	52	0	0	47	11	23.4	38	4	10.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.402131737	1.402131737	1	1.131052632	1.131052632	1	NA	NA	1	NA	NA	1	4	NA	1	1	7.21E-16	1	0.0000403	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	75785999	A	C	-	-	-	-	-	-	46	0	0	42	15	35.7	26	5	19.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.782149701	0.89107485	2	1.80344084	1.80344084	1	NA	NA	1	NA	NA	0	4	NA	1	1	2.65E-24	1	0.000000188	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	75788233	A	T	-	-	-	-	-	-	47	0	0	37	8	21.6	47	6	12.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	5.626372055	2	3	2	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	1.294275449	1.294275449	1	1.586982641	1.586982641	1	NA	NA	0	NA	NA	0	4	NA	1	1	1.33E-11	1	0.000000141	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	75794092	G	A	-	-	-	-	-	-	37	0	0	32	7	21.9	25	10	40	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	0.874251497	0.874251497	1	4.30877193	1.43625731	3	NA	NA	0	NA	NA	1	4	NA	1	1	2.36E-10	1	2.98E-17	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	75795496	G	A	PTPN9	CCDS10280.1	r.?	-	-	intronic	15	0	0	27	10	37	14	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3.293619843	2	2	1	1	1	0.706380157	NA	3	NA	1	NA	0.293619843	1.847045908	0.923522954	2	0	0	1	NA	NA	1	NA	NA	1	4	NA	1	1	7.62E-17	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	53759020	C	T	PRKG1	CCDS7244.1	r.?	-	-	intronic	46	0	0	47	11	23.4	26	3	11.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.297222263	4	2	2	2	2	0.702777737	1	3	NA	2	NA	0.297222263	NA	1.471681746	1.471681746	1	1.23877193	1.23877193	1	NA	NA	1	NA	NA	1	4	NA	1	1	7.21E-16	1	0.000298167	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	75903397	C	T	IQGAP2	CCDS34188.1	r.?	-	-	intronic	37	0	0	49	13	26.5	26	5	19.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.587884232	0.793942116	2	2.068210526	2.068210526	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.71E-19	1	0.000000188	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	17	75945844	C	T	-	-	-	-	-	-	37	0	0	38	20	52.6	17	5	29.4	0	0	NA	2	2	100	0	0	NA	1	TRUE	FALSE	5.714370929	6.213584959	5	5	0	1	0.285629071	0.786415041	5	5	1	2	0.714370929	0.213584959	4.053559508	1.013389877	4	3.817741346	1.008273342	3.786415041	7.706386897	1.541277379	5	NA	NA	0	4	NA	1	1	2.94E-36	0.000025	1.84E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	75950070	A	G	-	-	-	-	-	-	56	0	0	54	23	42.6	33	9	27.3	0	0	NA	0	0	NA	1	0	0	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	2.126598802	1.063299401	2	2.667736842	1.333868421	2	NA	NA	1	0	0	1	4	NA	1	1	1.12E-38	1	6.76E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	75973494	C	A	PARM1	CCDS47077.1	r.3182c>a	c.?	p.?	3'UTR variant	42	0	0	33	8	24.2	34	0	0	177	0	0	177	32	18.1	210	0	0	1	FALSE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	1.208067864	1.208067864	1	0	NA	0	0.90355489	0.90355489	1	0	NA	0	NA	NA	1	1	4.85E-12	1.90E-39	1	1	YES	1_1	0_0	somatic	custom.pulldown.HiSeq
PD9852b	3	76016268	C	G	ROBO2	ENST00000487694	r.?	-	-	intronic	58	0	0	50	10	20	37	6	16.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	1.069229754	1.069229754	1	1.907052632	1.907052632	1	NA	NA	0	NA	NA	1	4	NA	1	1	8.36E-14	1	3.18E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	17	76037305	T	A	ENSG00000078687	CCDS45799.1	r.?	-	-	intronic	34	0	0	55	38	69.1	16	4	25	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5.714370929	6.213584959	5	5	0	1	0.285629071	0.786415041	5	5	1	2	0.714370929	0.213584959	5.325113346	1.065022669	5	3.246378696	1.082126232	3	NA	NA	0	NA	NA	1	4	NA	1	1	2.29E-74	1	0.00000108	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	76039056	G	A	-	-	-	-	-	-	54	0	0	46	15	32.6	32	5	15.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.953397206	0.976698603	2	1.680421053	1.680421053	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.35E-23	1	0.000000562	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	76130120	C	T	-	-	-	-	-	-	64	0	0	42	16	38.1	30	7	23.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.901958084	0.950979042	2	2.742859649	0.91428655	3	NA	NA	0	NA	NA	1	4	NA	1	1	2.25E-26	1	1.44E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	76149344	C	G	-	-	-	-	-	-	47	0	0	36	7	19.4	39	5	12.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.968451098	0.968451098	1	1.250807018	1.250807018	1	NA	NA	1	NA	NA	1	4	NA	1	1	5.74E-10	1	0.00000156	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	55252371	C	T	-	-	-	-	-	-	59	0	0	55	14	25.5	34	9	26.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.297222263	4	2	2	2	2	0.702777737	1	3	NA	2	NA	0.297222263	NA	1.603755749	0.801877874	2	2.854561404	1.427280702	2	NA	NA	1	NA	NA	0	4	NA	1	1	2.19E-20	1	9.15E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	76155543	T	A	-	-	-	-	-	-	49	0	0	55	9	16.4	43	3	7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.982690619	0.982690619	1	0.754035088	0.754035088	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.01E-11	1	0.001328364	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	76170129	C	T	-	-	-	-	-	-	48	0	0	37	7	18.9	28	5	17.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	0.943491018	0.943491018	1	2.107175439	2.107175439	1	NA	NA	0	NA	NA	1	4	NA	1	1	7.05E-10	1	0.000000279	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	76171818	T	A	-	-	-	-	-	-	45	0	0	41	21	51.2	33	6	18.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	2.555912176	1.277956088	2	2.142491228	1.071245614	2	NA	NA	0	NA	NA	1	4	NA	1	1	1.17E-37	1	1.54E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	55752393	A	G	PCDH15	CCDS44404.1	r.?	-	-	intronic	53	0	0	55	18	32.7	25	7	28	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.297222263	4	2	2	2	2	0.702777737	1	3	NA	2	NA	0.297222263	NA	2.056580902	1.028290451	2	3.016140351	1.508070175	2	NA	NA	0	NA	NA	0	4	NA	1	1	4.61E-28	1	3.47E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	55885991	C	A	PCDH15	CCDS44404.1	r.?	-	-	intronic	40	0	0	46	8	17.4	25	5	20	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.297222263	4	2	2	2	2	0.702777737	1	3	NA	2	NA	0.297222263	NA	1.094327452	1.094327452	1	2.154385965	2.154385965	1	NA	NA	1	NA	NA	0	4	NA	1	1	8.61E-11	1	0.000000153	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	76256776	G	A	C11orf30	CCDS8244.1	r.?	-	-	intronic	58	0	0	44	13	29.5	39	7	17.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.238517227	2.673496181	3	2	1	0	0.761482773	0.326503819	3	2	2	1	0.238517227	0.673496181	1.838007293	1.04344324	1.761482773	1.690731255	1.690731255	1	NA	NA	1	NA	NA	0	4	NA	1	1	5.49E-20	1	1.04E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	59347236	A	G	-	-	-	-	-	-	46	0	0	55	16	29.1	42	8	19	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.297222263	4	2	2	2	2	0.702777737	1	3	NA	2	NA	0.297222263	NA	1.830168325	0.915084163	2	2.046666667	1.023333333	2	NA	NA	0	NA	NA	1	4	NA	1	1	3.78E-24	1	3.96E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	76337586	T	C	HNF4G	ENST00000354370	r.?	-	-	intronic	28	0	0	33	8	24.2	26	3	11.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.208067864	1.208067864	1	1.08018592	1.08018592	1	NA	NA	1	NA	NA	0	4	NA	1	1	4.85E-12	1	0.000298167	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	59476931	G	T	-	-	-	-	-	-	61	0	0	57	4	7	43	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.297222263	4	2	2	2	2	0.702777737	1	3	NA	2	NA	0.297222263	NA	0.440246676	1.481203567	0.297222263	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.000199821	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	76349687	C	T	TTLL5	CCDS32124.1	r.?	-	-	intronic	50	0	0	44	7	15.9	34	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	3	2	3	0	0	1	1	NA	NA	NA	NA	NA	NA	0.634730539	0.634730539	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	2.55E-09	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	92035124	A	T	ANKIB1	CCDS47639.1	r.?	-	-	downstream	66	0	0	45	16	35.6	40	7	17.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.133157685	1.066578842	2	1.885087719	1.885087719	1	NA	NA	1	NA	NA	1	4	NA	1	1	8.61E-26	1	1.26E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	69323778	T	C	CTNNA3	CCDS7269.1	r.?	-	-	intronic	44	0	0	51	16	31.4	34	7	20.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.297222263	4	2	2	2	2	0.702777737	1	3	NA	2	NA	0.297222263	NA	1.974820805	0.987410402	2	2.219017544	1.109508772	2	NA	NA	0	NA	NA	1	4	NA	1	1	9.28E-25	1	3.73E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	76393065	G	A	ROBO2	ENST00000487694	r.?	-	-	intronic	63	0	0	43	19	44.2	27	9	33.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	2.362997757	1.181498878	2	3.920052632	1.306684211	3	NA	NA	0	NA	NA	1	4	NA	1	1	1.36E-32	1	8.44E-15	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	76403845	G	C	CNTNAP4	ENST00000307431	r.?	-	-	intronic	53	0	0	39	9	23.1	25	2	8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	5.626372055	2	3	2	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	1.384155689	1.384155689	1	0.99186415	0.99186415	1	NA	NA	0	NA	NA	0	4	NA	1	1	3.62E-13	1	0.006948068	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	76404025	G	A	-	-	-	-	-	-	19	0	0	24	7	29.2	22	3	13.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.165668663	1.165668663	1	1.192982456	1.192982456	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.51E-11	1	0.000179267	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	76422665	G	C	ADK	CCDS7344.1	r.?	-	-	intronic	38	0	0	69	4	5.8	33	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	9	7.325791148	6	4	3	3	1	0.674208852	NA	5	NA	3	NA	0.325791148	0.637536926	0.637536926	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	0.000416985	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	76427330	G	A	ADK	CCDS7344.1	r.?	-	-	intronic	27	0	0	55	11	20	30	3	10	0	0	NA	1	0	0	0	0	NA	1	TRUE	FALSE	9	7.325791148	6	4	3	3	1	0.674208852	NA	5	NA	3	NA	0.325791148	2.198403194	1.099201597	2	1.409772097	1.409772097	1	0	0	1	NA	NA	0	4	NA	1	1	4.77E-15	1	0.000458697	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	71422425	C	T	-	-	-	-	-	-	29	0	0	45	7	15.6	35	9	25.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.297222263	4	2	2	2	2	0.702777737	1	3	NA	2	NA	0.297222263	NA	0.981121164	0.981121164	1	2.768385965	1.384192982	2	NA	NA	1	NA	NA	0	4	NA	1	1	0.000000003	1	1.23E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	76459773	C	G	-	-	-	-	-	-	50	0	0	31	6	19.4	20	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1.38822692	1.304475247	1	1	0	0	0.61177308	0.695524753	2	2	0	0	0.38822692	0.304475247	0.65576712	0.65576712	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	1.03E-08	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	76475398	G	A	-	-	-	-	-	-	29	0	0	89	14	15.7	35	2	5.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	9	7.325791148	6	4	3	3	1	0.674208852	NA	5	NA	3	NA	0.325791148	1.725746507	0.862873253	2	0.803570095	0.803570095	1	NA	NA	1	NA	NA	0	4	NA	1	1	3.28E-17	1	0.013332991	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	76487172	G	A	-	-	-	-	-	-	50	0	0	63	17	27	36	5	13.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.617844311	0.808922156	2	1.497298246	1.497298246	1	NA	NA	1	NA	NA	1	4	NA	1	1	6.22E-25	1	0.00000104	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	76500955	G	C	-	-	-	-	-	-	44	0	0	47	20	42.6	38	11	28.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.552598802	1.276299401	2	3.113087719	1.55654386	2	NA	NA	1	NA	NA	1	4	NA	1	1	8.18E-34	1	5.19E-17	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	76149914	T	C	ADK	CCDS7344.1	r.?	-	-	intronic	49	0	0	67	13	19.4	40	10	25	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	9	7.325791148	6	4	3	3	1	0.674208852	NA	5	NA	3	NA	0.325791148	2.132451098	1.066225549	2	3.524430243	1.05972687	3.325791148	NA	NA	1	NA	NA	0	4	NA	1	1	2.41E-17	1	7.22E-15	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	76528714	T	C	-	-	-	-	-	-	36	0	0	29	6	20.7	30	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.033347305	1.033347305	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	6.72E-09	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	76601227	G	C	ST6GALNAC3	CCDS672.1	r.?	-	-	intronic	47	0	0	35	11	31.4	35	6	17.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.567493014	1.567493014	1	2.013	2.013	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.82E-17	1	2.24E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	76631851	A	T	-	-	-	-	-	-	49	0	0	40	16	40	33	6	18.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.996806387	0.998403194	2	1.70951163	1.70951163	1	NA	NA	1	NA	NA	0	4	NA	1	1	8.56E-27	1	1.54E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	77640765	A	G	C10orf11	CCDS7351.1	r.?	-	-	intronic	51	0	0	67	18	26.9	48	7	14.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	9	7.325791148	6	4	3	3	1	0.674208852	NA	5	NA	3	NA	0.325791148	2.956852295	0.985617432	3	2.058267262	1.029133631	2	NA	NA	1	NA	NA	0	4	NA	1	1	2.83E-26	1	4.81E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	76673902	C	A	-	-	-	-	-	-	38	0	0	55	5	9.1	44	3	6.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.545273453	0.545273453	1	0.732491228	0.732491228	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.00000883	1	0.00142027	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	76676200	T	A	-	-	-	-	-	-	34	0	0	45	21	46.7	23	1	4.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	2.331271457	1.165635729	2	0.420192982	0.420192982	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.60E-36	1	0.108890944	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	79162442	C	A	KCNMA1	CCDS7352.1	r.?	-	-	intronic	32	0	0	80	20	25	38	4	10.5	201	0	0	302	60	19.9	237	29	12.2	1.86E-22	TRUE	TRUE	9	7.325791148	6	4	3	3	1	0.674208852	NA	5	NA	3	NA	0.325791148	2.748003992	0.916001331	3	1.480260702	1.480260702	1	2.187411178	1.093705589	2	1.719921959	0.859960979	2	4	3	1	1	2.53E-28	3.71E-75	0.0000403	9.51E-31	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	9	76691634	A	C	-	-	-	-	-	-	40	0	0	25	9	36	27	1	3.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	1.437125749	1.437125749	1	0.398561404	0.398561404	1	NA	NA	0	NA	NA	1	4	NA	1	1	3.71E-15	1	0.126579904	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	76707286	C	T	-	-	-	-	-	-	52	0	0	46	14	30.4	47	7	14.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	5.626372055	2	3	2	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	1.821572854	0.910786427	2	1.84734698	1.84734698	1	NA	NA	0	NA	NA	0	4	NA	1	1	1.26E-21	1	4.12E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	76781129	A	G	ROBO2	ENST00000487694	r.?	-	-	intronic	54	0	0	39	10	25.6	47	4	8.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	1.368614085	1.368614085	1	1.000614035	1.000614035	1	NA	NA	0	NA	NA	1	4	NA	1	1	5.44E-15	1	0.0000939	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	76789275	T	C	-	-	-	-	-	-	46	0	0	52	19	36.5	32	7	21.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.187085828	1.093542914	2	2.359052632	1.179526316	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.24E-30	1	2.36E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	76806053	C	T	-	-	-	-	-	-	35	0	0	35	5	14.3	35	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0.713858283	0.713858283	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	0.000000895	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	76881129	A	G	ESRRB	CCDS9850.1	r.?	-	-	intronic	20	0	0	30	11	36.7	29	6	20.7	1	0	0	0	0	NA	0	0	NA	1	TRUE	FALSE	2	3	2	3	0	0	1	1	NA	NA	NA	NA	NA	NA	1.46506986	1.46506986	1	2.022789474	2.022789474	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.44E-18	1	6.72E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	76909318	T	A	ROBO2	ENST00000487694	r.?	-	-	intronic	36	0	0	42	10	23.8	26	1	3.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	1.272383408	1.272383408	1	0.447333333	0.447333333	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.24E-14	1	0.122190858	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	76918806	G	C	-	-	-	-	-	-	31	0	0	35	15	42.9	26	6	23.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.57057485	1.285287425	2	2.488315789	1.244157895	2	NA	NA	1	NA	NA	1	4	NA	1	1	9.02E-26	1	3.30E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	76979095	A	G	VDAC2	CCDS7348.1	r.550a>g	c.337A>G	p.T113A	missense	45	0	0	129	20	15.5	68	5	7.4	123	0	0	618	87	14.1	369	43	11.7	1.28E-31	TRUE	TRUE	9	7.325791148	6	4	3	3	1	0.674208852	NA	5	NA	3	NA	0.325791148	1.703762475	0.851881238	2	1.043231352	1.043231352	1	1.549874251	0.774937126	2	1.649433354	0.824716677	2	4	3	1	1	8.03E-24	2.51E-94	0.0000251	7.20E-44	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	12	77012178	G	A	-	-	-	-	-	-	51	0	0	30	13	43.3	33	7	21.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	2.161542914	1.080771457	2	2.071649123	1.035824561	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.35E-22	1	2.98E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	77053739	T	C	-	-	-	-	-	-	73	0	0	32	15	46.9	32	4	12.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.872255489	0.936127745	2	1.096491228	1.096491228	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.59E-26	1	0.0000201	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	87936301	G	T	GRID1	CCDS31236.1	r.?	-	-	intronic	48	0	0	32	10	31.2	27	1	3.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.245508982	1.245508982	1	0.324561404	0.324561404	1	NA	NA	1	NA	NA	1	4	NA	1	1	5.70E-16	1	0.126579904	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	77067906	G	T	-	-	-	-	-	-	62	0	0	45	5	11.1	30	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.665113772	0.665113772	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.00000323	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	77074336	G	T	-	-	-	-	-	-	32	0	0	33	10	30.3	32	1	3.1	54	0	0	333	41	12.3	305	18	5.9	3.22E-09	FALSE	TRUE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.512580838	1.512580838	1	0.291180552	NA	0	0.614017964	0.614017964	1	0.554182341	0.892415747	0.620991218	NA	3	1	1	8.14E-16	6.57E-43	0.14819814	4.78E-14	YES	1_1	0_1	somatic	custom.pulldown.HiSeq
PD9852b	2	77086058	C	A	LRRTM4	CCDS46346.1	r.?	-	-	intronic	59	0	0	52	11	21.2	30	1	3.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.270307385	1.270307385	1	0.355473684	0.355473684	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.44E-15	1	0.139615808	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	77094244	T	C	-	-	-	-	-	-	31	0	0	39	8	20.5	37	3	8.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.023363273	1.023363273	1	0.791526316	0.791526316	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.09E-11	1	0.000855237	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	77104344	T	C	-	-	-	-	-	-	49	0	0	58	13	22.4	39	6	15.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	1.790211577	0.895105788	2	1.966877193	1.966877193	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.12E-18	1	4.43E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	77119809	T	A	-	-	-	-	-	-	63	0	0	37	4	10.8	28	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	0.539137725	0.539137725	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	0.0000362	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	77129362	G	A	-	-	-	-	-	-	10	0	0	37	14	37.8	21	4	19	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.886982036	0.943491018	2	1.784654998	1.784654998	1	NA	NA	1	NA	NA	0	4	NA	1	1	3.35E-23	1	0.00000349	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	77155581	C	T	-	-	-	-	-	-	57	0	0	37	5	13.5	47	6	12.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.808922156	0.808922156	1	1.378807018	1.378807018	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.00000119	1	0.000000141	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	103965020	G	A	-	-	-	-	-	-	24	0	0	27	12	44.4	19	7	36.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.77245509	0.886227545	2	3.228070175	1.614035088	2	NA	NA	1	NA	NA	1	4	NA	1	1	3.96E-21	1	3.73E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	108468823	T	C	SORCS1	CCDS7559.1	r.?	-	-	intronic	42	0	0	45	34	75.6	41	14	34.1	0	0	NA	1	1	100	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	3.017964072	1.508982036	2	2.99122807	1.495614035	2	3.992015968	3.992015968	1	NA	NA	1	4	NA	1	1	5.60E-69	0.005	1.90E-22	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	118962906	G	A	KCNK18	CCDS7598.1	r.?	-	-	intronic	31	0	0	36	12	33.3	25	2	8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.329341317	1.329341317	1	0.701754386	0.701754386	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.73E-19	1	0.006948068	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	77247551	G	C	-	-	-	-	-	-	32	0	0	31	8	25.8	25	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.02994012	1.02994012	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	2.78E-12	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	77334875	C	A	RSBN1L	CCDS43607.1	r.?	-	-	intronic	32	0	0	49	5	10.2	22	2	9.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	0.815185629	0.815185629	1	1.162245614	1.162245614	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.00000496	1	0.005403392	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	77336621	G	T	LRRTM4	CCDS46346.1	r.?	-	-	intronic	59	0	0	55	5	9.1	27	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.545273453	0.545273453	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.00000883	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	77366789	G	A	RSF1	CCDS8253.1	r.?	-	-	downstream	37	0	0	31	14	45.2	44	9	20.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.673496181	2	2	1	0	1	0.326503819	NA	2	NA	1	NA	0.673496181	2.256391218	1.128195609	2	1.936312331	0.968156166	2	NA	NA	1	NA	NA	0	4	NA	1	1	1.49E-24	1	1.18E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	17	77427064	G	C	ENSG00000167281	CCDS45805.1	r.?	-	-	intronic	34	0	0	25	5	20	23	3	13	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5.714370929	6.213584959	5	5	0	1	0.285629071	0.786415041	5	5	1	2	0.714370929	0.213584959	1.541277379	1.541277379	1	1.688116922	1.688116922	1	NA	NA	0	NA	NA	0	4	NA	1	1	0.000000153	1	0.000205387	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	17	77429445	C	T	ENSG00000167281	CCDS45805.1	r.?	-	-	intronic	19	0	0	19	12	63.2	9	3	33.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5.714370929	6.213584959	5	5	0	1	0.285629071	0.786415041	5	5	1	2	0.714370929	0.213584959	4.870436519	0.974087304	5	4.324176423	1.081044106	4	NA	NA	0	NA	NA	1	4	NA	1	1	1.19E-23	1	0.0000103	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	17	77445480	C	T	ENSG00000167281	CCDS45805.1	r.?	-	-	intronic	15	0	0	47	33	70.2	26	12	46.2	234	0	0	43	26	60.5	54	14	25.9	2.23E-16	TRUE	TRUE	5.714370929	6.213584959	5	5	0	1	0.285629071	0.786415041	5	5	1	2	0.714370929	0.213584959	5.409883602	1.08197672	5	5.99930783	1.199861566	5	4.662364073	0.932472815	5	3.363248329	0.888240801	3.786415041	4	3	1	1	3.72E-65	5.78E-49	2.21E-21	1.64E-20	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	17	77445512	A	T	ENSG00000167281	CCDS45805.1	r.?	-	-	intronic	22	0	0	45	34	75.6	20	8	40	221	0	0	46	25	54.3	53	11	20.8	5.18E-12	TRUE	TRUE	5.714370929	6.213584959	5	5	0	1	0.285629071	0.786415041	5	5	1	2	0.714370929	0.213584959	5.826028494	1.165205699	5	5.194205913	1.038841183	5	4.184568085	0.976418634	4.285629071	2.700987075	0.969341263	2.786415041	4	3	1	1	5.60E-69	1.87E-45	4.66E-14	3.07E-15	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	7	77493656	A	G	PHTF2	CCDS47622.1	r.?	-	-	intronic	43	0	0	55	14	25.5	33	6	18.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	2.037964072	1.018982036	2	2.324491228	1.162245614	2	NA	NA	1	NA	NA	1	4	NA	1	1	2.19E-20	1	1.54E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	123431287	T	C	-	-	-	-	-	-	35	0	0	35	7	20	26	3	11.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.798403194	0.798403194	1	1.00877193	1.00877193	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.65E-10	1	0.000298167	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	77589327	C	T	SHROOM3	CCDS3579.2	r.?	-	-	intronic	19	0	0	25	11	44	20	4	20	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	2.196487026	1.098243513	2	1.817068651	1.817068651	1	NA	NA	1	NA	NA	0	4	NA	1	1	2.04E-19	1	0.00000284	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	133132590	G	C	-	-	-	-	-	-	47	0	0	35	9	25.7	27	1	3.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.025948104	1.025948104	1	0.324561404	0.324561404	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.23E-13	1	0.126579904	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	77659133	A	C	PIGK	CCDS674.1	r.?	-	-	intronic	49	0	0	47	11	23.4	29	4	13.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.168131737	1.168131737	1	1.624526316	1.624526316	1	NA	NA	0	NA	NA	1	4	NA	1	1	7.21E-16	1	0.0000134	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	77742356	T	C	ZFHX4	CCDS47878.1	r.?	-	-	intronic	36	0	0	45	15	33.3	15	1	6.7	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.662341317	0.831170659	2	0.62932571	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	9.14E-24	1	0.072431031	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	77753798	C	A	-	-	-	-	-	-	55	0	0	37	10	27	20	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.077844311	1.077844311	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	3.01E-15	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	77766620	C	T	-	-	-	-	-	-	52	0	0	34	8	23.5	38	6	15.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	1.256344961	1.256344961	1	1.859964912	1.859964912	1	NA	NA	0	NA	NA	1	4	NA	1	1	6.32E-12	1	3.76E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	77788997	T	C	-	-	-	-	-	-	58	0	0	33	14	42.4	34	5	14.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1.38822692	1.304475247	1	1	0	0	0.61177308	0.695524753	2	2	0	0	0.38822692	0.304475247	1.433222985	1.433222985	1	1.187231546	1.187231546	1	NA	NA	1	NA	NA	0	4	NA	1	1	4.57E-24	1	0.000000771	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	77791820	C	T	MAGI2	CCDS5594.1	r.?	-	-	intronic	22	0	0	40	15	37.5	29	11	37.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	2.997005988	0.999001996	3	4.840561404	1.210140351	4	NA	NA	1	NA	NA	1	4	NA	1	1	1.09E-24	1	1.56E-18	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	135153970	C	T	CALY	CCDS7678.1	r.?	-	-	upstream	29	0	0	35	12	34.3	15	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.369261477	1.369261477	1	0	0	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.83E-19	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	77826042	A	C	LHFPL2	CCDS4042.1	r.?	-	-	intronic	57	0	0	48	8	16.7	27	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.000666667	1.000666667	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	1.23E-10	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	77876743	A	T	-	-	-	-	-	-	40	0	0	44	13	29.5	33	6	18.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.767644711	0.883822355	2	1.960491228	1.960491228	1	NA	NA	1	NA	NA	1	4	NA	1	1	5.49E-20	1	1.54E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	77888469	C	A	-	-	-	-	-	-	46	0	0	38	13	34.2	23	2	8.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	1.82838288	0.91419144	2	1.024157895	1.024157895	1	NA	NA	0	NA	NA	1	4	NA	1	1	5.88E-21	1	0.00589844	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	10583735	G	T	LYVE1	CCDS7804.1	r.?	-	-	intronic	50	0	0	50	5	10	34	3	8.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	3	2	2	2	1	1	1	NA	NA	NA	NA	NA	NA	0.599201597	0.599201597	1	0.859929825	0.859929825	1	NA	NA	1	NA	NA	0	4	NA	1	1	0.00000549	1	0.000666058	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	17	77961148	C	T	TBC1D16	CCDS11766.1	r.?	-	-	intronic	27	0	0	52	22	42.3	38	5	13.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	10	8.273015789	9	7	1	1	1	0.726984211	NA	7	NA	2	NA	0.273015789	5.072622754	1.014524551	5	1.985932821	1.985932821	1	NA	NA	1	NA	NA	0	4	NA	1	1	5.59E-37	1	0.00000137	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	77976548	G	A	VAT1L	CCDS32492.1	r.?	-	-	intronic	35	0	0	53	7	13.2	34	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5	5.626372055	3	3	2	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	0.922946108	0.922946108	1	0	0	1	NA	NA	1	NA	NA	0	3	NA	1	1	9.85E-09	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	77980386	T	C	-	-	-	-	-	-	56	0	0	53	20	37.7	35	5	14.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.25899002	1.12949501	2	1.540385965	1.540385965	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.65E-32	1	0.000000895	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	78078910	G	A	-	-	-	-	-	-	62	0	0	41	10	24.4	37	2	5.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.218051896	1.218051896	1	0.527684211	0.527684211	1	NA	NA	1	NA	NA	1	4	NA	1	1	9.51E-15	1	0.014826063	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	78091558	C	A	-	-	-	-	-	-	44	0	0	55	15	27.3	42	3	7.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.362820359	1.362820359	1	0.693807018	0.693807018	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.01E-22	1	0.001240292	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	78108484	C	T	-	-	-	-	-	-	25	0	0	28	11	39.3	12	6	50	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	3	2	3	0	0	1	1	NA	NA	NA	NA	NA	NA	1.568862275	1.568862275	1	4.885964912	1.628654971	3	NA	NA	0	NA	NA	1	4	NA	1	1	9.70E-19	1	1.41E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	12253696	G	T	MICAL2	CCDS7809.1	r.?	-	-	intronic	40	0	0	46	14	30.4	21	6	28.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	3	2	2	2	1	1	1	NA	NA	NA	NA	NA	NA	1.821572854	0.910786427	2	2.79477193	1.397385965	2	NA	NA	1	NA	NA	0	4	NA	1	1	1.26E-21	1	7.95E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	78138283	G	A	-	-	-	-	-	-	47	0	0	47	14	29.8	41	5	12.2	153	0	0	301	38	12.6	352	24	6.8	4.03E-13	TRUE	TRUE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.487620758	1.487620758	1	1.145936367	1.145936367	1	0.628994012	0.628994012	1	0.638718631	1.028546963	0.620991218	4	3	1	1	1.79E-21	2.58E-40	0.00000202	1.17E-19	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	5	78140154	T	C	ARSB	CCDS4043.1	r.?	-	-	intronic	64	0	0	59	22	37.3	43	11	25.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.235021956	1.117510978	2	2.757614035	1.378807018	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.79E-35	1	2.42E-16	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	78143366	T	C	-	-	-	-	-	-	46	0	0	35	18	51.4	30	4	13.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	2.747920469	1.373960234	2	1.565666667	1.565666667	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.60E-32	1	0.0000154	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	78161861	A	G	USP33	CCDS678.1	r.3970u>c	c.?	p.?	3'UTR variant	55	0	0	35	8	22.9	26	3	11.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.143171657	1.143171657	1	1.35377193	1.35377193	1	NA	NA	0	NA	NA	1	4	NA	1	1	8.15E-12	1	0.000298167	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	78176869	C	T	-	-	-	-	-	-	41	0	0	39	7	17.9	36	3	8.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	0.95696063	0.95696063	1	0.977070175	0.977070175	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.04E-09	1	0.000788827	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	15165914	G	T	INSC	CCDS41621.1	r.?	-	-	intronic	53	0	0	29	8	27.6	28	5	17.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.377796407	1.377796407	1	1.749175439	1.749175439	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.53E-12	1	0.000000279	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	78228290	G	A	MAGI2	CCDS5594.1	r.?	-	-	intronic	66	0	0	75	16	21.3	46	7	15.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	1.702299401	0.851149701	2	1.941333333	1.941333333	1	NA	NA	1	NA	NA	1	4	NA	1	1	9.88E-22	1	3.53E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	17	78249570	T	G	RNF213	CCDS11772.1	r.?	-	-	intronic	24	0	0	40	31	77.5	27	7	25.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	10	8.273015789	9	7	1	1	1	0.726984211	NA	7	NA	2	NA	0.273015789	9.293812375	1.032645819	9	3.896640914	0.974160228	4	NA	NA	0	NA	NA	0	4	NA	1	1	1.22E-63	1	6.36E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	22767955	C	A	GAS2	CCDS7858.1	r.?	-	-	intronic	83	0	0	53	21	39.6	31	8	25.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.976838323	0.988419162	2	2.521157895	1.260578947	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.30E-34	1	2.78E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	17	78250898	G	C	RNF213	CCDS11772.1	r.?	-	-	intronic	24	0	0	50	5	10	34	3	8.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	10	8.273015789	9	7	1	1	1	0.726984211	NA	7	NA	2	NA	0.273015789	1.199201597	1.199201597	1	1.323955214	1.323955214	1	NA	NA	1	NA	NA	0	4	NA	1	1	0.00000549	1	0.000666058	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	78251588	T	A	-	-	-	-	-	-	62	0	0	52	17	32.7	38	4	10.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	1.748190648	1.062169932	1.645867197	1.236052632	1.236052632	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.42E-26	1	0.0000403	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	78270743	C	A	-	-	-	-	-	-	52	0	0	46	11	23.9	31	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.954091816	0.954091816	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	5.55E-16	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	78361795	G	A	-	-	-	-	-	-	55	0	0	44	11	25	30	2	6.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.498003992	1.498003992	1	0.721719298	0.721719298	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.22E-16	1	0.009909649	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	23526241	C	T	-	-	-	-	-	-	47	0	0	37	13	35.1	32	4	12.5	0	0	NA	0	0	NA	2	0	0	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.752197605	0.876098802	2	1.221491228	1.221491228	1	NA	NA	1	0	0	1	4	NA	1	1	3.89E-21	1	0.0000201	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	78375472	G	T	WWOX	CCDS42196.1	r.?	-	-	intronic	24	0	0	26	20	76.9	16	5	31.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	5.626372055	3	3	3	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	6.145860279	2.048620093	3	3.868270187	1.289423396	3	NA	NA	1	NA	NA	0	4	NA	1	1	2.13E-41	1	0.000000013	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	23954647	T	A	-	-	-	-	-	-	57	0	0	48	12	25	29	1	3.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.248003992	1.248003992	1	0.332245614	0.332245614	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.44E-17	1	0.135292269	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	26204520	C	A	-	-	-	-	-	-	63	0	0	42	14	33.3	35	9	25.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.662341317	0.831170659	2	2.511385965	1.255692982	2	NA	NA	1	NA	NA	1	4	NA	1	1	2.83E-22	1	1.23E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	78473129	T	A	-	-	-	-	-	-	48	0	0	95	6	6.3	39	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	9	7.325791148	6	4	3	3	1	0.674208852	NA	5	NA	3	NA	0.325791148	0.692497006	0.692497006	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	0.00000928	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	78479678	G	A	-	-	-	-	-	-	46	0	0	32	12	37.5	36	2	5.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.872005988	0.936002994	2	0.526003578	0.526003578	1	NA	NA	1	NA	NA	0	4	NA	1	1	5.03E-20	1	0.014070883	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	78520263	A	G	-	-	-	-	-	-	38	0	0	89	38	42.7	46	11	23.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	9	7.325791148	6	4	3	3	1	0.674208852	NA	5	NA	3	NA	0.325791148	4.693590818	0.938718164	5	3.369355312	1.013098888	3.325791148	NA	NA	1	NA	NA	0	4	NA	1	1	5.77E-63	1	5.55E-16	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	78526386	T	C	-	-	-	-	-	-	47	0	0	49	17	34.7	32	5	15.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.079229541	1.03961477	2	1.680421053	1.680421053	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.26E-27	1	0.000000562	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	78609579	G	A	WWOX	CCDS42196.1	r.?	-	-	intronic	51	0	0	45	9	20	41	6	14.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	5.626372055	3	3	3	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	1.598403194	1.598403194	1	1.810152074	1.810152074	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.47E-12	1	6.05E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	78663333	G	A	-	-	-	-	-	-	56	0	0	35	7	20	50	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0.998403194	0.998403194	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	4.65E-10	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	78721795	G	C	AC128707.1	ENST00000511128	r.?	-	-	intronic	48	0	0	45	4	8.9	37	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.444289421	0.444289421	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.0000791	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	32044942	C	A	-	-	-	-	-	-	35	1	2.9	45	14	31.1	30	3	10	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.552516966	0.776258483	2	0.977192982	0.977192982	1	NA	NA	1	NA	NA	1	4	NA	0.16091139	1	8.81E-22	1	0.000458697	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	78750255	A	T	-	-	-	-	-	-	59	0	0	27	12	44.4	18	3	16.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1.38822692	1.304475247	1	1	0	0	0.61177308	0.695524753	2	2	0	0	0.38822692	0.304475247	1.500827843	1.500827843	1	1.348759647	1.348759647	1	NA	NA	0	NA	NA	1	4	NA	1	1	3.96E-21	1	0.0000964	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	78759844	C	A	-	-	-	-	-	-	50	0	0	30	4	13.3	25	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.530938124	0.530938124	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.0000154	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	78803547	C	A	AGPHD1	CCDS42063.1	r.?	-	-	intronic	66	0	0	41	7	17.1	33	1	3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3.293619843	2	2	1	1	1	0.706380157	NA	3	NA	1	NA	0.293619843	0.853634731	0.853634731	1	0.30196649	0.30196649	1	NA	NA	0	NA	NA	0	4	NA	1	1	1.51E-09	1	0.15245715	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	78818286	C	A	KCNMA1	CCDS7352.1	r.?	-	-	intronic	54	0	0	84	21	25	40	6	15	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	9	7.325791148	6	4	3	3	1	0.674208852	NA	5	NA	3	NA	0.325791148	2.748003992	0.916001331	3	2.114658146	2.114658146	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.15E-29	1	5.18E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	78839793	A	C	-	-	-	-	-	-	49	0	0	60	21	35	33	5	15.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.097205589	1.048602794	2	1.637333333	1.637333333	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.16E-33	1	0.00000066	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	78870123	G	C	-	-	-	-	-	-	62	0	0	45	13	28.9	33	7	21.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.731692615	0.865846307	2	2.283649123	1.141824561	2	NA	NA	1	NA	NA	1	4	NA	1	1	7.68E-20	1	2.98E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	78915653	C	A	KCNMA1	CCDS7352.1	r.?	-	-	intronic	31	0	0	71	5	7	40	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	9	7.325791148	6	4	3	3	1	0.674208852	NA	5	NA	3	NA	0.325791148	0.769441118	0.769441118	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	0.0000309	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	78997040	G	A	WWOX	CCDS42196.1	r.?	-	-	intronic	55	0	0	56	10	17.9	42	2	4.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	5.626372055	3	3	3	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	1.430570858	1.430570858	1	0.59511849	0.59511849	1	NA	NA	1	NA	NA	0	4	NA	1	1	2.82E-13	1	0.018854633	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	78999238	C	G	CMYA5	CCDS47238.1	r.?	-	-	intronic	40	0	0	41	15	36.6	41	6	14.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.193077844	1.096538922	2	1.572701754	1.572701754	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.71E-24	1	6.05E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	79083659	G	A	WWOX	CCDS42196.1	r.?	-	-	intronic	21	0	0	41	7	17.1	35	1	2.9	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	6	5.626372055	3	3	3	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	1.366634731	1.366634731	1	0.359550755	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	1.51E-09	1	0.16091139	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	79104349	C	T	-	-	-	-	-	-	32	0	0	31	21	67.7	38	11	28.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	3.37959481	1.689797405	2	2.714554181	1.357277091	2	NA	NA	1	NA	NA	0	4	NA	1	1	2.02E-41	1	5.19E-17	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	37346531	C	A	-	-	-	-	-	-	40	0	0	37	5	13.5	37	2	5.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.673922156	0.673922156	1	0.527684211	0.527684211	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.00000119	1	0.014826063	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	41729157	A	G	-	-	-	-	-	-	45	0	0	50	13	26	35	3	8.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.297924152	1.297924152	1	0.840385965	0.840385965	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.65E-19	1	0.000725791	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	79191862	C	A	-	-	-	-	-	-	68	0	0	30	5	16.7	24	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1.664642839	1.304475247	1	1	0	0	0.335357161	0.695524753	1	2	1	0	0.664642839	0.304475247	0.610662021	0.610662021	1	0	0	1	NA	NA	0	NA	NA	0	3	NA	1	1	0.000000401	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	79241031	A	G	-	-	-	-	-	-	47	1	2.1	58	35	60.3	44	11	25	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	4.819185629	1.204796407	4	3.192982456	1.064327485	3	NA	NA	1	NA	NA	1	4	NA	0.209895027	1	2.29E-65	1	3.22E-16	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	79259289	C	T	-	-	-	-	-	-	57	0	0	34	17	50	30	10	33.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.996007984	0.998003992	2	2.921052632	1.460526316	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.64E-30	1	2.68E-16	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	104677393	A	G	MLL5	CCDS34723.1	r.?	-	-	intronic	47	0	0	50	14	28	44	7	15.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.677764471	0.838882236	2	1.712736842	1.712736842	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.84E-21	1	2.55E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	79294532	A	T	-	-	-	-	-	-	59	0	0	50	10	20	33	1	3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	0.998403194	0.998403194	1	0.353157895	0.353157895	1	NA	NA	0	NA	NA	1	4	NA	1	1	8.36E-14	1	0.15245715	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	79305932	G	C	KCNMA1	CCDS7352.1	r.?	-	-	intronic	29	0	0	84	10	11.9	39	2	5.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	9	7.325791148	6	4	3	3	1	0.674208852	NA	5	NA	3	NA	0.325791148	1.3080499	1.3080499	1	0.71898377	0.71898377	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.93E-11	1	0.016387522	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	79345979	T	G	-	-	-	-	-	-	51	0	0	78	26	33.3	45	2	4.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	2.661341317	0.887113772	3	0.561964912	0.561964912	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.04E-40	1	0.021467209	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	17	79354274	C	A	-	-	-	-	-	-	12	0	0	22	9	40.9	9	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	10	8.273015789	9	7	1	1	1	0.726984211	NA	7	NA	2	NA	0.273015789	4.904734531	0.980946906	5	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	9.16E-16	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	46746536	G	T	F2	CCDS31476.1	r.?	-	-	intronic	37	0	0	49	18	36.7	30	5	16.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.83206986	0.91603493	2	1.631912281	1.631912281	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.80E-29	1	0.000000401	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	79382239	A	C	REG3A	CCDS1965.1	r.?	-	-	downstream	45	0	0	51	21	41.2	37	6	16.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	4	4	2	2	2	1	1	NA	NA	NA	NA	NA	NA	3.292710579	1.097570193	3	1.745052632	1.745052632	1	NA	NA	1	NA	NA	0	4	NA	1	1	4.73E-35	1	3.18E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	17	79439256	T	C	-	-	-	-	-	-	18	0	0	29	11	37.9	24	4	16.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	10	8.273015789	9	7	1	1	1	0.726984211	NA	7	NA	2	NA	0.273015789	4.544974052	0.90899481	5	2.512505917	2.512505917	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.56E-18	1	0.00000613	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	47692793	G	A	AGBL2	CCDS7944.1	r.?	-	-	intronic	24	0	0	45	10	22.2	29	3	10.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.108227545	1.108227545	1	1.006508772	1.006508772	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.66E-14	1	0.000414371	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	79443136	C	T	-	-	-	-	-	-	47	0	0	75	6	8	45	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	9	7.325791148	5	4	4	3	1	0.674208852	NA	5	NA	3	NA	0.325791148	0.879361277	0.879361277	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	0.00000234	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	79449818	G	C	-	-	-	-	-	-	47	0	0	67	8	11.9	47	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	0.9510499	0.9510499	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	1.96E-09	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	79450634	T	A	-	-	-	-	-	-	40	0	0	93	17	18.3	42	9	21.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	9	7.325791148	5	4	4	3	1	0.674208852	NA	5	NA	3	NA	0.325791148	2.011538922	1.005769461	2	3.016912288	1.005637429	3	NA	NA	1	NA	NA	0	4	NA	1	1	9.19E-22	1	7.51E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	79459339	G	T	NRXN3	CCDS9870.1	r.?	-	-	intronic	42	0	0	24	13	54.2	27	4	14.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	3	2	3	0	0	1	1	NA	NA	NA	NA	NA	NA	2.163672655	1.081836327	2	1.446245614	1.446245614	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.90E-24	1	0.00001	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	79467920	C	T	-	-	-	-	-	-	61	0	0	40	12	30	32	4	12.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.673496181	2	2	1	0	1	0.326503819	NA	2	NA	1	NA	0.673496181	1.49760479	1.49760479	1	1.180678251	1.180678251	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.20E-18	1	0.0000201	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	79480739	T	C	-	-	-	-	-	-	41	0	0	35	17	48.6	29	10	34.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3.293619843	2	2	1	1	1	0.706380157	NA	3	NA	1	NA	0.293619843	2.42611976	1.21305988	2	3.472614635	1.514032348	2.293619843	NA	NA	0	NA	NA	1	4	NA	1	1	3.18E-30	1	1.79E-16	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	79489760	T	C	PKIA	CCDS6222.1	r.?	-	-	intronic	53	0	0	40	8	20	36	6	16.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0.998403194	0.998403194	1	1.568617814	1.568617814	1	NA	NA	1	NA	NA	0	4	NA	1	1	2.61E-11	1	2.68E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	79515989	C	T	-	-	-	-	-	-	40	0	0	78	8	10.3	42	3	7.1	0	0	NA	0	0	NA	2	0	0	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	0.823177645	0.823177645	1	0.906807018	0.906807018	1	NA	NA	1	0	0	1	4	NA	1	1	6.71E-09	1	0.001240292	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	79524542	C	T	-	-	-	-	-	-	59	0	0	72	16	22.2	61	13	21.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	1.774227545	0.887113772	2	2.720421053	0.906807018	3	NA	NA	1	NA	NA	1	4	NA	1	1	4.82E-22	1	6.41E-18	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	47955039	G	A	-	-	-	-	-	-	23	0	0	37	8	21.6	28	3	10.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.078275449	1.078275449	1	1.045596491	1.045596491	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.33E-11	1	0.000372895	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	79541088	A	G	-	-	-	-	-	-	42	0	0	69	7	10.1	41	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5	5	3	3	2	2	1	1	NA	NA	NA	NA	NA	NA	0.706193613	0.706193613	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	6.43E-08	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	49055285	G	A	ENSG00000182053	ENST00000332682	r.?	-	-	intronic	49	0	0	42	9	21.4	32	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.068291417	1.068291417	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	7.51E-13	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	79593563	T	C	ROBO1	ENST00000464233	r.?	-	-	intronic	51	0	0	58	18	31	36	3	8.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	1.657306119	1.006950088	1.645867197	0.977070175	0.977070175	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.42E-27	1	0.000788827	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	79605736	C	T	DLG5	CCDS7353.2	r.?	-	-	intronic	23	0	0	64	10	15.6	29	4	13.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	9	7.325791148	5	4	4	3	1	0.674208852	NA	5	NA	3	NA	0.325791148	1.714754491	1.714754491	1	1.945485494	1.945485494	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.16E-12	1	0.0000134	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	79640293	C	A	SYT1	CCDS9017.1	r.?	-	-	intronic	46	0	0	35	7	20	33	1	3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.998403194	0.998403194	1	0.293157895	0.293157895	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.65E-10	1	0.15245715	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	79641858	G	C	-	-	-	-	-	-	42	0	0	31	10	32.3	23	4	17.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.673496181	2	2	1	0	1	0.326503819	NA	2	NA	1	NA	0.673496181	1.612421158	1.612421158	1	1.643504125	1.643504125	1	NA	NA	1	NA	NA	0	4	NA	1	1	3.94E-16	1	0.00000513	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	79646108	G	A	-	-	-	-	-	-	49	0	0	28	5	17.9	25	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1	1.304475247	1	1	0	0	1	0.695524753	NA	2	NA	0	NA	0.304475247	0.535570858	0.535570858	1	0	0	1	NA	NA	0	NA	NA	0	3	NA	1	1	0.000000279	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	79663396	T	A	CTNNA2	CCDS42703.2	r.?	-	-	intronic	48	0	0	66	17	25.8	48	9	18.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	4	4	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.06194012	1.03097006	2	2.025122807	1.012561404	2	NA	NA	1	NA	NA	0	4	NA	1	1	1.52E-24	1	2.75E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	79704497	A	T	SYT1	CCDS9017.1	r.?	-	-	intronic	43	0	0	27	5	18.5	18	1	5.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.923522954	0.923522954	1	0.54722807	0.54722807	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.00000023	1	0.086275114	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	79752195	C	A	SYT1	CCDS9017.1	r.?	-	-	intronic	60	0	0	55	9	16.4	29	2	6.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.818690619	0.818690619	1	0.674263158	0.674263158	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.01E-11	1	0.009279585	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	79757039	C	A	ZFYVE16	CCDS4050.1	r.?	-	-	intronic	48	1	2.1	42	10	23.8	31	8	25.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.4260998	1.4260998	1	2.779157895	1.389578947	2	NA	NA	1	NA	NA	1	4	NA	0.213845552	1	1.24E-14	1	2.78E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	79822123	C	T	-	-	-	-	-	-	41	0	0	36	9	25	30	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1	1.304475247	1	1	0	0	1	0.695524753	NA	2	NA	0	NA	0.304475247	0.748003992	0.748003992	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	1.63E-13	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	79840146	A	C	SYT1	CCDS9017.1	r.?	-	-	intronic	48	0	0	32	14	43.8	31	7	22.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	2.186502994	1.093251497	2	2.20845614	1.10422807	2	NA	NA	1	NA	NA	1	4	NA	1	1	2.65E-24	1	1.85E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	79842112	G	C	-	-	-	-	-	-	46	0	0	26	15	57.7	32	2	6.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.303393214	1.151696607	2	0.543859649	0.543859649	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.24E-28	1	0.011224977	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	79857064	T	A	NRXN3	CCDS45145.1	r.?	-	-	intronic	47	0	0	42	7	16.7	40	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	3	2	3	0	0	1	1	NA	NA	NA	NA	NA	NA	0.666666667	0.666666667	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	1.81E-09	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	55223929	A	T	-	-	-	-	-	-	59	0	0	37	10	27	31	3	9.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.347844311	1.347844311	1	0.947877193	0.947877193	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.01E-15	1	0.000505952	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	79927809	T	C	HMGN3	CCDS4988.1	r.?	-	-	intronic	51	0	0	30	11	36.7	31	5	16.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.46506986	1.46506986	1	1.412280702	1.412280702	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.44E-18	1	0.000000476	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	79979704	C	T	CTNNA2	CCDS42703.2	r.?	-	-	intronic	48	0	0	54	12	22.2	46	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.330227545	1.330227545	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	6.90E-17	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	80022421	G	A	CTNNA2	CCDS42703.2	r.?	-	-	intronic	50	0	0	46	13	28.3	37	5	13.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.695740519	0.847870259	2	1.454210526	1.454210526	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.07E-19	1	0.00000119	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	80053102	G	T	MSH3	CCDS34195.1	r.?	-	-	intronic	48	0	0	53	11	20.8	40	5	12.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.246339321	1.246339321	1	1.346491228	1.346491228	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.07E-15	1	0.00000178	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	80092421	T	A	-	-	-	-	-	-	32	0	0	40	16	40	30	6	20	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3.293619843	2	2	1	1	1	0.706380157	NA	3	NA	1	NA	0.293619843	1.996806387	0.998403194	2	2.013109933	2.013109933	1	NA	NA	1	NA	NA	1	4	NA	1	1	8.56E-27	1	8.37E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	80140428	A	G	-	-	-	-	-	-	48	0	0	52	19	36.5	22	7	31.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	5.626372055	3	3	3	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	2.917085828	0.972361943	3	3.942659998	1.314219999	3	NA	NA	1	NA	NA	0	4	NA	1	1	1.24E-30	1	1.25E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	17	80156662	C	T	CCDC57	ENST00000445854	r.?	-	-	intronic	22	0	0	55	9	16.4	26	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	10	8.273015789	9	7	1	1	1	0.726984211	NA	7	NA	2	NA	0.273015789	1.966690619	0.983345309	2	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	1.01E-11	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	80167047	G	C	CD36	CCDS34673.1	r.?	-	-	intronic	50	0	0	72	17	23.6	43	7	16.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	1.886115768	0.943057884	2	2.081824561	1.040912281	2	NA	NA	1	NA	NA	1	4	NA	1	1	7.97E-24	1	2.15E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	80193587	G	A	CD36	CCDS34673.1	r.?	-	-	intronic	33	0	0	76	40	52.6	34	12	35.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	4.203800399	1.0509501	4	4.508491228	1.127122807	4	NA	NA	1	NA	NA	1	4	NA	1	1	4.74E-71	1	1.21E-19	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	80238234	G	A	-	-	-	-	-	-	22	0	0	19	11	57.9	11	2	18.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1	1.304475247	1	1	0	0	1	0.695524753	NA	2	NA	0	NA	0.304475247	1.732377246	1.732377246	1	1.469905723	1.469905723	1	NA	NA	1	NA	NA	0	4	NA	1	1	3.56E-21	1	0.001334363	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	65956848	T	A	PACS1	CCDS8129.1	r.?	-	-	intronic	58	0	0	36	6	16.7	35	6	17.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.833666667	0.833666667	1	1.671	1.671	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.68E-08	1	2.24E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	80295756	A	C	-	-	-	-	-	-	36	0	0	45	4	8.9	24	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.673496181	2	2	1	0	1	0.326503819	NA	2	NA	1	NA	0.673496181	0.444289421	0.444289421	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	0.0000791	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	17	80309867	A	C	-	-	-	-	-	-	19	0	0	52	4	7.7	15	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	10	8.273015789	9	7	1	1	1	0.726984211	NA	7	NA	2	NA	0.273015789	0.92338523	0.92338523	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	0.000139698	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	80330036	C	T	-	-	-	-	-	-	54	0	0	30	5	16.7	29	1	3.4	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.673496181	2	2	1	0	1	0.326503819	NA	2	NA	1	NA	0.673496181	0.833666667	0.833666667	1	0.321144484	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	0.000000401	1	0.135292269	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	105102142	A	G	PUS7	CCDS34725.1	r.?	-	-	intronic	57	0	0	51	20	39.2	39	11	28.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.348870259	1.17443513	2	3.037684211	1.518842105	2	NA	NA	1	NA	NA	1	4	NA	1	1	6.38E-33	1	7.20E-17	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	80374886	G	A	-	-	-	-	-	-	47	0	0	43	6	14	32	3	9.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.673496181	2	2	1	0	1	0.326503819	NA	2	NA	1	NA	0.673496181	0.698882236	0.698882236	1	0.887870045	0.887870045	1	NA	NA	1	NA	NA	0	4	NA	1	1	8.13E-08	1	0.000556213	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	68586740	G	T	CPT1A	CCDS8185.1	r.?	-	-	intronic	18	0	0	40	5	12.5	26	3	11.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.624001996	0.624001996	1	1.12377193	1.12377193	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.00000178	1	0.000298167	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	80467709	A	G	-	-	-	-	-	-	48	0	0	48	6	12.5	35	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	0.668268596	0.668268596	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	0.00000016	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	80508621	C	T	-	-	-	-	-	-	45	0	0	30	4	13.3	31	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.663938124	0.663938124	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.0000154	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	80543539	C	G	-	-	-	-	-	-	66	0	0	51	5	9.8	22	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	0.52392258	0.52392258	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	0.00000606	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	17	80653364	C	A	RAB40B	CCDS11816.1	r.?	-	-	intronic	20	0	0	34	7	20.6	26	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	10	8.273015789	9	7	1	1	1	0.726984211	NA	7	NA	2	NA	0.273015789	2.470355289	0.823451763	3	0	NA	0	NA	NA	0	NA	NA	0	NA	NA	1	1	3.73E-10	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	80676731	G	C	-	-	-	-	-	-	49	0	0	40	6	15	32	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	0.748802395	0.748802395	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	5.18E-08	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	69570080	C	A	-	-	-	-	-	-	13	0	0	31	12	38.7	28	9	32.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.93191018	0.96595509	2	3.136789474	1.568394737	2	NA	NA	1	NA	NA	1	4	NA	1	1	3.16E-20	1	1.24E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	80799424	T	G	CDYL2	CCDS32493.1	r.?	-	-	intronic	50	0	0	48	8	16.7	40	3	7.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	5.626372055	3	3	3	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	1.334666667	1.334666667	1	0.929872641	0.929872641	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.23E-10	1	0.001075403	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	80801766	T	C	-	-	-	-	-	-	47	0	0	33	16	48.5	22	3	13.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1	1.304475247	1	1	0	0	1	0.695524753	NA	2	NA	0	NA	0.304475247	1.451127745	1.451127745	1	1.09839109	1.09839109	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.64E-28	1	0.000179267	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	155072277	G	C	-	-	-	-	-	-	22	0	0	32	17	53.1	14	6	42.9	2	0	0	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.119760479	1.05988024	2	3.763157895	1.881578947	2	NA	NA	1	NA	NA	1	4	NA	1	1	4.02E-31	1	4.53E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	80852491	G	A	ANTXR2	CCDS47085.1	r.?	-	-	intronic	61	0	0	44	10	22.7	43	6	14	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	1.133187625	1.133187625	1	1.271948055	1.271948055	1	NA	NA	1	NA	NA	0	4	NA	1	1	2.08E-14	1	8.13E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	80872548	C	T	BCKDHB	CCDS4994.1	r.?	-	-	intronic	33	0	0	32	11	34.4	20	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.373253493	1.373253493	1	0	0	1	NA	NA	1	NA	NA	1	4	NA	1	1	5.72E-18	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	80878525	G	A	AC010849.1	ENST00000504475	r.?	-	-	intronic	40	0	0	34	13	38.2	29	2	6.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	3	2	3	0	0	1	1	NA	NA	NA	NA	NA	NA	1.5249501	1.5249501	1	0.674263158	0.674263158	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.03E-21	1	0.009279585	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	80936726	G	C	-	-	-	-	-	-	40	0	0	36	7	19.4	34	3	8.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.673496181	2	2	1	0	1	0.326503819	NA	2	NA	1	NA	0.673496181	0.968451098	0.968451098	1	0.831197489	0.831197489	1	NA	NA	1	NA	NA	0	4	NA	1	1	5.74E-10	1	0.000666058	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	77245814	G	A	-	-	-	-	-	-	30	0	0	41	5	12.2	25	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	4	2.673496181	2	2	2	0	1	0.326503819	NA	2	NA	1	NA	0.673496181	0.731025948	0.731025948	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	0.00000202	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	81021671	C	G	-	-	-	-	-	-	59	0	0	42	7	16.7	37	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	0.892806845	0.892806845	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	1.81E-09	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	81102794	C	A	MYF6	CCDS9019.1	r.831c>a	c.?	p.?	3'UTR variant	34	0	0	36	7	19.4	20	1	5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.968451098	0.968451098	1	0.488596491	0.488596491	1	NA	NA	1	NA	NA	1	4	NA	1	1	5.74E-10	1	0.09538952	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	81121081	T	A	C14orf145	CCDS32130.1	r.?	-	-	intronic	52	0	0	42	21	50	38	10	26.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	3	2	3	0	0	1	1	NA	NA	NA	NA	NA	NA	1.996007984	0.998003992	2	2.570017544	0.856672515	3	NA	NA	0	NA	NA	1	4	NA	1	1	2.32E-37	1	4.06E-15	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	81121085	C	T	-	-	-	-	-	-	38	0	0	39	13	33.3	28	12	42.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.662341317	0.831170659	2	4.029563127	2.014781564	2	NA	NA	1	NA	NA	0	4	NA	1	1	8.79E-21	1	6.90E-21	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	81131886	G	A	-	-	-	-	-	-	45	0	0	41	10	24.4	24	0	0	144	0	0	240	32	13.3	268	23	8.6	9.78E-15	FALSE	TRUE	3	2.673496181	2	2	1	0	1	0.326503819	NA	2	NA	1	NA	0.673496181	1.218051896	1.218051896	1	0	NA	0	0.663938124	0.663938124	1	0.812306637	0.812306637	1	NA	3	1	1	9.51E-15	5.43E-35	1	3.79E-21	YES	1_1	0_1	somatic	custom.pulldown.HiSeq
PD9852b	11	81148756	A	G	-	-	-	-	-	-	48	0	0	48	5	10.4	31	3	9.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.673496181	2	2	1	0	1	0.326503819	NA	2	NA	1	NA	0.673496181	0.519169661	0.519169661	1	0.916206323	0.916206323	1	NA	NA	1	NA	NA	0	4	NA	1	1	0.00000447	1	0.000505952	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	81177416	G	A	PKD1L2	ENST00000299598	r.?	-	-	intronic	25	0	0	50	18	36	37	11	29.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	5.626372055	3	3	3	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	2.877125749	0.959041916	3	3.682295658	1.227431886	3	NA	NA	1	NA	NA	0	4	NA	1	1	5.92E-29	1	3.70E-17	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	81234798	G	T	LIN7A	CCDS9021.1	r.?	-	-	intronic	57	0	0	48	7	14.6	34	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.728834331	0.728834331	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	4.81E-09	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	81286976	C	T	-	-	-	-	-	-	41	0	0	46	5	10.9	49	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5	5	3	3	2	2	1	1	NA	NA	NA	NA	NA	NA	0.762129741	0.762129741	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.00000361	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	81315321	A	T	C14orf145	CCDS32130.1	r.?	-	-	intronic	32	0	0	24	11	45.8	28	11	39.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	3	2	3	0	0	1	1	NA	NA	NA	NA	NA	NA	1.828343313	0.914171657	2	3.840368421	1.280122807	3	NA	NA	0	NA	NA	1	4	NA	1	1	1.15E-19	1	9.70E-19	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	81325501	T	C	C4orf22	CCDS3587.1	r.?	-	-	intronic	52	0	0	42	7	16.7	26	3	11.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	0.833666667	0.833666667	1	1.044814474	1.044814474	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.81E-09	1	0.000298167	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	81327235	C	T	C4orf22	CCDS3587.1	r.?	-	-	intronic	39	0	0	35	8	22.9	29	3	10.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	1.143171657	1.143171657	1	0.935790355	0.935790355	1	NA	NA	1	NA	NA	0	4	NA	1	1	8.15E-12	1	0.000414371	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	48513315	T	C	KIAA0146	CCDS43737.1	r.?	-	-	intronic	46	0	0	37	19	51.4	19	1	5.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1	2.620991218	1	2	0	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.537896208	1.537896208	1	0.497824815	0.497824815	1	NA	NA	0	NA	NA	1	4	NA	1	1	3.09E-34	1	0.090843738	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	81348282	T	C	-	-	-	-	-	-	50	0	0	29	6	20.7	38	2	5.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.033347305	1.033347305	1	0.517912281	0.517912281	1	NA	NA	1	NA	NA	1	4	NA	1	1	6.72E-09	1	0.015598339	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	61296535	A	G	-	-	-	-	-	-	24	0	0	38	10	26.3	34	1	2.9	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.3129002	1.3129002	1	0.27239471	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	4.06E-15	1	0.156694864	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	81372840	A	T	GAN	CCDS10935.1	r.?	-	-	intronic	62	0	0	46	18	39.1	36	9	25	0	0	NA	0	0	NA	1	1	100	0.01	TRUE	FALSE	6	5.626372055	3	3	3	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	3.124878244	1.041626081	3	3.09957547	1.033191823	3	NA	NA	1	12.39830188	12.39830188	1	4	NA	1	1	9.41E-30	1	1.63E-13	0.005	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	81385812	T	A	C4orf22	CCDS3587.1	r.?	-	-	intronic	46	0	0	39	12	30.8	27	4	14.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	1.537540918	1.537540918	1	1.344630801	1.344630801	1	NA	NA	1	NA	NA	0	4	NA	1	1	8.43E-19	1	0.00001	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	81398770	C	T	-	-	-	-	-	-	35	0	0	39	7	17.9	23	4	17.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3.293619843	2	2	1	1	1	0.706380157	NA	3	NA	1	NA	0.293619843	0.893570858	0.893570858	1	1.751405642	1.751405642	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.04E-09	1	0.00000513	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	81453403	C	A	ATG10	CCDS4057.1	r.?	-	-	intronic	55	0	0	44	16	36.4	31	5	16.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.181093812	1.090546906	2	1.734280702	1.734280702	1	NA	NA	1	NA	NA	1	4	NA	1	1	5.57E-26	1	0.000000476	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	81502991	T	A	C4orf22	CCDS3587.1	r.?	-	-	intronic	34	0	0	35	7	20	24	4	16.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	0.998403194	0.998403194	1	1.517252323	1.517252323	1	NA	NA	1	NA	NA	0	4	NA	1	1	4.65E-10	1	0.00000613	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	84146692	C	A	DLG2	CCDS41696.1	r.?	-	-	intronic	52	0	0	41	18	43.9	27	6	22.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.673496181	2	2	1	0	1	0.326503819	NA	2	NA	1	NA	0.673496181	2.19149501	1.095747505	2	2.096884573	1.048442287	2	NA	NA	1	NA	NA	0	4	NA	1	1	6.91E-31	1	4.23E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	81528619	A	C	ATG10	CCDS4057.1	r.?	-	-	intronic	44	0	0	51	11	21.6	36	3	8.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.294275449	1.294275449	1	0.894070175	0.894070175	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.94E-15	1	0.000788827	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	81539881	C	A	-	-	-	-	-	-	46	0	0	37	7	18.9	39	3	7.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	0.754491018	0.754491018	1	0.829438596	0.829438596	1	NA	NA	0	NA	NA	1	4	NA	1	1	7.05E-10	1	0.000998458	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	81544774	G	C	C4orf22	CCDS3587.1	r.?	-	-	intronic	35	0	0	39	8	20.5	21	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	1.023363273	1.023363273	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	2.09E-11	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	81546490	C	T	-	-	-	-	-	-	26	0	0	35	13	37.1	30	8	26.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	5.626372055	3	3	3	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	2.965037924	0.988345975	3	3.310346602	1.103448867	3	NA	NA	1	NA	NA	0	4	NA	1	1	1.63E-21	1	2.07E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	81587851	A	G	CACNA2D1	CCDS5598.1	r.?	-	-	intronic	67	0	0	76	21	27.6	53	9	17	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	2.205796407	1.102898204	2	2.17122807	1.085614035	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.07E-30	1	7.10E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	81610166	G	A	-	-	-	-	-	-	50	0	0	44	10	22.7	33	5	15.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.133187625	1.133187625	1	1.789333333	1.789333333	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.08E-14	1	0.00000066	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	81612760	C	G	AP002802.1	ENST00000500502	r.?	-	-	intronic	48	0	0	28	9	32.1	33	8	24.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.673496181	2	2	1	0	1	0.326503819	NA	2	NA	1	NA	0.673496181	1.602437126	1.602437126	1	2.285793093	1.142896547	2	NA	NA	1	NA	NA	0	4	NA	1	1	1.24E-14	1	4.85E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	81621633	C	T	-	-	-	-	-	-	49	0	0	41	9	22	30	5	16.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.098243513	1.098243513	1	1.965912281	1.965912281	1	NA	NA	0	NA	NA	1	4	NA	1	1	5.92E-13	1	0.000000401	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	81627440	T	C	-	-	-	-	-	-	67	0	0	55	14	25.5	29	4	13.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.527964072	1.527964072	1	1.486526316	1.486526316	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.19E-20	1	0.0000134	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	81681333	A	C	-	-	-	-	-	-	59	0	0	52	6	11.5	27	4	14.8	0	0	NA	2	0	0	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.689081836	0.689081836	1	1.594245614	1.594245614	1	0	0	1	NA	NA	1	4	NA	1	1	0.000000261	1	0.00001	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	88309514	T	C	GRM5	CCDS44694.1	r.?	-	-	intronic	55	0	0	45	7	15.6	31	4	12.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.673496181	2	2	1	0	1	0.326503819	NA	2	NA	1	NA	0.673496181	0.778754491	0.778754491	1	1.218459955	1.218459955	1	NA	NA	1	NA	NA	0	4	NA	1	1	0.000000003	1	0.0000177	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	81729144	C	T	-	-	-	-	-	-	40	0	0	43	12	27.9	38	6	15.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.392772455	1.392772455	1	1.859964912	1.859964912	1	NA	NA	0	NA	NA	1	4	NA	1	1	3.24E-18	1	3.76E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	81840432	A	G	-	-	-	-	-	-	56	0	0	51	10	19.6	47	2	4.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.17443513	1.17443513	1	0.463192982	0.463192982	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.04E-13	1	0.02328732	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	81846292	C	A	-	-	-	-	-	-	35	0	0	38	14	36.8	27	4	14.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	1.967382748	0.983691374	2	1.742245614	1.742245614	1	NA	NA	0	NA	NA	1	4	NA	1	1	5.28E-23	1	0.00001	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	88801591	G	T	GRM5	CCDS44694.1	r.?	-	-	upstream	49	0	0	40	5	12.5	23	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.673496181	2	2	1	0	1	0.326503819	NA	2	NA	1	NA	0.673496181	0.624001996	0.624001996	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	0.00000178	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	81866171	C	T	-	-	-	-	-	-	49	0	0	39	14	35.9	38	5	13.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.151133733	1.075566866	2	1.421894737	1.421894737	1	NA	NA	1	NA	NA	1	4	NA	1	1	8.19E-23	1	0.00000137	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	81912169	A	T	-	-	-	-	-	-	59	0	0	44	18	40.9	35	6	17.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.450734531	1.225367265	2	1.842	1.842	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.47E-30	1	2.24E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	81912487	A	G	-	-	-	-	-	-	46	0	0	27	14	51.9	27	2	7.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.071856287	1.035928144	2	0.649122807	0.649122807	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.15E-25	1	0.00807567	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	81950820	C	T	-	-	-	-	-	-	47	0	0	54	11	20.4	34	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5	5	3	3	2	2	1	1	NA	NA	NA	NA	NA	NA	1.426371257	1.426371257	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	3.84E-15	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	81972797	A	T	-	-	-	-	-	-	62	0	0	52	4	7.7	34	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.46138523	0.46138523	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.000139698	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	81980518	C	T	-	-	-	-	-	-	55	0	0	42	11	26.2	25	4	16	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	1.400690978	1.400690978	1	1.883508772	1.883508772	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.81E-16	1	0.00000727	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	93493635	C	A	C11orf54	CCDS8294.1	r.?	-	-	intronic	30	0	0	42	9	21.4	22	0	0	1	0	0	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.673496181	2	2	1	0	1	0.326503819	NA	2	NA	1	NA	0.673496181	1.068291417	1.068291417	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	7.51E-13	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	82043805	C	T	-	-	-	-	-	-	44	0	0	42	18	42.9	35	7	20	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	2.14157485	1.070787425	2	1.954385965	1.954385965	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.20E-30	1	4.65E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	82058989	T	A	-	-	-	-	-	-	52	0	0	33	7	21.2	35	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	3	2	3	0	0	1	1	NA	NA	NA	NA	NA	NA	0.846307385	0.846307385	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	2.98E-10	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	82062128	T	C	-	-	-	-	-	-	50	0	0	47	19	40.4	41	7	17.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	2.159844104	1.079922052	2	2.013	1.0065	2	NA	NA	0	NA	NA	1	4	NA	1	1	1.16E-31	1	1.51E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	82101141	G	T	-	-	-	-	-	-	64	0	0	49	5	10.2	37	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	0.545307175	0.545307175	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	0.00000496	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	82162846	G	T	-	-	-	-	-	-	49	0	0	48	10	20.8	32	2	6.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	1.111998944	1.111998944	1	0.729859649	0.729859649	1	NA	NA	0	NA	NA	1	4	NA	1	1	5.37E-14	1	0.011224977	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	82168051	G	A	LPHN2	CCDS689.1	r.?	-	-	intronic	45	0	0	38	11	28.9	26	1	3.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.442692615	1.442692615	1	0.447333333	0.447333333	1	NA	NA	0	NA	NA	1	4	NA	1	1	5.19E-17	1	0.122190858	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	82187745	C	G	-	-	-	-	-	-	46	0	0	56	13	23.2	42	9	21.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.390147705	1.390147705	1	2.305192982	1.152596491	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.89E-18	1	7.51E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	82189333	T	G	-	-	-	-	-	-	40	0	0	53	6	11.3	33	4	12.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.677097804	0.677097804	1	1.303403509	1.303403509	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.000000293	1	0.0000228	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	82190963	T	C	FABP5	CCDS6228.1	r.?	-	-	upstream	43	0	0	46	23	50	43	11	25.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	2.496007984	1.248003992	2	2.404587787	1.202293893	2	NA	NA	1	NA	NA	0	4	NA	1	1	8.79E-41	1	2.42E-16	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	82246125	G	A	-	-	-	-	-	-	42	0	0	44	16	36.4	43	7	16.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	5.626372055	3	3	3	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	2.909093812	0.969697937	3	2.020923206	1.010461603	2	NA	NA	1	NA	NA	0	4	NA	1	1	5.57E-26	1	2.15E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	82262246	C	A	-	-	-	-	-	-	55	0	0	50	4	8	48	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.479361277	0.479361277	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.000119787	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	93865345	G	A	PANX1	CCDS8296.1	r.?	-	-	intronic	51	0	0	46	14	30.4	33	2	6.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.673496181	2	2	1	0	1	0.326503819	NA	2	NA	1	NA	0.673496181	1.517572854	1.517572854	1	0.576170986	0.576170986	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.26E-21	1	0.011909843	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	82308916	T	C	-	-	-	-	-	-	50	0	0	43	11	25.6	27	1	3.7	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.673496181	2	2	1	0	1	0.326503819	NA	2	NA	1	NA	0.673496181	1.277956088	1.277956088	1	0.349480762	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	2.42E-16	1	0.126579904	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	82310045	G	A	-	-	-	-	-	-	41	0	0	43	14	32.6	27	2	7.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	1.627397206	0.813698603	2	0.672315401	0.672315401	1	NA	NA	1	NA	NA	0	4	NA	1	1	4.18E-22	1	0.00807567	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	82316275	A	C	-	-	-	-	-	-	57	0	0	60	12	20	39	8	20.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.198403194	1.198403194	1	2.208245614	1.104122807	2	NA	NA	1	NA	NA	1	4	NA	1	1	2.74E-16	1	2.09E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	62852030	G	A	-	-	-	-	-	-	43	0	0	36	17	47.2	32	3	9.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	2.356231537	1.178115768	2	0.882934578	0.882934578	1	NA	NA	1	NA	NA	0	4	NA	1	1	6.00E-30	1	0.000556213	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	82413762	C	T	-	-	-	-	-	-	52	0	0	35	13	37.1	27	3	11.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	1.983421194	0.991710597	2	1.306684211	1.306684211	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.63E-21	1	0.000334187	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	82490353	G	T	-	-	-	-	-	-	26	0	0	33	15	45.5	33	8	24.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	2.271367265	1.135683633	2	2.273086892	1.136543446	2	NA	NA	1	NA	NA	0	4	NA	1	1	2.91E-26	1	4.85E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	82493900	G	T	PCLO	CCDS47630.1	r.?	-	-	intronic	75	0	0	59	17	28.8	37	3	8.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.725700599	0.862850299	2	0.872526316	0.872526316	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.74E-25	1	0.000855237	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	82508678	C	T	PCLO	CCDS47630.1	r.13918g>a	c.13629G>A	p.A4543A	silent	44	0	0	43	10	23.3	23	2	8.7	175	0	0	366	55	15	320	44	13.8	1.90E-35	TRUE	TRUE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.396139721	1.396139721	1	0.937157895	0.937157895	1	0.898802395	0.898802395	1	1.486526316	0.743263158	2	4	3	1	1	1.61E-14	6.45E-62	0.00589844	4.20E-48	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	8	75640809	G	A	-	-	-	-	-	-	44	0	0	42	12	28.6	33	7	21.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.427716567	1.427716567	1	1.991299261	0.99564963	2	NA	NA	1	NA	NA	0	4	NA	1	1	2.35E-18	1	2.98E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	82564196	C	T	-	-	-	-	-	-	49	0	0	41	5	12.2	30	5	16.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	0.609025948	0.609025948	1	1.517252323	1.517252323	1	NA	NA	1	NA	NA	0	4	NA	1	1	0.00000202	1	0.000000401	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	82593596	C	G	-	-	-	-	-	-	45	0	0	38	11	28.9	23	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	1.442692615	1.442692615	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	5.19E-17	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	82612473	A	C	-	-	-	-	-	-	50	0	0	41	12	29.3	44	2	4.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	1.462660679	1.462660679	1	0.408840446	0.408840446	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.69E-18	1	0.020580492	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	82651460	C	T	-	-	-	-	-	-	52	0	0	28	13	46.4	19	2	10.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.852295409	0.926147705	2	0.921052632	0.921052632	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.26E-23	1	0.004039874	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	82668290	T	C	-	-	-	-	-	-	46	0	0	35	12	34.3	29	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	1.369261477	1.369261477	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	1.83E-19	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	82684326	G	A	-	-	-	-	-	-	50	0	0	42	12	28.6	29	5	17.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	1.528998549	1.528998549	1	2.02477193	2.02477193	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.35E-18	1	0.000000336	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	82695101	G	A	-	-	-	-	-	-	51	0	0	58	7	12.1	31	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	0.604033932	0.604033932	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	1.88E-08	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	82710292	T	A	-	-	-	-	-	-	50	0	0	49	4	8.2	37	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.491345309	0.491345309	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.000110643	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	82746128	A	T	-	-	-	-	-	-	51	0	0	34	15	44.1	33	5	15.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	2.357651608	1.178825804	2	1.789333333	1.789333333	1	NA	NA	0	NA	NA	1	4	NA	1	1	5.18E-26	1	0.00000066	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	82756830	G	T	C12orf26	CCDS9024.1	r.?	-	-	intronic	28	0	0	47	23	48.9	34	8	23.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	2.441095808	1.220547904	2	2.296403509	1.148201754	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.71E-40	1	6.32E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	82766781	T	C	-	-	-	-	-	-	58	0	0	57	23	40.4	30	3	10	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	2.159844104	1.079922052	2	1.177192982	1.177192982	1	NA	NA	0	NA	NA	1	4	NA	1	1	5.38E-38	1	0.000458697	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	82782195	G	A	VCAN	CCDS4060.1	r.?	-	-	intronic	55	0	0	46	7	15.2	29	4	13.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.910786427	0.910786427	1	1.486526316	1.486526316	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.53E-09	1	0.0000134	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	82784610	G	T	-	-	-	-	-	-	48	0	0	50	6	12	41	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.719041916	0.719041916	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.000000206	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	82823217	G	T	-	-	-	-	-	-	49	0	0	50	6	12	35	3	8.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	5.626372055	3	3	3	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	0.959041916	0.959041916	1	1.066253962	1.066253962	1	NA	NA	1	NA	NA	0	4	NA	1	1	0.000000206	1	0.000725791	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	96026563	G	T	MAML2	CCDS44714.1	r.?	-	-	intronic	63	0	0	46	8	17.4	24	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.673496181	2	2	1	0	1	0.326503819	NA	2	NA	1	NA	0.673496181	0.868610778	0.868610778	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	8.61E-11	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	82872051	C	G	PCF11	CCDS44689.1	r.?	-	-	intronic	51	0	0	41	18	43.9	25	7	28	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.673496181	2	2	1	0	1	0.326503819	NA	2	NA	1	NA	0.673496181	2.19149501	1.095747505	2	2.644719282	1.322359641	2	NA	NA	1	NA	NA	0	4	NA	1	1	6.91E-31	1	3.47E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	97058464	C	A	-	-	-	-	-	-	57	0	0	36	10	27.8	33	5	15.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.673496181	2	2	1	0	1	0.326503819	NA	2	NA	1	NA	0.673496181	1.387780439	1.387780439	1	1.435704753	1.435704753	1	NA	NA	1	NA	NA	0	4	NA	1	1	2.21E-15	1	0.00000066	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	82894183	C	T	-	-	-	-	-	-	57	0	0	46	9	19.6	39	4	10.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	0.97843513	0.97843513	1	1.212508772	1.212508772	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.82E-12	1	0.0000447	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	82919965	C	T	-	-	-	-	-	-	50	0	0	37	9	24.3	27	4	14.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	1.299114151	1.299114151	1	1.742245614	1.742245614	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.14E-13	1	0.00001	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	99293337	C	T	-	-	-	-	-	-	38	0	0	31	14	45.2	23	4	17.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.673496181	2	2	1	0	1	0.326503819	NA	2	NA	1	NA	0.673496181	2.256391218	1.128195609	2	1.643504125	1.643504125	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.49E-24	1	0.00000513	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	82923690	C	G	-	-	-	-	-	-	64	0	0	56	5	8.9	25	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.533289421	0.533289421	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.00000965	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	111400969	A	G	C11orf88	CCDS41712.1	r.?	-	-	intronic	51	0	0	59	5	8.5	38	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5	5.491323809	4	4	1	1	1	0.508676191	NA	5	NA	1	NA	0.491323809	0.594321357	0.594321357	1	0	0	1	NA	NA	1	NA	NA	0	3	NA	1	1	0.0000125	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	112818966	C	A	-	-	-	-	-	-	38	0	0	64	8	12.5	32	2	6.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5	5.491323809	4	4	1	1	1	0.508676191	NA	5	NA	1	NA	0.491323809	0.874001996	0.874001996	1	0.760321725	0.760321725	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.35E-09	1	0.011224977	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	83061275	G	A	-	-	-	-	-	-	42	0	0	35	7	20	29	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.673496181	2	2	1	0	1	0.326503819	NA	2	NA	1	NA	0.673496181	0.998403194	0.998403194	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	4.65E-10	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	83072730	G	A	-	-	-	-	-	-	50	0	0	50	14	28	32	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.397764471	1.397764471	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	4.84E-21	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	116211974	C	A	-	-	-	-	-	-	43	0	0	73	13	17.8	25	2	8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5	5.491323809	4	4	1	1	1	0.508676191	NA	5	NA	1	NA	0.491323809	1.244578842	1.244578842	1	0.981060291	0.981060291	1	NA	NA	1	NA	NA	1	4	NA	1	1	7.97E-17	1	0.006948068	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	83091768	C	T	-	-	-	-	-	-	43	0	0	26	12	46.2	15	4	26.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	2.306311377	1.153155689	2	2.425786648	2.425786648	1	NA	NA	1	NA	NA	0	4	NA	1	1	2.21E-21	1	0.000000816	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	117635282	G	A	DSCAML1	CCDS8384.1	r.?	-	-	intronic	32	0	0	57	12	21.1	25	1	4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5	5.491323809	4	4	1	1	1	0.508676191	NA	5	NA	1	NA	0.491323809	1.475315369	1.475315369	1	0.490530145	0.490530145	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.40E-16	1	0.117779757	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	83237978	G	A	-	-	-	-	-	-	59	0	0	57	16	28.1	25	9	36	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.683756487	0.841878244	2	3.877894737	1.938947368	2	NA	NA	1	NA	NA	1	4	NA	1	1	7.28E-24	1	3.71E-15	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	83282115	T	C	-	-	-	-	-	-	66	0	0	37	18	48.6	39	8	20.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	2.598228303	1.299114151	2	2.413245614	0.804415205	3	NA	NA	0	NA	NA	1	4	NA	1	1	6.16E-32	1	2.09E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	83303873	G	A	-	-	-	-	-	-	49	0	0	42	6	14.3	38	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	0.570858283	0.570858283	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	7.02E-08	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	83310871	C	T	-	-	-	-	-	-	56	0	0	38	9	23.7	32	4	12.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.183107784	1.183107784	1	1.471491228	1.471491228	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.79E-13	1	0.0000201	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	83311488	T	C	-	-	-	-	-	-	49	0	0	50	13	26	39	11	28.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.557924152	1.557924152	1	3.037684211	1.518842105	2	NA	NA	1	NA	NA	1	4	NA	1	1	3.65E-19	1	7.20E-17	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	83370566	C	A	-	-	-	-	-	-	51	0	0	33	7	21.2	40	3	7.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	0.846307385	0.846307385	1	0.807894737	0.807894737	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.98E-10	1	0.001075403	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	83380863	G	A	-	-	-	-	-	-	46	0	0	31	10	32.3	24	2	8.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	3	2	3	0	0	1	1	NA	NA	NA	NA	NA	NA	1.289421158	1.289421158	1	0.811070175	0.811070175	1	NA	NA	0	NA	NA	1	4	NA	1	1	3.94E-16	1	0.006413403	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	83383841	C	T	-	-	-	-	-	-	48	0	0	39	27	69.2	25	7	28	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.76247505	1.381237525	2	2.456140351	1.228070175	2	NA	NA	1	NA	NA	1	4	NA	1	1	2.75E-53	1	3.47E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	83432591	G	A	-	-	-	-	-	-	60	0	0	61	24	39.3	39	8	20.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.961862275	0.980931138	2	2.413245614	0.804415205	3	NA	NA	0	NA	NA	1	4	NA	1	1	2.97E-39	1	2.09E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	83455958	G	T	TMTC2	CCDS9025.1	r.?	-	-	intronic	61	0	0	36	8	22.2	33	1	3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.108227545	1.108227545	1	0.293157895	0.293157895	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.04E-11	1	0.15245715	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	83463655	C	T	-	-	-	-	-	-	48	0	0	48	9	18.8	31	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.126499002	1.126499002	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	2.75E-12	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	83479966	A	C	-	-	-	-	-	-	53	0	0	48	9	18.8	37	2	5.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0.938499002	0.938499002	1	0.507217736	0.507217736	1	NA	NA	1	NA	NA	0	4	NA	1	1	2.75E-12	1	0.014826063	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	83490722	A	G	TMTC2	CCDS9025.1	r.?	-	-	intronic	51	0	0	51	21	41.2	34	4	11.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	2.056710579	1.028355289	2	1.153087719	1.153087719	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.73E-35	1	0.0000257	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	83499435	T	C	DLG2	CCDS41696.1	r.?	-	-	intronic	48	0	0	44	8	18.2	30	1	3.3	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.673496181	2	2	1	0	1	0.326503819	NA	2	NA	1	NA	0.673496181	0.908546906	0.908546906	1	0.311699058	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	5.90E-11	1	0.139615808	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	83527579	T	A	-	-	-	-	-	-	51	0	0	41	6	14.6	33	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0.728834331	0.728834331	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	6.05E-08	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	83534604	T	A	-	-	-	-	-	-	61	1	1.6	35	8	22.9	34	1	2.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.914171657	0.914171657	1	0.254385965	0.254385965	1	NA	NA	1	NA	NA	1	4	NA	0.263440347	1	8.15E-12	1	0.156694864	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	83537520	A	T	-	-	-	-	-	-	67	0	0	48	5	10.4	34	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0.519169661	0.519169661	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	0.00000447	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	83559435	C	T	-	-	-	-	-	-	60	0	0	52	15	28.8	31	7	22.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	1.539690846	0.935489114	1.645867197	2.66045614	0.886818713	3	NA	NA	0	NA	NA	1	4	NA	1	1	1.15E-22	1	1.85E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	83580444	A	G	-	-	-	-	-	-	47	0	0	31	17	54.8	22	8	36.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5	5	3	3	2	2	1	1	NA	NA	NA	NA	NA	NA	3.83162475	1.27720825	3	4.284982456	1.428327485	3	NA	NA	1	NA	NA	1	4	NA	1	1	1.89E-31	1	1.17E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	83581841	C	T	SCD5	CCDS3595.1	r.1194g>a	c.?	p.?	3'UTR variant	52	0	0	42	15	35.7	19	2	10.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	1.782149701	0.89107485	2	0.953961042	0.953961042	1	NA	NA	1	NA	NA	0	4	NA	1	1	2.65E-24	1	0.004039874	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	83584836	C	T	SEMA3A	CCDS5599.1	r.?	-	-	downstream	64	0	0	50	18	36	41	13	31.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.157125749	1.078562874	2	3.414701754	1.707350877	2	NA	NA	1	NA	NA	1	4	NA	1	1	5.92E-29	1	1.89E-20	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	119091043	G	T	CBL	CCDS8418.1	r.?	-	-	intronic	30	0	0	75	20	26.7	39	4	10.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	4	4	0	0	1	1	NA	NA	NA	NA	NA	NA	1.599868263	0.799934132	2	1.109508772	1.109508772	1	NA	NA	1	NA	NA	1	4	NA	1	1	5.89E-29	1	0.0000447	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	83657862	C	T	CDH13	ENST00000268613	r.?	-	-	intronic	43	0	0	39	15	38.5	28	3	10.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	5.626372055	3	3	3	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	3.076926148	1.025642049	3	1.326618301	1.326618301	1	NA	NA	1	NA	NA	0	4	NA	1	1	6.85E-25	1	0.000372895	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	83658975	A	C	HDX	CCDS35342.1	r.?	-	-	intronic	46	0	0	21	3	14.3	18	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1	1.304475247	1	1	0	0	1	0.695524753	NA	2	NA	0	NA	0.304475247	0.427858283	0.427858283	1	0	0	1	NA	NA	0	NA	NA	0	3	NA	1	1	0.000155401	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	83687936	G	A	CDH13	ENST00000268613	r.?	-	-	intronic	54	0	0	42	11	26.2	40	4	10	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	5.626372055	3	3	3	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	2.093908184	1.046954092	2	1.239830188	1.239830188	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.81E-16	1	0.0000495	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	83733250	G	T	-	-	-	-	-	-	33	0	0	32	6	18.8	24	4	16.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	0.938499002	0.938499002	1	1.517252323	1.517252323	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.27E-08	1	0.00000613	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	83734023	G	A	HDX	CCDS35342.1	r.?	-	-	intronic	41	0	0	33	11	33.3	32	4	12.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1	1.304475247	1	1	0	0	1	0.695524753	NA	2	NA	0	NA	0.304475247	0.996341317	0.996341317	1	1.009550634	1.009550634	1	NA	NA	0	NA	NA	1	4	NA	1	1	8.54E-18	1	0.0000201	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	83749261	A	G	SEMA3A	CCDS5599.1	r.?	-	-	intronic	55	0	0	37	6	16.2	39	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.970706587	0.970706587	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	3.18E-08	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	83762495	C	T	-	-	-	-	-	-	61	0	0	33	7	21.2	34	3	8.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.058307385	1.058307385	1	0.826577052	0.826577052	1	NA	NA	1	NA	NA	0	4	NA	1	1	2.98E-10	1	0.000666058	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	83766298	G	A	DLG2	CCDS41696.1	r.?	-	-	intronic	47	0	0	29	7	24.1	18	2	11.1	0	0	NA	2	0	0	0	0	NA	1	TRUE	FALSE	3	2.673496181	2	2	1	0	1	0.326503819	NA	2	NA	1	NA	0.673496181	1.203075848	1.203075848	1	1.048442287	1.048442287	1	0	0	1	NA	NA	0	4	NA	1	1	1.11E-10	1	0.003626632	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	83783067	A	C	NRG3	CCDS31233.1	r.?	-	-	intronic	50	0	0	37	18	48.6	26	9	34.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.94011976	0.97005988	2	3.035087719	1.51754386	2	NA	NA	1	NA	NA	1	4	NA	1	1	6.16E-32	1	5.65E-15	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	83793755	C	A	-	-	-	-	-	-	53	0	0	73	11	15.1	31	1	3.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5	5	3	3	2	2	1	1	NA	NA	NA	NA	NA	NA	1.055794411	1.055794411	1	0.376701754	0.376701754	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.31E-13	1	0.143917729	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	83798373	T	A	-	-	-	-	-	-	37	0	0	40	11	27.5	33	2	6.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.647804391	1.647804391	1	0.657087719	0.657087719	1	NA	NA	1	NA	NA	1	4	NA	1	1	9.88E-17	1	0.011909843	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	83835630	A	C	-	-	-	-	-	-	45	0	0	43	7	16.3	35	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	3	2	3	0	0	1	1	NA	NA	NA	NA	NA	NA	0.650698603	0.650698603	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	2.15E-09	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	83864223	T	C	-	-	-	-	-	-	43	0	0	14	4	28.6	27	3	11.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1	1.304475247	1	1	0	0	1	0.695524753	NA	2	NA	0	NA	0.304475247	0.855716567	0.855716567	1	0.896480963	0.896480963	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.000000601	1	0.000334187	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	128161277	C	T	-	-	-	-	-	-	47	0	0	52	36	69.2	36	15	41.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	4	4	0	0	1	1	NA	NA	NA	NA	NA	NA	4.14647505	1.036618762	4	4.491894737	1.122973684	4	NA	NA	1	NA	NA	1	4	NA	1	1	1.39E-70	1	1.54E-25	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	83876982	G	T	-	-	-	-	-	-	46	0	0	40	4	10	26	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.599201597	0.599201597	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.0000495	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	83883606	A	T	ENSG00000229561	ENST00000412414	r.?	-	-	intronic	36	0	0	31	13	41.9	33	12	36.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	5.626372055	3	3	3	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	3.348654691	1.11621823	3	4.512981884	1.504327295	3	NA	NA	1	NA	NA	0	4	NA	1	1	2.32E-22	1	7.86E-20	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	130409297	G	T	-	-	-	-	-	-	52	0	0	46	13	28.3	51	4	7.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	4	4	0	0	1	1	NA	NA	NA	NA	NA	NA	1.695740519	0.847870259	2	0.840210526	0.840210526	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.07E-19	1	0.000129466	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	83934579	T	C	-	-	-	-	-	-	50	0	0	64	10	15.6	54	3	5.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5	5	3	3	2	2	1	1	NA	NA	NA	NA	NA	NA	1.090754491	1.090754491	1	0.65922807	0.65922807	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.16E-12	1	0.00256299	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	83936999	T	A	LIN54	ENST00000505397	r.?	-	-	upstream	12	0	0	37	20	54.1	25	4	16	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	2.700680639	1.350340319	2	1.45365492	1.45365492	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.40E-36	1	0.00000727	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	83953785	G	T	COPS4	CCDS3600.1	r.?	-	-	upstream	22	0	0	35	12	34.3	27	3	11.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	1.712261477	0.856130739	2	1.008473101	1.008473101	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.83E-19	1	0.000334187	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	83954095	G	T	BNC1	CCDS10324.1	r.?	-	-	upstream	16	0	0	31	5	16.1	21	1	4.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3.293619843	2	2	1	1	1	0.706380157	NA	3	NA	1	NA	0.293619843	0.803714571	0.803714571	1	0.483146384	0.483146384	1	NA	NA	0	NA	NA	0	4	NA	1	1	0.000000476	1	0.099912572	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	83974493	T	A	-	-	-	-	-	-	37	0	0	53	5	9.4	43	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5	5	3	3	2	2	1	1	NA	NA	NA	NA	NA	NA	0.657249501	0.657249501	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.00000734	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	83987370	G	A	OSGIN1	CCDS10938.1	r.?	-	-	intronic	15	0	0	54	11	20.4	5	0	0	129	0	0	2	0	0	4	0	0	1	FALSE	FALSE	6	5.626372055	3	3	3	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	1.630371257	1.630371257	1	0	NA	0	0	0	1	0	NA	0	NA	NA	1	1	3.84E-15	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	84051162	G	T	-	-	-	-	-	-	49	0	0	49	23	46.9	32	5	15.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	2.507343774	1.253671887	2	1.836421053	1.836421053	1	NA	NA	0	NA	NA	1	4	NA	1	1	6.14E-40	1	0.000000562	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	84070627	G	A	-	-	-	-	-	-	51	0	0	26	7	26.9	29	1	3.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	3	2	3	0	0	1	1	NA	NA	NA	NA	NA	NA	1.073852295	1.073852295	1	0.332245614	0.332245614	1	NA	NA	0	NA	NA	1	4	NA	1	1	4.73E-11	1	0.135292269	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	84132639	C	A	-	-	-	-	-	-	59	0	0	46	22	47.8	37	7	18.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	2.555459113	1.277729556	2	2.224894737	1.112447368	2	NA	NA	0	NA	NA	1	4	NA	1	1	1.68E-38	1	7.05E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	84137872	A	T	-	-	-	-	-	-	33	0	0	40	10	25	37	3	8.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.248003992	1.248003992	1	0.760826604	0.760826604	1	NA	NA	1	NA	NA	0	4	NA	1	1	7.22E-15	1	0.000855237	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	130416109	C	T	-	-	-	-	-	-	17	0	0	31	17	54.8	14	5	35.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	4	4	0	0	1	1	NA	NA	NA	NA	NA	NA	3.28362475	1.094541583	3	3.845578947	0.961394737	4	NA	NA	1	NA	NA	1	4	NA	1	1	1.89E-31	1	6.03E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	80339183	C	A	-	-	-	-	-	-	60	0	0	48	11	22.9	29	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.143171657	1.143171657	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	9.31E-16	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	84234455	C	T	-	-	-	-	-	-	40	0	0	19	9	47.4	14	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	3	2	3	0	0	1	1	NA	NA	NA	NA	NA	NA	1.892215569	0.946107784	2	0	0	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.72E-16	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	84242727	C	A	-	-	-	-	-	-	51	0	0	53	9	17	35	3	8.6	0	0	NA	2	2	100	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	0.908845291	0.908845291	1	1.012385965	1.012385965	1	5.346148771	2.673074386	2	NA	NA	1	4	NA	1	1	7.10E-12	0.000025	0.000725791	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	84318504	C	T	-	-	-	-	-	-	45	0	0	57	14	24.6	39	8	20.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.474035928	1.474035928	1	2.208245614	1.104122807	2	NA	NA	1	NA	NA	1	4	NA	1	1	3.84E-20	1	2.09E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	134314689	A	G	-	-	-	-	-	-	46	0	0	49	16	32.7	38	4	10.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	4	4	0	0	1	1	NA	NA	NA	NA	NA	NA	1.959389222	0.979694611	2	1.131052632	1.131052632	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.37E-25	1	0.0000403	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	84342016	C	A	-	-	-	-	-	-	56	0	0	46	20	43.5	31	7	22.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	2.171526946	1.085763473	2	2.122800156	1.061400078	2	NA	NA	1	NA	NA	0	4	NA	1	1	4.72E-34	1	1.85E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	84353728	C	A	-	-	-	-	-	-	58	0	0	54	6	11.1	40	0	0	57	0	0	393	24	6.1	323	1	0.3	0.961080446	FALSE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0.554113772	0.554113772	1	0	NA	0	0.304512974	0.304512974	1	0.028178763	NA	0	NA	NA	1	1	0.000000329	1.47E-18	1	0.801913408	YES	1_1	0_0	somatic	custom.pulldown.HiSeq
PD9852b	10	84458844	C	T	NRG3	CCDS31233.1	r.?	-	-	intronic	45	0	0	29	15	51.7	33	5	15.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.063872255	1.031936128	2	1.333333333	1.333333333	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.22E-27	1	0.00000066	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	84482567	C	T	NRG3	CCDS31233.1	r.?	-	-	intronic	41	0	0	29	16	55.2	20	6	30	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.203592814	1.101796407	2	2.631578947	1.315789474	2	NA	NA	1	NA	NA	1	4	NA	1	1	9.74E-30	1	5.70E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	84496865	T	C	ZNF711	CCDS35344.1	r.?	-	-	upstream	56	0	0	34	12	35.3	35	7	20	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1	1.304475247	1	1	0	0	1	0.695524753	NA	2	NA	0	NA	0.304475247	1.056181637	1.056181637	1	1.615281014	1.615281014	1	NA	NA	0	NA	NA	0	4	NA	1	1	1.21E-19	1	4.65E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	84544904	A	T	-	-	-	-	-	-	52	0	0	32	10	31.2	25	2	8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	1.667998417	1.667998417	1	0.941754386	0.941754386	1	NA	NA	0	NA	NA	1	4	NA	1	1	5.70E-16	1	0.006948068	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	84555470	C	G	PRKACB	CCDS691.1	r.?	-	-	intronic	54	0	0	35	4	11.4	32	4	12.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	0.56908982	0.56908982	1	1.471491228	1.471491228	1	NA	NA	0	NA	NA	1	4	NA	1	1	0.0000289	1	0.0000201	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	84556369	G	A	-	-	-	-	-	-	18	0	0	40	15	37.5	22	5	22.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	5.626372055	3	3	3	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	2.997005988	0.999001996	3	2.814414527	0.938138176	3	NA	NA	1	NA	NA	0	4	NA	1	1	1.09E-24	1	7.67E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	3212411	A	G	TSPAN9	CCDS8520.1	r.?	-	-	intronic	41	0	0	75	23	30.7	40	9	22.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.532548902	0.766274451	2	2.198684211	1.099342105	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.10E-34	1	4.64E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	84593482	A	T	-	-	-	-	-	-	66	0	0	60	10	16.7	39	2	5.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.000666667	1.000666667	1	0.549368421	0.549368421	1	NA	NA	1	NA	NA	1	4	NA	1	1	5.86E-13	1	0.016387522	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	84648064	C	A	-	-	-	-	-	-	57	0	0	41	8	19.5	41	3	7.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0.973443114	0.973443114	1	0.685683236	0.685683236	1	NA	NA	1	NA	NA	0	4	NA	1	1	3.22E-11	1	0.001155993	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	84673273	C	T	-	-	-	-	-	-	52	0	0	45	10	22.2	35	5	14.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	1.186845027	1.186845027	1	1.683385965	1.683385965	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.66E-14	1	0.000000895	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	84694541	C	G	-	-	-	-	-	-	69	0	0	39	17	43.6	37	6	16.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	2.330920864	1.165460432	2	1.907052632	1.907052632	1	NA	NA	0	NA	NA	1	4	NA	1	1	3.51E-29	1	3.18E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	84706941	G	A	-	-	-	-	-	-	44	0	0	27	19	70.4	32	10	31.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.810379242	1.405189621	2	2.736842105	1.368421053	2	NA	NA	1	NA	NA	1	4	NA	1	1	4.08E-38	1	5.70E-16	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	84723007	C	G	-	-	-	-	-	-	46	0	0	44	15	34.1	33	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.702277445	0.851138723	2	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	6.12E-24	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	84824138	G	C	-	-	-	-	-	-	39	0	0	31	8	25.8	38	2	5.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.28794012	1.28794012	1	0.623912281	0.623912281	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.78E-12	1	0.015598339	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	6709351	G	A	CHD4	CCDS8552.1	r.?	-	-	intronic	23	0	0	25	4	16	24	2	8.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.798722555	0.798722555	1	0.811070175	0.811070175	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.00000727	1	0.006413403	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	84850892	A	G	-	-	-	-	-	-	50	0	0	42	11	26.2	36	3	8.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	1.400690978	1.400690978	1	0.977070175	0.977070175	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.81E-16	1	0.000788827	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	8804460	C	A	MFAP5	CCDS8595.1	r.?	-	-	intronic	39	0	0	38	9	23.7	33	4	12.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.183107784	1.183107784	1	1.182403509	1.182403509	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.79E-13	1	0.0000228	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	10516071	C	A	AC022075.1	ENST00000500682	r.?	-	-	upstream	43	0	0	33	5	15.2	27	2	7.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.758786427	0.758786427	1	0.723122807	0.723122807	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.00000066	1	0.00807567	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	11751810	C	T	-	-	-	-	-	-	40	0	0	42	8	19	39	3	7.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.948483034	0.948483034	1	0.752438596	0.752438596	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.96E-11	1	0.000998458	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	84967546	T	A	-	-	-	-	-	-	51	0	0	51	18	35.3	24	2	8.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.115181637	1.057590818	2	0.894070175	0.894070175	1	NA	NA	1	NA	NA	1	4	NA	1	1	9.10E-29	1	0.006413403	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	84968765	C	A	-	-	-	-	-	-	36	0	0	52	11	21.2	31	4	12.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	5.626372055	3	3	3	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	1.694307385	0.847153693	2	1.599380943	1.599380943	1	NA	NA	1	NA	NA	0	4	NA	1	1	2.44E-15	1	0.0000177	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	84980224	C	G	-	-	-	-	-	-	23	0	0	39	4	10.3	25	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5	5	3	3	2	2	1	1	NA	NA	NA	NA	NA	NA	0.720177645	0.720177645	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.0000447	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	85033558	C	A	CADM2	ENST00000383699	r.?	-	-	intronic	42	0	0	37	10	27	30	6	20	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	1.443460168	1.443460168	1	2.354385965	1.177192982	2	NA	NA	0	NA	NA	1	4	NA	1	1	3.01E-15	1	8.37E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	85042143	C	T	-	-	-	-	-	-	43	0	0	24	7	29.2	26	6	23.1	0	0	NA	0	0	NA	1	0	0	1	TRUE	FALSE	1	1.304475247	1	1	0	0	1	0.695524753	NA	2	NA	0	NA	0.304475247	0.873668663	0.873668663	1	1.865649572	1.865649572	1	NA	NA	1	0	NA	0	4	NA	1	1	2.51E-11	1	3.30E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	85065095	T	C	C2orf89	CCDS46349.1	r.?	-	-	intronic	59	0	0	47	12	25.5	47	5	10.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.527964072	1.527964072	1	1.141824561	1.141824561	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.09E-17	1	0.00000402	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	85068274	C	A	C2orf89	CCDS46349.1	r.?	-	-	intronic	45	0	0	38	15	39.5	38	8	21.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.366846307	1.183423154	2	2.272877193	1.136438596	2	NA	NA	1	NA	NA	1	4	NA	1	1	4.24E-25	1	1.67E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	85081995	T	A	-	-	-	-	-	-	45	0	0	40	16	40	37	8	21.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.396806387	1.198403194	2	2.326736842	1.163368421	2	NA	NA	1	NA	NA	1	4	NA	1	1	8.56E-27	1	1.33E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	85085748	G	T	-	-	-	-	-	-	49	0	0	38	23	60.5	32	4	12.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	3	2	3	0	0	1	1	NA	NA	NA	NA	NA	NA	2.415169661	1.20758483	2	1.221491228	1.221491228	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.72E-43	1	0.0000201	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	93552978	C	T	-	-	-	-	-	-	47	0	0	45	9	20	48	5	10.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0.998403194	0.998403194	1	0.976863788	0.976863788	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.47E-12	1	0.00000447	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	85104538	T	C	SSX2IP	CCDS699.1	r.?	-	-	downstream	36	0	0	42	8	19	33	2	6.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	0.948483034	0.948483034	1	0.718087719	0.718087719	1	NA	NA	0	NA	NA	1	4	NA	1	1	3.96E-11	1	0.011909843	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	85111382	A	G	-	-	-	-	-	-	71	0	0	32	13	40.6	37	6	16.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.620758483	0.810379242	2	1.421052632	1.421052632	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.88E-22	1	3.18E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	12752233	T	A	-	-	-	-	-	-	65	0	0	41	5	12.2	27	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.609025948	0.609025948	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.00000202	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	85118331	T	A	-	-	-	-	-	-	44	0	0	39	6	15.4	35	3	8.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	0.768770459	0.768770459	1	0.78133952	0.78133952	1	NA	NA	1	NA	NA	0	4	NA	1	1	4.43E-08	1	0.000725791	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	85128866	A	G	CADM2	ENST00000383699	r.?	-	-	intronic	55	0	0	39	7	17.9	37	2	5.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	0.95696063	0.95696063	1	0.635684211	0.635684211	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.04E-09	1	0.014826063	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	15256137	G	T	RERG	CCDS8673.1	r.?	-	-	downstream	63	0	0	42	9	21.4	30	5	16.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.068291417	1.068291417	1	1.631912281	1.631912281	1	NA	NA	1	NA	NA	1	4	NA	1	1	7.51E-13	1	0.000000401	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	85159475	T	A	ZSCAN2	CCDS10329.2	r.?	-	-	intronic	48	0	0	39	17	43.6	37	5	13.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3.293619843	2	2	1	1	1	0.706380157	NA	3	NA	1	NA	0.293619843	2.176518962	1.088259481	2	1.358849205	1.358849205	1	NA	NA	1	NA	NA	0	4	NA	1	1	3.51E-29	1	0.00000119	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	85166636	G	A	-	-	-	-	-	-	14	0	0	40	15	37.5	21	5	23.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	5.626372055	3	3	3	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	2.997005988	0.999001996	3	2.950795847	0.983598616	3	NA	NA	1	NA	NA	0	4	NA	1	1	1.09E-24	1	5.95E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	85201254	G	A	KCMF1	CCDS46350.1	r.?	-	-	intronic	22	0	0	42	13	31	34	5	14.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.85752495	0.928762475	2	1.583473684	1.583473684	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.72E-20	1	0.000000771	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	85225658	C	T	-	-	-	-	-	-	54	1	1.9	50	16	32	36	9	25	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.91744511	0.958722555	2	2.692982456	1.346491228	2	NA	NA	1	NA	NA	1	4	NA	0.237137336	1	6.40E-25	1	1.63E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	85229007	G	A	-	-	-	-	-	-	47	0	0	47	6	12.8	37	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.766978044	0.766978044	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.000000141	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	85229043	A	T	-	-	-	-	-	-	65	0	0	51	4	7.8	44	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.467377246	0.467377246	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.000129466	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	85242546	G	A	-	-	-	-	-	-	47	0	0	39	21	53.8	26	3	11.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.147704591	1.073852295	2	1.00877193	1.00877193	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.73E-38	1	0.000298167	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	85247205	C	G	-	-	-	-	-	-	17	0	0	43	16	37.2	25	7	28	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	5.626372055	3	3	3	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	2.97302994	0.99100998	3	3.471524526	1.157174842	3	NA	NA	1	NA	NA	0	4	NA	1	1	3.56E-26	1	3.47E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	85260137	C	G	-	-	-	-	-	-	67	0	0	53	17	32.1	36	12	33.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.923437126	0.961718563	2	3.587052632	1.793526316	2	NA	NA	1	NA	NA	1	4	NA	1	1	2.08E-26	1	2.73E-19	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	85265367	C	T	-	-	-	-	-	-	51	0	0	49	20	40.8	35	6	17.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.444742515	1.222371257	2	1.842	1.842	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.35E-33	1	2.24E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	85291375	G	A	-	-	-	-	-	-	56	0	0	57	6	10.5	40	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5	5	3	3	2	2	1	1	NA	NA	NA	NA	NA	NA	0.734161677	0.734161677	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.000000456	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	85293834	A	C	-	-	-	-	-	-	54	0	0	49	5	10.2	30	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5	5	3	3	2	2	1	1	NA	NA	NA	NA	NA	NA	0.713185629	0.713185629	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.00000496	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	85304333	T	C	-	-	-	-	-	-	55	0	0	33	10	30.3	46	8	17.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.209580838	1.209580838	1	1.526315789	1.526315789	1	NA	NA	1	NA	NA	1	4	NA	1	1	8.14E-16	1	8.61E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	85340544	T	C	ZNF592	CCDS32317.1	r.?	-	-	intronic	39	0	0	31	10	32.3	34	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3.293619843	2	2	1	1	1	0.706380157	NA	3	NA	1	NA	0.293619843	1.612421158	1.612421158	1	0	0	1	NA	NA	1	NA	NA	0	3	NA	1	1	3.94E-16	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	85375024	T	C	-	-	-	-	-	-	47	0	0	22	7	31.8	23	5	21.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1	1.304475247	1	1	0	0	1	0.695524753	NA	2	NA	0	NA	0.304475247	0.951461078	0.951461078	1	1.752579901	1.752579901	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.25E-11	1	9.75E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	85392327	C	G	-	-	-	-	-	-	49	0	0	36	13	36.1	33	3	9.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	1.802117764	0.901058882	2	0.826766236	0.826766236	1	NA	NA	1	NA	NA	0	4	NA	1	1	2.53E-21	1	0.000609557	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	85397065	G	A	-	-	-	-	-	-	53	0	0	50	15	30	28	5	17.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5	5	3	3	2	2	1	1	NA	NA	NA	NA	NA	NA	2.09760479	1.048802395	2	2.107175439	2.107175439	1	NA	NA	1	NA	NA	1	4	NA	1	1	5.83E-23	1	0.000000279	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	85451848	C	A	-	-	-	-	-	-	45	0	0	63	12	19	39	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.138483034	1.138483034	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	5.15E-16	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	85452186	C	G	-	-	-	-	-	-	57	0	0	53	6	11.3	35	2	5.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5	5	3	3	2	2	1	1	NA	NA	NA	NA	NA	NA	0.790097804	0.790097804	1	0.671	0.671	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.000000293	1	0.013332991	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	85458981	C	A	CADM2	ENST00000383699	r.?	-	-	intronic	44	0	0	40	13	32.5	39	6	15.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	1.737498351	1.05567348	1.645867197	1.812877193	1.812877193	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.30E-20	1	4.43E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	85496077	C	T	-	-	-	-	-	-	23	0	0	34	14	41.2	14	2	14.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	5.626372055	3	3	3	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	3.292710579	1.097570193	3	1.772957169	1.772957169	1	NA	NA	1	NA	NA	0	4	NA	1	1	7.74E-24	1	0.002185852	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	85500554	G	A	DACH2	CCDS48140.1	r.?	-	-	intronic	44	0	0	37	11	29.7	25	7	28	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1	1.304475247	1	1	0	0	1	0.695524753	NA	2	NA	0	NA	0.304475247	0.888628743	0.888628743	1	2.26139342	1.733565604	1.304475247	NA	NA	1	NA	NA	1	4	NA	1	1	3.70E-17	1	3.47E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	85503940	T	A	CDS1	CCDS3608.1	r.?	-	-	upstream	16	0	0	24	7	29.2	7	0	0	3	0	0	1	1	100	0	0	NA	1	FALSE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	1.457668663	1.457668663	1	0	NA	0	4.992015968	4.992015968	1	NA	NA	0	NA	NA	1	1	2.51E-11	0.005	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	85508235	C	A	-	-	-	-	-	-	22	0	0	26	10	38.5	9	4	44.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	5.626372055	3	3	3	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	3.076926148	1.025642049	3	5.504846035	1.834948678	3	NA	NA	1	NA	NA	0	4	NA	1	1	4.82E-17	1	7.72E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	17367990	G	A	-	-	-	-	-	-	55	0	0	47	6	12.8	33	2	6.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.638978044	0.638978044	1	0.596087719	0.596087719	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.000000141	1	0.011909843	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	85526759	G	A	-	-	-	-	-	-	56	0	0	45	12	26.7	52	6	11.5	155	0	0	364	68	18.7	314	14	4.5	4.74E-06	TRUE	TRUE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.332868263	1.332868263	1	1.08018592	1.08018592	1	0.933506986	0.933506986	1	0.422681447	0.680656078	0.620991218	4	3	1	1	6.03E-18	5.65E-83	0.000000261	1.17E-09	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	X	85583597	A	T	DACH2	CCDS48140.1	r.?	-	-	intronic	56	0	0	26	5	19.2	20	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1	1.304475247	1	1	0	0	1	0.695524753	NA	2	NA	0	NA	0.304475247	0.574467066	0.574467066	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.000000188	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	85624774	C	G	-	-	-	-	-	-	48	0	0	47	6	12.8	24	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	3	2	3	0	0	1	1	NA	NA	NA	NA	NA	NA	0.510978044	0.510978044	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	0.000000141	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	85636550	C	T	-	-	-	-	-	-	44	0	0	24	10	41.7	41	1	2.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.664670659	0.832335329	2	0.210526316	0.210526316	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.80E-17	1	0.18577148	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	85643645	A	G	-	-	-	-	-	-	38	0	0	38	20	52.6	25	5	20	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	3	2	3	0	0	1	1	NA	NA	NA	NA	NA	NA	2.099800399	1.0499002	2	1.954385965	1.954385965	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.94E-36	1	0.000000153	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	85652546	A	G	-	-	-	-	-	-	55	0	0	35	11	31.4	33	1	3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.253493014	1.253493014	1	0.263157895	0.263157895	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.82E-17	1	0.15245715	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	85680280	T	C	KIAA0182	CCDS10952.1	r.?	-	-	intronic	16	0	0	41	8	19.5	10	1	10	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	5.626372055	3	3	3	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	1.558443114	1.558443114	1	1.239830188	1.239830188	1	NA	NA	1	NA	NA	0	4	NA	1	1	3.22E-11	1	0.04888987	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	85784614	C	A	-	-	-	-	-	-	52	0	0	59	17	28.8	46	3	6.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.725700599	0.862850299	2	0.700175439	0.700175439	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.74E-25	1	0.001615827	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	85831696	T	C	C2orf68	CCDS42704.1	r.?	-	-	downstream	42	0	0	58	16	27.6	26	5	19.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.653796407	0.826898204	2	2.068210526	2.068210526	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.00E-23	1	0.000000188	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	85911031	C	A	-	-	-	-	-	-	46	0	0	26	4	15.4	27	1	3.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.768770459	0.768770459	1	0.361561404	0.361561404	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.00000856	1	0.126579904	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	85924425	C	A	-	-	-	-	-	-	62	0	0	42	13	31	33	6	18.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.85752495	0.928762475	2	1.960491228	1.960491228	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.72E-20	1	1.54E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	109842433	A	C	-	-	-	-	-	-	55	0	0	27	7	25.9	36	5	13.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	1.033932136	1.033932136	1	1.497298246	1.497298246	1	NA	NA	0	NA	NA	1	4	NA	1	1	6.36E-11	1	0.00000104	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	85948021	G	A	-	-	-	-	-	-	45	0	0	54	18	33.3	32	6	18.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.995341317	0.997670659	2	2.025122807	2.025122807	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.12E-28	1	1.27E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	85952751	T	A	IRF8	CCDS10956.1	r.?	-	-	intronic	14	0	0	47	17	36.2	41	13	31.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	5.626372055	3	3	3	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	2.89310978	0.964369927	3	3.930261696	1.310087232	3	NA	NA	1	NA	NA	0	4	NA	1	1	1.81E-27	1	1.89E-20	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	85957367	A	G	-	-	-	-	-	-	46	0	0	55	13	23.6	33	7	21.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.414115768	1.414115768	1	2.283649123	1.141824561	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.46E-18	1	2.98E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	85957985	A	G	AKAP13	CCDS32320.1	r.?	-	-	intronic	47	0	0	36	19	52.8	36	9	25	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3.293619843	2	2	1	1	1	0.706380157	NA	3	NA	1	NA	0.293619843	2.635784431	1.317892216	2	2.516387417	1.09712489	2.293619843	NA	NA	0	NA	NA	1	4	NA	1	1	1.51E-34	1	1.63E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	28192665	G	T	-	-	-	-	-	-	26	0	0	23	6	26.1	26	2	7.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.302916168	1.302916168	1	0.752438596	0.752438596	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.47E-09	1	0.007502227	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	28324168	C	T	-	-	-	-	-	-	52	0	0	44	7	15.9	36	3	8.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.793730539	0.793730539	1	0.811070175	0.811070175	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.55E-09	1	0.000788827	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	86081811	T	G	CCDC81	CCDS8276.1	r.?	-	-	upstream	45	0	0	46	12	26.1	33	1	3	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	4	2.673496181	2	2	2	0	1	0.326503819	NA	2	NA	1	NA	0.673496181	1.563916168	1.563916168	1	0.28336278	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	8.12E-18	1	0.15245715	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	86122818	C	A	-	-	-	-	-	-	65	0	0	56	19	33.9	36	7	19.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.031293413	1.015646707	2	2.089754386	1.044877193	2	NA	NA	1	NA	NA	1	4	NA	1	1	6.79E-30	1	5.74E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	86154858	T	G	-	-	-	-	-	-	51	0	0	32	10	31.2	33	5	15.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.557508982	1.557508982	1	1.485333333	1.485333333	1	NA	NA	1	NA	NA	1	4	NA	1	1	5.70E-16	1	0.00000066	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	86178342	G	C	-	-	-	-	-	-	52	0	0	41	10	24.4	31	2	6.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	0.974051896	0.974051896	1	0.700175439	0.700175439	1	NA	NA	0	NA	NA	1	4	NA	1	1	9.51E-15	1	0.010558179	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	86234298	C	G	-	-	-	-	-	-	52	0	0	44	20	45.5	56	20	35.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	2.271367265	1.135683633	2	3.353272812	1.676636406	2	NA	NA	1	NA	NA	0	4	NA	1	1	1.50E-34	1	6.31E-32	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	86260251	A	C	ME3	CCDS8277.1	r.?	-	-	intronic	48	0	0	43	11	25.6	23	5	21.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	2.673496181	2	2	2	0	1	0.326503819	NA	2	NA	1	NA	0.673496181	1.533956088	1.533956088	1	2.049657443	2.049657443	1	NA	NA	1	NA	NA	0	4	NA	1	1	2.42E-16	1	9.75E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	28842271	G	T	-	-	-	-	-	-	52	0	0	46	18	39.1	30	7	23.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.951878244	0.975939122	2	2.276859649	1.138429825	2	NA	NA	1	NA	NA	1	4	NA	1	1	9.41E-30	1	1.44E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	86287956	T	G	-	-	-	-	-	-	46	0	0	51	20	39.2	33	9	27.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.956870259	0.97843513	2	2.667736842	1.333868421	2	NA	NA	1	NA	NA	1	4	NA	1	1	6.38E-33	1	6.76E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	71628154	C	A	COL13A1	CCDS44420.1	r.?	-	-	intronic	36	0	0	41	14	34.1	30	2	6.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.297222263	4	2	2	2	2	0.702777737	1	3	NA	2	NA	0.297222263	NA	2.144630237	0.933575419	2.297222263	0.721719298	0.721719298	1	NA	NA	0	NA	NA	0	4	NA	1	1	1.90E-22	1	0.009909649	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	86303710	T	A	COL24A1	CCDS41353.1	r.?	-	-	intronic	54	0	0	44	8	18.2	40	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	0.908546906	0.908546906	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	5.90E-11	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	86326554	A	G	-	-	-	-	-	-	50	0	0	37	5	13.5	28	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.538922156	0.538922156	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.00000119	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	86353834	C	T	PTCD3	CCDS33235.1	r.?	-	-	intronic	20	0	0	46	5	10.9	27	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.653129741	0.653129741	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.00000361	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	86360611	T	C	GRM3	CCDS5600.1	r.?	-	-	intronic	46	0	0	55	10	18.2	44	1	2.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.090546906	1.090546906	1	0.247754386	0.247754386	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.33E-13	1	0.197923942	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	86368156	C	G	SLITRK6	CCDS41903.1	r.3087g>c	c.2488G>C	p.E830Q	missense	54	0	0	45	5	11.1	30	0	0	154	1	0.6	245	12	4.9	187	0	0	1	TRUE	TRUE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.665113772	0.665113772	1	0	0	1	0.293608782	0.293608782	1	0	0	1	3	2	1	0.537880351	0.00000323	6.19E-09	1	1	YES	1_1	0_0	somatic	custom.pulldown.HiSeq
PD9852b	3	86369367	A	T	-	-	-	-	-	-	42	0	0	43	10	23.3	41	4	9.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	1.245652664	1.245652664	1	1.153649123	1.153649123	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.61E-14	1	0.0000546	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	86375687	C	T	CA2	CCDS6239.1	r.?	-	-	upstream	21	0	0	35	5	14.3	12	2	16.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0.713858283	0.713858283	1	1.568617814	1.568617814	1	NA	NA	1	NA	NA	0	4	NA	1	1	0.000000895	1	0.001595918	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	86406695	C	T	-	-	-	-	-	-	58	0	0	29	14	48.3	27	4	14.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1	3	1	2	0	1	1	1	NA	NA	NA	NA	NA	NA	1.445143713	1.445143713	1	1.446245614	1.446245614	1	NA	NA	0	NA	NA	1	4	NA	1	1	4.41E-25	1	0.00001	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	86428366	C	A	-	-	-	-	-	-	39	0	0	32	18	56.2	28	6	21.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.243512974	1.121756487	2	1.877192982	1.877192982	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.68E-33	1	5.36E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	86439881	A	T	GRM3	CCDS5600.1	r.?	-	-	intronic	47	0	0	53	24	45.3	36	7	19.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.714383234	1.357191617	2	2.089754386	1.044877193	2	NA	NA	1	NA	NA	1	4	NA	1	1	4.04E-41	1	5.74E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	102625145	A	G	-	-	-	-	-	-	19	0	0	36	23	63.9	24	6	25	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.550898204	1.275449102	2	2.192982456	1.096491228	2	NA	NA	1	NA	NA	1	4	NA	1	1	2.59E-44	1	1.95E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	86447276	C	A	-	-	-	-	-	-	57	0	0	36	11	30.6	38	6	15.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.833556886	0.916778443	2	1.701964912	1.701964912	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.62E-17	1	3.76E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	86513230	T	C	-	-	-	-	-	-	55	0	0	38	6	15.8	40	6	15	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0.788738523	0.788738523	1	1.408938156	1.408938156	1	NA	NA	1	NA	NA	0	4	NA	1	1	3.76E-08	1	5.18E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	86549539	A	T	KIAA1324L	CCDS47632.1	r.?	-	-	intronic	64	0	0	57	9	15.8	33	1	3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.946738523	0.946738523	1	0.323157895	0.323157895	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.42E-11	1	0.15245715	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	29670504	G	A	TMTC1	CCDS8718.1	r.2175c>u	c.1701C>T	p.R567R	silent	48	0	0	43	8	18.6	30	6	20	270	0	0	114	19	16.7	132	27	20.5	3.44E-27	TRUE	TRUE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.92851497	0.92851497	1	1.954385965	1.954385965	1	0.833666667	0.833666667	1	2.003245614	1.001622807	2	4	3	1	1	4.85E-11	2.46E-23	8.37E-09	4.26E-35	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	3	86568685	A	T	-	-	-	-	-	-	49	0	0	44	13	29.5	27	7	25.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	1.577113888	1.577113888	1	3.048929825	1.016309942	3	NA	NA	0	NA	NA	1	4	NA	1	1	5.49E-20	1	6.36E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	86601935	C	G	-	-	-	-	-	-	38	0	0	52	8	15.4	36	1	2.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	0.823306911	0.823306911	1	0.329614035	0.329614035	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.42E-10	1	0.165106833	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	86609456	T	G	-	-	-	-	-	-	51	0	0	37	22	59.5	36	5	13.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	3	2	3	0	0	1	1	NA	NA	NA	NA	NA	NA	2.375249501	1.18762475	2	1.358298246	1.358298246	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.08E-41	1	0.00000104	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	86612845	G	A	FOXL1	CCDS10959.1	r.731g>a	c.516G>A	p.A172A	silent	15	0	0	30	5	16.7	6	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	6	5.626372055	3	3	3	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	1.334666667	1.334666667	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	0.000000401	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	86643041	C	G	RASA1	CCDS47243.1	r.?	-	-	intronic	53	0	0	50	16	32	37	7	18.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.91744511	0.958722555	2	2.035894737	1.017947368	2	NA	NA	1	NA	NA	1	4	NA	1	1	6.40E-25	1	7.05E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	86696375	G	A	-	-	-	-	-	-	51	0	0	24	12	50	32	6	18.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	3	2	3	0	0	1	1	NA	NA	NA	NA	NA	NA	1.996007984	0.998003992	2	1.837122807	1.837122807	1	NA	NA	0	NA	NA	1	4	NA	1	1	6.25E-22	1	1.27E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	86713658	C	A	-	-	-	-	-	-	46	0	0	41	10	24.4	25	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.218051896	1.218051896	1	0	0	1	NA	NA	0	NA	NA	1	4	NA	1	1	9.51E-15	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	86721153	T	A	-	-	-	-	-	-	36	0	0	51	16	31.4	43	10	23.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.881493014	0.940746507	2	2.509859649	1.254929825	2	NA	NA	1	NA	NA	1	4	NA	1	1	9.28E-25	1	1.61E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	86775004	C	G	-	-	-	-	-	-	52	0	0	33	9	27.3	25	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.362820359	1.362820359	1	0	0	1	NA	NA	0	NA	NA	1	4	NA	1	1	6.76E-14	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	86860369	T	A	-	-	-	-	-	-	41	0	0	32	7	21.9	26	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	0.874251497	0.874251497	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	2.36E-10	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	86922412	C	A	VPS24	ENST00000409384	r.?	-	-	intronic	32	0	0	33	11	33.3	33	2	6.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.995341317	0.997670659	2	0.657087719	0.657087719	1	NA	NA	1	NA	NA	1	4	NA	1	1	8.54E-18	1	0.011909843	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	86939885	C	T	TMEM135	CCDS8280.1	r.?	-	-	intronic	76	1	1.3	54	16	29.6	31	6	19.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	2.673496181	2	2	2	0	1	0.326503819	NA	2	NA	1	NA	0.673496181	1.773636727	0.886818363	2	1.832412645	1.832412645	1	NA	NA	1	NA	NA	0	4	NA	0.316790122	1	2.69E-24	1	1.03E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	86958521	G	A	-	-	-	-	-	-	58	0	0	43	11	25.6	37	5	13.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	1.368614085	1.368614085	1	1.589210526	1.589210526	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.42E-16	1	0.00000119	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	86985534	C	A	-	-	-	-	-	-	46	0	0	39	24	61.5	30	8	26.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.45508982	1.22754491	2	2.342105263	1.171052632	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.39E-45	1	2.07E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	87022452	C	A	CROT	CCDS5604.1	r.?	-	-	intronic	69	0	0	53	14	26.4	33	2	6.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.581892216	0.790946108	2	0.657087719	0.657087719	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.22E-20	1	0.011909843	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	87026309	C	T	-	-	-	-	-	-	43	0	0	43	5	11.6	34	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	0.463073852	0.463073852	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	0.00000257	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	87037936	T	C	-	-	-	-	-	-	51	0	0	33	19	57.6	29	6	20.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1	3	1	2	0	1	1	1	NA	NA	NA	NA	NA	NA	1.723401198	1.723401198	1	2.022789474	2.022789474	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.46E-35	1	6.72E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	87045752	A	T	-	-	-	-	-	-	47	0	0	52	17	32.7	41	5	12.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.632389222	0.816194611	2	1.192175439	1.192175439	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.42E-26	1	0.00000202	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	87052570	T	C	AGBL1	ENST00000421325	r.?	-	-	intronic	46	0	0	29	16	55.2	30	12	40	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3.293619843	2	2	1	1	1	0.706380157	NA	3	NA	1	NA	0.293619843	2.755592814	1.377796407	2	4.026219867	1.755399823	2.293619843	NA	NA	1	NA	NA	1	4	NA	1	1	9.74E-30	1	1.94E-20	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	87056225	G	C	-	-	-	-	-	-	60	0	0	47	7	14.9	40	4	10	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.743810379	0.743810379	1	0.977192982	0.977192982	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.12E-09	1	0.0000495	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	87076878	G	C	CD8B	CCDS1997.1	r.?	-	-	intronic	31	0	0	42	7	16.7	20	0	0	1	0	0	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.000666667	1.000666667	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	1.81E-09	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	87099223	C	T	-	-	-	-	-	-	20	0	0	53	9	17	25	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	0.848642715	0.848642715	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	7.10E-12	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	87125798	T	C	-	-	-	-	-	-	46	0	0	37	22	59.5	27	9	33.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	3	2	3	0	0	1	1	NA	NA	NA	NA	NA	NA	2.375249501	1.18762475	2	3.254052632	1.084684211	3	NA	NA	0	NA	NA	1	4	NA	1	1	2.08E-41	1	8.44E-15	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	87166318	A	T	-	-	-	-	-	-	54	0	0	42	15	35.7	33	8	24.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	1.908575111	0.954287556	2	2.848807018	0.949602339	3	NA	NA	0	NA	NA	1	4	NA	1	1	2.65E-24	1	4.85E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	87185550	T	G	-	-	-	-	-	-	54	0	0	22	8	36.4	22	6	27.3	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	NA	3	NA	2	NA	1	NA	1	NA	NA	NA	NA	NA	NA	NA	NA	1	2.667736842	1.333868421	2	NA	NA	1	NA	NA	1	NA	NA	1	1	1.17E-13	1	1.09E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	87204608	G	A	-	-	-	-	-	-	39	0	0	16	9	56.2	18	4	22.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.243512974	1.121756487	2	1.947368421	1.947368421	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.16E-17	1	0.00000181	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	31888939	C	A	-	-	-	-	-	-	33	0	0	33	14	42.4	16	1	6.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	2.11661477	1.058307385	2	0.605859649	0.605859649	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.57E-24	1	0.077068876	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	87206397	C	T	SH3GLB1	CCDS710.1	r.?	-	-	intronic	29	0	0	37	7	18.9	25	3	12	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	0.943491018	0.943491018	1	1.412631579	1.412631579	1	NA	NA	0	NA	NA	1	4	NA	1	1	7.05E-10	1	0.00026475	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	40446756	C	A	SLC2A13	CCDS8736.2	r.?	-	-	intronic	49	0	0	49	20	40.8	29	9	31	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	2.036742515	1.018371257	2	3.029298246	1.514649123	2	NA	NA	1	NA	NA	1	4	NA	1	1	2.35E-33	1	1.79E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	87226432	A	T	-	-	-	-	-	-	50	0	0	45	5	11.1	28	4	14.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.665113772	0.665113772	1	1.540385965	1.540385965	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.00000323	1	0.0000116	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	87227589	A	T	-	-	-	-	-	-	62	0	0	40	8	20	29	6	20.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.998403194	0.998403194	1	2.022789474	2.022789474	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.61E-11	1	6.72E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	87274525	C	T	-	-	-	-	-	-	47	0	0	45	8	17.8	32	3	9.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3.293619843	2	2	1	1	1	0.706380157	NA	3	NA	1	NA	0.293619843	0.888578842	0.888578842	1	0.946161669	0.946161669	1	NA	NA	1	NA	NA	0	4	NA	1	1	7.14E-11	1	0.000556213	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	87285944	G	A	CHMP2B	CCDS2918.1	r.?	-	-	intronic	52	0	0	39	17	43.6	42	7	16.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	2.330920864	1.165460432	2	1.965912281	1.965912281	1	NA	NA	0	NA	NA	1	4	NA	1	1	3.51E-29	1	1.81E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	87292110	C	A	-	-	-	-	-	-	59	0	0	43	8	18.6	36	8	22.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	3	2	3	0	0	1	1	NA	NA	NA	NA	NA	NA	0.74251497	0.74251497	1	2.169368421	1.084684211	2	NA	NA	0	NA	NA	1	4	NA	1	1	4.85E-11	1	1.04E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	87333102	C	T	-	-	-	-	-	-	44	0	0	35	17	48.6	25	4	16	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.91211976	1.45605988	2	1.723508772	1.723508772	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.18E-30	1	0.00000727	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	87365057	A	G	-	-	-	-	-	-	43	0	0	48	13	27.1	36	7	19.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	1.448806317	1.448806317	1	2.283754386	1.141877193	2	NA	NA	0	NA	NA	1	4	NA	1	1	2.00E-19	1	5.74E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	87374707	A	G	-	-	-	-	-	-	43	0	0	41	24	58.5	34	9	26.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.335329341	1.167664671	2	2.324561404	1.162280702	2	NA	NA	1	NA	NA	1	4	NA	1	1	8.33E-45	1	9.15E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	87388044	T	C	MAPK10	CCDS5429.1	r.?	-	-	intronic	48	0	0	45	10	22.2	22	5	22.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	1.108227545	1.108227545	1	2.062372918	2.062372918	1	NA	NA	1	NA	NA	0	4	NA	1	1	2.66E-14	1	7.67E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	41090870	C	G	-	-	-	-	-	-	39	0	0	35	4	11.4	31	3	9.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.56908982	0.56908982	1	0.947877193	0.947877193	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.0000289	1	0.000505952	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	87480966	A	G	TMEM161B	ENST00000514135	r.?	-	-	downstream	48	0	0	48	14	29.2	38	1	2.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.749668663	0.874834331	2	0.280070175	0.280070175	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.51E-21	1	0.173434892	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	87495851	C	A	-	-	-	-	-	-	55	0	0	41	12	29.3	28	1	3.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3.293619843	2	2	1	1	1	0.706380157	NA	3	NA	1	NA	0.293619843	1.462660679	1.462660679	1	0.362359788	0.362359788	1	NA	NA	0	NA	NA	0	4	NA	1	1	1.69E-18	1	0.130947004	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	87528718	G	A	CPNE3	CCDS6243.1	r.?	-	-	intronic	55	0	0	54	8	14.8	46	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0.738818363	0.738818363	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	3.31E-10	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	87550175	G	A	-	-	-	-	-	-	38	0	0	42	7	16.7	38	1	2.6	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	6	5.626372055	3	3	3	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	1.334666667	1.334666667	1	0.322355849	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	1.81E-09	1	0.173434892	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	87584389	C	A	-	-	-	-	-	-	11	0	0	34	16	47.1	9	1	11.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	5.626372055	3	3	3	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	3.764239521	1.254746507	3	1.376211509	1.376211509	1	NA	NA	1	NA	NA	0	4	NA	1	1	3.09E-28	1	0.044110422	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	87596471	G	A	GRID1	CCDS31236.1	r.?	-	-	intronic	33	0	0	33	6	18.2	20	1	5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.726546906	0.726546906	1	0.438596491	0.438596491	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.54E-08	1	0.09538952	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	87633293	G	T	JPH3	CCDS10962.1	r.?	-	-	upstream	35	0	0	43	4	9.3	30	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	6	5.626372055	3	3	3	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	0.743257485	0.743257485	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	0.000066	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	87690064	T	C	-	-	-	-	-	-	49	0	0	40	18	45	29	4	13.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3.293619843	2	2	1	1	1	0.706380157	NA	3	NA	1	NA	0.293619843	2.246407186	1.123203593	2	1.389045854	1.389045854	1	NA	NA	0	NA	NA	0	4	NA	1	1	3.90E-31	1	0.0000134	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	87712393	T	C	-	-	-	-	-	-	37	0	0	42	9	21.4	34	1	2.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.068291417	1.068291417	1	0.341385965	0.341385965	1	NA	NA	0	NA	NA	1	4	NA	1	1	7.51E-13	1	0.156694864	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	87720285	G	A	HTR1E	CCDS5006.1	r.?	-	-	intronic	15	0	0	21	10	47.6	12	3	25	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.900199601	0.9500998	2	2.192982456	2.192982456	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.28E-18	1	0.0000266	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	87731964	A	G	-	-	-	-	-	-	65	0	0	47	21	44.7	43	11	25.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	2.231431138	1.115715569	2	2.501614035	1.250807018	2	NA	NA	1	NA	NA	1	4	NA	1	1	5.29E-36	1	2.42E-16	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	87800222	G	T	-	-	-	-	-	-	41	0	0	44	17	38.6	25	7	28	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.312918164	1.156459082	2	3.016140351	1.508070175	2	NA	NA	1	NA	NA	1	4	NA	1	1	4.61E-28	1	3.47E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	87801905	G	A	-	-	-	-	-	-	64	0	0	37	7	18.9	28	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.943491018	0.943491018	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	7.05E-10	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	87908246	C	T	RAB38	CCDS8281.1	r.?	-	-	intronic	22	0	0	45	11	24.4	15	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.673496181	2	2	1	0	1	0.326503819	NA	2	NA	1	NA	0.673496181	1.218051896	1.218051896	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	4.24E-16	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	45411065	G	T	DBX2	CCDS31781.1	r.?	-	-	intronic	49	0	0	38	8	21.1	33	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.053315369	1.053315369	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	1.67E-11	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	87944725	A	T	ZNF292	CCDS47457.1	r.?	-	-	intronic	62	0	0	29	11	37.9	29	2	6.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.512974052	1.512974052	1	0.605263158	0.605263158	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.56E-18	1	0.009279585	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	119375542	G	A	-	-	-	-	-	-	42	0	0	41	22	53.7	30	8	26.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.143712575	1.071856287	2	2.342105263	1.171052632	2	NA	NA	1	NA	NA	1	4	NA	1	1	5.33E-40	1	2.07E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	87994806	G	C	-	-	-	-	-	-	56	0	0	62	5	8.1	33	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.485353293	0.485353293	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.000016	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	87995611	T	C	-	-	-	-	-	-	51	0	0	53	20	37.7	33	9	27.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.88199002	0.94099501	2	2.667736842	1.333868421	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.65E-32	1	6.76E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	87997342	A	G	-	-	-	-	-	-	15	0	0	18	4	22.2	14	2	14.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.330227545	1.330227545	1	1.540385965	1.540385965	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.00000181	1	0.002185852	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	51292725	A	G	-	-	-	-	-	-	48	0	0	47	25	53.2	30	8	26.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	2.655752495	1.327876248	2	2.609105263	1.304552632	2	NA	NA	1	NA	NA	1	4	NA	1	1	3.98E-45	1	2.07E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	88066279	A	C	-	-	-	-	-	-	32	0	0	41	18	43.9	28	7	25	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	2.346959311	1.173479655	2	2.942982456	0.980994152	3	NA	NA	0	NA	NA	1	4	NA	1	1	6.91E-31	1	8.44E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	53742033	C	A	-	-	-	-	-	-	37	0	0	32	6	18.8	27	5	18.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.938499002	0.938499002	1	1.807807018	1.807807018	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.27E-08	1	0.00000023	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	54312352	T	C	-	-	-	-	-	-	50	0	0	40	8	20	28	4	14.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.998403194	0.998403194	1	1.397385965	1.397385965	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.61E-11	1	0.0000116	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	88122310	G	A	-	-	-	-	-	-	38	0	0	57	5	8.8	35	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.527297405	0.527297405	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.0000105	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	88158221	A	G	-	-	-	-	-	-	56	0	0	40	8	20	32	8	25	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.198403194	1.198403194	1	2.692982456	1.346491228	2	NA	NA	1	NA	NA	1	4	NA	1	1	2.61E-11	1	3.69E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	88198939	T	A	-	-	-	-	-	-	44	0	0	43	23	53.5	41	7	17.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	2.670728543	1.335364271	2	1.553593696	1.553593696	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.04E-41	1	1.51E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	88231657	A	C	-	-	-	-	-	-	38	0	0	41	13	31.7	28	1	3.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.582469062	0.791234531	2	0.423789474	0.423789474	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.89E-20	1	0.130947004	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	88254865	G	T	HSD17B11	CCDS3619.1	r.?	-	-	downstream	54	0	0	51	7	13.7	49	1	2	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	0.683906188	0.683906188	1	0.181706865	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	7.46E-09	1	0.217776325	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	88263543	A	G	-	-	-	-	-	-	50	0	0	34	16	47.1	22	4	18.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	2.351239521	1.17561976	2	1.778491228	1.778491228	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.09E-28	1	0.00000425	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	61831069	C	T	-	-	-	-	-	-	47	0	0	40	10	25	36	3	8.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.248003992	1.248003992	1	0.811070175	0.811070175	1	NA	NA	1	NA	NA	1	4	NA	1	1	7.22E-15	1	0.000788827	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	88309664	A	T	-	-	-	-	-	-	43	0	0	41	15	36.6	28	5	17.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	1.95669045	0.978345225	2	2.107175439	2.107175439	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.71E-24	1	0.000000279	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	66672023	G	A	-	-	-	-	-	-	44	0	0	49	20	40.8	29	8	27.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	2.036742515	1.018371257	2	2.697052632	1.348526316	2	NA	NA	1	NA	NA	1	4	NA	1	1	2.35E-33	1	1.53E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	88328810	C	T	CNBD1	ENST00000319712	r.?	-	-	intronic	68	0	0	46	7	15.2	27	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0.758786427	0.758786427	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	3.53E-09	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	88338998	G	T	-	-	-	-	-	-	66	0	0	46	9	19.6	49	1	2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.97843513	0.97843513	1	0.195438596	0.195438596	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.82E-12	1	0.217776325	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	88483635	G	T	LDB3	CCDS41544.1	r.?	-	-	intronic	35	0	0	32	7	21.9	31	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.874251497	0.874251497	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	2.36E-10	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	88502468	C	A	CEP290	ENST00000309041	r.?	-	-	intronic	71	0	0	46	26	56.5	26	6	23.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	2.820489022	1.410244511	2	2.257315789	1.128657895	2	NA	NA	1	NA	NA	1	4	NA	1	1	7.59E-48	1	3.30E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	88588381	T	G	ZNF804B	CCDS5613.1	r.?	-	-	intronic	51	0	0	53	6	11.3	28	2	7.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.677097804	0.677097804	1	0.764807018	0.764807018	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.000000293	1	0.008668191	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	88735686	C	T	GRM5	CCDS44694.1	r.?	-	-	intronic	45	0	0	39	5	12.8	23	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.673496181	2	2	1	0	1	0.326503819	NA	2	NA	1	NA	0.673496181	0.638978044	0.638978044	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	0.00000156	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	88770342	C	A	-	-	-	-	-	-	37	0	0	37	5	13.5	27	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.673922156	0.673922156	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.00000119	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	68290490	T	C	-	-	-	-	-	-	42	0	0	45	11	24.4	31	3	9.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.218051896	1.218051896	1	0.947877193	0.947877193	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.24E-16	1	0.000505952	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	88813274	G	A	-	-	-	-	-	-	51	0	0	34	17	50	33	6	18.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.996007984	0.998003992	2	1.596491228	1.596491228	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.64E-30	1	1.54E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	88817129	G	A	-	-	-	-	-	-	58	0	0	57	20	35.1	28	5	17.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.103197605	1.051598802	2	1.928175439	1.928175439	1	NA	NA	1	NA	NA	1	4	NA	1	1	9.67E-32	1	0.000000279	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	88919616	T	C	-	-	-	-	-	-	39	0	0	45	5	11.1	34	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3.293619843	2	2	1	1	1	0.706380157	NA	3	NA	1	NA	0.293619843	0.554113772	0.554113772	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.00000323	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	88919617	C	T	-	-	-	-	-	-	39	0	0	44	5	11.4	34	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3.293619843	2	2	1	1	1	0.706380157	NA	3	NA	1	NA	0.293619843	0.56908982	0.56908982	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.00000288	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	88939573	C	T	-	-	-	-	-	-	46	0	0	23	8	34.8	26	9	34.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1.539412018	3	1	2	0	1	0.460587982	1	1	NA	1	NA	0.539412018	NA	1.228936939	1.228936939	1	3.381087719	1.69054386	2	NA	NA	0	NA	NA	1	4	NA	1	1	1.79E-13	1	5.65E-15	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	88995168	G	T	CBFA2T3	CCDS10972.1	r.?	-	-	intronic	13	0	0	47	9	19.1	13	1	7.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	5.626372055	3	3	3	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	1.52647505	1.52647505	1	0.954669245	0.954669245	1	NA	NA	1	NA	NA	0	4	NA	1	1	2.24E-12	1	0.063085307	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	89002654	G	C	-	-	-	-	-	-	56	0	0	31	12	38.7	32	4	12.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1.539412018	3	1	2	0	1	0.460587982	1	1	NA	1	NA	0.539412018	NA	1.366662631	1.366662631	1	1.221491228	1.221491228	1	NA	NA	0	NA	NA	1	4	NA	1	1	3.16E-20	1	0.0000201	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	89015935	C	T	RPIA	CCDS2004.2	r.?	-	-	intronic	42	0	0	37	17	45.9	33	5	15.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.750335329	1.375167665	2	1.637333333	1.637333333	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.10E-29	1	0.00000066	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	69026624	G	A	RAP1B	CCDS8984.1	r.?	-	-	intronic	30	0	0	35	5	14.3	29	8	27.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.713858283	0.713858283	1	2.697052632	1.348526316	2	NA	NA	1	NA	NA	1	4	NA	1	1	0.000000895	1	1.53E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	69920132	G	T	FRS2	CCDS41809.1	r.?	-	-	intronic	41	0	0	40	18	45	34	6	17.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	2.246407186	1.123203593	2	1.719859649	1.719859649	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.90E-31	1	1.86E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	89112506	G	T	-	-	-	-	-	-	16	0	0	52	9	17.3	20	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.036618762	1.036618762	1	0	0	1	NA	NA	1	NA	NA	1	4	NA	1	1	5.92E-12	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	70189899	G	T	RAB3IP	CCDS44942.1	r.?	-	-	intronic	37	0	0	39	7	17.9	25	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.893570858	0.893570858	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	1.04E-09	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	89138983	T	C	-	-	-	-	-	-	42	0	0	33	13	39.4	44	11	25	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.360854291	1.180427146	2	2.692982456	1.346491228	2	NA	NA	1	NA	NA	1	4	NA	1	1	6.37E-22	1	3.22E-16	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	89151455	A	T	-	-	-	-	-	-	10	0	0	22	5	22.7	9	2	22.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.906187625	0.906187625	1	1.947368421	1.947368421	1	NA	NA	1	NA	NA	1	4	NA	1	1	7.67E-08	1	0.000879235	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	89153747	A	C	-	-	-	-	-	-	58	0	0	52	8	15.4	27	1	3.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.922770459	0.922770459	1	0.398561404	0.398561404	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.42E-10	1	0.126579904	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	89170159	G	T	EPHA3	CCDS2922.1	r.?	-	-	intronic	28	0	0	46	8	17.4	47	7	14.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	0.930229886	0.930229886	1	1.754017544	1.754017544	1	NA	NA	0	NA	NA	1	4	NA	1	1	8.61E-11	1	4.12E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	89178690	C	G	-	-	-	-	-	-	57	0	0	48	17	35.4	41	10	24.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.121173653	1.060586826	2	2.628350877	1.314175439	2	NA	NA	1	NA	NA	1	4	NA	1	1	2.80E-27	1	9.51E-15	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	89243659	G	A	-	-	-	-	-	-	42	0	0	30	9	30	17	1	5.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.19760479	1.19760479	1	0.51754386	0.51754386	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.54E-14	1	0.081683532	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	89360381	C	A	-	-	-	-	-	-	58	0	0	38	7	18.4	31	2	6.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.102530938	1.102530938	1	0.700175439	0.700175439	1	NA	NA	1	NA	NA	1	4	NA	1	1	8.61E-10	1	0.010558179	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	134215920	T	A	PWWP2B	CCDS7667.2	r.?	-	-	intronic	13	0	0	42	28	66.7	19	4	21.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.662674651	1.331337325	2	1.850877193	1.850877193	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.84E-54	1	0.00000228	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	89386615	T	A	-	-	-	-	-	-	54	0	0	57	7	12.3	30	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.737017964	0.737017964	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	1.66E-08	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	89400608	C	T	EPHA3	CCDS2922.1	r.?	-	-	intronic	12	0	0	22	7	31.8	8	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	1.700075309	1.700075309	1	0	0	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.25E-11	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	70189900	G	C	RAB3IP	CCDS44942.1	r.?	-	-	intronic	37	0	0	39	7	17.9	27	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.893570858	0.893570858	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	1.04E-09	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	89426450	T	C	-	-	-	-	-	-	47	0	0	61	14	23	35	7	20	0	0	NA	0	0	NA	2	0	0	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.378163673	1.378163673	1	2.154385965	1.077192982	2	NA	NA	1	0	0	1	4	NA	1	1	1.10E-19	1	4.65E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	89433222	G	A	-	-	-	-	-	-	15	0	0	43	7	16.3	21	3	14.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.976698603	0.976698603	1	1.540385965	1.540385965	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.15E-09	1	0.000155401	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	89444294	G	T	EPHA3	CCDS2922.1	r.?	-	-	intronic	55	0	0	49	9	18.4	37	2	5.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	0.983691374	0.983691374	1	0.635684211	0.635684211	1	NA	NA	0	NA	NA	1	4	NA	1	1	3.35E-12	1	0.014826063	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	89462229	G	A	-	-	-	-	-	-	66	0	0	32	5	15.6	36	3	8.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0.778754491	0.778754491	1	0.779612447	0.779612447	1	NA	NA	1	NA	NA	0	4	NA	1	1	0.000000562	1	0.000788827	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	89470298	G	C	-	-	-	-	-	-	32	0	0	35	4	11.4	23	0	0	1	0	0	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0.56908982	0.56908982	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	0.0000289	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	89507270	G	A	-	-	-	-	-	-	51	0	0	57	13	22.8	34	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.366179641	1.366179641	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	2.44E-18	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	72069004	A	T	THAP2	CCDS9001.1	r.?	-	-	intronic	47	0	0	37	12	32.4	22	2	9.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.617413174	0.808706587	2	0.889245614	0.889245614	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.03E-19	1	0.005403392	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	89521029	A	T	-	-	-	-	-	-	56	0	0	52	5	9.6	35	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.575233533	0.575233533	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.00000668	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	89540293	A	G	-	-	-	-	-	-	56	0	0	49	8	16.3	31	1	3.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	0.813698603	0.813698603	1	0.376701754	0.376701754	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.47E-10	1	0.143917729	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	89566566	A	C	-	-	-	-	-	-	46	0	0	48	20	41.7	43	8	18.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.498670659	1.249335329	2	2.003578947	1.001789474	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.40E-33	1	4.85E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	89589578	T	A	-	-	-	-	-	-	35	0	0	56	7	12.5	41	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.624001996	0.624001996	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	1.46E-08	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	89590023	G	A	-	-	-	-	-	-	43	0	0	44	16	36.4	40	5	12.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.181093812	1.090546906	2	1.346491228	1.346491228	1	NA	NA	1	NA	NA	1	4	NA	1	1	5.57E-26	1	0.00000178	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	89596081	T	A	-	-	-	-	-	-	72	0	0	82	5	6.1	48	2	4.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.365512974	0.365512974	1	0.452421053	0.452421053	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.0000619	1	0.024220359	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	89616810	T	A	-	-	-	-	-	-	73	0	0	50	13	26	38	5	13.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.673496181	2	2	1	0	1	0.326503819	NA	2	NA	1	NA	0.673496181	1.297924152	1.297924152	1	1.246796233	1.246796233	1	NA	NA	1	NA	NA	0	4	NA	1	1	3.65E-19	1	0.00000137	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	89698544	G	A	-	-	-	-	-	-	39	0	0	47	15	31.9	38	8	21.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.911453094	0.955726547	2	2.272877193	1.136438596	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.97E-23	1	1.67E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	89776122	C	T	C16orf7	CCDS42220.1	r.?	-	-	intronic	22	0	0	49	15	30.6	13	3	23.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	9.627507909	5.626372055	5	3	4	2	0.372492091	0.373627945	5	3	5	3	0.627507909	0.626372055	3.555574306	1.054286922	3.372492091	2.864007734	2.864007734	1	NA	NA	1	NA	NA	0	4	NA	1	1	4.10E-23	1	0.0000344	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	89792550	C	T	POLR3G	CCDS43337.1	r.?	-	-	intronic	62	0	0	52	7	13.5	45	3	6.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.808922156	0.808922156	1	0.721719298	0.721719298	1	NA	NA	1	NA	NA	1	4	NA	1	1	8.58E-09	1	0.001516071	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	89813132	C	T	FOXN3	CCDS32138.1	r.?	-	-	intronic	56	0	0	32	11	34.4	28	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.149838816	3	3	3	0	0	0.850161184	1	3	NA	1	NA	0.149838816	NA	1.768798046	0.956023756	1.850161184	0	0	1	NA	NA	1	NA	NA	0	3	NA	1	1	5.72E-18	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	89814980	G	C	LYSMD3	CCDS43338.1	r.722c>g	c.577C>G	p.Q193E	missense	50	0	0	45	12	26.7	26	1	3.8	153	0	0	321	34	10.6	255	9	3.5	0.001211792	TRUE	TRUE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.599868263	1.599868263	1	0.409333333	0.409333333	1	0.635153693	0.635153693	1	0.377017544	0.377017544	1	4	3	1	1	6.03E-18	1.33E-33	0.122190858	0.00000706	YES	1_1	0_1	somatic	custom.pulldown.HiSeq
PD9852b	14	89857048	C	T	FOXN3	CCDS32138.1	r.?	-	-	intronic	39	0	0	30	17	56.7	35	13	37.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.149838816	3	3	3	0	0	0.850161184	1	3	NA	1	NA	0.149838816	NA	2.915431662	1.022900627	2.850161184	3.625385965	1.208461988	3	NA	NA	1	NA	NA	0	4	NA	1	1	8.59E-32	1	1.63E-21	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	78136990	C	A	-	-	-	-	-	-	63	0	0	50	13	26	47	9	19.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.297924152	1.297924152	1	1.866438596	0.933219298	2	NA	NA	1	NA	NA	1	4	NA	1	1	3.65E-19	1	2.24E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	89911330	G	A	-	-	-	-	-	-	49	0	0	53	12	22.6	34	3	8.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.128195609	1.128195609	1	1.035929825	1.035929825	1	NA	NA	0	NA	NA	1	4	NA	1	1	5.39E-17	1	0.000666058	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	89931294	C	T	C7orf63	CCDS43613.1	r.?	-	-	intronic	47	0	0	46	16	34.8	33	3	9.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.085221557	1.042610778	2	0.980245614	0.980245614	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.31E-25	1	0.000609557	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	78249650	G	A	NAV3	CCDS41815.1	r.?	-	-	intronic	52	0	0	46	9	19.6	25	5	20	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.97843513	0.97843513	1	1.954385965	1.954385965	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.82E-12	1	0.000000153	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	85157729	T	C	-	-	-	-	-	-	47	0	0	53	25	47.2	31	4	12.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	2.356231537	1.178115768	2	1.260578947	1.260578947	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.35E-43	1	0.0000177	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	90017143	T	C	DEF8	CCDS10989.1	r.?	-	-	intronic	46	0	0	53	12	22.6	34	11	32.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	9.627507909	5.626372055	5	3	4	2	0.372492091	0.373627945	5	3	5	3	0.627507909	0.626372055	2.626012396	1.10685823	2.372492091	4.017049809	1.339016603	3	NA	NA	0	NA	NA	0	4	NA	1	1	5.39E-17	1	1.26E-17	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	90099113	C	G	-	-	-	-	-	-	31	0	0	26	5	19.2	20	1	5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.655761928	4	2	2	1	2	0.344238072	1	3	NA	1	NA	0.655761928	NA	1.084373356	1.084373356	1	0.538596491	0.538596491	1	NA	NA	0	NA	NA	0	4	NA	1	1	0.000000188	1	0.09538952	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	90105873	G	C	-	-	-	-	-	-	58	0	0	28	10	35.7	29	1	3.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	1.425149701	1.425149701	1	0.366245614	0.366245614	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.18E-16	1	0.135292269	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	90133963	A	G	LRRC8C	CCDS725.1	r.?	-	-	intronic	54	0	0	31	8	25.8	38	4	10.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.28794012	1.28794012	1	1.236052632	1.236052632	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.78E-12	1	0.0000403	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	90168950	G	T	-	-	-	-	-	-	20	0	0	36	13	36.1	17	4	23.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	9.627507909	5.626372055	5	3	4	2	0.372492091	0.373627945	5	3	5	3	0.627507909	0.626372055	4.19464812	0.959326634	4.372492091	2.913600942	0.971200314	3	NA	NA	0	NA	NA	0	4	NA	1	1	2.53E-21	1	0.00000141	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	90265822	C	T	-	-	-	-	-	-	39	0	0	47	20	42.6	30	7	23.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	2.126598802	1.063299401	2	2.188550603	1.094275301	2	NA	NA	1	NA	NA	0	4	NA	1	1	8.18E-34	1	1.44E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	90338814	C	T	CDK14	CCDS5619.1	r.103c>u	c.?	p.?	5'UTR variant	46	0	0	53	7	13.2	34	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.790946108	0.790946108	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	9.85E-09	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	90348705	C	G	CTSL1	CCDS6675.1	r.?	-	-	downstream	35	0	0	45	5	11.1	27	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	0.443113772	0.443113772	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	0.00000323	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	90360747	A	T	-	-	-	-	-	-	41	0	0	48	13	27.1	44	3	6.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.352836327	1.352836327	1	0.638718631	0.638718631	1	NA	NA	1	NA	NA	0	4	NA	1	1	2.00E-19	1	0.00142027	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	90449210	G	T	-	-	-	-	-	-	28	1	3.6	51	6	11.8	5	1	20	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.655761928	4	2	2	1	2	0.344238072	1	3	NA	1	NA	0.655761928	NA	0.666437792	0.666437792	1	2.154385965	2.154385965	1	NA	NA	0	NA	NA	1	4	NA	0.130947004	1	0.000000232	1	0.024751247	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	90472758	G	A	ENSG00000214888	ENST00000399186	r.1186c>u	c.?	p.?	3'UTR variant	19	0	0	29	10	34.5	12	1	8.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	1.377245509	1.377245509	1	0.894070175	0.894070175	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.79E-16	1	0.058377193	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	90525198	G	C	-	-	-	-	-	-	33	0	0	23	5	21.7	18	2	11.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.083267465	1.083267465	1	1.042614236	1.042614236	1	NA	NA	1	NA	NA	0	4	NA	1	1	9.75E-08	1	0.003626632	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	90618446	C	T	-	-	-	-	-	-	42	0	0	47	7	14.9	34	1	2.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.892810379	0.892810379	1	0.312385965	0.312385965	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.12E-09	1	0.156694864	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	90622557	C	T	-	-	-	-	-	-	48	0	0	50	6	12	41	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.719041916	0.719041916	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.000000206	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	90625072	T	A	-	-	-	-	-	-	49	0	0	37	15	40.5	22	4	18.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.673496181	2	2	1	0	1	0.326503819	NA	2	NA	1	NA	0.673496181	2.021766467	1.010883234	2	1.719067533	1.719067533	1	NA	NA	1	NA	NA	0	4	NA	1	1	2.58E-25	1	0.00000425	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	90670508	T	C	-	-	-	-	-	-	48	0	0	43	9	20.9	33	7	21.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.252331337	1.252331337	1	2.283649123	1.141824561	2	NA	NA	1	NA	NA	1	4	NA	1	1	9.45E-13	1	2.98E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	90677539	A	G	-	-	-	-	-	-	42	0	0	50	6	12	28	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.599041916	0.599041916	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.000000206	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	90750621	C	A	SNCA	CCDS43252.1	r.?	-	-	intronic	45	0	0	32	10	31.2	26	1	3.8	0	0	NA	2	2	100	0	0	NA	1	FALSE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	1.557508982	1.557508982	1	0.345243044	NA	0	4.992015968	2.496007984	2	NA	NA	0	NA	NA	1	1	5.70E-16	0.000025	0.122190858	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	87410326	C	A	-	-	-	-	-	-	52	0	0	42	8	19	33	4	12.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.948483034	0.948483034	1	1.182403509	1.182403509	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.96E-11	1	0.0000228	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	90906786	A	G	-	-	-	-	-	-	46	0	0	25	6	24	24	3	12.5	2	0	0	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	0.958083832	0.958083832	1	1.346491228	1.346491228	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.55E-09	1	0.000233853	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	90907950	C	T	BACH2	CCDS5026.1	r.?	-	-	intronic	41	0	0	30	15	50	18	5	27.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.996007984	0.998003992	2	2.438596491	1.219298246	2	NA	NA	1	NA	NA	1	4	NA	1	1	4.41E-27	1	2.54E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	90928633	A	C	-	-	-	-	-	-	41	0	0	43	9	20.9	22	1	4.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.252331337	1.252331337	1	0.484736842	0.484736842	1	NA	NA	1	NA	NA	1	4	NA	1	1	9.45E-13	1	0.104413009	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	90939316	C	T	-	-	-	-	-	-	55	0	0	48	7	14.6	46	2	4.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.874834331	0.874834331	1	0.463192982	0.463192982	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.81E-09	1	0.022369545	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	90975714	T	C	LIPA	CCDS7401.1	r.1621a>g	c.947A>G	p.N316S	missense	44	0	0	45	24	53.3	36	8	22.2	160	0	0	110	50	45.5	93	14	15.1	7.08E-13	TRUE	TRUE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.127744511	1.063872255	2	1.947368421	0.973684211	2	1.816367265	0.908183633	2	1.324561404	1.324561404	1	4	3	1	1	2.03E-43	4.15E-84	1.04E-11	6.26E-17	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	5	91003205	G	A	-	-	-	-	-	-	43	0	0	56	7	12.5	41	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.749001996	0.749001996	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	1.46E-08	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	91049069	C	G	-	-	-	-	-	-	42	0	0	35	18	51.4	27	7	25.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.051896208	1.025948104	2	2.271929825	1.135964912	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.60E-32	1	6.36E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	91140281	C	T	FAM190A	ENST00000509176	r.?	-	-	intronic	46	0	0	36	8	22.2	25	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	1.108227545	1.108227545	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	1.04E-11	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	91142118	T	A	-	-	-	-	-	-	63	1	1.6	25	9	36	32	7	21.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.437125749	1.437125749	1	1.921052632	1.921052632	1	NA	NA	1	NA	NA	1	4	NA	0.27078753	1	3.71E-15	1	2.36E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	91176973	C	A	FAM190A	CCDS47100.1	r.?	-	-	intronic	53	0	0	49	9	18.4	27	1	3.7	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	0.918530938	0.918530938	1	0.3361577	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	3.35E-12	1	0.126579904	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	91185312	T	A	-	-	-	-	-	-	55	0	0	45	8	17.8	29	8	27.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.066578842	1.066578842	1	2.973052632	1.486526316	2	NA	NA	1	NA	NA	1	4	NA	1	1	7.14E-11	1	1.53E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	91198165	G	T	-	-	-	-	-	-	42	0	0	48	6	12.5	32	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0.624001996	0.624001996	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	0.00000016	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	91345317	T	C	-	-	-	-	-	-	41	0	0	50	20	40	35	9	25.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.396806387	1.198403194	2	2.768385965	1.384192982	2	NA	NA	1	NA	NA	1	4	NA	1	1	3.90E-33	1	1.23E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	91368802	C	A	-	-	-	-	-	-	63	0	0	30	10	33.3	23	6	26.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.329341317	1.329341317	1	2.289473684	1.144736842	2	NA	NA	1	NA	NA	1	4	NA	1	1	2.68E-16	1	1.47E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	91383540	A	G	-	-	-	-	-	-	67	0	0	34	4	11.8	31	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.673496181	2	2	1	0	1	0.326503819	NA	2	NA	1	NA	0.673496181	0.589057884	0.589057884	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	0.0000257	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	91416484	A	C	-	-	-	-	-	-	47	0	0	38	5	13.2	39	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.790946108	0.790946108	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.00000137	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	2732542	G	A	KCNQ1	CCDS7736.1	r.?	-	-	intronic	29	0	0	36	15	41.7	31	5	16.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	2.081670659	1.040835329	2	1.573280702	1.573280702	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.54E-25	1	0.000000476	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	91497417	A	G	-	-	-	-	-	-	57	0	0	42	10	23.8	49	8	16.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.1880998	1.1880998	1	1.53104613	1.53104613	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.24E-14	1	1.47E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	91537301	G	A	-	-	-	-	-	-	51	0	0	47	6	12.8	35	3	8.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0.638978044	0.638978044	1	0.80779121	0.80779121	1	NA	NA	1	NA	NA	0	4	NA	1	1	0.000000141	1	0.000725791	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	91626184	T	C	-	-	-	-	-	-	61	0	0	48	6	12.5	42	0	0	115	0	0	391	23	5.9	355	1	0.3	0.971784089	FALSE	FALSE	3	2.673496181	2	2	1	0	1	0.326503819	NA	2	NA	1	NA	0.673496181	0.624001996	0.624001996	1	0	NA	0	0.294528942	0.294528942	1	0.028336278	NA	0	NA	NA	1	1	0.00000016	1.70E-17	1	0.831269472	YES	1_1	0_0	somatic	custom.pulldown.HiSeq
PD9852b	4	91631192	G	A	FAM190A	CCDS47100.1	r.?	-	-	intronic	51	0	0	39	7	17.9	24	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	0.893570858	0.893570858	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	1.04E-09	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	91638794	C	T	-	-	-	-	-	-	55	0	0	49	17	34.7	29	5	17.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.673496181	2	2	1	0	1	0.326503819	NA	2	NA	1	NA	0.673496181	1.732229541	0.86611477	2	1.624613273	1.624613273	1	NA	NA	1	NA	NA	0	4	NA	1	1	4.26E-27	1	0.000000336	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	91669776	C	G	PCDH11X	CCDS14461.1	r.?	-	-	intronic	41	0	0	47	17	36.2	40	7	17.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1.44088429	3	1	2	0	1	0.55911571	1	1	NA	1	NA	0.44088429	NA	1.242709894	1.242709894	1	1.710087719	1.710087719	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.81E-27	1	1.26E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	92952578	A	T	-	-	-	-	-	-	51	0	0	42	5	11.9	41	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.357713288	3	2	2	1	1	0.642286712	1	3	NA	1	NA	0.357713288	NA	0.636617782	0.636617782	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	0.00000228	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	91721035	C	T	-	-	-	-	-	-	47	0	0	36	5	13.9	52	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.673496181	2	2	1	0	1	0.326503819	NA	2	NA	1	NA	0.673496181	0.69389022	0.69389022	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	0.00000104	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	94593284	G	A	PLXNC1	CCDS9049.1	r.?	-	-	intronic	40	0	0	33	7	21.2	24	2	8.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.357713288	3	2	2	1	1	0.642286712	1	3	NA	1	NA	0.357713288	NA	1.134142602	1.134142602	1	0.811070175	0.811070175	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.98E-10	1	0.006413403	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	91767794	G	A	-	-	-	-	-	-	47	0	0	35	12	34.3	35	9	25.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.055261477	1.027630739	2	2.768385965	1.384192982	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.83E-19	1	1.23E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	91860518	G	T	-	-	-	-	-	-	51	0	0	44	7	15.9	33	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.357713288	3	2	2	1	1	0.642286712	1	3	NA	1	NA	0.357713288	NA	0.850606952	0.850606952	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	2.55E-09	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	13424630	C	T	BTBD10	CCDS7811.1	r.?	-	-	intronic	54	0	0	43	9	20.9	44	6	13.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.043331337	1.043331337	1	1.328982456	1.328982456	1	NA	NA	1	NA	NA	1	4	NA	1	1	9.45E-13	1	9.37E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	91892640	G	A	-	-	-	-	-	-	53	0	0	42	9	21.4	33	5	15.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3.293619843	2	2	1	1	1	0.706380157	NA	3	NA	1	NA	0.293619843	1.068291417	1.068291417	1	1.529963549	1.529963549	1	NA	NA	1	NA	NA	1	4	NA	1	1	7.51E-13	1	0.00000066	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	91932169	T	C	-	-	-	-	-	-	50	1	2	40	15	37.5	32	9	28.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3.293619843	2	2	1	1	1	0.706380157	NA	3	NA	1	NA	0.293619843	1.872005988	0.936002994	2	2.828419457	1.233168376	2.293619843	NA	NA	0	NA	NA	1	4	NA	0.221687443	1	1.09E-24	1	4.94E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	91982439	T	G	ANKIB1	CCDS47639.1	r.?	-	-	intronic	51	0	0	51	15	29.4	36	2	5.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.761652695	0.880826347	2	0.60322807	0.60322807	1	NA	NA	1	NA	NA	1	4	NA	1	1	8.22E-23	1	0.014070883	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	92015185	T	A	FAM190A	CCDS47099.1	r.?	-	-	intronic	44	0	0	36	4	11.1	21	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	0.554113772	0.554113772	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	0.0000324	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	92035123	G	A	ANKIB1	CCDS47639.1	r.?	-	-	downstream	65	0	0	45	16	35.6	42	7	16.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.133157685	1.066578842	2	1.798912281	1.798912281	1	NA	NA	1	NA	NA	1	4	NA	1	1	8.61E-26	1	1.81E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	92039989	C	A	-	-	-	-	-	-	10	0	0	37	16	43.2	7	1	14.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.128496294	4	2	2	2	2	0.871503706	1	3	NA	2	NA	0.128496294	NA	2.644061297	1.242220296	2.128496294	1.540385965	1.540385965	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.78E-27	1	0.034479353	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	92060826	A	G	-	-	-	-	-	-	48	0	0	34	15	44.1	30	9	30	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	2.201479042	1.100739521	2	2.817876313	1.408938156	2	NA	NA	1	NA	NA	0	4	NA	1	1	5.18E-26	1	2.54E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	92074957	A	C	-	-	-	-	-	-	59	0	0	39	11	28.2	35	3	8.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.407748503	1.407748503	1	0.80779121	0.80779121	1	NA	NA	1	NA	NA	0	4	NA	1	1	7.20E-17	1	0.000725791	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	92113942	C	A	LRRC69	CCDS47890.1	r.?	-	-	upstream	58	0	0	35	4	11.4	25	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0.56908982	0.56908982	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	0.0000289	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	99537607	C	A	ANKS1B	ENST00000329257	r.?	-	-	intronic	47	0	0	48	12	25	47	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.357713288	3	2	2	1	1	0.642286712	1	3	NA	1	NA	0.357713288	NA	1.337432314	1.337432314	1	0	0	1	NA	NA	0	NA	NA	0	3	NA	1	1	1.44E-17	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	92210991	G	T	-	-	-	-	-	-	53	0	0	37	7	18.9	30	1	3.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3.293619843	2	2	1	1	1	0.706380157	NA	3	NA	1	NA	0.293619843	0.943491018	0.943491018	1	0.332163139	0.332163139	1	NA	NA	1	NA	NA	1	4	NA	1	1	7.05E-10	1	0.139615808	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	92247931	C	T	-	-	-	-	-	-	19	0	0	43	10	23.3	21	5	23.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	0.930139721	0.930139721	1	2.563719298	0.854573099	3	NA	NA	0	NA	NA	1	4	NA	1	1	1.61E-14	1	5.95E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	99820232	A	G	ANKS1B	ENST00000329257	r.?	-	-	intronic	50	0	0	37	7	18.9	28	1	3.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.357713288	3	2	2	1	1	0.642286712	1	3	NA	1	NA	0.357713288	NA	1.011098829	1.011098829	1	0.351789474	0.351789474	1	NA	NA	0	NA	NA	0	4	NA	1	1	7.05E-10	1	0.130947004	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	92270761	C	A	SLC26A7	CCDS6254.1	r.?	-	-	intronic	46	0	0	33	6	18.2	32	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0.908546906	0.908546906	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	1.54E-08	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	92470025	T	C	CDK6	CCDS5628.1	r.?	-	-	upstream	55	0	0	48	16	33.3	41	10	24.4	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	NA	4	NA	2	NA	2	NA	1	NA	NA	NA	NA	NA	NA	NA	NA	1	2.628350877	1.314175439	2	NA	NA	1	NA	NA	1	NA	NA	1	1	2.96E-25	1	9.51E-15	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	92490879	T	C	TRIP11	CCDS9899.1	r.?	-	-	intronic	47	0	0	42	14	33.3	26	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.149838816	3	3	3	0	0	0.850161184	1	3	NA	1	NA	0.149838816	NA	1.712237643	0.925453229	1.850161184	0	0	1	NA	NA	1	NA	NA	0	3	NA	1	1	2.83E-22	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	92492196	T	A	SLCO3A1	CCDS10371.1	r.?	-	-	intronic	46	0	0	50	14	28	31	7	22.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3.293619843	2	2	1	1	1	0.706380157	NA	3	NA	1	NA	0.293619843	1.397764471	1.397764471	1	2.274814225	0.9918009	2.293619843	NA	NA	1	NA	NA	0	4	NA	1	1	4.84E-21	1	1.85E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	92496374	A	C	-	-	-	-	-	-	58	0	0	43	17	39.5	29	6	20.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.357713288	3	2	2	1	1	0.642286712	1	3	NA	1	NA	0.357713288	NA	2.113143056	1.056571528	2	2.022789474	2.022789474	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.84E-28	1	6.72E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	92515669	C	T	FAM190A	CCDS47099.1	r.?	-	-	intronic	47	0	0	39	7	17.9	25	1	4	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	0.893570858	0.893570858	1	0.36341373	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	1.04E-09	1	0.117779757	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	101140823	A	G	-	-	-	-	-	-	52	1	1.9	37	10	27	29	7	24.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.357713288	3	2	2	1	1	0.642286712	1	3	NA	1	NA	0.357713288	NA	1.444426899	1.444426899	1	2.355035088	1.177517544	2	NA	NA	0	NA	NA	0	4	NA	0.229451111	1	3.01E-15	1	1.11E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	92564517	G	A	-	-	-	-	-	-	60	0	0	65	18	27.7	38	2	5.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5.821240459	4	4	2	1	2	0.178759541	1	4	NA	2	NA	0.821240459	NA	2.16427203	0.993350569	2.178759541	0.570912281	0.570912281	1	NA	NA	0	NA	NA	0	4	NA	1	1	1.52E-26	1	0.015598339	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	92600595	G	A	FAT3	CCDS44706.1	r.?	-	-	intronic	28	0	0	37	9	24.3	27	5	18.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.673496181	2	2	1	0	1	0.326503819	NA	2	NA	1	NA	0.673496181	1.21305988	1.21305988	1	1.747403811	1.747403811	1	NA	NA	1	NA	NA	0	4	NA	1	1	2.14E-13	1	0.00000023	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	92601695	C	T	SLCO3A1	CCDS10371.1	r.?	-	-	intronic	49	0	0	34	6	17.6	17	2	11.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3.293619843	2	2	1	1	1	0.706380157	NA	3	NA	1	NA	0.293619843	0.87859481	0.87859481	1	1.187734861	1.187734861	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.86E-08	1	0.003234386	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	92654590	C	T	KIAA1107	CCDS44172.1	r.?	-	-	downstream	40	0	0	26	7	26.9	27	1	3.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.342852295	1.342852295	1	0.435561404	0.435561404	1	NA	NA	0	NA	NA	1	4	NA	1	1	4.73E-11	1	0.126579904	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	103871130	C	A	C12orf42	CCDS44963.1	r.?	-	-	intronic	47	0	0	27	6	22.2	36	6	16.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.357713288	3	2	2	1	1	0.642286712	1	3	NA	1	NA	0.357713288	NA	1.187639895	1.187639895	1	1.631912281	1.631912281	1	NA	NA	1	NA	NA	0	4	NA	1	1	4.23E-09	1	2.68E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	92754225	G	A	GPC5	CCDS9468.1	r.?	-	-	intronic	50	0	0	43	9	20.9	35	6	17.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.252331337	1.252331337	1	1.842	1.842	1	NA	NA	1	NA	NA	1	4	NA	1	1	9.45E-13	1	2.24E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	92798102	G	A	-	-	-	-	-	-	29	0	0	38	18	47.4	24	1	4.2	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	2.366215569	1.183107784	2	0.381584417	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	1.16E-31	1	0.113346489	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	92804979	A	G	-	-	-	-	-	-	47	0	0	49	22	44.9	32	1	3.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.69041517	1.345207585	2	0.333929825	0.333929825	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.04E-37	1	0.14819814	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	92819624	G	T	HEPACAM2	CCDS43616.1	r.?	-	-	intronic	43	0	0	87	25	28.7	52	9	17.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5.821240459	4	4	2	1	2	0.178759541	1	4	NA	2	NA	0.821240459	NA	2.242404595	1.029211601	2.178759541	1.86354386	0.93177193	2	NA	NA	0	NA	NA	0	4	NA	1	1	9.55E-37	1	5.92E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	92864022	T	C	CCDC132	CCDS43617.1	r.?	-	-	intronic	44	0	0	68	20	29.4	44	10	22.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5.821240459	4	4	2	1	2	0.178759541	1	4	NA	2	NA	0.821240459	NA	2.29709739	1.054314323	2.178759541	2.44522807	1.222614035	2	NA	NA	0	NA	NA	0	4	NA	1	1	6.23E-30	1	2.08E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	92864833	T	C	GPC5	CCDS9468.1	r.?	-	-	intronic	62	0	0	46	9	19.6	20	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.17443513	1.17443513	1	0	0	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.82E-12	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	92942897	C	T	GFI1	CCDS30773.1	r.?	-	-	intronic	62	0	0	34	10	29.4	45	4	8.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.467652695	1.467652695	1	1.047701754	1.047701754	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.15E-15	1	0.0000791	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	112461740	T	C	NAA25	CCDS9159.1	r.?	-	-	downstream	48	0	0	55	28	50.9	40	8	20	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.357713288	3	2	2	1	1	0.642286712	1	3	NA	1	NA	0.357713288	NA	2.723012192	1.154937797	2.357713288	1.954385965	0.977192982	2	NA	NA	0	NA	NA	1	4	NA	1	1	1.25E-49	1	2.61E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	93037560	C	A	C15orf32	CCDS10373.1	r.?	-	-	intronic	55	0	0	39	6	15.4	25	2	8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3.293619843	2	2	1	1	1	0.706380157	NA	3	NA	1	NA	0.293619843	0.768770459	0.768770459	1	0.805243973	0.805243973	1	NA	NA	1	NA	NA	0	4	NA	1	1	4.43E-08	1	0.006948068	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	93211294	T	A	-	-	-	-	-	-	62	0	0	38	18	47.4	28	6	21.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.892215569	0.946107784	2	1.877192982	1.877192982	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.16E-31	1	5.36E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	93214551	C	T	GPC5	CCDS9468.1	r.?	-	-	intronic	49	0	0	60	8	13.3	29	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.796938124	0.796938124	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	7.93E-10	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	93226551	T	C	GPC5	CCDS9468.1	r.?	-	-	intronic	44	0	0	44	7	15.9	32	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.952730539	0.952730539	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	2.55E-09	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	93275371	A	T	GPC5	CCDS9468.1	r.?	-	-	intronic	46	0	0	40	8	20	28	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.198403194	1.198403194	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	2.61E-11	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	93326764	A	C	-	-	-	-	-	-	45	0	0	32	12	37.5	26	6	23.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1.44088429	3	1	2	0	1	0.55911571	1	1	NA	1	NA	0.44088429	NA	1.287337597	1.287337597	1	2.257315789	1.128657895	2	NA	NA	0	NA	NA	1	4	NA	1	1	5.03E-20	1	3.30E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	93327436	G	C	ENSG00000237766	ENST00000439686	r.?	-	-	upstream	49	0	0	35	14	40	24	3	12.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.996806387	0.998403194	2	1.17411513	1.17411513	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.28E-23	1	0.000233853	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	93409780	C	G	GRID2	CCDS3637.1	r.?	-	-	intronic	59	0	0	42	7	16.7	43	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	0.833666667	0.833666667	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	1.81E-09	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	93416425	G	A	MIR2277	CCDS4069.1	r.?	-	-	intronic	46	0	0	40	9	22.5	30	6	20	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.348203593	1.348203593	1	2.154385965	1.077192982	2	NA	NA	1	NA	NA	1	4	NA	1	1	4.64E-13	1	8.37E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	93493332	C	T	-	-	-	-	-	-	56	0	0	40	9	22.5	29	6	20.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.123203593	1.123203593	1	2.436789474	0.812263158	3	NA	NA	0	NA	NA	1	4	NA	1	1	4.64E-13	1	6.72E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	114323347	G	T	RBM19	CCDS9172.1	r.?	-	-	intronic	48	0	0	33	6	18.2	34	5	14.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.357713288	3	2	2	1	1	0.642286712	1	3	NA	1	NA	0.357713288	NA	0.973650725	0.973650725	1	1.436473684	1.436473684	1	NA	NA	0	NA	NA	0	4	NA	1	1	1.54E-08	1	0.000000771	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	93524760	C	T	GRID2	CCDS3637.1	r.?	-	-	intronic	60	0	0	53	19	35.8	35	5	14.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	1.787141717	0.893570858	2	1.299204085	1.299204085	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.93E-30	1	0.000000895	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	30376431	G	T	-	-	-	-	-	-	57	0	0	47	8	17	23	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.848642715	0.848642715	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	1.03E-10	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	93565567	T	C	-	-	-	-	-	-	28	0	0	31	15	48.4	35	7	20	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1.44088429	3	1	2	0	1	0.55911571	1	1	NA	1	NA	0.44088429	NA	1.661523725	1.661523725	1	1.954385965	1.954385965	1	NA	NA	0	NA	NA	1	4	NA	1	1	8.51E-27	1	4.65E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	93579244	T	G	-	-	-	-	-	-	46	0	0	58	17	29.3	36	5	13.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.755660679	0.877830339	2	1.497298246	1.497298246	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.24E-25	1	0.00000104	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	93609028	C	T	-	-	-	-	-	-	32	0	0	49	9	18.4	31	3	9.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.357713288	3	2	2	1	1	0.642286712	1	3	NA	1	NA	0.357713288	NA	0.984350183	0.984350183	1	0.947877193	0.947877193	1	NA	NA	0	NA	NA	1	4	NA	1	1	3.35E-12	1	0.000505952	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	93648103	T	C	-	-	-	-	-	-	72	0	0	47	10	21.3	34	4	11.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.276299401	1.276299401	1	1.271087719	1.271087719	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.27E-14	1	0.0000257	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	93663897	A	T	-	-	-	-	-	-	57	0	0	29	12	41.4	25	3	12	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.652694611	0.826347305	2	1.052631579	1.052631579	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.17E-20	1	0.00026475	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	93664027	G	A	-	-	-	-	-	-	38	0	0	34	7	20.6	39	4	10.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.673496181	2	2	1	0	1	0.326503819	NA	2	NA	1	NA	0.673496181	1.028355289	1.028355289	1	0.972878879	0.972878879	1	NA	NA	1	NA	NA	0	4	NA	1	1	3.73E-10	1	0.0000447	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	93667092	A	C	C5orf36	ENST00000513200	r.?	-	-	intronic	42	0	0	47	20	42.6	34	8	23.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.552598802	1.276299401	2	2.531403509	1.265701754	2	NA	NA	1	NA	NA	1	4	NA	1	1	8.18E-34	1	6.32E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	93691382	A	T	-	-	-	-	-	-	27	0	0	40	9	22.5	26	4	15.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3.293619843	2	2	1	1	1	0.706380157	NA	3	NA	1	NA	0.293619843	1.123203593	1.123203593	1	1.550094649	1.550094649	1	NA	NA	1	NA	NA	0	4	NA	1	1	4.64E-13	1	0.00000856	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	93702036	T	C	GRID2	CCDS3637.1	r.?	-	-	intronic	64	0	0	44	8	18.2	38	4	10.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	0.908546906	0.908546906	1	0.953961042	0.953961042	1	NA	NA	1	NA	NA	0	4	NA	1	1	5.90E-11	1	0.0000403	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	93702481	C	T	-	-	-	-	-	-	39	0	0	46	14	30.4	38	8	21.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.673496181	2	2	1	0	1	0.326503819	NA	2	NA	1	NA	0.673496181	1.517572854	1.517572854	1	1.992984887	0.996492444	2	NA	NA	1	NA	NA	0	4	NA	1	1	1.26E-21	1	1.67E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	93715059	C	T	GRID2	CCDS3637.1	r.?	-	-	intronic	35	0	0	37	5	13.5	26	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	0.673922156	0.673922156	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	0.00000119	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	93721419	G	T	-	-	-	-	-	-	60	0	0	46	12	26.1	39	6	15.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.302916168	1.302916168	1	1.44650984	1.44650984	1	NA	NA	1	NA	NA	0	4	NA	1	1	8.12E-18	1	4.43E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	93740415	C	T	-	-	-	-	-	-	50	0	0	38	9	23.7	32	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.420107784	1.420107784	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	2.79E-13	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	93807918	G	T	-	-	-	-	-	-	52	0	0	29	11	37.9	27	6	22.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1.44088429	3	1	2	0	1	0.55911571	1	1	NA	1	NA	0.44088429	NA	1.301069198	1.301069198	1	2.169368421	1.084684211	2	NA	NA	0	NA	NA	1	4	NA	1	1	1.56E-18	1	4.23E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	93852411	A	T	-	-	-	-	-	-	55	0	0	45	13	28.9	38	9	23.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.731692615	0.865846307	2	2.552947368	1.276473684	2	NA	NA	1	NA	NA	1	4	NA	1	1	7.68E-20	1	2.79E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	114750539	C	T	-	-	-	-	-	-	47	0	0	36	14	38.9	30	1	3.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.357713288	3	2	2	1	1	0.642286712	1	3	NA	1	NA	0.357713288	NA	2.081044681	1.04052234	2	0.322473684	0.322473684	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.09E-23	1	0.139615808	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	116576155	C	T	MED13L	CCDS9177.1	r.?	-	-	intronic	41	0	0	51	22	43.1	26	6	23.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.357713288	3	2	2	1	1	0.642286712	1	3	NA	1	NA	0.357713288	NA	2.30573331	0.977953223	2.357713288	2.257315789	1.128657895	2	NA	NA	1	NA	NA	0	4	NA	1	1	3.24E-37	1	3.30E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	93883047	C	T	-	-	-	-	-	-	56	0	0	43	13	30.2	40	7	17.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.809588822	0.904794411	2	1.885087719	1.885087719	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.88E-20	1	1.26E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	93889321	C	G	-	-	-	-	-	-	35	0	0	19	9	47.4	17	4	23.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3.293619843	2	2	1	1	1	0.706380157	NA	3	NA	1	NA	0.293619843	2.366215569	1.183107784	2	2.365404172	2.365404172	1	NA	NA	0	NA	NA	0	4	NA	1	1	1.72E-16	1	0.00000141	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	93904324	C	T	-	-	-	-	-	-	56	0	0	35	18	51.4	28	10	35.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.051896208	1.025948104	2	3.131578947	1.565789474	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.60E-32	1	1.18E-16	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	93936432	G	A	-	-	-	-	-	-	47	0	0	44	5	11.4	26	0	0	4	0	0	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	0.60946096	0.60946096	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	0.00000288	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	93996087	G	A	-	-	-	-	-	-	36	0	0	56	25	44.6	27	5	18.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.673496181	2	2	1	0	1	0.326503819	NA	2	NA	1	NA	0.673496181	2.226439122	1.113219561	2	1.747403811	1.747403811	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.43E-42	1	0.00000023	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	94013230	C	A	GPC6	CCDS9469.1	r.?	-	-	intronic	49	0	0	45	16	35.6	34	6	17.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.133157685	1.066578842	2	1.895859649	1.895859649	1	NA	NA	1	NA	NA	1	4	NA	1	1	8.61E-26	1	1.86E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	94034105	G	A	ANKRD32	CCDS4071.2	r.?	-	-	downstream	47	0	0	57	6	10.5	35	1	2.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.629161677	0.629161677	1	0.312385965	0.312385965	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.000000456	1	0.16091139	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	94040105	G	T	BCAR3	CCDS745.1	r.?	-	-	intronic	35	0	0	39	14	35.9	33	4	12.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.792133733	0.896066866	2	1.424403509	1.424403509	1	NA	NA	0	NA	NA	1	4	NA	1	1	8.19E-23	1	0.0000228	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	94117317	G	A	EPHA7	CCDS5031.1	r.?	-	-	intronic	54	0	0	31	14	45.2	30	6	20	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.804391218	0.902195609	2	1.754385965	1.754385965	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.49E-24	1	8.37E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	94152990	C	T	GPC6	CCDS9469.1	r.?	-	-	intronic	57	0	0	54	18	33.3	44	12	27.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.995341317	0.997670659	2	2.940736842	1.470368421	2	NA	NA	1	NA	NA	1	4	NA	1	1	3.12E-28	1	4.44E-18	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	94209208	C	T	MCTP1	CCDS47247.1	r.?	-	-	intronic	60	0	0	55	22	40	34	4	11.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.396806387	1.198403194	2	1.271087719	1.271087719	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.65E-36	1	0.0000257	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	94221254	G	T	-	-	-	-	-	-	52	0	0	33	25	75.8	30	6	20	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	3.025948104	1.512974052	2	1.754385965	1.754385965	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.98E-51	1	8.37E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	94242093	A	G	CRADD	CCDS9048.1	r.?	-	-	intronic	65	0	0	38	20	52.6	27	8	29.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.357713288	3	2	2	1	1	0.642286712	1	3	NA	1	NA	0.357713288	NA	2.813957589	1.193511358	2.357713288	2.892491228	1.446245614	2	NA	NA	1	NA	NA	0	4	NA	1	1	2.94E-36	1	7.97E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	94284138	C	A	-	-	-	-	-	-	19	0	0	45	9	20	31	2	6.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3.293619843	2	2	1	1	1	0.706380157	NA	3	NA	1	NA	0.293619843	0.998403194	0.998403194	1	0.654260728	0.654260728	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.47E-12	1	0.010558179	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	94342671	G	A	GPC6	CCDS9469.1	r.?	-	-	intronic	55	0	0	49	12	24.5	42	11	26.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.468043912	1.468043912	1	2.822245614	1.411122807	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.90E-17	1	1.81E-16	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	94371715	C	A	-	-	-	-	-	-	48	0	0	38	6	15.8	27	3	11.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	0.844691506	0.844691506	1	1.306684211	1.306684211	1	NA	NA	0	NA	NA	1	4	NA	1	1	3.76E-08	1	0.000334187	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	94404733	A	G	KIF11	CCDS7422.1	r.?	-	-	intronic	55	0	0	29	17	58.6	26	5	19.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.339321357	1.169660679	2	1.684210526	1.684210526	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.74E-32	1	0.000000188	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	94485840	G	A	-	-	-	-	-	-	43	0	0	35	16	45.7	28	7	25	2	0	0	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	2.443189989	1.221594994	2	2.942982456	0.980994152	3	NA	NA	0	NA	NA	1	4	NA	1	1	5.66E-28	1	8.44E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	94541930	G	C	AC011118.2	ENST00000501400	r.?	-	-	intronic	51	0	0	41	16	39	29	8	27.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.946886228	0.973443114	2	2.592446208	1.296223104	2	NA	NA	1	NA	NA	0	4	NA	1	1	1.40E-26	1	1.53E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	118620503	C	A	TAOK3	CCDS9188.1	r.?	-	-	intronic	54	0	0	43	5	11.6	35	0	0	49	0	0	117	8	6.8	104	0	0	1	TRUE	TRUE	3.357713288	3	2	2	1	1	0.642286712	1	3	NA	1	NA	0.357713288	NA	0.620568594	0.620568594	1	0	0	1	0.363781589	1.016964148	0.357713288	0	0	1	3	2	1	1	0.00000257	0.000000164	1	1	YES	1_1	0_0	somatic	custom.pulldown.HiSeq
PD9852b	9	94606338	C	T	ROR2	CCDS6691.1	r.?	-	-	intronic	31	0	0	36	9	25	24	7	29.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	0.998003992	0.998003992	1	3.145403509	1.048467836	3	NA	NA	0	NA	NA	1	4	NA	1	1	1.63E-13	1	2.51E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	94655168	C	G	GPC6	CCDS9469.1	r.?	-	-	intronic	60	0	0	52	13	25	40	8	20	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.498003992	1.498003992	1	2.154385965	1.077192982	2	NA	NA	1	NA	NA	1	4	NA	1	1	6.47E-19	1	2.61E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	94692354	T	A	-	-	-	-	-	-	50	0	0	41	21	51.2	36	9	25	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.043912176	1.021956088	2	2.192982456	1.096491228	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.17E-37	1	1.63E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	94723604	G	C	GPC6	CCDS9469.1	r.?	-	-	intronic	54	0	0	53	17	32.1	40	6	15	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.923437126	0.961718563	2	1.615789474	1.615789474	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.08E-26	1	5.18E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	94740689	A	G	-	-	-	-	-	-	48	0	0	43	27	62.8	36	8	22.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3.293619843	2	2	1	1	1	0.706380157	NA	3	NA	1	NA	0.293619843	3.134986028	1.567493014	2	2.234552026	0.974246902	2.293619843	NA	NA	1	NA	NA	0	4	NA	1	1	1.83E-51	1	1.04E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	94778032	G	A	GPC6	CCDS9469.1	r.?	-	-	intronic	52	0	0	53	5	9.4	40	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.563249501	0.563249501	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.00000734	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	94787315	C	T	-	-	-	-	-	-	24	0	0	32	8	25	28	7	25	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	0.998003992	0.998003992	1	2.692982456	0.897660819	3	NA	NA	0	NA	NA	1	4	NA	1	1	3.69E-12	1	8.44E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	94807741	C	G	GPC6	CCDS9469.1	r.?	-	-	intronic	48	0	0	53	21	39.6	40	7	17.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.372838323	1.186419162	2	1.885087719	1.885087719	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.30E-34	1	1.26E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	94821489	T	A	-	-	-	-	-	-	48	0	0	44	10	22.7	33	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.133187625	1.133187625	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	2.08E-14	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	37299958	T	A	-	-	-	-	-	-	45	0	0	59	13	22	27	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	1.098243513	1.098243513	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	3.99E-18	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	95004083	C	T	-	-	-	-	-	-	45	0	0	32	17	53.1	36	8	22.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.673496181	2	2	1	0	1	0.326503819	NA	2	NA	1	NA	0.673496181	2.650760479	1.32538024	2	2.096884573	1.048442287	2	NA	NA	1	NA	NA	0	4	NA	1	1	4.02E-31	1	1.04E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	95033890	T	A	-	-	-	-	-	-	54	0	0	41	7	17.1	26	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.682634731	0.682634731	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	1.51E-09	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	95047446	G	A	-	-	-	-	-	-	52	0	0	40	19	47.5	35	4	11.4	0	0	NA	1	0	0	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	2.539420666	1.269710333	2	1.342	1.342	1	0	NA	0	NA	NA	1	4	NA	1	1	2.27E-33	1	0.0000289	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	95070664	G	T	-	-	-	-	-	-	51	0	0	56	11	19.6	41	1	2.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.17443513	1.17443513	1	0.258526316	0.258526316	1	NA	NA	1	NA	NA	1	4	NA	1	1	5.91E-15	1	0.18577148	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	95085325	T	C	-	-	-	-	-	-	62	0	0	31	11	35.5	38	6	15.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	1.897882814	0.948941407	2	1.859964912	1.859964912	1	NA	NA	0	NA	NA	1	4	NA	1	1	3.77E-18	1	3.76E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	121697393	G	C	CAMKK2	CCDS9216.1	r.?	-	-	intronic	47	0	0	47	28	59.6	34	11	32.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.357713288	3	2	2	1	1	0.642286712	1	3	NA	1	NA	0.357713288	NA	3.188438637	1.352343668	2.357713288	3.166105263	1.583052632	2	NA	NA	1	NA	NA	0	4	NA	1	1	2.37E-52	1	1.26E-17	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	95124983	T	A	CENPP	CCDS35063.1	r.?	-	-	intronic	54	0	0	26	7	26.9	37	8	21.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	1.073852295	1.073852295	1	2.326736842	1.163368421	2	NA	NA	0	NA	NA	1	4	NA	1	1	4.73E-11	1	1.33E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	95241313	T	C	TGDS	CCDS9471.1	r.?	-	-	intronic	58	0	0	56	7	12.5	39	2	5.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.749001996	0.749001996	1	0.549368421	0.549368421	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.46E-08	1	0.016387522	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	95250765	G	A	-	-	-	-	-	-	56	0	0	49	12	24.5	37	3	8.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	1.309806449	1.309806449	1	0.953526316	0.953526316	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.90E-17	1	0.000855237	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	122104813	G	C	MORN3	CCDS31917.1	r.?	-	-	intronic	39	0	0	43	8	18.6	33	2	6.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.357713288	3	2	2	1	1	0.642286712	1	3	NA	1	NA	0.357713288	NA	0.995049642	0.995049642	1	0.596087719	0.596087719	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.85E-11	1	0.011909843	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	95273353	G	A	ELL2	CCDS4080.1	r.?	-	-	intronic	59	0	0	49	14	28.6	38	8	21.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.713716567	0.856858283	2	2.272877193	1.136438596	2	NA	NA	1	NA	NA	1	4	NA	1	1	3.50E-21	1	1.67E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	123599721	C	T	PITPNM2	CCDS9242.1	r.?	-	-	upstream	27	0	0	34	9	26.5	25	5	20	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.357713288	3	2	2	1	1	0.642286712	1	3	NA	1	NA	0.357713288	NA	1.417678253	1.417678253	1	1.954385965	1.954385965	1	NA	NA	0	NA	NA	1	4	NA	1	1	9.15E-14	1	0.000000153	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	128763700	C	T	-	-	-	-	-	-	48	0	0	35	6	17.1	27	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	6	3	4	2	2	1	1	1	NA	NA	NA	NA	NA	NA	1.366634731	1.366634731	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	2.24E-08	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	95439814	T	C	AL139381.2	ENST00000505287	r.?	-	-	intronic	59	0	0	60	16	26.7	41	7	17.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.599868263	0.799934132	2	1.842	1.842	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.86E-23	1	1.51E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	95486989	T	C	BICD2	CCDS35064.1	r.?	-	-	intronic	12	0	0	22	5	22.7	16	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	0.906187625	0.906187625	1	0	0	1	NA	NA	0	NA	NA	1	4	NA	1	1	7.67E-08	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	95500101	G	A	-	-	-	-	-	-	43	0	0	43	9	20.9	43	1	2.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.252331337	1.252331337	1	0.247754386	0.247754386	1	NA	NA	1	NA	NA	1	4	NA	1	1	9.45E-13	1	0.193893409	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	95560324	C	A	-	-	-	-	-	-	21	0	0	45	16	35.6	22	3	13.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.128496294	4	2	2	2	2	0.871503706	1	3	NA	2	NA	0.128496294	NA	2.178902365	1.023681541	2.128496294	1.464982456	1.464982456	1	NA	NA	0	NA	NA	0	4	NA	1	1	8.61E-26	1	0.000179267	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	95568311	T	G	-	-	-	-	-	-	59	0	0	58	8	13.8	31	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3.293619843	2	2	1	1	1	0.706380157	NA	3	NA	1	NA	0.293619843	0.688898204	0.688898204	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	5.99E-10	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	95610251	G	A	DICER1	CCDS9931.1	r.?	-	-	intronic	51	0	0	37	7	18.9	30	0	0	101	0	0	239	37	15.5	227	1	0.4	0.897861571	TRUE	TRUE	3.149838816	3	3	3	0	0	0.850161184	1	3	NA	1	NA	0.149838816	NA	0.971810554	0.971810554	1	0	0	1	0.796987491	0.796987491	1	0.039087719	0.039087719	1	3	2	1	1	7.05E-10	1.04E-42	1	0.679491664	YES	1_1	0_0	somatic	custom.pulldown.HiSeq
PD9852b	7	95612808	G	C	DYNC1I1	CCDS5644.1	r.?	-	-	intronic	50	0	0	49	9	18.4	28	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.102530938	1.102530938	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	3.35E-12	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	95613837	C	T	-	-	-	-	-	-	32	0	0	46	15	32.6	23	3	13	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.627397206	0.813698603	2	1.221079735	1.221079735	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.35E-23	1	0.000205387	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	95628133	G	T	DYNC1I1	CCDS5644.1	r.?	-	-	intronic	48	0	0	52	15	28.8	39	6	15.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.725700599	0.862850299	2	1.658877193	1.658877193	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.15E-22	1	4.43E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	95628551	G	C	-	-	-	-	-	-	56	0	0	46	5	10.9	34	0	0	202	1	0.5	138	14	10.1	129	0	0	1	TRUE	FALSE	3	3.293619843	2	2	1	1	1	0.706380157	NA	3	NA	1	NA	0.293619843	0.544129741	0.544129741	1	0	0	1	0.504193613	0.504193613	1	0	NA	0	3	NA	1	0.636702583	0.00000361	1.80E-14	1	1	YES	1_1	0_0	somatic	custom.pulldown.HiSeq
PD9852b	13	95649444	T	C	-	-	-	-	-	-	36	1	2.8	33	12	36.4	24	9	37.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.181093812	1.090546906	2	4.039473684	2.019736842	2	NA	NA	1	NA	NA	1	4	NA	0.165106833	1	7.86E-20	1	2.39E-15	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	95696313	T	A	ABCC4	CCDS9474.1	r.?	-	-	intronic	55	0	0	54	16	29.6	36	6	16.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.773636727	0.886818363	2	1.798912281	1.798912281	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.69E-24	1	2.68E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	95773800	A	G	FGD3	CCDS43849.1	r.?	-	-	intronic	27	0	0	27	9	33.3	29	1	3.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	1.329341317	1.329341317	1	0.366245614	0.366245614	1	NA	NA	0	NA	NA	1	4	NA	1	1	8.44E-15	1	0.135292269	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	95820792	G	C	BMPR1B	ENST00000515059	r.?	-	-	intronic	51	0	0	42	8	19	28	0	0	112	0	0	184	32	17.4	183	3	1.6	0.277192583	FALSE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	0.948483034	0.948483034	1	0	NA	0	0.868610778	0.868610778	1	0.145365492	NA	0	NA	NA	1	1	3.96E-11	7.18E-39	1	0.064892645	YES	1_1	0_0	somatic	custom.pulldown.HiSeq
PD9852b	5	95827787	A	G	-	-	-	-	-	-	54	0	0	55	6	10.9	32	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.653129741	0.653129741	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.000000367	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	95832597	C	T	AC104260.1	ENST00000508732	r.?	-	-	intronic	55	0	0	33	8	24.2	37	9	24.3	1	0	0	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3.293619843	2	2	1	1	1	0.706380157	NA	3	NA	1	NA	0.293619843	1.208067864	1.208067864	1	2.445928569	1.066405393	2.293619843	NA	NA	1	NA	NA	0	4	NA	1	1	4.85E-12	1	2.14E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	95872663	G	T	ABCC4	CCDS9474.1	r.?	-	-	intronic	47	0	0	52	16	30.8	29	4	13.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.845540918	0.922770459	2	1.486526316	1.486526316	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.33E-24	1	0.0000134	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	95958772	C	G	-	-	-	-	-	-	39	0	0	40	16	40	30	8	26.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.357713288	3	2	2	1	1	0.642286712	1	3	NA	1	NA	0.357713288	NA	2.139891703	1.069945851	2	2.609105263	1.304552632	2	NA	NA	1	NA	NA	1	4	NA	1	1	8.56E-27	1	2.07E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	95986651	G	T	-	-	-	-	-	-	44	0	0	38	12	31.6	34	4	11.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	1.689383012	1.026439445	1.645867197	1.389087719	1.389087719	1	NA	NA	0	NA	NA	1	4	NA	1	1	5.86E-19	1	0.0000257	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	96013867	G	A	-	-	-	-	-	-	46	0	0	41	9	22	32	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.357713288	3	2	2	1	1	0.642286712	1	3	NA	1	NA	0.357713288	NA	1.176940436	1.176940436	1	0	0	1	NA	NA	1	NA	NA	0	3	NA	1	1	5.92E-13	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	129028877	G	A	TMEM132C	CCDS45009.1	r.?	-	-	intronic	17	0	0	45	6	13.3	18	2	11.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	3	4	2	2	1	1	1	NA	NA	NA	NA	NA	NA	1.062938124	1.062938124	1	1.084684211	1.084684211	1	NA	NA	1	NA	NA	0	4	NA	1	1	0.000000108	1	0.003626632	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	89372529	G	A	-	-	-	-	-	-	55	0	0	58	25	43.1	38	14	36.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.673496181	2	2	1	0	1	0.326503819	NA	2	NA	1	NA	0.673496181	2.151558882	1.075779441	2	3.47591677	1.737958385	2	NA	NA	1	NA	NA	0	4	NA	1	1	4.44E-42	1	5.28E-23	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	96057031	G	A	WNK2	ENST00000349097	r.?	-	-	intronic	16	0	0	33	8	24.2	16	3	18.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	0.966067864	0.966067864	1	2.025122807	2.025122807	1	NA	NA	0	NA	NA	1	4	NA	1	1	4.85E-12	1	0.0000667	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	96071975	C	A	NTN4	CCDS9054.1	r.?	-	-	intronic	39	0	0	37	6	16.2	26	1	3.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.357713288	3	2	2	1	1	0.642286712	1	3	NA	1	NA	0.357713288	NA	0.86665614	0.86665614	1	0.371333333	0.371333333	1	NA	NA	1	NA	NA	0	4	NA	1	1	3.18E-08	1	0.122190858	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	96077165	C	T	-	-	-	-	-	-	39	0	0	33	6	18.2	34	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	0.908546906	0.908546906	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	1.54E-08	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	96086574	T	G	CLDN10	CCDS9475.1	r.?	-	-	intronic	41	0	0	42	5	11.9	39	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.7130499	0.7130499	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.00000228	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	96107215	T	C	-	-	-	-	-	-	50	0	0	40	8	20	28	4	14.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	0.998403194	0.998403194	1	1.683385965	1.683385965	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.61E-11	1	0.0000116	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	96151422	C	G	-	-	-	-	-	-	54	0	0	36	10	27.8	27	5	18.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.109780439	1.109780439	1	1.622807018	1.622807018	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.21E-15	1	0.00000023	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	96153065	G	C	-	-	-	-	-	-	62	0	0	25	11	44	19	6	31.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.756487026	0.878243513	2	2.771929825	1.385964912	2	NA	NA	1	NA	NA	1	4	NA	1	1	2.04E-19	1	4.01E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	30871454	C	A	KATNAL1	CCDS31956.1	r.?	-	-	intronic	41	0	0	28	8	28.6	28	7	25	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.141716567	1.141716567	1	2.192982456	1.096491228	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.11E-12	1	8.44E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	96242249	A	G	UNC5C	CCDS3643.1	r.?	-	-	intronic	41	0	0	41	5	12.2	26	0	0	81	1	1.2	158	8	5.1	112	0	0	1	FALSE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	0.609025948	0.609025948	1	0	NA	0	0.254592814	0.254592814	1	0	NA	0	NA	NA	1	0.333700419	0.00000202	0.00000162	1	1	YES	1_1	0_0	somatic	custom.pulldown.HiSeq
PD9852b	1	96252868	T	C	-	-	-	-	-	-	46	0	0	47	9	19.1	40	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	0.95347505	0.95347505	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	2.24E-12	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	96252869	C	A	-	-	-	-	-	-	46	1	2.2	45	9	20	39	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	0.998403194	0.998403194	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	0.205924651	1	1.47E-12	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	96281890	C	A	-	-	-	-	-	-	64	0	0	54	17	31.5	32	2	6.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	1.684036863	1.023191219	1.645867197	0.729859649	0.729859649	1	NA	NA	0	NA	NA	1	4	NA	1	1	3.02E-26	1	0.011224977	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	96285983	C	A	DIAPH2	CCDS14467.1	r.?	-	-	intronic	46	0	0	31	13	41.9	25	1	4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1	3	1	2	0	1	1	1	NA	NA	NA	NA	NA	NA	1.253654691	1.253654691	1	0.390877193	0.390877193	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.32E-22	1	0.117779757	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	96328461	T	C	-	-	-	-	-	-	54	0	0	44	12	27.3	28	7	25	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	1.459498615	1.459498615	1	2.942982456	0.980994152	3	NA	NA	0	NA	NA	1	4	NA	1	1	4.44E-18	1	8.44E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	96391632	G	C	HAL	CCDS9058.1	r.?	-	-	upstream	48	0	0	42	10	23.8	36	5	13.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.357713288	3	2	2	1	1	0.642286712	1	3	NA	1	NA	0.357713288	NA	1.273235563	1.273235563	1	1.358298246	1.358298246	1	NA	NA	0	NA	NA	0	4	NA	1	1	1.24E-14	1	0.00000104	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	96421980	G	A	-	-	-	-	-	-	40	0	0	41	13	31.7	21	3	14.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.899469062	0.949734531	2	1.540385965	1.540385965	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.89E-20	1	0.000155401	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	96429537	A	T	-	-	-	-	-	-	18	0	0	35	10	28.6	19	6	31.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.128496294	4	2	2	2	2	0.871503706	1	3	NA	2	NA	0.128496294	NA	1.750466507	0.875233253	2	3.403929825	1.701964912	2	NA	NA	0	NA	NA	0	4	NA	1	1	1.60E-15	1	4.01E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	96429846	T	G	-	-	-	-	-	-	49	0	0	46	15	32.6	27	5	18.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	1.742844499	1.058921706	1.645867197	2.177807018	2.177807018	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.35E-23	1	0.00000023	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	96506752	G	A	-	-	-	-	-	-	22	0	0	58	6	10.3	16	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.673496181	2	2	1	0	1	0.326503819	NA	2	NA	1	NA	0.673496181	0.514177645	0.514177645	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	0.000000506	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	96516759	G	A	-	-	-	-	-	-	60	0	0	33	9	27.3	21	3	14.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.089820359	1.089820359	1	1.254385965	1.254385965	1	NA	NA	1	NA	NA	1	4	NA	1	1	6.76E-14	1	0.000155401	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	96521462	A	G	RIOK2	CCDS4089.1	r.?	-	-	upstream	63	0	0	57	18	31.6	41	12	29.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.893477046	0.946738523	2	3.156175439	1.578087719	2	NA	NA	1	NA	NA	1	4	NA	1	1	9.84E-28	1	1.69E-18	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	96521483	G	T	RIOK2	CCDS4089.1	r.?	-	-	upstream	55	0	0	62	22	35.5	36	11	30.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.127165669	1.063582834	2	3.296210526	1.648105263	2	NA	NA	1	NA	NA	1	4	NA	1	1	6.75E-35	1	2.62E-17	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	96536631	C	T	-	-	-	-	-	-	51	0	0	49	8	16.3	29	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	0.813698603	0.813698603	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	1.47E-10	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	96570456	A	C	-	-	-	-	-	-	54	0	0	51	5	9.8	28	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	0.489217565	0.489217565	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	0.00000606	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	96577928	G	T	-	-	-	-	-	-	33	0	0	49	11	22.4	29	2	6.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.673496181	2	2	1	0	1	0.326503819	NA	2	NA	1	NA	0.673496181	1.118211577	1.118211577	1	0.651734394	0.651734394	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.19E-15	1	0.009279585	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	96615992	G	C	-	-	-	-	-	-	56	0	0	50	4	8	34	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.673496181	2	2	1	0	1	0.326503819	NA	2	NA	1	NA	0.673496181	0.399361277	0.399361277	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	0.000119787	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	34615518	C	A	-	-	-	-	-	-	44	0	0	40	6	15	25	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.598802395	0.598802395	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	5.18E-08	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	38260893	T	C	TRPC4	CCDS45037.1	r.?	-	-	intronic	56	0	0	33	10	30.3	24	1	4.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.209580838	1.209580838	1	0.368421053	0.368421053	1	NA	NA	1	NA	NA	1	4	NA	1	1	8.14E-16	1	0.113346489	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	96674093	A	C	UGGT2	CCDS9480.1	r.?	-	-	intronic	46	0	0	53	27	50.9	26	3	11.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	3.049936128	1.524968064	2	1.23877193	1.23877193	1	NA	NA	1	NA	NA	1	4	NA	1	1	6.40E-48	1	0.000298167	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	96691420	G	T	-	-	-	-	-	-	47	0	0	38	9	23.7	30	1	3.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	0.946107784	0.946107784	1	0.355473684	0.355473684	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.79E-13	1	0.139615808	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	96701912	A	T	-	-	-	-	-	-	43	0	0	30	7	23.3	23	2	8.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.163139721	1.163139721	1	1.024157895	1.024157895	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.44E-10	1	0.00589844	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	41940918	A	G	NAA16	CCDS9379.1	r.?	-	-	intronic	63	0	0	41	20	48.8	29	7	24.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.948103792	0.974051896	2	2.114035088	1.057017544	2	NA	NA	1	NA	NA	1	4	NA	1	1	2.32E-35	1	1.11E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	96725078	G	C	-	-	-	-	-	-	28	0	0	23	6	26.1	28	1	3.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	1.041916168	1.041916168	1	0.387789474	0.387789474	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.47E-09	1	0.130947004	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	96743757	A	C	-	-	-	-	-	-	56	0	0	32	10	31.2	38	8	21.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	1.245508982	1.245508982	1	2.272877193	1.136438596	2	NA	NA	0	NA	NA	1	4	NA	1	1	5.70E-16	1	1.67E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	96754017	A	G	-	-	-	-	-	-	64	0	0	66	14	21.2	47	9	19.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.270307385	1.270307385	1	2.057438596	1.028719298	2	NA	NA	1	NA	NA	1	4	NA	1	1	3.71E-19	1	2.24E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	96770831	C	A	-	-	-	-	-	-	45	0	0	40	13	32.5	32	3	9.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	1.62240519	0.811202595	2	0.854022266	0.854022266	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.30E-20	1	0.000556213	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	96796012	G	A	CYP2C8	CCDS7438.1	r.?	-	-	downstream	43	0	0	39	21	53.8	23	4	17.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.147704591	1.073852295	2	1.526315789	1.526315789	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.73E-38	1	0.00000513	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	96796013	C	A	CYP2C8	CCDS7438.1	r.?	-	-	downstream	44	0	0	37	19	51.4	22	4	18.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.051896208	1.025948104	2	1.596491228	1.596491228	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.09E-34	1	0.00000425	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	96817768	G	A	-	-	-	-	-	-	51	0	0	39	14	35.9	28	2	7.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	1.792133733	0.896066866	2	0.645059371	0.645059371	1	NA	NA	1	NA	NA	0	4	NA	1	1	8.19E-23	1	0.008668191	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	96831876	G	A	-	-	-	-	-	-	40	0	0	49	11	22.4	25	3	12	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.118211577	1.118211577	1	1.127150525	1.127150525	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.19E-15	1	0.00026475	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	96857652	G	A	DIAPH2	CCDS14467.1	r.6989g>a	c.?	p.?	3'UTR variant	47	0	0	38	9	23.7	34	2	5.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1	3	1	2	0	1	1	1	NA	NA	NA	NA	NA	NA	0.709107784	0.709107784	1	0.57654386	0.57654386	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.79E-13	1	0.012612579	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	96887719	A	G	-	-	-	-	-	-	62	0	0	53	14	26.4	32	6	18.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.673496181	2	2	1	0	1	0.326503819	NA	2	NA	1	NA	0.673496181	1.317892216	1.317892216	1	1.775740089	1.775740089	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.22E-20	1	1.27E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	96890609	G	A	-	-	-	-	-	-	15	0	0	36	9	25	25	2	8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3.293619843	2	2	1	1	1	0.706380157	NA	3	NA	1	NA	0.293619843	1.248003992	1.248003992	1	0.805243973	0.805243973	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.63E-13	1	0.006948068	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	96921594	G	T	AK7	CCDS9945.1	r.?	-	-	intronic	38	0	0	40	18	45	25	6	24	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.149838816	3	3	3	0	0	0.850161184	1	3	NA	1	NA	0.149838816	NA	2.313834653	1.156917326	2	2.345263158	1.172631579	2	NA	NA	0	NA	NA	1	4	NA	1	1	3.90E-31	1	2.55E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	96929244	C	T	-	-	-	-	-	-	41	0	0	39	12	30.8	31	2	6.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	1.537540918	1.537540918	1	0.590547311	0.590547311	1	NA	NA	1	NA	NA	0	4	NA	1	1	8.43E-19	1	0.010558179	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	43765038	A	T	-	-	-	-	-	-	65	0	0	43	9	20.9	37	4	10.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.252331337	1.252331337	1	1.163368421	1.163368421	1	NA	NA	1	NA	NA	1	4	NA	1	1	9.45E-13	1	0.0000362	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	96970709	T	C	-	-	-	-	-	-	34	0	0	42	7	16.7	31	1	3.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.000666667	1.000666667	1	0.344701754	0.344701754	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.81E-09	1	0.143917729	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	97001583	C	A	-	-	-	-	-	-	38	0	0	57	12	21.1	41	10	24.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.264315369	1.264315369	1	2.628350877	1.314175439	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.40E-16	1	9.51E-15	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	97021888	C	G	-	-	-	-	-	-	57	0	0	44	8	18.2	36	3	8.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0.908546906	0.908546906	1	0.779612447	0.779612447	1	NA	NA	1	NA	NA	0	4	NA	1	1	5.90E-11	1	0.000788827	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	97043274	C	T	-	-	-	-	-	-	26	0	0	25	13	52	29	10	34.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.149838816	3	3	3	0	0	0.850161184	1	3	NA	1	NA	0.149838816	NA	2.673764487	0.938109922	2.850161184	3.371315789	1.12377193	3	NA	NA	1	NA	NA	1	4	NA	1	1	6.00E-24	1	1.79E-16	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	97043586	A	C	-	-	-	-	-	-	52	0	0	47	11	23.4	26	4	15.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.168131737	1.168131737	1	1.812877193	1.812877193	1	NA	NA	0	NA	NA	1	4	NA	1	1	7.21E-16	1	0.00000856	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	97044188	T	C	-	-	-	-	-	-	52	0	0	36	13	36.1	26	3	11.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3.293619843	2	2	1	1	1	0.706380157	NA	3	NA	1	NA	0.293619843	1.802117764	0.901058882	2	1.157538212	1.157538212	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.53E-21	1	0.000298167	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	97118988	C	G	-	-	-	-	-	-	59	0	0	52	11	21.2	27	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.673496181	2	2	1	0	1	0.326503819	NA	2	NA	1	NA	0.673496181	1.058307385	1.058307385	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	2.44E-15	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	97134062	C	A	-	-	-	-	-	-	39	0	0	45	15	33.3	28	6	21.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1	3	1	2	0	1	1	1	NA	NA	NA	NA	NA	NA	0.996341317	0.996341317	1	2.091192982	2.091192982	1	NA	NA	0	NA	NA	1	4	NA	1	1	9.14E-24	1	5.36E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	97134379	C	G	-	-	-	-	-	-	47	0	0	38	12	31.6	22	8	36.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1	3	1	2	0	1	1	1	NA	NA	NA	NA	NA	NA	0.945477046	0.945477046	1	3.556982456	1.778491228	2	NA	NA	0	NA	NA	1	4	NA	1	1	5.86E-19	1	1.17E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	97134719	C	T	-	-	-	-	-	-	40	0	0	40	10	25	27	4	14.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1	3	1	2	0	1	1	1	NA	NA	NA	NA	NA	NA	0.748003992	0.748003992	1	1.446245614	1.446245614	1	NA	NA	0	NA	NA	1	4	NA	1	1	7.22E-15	1	0.00001	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	97135156	C	G	-	-	-	-	-	-	51	0	0	38	11	28.9	18	3	16.7	2	0	0	0	0	NA	0	0	NA	1	TRUE	FALSE	1	3	1	2	0	1	1	1	NA	NA	NA	NA	NA	NA	0.864692615	0.864692615	1	1.631912281	1.631912281	1	NA	NA	0	NA	NA	1	4	NA	1	1	5.19E-17	1	0.0000964	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	97135845	C	G	-	-	-	-	-	-	51	0	0	27	8	29.6	37	2	5.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1	3	1	2	0	1	1	1	NA	NA	NA	NA	NA	NA	0.885636727	0.885636727	1	0.527684211	0.527684211	1	NA	NA	0	NA	NA	1	4	NA	1	1	7.97E-13	1	0.014826063	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	97136306	C	G	-	-	-	-	-	-	45	0	0	46	17	37	31	6	19.4	126	0	0	197	37	18.8	187	29	15.5	1.89E-25	TRUE	TRUE	1	3	1	2	0	1	1	1	NA	NA	NA	NA	NA	NA	1.107045908	1.107045908	1	1.895754386	1.895754386	1	0.562499002	0.562499002	1	1.514649123	0.757324561	2	4	3	1	1	1.16E-27	5.14E-46	1.03E-08	7.58E-34	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	X	97136354	C	T	-	-	-	-	-	-	49	0	0	52	15	28.8	25	6	24	121	0	0	187	21	11.2	146	21	14.4	3.69E-18	TRUE	TRUE	1	3	1	2	0	1	1	1	NA	NA	NA	NA	NA	NA	0.861700599	0.861700599	1	2.345263158	1.172631579	2	0.335105788	0.335105788	1	1.407157895	1.407157895	1	4	1	1	1	1.15E-22	6.72E-22	2.55E-09	3.20E-24	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	X	97136370	C	T	-	-	-	-	-	-	45	0	0	50	12	24	26	4	15.4	107	0	0	169	18	10.7	130	16	12.3	4.14E-13	TRUE	TRUE	1	3	1	2	0	1	1	1	NA	NA	NA	NA	NA	NA	0.718083832	0.718083832	1	1.504877193	1.504877193	1	0.320145709	0.320145709	1	1.201947368	1.201947368	1	4	1	1	1	2.49E-17	1.44E-18	0.00000856	1.08E-17	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	X	97136372	C	T	-	-	-	-	-	-	45	0	0	51	11	21.6	25	4	16	106	0	0	166	18	10.8	129	15	11.6	5.12E-12	TRUE	TRUE	1	3	1	2	0	1	1	1	NA	NA	NA	NA	NA	NA	0.646275449	0.646275449	1	1.563508772	1.563508772	1	0.323137725	0.323137725	1	1.13354386	1.13354386	1	4	1	1	1	1.94E-15	1.04E-18	0.00000727	2.67E-16	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	4	97156645	A	T	-	-	-	-	-	-	47	0	0	38	4	10.5	40	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	0.524161677	0.524161677	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	0.0000403	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	109014616	C	A	-	-	-	-	-	-	46	0	0	69	21	30.4	32	8	25	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5	5.491323809	4	4	1	1	1	0.508676191	NA	5	NA	1	NA	0.491323809	2.125572854	1.062786427	2	3.065813408	1.021937803	3	NA	NA	1	NA	NA	0	4	NA	1	1	1.02E-31	1	3.69E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	97164062	C	T	EPHA6	CCDS46876.1	r.?	-	-	intronic	42	0	0	50	12	24	35	2	5.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	1.283075705	1.283075705	1	0.671	0.671	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.49E-17	1	0.013332991	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	97182460	G	T	-	-	-	-	-	-	58	0	0	44	10	22.7	32	2	6.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3.293619843	2	2	1	1	1	0.706380157	NA	3	NA	1	NA	0.293619843	1.133187625	1.133187625	1	0.624064079	0.624064079	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.08E-14	1	0.011224977	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	61759192	G	A	-	-	-	-	-	-	63	0	0	46	20	43.5	42	6	14.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.606526946	1.303263473	2	1.540385965	1.540385965	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.72E-34	1	7.02E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	97204439	T	A	HS6ST3	CCDS9481.1	r.?	-	-	intronic	44	0	0	52	19	36.5	36	10	27.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.187085828	1.093542914	2	2.994596491	1.497298246	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.24E-30	1	2.21E-15	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	63011121	A	T	-	-	-	-	-	-	55	0	0	67	14	20.9	35	6	17.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.252331337	1.252331337	1	1.842	1.842	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.66E-19	1	2.24E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	97240073	G	A	-	-	-	-	-	-	40	0	0	27	6	22.2	25	5	20	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.673496181	2	2	1	0	1	0.326503819	NA	2	NA	1	NA	0.673496181	1.108227545	1.108227545	1	1.889085201	1.889085201	1	NA	NA	1	NA	NA	0	4	NA	1	1	4.23E-09	1	0.000000153	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	97251531	G	A	-	-	-	-	-	-	58	0	0	44	21	47.7	40	8	20	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.673496181	2	2	1	0	1	0.326503819	NA	2	NA	1	NA	0.673496181	2.381191617	1.190595808	2	1.889085201	0.944542601	2	NA	NA	1	NA	NA	0	4	NA	1	1	8.60E-37	1	2.61E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	65833804	G	T	-	-	-	-	-	-	60	0	0	46	12	26.1	28	4	14.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.563916168	1.563916168	1	1.540385965	1.540385965	1	NA	NA	1	NA	NA	1	4	NA	1	1	8.12E-18	1	0.0000116	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	97355162	C	T	FBP2	CCDS6711.1	r.?	-	-	intronic	42	0	0	35	7	20	27	6	22.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	0.798403194	0.798403194	1	2.391368421	1.195684211	2	NA	NA	0	NA	NA	1	4	NA	1	1	4.65E-10	1	4.23E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	97388514	A	T	-	-	-	-	-	-	45	0	0	47	20	42.6	28	8	28.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.552598802	1.276299401	2	3.08077193	1.540385965	2	NA	NA	1	NA	NA	1	4	NA	1	1	8.18E-34	1	1.11E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	97389643	G	A	LMAN2L	CCDS2023.1	r.?	-	-	intronic	29	0	0	56	21	37.5	25	7	28	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.128496294	4	2	2	2	2	0.871503706	1	3	NA	2	NA	0.128496294	NA	2.295192098	1.07831623	2.128496294	3.016140351	1.508070175	2	NA	NA	1	NA	NA	1	4	NA	1	1	5.43E-34	1	3.47E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	97401240	C	T	LMAN2L	CCDS2023.1	r.?	-	-	intronic	34	0	0	33	9	27.3	36	8	22.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.128496294	4	2	2	2	2	0.871503706	1	3	NA	2	NA	0.128496294	NA	1.670899847	1.670899847	1	2.391368421	1.195684211	2	NA	NA	1	NA	NA	1	4	NA	1	1	6.76E-14	1	1.04E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	97432890	C	T	-	-	-	-	-	-	29	0	0	41	15	36.6	30	1	3.3	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.673496181	2	2	1	0	1	0.326503819	NA	2	NA	1	NA	0.673496181	1.827077844	0.913538922	2	0.311699058	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	1.71E-24	1	0.139615808	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	116080616	G	A	-	-	-	-	-	-	30	0	0	64	8	12.5	34	1	2.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5	5.491323809	4	4	1	1	1	0.508676191	NA	5	NA	1	NA	0.491323809	0.874001996	0.874001996	1	0.355634355	0.355634355	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.35E-09	1	0.156694864	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	97498384	C	A	-	-	-	-	-	-	59	0	0	50	19	38	33	10	30.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3.293619843	2	2	1	1	1	0.706380157	NA	3	NA	1	NA	0.293619843	1.896966068	0.948483034	2	3.049861549	1.329715366	2.293619843	NA	NA	1	NA	NA	0	4	NA	1	1	5.00E-31	1	8.14E-16	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	97548293	T	A	-	-	-	-	-	-	37	0	0	48	10	20.8	30	6	20	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	1.038339321	1.038339321	1	1.817068651	1.817068651	1	NA	NA	1	NA	NA	0	4	NA	1	1	5.37E-14	1	8.37E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	97630496	C	G	ENTPD1	CCDS7444.1	r.?	-	-	downstream	52	0	0	34	15	44.1	33	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.760479042	0.880239521	2	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	5.18E-26	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	97650447	G	T	-	-	-	-	-	-	43	0	0	40	16	40	28	8	28.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3.293619843	2	2	1	1	1	0.706380157	NA	3	NA	1	NA	0.293619843	1.996806387	0.998403194	2	2.878747205	1.255110874	2.293619843	NA	NA	0	NA	NA	1	4	NA	1	1	8.56E-27	1	1.11E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	97661216	C	G	-	-	-	-	-	-	40	0	0	54	7	13	28	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.673496181	2	2	1	0	1	0.326503819	NA	2	NA	1	NA	0.673496181	0.648962076	0.648962076	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	1.13E-08	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	97680709	C	T	MINA	CCDS43114.1	r.?	-	-	intronic	66	0	0	38	11	28.9	39	9	23.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	1.545036995	1.545036995	1	2.719315789	0.906438596	3	NA	NA	0	NA	NA	1	4	NA	1	1	5.19E-17	1	3.62E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	97698588	T	A	-	-	-	-	-	-	55	0	0	45	6	13.3	32	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.357713288	3	2	2	1	1	0.642286712	1	3	NA	1	NA	0.357713288	NA	0.711513991	0.711513991	1	0	0	1	NA	NA	0	NA	NA	0	3	NA	1	1	0.000000108	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	97698975	C	T	-	-	-	-	-	-	50	0	0	53	8	15.1	40	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.357713288	3	2	2	1	1	0.642286712	1	3	NA	1	NA	0.357713288	NA	0.807809118	0.807809118	1	0	0	1	NA	NA	1	NA	NA	0	3	NA	1	1	2.83E-10	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	97708088	A	T	-	-	-	-	-	-	40	0	0	43	12	27.9	32	7	21.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.671772455	0.835886228	2	2.359052632	1.179526316	2	NA	NA	1	NA	NA	1	4	NA	1	1	3.24E-18	1	2.36E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	97751973	G	T	-	-	-	-	-	-	58	0	0	35	13	37.1	33	7	21.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.357713288	3	2	2	1	1	0.642286712	1	3	NA	1	NA	0.357713288	NA	1.984749554	0.992374777	2	2.071649123	1.035824561	2	NA	NA	0	NA	NA	0	4	NA	1	1	1.63E-21	1	2.98E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	97766868	C	A	MIR24-1	CCDS6713.1	r.?	-	-	intronic	17	0	0	11	3	27.3	1	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	1.089820359	1.089820359	1	0	0	1	NA	NA	0	NA	NA	1	4	NA	1	1	0.00002	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	97795469	G	C	-	-	-	-	-	-	52	0	0	30	12	40	34	9	26.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.673496181	2	2	1	0	1	0.326503819	NA	2	NA	1	NA	0.673496181	1.996806387	0.998403194	2	2.503037892	1.251518946	2	NA	NA	1	NA	NA	0	4	NA	1	1	1.94E-20	1	9.15E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	73159544	G	T	-	-	-	-	-	-	51	0	0	53	13	24.5	28	3	10.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.468043912	1.468043912	1	1.152596491	1.152596491	1	NA	NA	1	NA	NA	1	4	NA	1	1	8.53E-19	1	0.000372895	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	97861122	G	T	-	-	-	-	-	-	60	0	0	35	10	28.6	28	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.141716567	1.141716567	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	1.60E-15	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	73802419	G	A	-	-	-	-	-	-	43	0	0	56	12	21.4	35	5	14.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.282291417	1.282291417	1	1.540385965	1.540385965	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.11E-16	1	0.000000895	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	74420741	G	T	KLF12	CCDS9449.1	r.?	-	-	intronic	36	0	0	56	18	32.1	37	5	13.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.923437126	0.961718563	2	1.454210526	1.454210526	1	NA	NA	1	NA	NA	1	4	NA	1	1	6.76E-28	1	0.00000119	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	97952713	G	A	-	-	-	-	-	-	32	0	0	46	6	13	31	2	6.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.128496294	4	2	2	2	2	0.871503706	1	3	NA	2	NA	0.128496294	NA	0.795666594	0.795666594	1	0.700175439	0.700175439	1	NA	NA	0	NA	NA	0	4	NA	1	1	0.000000123	1	0.010558179	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	97954618	A	G	MIR135A2	ENST00000384854	r.?	-	-	upstream	48	0	0	53	9	17	35	3	8.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.357713288	3	2	2	1	1	0.642286712	1	3	NA	1	NA	0.357713288	NA	0.909453974	0.909453974	1	0.840385965	0.840385965	1	NA	NA	0	NA	NA	1	4	NA	1	1	7.10E-12	1	0.000725791	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	97957207	C	T	ENSG00000104324	CCDS6273.1	r.?	-	-	intronic	51	0	0	45	18	40	29	11	37.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.996806387	0.998403194	2	3.559917075	1.779958537	2	NA	NA	1	NA	NA	0	4	NA	1	1	5.76E-30	1	1.56E-18	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	97964421	C	T	BAIAP2L1	CCDS34687.1	r.?	-	-	intronic	22	0	0	34	11	32.4	27	6	22.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.941413174	0.970706587	2	2.391368421	1.195684211	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.26E-17	1	4.23E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	98093985	C	A	ENSG00000104324	CCDS6273.1	r.?	-	-	intronic	47	0	0	27	6	22.2	41	2	4.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.108227545	1.108227545	1	0.460253131	0.460253131	1	NA	NA	1	NA	NA	0	4	NA	1	1	4.23E-09	1	0.018015855	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	98160841	C	T	-	-	-	-	-	-	45	0	0	35	5	14.3	33	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	0.570858283	0.570858283	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	0.000000895	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	98179725	T	A	DPYD	CCDS30777.1	r.?	-	-	intronic	48	0	0	32	15	46.9	36	6	16.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	2.341255489	1.170627745	2	1.965912281	1.965912281	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.59E-26	1	2.68E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	98198581	T	C	-	-	-	-	-	-	39	0	0	44	12	27.3	25	8	32	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	1.089820359	1.089820359	1	3.447017544	1.149005848	3	NA	NA	0	NA	NA	1	4	NA	1	1	4.44E-18	1	3.92E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	98284247	C	T	-	-	-	-	-	-	57	0	0	39	11	28.2	25	4	16	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	1.407748503	1.407748503	1	1.45365492	1.45365492	1	NA	NA	1	NA	NA	0	4	NA	1	1	7.20E-17	1	0.00000727	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	74423242	G	T	KLF12	CCDS9449.1	r.?	-	-	intronic	41	0	0	45	17	37.8	37	7	18.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.264982036	1.132491018	2	2.035894737	1.017947368	2	NA	NA	1	NA	NA	1	4	NA	1	1	7.37E-28	1	7.05E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	77159996	G	T	-	-	-	-	-	-	46	0	0	50	22	44	30	8	26.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.636487026	1.318243513	2	2.876105263	1.438052632	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.85E-37	1	2.07E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	98312649	C	G	-	-	-	-	-	-	35	0	0	19	6	31.6	19	4	21.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1	3	1	2	0	1	1	1	NA	NA	NA	NA	NA	NA	0.945477046	0.945477046	1	2.061877193	2.061877193	1	NA	NA	0	NA	NA	1	4	NA	1	1	4.01E-10	1	0.00000228	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	98403955	G	T	AC027708.1	ENST00000503768	r.?	-	-	intronic	45	0	0	46	19	41.3	32	2	6.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3.293619843	2	2	1	1	1	0.706380157	NA	3	NA	1	NA	0.293619843	2.061702595	1.030851297	2	0.624064079	0.624064079	1	NA	NA	0	NA	NA	0	4	NA	1	1	6.97E-32	1	0.011224977	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	98469724	C	T	-	-	-	-	-	-	47	0	0	41	19	46.3	15	5	33.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.848303393	0.924151697	2	2.921052632	1.460526316	2	NA	NA	1	NA	NA	1	4	NA	1	1	4.20E-33	1	0.000000009	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	98530022	A	G	-	-	-	-	-	-	57	0	0	31	9	29	30	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.157684631	1.157684631	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	3.57E-14	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	98563019	C	A	DCBLD2	CCDS46878.1	r.?	-	-	intronic	44	0	0	38	16	42.1	25	3	12	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	2.250728633	1.125364316	2	1.412631579	1.412631579	1	NA	NA	0	NA	NA	1	4	NA	1	1	3.06E-27	1	0.00026475	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	98569911	A	G	-	-	-	-	-	-	50	0	0	27	5	18.5	23	2	8.7	0	0	NA	1	1	100	0	0	NA	1	TRUE	FALSE	3	2.673496181	2	2	1	0	1	0.326503819	NA	2	NA	1	NA	0.673496181	0.923522954	0.923522954	1	0.821752063	0.821752063	1	4.992015968	4.992015968	1	NA	NA	0	4	NA	1	1	0.00000023	0.005	0.00589844	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	98616994	A	T	C4orf37	CCDS3645.1	r.?	-	-	intronic	54	0	0	41	8	19.5	31	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	0.973443114	0.973443114	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	3.22E-11	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	98626478	C	T	-	-	-	-	-	-	33	0	0	43	8	18.6	27	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3.293619843	2	2	1	1	1	0.706380157	NA	3	NA	1	NA	0.293619843	0.92851497	0.92851497	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	4.85E-11	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	78202070	T	A	SCEL	CCDS9458.1	r.?	-	-	intronic	57	0	0	43	14	32.6	34	4	11.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.953397206	0.976698603	2	1.271087719	1.271087719	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.18E-22	1	0.0000257	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	98672783	C	T	-	-	-	-	-	-	38	0	0	32	12	37.5	33	3	9.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.497005988	1.497005988	1	0.798245614	0.798245614	1	NA	NA	1	NA	NA	1	4	NA	1	1	5.03E-20	1	0.000609557	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	98808251	G	A	SLIT1	CCDS7453.1	r.?	-	-	intronic	16	0	0	29	16	55.2	11	1	9.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.203592814	1.101796407	2	0.798245614	0.798245614	1	NA	NA	1	NA	NA	1	4	NA	1	1	9.74E-30	1	0.05364542	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	98895399	A	T	-	-	-	-	-	-	41	0	0	41	12	29.3	30	2	6.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3.293619843	2	2	1	1	1	0.706380157	NA	3	NA	1	NA	0.293619843	1.462660679	1.462660679	1	0.674391828	0.674391828	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.69E-18	1	0.009909649	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	99070742	T	G	-	-	-	-	-	-	51	0	0	33	13	39.4	30	5	16.7	0	0	NA	1	0	0	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.966854291	0.983427146	2	1.965912281	1.965912281	1	0	NA	0	NA	NA	1	4	NA	1	1	6.37E-22	1	0.000000401	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	99073626	C	A	INPP4A	CCDS46369.1	r.?	-	-	intronic	47	0	0	52	19	36.5	29	5	17.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.128496294	4	2	2	2	2	0.871503706	1	3	NA	2	NA	0.128496294	NA	2.233986976	1.04956113	2.128496294	1.85277193	1.85277193	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.24E-30	1	0.000000336	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	99098180	C	T	C8orf47	CCDS34929.1	r.?	-	-	intronic	51	0	0	51	11	21.6	30	3	10	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.078275449	1.078275449	1	0.939292104	0.939292104	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.94E-15	1	0.000458697	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	99103021	A	T	-	-	-	-	-	-	41	0	0	33	9	27.3	32	0	0	0	0	NA	1	0	0	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.089820359	1.089820359	1	0	0	1	0	0	1	NA	NA	1	3	NA	1	1	6.76E-14	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	80973354	C	G	-	-	-	-	-	-	23	0	0	56	9	16.1	34	1	2.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5	5	3	3	2	2	1	1	NA	NA	NA	NA	NA	NA	1.125714571	1.125714571	1	0.341385965	0.341385965	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.20E-11	1	0.156694864	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	99147428	A	G	-	-	-	-	-	-	46	0	0	27	13	48.1	27	5	18.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1	3	1	2	0	1	1	1	NA	NA	NA	NA	NA	NA	1.439159681	1.439159681	1	1.807807018	1.807807018	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.29E-23	1	0.00000023	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	99169060	A	T	-	-	-	-	-	-	47	0	0	51	9	17.6	37	3	8.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	0.940922184	0.940922184	1	0.953526316	0.953526316	1	NA	NA	0	NA	NA	1	4	NA	1	1	4.92E-12	1	0.000855237	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	99205916	G	A	-	-	-	-	-	-	45	0	0	24	12	50	37	16	43.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.149838816	5.306384543	3	5	0	0	0.850161184	0.693615457	3	5	1	1	0.149838816	0.306384543	2.570927392	0.902028772	2.850161184	5.217831807	1.043566361	5	NA	NA	0	NA	NA	0	4	NA	1	1	6.25E-22	1	1.78E-27	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	99221504	C	T	MMS19	CCDS7464.1	r.?	-	-	intronic	53	0	0	25	14	56	40	11	27.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.235528942	1.117764471	2	2.412280702	1.206140351	2	NA	NA	1	NA	NA	1	4	NA	1	1	2.58E-26	1	9.88E-17	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	84320606	T	C	-	-	-	-	-	-	53	0	0	62	33	53.2	32	8	25	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5	5	3	3	2	2	1	1	NA	NA	NA	NA	NA	NA	3.719752495	1.239917498	3	2.942982456	0.980994152	3	NA	NA	1	NA	NA	1	4	NA	1	1	4.14E-59	1	3.69E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	99301758	G	A	-	-	-	-	-	-	55	0	0	46	7	15.2	24	2	8.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	0.812614613	0.812614613	1	0.977070175	0.977070175	1	NA	NA	0	NA	NA	1	4	NA	1	1	3.53E-09	1	0.006413403	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	99313213	G	T	-	-	-	-	-	-	32	0	0	39	19	48.7	41	7	17.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.673496181	2	2	1	0	1	0.326503819	NA	2	NA	1	NA	0.673496181	2.431111776	1.215555888	2	1.615167847	1.615167847	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.20E-33	1	1.51E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	99320655	T	G	-	-	-	-	-	-	52	0	0	51	17	33.3	23	0	0	2	0	0	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.673496181	2	2	1	0	1	0.326503819	NA	2	NA	1	NA	0.673496181	1.662341317	0.831170659	2	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	9.59E-27	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	91697092	G	A	-	-	-	-	-	-	52	0	0	41	11	26.8	48	8	16.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.605860279	1.605860279	1	1.798912281	1.798912281	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.34E-16	1	1.23E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	99475529	T	C	-	-	-	-	-	-	38	0	0	31	14	45.2	37	9	24.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.804391218	0.902195609	2	2.131578947	1.065789474	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.49E-24	1	2.14E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	99478779	T	C	ANKS1B	ENST00000329257	r.2549a>g	c.2549A>G	p.Q850R	missense	63	0	0	47	7	14.9	30	3	10	128	0	0	375	108	28.8	190	26	13.7	1.50E-21	TRUE	TRUE	3.357713288	3	2	2	1	1	0.642286712	1	3	NA	1	NA	0.357713288	NA	0.797109659	0.797109659	1	0.977192982	0.977192982	1	1.540722026	1.134791888	1.357713288	1.338754386	1.338754386	1	4	3	1	1	4.12E-09	2.21E-153	0.000458697	4.93E-29	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	13	92659131	A	T	GPC5	CCDS9468.1	r.?	-	-	intronic	43	0	0	43	5	11.6	35	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.695073852	0.695073852	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.00000257	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	94908721	C	A	GPC6	CCDS9469.1	r.?	-	-	intronic	58	0	0	55	14	25.5	46	13	28.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.527964072	1.527964072	1	3.04845614	1.52422807	2	NA	NA	1	NA	NA	1	4	NA	1	1	2.19E-20	1	1.07E-19	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	99602208	G	T	DOCK9	CCDS45062.1	r.?	-	-	intronic	54	0	0	42	13	31	36	6	16.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.85752495	0.928762475	2	1.798912281	1.798912281	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.72E-20	1	2.68E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	99715149	C	T	ANKS1B	ENST00000329257	r.?	-	-	intronic	15	0	0	35	16	45.7	25	2	8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.357713288	3	2	2	1	1	0.642286712	1	3	NA	1	NA	0.357713288	NA	2.44482627	1.036948081	2.357713288	0.781754386	0.781754386	1	NA	NA	1	NA	NA	0	4	NA	1	1	5.66E-28	1	0.006948068	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	99723592	C	T	-	-	-	-	-	-	29	0	0	46	8	17.4	24	2	8.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	0.868610778	0.868610778	1	0.75408349	0.75408349	1	NA	NA	1	NA	NA	0	4	NA	1	1	8.61E-11	1	0.006413403	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	99592659	G	T	DOCK9	CCDS45062.1	r.?	-	-	intronic	47	0	0	48	6	12.5	34	4	11.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.749001996	0.749001996	1	1.271087719	1.271087719	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.00000016	1	0.0000257	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	99741510	G	A	CNTN5	ENST00000279463	r.?	-	-	intronic	62	0	0	34	9	26.5	39	10	25.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.673496181	2	2	1	0	1	0.326503819	NA	2	NA	1	NA	0.673496181	1.322884232	1.322884232	1	2.418029058	1.209014529	2	NA	NA	1	NA	NA	0	4	NA	1	1	9.15E-14	1	5.44E-15	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	99753348	G	A	C7orf43	CCDS5687.1	r.1527c>u	c.1341C>T	p.G447G	silent	11	0	0	24	11	45.8	17	3	17.6	185	0	0	75	25	33.3	63	2	3.2	0.131245475	TRUE	TRUE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.744343313	1.372171657	2	1.895859649	1.895859649	1	1.995341317	0.997670659	2	0.344701754	0.344701754	1	4	3	1	1	1.15E-19	1.23E-38	0.0000807	0.03993132	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	9	99776663	G	A	HIATL2	ENST00000375223	r.?	-	-	upstream	12	0	0	40	6	15	21	5	23.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	0.598802395	0.598802395	1	2.563719298	0.854573099	3	NA	NA	0	NA	NA	1	4	NA	1	1	5.18E-08	1	5.95E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	100204190	T	C	TM9SF2	CCDS9493.1	r.?	-	-	intronic	41	0	0	45	5	11.1	30	0	0	0	0	NA	0	0	NA	1	0	0	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.665113772	0.665113772	1	0	0	1	NA	NA	1	0	0	1	3	NA	1	1	0.00000323	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	99873937	A	T	CNTN5	ENST00000279463	r.?	-	-	intronic	46	0	0	57	7	12.3	34	4	11.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.673496181	2	2	1	0	1	0.326503819	NA	2	NA	1	NA	0.673496181	0.614017964	0.614017964	1	1.114560269	1.114560269	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.66E-08	1	0.0000257	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	99945015	A	T	CNTN5	ENST00000279463	r.1526a>u	c.1521A>T	p.R507S	missense	40	0	0	42	10	23.8	27	1	3.7	143	0	0	127	13	10.2	136	23	16.9	2.14E-21	FALSE	TRUE	3	2.673496181	2	2	1	0	1	0.326503819	NA	2	NA	1	NA	0.673496181	1.1880998	1.1880998	1	0.349480762	NA	0	0.509185629	0.509185629	1	1.596276995	0.798138498	2	NA	3	1	1	1.24E-14	1.37E-13	0.126579904	4.40E-28	YES	1_1	0_1	somatic	custom.pulldown.HiSeq
PD9852b	2	100010281	C	A	EIF5B	CCDS42721.1	r.?	-	-	intronic	26	0	0	49	20	40.8	39	11	28.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.128496294	4	2	2	2	2	0.871503706	1	3	NA	2	NA	0.128496294	NA	2.497169003	1.173208058	2.128496294	3.037684211	1.518842105	2	NA	NA	1	NA	NA	1	4	NA	1	1	2.35E-33	1	7.20E-17	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	100072878	A	G	CNTN5	ENST00000279463	r.?	-	-	intronic	61	0	0	47	17	36.2	34	11	32.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.673496181	2	2	1	0	1	0.326503819	NA	2	NA	1	NA	0.673496181	1.80710978	0.90355489	2	3.060318026	1.530159013	2	NA	NA	1	NA	NA	0	4	NA	1	1	1.81E-27	1	1.26E-17	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	100106442	T	C	KIAA1529	CCDS35077.1	r.?	-	-	intronic	44	0	0	32	12	37.5	28	2	7.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	1.497005988	1.497005988	1	0.764807018	0.764807018	1	NA	NA	0	NA	NA	1	4	NA	1	1	5.03E-20	1	0.008668191	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	100229164	C	A	-	-	-	-	-	-	16	0	0	40	12	30	20	4	20	0	0	NA	1	1	100	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.79760479	0.898802395	2	2.154385965	2.154385965	1	5.992015968	5.992015968	1	NA	NA	1	4	NA	1	1	1.20E-18	0.005	0.00000284	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	100163772	C	T	-	-	-	-	-	-	36	0	0	35	15	42.9	20	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	1.71257485	1.71257485	1	0	0	1	NA	NA	0	NA	NA	1	4	NA	1	1	9.02E-26	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	100173426	C	T	-	-	-	-	-	-	58	0	0	47	8	17	20	3	15	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	0.848642715	0.848642715	1	1.362801488	1.362801488	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.03E-10	1	0.0001337	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	111054943	C	T	COL4A2	CCDS41907.1	r.?	-	-	intronic	25	0	0	58	18	31	34	4	11.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.85752495	0.928762475	2	1.271087719	1.271087719	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.42E-27	1	0.0000257	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	100205232	T	A	CNTN5	ENST00000279463	r.?	-	-	intronic	61	0	0	39	18	46.2	20	5	25	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.673496181	2	2	1	0	1	0.326503819	NA	2	NA	1	NA	0.673496181	2.306311377	1.153155689	2	2.361356502	1.180678251	2	NA	NA	1	NA	NA	0	4	NA	1	1	2.15E-31	1	4.55E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	112924466	C	A	AL162499.3	ENST00000503344	r.?	-	-	intronic	49	0	0	42	15	35.7	17	2	11.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.139149701	1.06957485	2	1.271087719	1.271087719	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.65E-24	1	0.003234386	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	100242477	A	G	ANKS1B	ENST00000329257	r.?	-	-	intronic	44	0	0	36	7	19.4	23	3	13	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.357713288	3	2	2	1	1	0.642286712	1	3	NA	1	NA	0.357713288	NA	1.037847476	1.037847476	1	1.270350877	1.270350877	1	NA	NA	1	NA	NA	0	4	NA	1	1	5.74E-10	1	0.000205387	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	100264993	C	T	AFF3	CCDS42723.1	r.?	-	-	intronic	55	0	0	58	18	31	41	5	12.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.128496294	4	2	2	2	2	0.871503706	1	3	NA	2	NA	0.128496294	NA	1.897358801	0.948679401	2	1.314175439	1.314175439	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.42E-27	1	0.00000202	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	24694571	A	T	NEDD8	CCDS9621.1	r.?	-	-	intronic	48	0	0	30	17	56.7	31	7	22.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.263473054	1.131736527	2	1.98245614	0.99122807	2	NA	NA	1	NA	NA	1	4	NA	1	1	8.59E-32	1	1.85E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	100270864	T	C	-	-	-	-	-	-	49	0	0	37	14	37.8	25	5	20	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.886982036	0.943491018	2	2.354385965	1.177192982	2	NA	NA	0	NA	NA	1	4	NA	1	1	3.35E-23	1	0.000000153	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	100403052	T	C	EPHB4	CCDS5706.1	r.?	-	-	intronic	16	0	0	38	5	13.2	16	0	0	0	0	NA	2	0	0	2	0	0	1	TRUE	TRUE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.790946108	0.790946108	1	0	0	1	0	0	1	0	0	1	3	NA	1	1	0.00000137	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	100420856	G	A	-	-	-	-	-	-	27	0	0	44	7	15.9	26	3	11.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	0.793730539	0.793730539	1	1.35377193	1.35377193	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.55E-09	1	0.000298167	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	100443171	G	A	-	-	-	-	-	-	58	0	0	44	24	54.5	30	5	16.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.673496181	2	2	1	0	1	0.326503819	NA	2	NA	1	NA	0.673496181	2.720648703	1.360324351	2	1.577386143	1.577386143	1	NA	NA	1	NA	NA	0	4	NA	1	1	9.53E-44	1	0.000000401	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	27476866	G	T	-	-	-	-	-	-	68	0	0	36	7	19.4	33	1	3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.774451098	0.774451098	1	0.263157895	0.263157895	1	NA	NA	1	NA	NA	1	4	NA	1	1	5.74E-10	1	0.15245715	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	27562355	G	A	-	-	-	-	-	-	61	0	0	32	9	28.1	35	5	14.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.121756487	1.121756487	1	1.254385965	1.254385965	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.94E-14	1	0.000000895	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	28352742	G	T	-	-	-	-	-	-	41	0	0	34	14	41.2	32	2	6.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.644710579	0.822355289	2	0.543859649	0.543859649	1	NA	NA	1	NA	NA	1	4	NA	1	1	7.74E-24	1	0.011224977	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	100567170	C	T	ENSG00000165895	CCDS44715.1	r.?	-	-	intronic	38	0	0	54	8	14.8	33	1	3	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.673496181	2	2	1	0	1	0.326503819	NA	2	NA	1	NA	0.673496181	0.738818363	0.738818363	1	0.28336278	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	3.31E-10	1	0.15245715	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	100608917	C	A	-	-	-	-	-	-	35	0	0	31	17	54.8	29	4	13.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.18762475	1.093812375	2	1.210526316	1.210526316	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.89E-31	1	0.0000134	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	100612340	A	G	FOXE1	CCDS35078.1	r.?	-	-	upstream	48	0	0	33	5	15.2	32	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	0.606786427	0.606786427	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	0.00000066	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	100614223	A	G	ADAMTS17	CCDS10383.1	r.?	-	-	intronic	54	0	0	40	8	20	26	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	4	3.293619843	3	2	1	1	1	0.706380157	NA	3	NA	1	NA	0.293619843	1.198403194	1.198403194	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	2.61E-11	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	100636751	C	A	AFF3	CCDS42723.1	r.?	-	-	intronic	34	0	0	52	20	38.5	39	11	28.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.128496294	4	2	2	2	2	0.871503706	1	3	NA	2	NA	0.128496294	NA	2.356397221	1.107071329	2.128496294	3.037684211	1.518842105	2	NA	NA	0	NA	NA	1	4	NA	1	1	1.03E-32	1	7.20E-17	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	100684376	C	G	AFF3	CCDS42723.1	r.?	-	-	intronic	59	0	0	55	20	36.4	30	9	30	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.128496294	4	2	2	2	2	0.871503706	1	3	NA	2	NA	0.128496294	NA	2.227866463	1.04668562	2.128496294	3.231578947	1.615789474	2	NA	NA	1	NA	NA	0	4	NA	1	1	4.08E-32	1	2.54E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	100694798	A	T	MUC17	CCDS34711.1	r.?	-	-	intronic	14	0	0	44	4	9.1	31	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.545273453	0.545273453	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.0000723	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	100726577	T	C	-	-	-	-	-	-	42	0	0	37	6	16.2	35	1	2.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	0.808706587	0.808706587	1	0.341385965	0.341385965	1	NA	NA	0	NA	NA	1	4	NA	1	1	3.18E-08	1	0.16091139	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	100747702	G	C	DAPP1	ENST00000296414	r.?	-	-	intronic	50	0	0	50	9	18	28	6	21.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	0.898562874	0.898562874	1	1.944263456	1.944263456	1	NA	NA	1	NA	NA	0	4	NA	1	1	4.07E-12	1	5.36E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	100796201	T	G	-	-	-	-	-	-	54	0	0	33	10	30.3	25	0	0	0	0	NA	0	0	NA	1	0	0	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.209580838	1.209580838	1	0	0	1	NA	NA	1	0	0	1	3	NA	1	1	8.14E-16	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	100865064	G	T	CDC14A	CCDS769.1	r.?	-	-	intronic	58	0	0	37	6	16.2	36	4	11.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	0.808706587	0.808706587	1	1.306684211	1.306684211	1	NA	NA	0	NA	NA	1	4	NA	1	1	3.18E-08	1	0.0000324	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	100890918	A	T	SIM1	CCDS5045.1	r.?	-	-	intronic	54	0	0	27	14	51.9	30	6	20	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.071856287	1.035928144	2	1.754385965	1.754385965	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.15E-25	1	8.37E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	100897959	T	G	PCCA	CCDS9496.2	r.?	-	-	intronic	56	0	0	43	9	20.9	34	4	11.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.252331337	1.252331337	1	1.271087719	1.271087719	1	NA	NA	1	NA	NA	1	4	NA	1	1	9.45E-13	1	0.0000257	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	121258511	C	T	-	-	-	-	-	-	52	0	0	48	15	31.2	34	5	14.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	4	4	0	0	1	1	NA	NA	NA	NA	NA	NA	1.869508982	0.934754491	2	1.583473684	1.583473684	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.86E-23	1	0.000000771	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	100957496	G	T	CDC14A	CCDS769.1	r.?	-	-	intronic	13	0	0	31	7	22.6	14	1	7.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.128195609	1.128195609	1	0.835807018	0.835807018	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.85E-10	1	0.067769881	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	100964687	G	A	-	-	-	-	-	-	43	0	0	41	10	24.4	33	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.46673429	3	1	2	1	1	0.53326571	1	2	NA	1	NA	0.46673429	NA	1.087935063	1.087935063	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	9.51E-15	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	101062898	C	G	EMID2	ENST00000397927	r.?	-	-	intronic	14	0	0	54	17	31.5	23	5	21.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.88748503	0.943742515	2	2.337508772	1.168754386	2	NA	NA	1	NA	NA	1	4	NA	1	1	3.02E-26	1	9.75E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	101095295	G	T	RGS22	CCDS43758.1	r.?	-	-	intronic	47	0	0	31	8	25.8	29	5	17.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.28794012	1.28794012	1	1.615582419	1.615582419	1	NA	NA	1	NA	NA	0	4	NA	1	1	2.78E-12	1	0.000000336	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	101103460	T	A	-	-	-	-	-	-	49	0	0	54	4	7.4	36	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.357713288	3	2	2	1	1	0.642286712	1	3	NA	1	NA	0.357713288	NA	0.395879965	1.106696278	0.357713288	0	0	1	NA	NA	1	NA	NA	0	3	NA	1	1	0.000161898	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	101105499	G	T	CNNM1	CCDS7478.2	r.?	-	-	intronic	45	0	0	19	3	15.8	33	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.630738523	0.630738523	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.000114071	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	101116888	C	T	-	-	-	-	-	-	61	0	0	55	19	34.5	40	10	25	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.357713288	3	2	2	1	1	0.642286712	1	3	NA	1	NA	0.357713288	NA	1.845656593	0.922828297	2	2.442982456	1.221491228	2	NA	NA	0	NA	NA	1	4	NA	1	1	4.51E-30	1	7.22E-15	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	101261740	C	T	MYL10	CCDS34713.1	r.?	-	-	intronic	28	0	0	33	6	18.2	12	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.090546906	1.090546906	1	0	0	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.54E-08	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	101272615	G	A	-	-	-	-	-	-	38	0	0	61	16	26.2	39	3	7.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	1.400690978	1.400690978	1	0.906438596	0.906438596	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.50E-23	1	0.000998458	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	101320146	G	T	GABBR2	CCDS6736.1	r.?	-	-	intronic	50	0	0	42	17	40.5	27	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	1.616766467	1.616766467	1	0	0	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.73E-28	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	101371093	A	G	ANO4	CCDS31884.1	r.?	-	-	intronic	31	0	0	39	16	41	32	4	12.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.357713288	3	2	2	1	1	0.642286712	1	3	NA	1	NA	0.357713288	NA	2.193388995	0.93030353	2.357713288	1.221491228	1.221491228	1	NA	NA	1	NA	NA	0	4	NA	1	1	5.16E-27	1	0.0000201	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	101373946	C	G	SLC30A7	CCDS776.1	r.?	-	-	intronic	33	0	0	42	14	33.3	35	11	31.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.662341317	0.831170659	2	3.696385965	1.232128655	3	NA	NA	0	NA	NA	1	4	NA	1	1	2.83E-22	1	1.82E-17	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	45328700	G	A	-	-	-	-	-	-	51	0	0	35	21	60	23	10	43.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.395209581	1.19760479	2	3.815789474	1.907894737	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.03E-39	1	1.05E-17	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	101423700	G	A	-	-	-	-	-	-	33	0	0	37	17	45.9	32	5	15.6	0	0	NA	0	0	NA	1	0	0	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	2.453882286	1.226941143	2	1.836421053	1.836421053	1	NA	NA	0	0	0	1	4	NA	1	1	1.10E-29	1	0.000000562	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	101452741	G	A	-	-	-	-	-	-	44	0	0	38	18	47.4	37	11	29.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.892215569	0.946107784	2	2.605263158	1.302631579	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.16E-31	1	3.70E-17	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	101508410	G	A	-	-	-	-	-	-	57	0	0	40	15	37.5	29	5	17.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	1.872005988	0.936002994	2	1.562679039	1.562679039	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.09E-24	1	0.000000336	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	101527341	G	A	ANKS6	CCDS43856.1	r.?	-	-	intronic	46	0	0	28	8	28.6	32	9	28.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	1.141716567	1.141716567	1	3.026912281	1.00897076	3	NA	NA	0	NA	NA	1	4	NA	1	1	1.11E-12	1	4.94E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	49096827	G	A	-	-	-	-	-	-	64	0	0	38	5	13.2	34	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.526946108	0.526946108	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.00000137	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	101654118	C	A	-	-	-	-	-	-	49	0	0	37	10	27	23	5	21.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	1.077844311	1.077844311	1	2.337508772	1.168754386	2	NA	NA	0	NA	NA	1	4	NA	1	1	3.01E-15	1	9.75E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	61633444	T	C	-	-	-	-	-	-	32	0	0	30	14	46.7	33	9	27.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	2.331271457	1.165635729	2	2.667736842	1.333868421	2	NA	NA	1	NA	NA	1	4	NA	1	1	8.24E-25	1	6.76E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	101656616	A	G	-	-	-	-	-	-	49	0	0	54	22	40.7	33	3	9.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	2.17588255	1.087941275	2	1.071245614	1.071245614	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.60E-36	1	0.000609557	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	101664812	G	A	-	-	-	-	-	-	37	0	0	34	16	47.1	19	3	15.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.357713288	3	2	2	1	1	0.642286712	1	3	NA	1	NA	0.357713288	NA	2.51972248	1.068714543	2.357713288	1.543964912	1.543964912	1	NA	NA	0	NA	NA	0	4	NA	1	1	3.09E-28	1	0.000114071	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	101758800	C	T	-	-	-	-	-	-	50	0	0	48	17	35.4	37	3	8.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	1.767173653	0.883586826	2	0.735912803	0.735912803	1	NA	NA	1	NA	NA	0	4	NA	1	1	2.80E-27	1	0.000855237	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	101764013	A	G	CUX1	CCDS5721.1	r.?	-	-	intronic	44	0	0	50	14	28	38	6	15.8	1	0	0	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.677764471	0.838882236	2	1.701964912	1.701964912	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.84E-21	1	3.76E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	101920968	G	A	NALCN	CCDS9498.1	r.?	-	-	intronic	46	0	0	45	7	15.6	34	2	5.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.934754491	0.934754491	1	0.63554386	0.63554386	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.000000003	1	0.012612579	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	101920969	C	G	NALCN	CCDS9498.1	r.?	-	-	intronic	45	0	0	48	8	16.7	35	2	5.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.000666667	1.000666667	1	0.614	0.614	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.23E-10	1	0.013332991	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	85085870	G	T	-	-	-	-	-	-	51	0	0	51	29	56.9	39	6	15.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	2.840457086	1.420228543	2	1.504877193	1.504877193	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.61E-53	1	4.43E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	101961635	G	A	GRIK2	CCDS5049.1	r.?	-	-	intronic	61	0	0	35	16	45.7	24	10	41.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.824351297	0.912175649	2	3.657894737	1.828947368	2	NA	NA	1	NA	NA	1	4	NA	1	1	5.66E-28	1	1.80E-17	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	101961644	G	A	GRIK2	CCDS5049.1	r.?	-	-	intronic	60	0	0	31	12	38.7	23	10	43.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.54491018	1.54491018	1	3.815789474	1.907894737	2	NA	NA	1	NA	NA	1	4	NA	1	1	3.16E-20	1	1.05E-17	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	101996957	G	A	PCSK6	ENST00000348070	r.?	-	-	intronic	36	0	0	44	14	31.8	26	1	3.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3.293619843	2	2	1	1	1	0.706380157	NA	3	NA	1	NA	0.293619843	1.587461078	0.793730539	2	0.382490887	0.382490887	1	NA	NA	1	NA	NA	0	4	NA	1	1	6.10E-22	1	0.122190858	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	102026136	G	C	-	-	-	-	-	-	52	0	0	52	5	9.6	25	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	5	5	4	3	1	2	1	1	NA	NA	NA	NA	NA	NA	0.671233533	0.671233533	1	0	NA	0	NA	NA	0	NA	NA	0	NA	NA	1	1	0.00000668	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	102061081	G	T	NALCN	CCDS9498.1	r.?	-	-	intronic	42	0	0	52	20	38.5	27	2	7.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.306926148	1.153463074	2	0.797122807	0.797122807	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.03E-32	1	0.00807567	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	102135385	C	T	-	-	-	-	-	-	19	0	0	50	19	38	25	6	24	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.896966068	0.948483034	2	2.25430105	1.127150525	2	NA	NA	1	NA	NA	0	4	NA	1	1	5.00E-31	1	2.55E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	102135461	G	A	-	-	-	-	-	-	59	0	0	39	7	17.9	40	4	10	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3.293619843	2	2	1	1	1	0.706380157	NA	3	NA	1	NA	0.293619843	0.893570858	0.893570858	1	1.006554967	1.006554967	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.04E-09	1	0.0000495	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	102187197	C	G	PPP3CA	CCDS34037.1	r.?	-	-	intronic	60	0	0	50	5	10	37	1	2.7	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	0.499201597	0.499201597	1	0.245304268	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	0.00000549	1	0.169281299	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	102303385	T	C	ENSG00000237157	ENST00000413770	r.?	-	-	downstream	9	0	0	11	3	27.3	8	1	12.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3.293619843	2	2	1	1	1	0.706380157	NA	3	NA	1	NA	0.293619843	1.362820359	1.362820359	1	1.258193708	1.258193708	1	NA	NA	0	NA	NA	0	4	NA	1	1	0.00002	1	0.039306956	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	102329031	C	G	PPP2R5C	CCDS9964.1	r.?	-	-	intronic	52	0	0	34	15	44.1	37	8	21.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.149838816	5.306384543	3	5	0	0	0.850161184	0.693615457	3	5	1	1	0.149838816	0.306384543	2.26755796	1.13377898	2	2.608915903	0.96855544	2.693615457	NA	NA	0	NA	NA	1	4	NA	1	1	5.18E-26	1	1.33E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	102367261	C	G	-	-	-	-	-	-	71	0	0	48	4	8.3	34	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.497337325	0.497337325	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.000102016	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	53763822	C	G	-	-	-	-	-	-	52	0	0	35	20	57.1	25	10	40	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.279441118	1.139720559	2	3.50877193	1.754385965	2	NA	NA	1	NA	NA	1	4	NA	1	1	2.88E-37	1	2.98E-17	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	102435595	A	G	BANK1	ENST00000504592	r.?	-	-	intronic	57	0	0	35	11	31.4	39	6	15.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	1.567493014	1.567493014	1	1.399142861	1.399142861	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.82E-17	1	4.43E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	102442160	T	C	-	-	-	-	-	-	53	0	0	50	9	18	48	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.673496181	2	2	1	0	1	0.326503819	NA	2	NA	1	NA	0.673496181	0.898562874	0.898562874	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	4.07E-12	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	102479412	C	A	NUP37	CCDS9089.1	r.?	-	-	intronic	45	0	0	41	7	17.1	34	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.357713288	3	2	2	1	1	0.642286712	1	3	NA	1	NA	0.357713288	NA	0.914803703	0.914803703	1	0	0	1	NA	NA	1	NA	NA	0	3	NA	1	1	1.51E-09	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	102507632	C	T	-	-	-	-	-	-	36	0	0	41	11	26.8	22	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	1.069860279	1.069860279	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	1.34E-16	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	102539564	G	T	-	-	-	-	-	-	51	0	0	69	17	24.6	49	8	16.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.128496294	4	2	2	2	2	0.871503706	1	3	NA	2	NA	0.128496294	NA	1.505646016	0.752823008	2	1.755824561	1.755824561	1	NA	NA	0	NA	NA	1	4	NA	1	1	3.56E-24	1	1.47E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	101656543	C	G	-	-	-	-	-	-	46	0	0	54	24	44.4	24	5	20.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.357713288	3	2	2	1	1	0.642286712	1	3	NA	1	NA	0.357713288	NA	2.37527979	1.007450652	2.357713288	2.032561404	2.032561404	1	NA	NA	1	NA	NA	1	4	NA	1	1	7.24E-41	1	0.000000123	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	106883221	C	T	POLR3B	CCDS9105.1	r.?	-	-	intronic	52	0	0	59	33	55.9	29	10	34.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.357713288	3	2	2	1	1	0.642286712	1	3	NA	1	NA	0.357713288	NA	2.990498654	1.268389447	2.357713288	3.371315789	1.685657895	2	NA	NA	0	NA	NA	0	4	NA	1	1	4.06E-60	1	1.79E-16	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	102734338	C	T	IL1R1	ENST00000409589	r.?	-	-	intronic	48	0	0	85	18	21.2	58	9	15.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.128496294	4	2	2	2	2	0.871503706	1	3	NA	2	NA	0.128496294	NA	1.2975486	1.2975486	1	1.669649123	1.669649123	1	NA	NA	0	NA	NA	1	4	NA	1	1	3.35E-24	1	1.67E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	102756370	C	T	NAPEPLD	CCDS5729.1	r.?	-	-	intronic	26	0	0	59	22	37.3	31	7	22.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.235021956	1.117510978	2	2.43445614	1.21722807	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.79E-35	1	1.85E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	102790280	C	T	-	-	-	-	-	-	50	0	0	42	21	50	36	8	22.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	2.673074386	1.336537193	2	2.613368421	0.871122807	3	NA	NA	0	NA	NA	1	4	NA	1	1	2.32E-37	1	1.04E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	102803566	G	A	-	-	-	-	-	-	52	0	0	46	7	15.2	33	0	0	145	0	0	364	28	7.7	309	2	0.6	0.815370923	TRUE	TRUE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	0.812614613	0.812614613	1	0	0	1	0.411653455	1.162426783	0.354132803	0.070631579	0.070631579	1	3	2	1	1	3.53E-09	4.26E-24	1	0.457571392	YES	1_1	0_0	somatic	custom.pulldown.HiSeq
PD9852b	11	102862231	C	A	-	-	-	-	-	-	52	0	0	20	4	20	22	5	22.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.673496181	2	2	1	0	1	0.326503819	NA	2	NA	1	NA	0.673496181	0.998403194	0.998403194	1	2.144111703	2.144111703	1	NA	NA	1	NA	NA	0	4	NA	1	1	0.00000284	1	7.67E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	103048013	T	G	FGF14	CCDS9500.1	r.?	-	-	intronic	44	0	0	57	19	33.3	33	5	15.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.995341317	0.997670659	2	1.637333333	1.637333333	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.01E-29	1	0.00000066	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	103055595	G	A	INVS	CCDS6746.1	r.?	-	-	intronic	44	0	0	30	6	20	30	3	10	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	0.798403194	0.798403194	1	1.077192982	1.077192982	1	NA	NA	0	NA	NA	1	4	NA	1	1	8.37E-09	1	0.000458697	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	54246803	A	T	-	-	-	-	-	-	53	0	0	29	5	17.2	36	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.686626747	0.686626747	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.000000336	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	65543100	C	T	MAX	CCDS9771.1	r.708g>a	c.?	p.?	3'UTR variant	22	0	0	38	10	26.3	21	1	4.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.0499002	1.0499002	1	0.421052632	0.421052632	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.06E-15	1	0.099912572	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	103223244	A	G	-	-	-	-	-	-	68	0	0	50	17	34	31	3	9.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	1.817690582	0.908845291	2	1.141877193	1.141877193	1	NA	NA	0	NA	NA	1	4	NA	1	1	6.43E-27	1	0.000505952	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	103276692	C	T	DYNC2H1	CCDS44717.1	r.?	-	-	intronic	45	0	0	39	13	33.3	36	6	16.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.673496181	2	2	1	0	1	0.326503819	NA	2	NA	1	NA	0.673496181	1.662341317	0.831170659	2	1.577386143	1.577386143	1	NA	NA	1	NA	NA	0	4	NA	1	1	8.79E-21	1	2.68E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	103284352	C	T	RELN	CCDS47680.1	r.?	-	-	intronic	47	0	0	43	6	14	31	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.838882236	0.838882236	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	8.13E-08	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	103288526	C	T	SLC9A2	CCDS2062.1	r.?	-	-	intronic	37	0	0	45	11	24.4	30	3	10	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.128496294	4	2	2	2	2	0.871503706	1	3	NA	2	NA	0.128496294	NA	1.493404992	1.493404992	1	1.077192982	1.077192982	1	NA	NA	1	NA	NA	0	4	NA	1	1	4.24E-16	1	0.000458697	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	103312912	A	G	SLC9A2	CCDS2062.1	r.?	-	-	intronic	57	0	0	56	5	8.9	32	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.128496294	4	2	2	2	2	0.871503706	1	3	NA	2	NA	0.128496294	NA	0.544725591	0.544725591	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.00000965	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	103344484	C	T	-	-	-	-	-	-	59	0	0	52	10	19.2	34	2	5.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	0.958467066	0.958467066	1	0.536035252	0.536035252	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.28E-13	1	0.012612579	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	103365183	C	A	-	-	-	-	-	-	61	0	0	38	19	50	34	7	20.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	2.673074386	1.336537193	2	2.425017544	0.808339181	3	NA	NA	0	NA	NA	1	4	NA	1	1	6.16E-34	1	3.73E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	103404593	G	A	-	-	-	-	-	-	8	0	0	37	5	13.5	10	2	20	0	0	NA	1	0	0	0	0	NA	1	TRUE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	0.673922156	0.673922156	1	1.817068651	1.817068651	1	0	0	1	NA	NA	0	4	NA	1	1	0.00000119	1	0.001095391	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	103440856	C	G	COL11A1	CCDS779.1	r.?	-	-	intronic	32	0	0	38	6	15.8	22	1	4.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	0.788738523	0.788738523	1	0.529736842	0.529736842	1	NA	NA	0	NA	NA	1	4	NA	1	1	3.76E-08	1	0.104413009	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	103461466	C	A	-	-	-	-	-	-	57	0	0	29	8	27.6	24	1	4.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	1.101796407	1.101796407	1	0.452421053	0.452421053	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.53E-12	1	0.113346489	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	103468708	C	T	ENSG00000198752	CCDS9978.1	r.?	-	-	intronic	21	0	0	25	11	44	32	10	31.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.532307329	8	4	7	0	1	0.467692671	1	4	NA	1	NA	0.532307329	NA	2.870702251	0.95690075	3	4.608842105	0.921768421	5	NA	NA	0	NA	NA	1	4	NA	1	1	2.04E-19	1	5.70E-16	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	103477993	G	A	-	-	-	-	-	-	70	0	0	52	12	23.1	45	3	6.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.357713288	3	2	2	1	1	0.642286712	1	3	NA	1	NA	0.357713288	NA	1.235787458	1.235787458	1	0.654719298	0.654719298	1	NA	NA	1	NA	NA	0	4	NA	1	1	4.19E-17	1	0.001516071	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	103515936	C	G	COL11A1	CCDS779.1	r.?	-	-	intronic	38	0	0	38	4	10.5	33	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	0.524161677	0.524161677	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	0.0000403	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	103552883	G	A	RELN	CCDS47680.1	r.?	-	-	intronic	44	0	0	51	19	37.3	44	8	18.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.235021956	1.117510978	2	1.960491228	0.980245614	2	NA	NA	1	NA	NA	1	4	NA	1	1	7.94E-31	1	5.90E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	103604716	T	G	-	-	-	-	-	-	47	0	0	48	15	31.2	36	3	8.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	1.245508982	1.245508982	1	0.894070175	0.894070175	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.86E-23	1	0.000788827	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	72081595	G	A	SIPA1L1	CCDS9807.1	r.?	-	-	intronic	60	0	0	40	23	57.5	37	6	16.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	3	2	3	0	0	1	1	NA	NA	NA	NA	NA	NA	2.295409182	1.147704591	2	1.583052632	1.583052632	1	NA	NA	0	NA	NA	1	4	NA	1	1	9.75E-43	1	3.18E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	103696382	G	A	C12orf42	CCDS44963.1	r.?	-	-	intronic	26	0	0	40	10	25	14	1	7.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.357713288	3	2	2	1	1	0.642286712	1	3	NA	1	NA	0.357713288	NA	1.337432314	1.337432314	1	0.693807018	0.693807018	1	NA	NA	0	NA	NA	0	4	NA	1	1	7.22E-15	1	0.067769881	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	103706491	G	T	SLC10A2	CCDS9506.1	r.?	-	-	intronic	44	0	0	37	6	16.2	40	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.970706587	0.970706587	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	3.18E-08	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	103727489	A	C	-	-	-	-	-	-	40	0	0	40	16	40	30	7	23.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.396806387	1.198403194	2	2.509859649	1.254929825	2	NA	NA	1	NA	NA	1	4	NA	1	1	8.56E-27	1	1.44E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	103731629	A	T	-	-	-	-	-	-	47	0	0	56	10	17.9	32	3	9.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.128496294	4	2	2	2	2	0.871503706	1	3	NA	2	NA	0.128496294	NA	1.095571695	1.095571695	1	1.012561404	1.012561404	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.82E-13	1	0.000556213	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	103748030	C	G	-	-	-	-	-	-	37	0	0	36	5	13.9	42	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.128496294	4	2	2	2	2	0.871503706	1	3	NA	2	NA	0.128496294	NA	0.850751204	0.850751204	1	0	0	1	NA	NA	1	NA	NA	0	3	NA	1	1	0.00000104	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	103808419	A	G	C12orf42	CCDS44963.1	r.?	-	-	intronic	52	0	0	41	21	51.2	33	9	27.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.357713288	3	2	2	1	1	0.642286712	1	3	NA	1	NA	0.357713288	NA	2.739061379	1.161744896	2.357713288	2.667736842	1.333868421	2	NA	NA	1	NA	NA	0	4	NA	1	1	1.17E-37	1	6.76E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	72475503	T	C	RGS6	CCDS9808.1	r.?	-	-	intronic	32	0	0	22	12	54.5	27	9	33.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	3	2	3	0	0	1	1	NA	NA	NA	NA	NA	NA	2.175648703	1.087824351	2	3.254052632	1.084684211	3	NA	NA	0	NA	NA	1	4	NA	1	1	1.51E-22	1	8.44E-15	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	78469606	C	A	-	-	-	-	-	-	54	0	0	32	16	50	31	6	19.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	3	2	3	0	0	1	1	NA	NA	NA	NA	NA	NA	1.996007984	0.998003992	2	1.895754386	1.895754386	1	NA	NA	0	NA	NA	1	4	NA	1	1	8.51E-29	1	1.03E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	83076914	G	T	-	-	-	-	-	-	43	0	0	37	7	18.9	37	2	5.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	3	2	3	0	0	1	1	NA	NA	NA	NA	NA	NA	0.754491018	0.754491018	1	0.527684211	0.527684211	1	NA	NA	0	NA	NA	1	4	NA	1	1	7.05E-10	1	0.014826063	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	103872926	G	T	C12orf42	CCDS44963.1	r.?	-	-	intronic	47	0	0	46	9	19.6	36	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.357713288	3	2	2	1	1	0.642286712	1	3	NA	1	NA	0.357713288	NA	1.048546934	1.048546934	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	1.82E-12	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	103910106	C	G	-	-	-	-	-	-	48	0	0	18	11	61.1	31	5	16.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.439121756	1.219560878	2	1.412280702	1.412280702	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.50E-21	1	0.000000476	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	86058329	A	T	FLRT2	CCDS9877.1	r.?	-	-	intronic	58	0	0	41	9	22	30	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	3	2	3	0	0	1	1	NA	NA	NA	NA	NA	NA	0.878243513	0.878243513	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	5.92E-13	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	103966938	C	G	-	-	-	-	-	-	24	0	0	41	19	46.3	36	7	19.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	2.311303393	1.155651697	2	1.822226682	1.822226682	1	NA	NA	1	NA	NA	0	4	NA	1	1	4.20E-33	1	5.74E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	104006422	A	C	-	-	-	-	-	-	48	0	0	55	6	10.9	31	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.653129741	0.653129741	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.000000367	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	104048239	A	C	-	-	-	-	-	-	38	0	0	40	11	27.5	35	8	22.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	1.470190912	1.470190912	1	2.69577193	0.898590643	3	NA	NA	0	NA	NA	1	4	NA	1	1	9.88E-17	1	8.15E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	104108191	G	T	STAB2	CCDS31888.1	r.?	-	-	intronic	48	0	0	56	6	10.7	26	3	11.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.357713288	3	2	2	1	1	0.642286712	1	3	NA	1	NA	0.357713288	NA	0.57242103	0.57242103	1	1.12377193	1.12377193	1	NA	NA	1	NA	NA	0	4	NA	1	1	0.000000409	1	0.000298167	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	104115529	C	G	AMY2B	CCDS782.1	r.?	-	-	intronic	71	0	0	49	16	32.7	45	11	24.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.632389222	0.816194611	2	2.872350877	0.957450292	3	NA	NA	0	NA	NA	1	4	NA	1	1	4.37E-25	1	4.24E-16	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	111307923	G	T	CCDC63	CCDS9151.1	r.?	-	-	intronic	41	0	0	37	6	16.2	27	5	18.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.357713288	3	2	2	1	1	0.642286712	1	3	NA	1	NA	0.357713288	NA	0.86665614	0.86665614	1	1.807807018	1.807807018	1	NA	NA	1	NA	NA	0	4	NA	1	1	3.18E-08	1	0.00000023	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	104169975	T	C	-	-	-	-	-	-	39	0	0	21	9	42.9	21	1	4.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.71257485	1.71257485	1	0.421052632	0.421052632	1	NA	NA	1	NA	NA	1	4	NA	1	1	5.44E-16	1	0.099912572	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	104254097	G	T	-	-	-	-	-	-	54	0	0	32	7	21.9	32	2	6.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	1.093251497	1.093251497	1	0.563291282	0.563291282	1	NA	NA	1	NA	NA	0	4	NA	1	1	2.36E-10	1	0.011224977	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	104304946	G	A	AMY1C	CCDS30784.1	r.?	-	-	downstream	45	0	0	39	14	35.9	29	5	17.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.792133733	0.896066866	2	2.02477193	2.02477193	1	NA	NA	0	NA	NA	1	4	NA	1	1	8.19E-23	1	0.000000336	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	104335407	C	T	-	-	-	-	-	-	55	0	0	39	8	20.5	32	1	3.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.818363273	0.818363273	1	0.271929825	0.271929825	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.09E-11	1	0.14819814	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	104338615	A	T	-	-	-	-	-	-	24	0	0	29	18	62.1	18	5	27.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.479041916	1.239520958	2	2.438596491	1.219298246	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.25E-34	1	2.54E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	104343049	C	A	-	-	-	-	-	-	69	1	1.4	42	19	45.2	34	3	8.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	2.256391218	1.128195609	2	0.799510206	0.799510206	1	NA	NA	1	NA	NA	0	4	NA	0.292392265	1	7.64E-33	1	0.000666058	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	104408632	G	A	ENSG00000232402	ENST00000438939	r.?	-	-	intronic	40	0	0	31	16	51.6	15	7	46.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.05988024	1.02994012	2	4.096491228	2.048245614	2	NA	NA	1	NA	NA	1	4	NA	1	1	4.27E-29	1	4.85E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	104430289	G	T	SLC25A32	CCDS6300.1	r.?	-	-	upstream	26	0	0	40	6	15	26	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0.748802395	0.748802395	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	5.18E-08	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	104441163	G	A	LHFPL3	ENST00000424859	r.?	-	-	intronic	53	0	0	41	11	26.8	24	6	25	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.605860279	1.605860279	1	2.692982456	1.346491228	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.34E-16	1	1.95E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	104477287	G	A	-	-	-	-	-	-	53	0	0	28	12	42.9	34	5	14.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.71257485	0.856287425	2	1.289473684	1.289473684	1	NA	NA	1	NA	NA	1	4	NA	1	1	6.90E-21	1	0.000000771	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	104483120	C	T	HCFC2	CCDS9097.1	r.?	-	-	intronic	34	0	0	39	5	12.8	31	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.357713288	3	2	2	1	1	0.642286712	1	3	NA	1	NA	0.357713288	NA	0.684765345	0.684765345	1	0	0	1	NA	NA	1	NA	NA	0	3	NA	1	1	0.00000156	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	104544312	G	T	-	-	-	-	-	-	43	0	0	36	19	52.8	28	8	28.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.357713288	3	2	2	1	1	0.642286712	1	3	NA	1	NA	0.357713288	NA	2.824657047	1.198049424	2.357713288	2.79477193	1.397385965	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.51E-34	1	1.11E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	104570803	G	C	-	-	-	-	-	-	60	0	0	55	10	18.2	47	2	4.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.128496294	4	2	2	2	2	0.871503706	1	3	NA	2	NA	0.128496294	NA	1.113933232	1.113933232	1	0.463192982	0.463192982	1	NA	NA	1	NA	NA	0	4	NA	1	1	2.33E-13	1	0.02328732	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	104574514	T	G	-	-	-	-	-	-	38	0	0	43	5	11.6	39	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.673496181	2	2	1	0	1	0.326503819	NA	2	NA	1	NA	0.673496181	0.579073852	0.579073852	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	0.00000257	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	104584820	G	A	MIR203	ENST00000384836	r.?	-	-	downstream	12	0	0	34	21	61.8	13	6	46.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.532307329	8	4	7	0	1	0.467692671	1	4	NA	1	NA	0.532307329	NA	4.032031797	1.008007949	4	6.824631579	0.974947368	7	NA	NA	0	NA	NA	1	4	NA	1	1	4.16E-40	1	2.60E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	104641092	T	G	-	-	-	-	-	-	46	0	0	53	8	15.1	38	2	5.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.904794411	0.904794411	1	0.570912281	0.570912281	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.83E-10	1	0.015598339	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	104641510	G	T	-	-	-	-	-	-	40	0	0	38	6	15.8	23	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.946738523	0.946738523	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	3.76E-08	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	104668935	C	A	MLL5	CCDS34723.1	r.?	-	-	intronic	31	0	0	54	21	38.9	46	10	21.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.330894212	1.165447106	2	2.337508772	1.168754386	2	NA	NA	1	NA	NA	1	4	NA	1	1	2.12E-34	1	3.38E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	116058418	G	A	-	-	-	-	-	-	28	0	0	50	8	16	28	3	10.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.357713288	3	2	2	1	1	0.642286712	1	3	NA	1	NA	0.357713288	NA	0.855956681	0.855956681	1	1.045596491	1.045596491	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.74E-10	1	0.000372895	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	104678861	C	T	-	-	-	-	-	-	49	0	0	33	19	57.6	20	8	40	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.299401198	1.149700599	2	3.50877193	1.754385965	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.46E-35	1	4.66E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	104697177	G	C	-	-	-	-	-	-	52	0	0	53	21	39.6	48	12	25	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.128496294	4	2	2	2	2	0.871503706	1	3	NA	2	NA	0.128496294	NA	2.423722856	1.138701938	2.128496294	2.692982456	1.346491228	2	NA	NA	0	NA	NA	1	4	NA	1	1	1.30E-34	1	1.44E-17	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	104734785	G	A	-	-	-	-	-	-	40	0	0	43	8	18.6	27	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	0.994383671	0.994383671	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	4.85E-11	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	104736494	G	C	CNNM2	CCDS44474.1	r.?	-	-	intronic	35	0	0	42	12	28.6	16	2	12.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.141716567	1.141716567	1	1.096491228	1.096491228	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.35E-18	1	0.002863359	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	104797958	G	T	-	-	-	-	-	-	41	0	0	58	5	8.6	33	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.128496294	4	2	2	2	2	0.871503706	1	3	NA	2	NA	0.128496294	NA	0.526364055	0.526364055	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.0000115	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	104813363	G	C	CASP4	CCDS8327.1	r.?	-	-	downstream	51	0	0	31	8	25.8	25	1	4	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.673496181	2	2	1	0	1	0.326503819	NA	2	NA	1	NA	0.673496181	1.28794012	1.28794012	1	0.37781704	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	2.78E-12	1	0.117779757	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	104859996	G	T	-	-	-	-	-	-	53	0	0	42	5	11.9	36	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	0.5940499	0.5940499	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	0.00000228	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	104881276	G	T	-	-	-	-	-	-	42	0	0	61	6	9.8	37	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.128496294	4	2	2	2	2	0.871503706	1	3	NA	2	NA	0.128496294	NA	0.599810202	0.599810202	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.000000685	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	104931072	T	A	-	-	-	-	-	-	42	0	0	34	6	17.6	36	2	5.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.70259481	0.70259481	1	0.49122807	0.49122807	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.86E-08	1	0.014070883	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	104954685	C	A	-	-	-	-	-	-	45	0	0	62	19	30.6	43	6	14	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.833556886	0.916778443	2	1.508070175	1.508070175	1	NA	NA	1	NA	NA	1	4	NA	1	1	6.66E-29	1	8.13E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	22470897	T	A	-	-	-	-	-	-	34	0	0	30	9	30	31	10	32.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.19760479	1.19760479	1	2.833333333	1.416666667	2	NA	NA	1	NA	NA	1	4	NA	1	1	2.54E-14	1	3.94E-16	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	105071389	A	C	-	-	-	-	-	-	49	0	0	39	13	33.3	35	6	17.1	0	0	NA	1	1	100	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.995341317	0.997670659	2	1.842	1.842	1	5.992015968	5.992015968	1	NA	NA	1	4	NA	1	1	8.79E-21	0.005	2.24E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	55676297	T	C	-	-	-	-	-	-	49	0	0	61	23	37.7	33	4	12.1	0	0	NA	0	0	NA	2	0	0	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.25899002	1.12949501	2	1.303403509	1.303403509	1	NA	NA	1	0	0	1	4	NA	1	1	3.73E-37	1	0.0000228	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	105122280	G	C	-	-	-	-	-	-	49	0	0	56	17	30.4	31	5	16.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.128496294	4	2	2	2	2	0.871503706	1	3	NA	2	NA	0.128496294	NA	1.860635728	0.930317864	2	1.734280702	1.734280702	1	NA	NA	0	NA	NA	0	4	NA	1	1	6.22E-26	1	0.000000476	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	105139557	G	T	-	-	-	-	-	-	59	0	0	28	13	46.4	27	6	22.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.852295409	0.926147705	2	1.947368421	1.947368421	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.26E-23	1	4.23E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	105162318	G	A	-	-	-	-	-	-	43	0	0	47	5	10.6	21	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.673496181	2	2	1	0	1	0.326503819	NA	2	NA	1	NA	0.673496181	0.529153693	0.529153693	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	0.00000402	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	105204523	C	T	-	-	-	-	-	-	33	0	0	23	4	17.4	28	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.694610778	0.694610778	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.00000513	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	95092024	G	T	SERPINA3	CCDS32150.1	r.?	-	-	downstream	42	0	0	26	9	34.6	25	2	8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.149838816	3	3	3	0	0	0.850161184	1	3	NA	1	NA	0.149838816	NA	1.779081755	0.961582034	1.850161184	0.781754386	0.781754386	1	NA	NA	0	NA	NA	0	4	NA	1	1	5.65E-15	1	0.006948068	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	105229348	C	T	SIVA1	CCDS9992.1	r.?	-	-	downstream	20	0	0	20	10	50	42	16	38.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.532307329	8	4	7	0	1	0.467692671	1	4	NA	1	NA	0.532307329	NA	3.262161648	0.940729747	3.467692671	5.628105263	0.938017544	6	NA	NA	0	NA	NA	1	4	NA	1	1	1.72E-18	1	2.25E-26	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	105237796	G	A	-	-	-	-	-	-	44	0	0	33	12	36.4	30	9	30	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.181093812	1.090546906	2	3.231578947	1.615789474	2	NA	NA	1	NA	NA	1	4	NA	1	1	7.86E-20	1	2.54E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	105251131	G	A	-	-	-	-	-	-	51	0	0	47	20	42.6	37	4	10.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	2.126598802	1.063299401	2	0.981217071	0.981217071	1	NA	NA	1	NA	NA	0	4	NA	1	1	8.18E-34	1	0.0000362	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	97196916	C	A	-	-	-	-	-	-	48	0	0	20	3	15	25	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.149838816	5.306384543	3	5	0	0	0.850161184	0.693615457	3	5	1	1	0.149838816	0.306384543	0.771278218	0.771278218	1	0	0	1	NA	NA	0	NA	NA	0	3	NA	1	1	0.0001337	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	105372556	A	G	ATXN7L1	CCDS47682.1	r.?	-	-	intronic	49	0	0	40	17	42.5	30	7	23.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.546606786	1.273303393	2	2.509859649	1.254929825	2	NA	NA	1	NA	NA	1	4	NA	1	1	6.07E-29	1	1.44E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	105429360	T	C	ALDH1L2	CCDS31891.1	r.?	-	-	intronic	53	0	0	53	8	15.1	38	2	5.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.357713288	3	2	2	1	1	0.642286712	1	3	NA	1	NA	0.357713288	NA	0.807809118	0.807809118	1	0.517912281	0.517912281	1	NA	NA	0	NA	NA	0	4	NA	1	1	2.83E-10	1	0.015598339	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	105451780	G	A	LIN28B	CCDS34504.1	r.?	-	-	intronic	59	0	0	31	18	58.1	45	10	22.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.319361277	1.159680639	2	1.947368421	0.973684211	2	NA	NA	1	NA	NA	1	4	NA	1	1	7.40E-34	1	2.66E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	97920571	G	T	AL445885.1	ENST00000499910	r.?	-	-	upstream	63	0	0	27	9	33.3	29	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.149838816	5.306384543	3	5	0	0	0.850161184	0.693615457	3	5	1	1	0.149838816	0.306384543	1.712237643	1.712237643	1	0	0	1	NA	NA	0	NA	NA	0	4	NA	1	1	8.44E-15	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	105566796	C	G	-	-	-	-	-	-	64	0	0	45	7	15.6	37	7	18.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	0.778754491	0.778754491	1	2.224894737	1.112447368	2	NA	NA	0	NA	NA	1	4	NA	1	1	0.000000003	1	7.05E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	105606034	T	C	-	-	-	-	-	-	45	1	2.2	61	23	37.7	39	7	17.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.25899002	1.12949501	2	1.928175439	1.928175439	1	NA	NA	1	NA	NA	1	4	NA	0.201934322	1	3.73E-37	1	1.04E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	105645399	G	A	-	-	-	-	-	-	18	0	0	38	15	39.5	5	1	20	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.971846307	0.985923154	2	1.878584208	1.878584208	1	NA	NA	1	NA	NA	0	4	NA	1	1	4.24E-25	1	0.024751247	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	105775827	A	G	-	-	-	-	-	-	50	0	0	41	11	26.8	41	3	7.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	1.432767871	1.432767871	1	0.859350877	0.859350877	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.34E-16	1	0.001155993	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	105791860	C	A	-	-	-	-	-	-	61	0	0	47	11	23.4	30	3	10	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.402131737	1.402131737	1	1.077192982	1.077192982	1	NA	NA	1	NA	NA	1	4	NA	1	1	7.21E-16	1	0.000458697	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	105791951	A	T	-	-	-	-	-	-	34	0	0	59	7	11.9	26	0	0	298	0	0	426	18	4.2	384	0	0	1	TRUE	FALSE	4.128496294	4	2	2	2	2	0.871503706	1	3	NA	2	NA	0.128496294	NA	0.728340959	0.728340959	1	0	0	1	0.257061515	0.257061515	1	0	NA	0	3	NA	1	1	2.12E-08	1.28E-11	1	1	YES	1_1	0_0	somatic	custom.pulldown.HiSeq
PD9852b	14	105833019	C	T	PACS2	CCDS45178.1	r.?	-	-	intronic	13	0	0	32	16	50	11	4	36.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.532307329	4	4	3	0	1	0.467692671	1	4	NA	1	NA	0.532307329	NA	3.262161648	0.940729747	3.467692671	3.920982456	1.306994152	3	NA	NA	0	NA	NA	0	4	NA	1	1	8.51E-29	1	0.000000201	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	105889032	T	C	-	-	-	-	-	-	48	0	0	48	16	33.3	22	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.357713288	3	2	2	1	1	0.642286712	1	3	NA	1	NA	0.357713288	NA	1.781459842	0.890729921	2	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	2.96E-25	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	105922352	T	A	-	-	-	-	-	-	61	0	0	58	15	25.9	44	3	6.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.292932136	1.292932136	1	0.638718631	0.638718631	1	NA	NA	1	NA	NA	0	4	NA	1	1	7.42E-22	1	0.00142027	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	20435881	A	G	ENSG00000215407	ENST00000400226	r.?	-	-	intronic	93	0	0	121	8	6.6	68	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	6.403731855	5	4	4	2	1	0.596268145	1	5	NA	2	NA	0.403731855	NA	0.554119356	1.372493525	0.403731855	0	NA	0	NA	NA	0	NA	NA	0	NA	NA	1	1	0.000000213	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	105930416	G	T	-	-	-	-	-	-	56	0	0	32	13	40.6	30	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	1.620758483	1.620758483	1	0	0	1	NA	NA	0	NA	NA	1	4	NA	1	1	3.88E-22	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	105939811	A	T	-	-	-	-	-	-	53	0	0	43	5	11.6	22	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	0.579073852	0.579073852	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	0.00000257	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	106011826	G	T	-	-	-	-	-	-	71	0	0	44	8	18.2	30	2	6.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	0.908546906	0.908546906	1	0.788719298	0.788719298	1	NA	NA	0	NA	NA	1	4	NA	1	1	5.90E-11	1	0.009909649	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	106092872	A	G	-	-	-	-	-	-	46	0	0	41	8	19.5	46	4	8.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0.973443114	0.973443114	1	0.817184131	0.817184131	1	NA	NA	1	NA	NA	0	4	NA	1	1	3.22E-11	1	0.0000862	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	106170304	C	T	-	-	-	-	-	-	46	0	0	16	10	62.5	18	5	27.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.49500998	1.24750499	2	2.438596491	1.219298246	2	NA	NA	1	NA	NA	1	4	NA	1	1	7.61E-20	1	2.54E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	106178587	C	A	-	-	-	-	-	-	56	0	0	26	8	30.8	28	4	14.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	1.229540918	1.229540918	1	1.540385965	1.540385965	1	NA	NA	0	NA	NA	1	4	NA	1	1	5.63E-13	1	0.0000116	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	106218990	G	C	-	-	-	-	-	-	39	0	0	39	19	48.7	31	3	9.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	2.431111776	1.215555888	2	0.881278296	0.881278296	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.20E-33	1	0.000505952	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	106224188	G	A	AC018802.1	ENST00000515044	r.?	-	-	intronic	56	0	0	54	19	35.2	32	4	12.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.128496294	4	2	2	2	2	0.871503706	1	3	NA	2	NA	0.128496294	NA	2.154420316	1.012179501	2.128496294	1.346491228	1.346491228	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.97E-30	1	0.0000201	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	106273945	A	G	-	-	-	-	-	-	53	0	0	51	14	27.5	41	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.372804391	1.372804391	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	6.64E-21	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	106281310	G	A	-	-	-	-	-	-	42	0	0	61	19	31.1	42	6	14.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.863516966	0.931758483	2	1.540385965	1.540385965	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.64E-29	1	7.02E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	106312840	G	A	PPA2	CCDS3667.1	r.?	-	-	intronic	47	0	0	52	10	19.2	34	6	17.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	0.958467066	0.958467066	1	1.599020412	1.599020412	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.28E-13	1	1.86E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	106339254	A	G	-	-	-	-	-	-	53	0	0	51	14	27.5	35	8	22.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.647804391	0.823902196	2	2.46677193	1.233385965	2	NA	NA	1	NA	NA	1	4	NA	1	1	6.64E-21	1	8.15E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	106382705	T	G	-	-	-	-	-	-	42	0	0	25	3	12	19	1	5.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.357713288	3	2	2	1	1	0.642286712	1	3	NA	1	NA	0.357713288	NA	0.641967511	0.641967511	1	0.517912281	0.517912281	1	NA	NA	1	NA	NA	0	4	NA	1	1	0.00026475	1	0.090843738	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	106392154	G	C	-	-	-	-	-	-	61	0	0	37	8	21.6	32	10	31.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	0.862275449	0.862275449	1	3.360842105	1.120280702	3	NA	NA	0	NA	NA	1	4	NA	1	1	1.33E-11	1	5.70E-16	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	106392190	G	A	-	-	-	-	-	-	61	0	0	36	10	27.8	27	10	37	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	1.109780439	1.109780439	1	3.985614035	1.328538012	3	NA	NA	0	NA	NA	1	4	NA	1	1	2.21E-15	1	7.62E-17	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	22318213	T	C	ENSG00000232405	ENST00000429718	r.?	-	-	downstream	39	0	0	66	13	19.7	40	6	15	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6.403731855	5	4	4	2	1	0.596268145	1	5	NA	2	NA	0.403731855	NA	1.653962321	0.826981161	2	1.765789474	1.765789474	1	NA	NA	0	NA	NA	0	4	NA	1	1	1.95E-17	1	5.18E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	106401119	C	T	-	-	-	-	-	-	41	0	0	28	14	50	22	6	27.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.996007984	0.998003992	2	2.394736842	1.197368421	2	NA	NA	1	NA	NA	1	4	NA	1	1	2.29E-25	1	1.09E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	106478785	G	A	-	-	-	-	-	-	40	0	0	32	7	21.9	22	2	9.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	0.874251497	0.874251497	1	0.980245614	0.980245614	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.36E-10	1	0.005403392	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	106482999	T	G	NCK2	CCDS33266.1	r.?	-	-	intronic	23	0	0	49	8	16.3	33	3	9.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.128496294	4	2	2	2	2	0.871503706	1	3	NA	2	NA	0.128496294	NA	0.997643499	0.997643499	1	0.980245614	0.980245614	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.47E-10	1	0.000609557	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	106494908	G	A	-	-	-	-	-	-	46	0	0	49	10	20.4	32	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.222371257	1.222371257	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	6.72E-14	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	106508052	G	A	-	-	-	-	-	-	48	0	0	35	12	34.3	34	5	14.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	1.833729029	0.916864514	2	1.730473684	1.730473684	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.83E-19	1	0.000000771	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	106520521	G	A	-	-	-	-	-	-	42	0	0	37	8	21.6	25	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	0.862275449	0.862275449	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	1.33E-11	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	106555450	T	A	GUCY1A2	CCDS8335.1	r.?	-	-	downstream	64	0	0	52	14	26.9	34	3	8.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5	5.491323809	4	4	1	1	1	0.508676191	NA	5	NA	1	NA	0.491323809	1.880852295	0.940426148	2	1.07916632	1.07916632	1	NA	NA	1	NA	NA	0	4	NA	1	1	9.04E-21	1	0.000666058	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	106562264	C	T	-	-	-	-	-	-	39	0	0	40	17	42.5	37	4	10.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.128496294	4	2	2	2	2	0.871503706	1	3	NA	2	NA	0.128496294	NA	2.601217711	1.222091727	2.128496294	1.163368421	1.163368421	1	NA	NA	1	NA	NA	1	4	NA	1	1	6.07E-29	1	0.0000362	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	106632452	T	G	-	-	-	-	-	-	56	0	0	26	4	15.4	19	2	10.5	0	0	NA	0	0	NA	1	1	100	0.01	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.614770459	0.614770459	1	0.921052632	0.921052632	1	NA	NA	1	8.771929825	8.771929825	1	4	NA	1	1	0.00000856	1	0.004039874	0.005	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	106671327	A	G	-	-	-	-	-	-	58	0	0	61	19	31.1	42	8	19	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.863516966	0.931758483	2	2.046666667	1.023333333	2	NA	NA	1	NA	NA	1	4	NA	1	1	4.64E-29	1	3.96E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	106738399	C	T	-	-	-	-	-	-	36	0	0	23	11	47.8	22	5	22.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1.474974183	2	1	2	0	0	0.525025817	1	2	NA	0	NA	0.474974183	NA	1.657221292	1.123559525	1.474974183	1.99122807	1.99122807	1	NA	NA	0	NA	NA	1	4	NA	1	1	6.25E-20	1	7.67E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	106762146	G	T	GUCY1A2	CCDS8335.1	r.?	-	-	intronic	62	0	0	56	13	23.2	26	2	7.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5	5.491323809	4	4	1	1	1	0.508676191	NA	5	NA	1	NA	0.491323809	1.622147705	0.811073852	2	0.94427053	0.94427053	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.89E-18	1	0.007502227	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	106770567	C	A	GSTCD	CCDS43257.1	r.?	-	-	downstream	50	0	0	48	13	27.1	22	1	4.5	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	1.352836327	1.352836327	1	0.408840446	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	2.00E-19	1	0.104413009	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	106808195	G	T	ZFPM2	CCDS47908.1	r.?	-	-	intronic	48	0	0	35	11	31.4	43	5	11.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.567493014	1.567493014	1	1.089578841	1.089578841	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.82E-17	1	0.00000257	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	106877721	A	C	-	-	-	-	-	-	45	0	0	40	4	10	33	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	0.534614877	0.534614877	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	0.0000495	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	59671984	G	C	-	-	-	-	-	-	47	0	0	67	22	32.8	33	9	27.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.965381238	0.982690619	2	2.940736842	1.470368421	2	NA	NA	1	NA	NA	1	4	NA	1	1	5.21E-34	1	6.76E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	106963040	C	T	-	-	-	-	-	-	17	0	0	38	7	18.4	8	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	0.734530938	0.734530938	1	0	0	1	NA	NA	0	NA	NA	1	4	NA	1	1	8.61E-10	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	106999881	A	G	-	-	-	-	-	-	60	0	0	56	10	17.9	40	3	7.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5	5.491323809	4	4	1	1	1	0.508676191	NA	5	NA	1	NA	0.491323809	1.251570858	1.251570858	1	0.919744022	0.919744022	1	NA	NA	0	NA	NA	0	4	NA	1	1	2.82E-13	1	0.001075403	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	107052854	G	A	RTN4IP1	CCDS5056.1	r.?	-	-	intronic	24	0	0	21	8	38.1	23	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.520958084	1.520958084	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	7.50E-14	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	107106145	T	G	-	-	-	-	-	-	41	0	0	31	14	45.2	24	6	25	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.804391218	0.902195609	2	2.192982456	1.096491228	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.49E-24	1	1.95E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	107180003	A	G	-	-	-	-	-	-	44	0	0	33	20	60.6	23	7	30.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.419161677	1.209580838	2	2.666666667	1.333333333	2	NA	NA	1	NA	NA	1	4	NA	1	1	5.14E-38	1	1.79E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	107246290	A	G	-	-	-	-	-	-	65	0	0	57	17	29.8	45	9	20	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.785620758	0.892810379	2	2.154385965	1.077192982	2	NA	NA	1	NA	NA	1	4	NA	1	1	8.82E-26	1	1.47E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	60039367	G	A	-	-	-	-	-	-	41	0	0	65	22	33.8	44	4	9.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.025301397	1.012650699	2	0.980245614	0.980245614	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.36E-34	1	0.0000723	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	107454613	C	A	-	-	-	-	-	-	32	1	3.1	20	11	55	17	4	23.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	3.295608782	1.647804391	2	2.531403509	2.531403509	1	NA	NA	1	NA	NA	1	4	NA	0.14819814	1	7.87E-21	1	0.00000141	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	107533000	A	G	BBX	CCDS2950.1	r.?	-	-	downstream	42	0	0	41	10	24.4	27	3	11.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	1.3044603	1.3044603	1	1.306684211	1.306684211	1	NA	NA	0	NA	NA	1	4	NA	1	1	9.51E-15	1	0.000334187	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	107568295	C	T	COL4A6	CCDS14542.1	r.?	-	-	intronic	53	0	0	25	11	44	38	6	15.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1.474974183	2	1	2	0	0	0.525025817	1	2	NA	0	NA	0.474974183	NA	1.525475667	1.525475667	1	1.385964912	1.385964912	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.04E-19	1	3.76E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	107601427	T	A	-	-	-	-	-	-	45	0	0	43	19	44.2	35	13	37.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.357713288	3	2	2	1	1	0.642286712	1	3	NA	1	NA	0.357713288	NA	2.364580331	1.002912586	2.357713288	3.625385965	1.812692982	2	NA	NA	1	NA	NA	0	4	NA	1	1	1.36E-32	1	1.63E-21	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	23858003	T	A	-	-	-	-	-	-	40	0	0	62	18	29	30	6	20	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.860744679	5	4	4	0	1	0.139255321	1	4	NA	1	NA	0.860744679	NA	1.987300588	0.993650294	2	2.354385965	1.177192982	2	NA	NA	0	NA	NA	1	4	NA	1	1	5.72E-27	1	8.37E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	107654826	G	C	-	-	-	-	-	-	54	0	0	49	4	8.2	36	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.128496294	4	2	2	2	2	0.871503706	1	3	NA	2	NA	0.128496294	NA	0.501882005	0.501882005	1	0	0	1	NA	NA	0	NA	NA	0	3	NA	1	1	0.000110643	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	107710584	T	C	LAMB4	CCDS34732.1	r.?	-	-	intronic	57	0	0	37	4	10.8	35	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.647137725	0.647137725	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.0000362	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	107772805	C	G	-	-	-	-	-	-	41	0	0	33	9	27.3	31	2	6.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	1.362820359	1.362820359	1	0.590547311	0.590547311	1	NA	NA	1	NA	NA	0	4	NA	1	1	6.76E-14	1	0.010558179	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	107785062	G	T	-	-	-	-	-	-	57	1	1.8	44	12	27.3	34	5	14.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.128496294	4	2	2	2	2	0.871503706	1	3	NA	2	NA	0.128496294	NA	1.670899847	0.835449924	2	1.583473684	1.583473684	1	NA	NA	1	NA	NA	1	4	NA	0.248523156	1	4.44E-18	1	0.000000771	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	108001923	C	T	-	-	-	-	-	-	56	0	0	58	22	37.9	30	6	20	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.512974052	0.756487026	2	1.754385965	1.754385965	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.13E-35	1	8.37E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	108028941	C	G	FAM155A	CCDS32006.1	r.?	-	-	intronic	48	0	0	32	10	31.2	29	2	6.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.869508982	0.934754491	2	0.743263158	0.743263158	1	NA	NA	1	NA	NA	1	4	NA	1	1	5.70E-16	1	0.009279585	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	108090918	C	T	-	-	-	-	-	-	61	0	0	50	32	64	47	16	34	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.55489022	1.27744511	2	2.98245614	1.49122807	2	NA	NA	1	NA	NA	1	4	NA	1	1	3.85E-61	1	1.98E-25	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	108150883	A	G	-	-	-	-	-	-	48	1	2.1	22	6	27.3	36	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.089820359	1.089820359	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	0.213845552	1	1.09E-09	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	61624394	A	T	-	-	-	-	-	-	57	0	0	61	18	29.5	36	5	13.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.767644711	0.883822355	2	1.497298246	1.497298246	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.08E-27	1	0.00000104	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	108312019	T	C	ANGPT1	CCDS6306.1	r.?	-	-	intronic	30	0	0	20	5	25	11	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.248003992	1.248003992	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	4.55E-08	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	108385318	C	G	FER	CCDS4098.1	r.?	-	-	intronic	53	0	0	37	8	21.6	29	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.862275449	0.862275449	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	1.33E-11	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	108461470	G	A	SORCS1	CCDS7559.1	r.?	-	-	intronic	65	0	0	31	6	19.4	41	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.774451098	0.774451098	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	1.03E-08	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	31774286	C	A	OTUD7A	CCDS10026.1	r.4085g>u	c.?	p.?	3'UTR variant	33	0	0	47	7	14.9	30	2	6.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3.455620428	2	2	1	1	1	0.544379572	NA	3	NA	1	NA	0.455620428	0.743810379	0.743810379	1	0.685245867	0.685245867	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.12E-09	1	0.009909649	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	108594226	G	A	SORCS1	CCDS7559.1	r.?	-	-	intronic	44	0	0	54	6	11.1	25	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.443113772	0.443113772	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.000000329	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	108655607	G	C	-	-	-	-	-	-	48	0	0	44	6	13.6	29	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.357713288	3	2	2	1	1	0.642286712	1	3	NA	1	NA	0.357713288	NA	0.727563179	0.727563179	1	0	0	1	NA	NA	1	NA	NA	0	3	NA	1	1	9.37E-08	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	108659394	A	G	LACE1	CCDS5067.1	r.?	-	-	intronic	53	0	0	39	21	53.8	41	8	19.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.147704591	1.073852295	2	1.710526316	1.710526316	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.73E-38	1	3.22E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	108687770	C	T	-	-	-	-	-	-	53	0	0	32	13	40.6	32	1	3.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	1.620758483	1.620758483	1	0.333929825	0.333929825	1	NA	NA	0	NA	NA	1	4	NA	1	1	3.88E-22	1	0.14819814	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	108699112	T	A	PJA2	CCDS4099.1	r.?	-	-	intronic	55	0	0	32	16	50	25	7	28	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.996007984	0.998003992	2	2.456140351	1.228070175	2	NA	NA	1	NA	NA	1	4	NA	1	1	8.51E-29	1	3.47E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	108725874	A	T	-	-	-	-	-	-	48	0	0	54	10	18.5	37	10	27	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.108522954	1.108522954	1	2.908421053	1.454210526	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.91E-13	1	3.01E-15	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	108743681	G	A	-	-	-	-	-	-	46	0	0	55	19	34.5	35	2	5.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.128496294	4	2	2	2	2	0.871503706	1	3	NA	2	NA	0.128496294	NA	2.11157673	0.992050931	2.128496294	0.614	0.614	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.51E-30	1	0.013332991	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	66986747	A	T	PCDH9	CCDS9443.1	r.?	-	-	intronic	58	0	0	57	10	17.5	37	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.048602794	1.048602794	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	3.40E-13	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	108758566	C	G	-	-	-	-	-	-	42	0	0	21	9	42.9	21	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	1.71257485	1.71257485	1	0	0	1	NA	NA	0	NA	NA	1	4	NA	1	1	5.44E-16	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	108789424	C	T	SGMS2	CCDS3677.1	r.?	-	-	intronic	44	0	0	37	14	37.8	29	8	27.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	1.886982036	0.943491018	2	2.507554738	1.909189204	1.313413428	NA	NA	1	NA	NA	0	4	NA	1	1	3.35E-23	1	1.53E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	108809860	T	C	-	-	-	-	-	-	54	0	0	49	11	22.4	34	3	8.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.118211577	1.118211577	1	0.826577052	0.826577052	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.19E-15	1	0.000666058	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	108844494	C	A	-	-	-	-	-	-	61	0	0	60	12	20	46	6	13	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	1.069229754	1.069229754	1	1.530350877	1.530350877	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.74E-16	1	0.000000123	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	108856170	A	G	-	-	-	-	-	-	44	0	0	42	12	28.6	40	6	15	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1.474974183	2	1	2	0	0	0.525025817	1	2	NA	0	NA	0.474974183	NA	0.991559183	0.991559183	1	1.315789474	1.315789474	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.35E-18	1	5.18E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	108905044	T	G	-	-	-	-	-	-	45	0	0	38	7	18.4	33	1	3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.102530938	1.102530938	1	0.323157895	0.323157895	1	NA	NA	1	NA	NA	1	4	NA	1	1	8.61E-10	1	0.15245715	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	108928107	G	A	-	-	-	-	-	-	42	0	0	24	9	37.5	28	9	32.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	2.004805789	1.002402895	2	3.778789474	1.259596491	3	NA	NA	0	NA	NA	1	4	NA	1	1	2.39E-15	1	1.24E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	108992402	A	G	-	-	-	-	-	-	44	0	0	28	7	25	38	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	0.998003992	0.998003992	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	8.44E-11	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	109001198	T	A	RSPO2	CCDS6307.1	r.?	-	-	intronic	56	0	0	55	25	45.5	38	10	26.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	2.271367265	1.135683633	2	2.470338234	1.235169117	2	NA	NA	1	NA	NA	0	4	NA	1	1	7.96E-43	1	4.06E-15	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	109013658	G	A	SELPLG	CCDS31895.1	r.?	-	-	downstream	38	0	0	36	9	25	20	3	15	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.357713288	3	2	2	1	1	0.642286712	1	3	NA	1	NA	0.357713288	NA	1.337432314	1.337432314	1	1.465789474	1.465789474	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.63E-13	1	0.0001337	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	71736389	G	A	-	-	-	-	-	-	36	0	0	43	16	37.2	23	4	17.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.22902994	1.11451497	2	1.874315789	1.874315789	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.56E-26	1	0.00000513	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	109103012	G	A	-	-	-	-	-	-	44	0	0	26	8	30.8	31	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	1.229540918	1.229540918	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	5.63E-13	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	109229957	C	T	-	-	-	-	-	-	51	0	0	56	6	10.7	38	2	5.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.641145709	0.641145709	1	0.570912281	0.570912281	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.000000409	1	0.015598339	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	109242442	T	C	EIF3E	CCDS6308.1	r.?	-	-	intronic	49	0	0	43	17	39.5	31	7	22.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.971846307	0.985923154	2	2.122800156	1.061400078	2	NA	NA	1	NA	NA	0	4	NA	1	1	2.84E-28	1	1.85E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	109253983	T	A	-	-	-	-	-	-	39	0	0	64	7	10.9	28	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5	5.491323809	4	4	1	1	1	0.508676191	NA	5	NA	1	NA	0.491323809	0.762129741	0.762129741	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	3.78E-08	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	109261707	C	G	-	-	-	-	-	-	51	0	0	44	11	25	26	2	7.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	1.248003992	1.248003992	1	0.69957143	0.69957143	1	NA	NA	1	NA	NA	0	4	NA	1	1	3.22E-16	1	0.007502227	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	109380259	G	A	AKNAD1	CCDS791.2	r.1718c>u	c.1449C>T	p.S483S	silent	52	0	0	31	11	35.5	33	8	24.2	144	0	0	212	71	33.5	226	52	23	9.88E-54	TRUE	TRUE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.772165669	0.886082834	2	2.848807018	0.949602339	3	1.672325349	0.836162675	2	2.70754386	0.90251462	3	4	3	1	1	3.77E-18	6.19E-107	4.85E-12	5.18E-69	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	11	109402784	A	G	-	-	-	-	-	-	50	0	0	57	14	24.6	30	6	20	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5	5.491323809	4	4	1	1	1	0.508676191	NA	5	NA	1	NA	0.491323809	1.720035928	0.860017964	2	2.452650727	0.984476895	2.491323809	NA	NA	1	NA	NA	1	4	NA	1	1	3.84E-20	1	8.37E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	109504230	C	A	-	-	-	-	-	-	48	0	0	46	6	13	32	4	12.5	180	0	0	341	60	17.6	434	93	21.4	1.35E-91	TRUE	TRUE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	0.69499934	0.69499934	1	1.471491228	1.471491228	1	0.940922184	0.940922184	1	2.519192982	0.839730994	3	4	3	1	1	0.000000123	9.63E-72	0.0000201	7.43E-119	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	3	109504241	C	A	-	-	-	-	-	-	44	0	0	52	7	13.5	29	4	13.8	195	1	0.5	356	60	16.9	437	89	20.4	1.26E-85	TRUE	TRUE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	0.721730084	0.721730084	1	1.624526316	1.624526316	1	0.903499142	0.903499142	1	2.401473684	0.800491228	3	4	3	1	0.623729002	8.58E-09	1.52E-70	0.0000134	1.15E-111	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	4	109524638	A	G	-	-	-	-	-	-	19	0	0	20	5	25	17	2	11.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	1.248003992	1.248003992	1	1.072070504	1.072070504	1	NA	NA	1	NA	NA	0	4	NA	1	1	4.55E-08	1	0.003234386	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	109528915	T	C	-	-	-	-	-	-	45	0	0	35	15	42.9	26	5	19.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.71257485	0.856287425	2	1.684210526	1.684210526	1	NA	NA	1	NA	NA	1	4	NA	1	1	9.02E-26	1	0.000000188	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	109592565	C	T	-	-	-	-	-	-	52	0	0	31	7	22.6	30	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	0.902195609	0.902195609	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	1.85E-10	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	39294045	C	A	-	-	-	-	-	-	40	0	0	52	10	19.2	31	1	3.2	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.598654474	2	1	1	1	1	0.401345526	NA	2	NA	1	NA	0.598654474	0.958467066	0.958467066	1	0.299858698	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	1.28E-13	1	0.143917729	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	109678767	C	T	-	-	-	-	-	-	58	0	0	45	8	17.8	41	2	4.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.066578842	1.066578842	1	0.527824561	0.527824561	1	NA	NA	1	NA	NA	1	4	NA	1	1	7.14E-11	1	0.018015855	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	109701404	G	A	MYO16	CCDS32008.1	r.?	-	-	intronic	37	0	0	45	13	28.9	38	5	13.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.731692615	0.865846307	2	1.421894737	1.421894737	1	NA	NA	1	NA	NA	1	4	NA	1	1	7.68E-20	1	0.00000137	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	109748226	G	A	-	-	-	-	-	-	54	0	0	38	8	21.1	36	1	2.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.264315369	1.264315369	1	0.301614035	0.301614035	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.67E-11	1	0.165106833	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	109762240	G	A	-	-	-	-	-	-	44	0	0	32	5	15.6	25	3	12	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0.778754491	0.778754491	1	1.127150525	1.127150525	1	NA	NA	1	NA	NA	0	4	NA	1	1	0.000000562	1	0.00026475	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	109778192	T	C	-	-	-	-	-	-	48	0	0	27	6	22.2	44	7	15.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.108227545	1.108227545	1	1.493474446	1.493474446	1	NA	NA	1	NA	NA	0	4	NA	1	1	4.23E-09	1	2.55E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	109820231	G	A	MYO16	CCDS32008.1	r.?	-	-	intronic	55	0	0	51	11	21.6	37	5	13.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.294275449	1.294275449	1	1.454210526	1.454210526	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.94E-15	1	0.00000119	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	87952242	C	T	-	-	-	-	-	-	64	0	0	64	8	12.5	36	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.749001996	0.749001996	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	1.35E-09	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	109852085	G	A	SORT1	CCDS798.1	r.?	-	-	downstream	57	1	1.8	49	20	40.8	32	6	18.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	2.036742515	1.018371257	2	2.213122807	1.106561404	2	NA	NA	0	NA	NA	1	4	NA	0.248523156	1	2.35E-33	1	1.27E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	109900432	T	C	-	-	-	-	-	-	50	0	0	51	9	17.6	54	6	11.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5	5.491323809	4	4	1	1	1	0.508676191	NA	5	NA	1	NA	0.491323809	1.23059481	1.23059481	1	1.361221153	1.361221153	1	NA	NA	1	NA	NA	0	4	NA	1	1	4.92E-12	1	0.000000329	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	109998885	C	G	ZC3H12C	CCDS44727.1	r.?	-	-	intronic	41	0	0	48	4	8.3	32	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5	5.491323809	4	4	1	1	1	0.508676191	NA	5	NA	1	NA	0.491323809	0.580337325	0.580337325	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	0.000102016	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	110032453	G	A	-	-	-	-	-	-	59	0	0	43	6	14	35	1	2.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	0.748460828	0.748460828	1	0.341385965	0.341385965	1	NA	NA	0	NA	NA	1	4	NA	1	1	8.13E-08	1	0.16091139	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	44860890	C	T	SPG11	CCDS10112.1	r.?	-	-	intronic	35	0	0	51	12	23.5	29	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3.293619843	2	2	1	1	1	0.706380157	NA	3	NA	1	NA	0.293619843	1.173123752	1.173123752	1	0	0	1	NA	NA	0	NA	NA	0	3	NA	1	1	3.24E-17	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	110187424	C	A	PAK3	CCDS14554.1	r.?	-	-	upstream	24	0	0	17	7	41.2	7	1	14.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1.474974183	2	1	2	0	0	0.525025817	1	2	NA	0	NA	0.474974183	NA	1.428399942	1.428399942	1	1.254385965	1.254385965	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.45E-12	1	0.034479353	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	110201366	T	C	-	-	-	-	-	-	27	0	0	25	8	32	31	5	16.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.91744511	0.958722555	2	1.734280702	1.734280702	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.92E-13	1	0.000000476	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	110221677	C	A	-	-	-	-	-	-	50	0	0	32	4	12.5	29	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.499001996	0.499001996	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.0000201	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	110229917	C	T	-	-	-	-	-	-	54	0	0	41	19	46.3	39	8	20.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.848303393	0.924151697	2	1.798245614	1.798245614	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.20E-33	1	2.09E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	110235759	T	C	-	-	-	-	-	-	37	0	0	46	6	13	28	6	21.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0.648962076	0.648962076	1	2.010085103	2.010085103	1	NA	NA	1	NA	NA	0	4	NA	1	1	0.000000123	1	5.36E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	110243276	A	G	TRPV4	CCDS9134.1	r.?	-	-	intronic	25	0	0	33	5	15.2	30	0	0	215	0	0	11	0	0	28	0	0	1	TRUE	TRUE	3.357713288	3	2	2	1	1	0.642286712	1	3	NA	1	NA	0.357713288	NA	0.813158847	0.813158847	1	0	0	1	0	0	1	0	0	1	3	NA	1	1	0.00000066	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	110253608	T	A	-	-	-	-	-	-	61	0	0	42	16	38.1	29	9	31	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	2.036882682	1.018441341	2	3.649298246	1.216432749	3	NA	NA	0	NA	NA	1	4	NA	1	1	2.25E-26	1	1.79E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	110365274	A	C	PAK3	CCDS48153.1	r.?	-	-	intronic	29	0	0	24	11	45.8	28	8	28.6	2	0	0	0	0	NA	0	0	NA	1	TRUE	FALSE	1.474974183	2	1	2	0	0	0.525025817	1	2	NA	0	NA	0.474974183	NA	1.587881489	1.587881489	1	2.50877193	1.254385965	2	NA	NA	0	NA	NA	1	4	NA	1	1	1.15E-19	1	1.11E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	110369370	G	A	SEC24B	CCDS47124.1	r.?	-	-	intronic	49	0	0	43	8	18.6	31	5	16.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	0.92851497	0.92851497	1	1.462740264	1.462740264	1	NA	NA	1	NA	NA	0	4	NA	1	1	4.85E-11	1	0.000000476	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	110397612	C	T	-	-	-	-	-	-	19	0	0	46	6	13	25	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.778962076	0.778962076	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.000000123	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	110401804	C	T	-	-	-	-	-	-	39	0	0	64	41	64.1	40	14	35	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5	5.491323809	4	4	1	1	1	0.508676191	NA	5	NA	1	NA	0.491323809	4.481882236	1.120470559	4	4.292138772	0.955651152	4.491323809	NA	NA	1	NA	NA	0	4	NA	1	1	5.96E-78	1	1.25E-22	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	45118495	G	C	-	-	-	-	-	-	33	0	0	29	18	62.1	11	2	18.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3.293619843	2	2	1	1	1	0.706380157	NA	3	NA	1	NA	0.293619843	3.100041916	1.550020958	2	1.831930039	1.831930039	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.25E-34	1	0.001334363	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	110436957	A	G	PKHD1L1	CCDS47911.1	r.?	-	-	intronic	61	0	0	44	5	11.4	26	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0.56908982	0.56908982	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	0.00000288	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	110509925	A	G	-	-	-	-	-	-	45	0	0	23	4	17.4	29	1	3.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	0.694610778	0.694610778	1	0.366245614	0.366245614	1	NA	NA	0	NA	NA	1	4	NA	1	1	0.00000513	1	0.135292269	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	110568684	A	C	ARHGAP20	CCDS31673.1	r.?	-	-	intronic	40	0	0	54	6	11.1	42	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5	5.491323809	4	4	1	1	1	0.508676191	NA	5	NA	1	NA	0.491323809	0.776113772	0.776113772	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.000000329	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	110574134	C	G	ARHGAP20	CCDS31673.1	r.?	-	-	intronic	45	0	0	53	11	20.8	34	5	14.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5	5.491323809	4	4	1	1	1	0.508676191	NA	5	NA	1	NA	0.491323809	1.454339321	1.454339321	1	1.802698284	1.802698284	1	NA	NA	0	NA	NA	1	4	NA	1	1	3.07E-15	1	0.000000771	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	51030518	G	T	ENSG00000138600	CCDS10138.1	r.?	-	-	intronic	22	0	0	30	8	26.7	27	5	18.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3.293619843	2	2	1	1	1	0.706380157	NA	3	NA	1	NA	0.293619843	1.332868263	1.332868263	1	1.862126688	1.862126688	1	NA	NA	1	NA	NA	0	4	NA	1	1	2.07E-12	1	0.00000023	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	110835311	C	T	EGF	CCDS3689.1	r.?	-	-	intronic	44	0	0	62	19	30.6	52	6	11.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	1.527556886	0.763778443	2	1.044814474	1.044814474	1	NA	NA	1	NA	NA	0	4	NA	1	1	6.66E-29	1	0.000000261	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	110840372	G	A	-	-	-	-	-	-	46	0	0	38	8	21.1	32	2	6.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.053315369	1.053315369	1	0.729859649	0.729859649	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.67E-11	1	0.011224977	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	110902699	G	T	IMMP2L	CCDS5753.1	r.?	-	-	intronic	66	0	0	48	16	33.3	36	3	8.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.995341317	0.997670659	2	0.894070175	0.894070175	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.96E-25	1	0.000788827	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	110934385	A	G	ALG13	CCDS14559.1	r.?	-	-	downstream	42	0	0	27	8	29.6	32	7	21.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1.474974183	2	1	2	0	0	0.525025817	1	2	NA	0	NA	0.474974183	NA	1.026229085	1.026229085	1	1.921052632	1.921052632	1	NA	NA	0	NA	NA	1	4	NA	1	1	7.97E-13	1	2.36E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	111003883	C	T	COL4A2	CCDS41907.1	r.?	-	-	intronic	41	0	0	60	6	10	36	0	0	0	0	NA	1	0	0	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.599201597	0.599201597	1	0	0	1	0	0	1	NA	NA	1	3	NA	1	1	0.000000621	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	54456539	G	T	UNC13C	CCDS45264.1	r.?	-	-	intronic	58	0	0	49	11	22.4	25	0	0	57	0	0	596	108	18.1	603	45	7.5	8.44E-25	TRUE	TRUE	3	3.293619843	2	2	1	1	1	0.706380157	NA	3	NA	1	NA	0.293619843	1.118211577	1.118211577	1	0	0	1	0.90355489	0.90355489	1	0.754916225	0.754916225	1	3	3	1	1	1.19E-15	3.56E-129	1	3.73E-37	YES	1_1	0_1	somatic	custom.pulldown.HiSeq
PD9852b	12	111151323	G	A	-	-	-	-	-	-	35	0	0	55	12	21.8	51	5	9.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.357713288	3	2	2	1	1	0.642286712	1	3	NA	1	NA	0.357713288	NA	1.166240978	1.166240978	1	0.957649123	0.957649123	1	NA	NA	0	NA	NA	1	4	NA	1	1	8.78E-17	1	0.00000606	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	111193612	T	G	IMMP2L	CCDS5753.1	r.?	-	-	intronic	58	0	0	51	9	17.6	29	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.05459481	1.05459481	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	4.92E-12	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	111291416	A	G	CD96	CCDS2959.1	r.?	-	-	intronic	58	0	0	57	15	26.3	45	10	22.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	1.406037127	1.406037127	1	2.613368421	0.871122807	3	NA	NA	0	NA	NA	1	4	NA	1	1	5.53E-22	1	2.66E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	104959252	G	A	-	-	-	-	-	-	49	0	0	43	8	18.6	31	1	3.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.11451497	1.11451497	1	0.344701754	0.344701754	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.85E-11	1	0.143917729	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	111311128	A	C	-	-	-	-	-	-	57	0	0	38	11	28.9	35	11	31.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	1.153692615	1.153692615	1	3.382385965	1.127461988	3	NA	NA	0	NA	NA	1	4	NA	1	1	5.19E-17	1	1.82E-17	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	111346114	G	A	RPF2	CCDS5088.1	r.?	-	-	intronic	35	0	0	23	5	21.7	26	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.866267465	0.866267465	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	9.75E-08	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	54546194	C	T	UNC13C	CCDS45264.1	r.?	-	-	intronic	47	0	0	51	11	21.6	48	2	4.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3.293619843	2	2	1	1	1	0.706380157	NA	3	NA	1	NA	0.293619843	1.078275449	1.078275449	1	0.422753086	0.422753086	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.94E-15	1	0.024220359	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	111368525	C	T	DOCK4	CCDS47688.1	r.5963g>a	c.5706G>A	p.P1902P	silent	14	0	0	36	9	25	11	1	9.1	151	0	0	68	21	30.9	58	12	20.7	5.82E-13	TRUE	TRUE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.498003992	1.498003992	1	0.980245614	0.980245614	1	1.851532934	0.925766467	2	2.229789474	1.114894737	2	4	3	1	1	1.63E-13	7.15E-32	0.05364542	1.76E-16	YES	1_1	0_1	somatic	custom.pulldown.HiSeq
PD9852b	15	56601559	G	T	-	-	-	-	-	-	55	0	0	42	9	21.4	41	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3.293619843	2	2	1	1	1	0.706380157	NA	3	NA	1	NA	0.293619843	1.068291417	1.068291417	1	0	0	1	NA	NA	0	NA	NA	0	3	NA	1	1	7.51E-13	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	111407956	G	A	LAYN	CCDS31676.1	r.?	-	-	upstream	57	0	0	68	22	32.4	42	9	21.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5	5.491323809	4	4	1	1	1	0.508676191	NA	5	NA	1	NA	0.491323809	2.265413174	1.132706587	2	2.624336277	1.053390277	2.491323809	NA	NA	1	NA	NA	0	4	NA	1	1	7.67E-34	1	7.51E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	111409813	A	G	LAYN	CCDS31676.1	r.?	-	-	upstream	56	0	0	51	9	17.6	35	1	2.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5	5.491323809	4	4	1	1	1	0.508676191	NA	5	NA	1	NA	0.491323809	1.23059481	1.23059481	1	0.355634355	0.355634355	1	NA	NA	0	NA	NA	0	4	NA	1	1	4.92E-12	1	0.16091139	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	111557117	C	A	-	-	-	-	-	-	51	0	0	50	7	14	49	0	0	75	0	0	298	14	4.7	282	0	0	1	FALSE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0.698882236	0.698882236	1	0	NA	0	0.23462475	0.23462475	1	0	NA	0	NA	NA	1	1	6.46E-09	5.95E-10	1	1	YES	1_1	0_0	somatic	custom.pulldown.HiSeq
PD9852b	4	111557912	T	G	PITX2	CCDS3692.1	r.?	-	-	intronic	20	0	0	38	9	23.7	21	1	4.8	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	1.183107784	1.183107784	1	0.436096476	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	2.79E-13	1	0.099912572	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	111589851	C	T	PHLDB2	CCDS46886.1	r.?	-	-	intronic	47	0	0	51	10	19.6	29	4	13.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	1.047845159	1.047845159	1	1.624526316	1.624526316	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.04E-13	1	0.0000134	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	111652939	A	G	REV3L	CCDS5091.2	r.8429u>c	c.7974T>C	p.D2658D	silent	30	0	0	30	7	23.3	31	4	12.9	128	0	0	125	23	18.4	119	10	8.4	3.95E-07	TRUE	TRUE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.930139721	0.930139721	1	1.131578947	1.131578947	1	0.734530938	0.734530938	1	0.736842105	0.736842105	1	4	3	1	1	1.44E-10	5.53E-29	0.0000177	6.33E-10	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	5	111672597	C	T	EPB41L4A	CCDS43350.1	r.?	-	-	intronic	52	0	0	32	13	40.6	34	4	11.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.620758483	0.810379242	2	1.035087719	1.035087719	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.88E-22	1	0.0000257	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	111735815	G	T	CTNNAL1	CCDS6775.1	r.?	-	-	intronic	31	0	0	21	4	19	18	8	44.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	0.758483034	0.758483034	1	4.782736842	1.594245614	3	NA	NA	0	NA	NA	1	4	NA	1	1	0.00000349	1	1.63E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	111753928	A	T	-	-	-	-	-	-	51	0	0	38	12	31.6	31	7	22.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.893477046	0.946738523	2	2.43445614	1.21722807	2	NA	NA	1	NA	NA	1	4	NA	1	1	5.86E-19	1	1.85E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	111808656	A	T	DOCK4	CCDS47688.1	r.?	-	-	intronic	48	0	0	33	9	27.3	35	5	14.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.635820359	1.635820359	1	1.540385965	1.540385965	1	NA	NA	1	NA	NA	1	4	NA	1	1	6.76E-14	1	0.000000895	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	111843703	C	G	SH2B3	CCDS9153.1	r.?	-	-	upstream	11	0	0	25	6	24	3	1	33.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.357713288	3	2	2	1	1	0.642286712	1	3	NA	1	NA	0.357713288	NA	1.283935022	1.283935022	1	3.254052632	3.254052632	1	NA	NA	0	NA	NA	0	4	NA	1	1	2.55E-09	1	0.014925125	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	111846529	C	A	DOCK4	CCDS47688.1	r.?	-	-	upstream	21	0	0	36	10	27.8	12	4	33.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.665780439	1.665780439	1	3.587052632	1.793526316	2	NA	NA	1	NA	NA	1	4	NA	1	1	2.21E-15	1	0.0000003	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	111917664	G	T	C9orf4	CCDS35098.1	r.?	-	-	intronic	46	0	0	36	7	19.4	26	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	0.774451098	0.774451098	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	5.74E-10	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	111939065	G	A	-	-	-	-	-	-	53	0	0	35	14	40	30	10	33.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.596806387	0.798403194	2	2.921052632	1.460526316	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.28E-23	1	2.68E-16	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	112018745	G	T	MXI1	CCDS7563.1	r.?	-	-	intronic	59	0	0	40	10	25	29	1	3.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.998003992	0.998003992	1	0.298245614	0.298245614	1	NA	NA	1	NA	NA	1	4	NA	1	1	7.22E-15	1	0.135292269	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	112054529	G	C	-	-	-	-	-	-	17	0	0	47	14	29.8	28	3	10.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.785620758	0.892810379	2	1.152596491	1.152596491	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.79E-21	1	0.000372895	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	112155267	C	G	-	-	-	-	-	-	39	0	0	43	14	32.6	38	6	15.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.953397206	0.976698603	2	1.701964912	1.701964912	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.18E-22	1	3.76E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	112188475	G	T	PTPN3	CCDS48001.1	r.?	-	-	intronic	51	0	0	25	7	28	26	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	1.117764471	1.117764471	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	3.47E-11	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	112202098	C	G	BTLA	CCDS33819.1	r.?	-	-	intronic	29	0	0	32	10	31.2	40	4	10	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	1.667998417	1.667998417	1	1.177192982	1.177192982	1	NA	NA	0	NA	NA	1	4	NA	1	1	5.70E-16	1	0.0000495	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	112202412	C	T	-	-	-	-	-	-	57	0	0	48	10	20.8	30	4	13.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.038339321	1.038339321	1	1.249258499	1.249258499	1	NA	NA	1	NA	NA	0	4	NA	1	1	5.37E-14	1	0.0000154	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	112208804	G	T	ALDH2	CCDS9155.1	r.?	-	-	intronic	45	0	0	44	15	34.1	33	9	27.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.357713288	3	2	2	1	1	0.642286712	1	3	NA	1	NA	0.357713288	NA	1.824257676	0.912128838	2	2.667736842	1.333868421	2	NA	NA	1	NA	NA	1	4	NA	1	1	6.12E-24	1	6.76E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	112208805	A	T	ALDH2	CCDS9155.1	r.?	-	-	intronic	45	0	0	44	15	34.1	33	8	24.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.357713288	3	2	2	1	1	0.642286712	1	3	NA	1	NA	0.357713288	NA	1.824257676	0.912128838	2	2.364807018	1.182403509	2	NA	NA	1	NA	NA	0	4	NA	1	1	6.12E-24	1	4.85E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	112227599	G	T	AP002841.2	ENST00000504610	r.?	-	-	intronic	40	0	0	38	18	47.4	29	5	17.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5	5.491323809	4	4	1	1	1	0.508676191	NA	5	NA	1	NA	0.491323809	3.314215569	1.104738523	3	2.109279625	2.109279625	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.16E-31	1	0.000000336	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	112275007	G	T	ENSG00000204398	ENST00000375713	r.?	-	-	intronic	26	0	0	46	21	45.7	13	3	23.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.738351297	1.369175649	2	2.488315789	2.488315789	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.94E-36	1	0.0000344	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	112312986	T	C	-	-	-	-	-	-	57	0	0	52	16	30.8	51	13	25.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.537540918	0.768770459	2	2.395194866	1.197597433	2	NA	NA	1	NA	NA	0	4	NA	1	1	1.33E-24	1	4.87E-19	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	112339426	G	A	-	-	-	-	-	-	43	0	0	38	19	50	31	8	25.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.357713288	3	2	2	1	1	0.642286712	1	3	NA	1	NA	0.357713288	NA	2.674864628	1.1345165	2.357713288	2.521157895	1.260578947	2	NA	NA	0	NA	NA	0	4	NA	1	1	6.16E-34	1	2.78E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	112371494	G	A	-	-	-	-	-	-	58	0	0	42	6	14.3	42	1	2.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	0.764499274	0.764499274	1	0.282526316	0.282526316	1	NA	NA	0	NA	NA	1	4	NA	1	1	7.02E-08	1	0.189842622	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	112410943	G	A	-	-	-	-	-	-	54	0	0	54	23	42.6	39	11	28.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	2.277459377	1.138729688	2	3.319684211	1.106561404	3	NA	NA	0	NA	NA	1	4	NA	1	1	1.12E-38	1	7.20E-17	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	58054140	C	T	-	-	-	-	-	-	63	0	0	72	8	11.1	40	3	7.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5	3.293619843	4	2	1	1	1	0.706380157	NA	3	NA	1	NA	0.293619843	0.776113772	0.776113772	1	0.754916225	0.754916225	1	NA	NA	1	NA	NA	0	4	NA	1	1	3.52E-09	1	0.001075403	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	112481113	A	T	-	-	-	-	-	-	70	0	0	49	4	8.2	29	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	0.409345309	0.409345309	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	0.000110643	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	58855320	G	T	LIPC	CCDS10166.1	r.?	-	-	intronic	39	0	0	62	8	12.9	24	0	0	0	0	NA	1	0	0	0	0	NA	1	FALSE	FALSE	5	3.293619843	4	2	1	1	1	0.706380157	NA	3	NA	1	NA	0.293619843	0.90197006	0.90197006	1	0	NA	0	0	0	1	NA	NA	0	NA	NA	1	1	1.04E-09	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	112628925	G	A	-	-	-	-	-	-	37	0	0	43	8	18.6	33	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.11451497	1.11451497	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	4.85E-11	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	112638755	C	T	-	-	-	-	-	-	43	0	0	52	10	19.2	38	7	18.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5	5.491323809	4	4	1	1	1	0.508676191	NA	5	NA	1	NA	0.491323809	1.342467066	1.342467066	1	2.256438668	0.905718743	2.491323809	NA	NA	1	NA	NA	1	4	NA	1	1	1.28E-13	1	8.61E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	112657262	C	T	-	-	-	-	-	-	17	0	0	45	14	31.1	23	4	17.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.863516966	0.931758483	2	1.874315789	1.874315789	1	NA	NA	1	NA	NA	1	4	NA	1	1	8.81E-22	1	0.00000513	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	112720862	T	A	-	-	-	-	-	-	59	0	0	33	5	15.2	32	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	0.758786427	0.758786427	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	0.00000066	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	112749154	A	T	MERTK	CCDS2094.1	r.?	-	-	intronic	38	0	0	51	19	37.3	42	11	26.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.128496294	4	2	2	2	2	0.871503706	1	3	NA	2	NA	0.128496294	NA	2.282951074	1.07256521	2.128496294	2.822245614	1.411122807	2	NA	NA	1	NA	NA	1	4	NA	1	1	7.94E-31	1	1.81E-16	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	112768886	C	T	-	-	-	-	-	-	65	0	0	49	7	14.3	45	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.856858283	0.856858283	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	5.58E-09	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	112800237	G	A	-	-	-	-	-	-	39	0	0	47	19	40.4	56	16	28.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	2.016774451	1.008387226	2	2.686375418	1.343187709	2	NA	NA	1	NA	NA	0	4	NA	1	1	1.16E-31	1	5.26E-24	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	61045760	G	A	RORA	CCDS10177.1	r.?	-	-	intronic	55	0	0	52	10	19.2	46	6	13	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3.293619843	2	2	1	1	1	0.706380157	NA	3	NA	1	NA	0.293619843	0.958467066	0.958467066	1	1.308521457	1.308521457	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.28E-13	1	0.000000123	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	112850309	G	T	-	-	-	-	-	-	43	0	0	52	15	28.8	21	4	19	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	1.539690846	0.935489114	1.645867197	2.236666667	2.236666667	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.15E-22	1	0.00000349	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	112859646	G	T	-	-	-	-	-	-	48	0	0	52	14	26.9	32	3	9.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.342852295	1.342852295	1	1.106561404	1.106561404	1	NA	NA	0	NA	NA	1	4	NA	1	1	9.04E-21	1	0.000556213	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	112889741	C	G	PALM2-AKAP2	CCDS35100.1	r.?	-	-	intronic	20	0	0	25	6	24	28	1	3.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	0.958083832	0.958083832	1	0.387789474	0.387789474	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.55E-09	1	0.130947004	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	112898350	T	G	-	-	-	-	-	-	55	0	0	47	5	10.6	41	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3.858200392	2.620991218	2	2	1	0	0.141799608	0.379008782	2	2	2	1	0.858200392	0.620991218	0.620122934	0.620122934	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	0.00000402	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	62731199	C	G	-	-	-	-	-	-	56	0	0	47	7	14.9	37	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3.293619843	2	2	1	1	1	0.706380157	NA	3	NA	1	NA	0.293619843	0.743810379	0.743810379	1	0	0	1	NA	NA	1	NA	NA	0	3	NA	1	1	4.12E-09	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	112990694	C	G	-	-	-	-	-	-	51	0	0	47	11	23.4	24	5	20.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.402131737	1.402131737	1	2.240561404	2.240561404	1	NA	NA	1	NA	NA	1	4	NA	1	1	7.21E-16	1	0.000000123	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	113014080	T	C	-	-	-	-	-	-	49	0	0	35	8	22.9	31	1	3.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.372171657	1.372171657	1	0.344701754	0.344701754	1	NA	NA	1	NA	NA	1	4	NA	1	1	8.15E-12	1	0.143917729	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	113049081	C	T	-	-	-	-	-	-	45	0	0	50	17	34	44	10	22.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.858200392	2.620991218	2	2	1	0	0.141799608	0.379008782	2	2	2	1	0.858200392	0.620991218	1.989073562	0.994536781	2	2.132193077	1.066096538	2	NA	NA	1	NA	NA	0	4	NA	1	1	6.43E-27	1	2.08E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	113105671	G	T	-	-	-	-	-	-	43	0	0	35	9	25.7	34	8	23.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	1.025948104	1.025948104	1	2.531403509	0.84380117	3	NA	NA	0	NA	NA	1	4	NA	1	1	1.23E-13	1	6.32E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	113150827	A	G	SVEP1	CCDS48004.1	r.?	-	-	intronic	22	0	0	31	5	16.1	15	5	33.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	0.642714571	0.642714571	1	3.587052632	1.195684211	3	NA	NA	0	NA	NA	1	4	NA	1	1	0.000000476	1	0.000000009	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	113188941	T	C	SVEP1	CCDS48004.1	r.?	-	-	intronic	42	0	0	25	4	16	30	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	0.638722555	0.638722555	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	0.00000727	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	113191531	T	C	-	-	-	-	-	-	49	0	0	32	5	15.6	24	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.622754491	0.622754491	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.000000562	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	113199579	C	A	-	-	-	-	-	-	53	0	0	56	6	10.7	38	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3.858200392	2.620991218	2	2	1	0	0.141799608	0.379008782	2	2	2	1	0.858200392	0.620991218	0.625973151	0.625973151	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	0.000000409	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	67363773	C	A	SMAD3	CCDS10222.1	r.?	-	-	intronic	37	0	0	46	9	19.6	39	0	0	217	0	0	179	41	22.9	183	4	2.2	0.112609638	TRUE	TRUE	3	3.293619843	2	2	1	1	1	0.706380157	NA	3	NA	1	NA	0.293619843	0.97843513	0.97843513	1	0	0	1	1.143171657	1.143171657	1	0.221442093	0.75417959	0.293619843	3	3	1	1	1.82E-12	1.12E-54	1	0.013946145	YES	1_1	0_1	somatic	custom.pulldown.HiSeq
PD9852b	15	70892744	G	T	-	-	-	-	-	-	42	0	0	28	4	14.3	30	3	10	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3.293619843	2	2	1	1	1	0.706380157	NA	3	NA	1	NA	0.293619843	0.713858283	0.713858283	1	1.006554967	1.006554967	1	NA	NA	0	NA	NA	0	4	NA	1	1	0.0000116	1	0.000458697	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	113330283	T	A	SVEP1	CCDS48004.1	r.?	-	-	intronic	45	0	0	30	6	20	33	1	3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	0.798403194	0.798403194	1	0.323157895	0.323157895	1	NA	NA	0	NA	NA	1	4	NA	1	1	8.37E-09	1	0.15245715	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	113341033	C	T	SIDT1	CCDS2974.1	r.?	-	-	intronic	45	0	0	47	13	27.7	40	5	12.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	1.48088321	1.48088321	1	1.471491228	1.471491228	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.47E-19	1	0.00000178	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	113373866	G	A	ATP11A	CCDS32011.1	r.?	-	-	intronic	41	0	0	52	10	19.2	35	4	11.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.150467066	1.150467066	1	1.228	1.228	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.28E-13	1	0.0000289	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	113414795	C	T	-	-	-	-	-	-	51	0	0	50	6	12	27	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5	5.491323809	4	4	1	1	1	0.508676191	NA	5	NA	1	NA	0.491323809	0.839041916	0.839041916	1	0	0	1	NA	NA	1	NA	NA	0	3	NA	1	1	0.000000206	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	113427121	C	G	-	-	-	-	-	-	35	0	0	23	9	39.1	29	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1.474974183	2	1	2	0	0	0.525025817	1	2	NA	0	NA	0.474974183	NA	1.355593149	1.355593149	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	1.50E-15	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	113428164	C	A	CSMD3	CCDS6315.1	r.?	-	-	intronic	62	0	0	51	11	21.6	38	4	10.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.858200392	2.620991218	2	2	1	0	0.141799608	0.379008782	2	2	2	1	0.858200392	0.620991218	1.263646734	1.263646734	1	0.986256709	0.986256709	1	NA	NA	0	NA	NA	0	4	NA	1	1	1.94E-15	1	0.0000403	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	113436662	C	T	-	-	-	-	-	-	50	0	0	56	16	28.6	42	9	21.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5	5.491323809	4	4	1	1	1	0.508676191	NA	5	NA	1	NA	0.491323809	1.999716567	0.999858283	2	2.624336277	1.053390277	2.491323809	NA	NA	1	NA	NA	1	4	NA	1	1	5.26E-24	1	7.51E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	113445069	T	A	NAA50	CCDS2975.1	r.?	-	-	intronic	48	0	0	43	15	34.9	36	9	25	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	1.865805921	0.932902961	2	2.942982456	0.980994152	3	NA	NA	0	NA	NA	1	4	NA	1	1	4.05E-24	1	1.63E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	113446131	A	T	-	-	-	-	-	-	17	0	0	48	5	10.4	30	0	0	0	0	NA	0	0	NA	1	0	0	1	TRUE	FALSE	4.128496294	4	2	2	2	2	0.871503706	1	3	NA	2	NA	0.128496294	NA	0.636533275	0.636533275	1	0	0	1	NA	NA	0	0	0	1	3	NA	1	1	0.00000447	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	113452871	C	T	CSMD3	CCDS6315.1	r.?	-	-	intronic	40	0	0	50	6	12	32	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3.858200392	2.620991218	2	2	1	0	0.141799608	0.379008782	2	2	2	1	0.858200392	0.620991218	0.702025963	0.702025963	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	0.000000206	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	113524162	T	G	CKAP2L	CCDS2100.1	r.?	-	-	upstream	50	0	0	58	13	22.4	46	12	26.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.128496294	4	2	2	2	2	0.871503706	1	3	NA	2	NA	0.128496294	NA	1.370994747	1.370994747	1	2.811473684	1.405736842	2	NA	NA	1	NA	NA	1	4	NA	1	1	3.12E-18	1	8.12E-18	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	113559357	A	C	CSMD3	CCDS6315.1	r.?	-	-	intronic	39	0	0	56	11	19.6	33	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3.858200392	2.620991218	2	2	1	0	0.141799608	0.379008782	2	2	2	1	0.858200392	0.620991218	1.146642407	1.146642407	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	5.91E-15	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	113566372	G	A	GRAMD1C	CCDS33826.1	r.?	-	-	intronic	49	0	0	42	16	38.1	30	5	16.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	2.036882682	1.018441341	2	1.965912281	1.965912281	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.25E-26	1	0.000000401	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	113580262	C	A	PPP1R3A	ENST00000449795	r.?	-	-	intronic	57	0	0	62	14	22.6	38	7	18.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.354195609	1.354195609	1	1.982035088	0.991017544	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.42E-19	1	8.61E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	113586137	C	T	CSMD3	CCDS6315.1	r.?	-	-	intronic	48	0	0	49	10	20.4	37	3	8.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.858200392	2.620991218	2	2	1	0	0.141799608	0.379008782	2	2	2	1	0.858200392	0.620991218	1.193444137	1.193444137	1	0.760826604	0.760826604	1	NA	NA	1	NA	NA	0	4	NA	1	1	6.72E-14	1	0.000855237	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	113604150	G	C	-	-	-	-	-	-	22	0	0	32	8	25	25	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	1.248003992	1.248003992	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	3.69E-12	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	113688457	C	A	PPP1R3A	ENST00000449795	r.?	-	-	intronic	44	0	0	39	11	28.2	22	3	13.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.689748503	0.844874251	2	1.464982456	1.464982456	1	NA	NA	1	NA	NA	1	4	NA	1	1	7.20E-17	1	0.000179267	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	113840061	T	A	-	-	-	-	-	-	60	0	0	38	10	26.3	37	5	13.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	1.406037127	1.406037127	1	1.589210526	1.589210526	1	NA	NA	0	NA	NA	1	4	NA	1	1	4.06E-15	1	0.00000119	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	113897012	G	A	CSMD3	CCDS6315.1	r.?	-	-	intronic	61	1	1.6	40	11	27.5	37	3	8.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.372804391	1.372804391	1	0.760826604	0.760826604	1	NA	NA	1	NA	NA	0	4	NA	0.263440347	1	9.88E-17	1	0.000855237	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	113901690	G	C	-	-	-	-	-	-	56	0	0	33	4	12.1	30	4	13.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	0.604033932	0.604033932	1	1.565666667	1.565666667	1	NA	NA	0	NA	NA	1	4	NA	1	1	0.0000228	1	0.0000154	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	113978139	T	C	-	-	-	-	-	-	60	0	0	54	22	40.7	40	10	25	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	2.17588255	1.087941275	2	2.942982456	0.980994152	3	NA	NA	0	NA	NA	1	4	NA	1	1	1.60E-36	1	7.22E-15	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	114016813	G	A	-	-	-	-	-	-	46	0	0	38	24	63.2	26	4	15.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.522954092	1.261477046	2	1.350877193	1.350877193	1	NA	NA	1	NA	NA	1	4	NA	1	1	5.39E-46	1	0.00000856	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	114023103	G	T	ZBTB16	CCDS8367.1	r.?	-	-	intronic	51	0	0	90	10	11.1	49	7	14.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5	5.491323809	4	4	1	1	1	0.508676191	NA	5	NA	1	NA	0.491323809	0.776113772	0.776113772	1	1.75364527	1.75364527	1	NA	NA	1	NA	NA	0	4	NA	1	1	3.88E-11	1	5.58E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	114060489	C	G	MAGI3	CCDS860.1	r.?	-	-	intronic	50	0	0	42	5	11.9	33	0	0	2	0	0	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	0.5940499	0.5940499	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	0.00000228	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	114062700	T	C	ANK2	CCDS3702.1	r.?	-	-	intronic	50	0	0	44	13	29.5	28	3	10.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	1.472644711	1.472644711	1	0.972131728	0.972131728	1	NA	NA	1	NA	NA	0	4	NA	1	1	5.49E-20	1	0.000372895	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	114147767	G	A	FOXP2	CCDS43635.1	r.?	-	-	intronic	49	0	0	54	25	46.3	37	7	18.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.774303393	1.387151697	2	2.035894737	1.017947368	2	NA	NA	1	NA	NA	1	4	NA	1	1	4.36E-43	1	7.05E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	40515116	C	T	-	-	-	-	-	-	48	0	0	40	17	42.5	32	11	34.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.696606786	0.848303393	2	3.01754386	1.50877193	2	NA	NA	1	NA	NA	1	4	NA	1	1	6.07E-29	1	5.72E-18	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	114170005	C	T	-	-	-	-	-	-	31	0	0	35	7	20	31	4	12.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.357713288	3	2	2	1	1	0.642286712	1	3	NA	1	NA	0.357713288	NA	1.069945851	1.069945851	1	1.260578947	1.260578947	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.65E-10	1	0.0000177	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	114217367	C	T	CSMD3	CCDS6315.1	r.?	-	-	intronic	53	0	0	43	18	41.9	42	13	31	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	2.091654691	1.045827345	2	2.911805523	1.455902762	2	NA	NA	1	NA	NA	0	4	NA	1	1	2.06E-30	1	2.72E-20	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	114234050	C	A	ZBTB20	CCDS2981.1	r.?	-	-	intronic	57	0	0	38	8	21.1	38	2	5.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	1.128037391	1.128037391	1	0.623912281	0.623912281	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.67E-11	1	0.015598339	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	114266051	A	T	CSMD3	CCDS6315.1	r.?	-	-	intronic	39	0	0	42	5	11.9	31	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0.5940499	0.5940499	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	0.00000228	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	114295236	A	G	RBM19	CCDS9172.1	r.?	-	-	intronic	19	0	0	45	8	17.8	25	3	12	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.357713288	3	2	2	1	1	0.642286712	1	3	NA	1	NA	0.357713288	NA	0.952251808	0.952251808	1	1.172631579	1.172631579	1	NA	NA	1	NA	NA	0	4	NA	1	1	7.14E-11	1	0.00026475	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	75084587	C	A	CSK	CCDS10269.1	r.?	-	-	intronic	31	0	0	44	16	36.4	33	1	3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3.293619843	2	2	1	1	1	0.706380157	NA	3	NA	1	NA	0.293619843	1.817093812	0.908546906	2	0.30196649	0.30196649	1	NA	NA	1	NA	NA	0	4	NA	1	1	5.57E-26	1	0.15245715	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	114304374	T	A	FOXP2	CCDS43635.1	r.2335u>a	c.1961T>A	p.L654Q	missense	38	0	0	51	5	9.8	37	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.587217565	0.587217565	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.00000606	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	76334037	G	T	-	-	-	-	-	-	53	0	0	30	11	36.7	29	9	31	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3.293619843	2	2	1	1	1	0.706380157	NA	3	NA	1	NA	0.293619843	1.83206986	0.91603493	2	3.120320397	1.360434863	2.293619843	NA	NA	1	NA	NA	0	4	NA	1	1	2.44E-18	1	1.79E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	114326022	G	A	FOXP2	CCDS43635.1	r.?	-	-	intronic	46	0	0	35	13	37.1	36	5	13.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.223037924	1.111518962	2	1.497298246	1.497298246	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.63E-21	1	0.00000104	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	114328131	T	C	-	-	-	-	-	-	58	0	0	40	4	10	45	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.128496294	4	2	2	2	2	0.871503706	1	3	NA	2	NA	0.128496294	NA	0.612051226	0.612051226	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.0000495	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	114431204	G	A	-	-	-	-	-	-	41	0	0	48	6	12.5	23	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.357713288	3	2	2	1	1	0.642286712	1	3	NA	1	NA	0.357713288	NA	0.668716157	0.668716157	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.00000016	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	114437210	C	T	-	-	-	-	-	-	34	0	0	49	8	16.3	26	1	3.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.357713288	3	2	2	1	1	0.642286712	1	3	NA	1	NA	0.357713288	NA	0.872005869	0.872005869	1	0.371333333	0.371333333	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.47E-10	1	0.122190858	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	114477991	G	T	-	-	-	-	-	-	45	0	0	62	11	17.7	40	2	5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5	5.491323809	4	4	1	1	1	0.508676191	NA	5	NA	1	NA	0.491323809	1.237586826	1.237586826	1	0.613162682	0.613162682	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.96E-14	1	0.017193422	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	114552468	G	A	PGGT1B	CCDS4116.1	r.?	-	-	intronic	43	1	2.3	30	14	46.7	32	6	18.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.864271457	0.932135729	2	1.649122807	1.649122807	1	NA	NA	1	NA	NA	1	4	NA	0.193893409	1	8.24E-25	1	1.27E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	79562398	A	T	-	-	-	-	-	-	65	0	0	42	16	38.1	37	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3.293619843	2	2	1	1	1	0.706380157	NA	3	NA	1	NA	0.293619843	1.901958084	0.950979042	2	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	2.25E-26	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	114665449	C	T	-	-	-	-	-	-	37	0	0	66	19	28.8	34	6	17.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5	5.491323809	4	4	1	1	1	0.508676191	NA	5	NA	1	NA	0.491323809	2.013700599	1.006850299	2	2.158332639	1.07916632	2	NA	NA	1	NA	NA	1	4	NA	1	1	2.64E-28	1	1.86E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	114733533	T	C	-	-	-	-	-	-	42	0	0	34	8	23.5	25	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	0.938123752	0.938123752	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	6.32E-12	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	81986630	T	C	-	-	-	-	-	-	42	0	0	41	18	43.9	37	8	21.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3.293619843	2	2	1	1	1	0.706380157	NA	3	NA	1	NA	0.293619843	2.19149501	1.095747505	2	2.174158728	0.947915905	2.293619843	NA	NA	0	NA	NA	1	4	NA	1	1	6.91E-31	1	1.33E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	114770774	T	C	-	-	-	-	-	-	47	0	0	35	7	20	29	1	3.4	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0.998403194	0.998403194	1	0.319359315	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	4.65E-10	1	0.135292269	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	114806638	C	A	TBX5	CCDS9173.1	r.?	-	-	intronic	29	0	0	39	8	20.5	27	2	7.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.357713288	3	2	2	1	1	0.642286712	1	3	NA	1	NA	0.357713288	NA	1.096694498	1.096694498	1	0.723122807	0.723122807	1	NA	NA	1	NA	NA	0	4	NA	1	1	2.09E-11	1	0.00807567	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	115024651	A	C	-	-	-	-	-	-	47	0	0	55	20	36.4	50	14	28	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.181093812	1.090546906	2	3.016140351	1.508070175	2	NA	NA	1	NA	NA	1	4	NA	1	1	4.08E-32	1	4.84E-21	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	115036060	T	C	-	-	-	-	-	-	39	0	0	47	15	31.9	26	4	15.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.128496294	4	2	2	2	2	0.871503706	1	3	NA	2	NA	0.128496294	NA	1.952443412	0.976221706	2	1.658877193	1.658877193	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.97E-23	1	0.00000856	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	115084639	T	C	-	-	-	-	-	-	50	0	0	43	14	32.6	44	4	9.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.953397206	0.976698603	2	0.980245614	0.980245614	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.18E-22	1	0.0000723	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	115095847	C	A	-	-	-	-	-	-	44	0	0	40	6	15	20	2	10	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.357713288	3	2	2	1	1	0.642286712	1	3	NA	1	NA	0.357713288	NA	0.802459388	0.802459388	1	0.977192982	0.977192982	1	NA	NA	1	NA	NA	0	4	NA	1	1	5.18E-08	1	0.004473894	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	115113472	T	A	-	-	-	-	-	-	47	0	0	47	16	34	42	8	19	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.697285429	0.848642715	2	1.784654998	1.784654998	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.98E-25	1	3.96E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	88315706	C	A	-	-	-	-	-	-	50	0	0	45	7	15.6	30	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3.293619843	2	2	1	1	1	0.706380157	NA	3	NA	1	NA	0.293619843	0.778754491	0.778754491	1	0	0	1	NA	NA	1	NA	NA	0	3	NA	1	1	0.000000003	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	115138212	T	A	-	-	-	-	-	-	24	0	0	47	10	21.3	26	1	3.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.357713288	3	2	2	1	1	0.642286712	1	3	NA	1	NA	0.357713288	NA	1.139492332	1.139492332	1	0.371333333	0.371333333	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.27E-14	1	0.122190858	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	115177781	A	C	HSDL2	CCDS43864.1	r.?	-	-	intronic	43	0	0	22	3	13.6	29	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	0.542914172	0.542914172	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	0.000179267	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	115186855	G	T	-	-	-	-	-	-	48	0	0	31	16	51.6	31	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	2.57588024	1.28794012	2	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	4.27E-29	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	115190914	C	G	-	-	-	-	-	-	49	0	0	40	5	12.5	35	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0.624001996	0.624001996	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	0.00000178	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	115221238	C	G	AMPD1	CCDS876.1	r.?	-	-	intronic	44	0	0	53	20	37.7	27	8	29.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.88199002	0.94099501	2	3.484491228	1.161497076	3	NA	NA	0	NA	NA	1	4	NA	1	1	1.65E-32	1	7.97E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	115254227	C	G	-	-	-	-	-	-	43	0	0	41	13	31.7	28	10	35.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.582469062	0.791234531	2	3.353272812	1.676636406	2	NA	NA	1	NA	NA	0	4	NA	1	1	1.89E-20	1	1.18E-16	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	115265809	C	T	-	-	-	-	-	-	39	0	0	29	6	20.7	26	2	7.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.826347305	0.826347305	1	0.675438596	0.675438596	1	NA	NA	1	NA	NA	1	4	NA	1	1	6.72E-09	1	0.007502227	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	115287401	G	C	-	-	-	-	-	-	34	0	0	40	13	32.5	22	5	22.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	1.737498351	1.05567348	1.645867197	2.67222807	0.89074269	3	NA	NA	0	NA	NA	1	4	NA	1	1	1.30E-20	1	7.67E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	115326923	G	A	DPP10	CCDS46400.1	r.?	-	-	intronic	44	0	0	52	13	25	31	1	3.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.128496294	4	2	2	2	2	0.871503706	1	3	NA	2	NA	0.128496294	NA	1.530128065	1.530128065	1	0.344701754	0.344701754	1	NA	NA	1	NA	NA	1	4	NA	1	1	6.47E-19	1	0.143917729	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	115404309	T	C	-	-	-	-	-	-	62	0	0	52	15	28.8	39	12	30.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.437700599	1.437700599	1	2.893019681	1.44650984	2	NA	NA	1	NA	NA	0	4	NA	1	1	1.15E-22	1	8.43E-19	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	115407966	G	A	DPP10	CCDS46400.1	r.?	-	-	intronic	42	0	0	43	10	23.3	45	6	13.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.128496294	4	2	2	2	2	0.871503706	1	3	NA	2	NA	0.128496294	NA	1.426079357	1.426079357	1	1.432666667	1.432666667	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.61E-14	1	0.000000108	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	115450089	G	T	-	-	-	-	-	-	43	0	0	34	6	17.6	32	0	0	192	0	0	331	29	8.8	281	0	0	1	FALSE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	0.87859481	0.87859481	1	0	NA	0	0.439297405	0.439297405	1	0	NA	0	NA	NA	1	1	1.86E-08	1.64E-26	1	1	YES	1_1	0_0	somatic	custom.pulldown.HiSeq
PD9852b	11	115497516	T	C	-	-	-	-	-	-	43	0	0	55	33	60	36	12	33.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5	5.491323809	4	4	1	1	1	0.508676191	NA	5	NA	1	NA	0.491323809	4.195209581	1.048802395	4	4.08366346	1.020915865	4	NA	NA	1	NA	NA	1	4	NA	1	1	1.36E-61	1	2.73E-19	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	115505485	G	C	DPP10	CCDS46400.1	r.?	-	-	intronic	48	0	0	57	5	8.8	30	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.128496294	4	2	2	2	2	0.871503706	1	3	NA	2	NA	0.128496294	NA	0.538605079	0.538605079	1	0	0	1	NA	NA	1	NA	NA	0	3	NA	1	1	0.0000105	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	115599620	G	T	DPP10	CCDS46400.1	r.?	-	-	intronic	42	0	0	66	22	33.3	32	3	9.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.128496294	4	2	2	2	2	0.871503706	1	3	NA	2	NA	0.128496294	NA	2.038130583	1.019065292	2	1.012561404	1.012561404	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.52E-34	1	0.000556213	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	115645158	A	T	-	-	-	-	-	-	41	0	0	35	4	11.4	29	2	6.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	0.56908982	0.56908982	1	0.626888684	0.626888684	1	NA	NA	1	NA	NA	0	4	NA	1	1	0.0000289	1	0.009279585	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	93861832	C	G	-	-	-	-	-	-	39	0	0	45	8	17.8	31	1	3.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3.293619843	2	2	1	1	1	0.706380157	NA	3	NA	1	NA	0.293619843	0.888578842	0.888578842	1	0.322097589	0.322097589	1	NA	NA	1	NA	NA	0	4	NA	1	1	7.14E-11	1	0.143917729	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	115708254	A	T	-	-	-	-	-	-	47	0	0	38	10	26.3	24	2	8.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	1.3129002	1.3129002	1	0.75408349	0.75408349	1	NA	NA	1	NA	NA	0	4	NA	1	1	4.06E-15	1	0.006413403	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	115712470	G	A	-	-	-	-	-	-	32	0	0	34	5	14.7	24	1	4.2	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	0.733826347	0.733826347	1	0.381584417	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	0.000000771	1	0.113346489	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	115730007	C	A	DPP10	CCDS46400.1	r.?	-	-	intronic	73	0	0	39	6	15.4	32	4	12.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.128496294	4	2	2	2	2	0.871503706	1	3	NA	2	NA	0.128496294	NA	0.942558888	0.942558888	1	1.346491228	1.346491228	1	NA	NA	0	NA	NA	1	4	NA	1	1	4.43E-08	1	0.0000201	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	115869070	C	T	NDST4	CCDS3706.1	r.?	-	-	intronic	59	0	0	33	20	60.6	30	4	13.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	3.025161677	1.512580838	2	1.208350653	1.208350653	1	NA	NA	1	NA	NA	0	4	NA	1	1	5.14E-38	1	0.0000154	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	115877538	C	T	NDST4	CCDS3706.1	r.?	-	-	intronic	43	0	0	46	16	34.8	29	2	6.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	1.737221557	0.868610778	2	0.626888684	0.626888684	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.31E-25	1	0.009279585	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	115901358	G	A	-	-	-	-	-	-	38	0	0	37	7	18.9	28	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	0.754491018	0.754491018	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	7.05E-10	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	116018366	G	A	-	-	-	-	-	-	44	0	0	64	7	10.9	26	3	11.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5	5.491323809	4	4	1	1	1	0.508676191	NA	5	NA	1	NA	0.491323809	0.762129741	0.762129741	1	1.410274168	1.410274168	1	NA	NA	1	NA	NA	0	4	NA	1	1	3.78E-08	1	0.000298167	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	95254012	T	A	-	-	-	-	-	-	27	0	0	36	13	36.1	29	4	13.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3.293619843	2	2	1	1	1	0.706380157	NA	3	NA	1	NA	0.293619843	1.802117764	0.901058882	2	1.389045854	1.389045854	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.53E-21	1	0.0000134	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	47438167	G	A	MDGA2	CCDS41948.1	r.?	-	-	intronic	47	0	0	25	5	20	29	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.798403194	0.798403194	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.000000153	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	96627379	G	A	-	-	-	-	-	-	30	0	0	40	12	30	24	3	12.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3.293619843	2	2	1	1	1	0.706380157	NA	3	NA	1	NA	0.293619843	1.49760479	1.49760479	1	1.258193708	1.258193708	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.20E-18	1	0.000233853	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	75693231	G	A	-	-	-	-	-	-	30	0	0	26	5	19.2	28	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	3	2	3	0	0	1	1	NA	NA	NA	NA	NA	NA	0.766467066	0.766467066	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	0.000000188	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	116110243	A	G	DPP10	CCDS46400.1	r.?	-	-	intronic	55	0	0	44	10	22.7	48	5	10.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.128496294	4	2	2	2	2	0.871503706	1	3	NA	2	NA	0.128496294	NA	1.389356283	1.389356283	1	1.120280702	1.120280702	1	NA	NA	1	NA	NA	0	4	NA	1	1	2.08E-14	1	0.00000447	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	116140372	C	A	-	-	-	-	-	-	48	0	0	48	9	18.8	28	3	10.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	0.938499002	0.938499002	1	1.259596491	1.259596491	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.75E-12	1	0.000372895	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	116141388	C	T	-	-	-	-	-	-	54	0	0	37	8	21.6	41	2	4.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.078275449	1.078275449	1	0.460253131	0.460253131	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.33E-11	1	0.018015855	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	116178459	C	A	LSAMP	ENST00000474851	r.?	-	-	intronic	44	0	0	37	5	13.5	36	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	0.721730084	0.721730084	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	0.00000119	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	116209997	G	A	-	-	-	-	-	-	30	0	0	46	14	30.4	27	8	29.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5	5.491323809	4	4	1	1	1	0.508676191	NA	5	NA	1	NA	0.491323809	2.125572854	1.062786427	2	3.629923075	1.039698199	3.491323809	NA	NA	0	NA	NA	0	4	NA	1	1	1.26E-21	1	7.97E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	99558137	G	T	-	-	-	-	-	-	22	0	0	35	4	11.4	6	0	0	38	0	0	13	2	15.4	10	0	0	1	TRUE	FALSE	3	3.293619843	2	2	1	1	1	0.706380157	NA	3	NA	1	NA	0.293619843	0.56908982	0.56908982	1	0	0	1	0.768770459	0.768770459	1	0	NA	0	4	NA	1	1	0.0000289	0.001879825	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	116224570	C	T	DPP10	CCDS46400.1	r.?	-	-	intronic	44	0	0	43	16	37.2	38	6	15.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.128496294	4	2	2	2	2	0.871503706	1	3	NA	2	NA	0.128496294	NA	2.276830561	1.0696897	2.128496294	1.701964912	1.701964912	1	NA	NA	0	NA	NA	1	4	NA	1	1	3.56E-26	1	3.76E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	116231564	G	A	DPP10	CCDS46400.1	r.?	-	-	intronic	44	0	0	43	14	32.6	28	6	21.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.128496294	4	2	2	2	2	0.871503706	1	3	NA	2	NA	0.128496294	NA	1.995286997	0.997643499	2	2.305192982	1.152596491	2	NA	NA	1	NA	NA	1	4	NA	1	1	4.18E-22	1	5.36E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	116281004	C	T	-	-	-	-	-	-	31	0	0	22	8	36.4	26	4	15.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.453093812	1.453093812	1	1.350877193	1.350877193	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.17E-13	1	0.00000856	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	116287572	C	T	-	-	-	-	-	-	35	0	0	42	11	26.2	25	3	12	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	1.307908184	1.307908184	1	1.09024119	1.09024119	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.81E-16	1	0.00026475	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	116299974	G	T	LSAMP	ENST00000474851	r.?	-	-	intronic	50	0	0	39	4	10.3	32	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	0.550653323	0.550653323	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	0.0000447	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	116322297	C	A	-	-	-	-	-	-	51	0	0	26	9	34.6	23	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.381237525	1.381237525	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	5.65E-15	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	116387019	G	A	-	-	-	-	-	-	19	0	0	22	8	36.4	18	1	5.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	1.453093812	1.453093812	1	0.60322807	0.60322807	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.17E-13	1	0.086275114	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	116402409	G	T	-	-	-	-	-	-	45	0	0	57	6	10.5	44	1	2.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5	5.491323809	4	4	1	1	1	0.508676191	NA	5	NA	1	NA	0.491323809	0.734161677	0.734161677	1	0.282054834	0.282054834	1	NA	NA	0	NA	NA	0	4	NA	1	1	0.000000456	1	0.197923942	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	116480030	G	C	-	-	-	-	-	-	46	0	0	19	8	42.1	28	5	17.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.680638723	1.680638723	1	1.570175439	1.570175439	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.81E-14	1	0.000000279	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	116483628	T	C	DPP10	CCDS46400.1	r.?	-	-	intronic	53	0	0	45	7	15.6	34	1	2.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.128496294	4	2	2	2	2	0.871503706	1	3	NA	2	NA	0.128496294	NA	0.954799913	0.954799913	1	0.312385965	0.312385965	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.000000003	1	0.156694864	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	116490456	T	A	TRPS1	CCDS6318.2	r.?	-	-	intronic	53	0	0	34	8	23.5	36	5	13.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.173123752	1.173123752	1	1.305616025	1.305616025	1	NA	NA	1	NA	NA	0	4	NA	1	1	6.32E-12	1	0.00000104	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	116560732	G	A	-	-	-	-	-	-	54	0	0	25	12	48	25	3	12	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	2.396167665	1.198083832	2	1.09024119	1.09024119	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.20E-21	1	0.00026475	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	2956656	C	T	-	-	-	-	-	-	24	0	0	49	32	65.3	34	15	44.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5.835011195	5	5	4	0	1	0.164988805	1	5	NA	1	NA	0.835011195	NA	5.111048737	1.022209747	5	5.191421053	1.297855263	4	NA	NA	0	NA	NA	0	4	NA	1	1	1.39E-61	1	5.18E-26	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	116596563	T	C	-	-	-	-	-	-	49	0	0	29	9	31	24	3	12.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1.474974183	2	1	2	0	0	0.525025817	1	2	NA	0	NA	0.474974183	NA	1.074766947	1.074766947	1	1.096491228	1.096491228	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.79E-14	1	0.000233853	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	116693544	A	T	ST7OT3	CCDS5770.1	r.?	-	-	intronic	48	0	0	59	5	8.5	36	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.509321357	0.509321357	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.0000125	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	116723830	C	T	TRPS1	ENST00000422939	r.?	-	-	intronic	59	0	0	40	8	20	34	4	11.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0.998403194	0.998403194	1	1.108364683	1.108364683	1	NA	NA	1	NA	NA	0	4	NA	1	1	2.61E-11	1	0.0000257	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	116770721	G	A	-	-	-	-	-	-	39	0	0	36	15	41.7	28	3	10.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	2.081670659	1.040835329	2	0.972131728	0.972131728	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.54E-25	1	0.000372895	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	116778001	C	G	ST7OT3	CCDS5770.1	r.?	-	-	intronic	65	0	0	42	8	19	47	6	12.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.138483034	1.138483034	1	1.378807018	1.378807018	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.96E-11	1	0.000000141	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	116778741	C	T	-	-	-	-	-	-	65	0	0	23	15	65.2	36	5	13.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.602794411	1.301397206	2	1.219298246	1.219298246	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.44E-29	1	0.00000104	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	116825197	A	G	LSAMP	ENST00000474851	r.?	-	-	intronic	46	0	0	36	18	50	39	6	15.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	2.673074386	1.336537193	2	1.812877193	1.812877193	1	NA	NA	0	NA	NA	1	4	NA	1	1	3.18E-32	1	4.43E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	7403966	T	A	ENSG00000078328	CCDS45405.1	r.?	-	-	intronic	49	0	0	44	8	18.2	44	5	11.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	5.626372055	2	3	2	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	1.090546906	1.090546906	1	1.413406414	1.413406414	1	NA	NA	0	NA	NA	0	4	NA	1	1	5.90E-11	1	0.00000288	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	116944160	G	C	-	-	-	-	-	-	39	0	0	55	20	36.4	37	5	13.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.128496294	4	2	2	2	2	0.871503706	1	3	NA	2	NA	0.128496294	NA	2.227866463	1.04668562	2.128496294	1.454210526	1.454210526	1	NA	NA	0	NA	NA	1	4	NA	1	1	4.08E-32	1	0.00000119	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	116981792	T	G	-	-	-	-	-	-	50	0	0	19	10	52.6	25	8	32	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1.474974183	2	1	2	0	0	0.525025817	1	2	NA	0	NA	0.474974183	NA	1.82363682	1.236385586	1.474974183	2.807017544	1.403508772	2	NA	NA	0	NA	NA	1	4	NA	1	1	8.66E-19	1	3.92E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	116995532	T	C	-	-	-	-	-	-	46	0	0	27	12	44.4	24	7	29.2	0	0	NA	2	2	100	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.77245509	0.886227545	2	2.561403509	1.280701754	2	3.992015968	3.992015968	1	NA	NA	1	4	NA	1	1	3.96E-21	0.000025	2.51E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	117034280	T	A	PAFAH1B2	CCDS8380.1	r.?	-	-	intronic	34	0	0	40	8	20	28	1	3.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5	5.491323809	4	4	1	1	1	0.508676191	NA	5	NA	1	NA	0.491323809	1.398403194	1.398403194	1	0.441477131	0.441477131	1	NA	NA	0	NA	NA	0	4	NA	1	1	2.61E-11	1	0.130947004	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	117039940	C	T	-	-	-	-	-	-	51	0	0	42	8	19	30	6	20	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	1.015768267	1.015768267	1	2.354385965	1.177192982	2	NA	NA	0	NA	NA	1	4	NA	1	1	3.96E-11	1	8.37E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	117092503	C	G	PCSK7	CCDS8382.1	r.?	-	-	intronic	40	0	0	51	12	23.5	31	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5	5.491323809	4	4	1	1	1	0.508676191	NA	5	NA	1	NA	0.491323809	1.643123752	0.821561876	2	0	0	1	NA	NA	1	NA	NA	0	3	NA	1	1	3.24E-17	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	117093024	A	T	AF130342.1	ENST00000505156	r.?	-	-	intronic	63	0	0	34	5	14.7	35	4	11.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0.733826347	0.733826347	1	1.070792999	1.070792999	1	NA	NA	1	NA	NA	0	4	NA	1	1	0.000000771	1	0.0000289	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	117130547	C	T	CFTR	CCDS5773.1	r.?	-	-	intronic	37	0	0	52	19	36.5	29	6	20.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.187085828	1.093542914	2	2.229789474	1.114894737	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.24E-30	1	6.72E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	117131502	C	G	-	-	-	-	-	-	50	0	0	32	7	21.9	31	2	6.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	1.170806581	1.170806581	1	0.765175439	0.765175439	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.36E-10	1	0.010558179	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	117276669	T	C	CFTR	CCDS5773.1	r.?	-	-	intronic	43	0	0	41	17	41.5	32	5	15.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.486686627	1.243343313	2	1.680421053	1.680421053	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.03E-28	1	0.000000562	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	117288905	A	T	-	-	-	-	-	-	46	0	0	35	4	11.4	30	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.128496294	4	2	2	2	2	0.871503706	1	3	NA	2	NA	0.128496294	NA	0.697738398	0.697738398	1	0	0	1	NA	NA	1	NA	NA	0	3	NA	1	1	0.0000289	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	117438357	C	A	-	-	-	-	-	-	40	0	0	53	33	62.3	30	7	23.3	0	0	NA	0	0	NA	2	0	0	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	3.110025948	1.555012974	2	2.742859649	0.91428655	3	NA	NA	0	0	0	1	4	NA	1	1	2.14E-62	1	1.44E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	117475015	G	T	-	-	-	-	-	-	36	0	0	43	8	18.6	30	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.128496294	4	2	2	2	2	0.871503706	1	3	NA	2	NA	0.128496294	NA	1.138415281	1.138415281	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	4.85E-11	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	117476103	G	A	TESC	CCDS9183.2	r.?	-	-	downstream	22	0	0	32	6	18.8	13	2	15.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.357713288	3	2	2	1	1	0.642286712	1	3	NA	1	NA	0.357713288	NA	1.0057491	1.0057491	1	1.504877193	1.504877193	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.27E-08	1	0.001879825	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	117480723	C	A	-	-	-	-	-	-	33	0	0	35	10	28.6	38	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	1.141716567	1.141716567	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	1.60E-15	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	117512132	G	A	-	-	-	-	-	-	23	0	0	43	15	34.9	22	8	36.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.128496294	4	2	2	2	2	0.871503706	1	3	NA	2	NA	0.128496294	NA	2.136058779	1.003552971	2.128496294	3.920982456	1.960491228	2	NA	NA	0	NA	NA	0	4	NA	1	1	4.05E-24	1	1.17E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	117540374	G	C	-	-	-	-	-	-	57	0	0	43	5	11.6	42	0	0	128	0	0	342	17	5	366	0	0	1	TRUE	TRUE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	0.620153257	0.620153257	1	0	0	1	0.267307439	0.754822586	0.354132803	0	0	1	3	2	1	1	0.00000257	3.70E-12	1	1	YES	1_1	0_0	somatic	custom.pulldown.HiSeq
PD9852b	7	117553080	A	C	-	-	-	-	-	-	45	0	0	48	17	35.4	38	7	18.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.121173653	1.060586826	2	1.982035088	0.991017544	2	NA	NA	1	NA	NA	1	4	NA	1	1	2.80E-27	1	8.61E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	117597124	T	A	-	-	-	-	-	-	30	0	0	54	29	53.7	47	20	42.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.402297358	2	4	2	0	0	0.597702642	1	5	NA	0	NA	0.402297358	NA	3.433746256	1.00924343	3.402297358	3.736842105	1.868421053	2	NA	NA	0	NA	NA	0	4	NA	1	1	2.78E-52	1	8.18E-34	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	12747123	C	T	-	-	-	-	-	-	45	0	0	55	15	27.3	37	7	18.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	5.626372055	2	3	2	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	1.635820359	0.81791018	2	2.343279055	0.987214134	2.373627945	NA	NA	0	NA	NA	0	4	NA	1	1	3.01E-22	1	7.05E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	117677414	A	T	-	-	-	-	-	-	42	0	0	40	5	12.5	33	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	0.624001996	0.624001996	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	0.00000178	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	117716542	C	T	VTCN1	CCDS894.1	r.?	-	-	intronic	34	0	0	35	8	22.9	23	1	4.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.143171657	1.143171657	1	0.506192982	0.506192982	1	NA	NA	0	NA	NA	1	4	NA	1	1	8.15E-12	1	0.108890944	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	117762704	G	A	-	-	-	-	-	-	29	0	0	46	9	19.6	36	8	22.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.17443513	1.17443513	1	2.391368421	1.195684211	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.82E-12	1	1.04E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	117788426	G	T	-	-	-	-	-	-	50	0	0	50	12	24	33	6	18.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.128496294	4	2	2	2	2	0.871503706	1	3	NA	2	NA	0.128496294	NA	1.468922943	1.468922943	1	1.960491228	1.960491228	1	NA	NA	1	NA	NA	0	4	NA	1	1	2.49E-17	1	1.54E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	117835284	A	G	TNC	CCDS6811.1	r.?	-	-	intronic	41	0	0	29	7	24.1	33	1	3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	0.962075848	0.962075848	1	0.323157895	0.323157895	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.11E-10	1	0.15245715	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	117881284	G	A	-	-	-	-	-	-	44	0	0	33	12	36.4	25	2	8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	1.817093812	0.908546906	2	0.72682746	0.72682746	1	NA	NA	1	NA	NA	0	4	NA	1	1	7.86E-20	1	0.006948068	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	117888698	G	C	KSR2	ENST00000425217	r.?	-	-	downstream	36	0	0	42	17	40.5	29	7	24.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.357713288	3	2	2	1	1	0.642286712	1	3	NA	1	NA	0.357713288	NA	2.166640349	0.918958365	2.357713288	2.355035088	1.177517544	2	NA	NA	1	NA	NA	0	4	NA	1	1	1.73E-28	1	1.11E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	118007258	G	C	-	-	-	-	-	-	53	0	0	44	13	29.5	30	3	10	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	1.577113888	1.577113888	1	1.177192982	1.177192982	1	NA	NA	0	NA	NA	1	4	NA	1	1	5.49E-20	1	0.000458697	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	118014494	G	C	SCN4B	CCDS8389.1	r.?	-	-	intronic	51	0	0	47	10	21.3	39	2	5.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5	5.491323809	4	4	1	1	1	0.508676191	NA	5	NA	1	NA	0.491323809	1.489299401	1.489299401	1	0.625425935	0.625425935	1	NA	NA	1	NA	NA	0	4	NA	1	1	4.27E-14	1	0.016387522	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	118020150	C	G	-	-	-	-	-	-	27	0	0	40	29	72.5	28	14	50	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.402297358	3.60351971	4	3	0	0	0.597702642	0.39648029	5	4	0	0	0.402297358	0.60351971	4.635877161	1.053058616	4.402297358	5.187724767	1.439627138	3.60351971	NA	NA	1	NA	NA	0	4	NA	1	1	4.08E-58	1	2.29E-25	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	118128483	T	A	MPZL2	CCDS8393.1	r.?	-	-	intronic	52	0	0	52	7	13.5	34	4	11.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5	5.491323809	4	4	1	1	1	0.508676191	NA	5	NA	1	NA	0.491323809	0.943922156	0.943922156	1	1.447063929	1.447063929	1	NA	NA	1	NA	NA	1	4	NA	1	1	8.58E-09	1	0.0000257	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	118162329	G	A	-	-	-	-	-	-	41	0	0	30	10	33.3	37	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.329341317	1.329341317	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	2.68E-16	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	118179261	T	G	-	-	-	-	-	-	60	0	0	39	4	10.3	32	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.617177645	0.617177645	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.0000447	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	118283343	T	C	-	-	-	-	-	-	29	0	0	27	11	40.7	18	4	22.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.624750499	0.81237525	2	1.947368421	1.947368421	1	NA	NA	1	NA	NA	1	4	NA	1	1	5.92E-19	1	0.00000181	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	118342020	C	T	-	-	-	-	-	-	47	0	0	47	6	12.8	38	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0.638978044	0.638978044	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	0.000000141	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	118439016	G	C	SLC35F1	CCDS34524.1	r.?	-	-	intronic	48	0	0	38	20	52.6	39	9	23.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.099800399	1.0499002	2	2.026315789	1.013157895	2	NA	NA	1	NA	NA	1	4	NA	1	1	2.94E-36	1	3.62E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	118452531	A	G	-	-	-	-	-	-	53	0	0	36	9	25	14	4	28.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	0.998003992	0.998003992	1	3.08077193	1.026923977	3	NA	NA	0	NA	NA	1	4	NA	1	1	1.63E-13	1	0.000000601	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	118480335	C	G	-	-	-	-	-	-	53	0	0	48	24	50	27	5	18.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.792797466	3.272960587	2	2	1	1	0.207202534	0.727039413	3	3	1	1	0.792797466	0.272960587	2.892406717	1.035666479	2.792797466	1.858304726	1.858304726	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.71E-42	1	0.00000023	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	118496207	C	A	SPAG17	CCDS899.1	r.?	-	-	downstream	52	0	0	36	8	22.2	32	2	6.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.108227545	1.108227545	1	0.729859649	0.729859649	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.04E-11	1	0.011224977	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	13117051	G	T	SHISA9	CCDS45417.1	r.?	-	-	intronic	44	0	0	43	15	34.9	34	10	29.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	5.626372055	2	3	2	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	2.091213573	1.045606786	2	3.645100753	1.215033584	3	NA	NA	0	NA	NA	0	4	NA	1	1	4.05E-24	1	1.15E-15	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	118535794	G	A	-	-	-	-	-	-	63	0	0	48	14	29.2	38	6	15.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.749668663	0.874834331	2	1.701964912	1.701964912	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.51E-21	1	3.76E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	13259729	A	C	SHISA9	CCDS45417.1	r.?	-	-	intronic	48	0	0	44	16	36.4	51	10	19.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	5.626372055	2	3	2	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	2.181093812	1.090546906	2	2.430067168	1.02377762	2.373627945	NA	NA	0	NA	NA	0	4	NA	1	1	5.57E-26	1	1.04E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	118685273	T	C	-	-	-	-	-	-	58	0	0	60	10	16.7	28	1	3.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.792797466	3.272960587	2	2	1	1	0.207202534	0.727039413	3	3	1	1	0.792797466	0.272960587	0.966063843	0.966063843	1	0.361616055	0.361616055	1	NA	NA	1	NA	NA	1	4	NA	1	1	5.86E-13	1	0.130947004	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	118738821	C	T	-	-	-	-	-	-	49	0	0	37	20	54.1	45	14	31.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	2.700680639	1.350340319	2	3.661070175	1.220356725	3	NA	NA	0	NA	NA	1	4	NA	1	1	1.40E-36	1	8.81E-22	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	118814203	A	T	-	-	-	-	-	-	62	0	0	44	6	13.6	47	4	8.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.814914172	0.814914172	1	0.915614035	0.915614035	1	NA	NA	1	NA	NA	1	4	NA	1	1	9.37E-08	1	0.0000939	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	14022676	T	C	ERCC4	CCDS32390.1	r.?	-	-	intronic	58	0	0	57	27	47.4	51	13	25.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	5.626372055	2	3	2	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	2.840215569	1.420107784	2	3.161566979	1.05385566	3	NA	NA	0	NA	NA	0	4	NA	1	1	9.04E-47	1	4.87E-19	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	118981957	C	T	-	-	-	-	-	-	15	0	0	33	12	36.4	8	1	12.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.128496294	4	2	2	2	2	0.871503706	1	3	NA	2	NA	0.128496294	NA	2.227866463	1.04668562	2.128496294	1.346491228	1.346491228	1	NA	NA	1	NA	NA	0	4	NA	1	1	7.86E-20	1	0.039306956	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	119096778	C	T	-	-	-	-	-	-	21	0	0	14	5	35.7	7	1	14.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.357713288	3	2	2	1	1	0.642286712	1	3	NA	1	NA	0.357713288	NA	1.909853345	1.909853345	1	1.397385965	1.397385965	1	NA	NA	0	NA	NA	1	4	NA	1	1	6.03E-09	1	0.034479353	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	119201217	C	A	-	-	-	-	-	-	42	0	0	43	26	60.5	28	6	21.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.415169661	1.20758483	2	1.877192982	1.877192982	1	NA	NA	1	NA	NA	1	4	NA	1	1	5.78E-49	1	5.36E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	119220795	C	G	ASTN2	CCDS48009.1	r.?	-	-	intronic	44	0	0	29	9	31	38	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	1.23752495	1.23752495	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	1.79E-14	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	119237343	G	C	USP2	CCDS8422.1	r.?	-	-	intronic	28	0	0	49	7	14.3	39	2	5.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	4	4	0	0	1	1	NA	NA	NA	NA	NA	NA	0.856858283	0.856858283	1	0.549368421	0.549368421	1	NA	NA	1	NA	NA	1	4	NA	1	1	5.58E-09	1	0.016387522	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	23957604	A	G	PRKCB	CCDS10619.1	r.?	-	-	intronic	30	0	0	55	19	34.5	39	14	35.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.499724906	5.626372055	2	3	2	2	0.500275094	0.373627945	3	3	2	3	0.499724906	0.626372055	2.239650601	0.89595883	2.499724906	4.450990375	1.483663458	3	NA	NA	0	NA	NA	1	4	NA	1	1	4.51E-30	1	8.19E-23	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	79268546	G	T	NRXN3	CCDS9870.1	r.?	-	-	intronic	61	0	0	40	11	27.5	32	2	6.2	0	0	NA	1	0	0	0	0	NA	1	TRUE	FALSE	2	3	2	3	0	0	1	1	NA	NA	NA	NA	NA	NA	1.097804391	1.097804391	1	0.605859649	0.605859649	1	0	NA	0	NA	NA	1	4	NA	1	1	9.88E-17	1	0.011224977	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	119387793	C	T	-	-	-	-	-	-	67	0	0	53	10	18.9	31	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.132491018	1.132491018	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	1.57E-13	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	119406254	C	T	-	-	-	-	-	-	40	0	0	53	15	28.3	42	4	9.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	4	4	0	0	1	1	NA	NA	NA	NA	NA	NA	1.695740519	0.847870259	2	1.023333333	1.023333333	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.60E-22	1	0.0000601	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	119479152	A	G	-	-	-	-	-	-	37	0	0	30	7	23.3	25	2	8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.930139721	0.930139721	1	0.701754386	0.701754386	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.44E-10	1	0.006948068	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	119508402	G	T	-	-	-	-	-	-	60	0	0	52	7	13.5	37	6	16.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.808922156	0.808922156	1	1.745052632	1.745052632	1	NA	NA	1	NA	NA	1	4	NA	1	1	8.58E-09	1	3.18E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	119693260	T	A	-	-	-	-	-	-	32	0	0	40	6	15	26	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.357713288	3	2	2	1	1	0.642286712	1	3	NA	1	NA	0.357713288	NA	0.802459388	0.802459388	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	5.18E-08	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	119711799	G	C	-	-	-	-	-	-	54	0	0	48	11	22.9	28	7	25	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.372171657	1.372171657	1	2.692982456	1.346491228	2	NA	NA	1	NA	NA	1	4	NA	1	1	9.31E-16	1	8.44E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	119712799	A	G	-	-	-	-	-	-	42	0	0	32	16	50	27	2	7.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.996007984	0.998003992	2	0.649122807	0.649122807	1	NA	NA	1	NA	NA	1	4	NA	1	1	8.51E-29	1	0.00807567	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	119716650	T	G	MARCO	CCDS2124.1	r.?	-	-	intronic	45	0	0	61	20	32.8	48	6	12.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.128496294	4	2	2	2	2	0.871503706	1	3	NA	2	NA	0.128496294	NA	2.007528022	1.003764011	2	1.346491228	1.346491228	1	NA	NA	0	NA	NA	0	4	NA	1	1	4.89E-31	1	0.00000016	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	119794070	A	G	-	-	-	-	-	-	51	0	0	41	18	43.9	22	1	4.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.63049501	1.315247505	2	0.484736842	0.484736842	1	NA	NA	1	NA	NA	1	4	NA	1	1	6.91E-31	1	0.104413009	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	119800581	A	C	-	-	-	-	-	-	26	0	0	41	16	39	29	3	10.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.946886228	0.973443114	2	1.212508772	1.212508772	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.40E-26	1	0.000414371	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	119801178	G	C	-	-	-	-	-	-	42	0	0	34	6	17.6	33	3	9.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0.87859481	0.87859481	1	0.854755815	0.854755815	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.86E-08	1	0.000609557	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	119803392	G	C	CCDC60	CCDS9190.1	r.?	-	-	intronic	60	0	0	45	6	13.3	35	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.357713288	3	2	2	1	1	0.642286712	1	3	NA	1	NA	0.357713288	NA	0.711513991	0.711513991	1	0	0	1	NA	NA	1	NA	NA	0	3	NA	1	1	0.000000108	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	119866667	G	A	-	-	-	-	-	-	57	0	0	58	21	36.2	30	6	20	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	1.935305855	0.967652928	2	2.354385965	1.177192982	2	NA	NA	0	NA	NA	1	4	NA	1	1	1.34E-33	1	8.37E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	119869453	G	T	-	-	-	-	-	-	50	0	0	52	4	7.7	38	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.46138523	0.46138523	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.000139698	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	119910178	A	G	HAO2	CCDS901.1	r.?	-	-	upstream	40	0	0	36	7	19.4	28	5	17.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	0.968451098	0.968451098	1	2.107175439	2.107175439	1	NA	NA	0	NA	NA	1	4	NA	1	1	5.74E-10	1	0.000000279	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	33251280	G	A	FMN1	CCDS45209.1	r.?	-	-	intronic	36	0	0	22	9	40.9	22	1	4.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3.455620428	2	2	1	1	1	0.544379572	NA	3	NA	1	NA	0.455620428	2.041734531	1.020867265	2	0.460239761	0.460239761	1	NA	NA	0	NA	NA	1	4	NA	1	1	9.16E-16	1	0.104413009	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	119969361	G	C	-	-	-	-	-	-	47	0	0	54	5	9.3	36	1	2.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.128496294	4	2	2	2	2	0.871503706	1	3	NA	2	NA	0.128496294	NA	0.56920764	0.56920764	1	0.301614035	0.301614035	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.00000806	1	0.165106833	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	120098364	C	T	MYOZ2	CCDS3711.1	r.?	-	-	intronic	45	0	0	55	10	18.2	27	3	11.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.792797466	3.272960587	2	2	1	1	0.207202534	0.727039413	3	3	1	1	0.792797466	0.272960587	1.052836045	1.052836045	1	1.114982836	1.114982836	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.33E-13	1	0.000334187	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	120150682	T	A	-	-	-	-	-	-	47	0	0	31	16	51.6	40	8	20	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.05988024	1.02994012	2	1.754385965	1.754385965	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.27E-29	1	2.61E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	120158545	T	C	-	-	-	-	-	-	55	0	0	32	18	56.2	28	9	32.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.243512974	1.121756487	2	2.815789474	1.407894737	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.68E-33	1	1.24E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	120313945	T	G	CIT	CCDS9192.1	r.81a>c	c.28A>C	p.N10H	missense	34	0	0	33	6	18.2	30	7	23.3	279	0	0	133	16	12	134	16	11.9	6.68E-13	TRUE	TRUE	3.357713288	3	2	2	1	1	0.642286712	1	3	NA	1	NA	0.357713288	NA	0.973650725	0.973650725	1	2.276859649	1.138429825	2	0.641967511	0.641967511	1	1.162859649	1.162859649	1	4	3	1	1	1.54E-08	1.57E-17	1.44E-10	1.78E-17	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	9	120411585	A	T	-	-	-	-	-	-	40	0	0	21	3	14.3	23	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	0.570858283	0.570858283	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	0.000155401	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	120428379	G	A	-	-	-	-	-	-	41	0	0	32	7	21.9	17	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	0.874251497	0.874251497	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	2.36E-10	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	120511653	C	T	-	-	-	-	-	-	39	0	0	30	5	16.7	24	0	0	0	0	NA	0	0	NA	1	0	0	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	0.666666667	0.666666667	1	0	0	1	NA	NA	0	0	0	1	3	NA	1	1	0.000000401	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	120524614	T	C	-	-	-	-	-	-	36	0	0	45	16	35.6	32	5	15.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	4	4	0	0	1	1	NA	NA	NA	NA	NA	NA	2.133157685	1.066578842	2	1.680421053	1.680421053	1	NA	NA	1	NA	NA	1	4	NA	1	1	8.61E-26	1	0.000000562	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	120545222	C	T	GRIK4	CCDS8433.1	r.?	-	-	intronic	43	0	0	48	21	43.8	28	4	14.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	4	4	0	0	1	1	NA	NA	NA	NA	NA	NA	2.624502994	0.874834331	3	1.540385965	1.540385965	1	NA	NA	1	NA	NA	1	4	NA	1	1	9.35E-36	1	0.0000116	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	120573647	G	T	-	-	-	-	-	-	26	0	0	28	6	21.4	36	1	2.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.854291417	0.854291417	1	0.245614035	0.245614035	1	NA	NA	1	NA	NA	1	4	NA	1	1	5.36E-09	1	0.165106833	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	120587815	T	A	-	-	-	-	-	-	48	0	0	39	4	10.3	38	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.792797466	3.272960587	2	2	1	1	0.207202534	0.727039413	3	3	1	1	0.792797466	0.272960587	0.595835784	0.595835784	1	0	0	1	NA	NA	1	NA	NA	0	3	NA	1	1	0.0000447	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	120588187	C	T	NOTCH2	CCDS908.1	r.?	-	-	intronic	40	0	0	44	9	20.5	50	7	14	2	0	0	8	0	0	9	0	0	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.023363273	1.023363273	1	1.648070175	1.648070175	1	0	NA	0	0	0	1	4	NA	1	1	1.18E-12	1	6.46E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	120729542	T	C	RNU4-1B	ENST00000365668	r.?	-	-	downstream	38	0	0	50	9	18	47	3	6.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.357713288	3	2	2	1	1	0.642286712	1	3	NA	1	NA	0.357713288	NA	0.962951266	0.962951266	1	0.625403509	0.625403509	1	NA	NA	0	NA	NA	0	4	NA	1	1	4.07E-12	1	0.001719595	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	120740075	G	A	-	-	-	-	-	-	44	0	0	28	14	50	29	5	17.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.996007984	0.998003992	2	1.50877193	1.50877193	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.29E-25	1	0.000000336	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	120828508	A	G	-	-	-	-	-	-	43	0	0	29	6	20.7	23	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	0.826347305	0.826347305	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	6.72E-09	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	120999913	G	A	STXBP5L	CCDS43137.1	r.?	-	-	intronic	60	0	0	40	12	30	30	4	13.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.351371459	5	2	3	1	2	0.648628541	1	2	NA	2	NA	0.351371459	NA	1.603016228	1.603016228	1	1.565666667	1.565666667	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.20E-18	1	0.0000154	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	121009021	G	A	TECTA	CCDS8434.1	r.?	-	-	intronic	25	0	0	26	4	15.4	24	4	16.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	4	4	0	0	1	1	NA	NA	NA	NA	NA	NA	0.922770459	0.922770459	1	1.798912281	1.798912281	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.00000856	1	0.00000613	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	121065893	C	A	TECTA	CCDS8434.1	r.?	-	-	downstream	57	0	0	39	13	33.3	41	6	14.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	4	4	0	0	1	1	NA	NA	NA	NA	NA	NA	1.995341317	0.997670659	2	1.572701754	1.572701754	1	NA	NA	1	NA	NA	1	4	NA	1	1	8.79E-21	1	6.05E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	121085012	G	C	CABP1	CCDS31913.1	r.?	-	-	intronic	27	0	0	42	7	16.7	31	1	3.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.357713288	3	2	2	1	1	0.642286712	1	3	NA	1	NA	0.357713288	NA	0.893404786	0.893404786	1	0.312701754	0.312701754	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.81E-09	1	0.143917729	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	52535242	T	C	TOX3	ENST00000219746	r.?	-	-	intronic	44	0	0	53	17	32.1	33	7	21.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	5.626372055	2	3	2	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	1.923437126	0.961718563	2	2.628439999	1.107351304	2.373627945	NA	NA	0	NA	NA	0	4	NA	1	1	2.08E-26	1	2.98E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	121261100	C	T	-	-	-	-	-	-	14	0	0	43	18	41.9	16	3	18.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.128496294	4	2	2	2	2	0.871503706	1	3	NA	2	NA	0.128496294	NA	2.564494638	1.204838667	2.128496294	2.025122807	2.025122807	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.06E-30	1	0.0000667	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	35091965	C	A	-	-	-	-	-	-	39	0	0	37	11	29.7	31	2	6.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.499724906	5.626372055	2	3	2	2	0.500275094	0.373627945	3	3	2	3	0.499724906	0.626372055	1.92804704	0.96402352	2	0.805889622	0.805889622	1	NA	NA	0	NA	NA	0	4	NA	1	1	3.70E-17	1	0.010558179	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	121328302	G	A	-	-	-	-	-	-	42	1	2.4	34	9	26.5	27	3	11.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	1.057884232	1.057884232	1	1.195684211	1.195684211	1	NA	NA	0	NA	NA	1	4	NA	0.189842622	1	9.15E-14	1	0.000334187	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	121335978	C	T	ENSG00000157837	CCDS9208.1	r.?	-	-	intronic	36	0	0	32	5	15.6	29	2	6.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.357713288	3	2	2	1	1	0.642286712	1	3	NA	1	NA	0.357713288	NA	0.834557764	0.834557764	1	0.674263158	0.674263158	1	NA	NA	0	NA	NA	1	4	NA	1	1	0.000000562	1	0.009279585	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	121384936	A	C	-	-	-	-	-	-	60	0	0	49	14	28.6	31	5	16.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.713716567	0.856858283	2	1.734280702	1.734280702	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.50E-21	1	0.000000476	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	46965722	C	G	GPT2	CCDS10725.1	r.?	-	-	downstream	34	0	0	84	29	34.5	47	15	31.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	9.313373224	5.626372055	7	3	2	2	0.686626776	0.373627945	7	3	3	3	0.313373224	0.626372055	3.900359271	0.975089818	4	3.9550583	1.318352767	3	NA	NA	1	NA	NA	0	4	NA	1	1	4.21E-45	1	1.97E-23	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	121461739	C	A	-	-	-	-	-	-	35	0	0	39	6	15.4	28	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	0.614770459	0.614770459	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	4.43E-08	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	121472511	C	T	-	-	-	-	-	-	45	0	0	24	10	41.7	24	2	8.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	1.664670659	1.664670659	1	0.894070175	0.894070175	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.80E-17	1	0.006413403	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	121479645	T	G	-	-	-	-	-	-	50	0	0	44	18	40.9	43	9	20.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.450734531	1.225367265	2	2.251333333	1.125666667	2	NA	NA	1	NA	NA	1	4	NA	1	1	3.47E-30	1	9.45E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	121568526	C	A	P2RX7	CCDS9213.1	r.?	-	-	upstream	43	0	0	53	10	18.9	47	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.357713288	3	2	2	1	1	0.642286712	1	3	NA	1	NA	0.357713288	NA	1.011098829	1.011098829	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	1.57E-13	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	121629224	C	T	PRDM5	CCDS3716.1	r.?	-	-	intronic	45	0	0	41	17	41.5	21	2	9.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.792797466	3.272960587	2	2	1	1	0.207202534	0.727039413	3	3	1	1	0.792797466	0.272960587	2.400697575	0.859603177	2.792797466	0.954264589	0.954264589	1	NA	NA	0	NA	NA	0	4	NA	1	1	1.03E-28	1	0.004928472	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	49075857	G	T	-	-	-	-	-	-	57	0	0	40	14	35	35	7	20	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	5.626372055	2	3	2	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	2.097205589	1.048602794	2	2.479660376	1.044671041	2.373627945	NA	NA	0	NA	NA	0	4	NA	1	1	1.25E-22	1	4.65E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	51189934	C	T	SALL1	CCDS10747.1	r.?	-	-	upstream	13	0	0	42	6	14.3	10	3	30	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	5.626372055	2	3	2	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	0.856858283	0.856858283	1	3.719490564	1.239830188	3	NA	NA	0	NA	NA	0	4	NA	1	1	7.02E-08	1	0.0000146	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	121745551	G	C	SNTB1	CCDS6334.1	r.?	-	-	intronic	42	0	0	41	22	53.7	41	10	24.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	2.680712575	1.340356287	2	2.291872734	1.145936367	2	NA	NA	1	NA	NA	0	4	NA	1	1	5.33E-40	1	9.51E-15	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	121829295	G	A	-	-	-	-	-	-	30	0	0	46	9	19.6	33	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.357713288	3	2	2	1	1	0.642286712	1	3	NA	1	NA	0.357713288	NA	1.048546934	1.048546934	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	1.82E-12	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	121934553	G	T	CASR	CCDS3010.1	r.?	-	-	intronic	59	0	0	38	7	18.4	33	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.351371459	5	2	3	1	2	0.648628541	1	2	NA	2	NA	0.351371459	NA	0.983183287	0.983183287	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	8.61E-10	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	122091012	C	G	-	-	-	-	-	-	48	0	0	62	16	25.8	43	8	18.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	4	4	0	0	1	1	NA	NA	NA	NA	NA	NA	1.54594012	0.77297006	2	2.003578947	1.001789474	2	NA	NA	1	NA	NA	1	4	NA	1	1	3.36E-23	1	4.85E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	122136735	T	C	-	-	-	-	-	-	41	0	0	71	10	14.1	37	5	13.5	0	0	NA	1	0	0	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0.703874251	0.703874251	1	1.268044341	1.268044341	1	0	0	1	NA	NA	0	4	NA	1	1	3.42E-12	1	0.00000119	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	122185361	G	A	KPNA1	CCDS3013.1	r.?	-	-	intronic	53	0	0	45	9	20	31	3	9.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.351371459	5	2	3	1	2	0.648628541	1	2	NA	2	NA	0.351371459	NA	1.068677485	1.068677485	1	1.141877193	1.141877193	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.47E-12	1	0.000505952	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	122220408	G	T	-	-	-	-	-	-	56	0	0	33	7	21.2	30	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	0.846307385	0.846307385	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	2.98E-10	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	59512406	C	A	-	-	-	-	-	-	55	0	0	54	6	11.1	43	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	5.626372055	2	3	2	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	0.665113772	0.665113772	1	0	0	1	NA	NA	0	NA	NA	0	3	NA	1	1	0.000000329	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	122236409	T	C	RHOF	CCDS9222.1	r.?	-	-	upstream	17	0	0	47	7	14.9	30	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.357713288	3	2	2	1	1	0.642286712	1	3	NA	1	NA	0.357713288	NA	0.797109659	0.797109659	1	0	0	1	NA	NA	1	NA	NA	0	3	NA	1	1	4.12E-09	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	122247707	G	A	-	-	-	-	-	-	46	0	0	33	14	42.4	18	4	22.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	4	4	0	0	1	1	NA	NA	NA	NA	NA	NA	2.54061477	0.84687159	3	2.391368421	2.391368421	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.57E-24	1	0.00000181	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	122291077	C	T	-	-	-	-	-	-	47	0	0	25	7	28	21	2	9.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.117764471	1.117764471	1	0.833333333	0.833333333	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.47E-11	1	0.004928472	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	60716667	T	G	-	-	-	-	-	-	50	0	0	46	18	39.1	38	6	15.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	5.626372055	2	3	2	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	2.342878244	1.171439122	2	1.958931697	1.958931697	1	NA	NA	0	NA	NA	0	4	NA	1	1	9.41E-30	1	3.76E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	122439829	C	G	-	-	-	-	-	-	48	0	0	29	10	34.5	18	7	38.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.377245509	1.377245509	1	3.412280702	1.706140351	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.79E-16	1	2.37E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	122487214	C	A	CADPS2	CCDS47691.1	r.?	-	-	intronic	57	0	0	48	20	41.7	45	10	22.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.498670659	1.249335329	2	2.391368421	1.195684211	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.40E-33	1	2.66E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	122504797	C	G	TSN	ENST00000455432	r.?	-	-	intronic	41	0	0	25	9	36	27	1	3.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.437125749	1.437125749	1	0.324561404	0.324561404	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.71E-15	1	0.126579904	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	122512510	C	A	GRIA3	ENST00000264357	r.?	-	-	intronic	32	0	0	53	9	17	26	1	3.8	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	4.402297358	3.60351971	4	3	0	0	0.597702642	0.39648029	5	4	0	0	0.402297358	0.60351971	1.087033265	1.087033265	1	0.394267082	NA	0	NA	NA	0	NA	NA	0	NA	NA	1	1	7.10E-12	1	0.122190858	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	122551756	C	T	-	-	-	-	-	-	55	0	0	37	8	21.6	32	5	15.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.277661109	2	1	1	1	1	0.722338891	NA	2	NA	1	NA	0.277661109	1.078275449	1.078275449	1	1.411736186	1.411736186	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.33E-11	1	0.000000562	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	122564498	G	A	-	-	-	-	-	-	40	0	0	27	15	55.6	40	5	12.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.219560878	1.109780439	2	1.096491228	1.096491228	1	NA	NA	1	NA	NA	1	4	NA	1	1	5.01E-28	1	0.00000178	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	62640311	C	A	-	-	-	-	-	-	45	0	0	41	10	24.4	37	3	8.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	5.626372055	2	3	2	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	1.462051896	1.462051896	1	1.004262452	1.004262452	1	NA	NA	0	NA	NA	1	4	NA	1	1	9.51E-15	1	0.000855237	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	64025037	G	T	-	-	-	-	-	-	50	0	0	42	9	21.4	33	1	3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	5.626372055	2	3	2	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	1.282291417	1.282291417	1	0.371949056	0.371949056	1	NA	NA	0	NA	NA	0	4	NA	1	1	7.51E-13	1	0.15245715	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	122685007	G	C	TMEM155	CCDS3721.1	r.390c>g	c.?	p.?	5'UTR variant	46	0	0	41	6	14.6	25	1	4	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.277661109	2	1	1	1	1	0.722338891	NA	2	NA	1	NA	0.277661109	0.728834331	0.728834331	1	0.361983637	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	6.05E-08	1	0.117779757	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	122725451	A	G	-	-	-	-	-	-	37	0	0	22	5	22.7	22	2	9.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.906187625	0.906187625	1	0.798245614	0.798245614	1	NA	NA	1	NA	NA	1	4	NA	1	1	7.67E-08	1	0.005403392	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	122838725	C	T	-	-	-	-	-	-	40	0	0	22	10	45.5	21	6	28.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.816367265	0.908183633	2	2.50877193	1.254385965	2	NA	NA	1	NA	NA	1	4	NA	1	1	5.98E-18	1	7.95E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	122865821	A	C	-	-	-	-	-	-	41	0	0	25	6	24	29	8	27.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	0.958083832	0.958083832	1	2.973052632	0.991017544	3	NA	NA	0	NA	NA	1	4	NA	1	1	2.55E-09	1	1.53E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	64928744	A	C	-	-	-	-	-	-	42	0	0	49	6	12.2	32	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	5.626372055	2	3	2	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	0.731025948	0.731025948	1	0	0	1	NA	NA	0	NA	NA	0	3	NA	1	1	0.000000182	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	122894855	G	T	CSNK1G3	CCDS43355.1	r.?	-	-	intronic	50	0	0	34	8	23.5	29	6	20.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.938123752	0.938123752	1	1.815789474	1.815789474	1	NA	NA	1	NA	NA	1	4	NA	1	1	6.32E-12	1	6.72E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	122953707	C	G	ENSG00000166250	CCDS8441.1	r.?	-	-	intronic	56	0	0	55	21	38.2	38	10	26.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	4	4	0	0	1	1	NA	NA	NA	NA	NA	NA	2.2889501	1.14447505	2	2.833017544	0.944339181	3	NA	NA	1	NA	NA	1	4	NA	1	1	3.41E-34	1	4.06E-15	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	123007848	C	T	-	-	-	-	-	-	52	0	0	49	8	16.3	37	1	2.7	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.277661109	2	1	1	1	1	0.722338891	NA	2	NA	1	NA	0.277661109	0.813698603	0.813698603	1	0.244338955	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	1.47E-10	1	0.169281299	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	123061589	G	C	ENSG00000166250	CCDS8441.1	r.?	-	-	intronic	45	0	0	51	30	58.8	35	13	37.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	4	4	0	0	1	1	NA	NA	NA	NA	NA	NA	3.523305389	0.880826347	4	3.996385965	0.999096491	4	NA	NA	1	NA	NA	1	4	NA	1	1	9.63E-56	1	1.63E-21	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	123089314	G	A	-	-	-	-	-	-	49	0	0	39	5	12.8	26	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	4	4	0	0	1	1	NA	NA	NA	NA	NA	NA	0.766978044	0.766978044	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.00000156	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	123145447	G	T	-	-	-	-	-	-	36	0	0	34	9	26.5	35	5	14.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.057884232	1.057884232	1	1.254385965	1.254385965	1	NA	NA	1	NA	NA	1	4	NA	1	1	9.15E-14	1	0.000000895	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	123240981	G	A	-	-	-	-	-	-	28	0	0	49	27	55.1	24	7	29.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	4	4	0	0	1	1	NA	NA	NA	NA	NA	NA	3.301600798	1.100533599	3	3.145403509	1.048467836	3	NA	NA	1	NA	NA	1	4	NA	1	1	3.33E-49	1	2.51E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	123256066	C	A	-	-	-	-	-	-	64	0	0	33	6	18.2	39	4	10.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.726546906	0.726546906	1	0.903508772	0.903508772	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.54E-08	1	0.0000447	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	123269330	G	A	ASB15	CCDS34742.1	r.1803g>a	c.1282G>A	p.D428N	missense	52	0	0	48	5	10.4	37	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.623169661	0.623169661	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.00000447	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	123286819	G	T	KIAA1109	CCDS43267.1	r.?	-	-	downstream	34	0	0	45	9	20	27	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.277661109	2	1	1	1	1	0.722338891	NA	2	NA	1	NA	0.277661109	0.998403194	0.998403194	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	1.47E-12	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	123326231	C	T	ADAD1	CCDS34058.1	r.?	-	-	intronic	44	0	0	35	8	22.9	24	5	20.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.277661109	2	1	1	1	1	0.722338891	NA	2	NA	1	NA	0.277661109	1.143171657	1.143171657	1	1.882314914	1.882314914	1	NA	NA	1	NA	NA	0	4	NA	1	1	8.15E-12	1	0.000000123	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	65134571	G	T	CDH11	CCDS10803.1	r.?	-	-	intronic	19	0	0	38	13	34.2	31	3	9.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	5.626372055	2	3	2	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	2.049269461	1.024634731	2	1.202635282	1.202635282	1	NA	NA	0	NA	NA	1	4	NA	1	1	5.88E-21	1	0.000505952	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	123491083	C	G	SH2D1A	CCDS48162.1	r.?	-	-	intronic	49	0	0	53	4	7.5	34	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	4.402297358	3.60351971	4	3	0	0	0.597702642	0.39648029	5	4	0	0	0.402297358	0.60351971	0.479573499	0.479573499	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	0.000150502	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	123644386	C	T	-	-	-	-	-	-	33	0	0	54	9	16.7	37	3	8.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.000666667	1.000666667	1	0.872526316	0.872526316	1	NA	NA	1	NA	NA	1	4	NA	1	1	8.48E-12	1	0.000855237	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	123661025	A	T	-	-	-	-	-	-	48	0	0	44	10	22.7	41	1	2.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	4	4	0	0	1	1	NA	NA	NA	NA	NA	NA	1.360187625	1.360187625	1	0.258526316	0.258526316	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.08E-14	1	0.18577148	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	67359954	C	G	KCTD19	CCDS42179.1	r.?	-	-	intronic	18	0	0	44	16	36.4	27	6	22.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	5.626372055	2	3	2	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	2.181093812	1.090546906	2	2.752423017	0.917474339	3	NA	NA	0	NA	NA	1	4	NA	1	1	5.57E-26	1	4.23E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	123765910	T	A	-	-	-	-	-	-	33	0	0	62	10	16.1	45	2	4.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6.469821537	3	3	2	3	1	0.530178463	1	4	NA	3	NA	0.469821537	NA	1.362355838	1.362355838	1	0.429964912	0.429964912	1	NA	NA	1	NA	NA	0	4	NA	1	1	8.29E-13	1	0.021467209	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	123767374	C	A	-	-	-	-	-	-	50	0	0	20	10	50	30	6	20	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.996007984	0.998003992	2	1.754385965	1.754385965	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.72E-18	1	8.37E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	123880151	G	C	-	-	-	-	-	-	39	0	0	43	7	16.3	26	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.976698603	0.976698603	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	2.15E-09	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	123953195	A	G	TACC2	CCDS7626.1	r.?	-	-	intronic	35	0	0	27	12	44.4	25	5	20	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.77245509	0.886227545	2	1.754385965	1.754385965	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.96E-21	1	0.000000153	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	123975214	G	T	-	-	-	-	-	-	40	0	0	41	9	22	31	2	6.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.318243513	1.318243513	1	0.700175439	0.700175439	1	NA	NA	1	NA	NA	1	4	NA	1	1	5.92E-13	1	0.010558179	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	123979392	G	T	-	-	-	-	-	-	46	0	0	39	7	17.9	26	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.714570858	0.714570858	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	1.04E-09	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	124078472	A	T	KALRN	CCDS3027.1	r.?	-	-	intronic	54	0	0	42	18	42.9	32	7	21.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.351371459	5	2	3	1	2	0.648628541	1	2	NA	2	NA	0.351371459	NA	2.292313206	1.146156603	2	2.578052632	0.859350877	3	NA	NA	0	NA	NA	1	4	NA	1	1	1.20E-30	1	2.36E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	124181381	G	T	TCTN2	CCDS9253.1	r.?	-	-	intronic	35	0	0	46	7	15.2	45	2	4.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6.469821537	3	3	2	3	1	0.530178463	1	4	NA	3	NA	0.469821537	NA	1.286199301	1.286199301	1	0.429964912	0.429964912	1	NA	NA	0	NA	NA	0	4	NA	1	1	3.53E-09	1	0.021467209	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	124240016	A	C	KALRN	CCDS3027.1	r.?	-	-	downstream	30	0	0	29	4	13.8	15	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.351371459	5	2	3	1	2	0.648628541	1	2	NA	2	NA	0.351371459	NA	0.737387465	0.737387465	1	0	0	1	NA	NA	0	NA	NA	1	4	NA	1	1	0.0000134	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	124247604	G	A	NKAIN2	CCDS34526.1	r.?	-	-	intronic	26	0	0	22	9	40.9	26	3	11.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.632734531	1.632734531	1	1.00877193	1.00877193	1	NA	NA	1	NA	NA	1	4	NA	1	1	9.16E-16	1	0.000298167	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	124253780	C	T	DNAH10	CCDS9255.2	r.?	-	-	intronic	29	0	0	57	29	50.9	30	4	13.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	3	4	2	2	1	1	1	NA	NA	NA	NA	NA	NA	4.067936128	1.016984032	4	1.299666667	1.299666667	1	NA	NA	1	NA	NA	0	4	NA	1	1	2.45E-51	1	0.0000154	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	124289684	G	T	-	-	-	-	-	-	14	0	0	59	5	8.5	16	1	6.2	0	0	NA	2	0	0	0	0	NA	1	FALSE	FALSE	4.402297358	3.60351971	4	3	0	0	0.597702642	0.39648029	5	4	0	0	0.402297358	0.60351971	0.543516633	0.543516633	1	0.643277871	NA	0	0	0	1	NA	NA	0	NA	NA	1	1	0.0000125	1	0.077068876	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	124302577	T	A	KALRN	CCDS3028.1	r.?	-	-	upstream	54	0	0	29	6	20.7	32	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.351371459	5	2	3	1	2	0.648628541	1	2	NA	2	NA	0.351371459	NA	1.106081197	1.106081197	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	6.72E-09	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	124344730	C	A	KALRN	CCDS3028.1	r.?	-	-	intronic	44	0	0	39	10	25.6	30	3	10	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.351371459	5	2	3	1	2	0.648628541	1	2	NA	2	NA	0.351371459	NA	1.367907181	1.367907181	1	1.177192982	1.177192982	1	NA	NA	0	NA	NA	1	4	NA	1	1	5.44E-15	1	0.000458697	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	124496621	C	A	-	-	-	-	-	-	40	1	2.5	19	7	36.8	28	6	21.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.469061876	1.469061876	1	1.877192982	1.877192982	1	NA	NA	1	NA	NA	1	4	NA	0.181679879	1	3.73E-12	1	5.36E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	124526624	C	T	POT1	CCDS5793.1	r.?	-	-	intronic	57	0	0	64	7	10.9	35	1	2.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.653129741	0.653129741	1	0.312385965	0.312385965	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.78E-08	1	0.16091139	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	124623291	C	T	MUC13	CCDS33839.1	r.?	-	-	downstream	52	0	0	50	21	42	38	10	26.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.351371459	5	2	3	1	2	0.648628541	1	2	NA	2	NA	0.351371459	NA	2.244222719	1.12211136	2	3.096017544	1.032005848	3	NA	NA	0	NA	NA	1	4	NA	1	1	2.79E-35	1	4.06E-15	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	124629607	A	G	-	-	-	-	-	-	55	0	0	47	11	23.4	44	12	27.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.402131737	1.402131737	1	2.940736842	1.470368421	2	NA	NA	1	NA	NA	1	4	NA	1	1	7.21E-16	1	4.44E-18	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	124686070	A	C	-	-	-	-	-	-	53	0	0	49	20	40.8	43	9	20.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.402297358	3.60351971	4	3	0	0	0.597702642	0.39648029	5	4	0	0	0.402297358	0.60351971	2.608879837	1.085993717	2.402297358	2.168468953	1.084234476	2	NA	NA	0	NA	NA	0	4	NA	1	1	2.35E-33	1	9.45E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	124756119	C	A	-	-	-	-	-	-	34	0	0	50	9	18	42	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.078562874	1.078562874	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	4.07E-12	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	124793772	G	T	-	-	-	-	-	-	38	0	0	43	10	23.3	28	1	3.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.351371459	5	2	3	1	2	0.648628541	1	2	NA	2	NA	0.351371459	NA	1.24500927	1.24500927	1	0.423789474	0.423789474	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.61E-14	1	0.130947004	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	124816471	G	C	-	-	-	-	-	-	36	0	0	48	6	12.5	41	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	4.402297358	3.60351971	4	3	0	0	0.597702642	0.39648029	5	4	0	0	0.402297358	0.60351971	0.799289166	0.799289166	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	0.00000016	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	124861784	C	T	-	-	-	-	-	-	33	0	0	26	9	34.6	19	0	0	0	0	NA	1	1	100	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	1.381237525	1.381237525	1	0	0	1	3.992015968	3.992015968	1	NA	NA	1	4	NA	1	1	5.65E-15	0.005	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	124938129	C	T	-	-	-	-	-	-	32	0	0	56	10	17.9	28	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.072570858	1.072570858	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	2.82E-13	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	124962387	G	A	-	-	-	-	-	-	43	0	0	45	14	31.1	36	5	13.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.863516966	0.931758483	2	1.497298246	1.497298246	1	NA	NA	1	NA	NA	1	4	NA	1	1	8.81E-22	1	0.00000104	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	124981502	C	G	CNTNAP5	CCDS46401.1	r.?	-	-	intronic	41	0	0	24	10	41.7	19	5	26.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.664670659	0.832335329	2	2.307017544	1.153508772	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.80E-17	1	3.43E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	125016909	A	C	-	-	-	-	-	-	42	0	0	51	10	19.6	35	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.17443513	1.17443513	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	1.04E-13	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	125084103	T	A	ZNF148	CCDS3031.1	r.?	-	-	intronic	46	0	0	48	9	18.8	31	2	6.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.351371459	5	2	3	1	2	0.648628541	1	2	NA	2	NA	0.351371459	NA	1.004556836	1.004556836	1	0.765175439	0.765175439	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.75E-12	1	0.010558179	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	125130914	C	A	CNTNAP5	CCDS46401.1	r.?	-	-	intronic	41	0	0	27	7	25.9	30	2	6.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.033932136	1.033932136	1	0.587719298	0.587719298	1	NA	NA	1	NA	NA	1	4	NA	1	1	6.36E-11	1	0.009909649	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	77194720	C	T	-	-	-	-	-	-	39	0	0	38	6	15.8	27	4	14.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	5.626372055	2	3	2	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	0.946738523	0.946738523	1	1.834948678	1.834948678	1	NA	NA	0	NA	NA	1	4	NA	1	1	3.76E-08	1	0.00001	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	125151872	G	T	-	-	-	-	-	-	45	1	2.2	40	15	37.5	25	6	24	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.402297358	3.60351971	4	3	0	0	0.597702642	0.39648029	5	4	0	0	0.402297358	0.60351971	2.397867497	0.99815599	2.402297358	2.490107888	0.956439038	2.60351971	NA	NA	1	NA	NA	0	4	NA	0.201934322	1	1.09E-24	1	2.55E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	125160232	T	C	-	-	-	-	-	-	44	0	0	47	15	31.9	34	9	26.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.402297358	3.60351971	4	3	0	0	0.597702642	0.39648029	5	4	0	0	0.402297358	0.60351971	2.039785951	1.019892975	2	2.749494127	1.056068105	2.60351971	NA	NA	0	NA	NA	0	4	NA	1	1	1.97E-23	1	9.15E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	79370382	G	T	-	-	-	-	-	-	47	0	0	60	7	11.7	31	6	19.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	5.626372055	3	3	3	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	0.935065868	0.935065868	1	2.405270565	1.01333091	2.373627945	NA	NA	1	NA	NA	0	4	NA	1	1	2.39E-08	1	1.03E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	125352113	G	A	TMEM65	CCDS6348.1	r.?	-	-	intronic	40	0	0	42	17	40.5	40	7	17.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	2.021766467	1.010883234	2	1.643761182	1.643761182	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.73E-28	1	1.26E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	125501699	T	G	-	-	-	-	-	-	60	0	0	30	8	26.7	22	5	22.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.065868263	1.065868263	1	1.99122807	1.99122807	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.07E-12	1	7.67E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	125528097	C	A	CNTNAP5	CCDS46401.1	r.?	-	-	intronic	55	0	0	40	13	32.5	43	0	0	2	0	0	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.29740519	1.29740519	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	1.30E-20	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	125556158	C	A	-	-	-	-	-	-	39	0	0	49	4	8.2	36	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.491345309	0.491345309	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.000110643	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	125587401	G	T	CNTNAP5	CCDS46401.1	r.?	-	-	intronic	46	0	0	34	16	47.1	24	9	37.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.880239521	0.94011976	2	3.289473684	1.644736842	2	NA	NA	1	NA	NA	1	4	NA	1	1	3.09E-28	1	2.39E-15	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	125626916	C	T	-	-	-	-	-	-	37	0	0	41	14	34.1	27	8	29.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	4	4	0	0	1	1	NA	NA	NA	NA	NA	NA	2.043277445	1.021638723	2	3.188491228	1.062830409	3	NA	NA	1	NA	NA	1	4	NA	1	1	1.90E-22	1	7.97E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	125675111	A	C	ENSG00000230519	ENST00000420567	r.?	-	-	intronic	40	0	0	54	8	14.8	40	3	7.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.886818363	0.886818363	1	0.807894737	0.807894737	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.31E-10	1	0.001075403	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	125785912	C	T	CHST15	CCDS7638.1	r.?	-	-	intronic	36	0	0	32	16	50	30	7	23.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.996007984	0.998003992	2	2.043859649	1.021929825	2	NA	NA	1	NA	NA	1	4	NA	1	1	8.51E-29	1	1.44E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	125806451	G	A	RABGAP1	CCDS6848.2	r.?	-	-	intronic	35	0	0	44	12	27.3	27	2	7.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	1.089820359	1.089820359	1	0.797122807	0.797122807	1	NA	NA	0	NA	NA	1	4	NA	1	1	4.44E-18	1	0.00807567	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	125825981	T	C	ALDH1L1	CCDS3034.1	r.2803+3a>g	c.2453+3A>G	p.?	splice region	22	0	0	47	9	19.1	34	3	8.8	307	0	0	60	8	13.3	42	2	4.8	0.066182322	TRUE	TRUE	3.351371459	5	2	3	1	2	0.648628541	1	2	NA	2	NA	0.351371459	NA	1.020586999	1.020586999	1	1.035929825	1.035929825	1	0.710670528	0.710670528	1	0.565052632	0.565052632	1	4	3	1	1	2.24E-12	7.93E-10	0.000666058	0.018854633	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	X	125916146	T	C	-	-	-	-	-	-	41	0	0	51	11	21.6	32	1	3.1	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	4.402297358	3.60351971	4	3	0	0	0.597702642	0.39648029	5	4	0	0	0.402297358	0.60351971	1.381171678	1.381171678	1	0.321638936	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	1.94E-15	1	0.14819814	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	125984272	A	T	ZNF572	CCDS6354.1	r.?	-	-	upstream	44	0	0	42	22	52.4	35	11	31.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	2.615816367	1.307908184	2	2.949377207	1.474688604	2	NA	NA	1	NA	NA	0	4	NA	1	1	1.11E-39	1	1.82E-17	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	125989269	A	T	-	-	-	-	-	-	38	0	0	52	10	19.2	29	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.351371459	5	2	3	1	2	0.648628541	1	2	NA	2	NA	0.351371459	NA	1.025930386	1.025930386	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	1.28E-13	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	126097359	G	C	-	-	-	-	-	-	40	0	0	30	7	23.3	27	5	18.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	0.930139721	0.930139721	1	1.992807018	1.992807018	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.44E-10	1	0.00000023	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	126136887	C	T	-	-	-	-	-	-	61	0	0	28	10	35.7	29	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.425149701	1.425149701	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	1.18E-16	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	126144955	T	G	GRM8	CCDS5794.1	r.?	-	-	intronic	50	0	0	53	5	9.4	34	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.563249501	0.563249501	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.00000734	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	126244417	C	A	DENND1A	CCDS35133.1	r.?	-	-	intronic	33	0	0	36	13	36.1	27	6	22.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	1.441117764	1.441117764	1	2.391368421	1.195684211	2	NA	NA	0	NA	NA	1	4	NA	1	1	2.53E-21	1	4.23E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	126269630	G	A	-	-	-	-	-	-	53	0	0	49	9	18.4	28	3	10.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	3	4	2	2	1	1	1	NA	NA	NA	NA	NA	NA	1.470530938	1.470530938	1	1.045596491	1.045596491	1	NA	NA	1	NA	NA	0	4	NA	1	1	3.35E-12	1	0.000372895	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	126320221	C	A	-	-	-	-	-	-	23	0	0	29	5	17.2	24	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	6	3	4	2	2	1	1	1	NA	NA	NA	NA	NA	NA	1.374626747	1.374626747	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	0.000000336	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	126327932	G	A	-	-	-	-	-	-	45	0	0	42	33	78.6	30	12	40	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.402297358	3.60351971	4	3	0	0	0.597702642	0.39648029	5	4	0	0	0.402297358	0.60351971	5.025930274	1.141660789	4.402297358	4.150179814	1.15170171	3.60351971	NA	NA	1	NA	NA	0	4	NA	1	1	4.97E-68	1	1.94E-20	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	126328441	A	G	TRMT11	CCDS35496.1	r.?	-	-	intronic	54	0	0	33	11	33.3	31	4	12.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.329341317	1.329341317	1	1.131578947	1.131578947	1	NA	NA	1	NA	NA	1	4	NA	1	1	8.54E-18	1	0.0000177	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	126333935	T	A	-	-	-	-	-	-	66	0	0	65	48	73.8	38	15	39.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.402297358	3.60351971	4	3	0	0	0.597702642	0.39648029	5	4	0	0	0.402297358	0.60351971	4.719003234	1.071941046	4.402297358	4.098302566	1.137305439	3.60351971	NA	NA	1	NA	NA	0	4	NA	1	1	6.10E-96	1	4.24E-25	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	126402407	T	G	FAT4	CCDS3732.3	r.?	-	-	intronic	60	0	0	41	5	12.2	38	0	0	93	0	0	236	27	11.4	267	0	0	1	FALSE	FALSE	3	2.277661109	2	1	1	1	1	0.722338891	NA	2	NA	1	NA	0.277661109	0.609025948	0.609025948	1	0	NA	0	0.56908982	0.56908982	1	0	NA	0	NA	NA	1	1	0.00000202	6.22E-28	1	1	YES	1_1	0_0	somatic	custom.pulldown.HiSeq
PD9852b	3	126405684	G	A	-	-	-	-	-	-	46	0	0	38	6	15.8	39	2	5.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.351371459	5	2	3	1	2	0.648628541	1	2	NA	2	NA	0.351371459	NA	0.844255213	0.844255213	1	0.600368421	0.600368421	1	NA	NA	0	NA	NA	1	4	NA	1	1	3.76E-08	1	0.016387522	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	126500564	G	A	CHCHD6	CCDS3041.1	r.?	-	-	intronic	26	0	0	32	9	28.1	36	2	5.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.351371459	5	2	3	1	2	0.648628541	1	2	NA	2	NA	0.351371459	NA	1.501491867	1.501491867	1	0.65922807	0.65922807	1	NA	NA	0	NA	NA	1	4	NA	1	1	4.94E-14	1	0.014070883	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	126502383	T	G	-	-	-	-	-	-	41	0	0	32	4	12.5	42	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.499001996	0.499001996	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.0000201	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	126537375	G	T	GRM8	CCDS5794.1	r.?	-	-	intronic	59	0	0	51	22	43.1	44	6	13.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.582558882	1.291279441	2	1.464982456	1.464982456	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.24E-37	1	9.37E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	126583593	G	T	GRM8	CCDS5794.1	r.?	-	-	intronic	50	0	0	44	7	15.9	38	5	13.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.952730539	0.952730539	1	1.421894737	1.421894737	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.55E-09	1	0.00000137	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	126585291	A	G	-	-	-	-	-	-	50	0	0	40	16	40	25	2	8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	4	4	0	0	1	1	NA	NA	NA	NA	NA	NA	2.396806387	1.198403194	2	0.861754386	0.861754386	1	NA	NA	1	NA	NA	1	4	NA	1	1	8.56E-27	1	0.006948068	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	126600643	C	A	-	-	-	-	-	-	55	0	0	42	9	21.4	35	1	2.9	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.277661109	2	1	1	1	1	0.722338891	NA	2	NA	1	NA	0.277661109	1.068291417	1.068291417	1	0.262438137	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	7.51E-13	1	0.16091139	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	126637842	G	A	-	-	-	-	-	-	44	0	0	33	19	57.6	21	7	33.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	3	4	2	2	1	1	1	NA	NA	NA	NA	NA	NA	4.603401198	1.150850299	4	3.254052632	1.627026316	2	NA	NA	1	NA	NA	0	4	NA	1	1	1.46E-35	1	8.54E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	126650063	G	C	CHCHD6	CCDS3041.1	r.?	-	-	intronic	18	0	0	57	9	15.8	21	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.351371459	5	2	3	1	2	0.648628541	1	2	NA	2	NA	0.351371459	NA	0.844255213	0.844255213	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	1.42E-11	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	126750755	C	T	GRM8	CCDS5794.1	r.?	-	-	intronic	45	0	0	41	16	39	31	5	16.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.336886228	1.168443114	2	1.734280702	1.734280702	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.40E-26	1	0.000000476	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	126753843	C	A	GRM8	CCDS5794.1	r.?	-	-	intronic	37	0	0	46	8	17.4	43	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.042610778	1.042610778	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	8.61E-11	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	126757056	C	T	-	-	-	-	-	-	49	0	0	33	19	57.6	42	9	21.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	3	4	2	2	1	1	1	NA	NA	NA	NA	NA	NA	4.603401198	1.150850299	4	2.091192982	1.045596491	2	NA	NA	1	NA	NA	0	4	NA	1	1	1.46E-35	1	7.51E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	126800138	G	A	GRM8	CCDS5794.1	r.?	-	-	intronic	57	0	0	48	5	10.4	32	5	15.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.623169661	0.623169661	1	1.680421053	1.680421053	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.00000447	1	0.000000562	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	88046086	A	G	BANP	CCDS10966.2	r.?	-	-	intronic	42	0	0	35	9	25.7	43	12	27.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	5.626372055	3	3	3	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	2.053948104	1.026974052	2	3.459126224	1.153042075	3	NA	NA	1	NA	NA	0	4	NA	1	1	1.23E-13	1	3.24E-18	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	126929701	A	G	ENSG00000214043	ENST00000397346	r.?	-	-	intronic	49	0	0	49	15	30.6	31	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	6	3	4	2	2	1	1	1	NA	NA	NA	NA	NA	NA	2.445556886	0.815185629	3	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	4.10E-23	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	126950516	G	A	ENSG00000214043	ENST00000397346	r.985g>a	c.?	p.?	3'UTR variant	57	0	0	44	6	13.6	34	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	6	3	4	2	2	1	1	1	NA	NA	NA	NA	NA	NA	1.086914172	1.086914172	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	9.37E-08	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	126957548	C	G	ENSG00000214043	ENST00000397346	r.?	-	-	downstream	45	0	0	53	25	47.2	38	6	15.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	3	4	2	2	1	1	1	NA	NA	NA	NA	NA	NA	3.772231537	0.943057884	4	1.543964912	1.543964912	1	NA	NA	1	NA	NA	0	4	NA	1	1	2.35E-43	1	3.76E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	126962532	G	A	-	-	-	-	-	-	21	0	0	20	8	40	25	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	1.596806387	1.596806387	1	0	0	1	NA	NA	0	NA	NA	1	4	NA	1	1	4.66E-14	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	127147131	C	A	-	-	-	-	-	-	46	0	0	39	7	17.9	32	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	6	3	4	2	2	1	1	1	NA	NA	NA	NA	NA	NA	1.430570858	1.430570858	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	1.04E-09	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	127211370	C	A	-	-	-	-	-	-	15	0	0	36	13	36.1	9	1	11.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	3	4	2	2	1	1	1	NA	NA	NA	NA	NA	NA	2.885117764	0.961705921	3	1.084684211	1.084684211	1	NA	NA	1	NA	NA	0	4	NA	1	1	2.53E-21	1	0.044110422	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	127304435	G	C	SND1	CCDS34747.1	r.?	-	-	intronic	35	0	0	49	20	40.8	33	6	18.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.444742515	1.222371257	2	1.960491228	1.960491228	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.35E-33	1	1.54E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	127337868	A	T	NR6A1	CCDS35137.1	r.?	-	-	intronic	39	0	0	19	7	36.8	27	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	1.469061876	1.469061876	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	3.73E-12	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	127340166	G	A	SND1	CCDS34747.1	r.?	-	-	intronic	46	0	0	59	8	13.6	28	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.814914172	0.814914172	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	6.90E-10	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	127375992	G	T	C10orf122	CCDS44493.1	r.?	-	-	upstream	50	0	0	31	16	51.6	31	3	9.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.05988024	1.02994012	2	0.850877193	0.850877193	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.27E-29	1	0.000505952	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	127432145	T	A	GYPC	CCDS2136.1	r.?	-	-	intronic	24	0	0	31	6	19.4	26	1	3.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.774451098	0.774451098	1	0.333333333	0.333333333	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.03E-08	1	0.122190858	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	127447033	C	T	-	-	-	-	-	-	20	0	0	39	14	35.9	36	9	25	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	4	4	0	0	1	1	NA	NA	NA	NA	NA	NA	2.151133733	1.075566866	2	2.692982456	0.897660819	3	NA	NA	1	NA	NA	1	4	NA	1	1	8.19E-23	1	1.63E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	127508657	G	C	-	-	-	-	-	-	21	0	0	37	5	13.5	35	5	14.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0.673922156	0.673922156	1	1.343187709	1.343187709	1	NA	NA	1	NA	NA	0	4	NA	1	1	0.00000119	1	0.000000895	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	127572541	C	T	FAM84B	CCDS6358.1	r.?	-	-	upstream	45	0	0	42	11	26.2	50	12	24	2	0	0	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.307908184	1.307908184	1	2.25430105	1.127150525	2	NA	NA	1	NA	NA	0	4	NA	1	1	1.81E-16	1	2.49E-17	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	58820825	T	A	AC106793.1	ENST00000500117	r.?	-	-	intronic	40	0	0	40	7	17.5	29	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	5.626372055	2	3	2	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	1.048602794	1.048602794	1	0	0	1	NA	NA	0	NA	NA	0	3	NA	1	1	1.26E-09	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	127863250	C	T	-	-	-	-	-	-	44	0	0	45	9	20	38	4	10.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.198403194	1.198403194	1	1.131052632	1.131052632	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.47E-12	1	0.0000403	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	127903639	C	T	-	-	-	-	-	-	34	0	0	40	11	27.5	25	3	12	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	6	2	3	2	3	1	1	NA	NA	NA	NA	NA	NA	1.647804391	1.647804391	1	1.532631579	1.532631579	1	NA	NA	0	NA	NA	1	4	NA	1	1	9.88E-17	1	0.00026475	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	127960784	G	A	FBN2	ENST00000508053	r.?	-	-	intronic	40	0	0	31	20	64.5	28	8	28.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.574850299	1.28742515	2	2.50877193	1.254385965	2	NA	NA	1	NA	NA	1	4	NA	1	1	7.66E-39	1	1.11E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	127998663	A	G	-	-	-	-	-	-	39	0	0	47	22	46.8	29	8	27.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	2.336263473	1.168131737	2	2.592446208	1.296223104	2	NA	NA	1	NA	NA	0	4	NA	1	1	3.14E-38	1	1.53E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	128021039	G	A	-	-	-	-	-	-	49	0	0	51	21	41.2	36	6	16.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	4	4	0	0	1	1	NA	NA	NA	NA	NA	NA	2.468710579	0.822903526	3	1.798912281	1.798912281	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.73E-35	1	2.68E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	128079878	C	T	-	-	-	-	-	-	54	0	0	34	7	20.6	33	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.277661109	2	1	1	1	1	0.722338891	NA	2	NA	1	NA	0.277661109	1.028355289	1.028355289	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	3.73E-10	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	17	7333952	C	T	TMEM102	CCDS11104.1	r.?	-	-	upstream	40	0	0	38	6	15.8	29	0	0	1	0	0	0	0	NA	0	0	NA	1	TRUE	FALSE	2	3.601202326	2	3	0	0	1	0.398797674	NA	3	NA	1	NA	0.601202326	0.630738523	0.630738523	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	3.76E-08	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	17	17523504	C	T	-	-	-	-	-	-	52	0	0	25	13	52	31	9	29	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	3.601202326	2	3	0	0	1	0.398797674	NA	3	NA	1	NA	0.601202326	2.075848303	1.037924152	2	3.008208324	1.002736108	3	NA	NA	0	NA	NA	1	4	NA	1	1	6.00E-24	1	3.57E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	128163509	T	C	-	-	-	-	-	-	51	0	0	35	16	45.7	33	9	27.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	2.281351297	1.140675649	2	2.564267445	1.282133722	2	NA	NA	1	NA	NA	0	4	NA	1	1	5.66E-28	1	6.76E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	128178946	T	C	-	-	-	-	-	-	11	0	0	57	20	35.1	33	7	21.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.103197605	1.051598802	2	2.283649123	1.141824561	2	NA	NA	1	NA	NA	1	4	NA	1	1	9.67E-32	1	2.98E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	128196184	C	A	-	-	-	-	-	-	50	0	0	37	9	24.3	27	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	6	3	4	2	2	1	1	1	NA	NA	NA	NA	NA	NA	1.94205988	0.97102994	2	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	2.14E-13	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	128254588	C	T	IWS1	CCDS2146.1	r.?	-	-	intronic	42	0	0	47	14	29.8	32	8	25	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	6	2	3	2	3	1	1	NA	NA	NA	NA	NA	NA	1.785620758	0.892810379	2	3.192982456	1.064327485	3	NA	NA	0	NA	NA	1	4	NA	1	1	1.79E-21	1	3.69E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	128338365	G	T	ETS1	CCDS8475.1	r.?	-	-	intronic	52	0	0	50	9	18	33	8	24.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	4	4	0	0	1	1	NA	NA	NA	NA	NA	NA	1.078562874	1.078562874	1	2.606807018	0.868935673	3	NA	NA	1	NA	NA	1	4	NA	1	1	4.07E-12	1	4.85E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	128339355	A	G	-	-	-	-	-	-	49	0	0	47	6	12.8	30	3	10	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	3	4	2	2	1	1	1	NA	NA	NA	NA	NA	NA	1.022978044	1.022978044	1	0.977192982	0.977192982	1	NA	NA	1	NA	NA	0	4	NA	1	1	0.000000141	1	0.000458697	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	128549193	G	A	PBX3	CCDS6865.1	r.?	-	-	intronic	46	0	0	24	4	16.7	29	6	20.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	0.666666667	0.666666667	1	2.229789474	1.114894737	2	NA	NA	0	NA	NA	1	4	NA	1	1	0.00000613	1	6.72E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	128564857	G	A	FLI1	CCDS44768.1	r.?	-	-	intronic	10	0	0	32	7	21.9	9	1	11.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	4	4	0	0	1	1	NA	NA	NA	NA	NA	NA	1.312251497	1.312251497	1	1.195684211	1.195684211	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.36E-10	1	0.044110422	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	128613982	A	G	-	-	-	-	-	-	31	0	0	29	14	48.3	19	4	21.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	3	4	2	2	1	1	1	NA	NA	NA	NA	NA	NA	3.860143713	0.965035928	4	2.061877193	2.061877193	1	NA	NA	1	NA	NA	0	4	NA	1	1	4.41E-25	1	0.00000228	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	17	37139566	C	A	-	-	-	-	-	-	47	0	0	32	6	18.8	26	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	3.601202326	2	3	0	0	1	0.398797674	NA	3	NA	1	NA	0.601202326	0.750499002	0.750499002	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	1.27E-08	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	128776540	C	G	-	-	-	-	-	-	20	0	0	29	17	58.6	21	5	23.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	3	4	2	2	1	1	1	NA	NA	NA	NA	NA	NA	4.683321357	1.170830339	4	2.325719298	1.162859649	2	NA	NA	1	NA	NA	0	4	NA	1	1	3.74E-32	1	5.95E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	128787857	G	A	APLN	CCDS48165.1	r.?	-	-	intronic	21	0	0	46	19	41.3	13	1	7.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.402297358	3.60351971	4	3	0	0	0.597702642	0.39648029	5	4	0	0	0.402297358	0.60351971	2.640851404	1.099302464	2.402297358	0.798909614	0.798909614	1	NA	NA	1	NA	NA	0	4	NA	1	1	6.97E-32	1	0.063085307	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	128833478	G	A	-	-	-	-	-	-	28	0	0	47	35	74.5	27	8	29.6	2	0	0	0	0	NA	0	0	NA	1	TRUE	FALSE	4.402297358	3.60351971	4	3	0	0	0.597702642	0.39648029	5	4	0	0	0.402297358	0.60351971	4.763763428	1.082108508	4.402297358	3.071133062	1.023711021	3	NA	NA	1	NA	NA	0	4	NA	1	1	1.43E-70	1	7.97E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	128967236	C	A	COPG	CCDS33851.1	r.?	-	-	upstream	19	0	0	50	11	22	21	2	9.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.351371459	5	2	3	1	2	0.648628541	1	2	NA	2	NA	0.351371459	NA	1.175545234	1.175545234	1	1.118333333	1.118333333	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.52E-15	1	0.004928472	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	128971697	G	A	PVT1	CCDS3617.1	r.?	-	-	intronic	17	0	0	35	18	51.4	28	9	32.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	2.565896208	1.282948104	2	3.015127655	1.507563827	2	NA	NA	1	NA	NA	0	4	NA	1	1	1.60E-32	1	1.24E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	128977025	G	A	-	-	-	-	-	-	20	0	0	33	5	15.2	27	1	3.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	6	2	3	2	3	1	1	NA	NA	NA	NA	NA	NA	0.910786427	0.910786427	1	0.472561404	0.472561404	1	NA	NA	0	NA	NA	1	4	NA	1	1	0.00000066	1	0.126579904	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	128987249	A	G	ADAMTS19	CCDS4146.1	r.?	-	-	intronic	39	0	0	56	17	30.4	37	8	21.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.213572854	1.213572854	1	1.894736842	0.947368421	2	NA	NA	1	NA	NA	1	4	NA	1	1	6.22E-26	1	1.33E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	129015795	A	T	TMEM132C	CCDS45009.1	r.?	-	-	intronic	39	0	0	42	4	9.5	32	3	9.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	3	4	2	2	1	1	1	NA	NA	NA	NA	NA	NA	0.759241517	0.759241517	1	0.918561404	0.918561404	1	NA	NA	1	NA	NA	0	4	NA	1	1	0.0000601	1	0.000556213	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	129016481	G	A	C3orf37	CCDS33852.1	r.?	-	-	intronic	47	0	0	55	11	20	35	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.351371459	5	2	3	1	2	0.648628541	1	2	NA	2	NA	0.351371459	NA	1.068677485	1.068677485	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	4.77E-15	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	17	47269496	T	G	-	-	-	-	-	-	19	0	0	32	6	18.8	20	2	10	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.750499002	0.750499002	1	0.877192982	0.877192982	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.27E-08	1	0.004473894	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	129089254	G	A	-	-	-	-	-	-	24	0	0	57	19	33.3	33	4	12.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.329341317	1.329341317	1	1.061403509	1.061403509	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.01E-29	1	0.0000228	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	129104245	T	A	-	-	-	-	-	-	50	0	0	51	6	11.8	42	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.471057884	0.471057884	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.000000232	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	129263986	C	A	FAM125B	CCDS35142.1	r.?	-	-	intronic	22	0	0	44	8	18.2	12	1	8.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	0.726546906	0.726546906	1	0.894070175	0.894070175	1	NA	NA	0	NA	NA	1	4	NA	1	1	5.90E-11	1	0.058377193	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	129319490	G	A	-	-	-	-	-	-	48	0	0	48	11	22.9	46	5	10.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	6	2	3	2	3	1	1	NA	NA	NA	NA	NA	NA	1.372171657	1.372171657	1	1.392140351	1.392140351	1	NA	NA	0	NA	NA	1	4	NA	1	1	9.31E-16	1	0.00000361	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	129341790	A	G	CHSY3	CCDS34223.1	r.?	-	-	intronic	56	0	0	28	4	14.3	25	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.570858283	0.570858283	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.0000116	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	129360752	C	T	-	-	-	-	-	-	39	0	0	35	12	34.3	29	7	24.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	1.369261477	1.369261477	1	2.596035088	0.865345029	3	NA	NA	0	NA	NA	1	4	NA	1	1	1.83E-19	1	1.11E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	129401019	A	G	-	-	-	-	-	-	48	0	0	48	19	39.6	35	3	8.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.277661109	2	1	1	1	1	0.722338891	NA	2	NA	1	NA	0.277661109	1.976838323	0.988419162	2	0.77826482	0.77826482	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.92E-31	1	0.000725791	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	129430479	C	T	LAMA2	CCDS5138.1	r.?	-	-	intronic	47	0	0	33	10	30.3	24	4	16.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.209580838	1.209580838	1	1.464912281	1.464912281	1	NA	NA	1	NA	NA	1	4	NA	1	1	8.14E-16	1	0.00000613	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	129439307	C	G	LMX1B	CCDS6866.1	r.?	-	-	intronic	11	0	0	27	5	18.5	10	2	20	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	0.738522954	0.738522954	1	2.154385965	2.154385965	1	NA	NA	0	NA	NA	1	4	NA	1	1	0.00000023	1	0.001095391	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	129613985	T	A	-	-	-	-	-	-	33	0	0	46	7	15.2	26	1	3.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.910786427	0.910786427	1	0.409333333	0.409333333	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.53E-09	1	0.122190858	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	17	56435689	G	A	RNF43	CCDS11607.1	r.1936c>u	c.1448C>T	p.T483M	missense	15	0	0	33	21	63.6	7	2	28.6	198	0	0	71	25	35.2	68	12	17.6	4.34E-12	TRUE	TRUE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.538922156	1.269461078	2	2.50877193	2.50877193	1	1.405189621	0.70259481	2	1.543859649	1.543859649	1	4	3	1	1	1.60E-40	2.38E-39	0.000516315	1.37E-15	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	10	129619987	C	G	-	-	-	-	-	-	53	0	0	29	8	27.6	33	4	12.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.101796407	1.101796407	1	1.061403509	1.061403509	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.53E-12	1	0.0000228	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	129633815	G	A	-	-	-	-	-	-	38	0	0	36	8	22.2	31	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.886227545	0.886227545	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	1.04E-11	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	129658045	G	A	-	-	-	-	-	-	16	0	0	62	32	51.6	13	4	30.8	152	0	0	164	85	51.8	133	35	26.3	5.86E-39	TRUE	TRUE	4.402297358	3.60351971	4	3	0	0	0.597702642	0.39648029	5	4	0	0	0.402297358	0.60351971	3.299465676	0.96977581	3.402297358	3.195638457	1.065212819	3	3.312254303	0.973534631	3.402297358	2.728743228	1.04809778	2.60351971	4	3	1	1	9.07E-57	2.28E-148	0.000000431	2.76E-49	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	4	129763178	A	G	PHF17	CCDS34062.1	r.?	-	-	intronic	43	0	0	36	14	38.9	33	5	15.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.277661109	2	1	1	1	1	0.722338891	NA	2	NA	1	NA	0.277661109	1.941894212	0.970947106	2	1.375537822	1.375537822	1	NA	NA	1	NA	NA	0	4	NA	1	1	2.09E-23	1	0.00000066	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	129783815	G	C	LAMA2	CCDS5138.1	r.?	-	-	intronic	42	0	0	25	11	44	30	7	23.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.756487026	0.878243513	2	2.043859649	1.021929825	2	NA	NA	1	NA	NA	1	4	NA	1	1	2.04E-19	1	1.44E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	129790939	T	A	TMEM132D	CCDS9266.1	r.?	-	-	intronic	48	0	0	39	4	10.3	37	6	16.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	3	4	2	2	1	1	1	NA	NA	NA	NA	NA	NA	0.823177645	0.823177645	1	1.583052632	1.583052632	1	NA	NA	1	NA	NA	0	4	NA	1	1	0.0000447	1	3.18E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	129869627	T	C	-	-	-	-	-	-	51	0	0	39	7	17.9	49	2	4.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0.893570858	0.893570858	1	0.385109763	0.385109763	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.04E-09	1	0.025168485	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	129890131	A	C	TMEM132D	CCDS9266.1	r.?	-	-	intronic	30	0	0	34	5	14.7	32	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	6	3	4	2	2	1	1	1	NA	NA	NA	NA	NA	NA	1.174826347	1.174826347	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	0.000000771	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	129893562	C	T	-	-	-	-	-	-	29	0	0	40	7	17.5	30	4	13.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0.873602794	0.873602794	1	1.249258499	1.249258499	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.26E-09	1	0.0000154	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	129910768	C	T	-	-	-	-	-	-	15	0	0	40	7	17.5	9	3	33.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	4	4	0	0	1	1	NA	NA	NA	NA	NA	NA	1.048602794	1.048602794	1	3.587052632	0.896763158	4	NA	NA	1	NA	NA	1	4	NA	1	1	1.26E-09	1	0.0000103	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	17	64342014	G	T	PRKCA	CCDS11664.1	r.?	-	-	intronic	39	0	0	21	12	57.1	39	10	25.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.279441118	1.139720559	2	2.245614035	1.122807018	2	NA	NA	1	NA	NA	1	4	NA	1	1	6.88E-23	1	5.44E-15	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	130139014	C	A	-	-	-	-	-	-	46	0	0	44	9	20.5	32	5	15.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.023363273	1.023363273	1	1.465295683	1.465295683	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.18E-12	1	0.000000562	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	130167129	T	C	TMEM132D	CCDS9266.1	r.?	-	-	intronic	30	0	0	29	13	44.8	19	6	31.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	3	4	2	2	1	1	1	NA	NA	NA	NA	NA	NA	3.580423154	0.895105788	4	3.087929825	1.543964912	2	NA	NA	1	NA	NA	0	4	NA	1	1	7.69E-23	1	4.01E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	130177250	C	G	-	-	-	-	-	-	46	0	0	32	25	78.1	36	14	38.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.402297358	3.60351971	4	3	0	0	0.597702642	0.39648029	5	4	0	0	0.402297358	0.60351971	4.993958707	1.134398316	4.402297358	4.036049869	1.120029913	3.60351971	NA	NA	0	NA	NA	0	4	NA	1	1	9.70E-52	1	2.09E-23	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	130290210	G	T	-	-	-	-	-	-	39	0	0	35	6	17.1	30	1	3.3	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.277661109	2	1	1	1	1	0.722338891	NA	2	NA	1	NA	0.277661109	0.853634731	0.853634731	1	0.298636501	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	2.24E-08	1	0.139615808	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	130300149	G	C	-	-	-	-	-	-	47	0	0	43	10	23.3	32	1	3.1	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.277661109	2	1	1	1	1	0.722338891	NA	2	NA	1	NA	0.277661109	1.163139721	1.163139721	1	0.280537319	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	1.61E-14	1	0.14819814	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	130317125	A	G	-	-	-	-	-	-	47	0	0	42	6	14.3	42	3	7.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0.713858283	0.713858283	1	0.666897394	0.666897394	1	NA	NA	1	NA	NA	0	4	NA	1	1	7.02E-08	1	0.001240292	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	130354561	T	A	-	-	-	-	-	-	52	0	0	49	8	16.3	33	3	9.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	4	4	0	0	1	1	NA	NA	NA	NA	NA	NA	0.976698603	0.976698603	1	0.980245614	0.980245614	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.47E-10	1	0.000609557	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	130393067	G	A	COL6A6	CCDS46911.1	r.?	-	-	intronic	53	0	0	31	10	32.3	37	11	29.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.351371459	5	2	3	1	2	0.648628541	1	2	NA	2	NA	0.351371459	NA	1.725914139	1.046878721	1.648628541	3.496263158	1.165421053	3	NA	NA	0	NA	NA	1	4	NA	1	1	3.94E-16	1	3.70E-17	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	130397264	C	T	-	-	-	-	-	-	53	0	0	43	5	11.6	26	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.277661109	2	1	1	1	1	0.722338891	NA	2	NA	1	NA	0.277661109	0.579073852	0.579073852	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	0.00000257	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	17	66599312	G	A	FAM20A	CCDS11679.1	r.?	-	-	upstream	42	0	0	27	16	59.3	30	8	26.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.367265469	1.183632735	2	2.342105263	1.171052632	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.89E-30	1	2.07E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	17	71943831	G	A	-	-	-	-	-	-	14	0	0	28	10	35.7	18	4	22.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5.714370929	6.213584959	5	5	0	1	0.285629071	0.786415041	5	5	1	2	0.714370929	0.213584959	2.751180122	0.917060041	3	2.882784282	1.034585386	2.786415041	NA	NA	0	NA	NA	1	4	NA	1	1	1.18E-16	1	0.00000181	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	130552301	C	A	-	-	-	-	-	-	10	0	0	26	13	50	18	5	27.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	6	2	3	2	3	1	1	NA	NA	NA	NA	NA	NA	2.996007984	1.498003992	2	3.550596491	1.183532164	3	NA	NA	0	NA	NA	1	4	NA	1	1	1.20E-23	1	2.54E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	130552790	C	A	AC013300.1	ENST00000446592	r.?	-	-	intronic	28	0	0	48	22	45.8	33	9	27.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	2.286343313	1.143171657	2	2.564267445	1.282133722	2	NA	NA	1	NA	NA	0	4	NA	1	1	5.76E-38	1	6.76E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	130572467	C	G	-	-	-	-	-	-	18	0	0	49	11	22.4	22	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.342211577	1.342211577	1	0	0	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.19E-15	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	130612679	C	T	-	-	-	-	-	-	20	0	0	36	5	13.9	14	2	14.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	3	4	2	2	1	1	1	NA	NA	NA	NA	NA	NA	1.11089022	1.11089022	1	1.397385965	1.397385965	1	NA	NA	1	NA	NA	0	4	NA	1	1	0.00000104	1	0.002185852	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	130705535	T	A	-	-	-	-	-	-	55	0	0	42	35	83.3	29	11	37.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.402297358	3.60351971	4	3	0	0	0.597702642	0.39648029	5	4	0	0	0.402297358	0.60351971	5.326463	1.209928037	4.402297358	3.932295374	1.091237371	3.60351971	NA	NA	0	NA	NA	0	4	NA	1	1	7.59E-74	1	1.56E-18	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	130788177	G	T	SNX19	CCDS31721.1	r.?	-	-	upstream	54	0	0	41	5	12.2	37	1	2.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	4	4	0	0	1	1	NA	NA	NA	NA	NA	NA	0.731025948	0.731025948	1	0.290842105	0.290842105	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.00000202	1	0.169281299	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	130788540	C	T	-	-	-	-	-	-	45	0	0	44	12	27.3	35	2	5.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.277661109	2	1	1	1	1	0.722338891	NA	2	NA	1	NA	0.277661109	1.362820359	1.362820359	1	0.515826683	0.515826683	1	NA	NA	1	NA	NA	0	4	NA	1	1	4.44E-18	1	0.013332991	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	130839147	G	A	SLC25A25	CCDS35151.1	r.?	-	-	intronic	34	0	0	29	10	34.5	33	7	21.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	1.377245509	1.377245509	1	2.283649123	1.141824561	2	NA	NA	0	NA	NA	1	4	NA	1	1	1.79E-16	1	2.98E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	61768947	C	G	CDH8	CCDS10802.1	r.?	-	-	intronic	56	0	0	50	7	14	34	6	17.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	5.626372055	2	3	2	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	0.838882236	0.838882236	1	2.182101131	0.919310516	2.373627945	NA	NA	0	NA	NA	0	4	NA	1	1	6.46E-09	1	1.86E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	130916561	C	T	RIMBP2	CCDS31925.1	r.?	-	-	intronic	48	0	0	46	18	39.1	22	4	18.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	3	4	2	2	1	1	1	NA	NA	NA	NA	NA	NA	3.124878244	1.041626081	3	1.778491228	1.778491228	1	NA	NA	1	NA	NA	0	4	NA	1	1	9.41E-30	1	0.00000425	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	130933012	A	T	SMPD4	CCDS42751.1	r.?	-	-	intronic	50	0	0	40	13	32.5	29	6	20.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	6	2	3	2	3	1	1	NA	NA	NA	NA	NA	NA	1.94740519	0.973702595	2	2.643789474	0.881263158	3	NA	NA	0	NA	NA	1	4	NA	1	1	1.30E-20	1	6.72E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	131065873	C	T	-	-	-	-	-	-	42	0	0	36	7	19.4	32	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	0.774451098	0.774451098	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	5.74E-10	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	131318625	T	C	-	-	-	-	-	-	35	1	2.9	47	19	40.4	45	8	17.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.420774451	1.210387226	2	1.917403509	0.958701754	2	NA	NA	1	NA	NA	1	4	NA	0.16091139	1	1.16E-31	1	7.14E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	131424924	C	T	-	-	-	-	-	-	20	0	0	37	13	35.1	19	2	10.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	6	2	3	2	3	1	1	NA	NA	NA	NA	NA	NA	2.103197605	1.051598802	2	1.341052632	1.341052632	1	NA	NA	0	NA	NA	1	4	NA	1	1	3.89E-21	1	0.004039874	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	131462654	G	C	-	-	-	-	-	-	59	0	0	55	26	47.3	34	7	20.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.834223553	1.417111776	2	2.219017544	1.109508772	2	NA	NA	1	NA	NA	1	4	NA	1	1	4.61E-45	1	3.73E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	131535961	T	A	-	-	-	-	-	-	31	0	0	42	12	28.6	33	5	15.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	6	2	3	2	3	1	1	NA	NA	NA	NA	NA	NA	1.713716567	0.856858283	2	1.941333333	1.941333333	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.35E-18	1	0.00000066	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	131562963	A	G	-	-	-	-	-	-	29	0	0	42	13	31	34	6	17.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	6	2	3	2	3	1	1	NA	NA	NA	NA	NA	NA	1.85752495	0.928762475	2	2.247859649	1.123929825	2	NA	NA	0	NA	NA	1	4	NA	1	1	2.72E-20	1	1.86E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	131583028	C	G	P4HA2	ENST00000439698	r.?	-	-	intronic	34	0	0	34	10	29.4	29	2	6.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.173652695	1.173652695	1	0.605263158	0.605263158	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.15E-15	1	0.009279585	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	131602825	G	A	ARHGEF4	ENST00000409359	r.?	-	-	intronic	27	0	0	39	12	30.8	27	6	22.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	6	2	3	2	3	1	1	NA	NA	NA	NA	NA	NA	1.845540918	0.922770459	2	2.835368421	0.945122807	3	NA	NA	0	NA	NA	1	4	NA	1	1	8.43E-19	1	4.23E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	131623968	A	C	CPNE4	CCDS3072.1	r.?	-	-	intronic	46	0	0	58	12	20.7	36	9	25	87	0	0	220	32	14.5	184	17	9.2	8.58E-12	TRUE	TRUE	3.351371459	5	2	3	1	2	0.648628541	1	2	NA	2	NA	0.351371459	NA	1.106081197	1.106081197	1	2.942982456	0.980994152	3	0.774791177	0.774791177	1	1.083017544	1.083017544	1	4	3	1	1	1.76E-16	3.01E-36	1.63E-13	1.44E-16	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	10	131703950	C	T	EBF3	CCDS31314.1	r.?	-	-	intronic	31	0	0	21	10	47.6	19	5	26.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.900199601	0.9500998	2	2.307017544	1.153508772	2	NA	NA	1	NA	NA	1	4	NA	1	1	3.28E-18	1	3.43E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	131764665	C	T	-	-	-	-	-	-	41	0	0	28	8	28.6	27	5	18.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.141716567	1.141716567	1	1.622807018	1.622807018	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.11E-12	1	0.00000023	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	17	75868657	G	A	-	-	-	-	-	-	24	0	0	35	21	60	15	3	20	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5.714370929	6.213584959	5	5	0	1	0.285629071	0.786415041	5	5	1	2	0.714370929	0.213584959	4.623832138	0.924766428	5	2.597102957	2.597102957	1	NA	NA	0	NA	NA	0	4	NA	1	1	1.03E-39	1	0.0000544	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	285447	C	T	-	-	-	-	-	-	34	0	0	39	13	33.3	34	2	5.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	3	2	3	0	0	1	1	NA	NA	NA	NA	NA	NA	1.329341317	1.329341317	1	0.57654386	0.57654386	1	NA	NA	0	NA	NA	1	4	NA	1	1	8.79E-21	1	0.012612579	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	131942529	G	C	IER5L	CCDS43888.1	r.?	-	-	upstream	25	0	0	32	9	28.1	24	4	16.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	1.121756487	1.121756487	1	1.798912281	1.798912281	1	NA	NA	0	NA	NA	1	4	NA	1	1	4.94E-14	1	0.00000613	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	17	31746612	T	C	ACCN1	CCDS42296.1	r.?	-	-	intronic	61	0	0	34	11	32.4	36	5	13.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	3.601202326	2	3	0	0	1	0.398797674	NA	3	NA	1	NA	0.601202326	1.293413174	1.293413174	1	1.441865369	1.441865369	1	NA	NA	0	NA	NA	0	4	NA	1	1	1.26E-17	1	0.00000104	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	131944212	G	A	-	-	-	-	-	-	54	0	0	36	7	19.4	29	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.277661109	2	1	1	1	1	0.722338891	NA	2	NA	1	NA	0.277661109	0.968451098	0.968451098	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	5.74E-10	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	132013837	C	T	OPCML	CCDS8491.1	r.?	-	-	intronic	53	0	0	48	17	35.4	34	8	23.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	4	4	0	0	1	1	NA	NA	NA	NA	NA	NA	2.121173653	1.060586826	2	2.531403509	0.84380117	3	NA	NA	1	NA	NA	1	4	NA	1	1	2.80E-27	1	6.32E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	1162689	C	T	-	-	-	-	-	-	54	0	0	39	9	23.1	39	5	12.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	3	2	3	0	0	1	1	NA	NA	NA	NA	NA	NA	0.922155689	0.922155689	1	1.250807018	1.250807018	1	NA	NA	0	NA	NA	1	4	NA	1	1	3.62E-13	1	0.00000156	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	132064489	A	T	-	-	-	-	-	-	34	0	0	25	13	52	21	5	23.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.075848303	1.037924152	2	2.087719298	2.087719298	1	NA	NA	1	NA	NA	1	4	NA	1	1	6.00E-24	1	5.95E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	4867538	A	G	-	-	-	-	-	-	57	0	0	41	11	26.8	36	6	16.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	3	2	3	0	0	1	1	NA	NA	NA	NA	NA	NA	1.069860279	1.069860279	1	1.631912281	1.631912281	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.34E-16	1	2.68E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	132172610	T	G	DNAJC13	CCDS33857.1	r.?	-	-	intronic	63	0	0	42	10	23.8	34	3	8.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.351371459	5	2	3	1	2	0.648628541	1	2	NA	2	NA	0.351371459	NA	1.271726208	1.271726208	1	1.035929825	1.035929825	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.24E-14	1	0.000666058	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	132213952	A	G	-	-	-	-	-	-	16	0	0	28	5	17.9	17	4	23.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	0.714570858	0.714570858	1	2.531403509	2.531403509	1	NA	NA	0	NA	NA	1	4	NA	1	1	0.000000279	1	0.00000141	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	132252395	A	G	AFF4	CCDS4164.1	r.?	-	-	intronic	36	0	0	21	13	61.9	32	5	15.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.471057884	1.235528942	2	1.368421053	1.368421053	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.39E-25	1	0.000000562	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	132307067	C	T	PLXNA4	CCDS43646.1	r.?	-	-	intronic	51	0	0	55	10	18.2	40	5	12.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.090546906	1.090546906	1	1.346491228	1.346491228	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.33E-13	1	0.00000178	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	132309443	G	A	ENSG00000183715	CCDS8492.1	r.?	-	-	intronic	42	0	0	53	7	13.2	34	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	4	4	0	0	1	1	NA	NA	NA	NA	NA	NA	0.790946108	0.790946108	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	9.85E-09	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	132345147	C	T	-	-	-	-	-	-	43	0	0	25	7	28	19	1	5.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	1.117764471	1.117764471	1	0.570912281	0.570912281	1	NA	NA	0	NA	NA	1	4	NA	1	1	3.47E-11	1	0.090843738	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	132352878	C	A	-	-	-	-	-	-	47	0	0	37	6	16.2	34	1	2.9	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0.808706587	0.808706587	1	0.27239471	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	3.18E-08	1	0.156694864	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	5145856	T	C	ENSG00000231824	ENST00000434239	r.?	-	-	upstream	43	0	0	29	13	44.8	26	11	42.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	3	2	3	0	0	1	1	NA	NA	NA	NA	NA	NA	1.788423154	0.894211577	2	4.133526316	1.377842105	3	NA	NA	0	NA	NA	1	4	NA	1	1	7.69E-23	1	3.52E-19	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	20297014	T	C	-	-	-	-	-	-	60	0	0	51	31	60.8	39	15	38.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	5	4	5	0	0	1	1	NA	NA	NA	NA	NA	NA	3.643145709	0.910786427	4	4.532192982	0.906438596	5	NA	NA	0	NA	NA	1	4	NA	1	1	3.28E-58	1	6.85E-25	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	132460934	C	A	-	-	-	-	-	-	48	0	0	30	5	16.7	28	2	7.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.277661109	2	1	1	1	1	0.722338891	NA	2	NA	1	NA	0.277661109	0.833666667	0.833666667	1	0.642520956	0.642520956	1	NA	NA	1	NA	NA	0	4	NA	1	1	0.000000401	1	0.008668191	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	132488763	A	C	-	-	-	-	-	-	53	0	0	58	5	8.6	36	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0.429313373	0.429313373	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	0.0000115	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	132555493	G	A	ENSG00000183715	CCDS8492.1	r.?	-	-	intronic	42	0	0	41	14	34.1	29	5	17.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	4	4	0	0	1	1	NA	NA	NA	NA	NA	NA	2.043277445	1.021638723	2	1.85277193	1.85277193	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.90E-22	1	0.000000336	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	132556576	C	G	-	-	-	-	-	-	49	0	0	36	5	13.9	26	3	11.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0.69389022	0.69389022	1	1.08018592	1.08018592	1	NA	NA	1	NA	NA	0	4	NA	1	1	0.00000104	1	0.000298167	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	132564016	A	G	EP400	CCDS31929.1	r.11276a>g	c.?	p.?	3'UTR variant	27	0	0	44	22	50	40	14	35	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	3	4	2	2	1	1	1	NA	NA	NA	NA	NA	NA	3.996007984	0.999001996	4	3.420175439	1.710087719	2	NA	NA	1	NA	NA	0	4	NA	1	1	4.51E-39	1	1.25E-22	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	132653730	G	C	-	-	-	-	-	-	66	0	0	54	39	72.2	38	6	15.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.402297358	3.60351971	4	3	0	0	0.597702642	0.39648029	5	4	0	0	0.402297358	0.60351971	4.616694221	1.048701132	4.402297358	1.639321027	1.639321027	1	NA	NA	0	NA	NA	0	4	NA	1	1	1.46E-77	1	3.76E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	132674083	C	T	FSTL4	CCDS34238.1	r.?	-	-	intronic	18	0	0	19	4	21.1	30	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.842315369	0.842315369	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.00000228	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	132730297	C	A	ENSG00000183715	CCDS8492.1	r.?	-	-	intronic	62	0	0	51	10	19.6	41	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	4	4	0	0	1	1	NA	NA	NA	NA	NA	NA	1.17443513	1.17443513	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	1.04E-13	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	132742264	G	A	ENSG00000183715	CCDS8492.1	r.?	-	-	intronic	31	0	0	49	6	12.2	26	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	4	4	0	0	1	1	NA	NA	NA	NA	NA	NA	0.731025948	0.731025948	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.000000182	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	132762821	A	G	GPC3	CCDS14638.1	r.?	-	-	intronic	45	0	0	58	15	25.9	35	1	2.9	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	4.402297358	3.60351971	4	3	0	0	0.597702642	0.39648029	5	4	0	0	0.402297358	0.60351971	1.656127151	0.828063576	2	0.300888037	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	7.42E-22	1	0.16091139	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	132764583	A	T	-	-	-	-	-	-	75	0	0	43	15	34.9	31	5	16.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	6	2	3	2	3	1	1	NA	NA	NA	NA	NA	NA	2.091213573	1.045606786	2	2.056280702	2.056280702	1	NA	NA	0	NA	NA	1	4	NA	1	1	4.05E-24	1	0.000000476	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	132773631	A	T	-	-	-	-	-	-	120	0	0	82	10	12.2	82	4	4.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	6	2	3	2	3	1	1	NA	NA	NA	NA	NA	NA	0.731025948	0.731025948	1	0.625824561	0.625824561	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.51E-11	1	0.000801325	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	132839551	G	A	-	-	-	-	-	-	56	0	0	41	6	14.6	31	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.277661109	2	1	1	1	1	0.722338891	NA	2	NA	1	NA	0.277661109	0.728834331	0.728834331	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	6.05E-08	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	132839849	C	T	GALNT9	CCDS41866.1	r.?	-	-	intronic	20	0	0	50	24	48	16	2	12.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	3	4	2	2	1	1	1	NA	NA	NA	NA	NA	NA	3.836167665	0.959041916	4	1.221491228	1.221491228	1	NA	NA	1	NA	NA	0	4	NA	1	1	6.39E-42	1	0.002863359	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	132875706	G	A	GPC3	CCDS14638.1	r.?	-	-	intronic	47	0	0	53	40	75.5	33	11	33.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.402297358	3.60351971	4	3	0	0	0.597702642	0.39648029	5	4	0	0	0.402297358	0.60351971	4.827706561	1.096633455	4.402297358	3.455024695	0.958791674	3.60351971	NA	NA	1	NA	NA	0	4	NA	1	1	7.18E-81	1	8.54E-18	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	132899124	G	T	GALNT9	CCDS41866.1	r.?	-	-	intronic	16	0	0	46	12	26.1	13	3	23.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	3	4	2	2	1	1	1	NA	NA	NA	NA	NA	NA	2.085916168	1.042958084	2	2.257315789	2.257315789	1	NA	NA	1	NA	NA	0	4	NA	1	1	8.12E-18	1	0.0000344	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	132918709	G	A	ENSG00000183715	CCDS31722.1	r.?	-	-	intronic	55	0	0	39	14	35.9	38	7	18.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	4	4	0	0	1	1	NA	NA	NA	NA	NA	NA	2.151133733	1.075566866	2	1.982035088	0.991017544	2	NA	NA	1	NA	NA	1	4	NA	1	1	8.19E-23	1	8.61E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	132976346	G	T	-	-	-	-	-	-	48	0	0	42	11	26.2	27	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.277661109	2	1	1	1	1	0.722338891	NA	2	NA	1	NA	0.277661109	1.307908184	1.307908184	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	1.81E-16	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	132990603	G	T	-	-	-	-	-	-	40	0	0	32	12	37.5	31	7	22.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.497005988	1.497005988	1	1.98245614	0.99122807	2	NA	NA	1	NA	NA	1	4	NA	1	1	5.03E-20	1	1.85E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	133015772	T	C	VNN1	CCDS5159.1	r.?	-	-	intronic	43	0	0	26	22	84.6	24	4	16.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	3.377245509	1.688622754	2	1.464912281	1.464912281	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.50E-47	1	0.00000613	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	133061974	C	T	-	-	-	-	-	-	78	0	0	73	8	11	68	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	6	2	3	2	3	1	1	NA	NA	NA	NA	NA	NA	0.659121756	0.659121756	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	3.93E-09	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	133070082	C	G	FBRSL1	CCDS45010.1	r.?	-	-	intronic	11	0	0	35	18	51.4	13	4	30.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	3	4	2	2	1	1	1	NA	NA	NA	NA	NA	NA	4.107896208	1.026974052	4	3.009754386	1.504877193	2	NA	NA	1	NA	NA	0	4	NA	1	1	1.60E-32	1	0.000000431	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	133089093	C	T	TCERG1L	CCDS7662.2	r.?	-	-	intronic	39	0	0	28	9	32.1	19	5	26.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.281437126	1.281437126	1	2.307017544	1.153508772	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.24E-14	1	3.43E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	133099988	T	A	ENSG00000183715	CCDS31722.1	r.?	-	-	intronic	47	0	0	58	10	17.2	38	5	13.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	4	4	0	0	1	1	NA	NA	NA	NA	NA	NA	1.030626747	1.030626747	1	1.421894737	1.421894737	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.10E-13	1	0.00000137	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	133104952	A	T	OC90	CCDS47920.1	r.?	-	-	intronic	62	0	0	41	10	24.4	35	6	17.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.218051896	1.218051896	1	1.606189498	1.606189498	1	NA	NA	1	NA	NA	0	4	NA	1	1	9.51E-15	1	2.24E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	32377196	A	G	DTNA	CCDS45848.1	r.?	-	-	intronic	52	0	0	36	22	61.1	28	7	25	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.439121756	1.219560878	2	2.192982456	1.096491228	2	NA	NA	1	NA	NA	1	4	NA	1	1	8.46E-42	1	8.44E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	133233373	C	G	-	-	-	-	-	-	45	0	0	38	17	44.7	29	1	3.4	36	0	0	177	54	30.5	219	18	8.2	1.52E-11	FALSE	TRUE	3	2.277661109	2	1	1	1	1	0.722338891	NA	2	NA	1	NA	0.277661109	2.231431138	1.115715569	2	0.307686092	NA	0	1.52256487	0.761282435	2	0.742066457	0.742066457	1	NA	3	1	1	1.99E-29	3.79E-79	0.135292269	1.50E-16	YES	1_1	0_1	somatic	custom.pulldown.HiSeq
PD9852b	2	133239064	C	A	GPR39	CCDS2170.1	r.?	-	-	intronic	44	0	0	47	8	17	36	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	6	2	3	2	3	1	1	NA	NA	NA	NA	NA	NA	1.018642715	1.018642715	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	1.03E-10	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	133276132	C	T	HMCN2	ENST00000277491	r.?	-	-	intronic	26	0	0	37	13	35.1	13	1	7.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	1.401197605	1.401197605	1	0.829438596	0.829438596	1	NA	NA	0	NA	NA	1	4	NA	1	1	3.89E-21	1	0.063085307	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	133335025	A	G	ANKLE2	CCDS41869.1	r.?	-	-	intronic	26	0	0	48	26	54.2	48	12	25	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	3	4	2	2	1	1	1	NA	NA	NA	NA	NA	NA	4.331672655	1.082918164	4	2.442982456	1.221491228	2	NA	NA	1	NA	NA	0	4	NA	1	1	3.67E-47	1	1.44E-17	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	133482838	C	A	-	-	-	-	-	-	65	0	0	62	8	12.9	44	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	4	4	0	0	1	1	NA	NA	NA	NA	NA	NA	0.77297006	0.77297006	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	1.04E-09	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	133507354	A	G	EXOC4	CCDS5829.1	r.?	-	-	intronic	69	0	0	40	15	37.5	29	4	13.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.247005988	1.123502994	2	1.486526316	1.486526316	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.09E-24	1	0.0000134	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	133534593	A	T	EXOC4	CCDS5829.1	r.?	-	-	intronic	58	0	0	62	17	27.4	47	13	27.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.641812375	0.820906188	2	2.983824561	1.491912281	2	NA	NA	1	NA	NA	1	4	NA	1	1	4.56E-25	1	1.47E-19	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	133589773	G	C	-	-	-	-	-	-	20	0	0	59	7	11.9	23	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	4	4	0	0	1	1	NA	NA	NA	NA	NA	NA	0.7130499	0.7130499	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	2.12E-08	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	133688752	G	A	LRRC6	CCDS6365.1	r.?	-	-	upstream	49	0	0	49	14	28.6	40	9	22.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.427716567	1.427716567	1	2.113407234	1.056703617	2	NA	NA	1	NA	NA	0	4	NA	1	1	3.50E-21	1	4.64E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	133699714	T	C	CDKL3	CCDS47264.1	r.?	-	-	intronic	30	0	0	32	6	18.8	19	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.750499002	0.750499002	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	1.27E-08	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	133702397	A	G	ZNF268	CCDS9283.1	r.?	-	-	upstream	48	0	0	49	14	28.6	36	5	13.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	3	4	2	2	1	1	1	NA	NA	NA	NA	NA	NA	2.285716567	1.142858283	2	1.358298246	1.358298246	1	NA	NA	1	NA	NA	0	4	NA	1	1	3.50E-21	1	0.00000104	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	133721374	C	A	ABL1	CCDS35166.1	r.?	-	-	intronic	38	0	0	35	9	25.7	28	5	17.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	1.025948104	1.025948104	1	1.928175439	1.928175439	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.23E-13	1	0.000000279	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	133749623	C	G	EYA4	CCDS5166.1	r.?	-	-	intronic	63	0	0	41	9	22	25	3	12	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.878243513	0.878243513	1	1.052631579	1.052631579	1	NA	NA	1	NA	NA	1	4	NA	1	1	5.92E-13	1	0.00026475	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	133766026	T	G	TMEM71	CCDS6366.1	r.?	-	-	intronic	51	0	0	46	4	8.7	35	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0.434305389	0.434305389	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	0.0000862	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	133806769	G	A	PHF20L1	CCDS6367.2	r.522g>a	c.197G>A	p.R66Q	missense	43	0	0	32	9	28.1	27	0	0	149	0	0	291	53	18.2	326	24	7.4	7.69E-14	FALSE	TRUE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.402756487	1.402756487	1	0	NA	0	0.908546906	0.908546906	1	0.695076157	1.119301107	0.620991218	NA	3	1	1	4.94E-14	1.99E-64	1	1.96E-20	YES	1_1	0_1	somatic	custom.pulldown.HiSeq
PD9852b	12	133822079	C	G	-	-	-	-	-	-	32	0	0	46	14	30.4	23	2	8.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	3	4	2	2	1	1	1	NA	NA	NA	NA	NA	NA	2.429572854	0.809857618	3	0.850157895	0.850157895	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.26E-21	1	0.00589844	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	35432864	G	T	-	-	-	-	-	-	63	1	1.6	32	14	43.8	32	9	28.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.748502994	0.874251497	2	2.464912281	1.23245614	2	NA	NA	1	NA	NA	1	4	NA	0.27078753	1	2.65E-24	1	4.94E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	133854617	C	T	LRGUK	CCDS5830.1	r.?	-	-	intronic	55	0	0	51	16	31.4	37	8	21.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.881493014	0.940746507	2	2.326736842	1.163368421	2	NA	NA	1	NA	NA	1	4	NA	1	1	9.28E-25	1	1.33E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	133925123	C	G	-	-	-	-	-	-	55	0	0	46	14	30.4	26	4	15.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.277661109	2	1	1	1	1	0.722338891	NA	2	NA	1	NA	0.277661109	1.517572854	1.517572854	1	1.393637004	1.393637004	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.26E-21	1	0.00000856	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	134028220	G	T	NUP214	CCDS6940.1	r.?	-	-	intronic	53	0	0	41	16	39	36	1	2.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	1.556886228	1.556886228	1	0.301614035	0.301614035	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.40E-26	1	0.165106833	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	134029349	T	G	NCKAP5	CCDS46418.1	r.?	-	-	intronic	48	0	0	53	8	15.1	41	1	2.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	6	2	3	2	3	1	1	NA	NA	NA	NA	NA	NA	0.904794411	0.904794411	1	0.306526316	0.306526316	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.83E-10	1	0.18577148	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	134160463	T	C	-	-	-	-	-	-	32	0	0	31	19	61.3	28	11	39.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.447105788	1.223552894	2	3.447368421	1.723684211	2	NA	NA	1	NA	NA	1	4	NA	1	1	2.54E-36	1	9.70E-19	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	134207570	T	C	-	-	-	-	-	-	56	0	0	41	11	26.8	25	1	4	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.277661109	2	1	1	1	1	0.722338891	NA	2	NA	1	NA	0.277661109	1.337860279	1.337860279	1	0.361983637	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	1.34E-16	1	0.117779757	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	49032662	G	T	ENSG00000227115	ENST00000435144	r.?	-	-	intronic	44	0	0	27	5	18.5	26	3	11.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.738522954	0.738522954	1	1.00877193	1.00877193	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.00000023	1	0.000298167	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	134253937	G	A	PCBD2	CCDS43364.1	r.?	-	-	intronic	32	0	0	45	22	48.9	23	3	13	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.952095808	0.976047904	2	1.140350877	1.140350877	1	NA	NA	1	NA	NA	1	4	NA	1	1	8.79E-39	1	0.000205387	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	134270969	A	G	B3GAT1	CCDS8500.1	r.?	-	-	intronic	48	0	0	53	16	30.2	35	3	8.6	2	0	0	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	4	4	0	0	1	1	NA	NA	NA	NA	NA	NA	1.809588822	0.904794411	2	0.926385965	0.926385965	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.90E-24	1	0.000725791	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	36841912	G	T	AC105201.1	ENST00000510201	r.?	-	-	intronic	39	0	0	30	15	50	29	11	37.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.996007984	0.998003992	2	3.324561404	1.662280702	2	NA	NA	1	NA	NA	1	4	NA	1	1	4.41E-27	1	1.56E-18	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	134416847	A	C	EPHB1	ENST00000460895	r.?	-	-	intronic	28	0	0	35	4	11.4	25	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.351371459	5	2	3	1	2	0.648628541	1	2	NA	2	NA	0.351371459	NA	0.609146167	0.609146167	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	0.0000289	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	134442791	C	T	-	-	-	-	-	-	17	0	0	35	5	14.3	14	2	14.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	4	4	0	0	1	1	NA	NA	NA	NA	NA	NA	0.856858283	0.856858283	1	1.540385965	1.540385965	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.000000895	1	0.002185852	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	134461691	T	G	RAPGEF1	CCDS48048.1	r.?	-	-	intronic	13	0	0	46	4	8.7	29	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	9	4	7	3	2	1	1	1	NA	NA	NA	NA	NA	NA	0.956305389	0.956305389	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	0.0000862	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	134496095	C	G	CALD1	CCDS5836.1	r.?	-	-	intronic	51	0	0	51	22	43.1	32	6	18.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.582558882	1.291279441	2	2.025122807	2.025122807	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.24E-37	1	1.27E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	134528555	C	T	RAPGEF1	CCDS48048.1	r.?	-	-	intronic	46	0	0	83	25	30.1	57	14	24.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	9	4	7	3	2	1	1	1	NA	NA	NA	NA	NA	NA	3.308596806	1.102865602	3	2.649894737	0.883298246	3	NA	NA	1	NA	NA	0	4	NA	1	1	2.44E-37	1	3.84E-20	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	134546691	G	A	-	-	-	-	-	-	17	0	0	30	22	73.3	35	11	31.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	4	4	0	0	1	1	NA	NA	NA	NA	NA	NA	4.392147705	1.098036926	4	3.382385965	1.127461988	3	NA	NA	1	NA	NA	1	4	NA	1	1	1.34E-44	1	1.82E-17	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	134581956	C	T	SGK1	CCDS47476.1	r.?	-	-	intronic	40	0	0	27	19	70.4	25	8	32	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.810379242	1.405189621	2	2.807017544	1.403508772	2	NA	NA	1	NA	NA	1	4	NA	1	1	4.08E-38	1	3.92E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	134639348	C	T	-	-	-	-	-	-	22	0	0	78	8	10.3	38	3	7.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	9	4	7	3	2	1	1	1	NA	NA	NA	NA	NA	NA	1.132177645	1.132177645	1	0.850982456	0.850982456	1	NA	NA	1	NA	NA	0	4	NA	1	1	6.71E-09	1	0.000925091	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	134644456	G	A	-	-	-	-	-	-	51	0	0	54	17	31.5	24	2	8.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.277661109	2	1	1	1	1	0.722338891	NA	2	NA	1	NA	0.277661109	1.57248503	0.786242515	2	0.751116047	0.751116047	1	NA	NA	1	NA	NA	0	4	NA	1	1	3.02E-26	1	0.006413403	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	134677840	G	T	-	-	-	-	-	-	41	0	0	54	6	11.1	47	10	21.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	9	4	7	3	2	1	1	1	NA	NA	NA	NA	NA	NA	1.220113772	1.220113772	1	2.294421053	1.147210526	2	NA	NA	1	NA	NA	0	4	NA	1	1	0.000000329	1	4.27E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	37863602	G	A	-	-	-	-	-	-	43	0	0	30	12	40	10	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.596806387	0.798403194	2	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	1.94E-20	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	134764923	C	G	-	-	-	-	-	-	53	0	0	28	8	28.6	41	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.141716567	1.141716567	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	1.11E-12	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	134795904	T	C	-	-	-	-	-	-	60	0	0	37	20	54.1	33	3	9.1	123	0	0	249	95	38.2	196	13	6.6	1.23E-07	TRUE	TRUE	3	2.277661109	2	1	1	1	1	0.722338891	NA	2	NA	1	NA	0.277661109	2.700680639	1.350340319	2	0.823512775	0.823512775	1	1.9069501	0.95347505	2	0.597273002	0.597273002	1	4	3	1	1	1.40E-36	4.76E-149	0.000609557	3.52E-11	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	X	134837608	G	A	-	-	-	-	-	-	37	0	0	40	32	80	27	9	33.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.402297358	3.60351971	4	3	0	0	0.597702642	0.39648029	5	4	0	0	0.402297358	0.60351971	5.115450661	1.161995714	4.402297358	3.455024695	0.958791674	3.60351971	NA	NA	1	NA	NA	0	4	NA	1	1	1.72E-66	1	8.44E-15	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	134863820	C	A	-	-	-	-	-	-	29	0	0	29	8	27.6	33	8	24.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.377796407	1.377796407	1	2.273086892	1.136543446	2	NA	NA	1	NA	NA	0	4	NA	1	1	1.53E-12	1	4.85E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	134865225	A	T	EPHB1	CCDS46921.1	r.?	-	-	intronic	40	0	0	48	15	31.2	36	8	22.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.351371459	5	2	3	1	2	0.648628541	1	2	NA	2	NA	0.351371459	NA	1.667136877	1.011226505	1.648628541	2.613368421	0.871122807	3	NA	NA	0	NA	NA	1	4	NA	1	1	2.86E-23	1	1.04E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	134920419	T	C	EPHB1	CCDS46921.1	r.2604u>c	c.2234T>C	p.L745P	missense	45	0	0	40	11	27.5	32	4	12.5	299	0	0	470	163	34.7	503	106	21.1	2.57E-103	TRUE	TRUE	3.351371459	5	2	3	1	2	0.648628541	1	2	NA	2	NA	0.351371459	NA	1.469431542	1.469431542	1	1.471491228	1.471491228	1	1.854155437	0.927077719	2	2.483877193	0.827959064	3	4	3	1	1	9.88E-17	4.01E-246	0.0000201	2.29E-134	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	2	134953597	T	C	MGAT5	CCDS2171.1	r.?	-	-	intronic	45	0	0	52	12	23.1	41	1	2.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	6	2	3	2	3	1	1	NA	NA	NA	NA	NA	NA	1.384155689	1.384155689	1	0.306526316	0.306526316	1	NA	NA	0	NA	NA	1	4	NA	1	1	4.19E-17	1	0.18577148	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	135021079	C	G	KNDC1	CCDS7674.1	r.?	-	-	intronic	9	0	0	27	13	48.1	9	1	11.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.920159681	0.96007984	2	0.973684211	0.973684211	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.29E-23	1	0.044110422	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	135021080	A	G	KNDC1	CCDS7674.1	r.?	-	-	intronic	9	0	0	27	13	48.1	8	1	12.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.920159681	0.96007984	2	1.096491228	1.096491228	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.29E-23	1	0.039306956	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	135075165	C	A	-	-	-	-	-	-	56	0	0	42	6	14.3	24	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.277661109	2	1	1	1	1	0.722338891	NA	2	NA	1	NA	0.277661109	0.713858283	0.713858283	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	7.02E-08	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	135077879	T	C	-	-	-	-	-	-	48	0	0	42	13	31	25	0	0	68	0	0	356	62	17.4	317	30	9.5	6.06E-20	FALSE	TRUE	3	2.277661109	2	1	1	1	1	0.722338891	NA	2	NA	1	NA	0.277661109	1.54752495	1.54752495	1	0	NA	0	0.868610778	0.868610778	1	0.859711139	0.859711139	1	NA	3	1	1	2.72E-20	8.83E-74	1	2.28E-28	YES	1_1	0_1	somatic	custom.pulldown.HiSeq
PD9852b	4	135081770	G	A	-	-	-	-	-	-	36	0	0	39	7	17.9	29	2	6.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.277661109	2	1	1	1	1	0.722338891	NA	2	NA	1	NA	0.277661109	0.893570858	0.893570858	1	0.624421774	0.624421774	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.04E-09	1	0.009279585	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	40102319	A	G	-	-	-	-	-	-	56	0	0	27	12	44.4	24	4	16.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.77245509	0.886227545	2	1.464912281	1.464912281	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.96E-21	1	0.00000613	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	135471891	T	A	-	-	-	-	-	-	49	0	0	62	22	35.5	34	9	26.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.351371459	5	2	3	1	2	0.648628541	1	2	NA	2	NA	0.351371459	NA	1.896902537	0.948451268	2	3.119561404	1.039853801	3	NA	NA	0	NA	NA	1	4	NA	1	1	6.75E-35	1	9.15E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	135520912	C	T	DDX31	CCDS6951.1	r.?	-	-	intronic	32	0	0	56	39	69.6	44	17	38.6	0	0	NA	2	2	100	0	0	NA	1	TRUE	FALSE	9	4	7	3	2	1	1	1	NA	NA	NA	NA	NA	NA	7.650443114	1.092920445	7	4.157964912	1.385988304	3	10.99201597	1.570287995	7	NA	NA	0	4	NA	1	1	1.64E-76	0.000025	4.61E-28	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	135555800	A	G	ZFAT	CCDS47924.1	r.?	-	-	intronic	50	0	0	34	11	32.4	40	10	25	0	0	NA	0	0	NA	1	1	100	0.01	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.617413174	1.617413174	1	2.348230261	1.17411513	2	NA	NA	1	9.392921042	9.392921042	1	4	NA	1	1	1.26E-17	1	7.22E-15	0.005	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	135595401	G	T	TRPC7	CCDS47267.1	r.?	-	-	intronic	45	0	0	29	15	51.7	24	9	37.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.063872255	1.031936128	2	3.289473684	1.644736842	2	NA	NA	1	NA	NA	1	4	NA	1	1	2.22E-27	1	2.39E-15	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	135653666	C	T	ACMSD	CCDS2173.2	r.?	-	-	intronic	56	0	0	51	7	13.7	49	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	6	2	4	2	2	1	1	NA	NA	NA	NA	NA	NA	0.820906188	0.820906188	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	7.46E-09	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	135654631	C	G	-	-	-	-	-	-	36	0	0	44	7	15.9	28	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.351371459	5	2	3	1	2	0.648628541	1	2	NA	2	NA	0.351371459	NA	0.849598601	0.849598601	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	2.55E-09	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	135674508	G	A	C9orf98	CCDS6954.1	r.?	-	-	intronic	15	0	0	39	16	41	10	3	30	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	9	4	7	3	2	1	1	1	NA	NA	NA	NA	NA	NA	4.506726547	0.901345309	5	3.231578947	1.077192982	3	NA	NA	1	NA	NA	0	4	NA	1	1	5.16E-27	1	0.0000146	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	135706208	G	T	CCNT2	CCDS2174.1	r.?	-	-	intronic	28	0	0	57	9	15.8	31	4	12.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	6	2	4	2	2	1	1	NA	NA	NA	NA	NA	NA	0.946738523	0.946738523	1	1.647578947	1.647578947	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.42E-11	1	0.0000177	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	135730912	T	A	PPP2R3A	CCDS3087.1	r.?	-	-	intronic	45	0	0	53	13	24.5	31	5	16.1	0	0	NA	2	0	0	0	0	NA	1	TRUE	FALSE	3.351371459	5	2	3	1	2	0.648628541	1	2	NA	2	NA	0.351371459	NA	1.30912992	1.30912992	1	1.895280702	1.895280702	1	0	NA	0	NA	NA	1	4	NA	1	1	8.53E-19	1	0.000000476	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	135759123	G	A	-	-	-	-	-	-	36	0	0	38	5	13.2	32	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.526946108	0.526946108	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.00000137	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	135926264	C	T	-	-	-	-	-	-	32	0	0	21	8	38.1	32	6	18.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.520958084	1.520958084	1	1.649122807	1.649122807	1	NA	NA	1	NA	NA	1	4	NA	1	1	7.50E-14	1	1.27E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	136000510	G	A	-	-	-	-	-	-	42	0	0	19	10	52.6	25	8	32	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.099800399	1.0499002	2	2.807017544	1.403508772	2	NA	NA	1	NA	NA	1	4	NA	1	1	8.66E-19	1	3.92E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	136062206	C	T	-	-	-	-	-	-	19	0	0	42	5	11.9	39	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	9	4	7	3	2	1	1	1	NA	NA	NA	NA	NA	NA	1.3080499	1.3080499	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	0.00000228	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	136105588	G	A	-	-	-	-	-	-	46	0	0	56	10	17.9	31	1	3.2	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0.893570858	0.893570858	1	0.300573473	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	2.82E-13	1	0.143917729	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	46076944	C	T	KIAA0427	CCDS45864.1	r.?	-	-	intronic	31	0	0	27	10	37	23	8	34.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.477045908	1.477045908	1	3.052631579	1.526315789	2	NA	NA	1	NA	NA	1	4	NA	1	1	7.62E-17	1	1.79E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	136233502	G	T	ZRANB3	CCDS46419.1	r.?	-	-	intronic	42	0	0	40	5	12.5	25	2	8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	6	2	4	2	2	1	1	NA	NA	NA	NA	NA	NA	0.749001996	0.749001996	1	1.021754386	1.021754386	1	NA	NA	0	NA	NA	1	4	NA	1	1	0.00000178	1	0.006948068	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	136273384	T	C	-	-	-	-	-	-	53	0	0	28	8	28.6	33	1	3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.141716567	1.141716567	1	0.263157895	0.263157895	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.11E-12	1	0.15245715	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	136341104	C	T	R3HDM1	CCDS2177.1	r.?	-	-	intronic	44	0	0	40	6	15	38	2	5.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	6	2	4	2	2	1	1	NA	NA	NA	NA	NA	NA	0.898802395	0.898802395	1	0.676912281	0.676912281	1	NA	NA	0	NA	NA	1	4	NA	1	1	5.18E-08	1	0.015598339	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	136386046	C	A	-	-	-	-	-	-	53	0	0	50	5	10	27	1	3.7	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	4.402297358	3.60351971	4	3	0	0	0.597702642	0.39648029	5	4	0	0	0.402297358	0.60351971	0.639431333	0.639431333	1	0.383891633	NA	0	NA	NA	0	NA	NA	0	NA	NA	1	1	0.00000549	1	0.126579904	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	136401870	G	C	-	-	-	-	-	-	62	0	0	46	24	52.2	36	2	5.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.277661109	2	1	1	1	1	0.722338891	NA	2	NA	1	NA	0.277661109	2.605832335	1.302916168	2	0.506777092	0.506777092	1	NA	NA	1	NA	NA	0	4	NA	1	1	4.23E-43	1	0.014070883	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	136447533	G	T	FAM163B	CCDS35171.1	r.?	-	-	intronic	15	0	0	47	5	10.6	27	1	3.7	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	9	4	7	3	2	1	1	1	NA	NA	NA	NA	NA	NA	1.165153693	1.165153693	1	0.398561404	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	0.00000402	1	0.126579904	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	136492732	T	A	-	-	-	-	-	-	54	0	0	48	21	43.8	29	7	24.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.277661109	2	1	1	1	1	0.722338891	NA	2	NA	1	NA	0.277661109	2.186502994	1.093251497	2	2.180951415	1.706987401	1.277661109	NA	NA	1	NA	NA	0	4	NA	1	1	9.35E-36	1	1.11E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	58558514	C	A	-	-	-	-	-	-	53	0	0	27	14	51.9	30	9	30	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.071856287	1.035928144	2	2.631578947	1.315789474	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.15E-25	1	2.54E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	136617821	G	A	MCM6	CCDS2179.1	r.?	-	-	intronic	24	0	0	60	16	26.7	23	4	17.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	6	2	4	2	2	1	1	NA	NA	NA	NA	NA	NA	1.599868263	0.799934132	2	2.222315789	2.222315789	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.86E-23	1	0.00000513	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	62764278	C	A	-	-	-	-	-	-	36	0	0	37	18	48.6	22	4	18.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.94011976	0.97005988	2	1.596491228	1.596491228	1	NA	NA	1	NA	NA	1	4	NA	1	1	6.16E-32	1	0.00000425	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	136851184	T	A	-	-	-	-	-	-	46	0	0	40	18	45	39	13	33.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	2.246407186	1.123203593	2	3.127842707	1.563921354	2	NA	NA	1	NA	NA	0	4	NA	1	1	3.90E-31	1	8.79E-21	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	136873980	C	A	-	-	-	-	-	-	55	0	0	31	6	19.4	35	1	2.9	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.277661109	2	1	1	1	1	0.722338891	NA	2	NA	1	NA	0.277661109	0.968451098	0.968451098	1	0.262438137	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	1.03E-08	1	0.16091139	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	136878534	T	A	-	-	-	-	-	-	45	0	0	49	6	12.2	32	1	3.1	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	4.402297358	3.60351971	4	3	0	0	0.597702642	0.39648029	5	4	0	0	0.402297358	0.60351971	0.780106226	0.780106226	1	0.321638936	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	0.000000182	1	0.14819814	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	136906219	T	G	-	-	-	-	-	-	53	0	0	43	10	23.3	33	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.351371459	5	2	3	1	2	0.648628541	1	2	NA	2	NA	0.351371459	NA	1.24500927	1.24500927	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	1.61E-14	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	137047193	C	A	-	-	-	-	-	-	40	0	0	34	8	23.5	30	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.277661109	2	1	1	1	1	0.722338891	NA	2	NA	1	NA	0.277661109	1.173123752	1.173123752	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	6.32E-12	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	137181560	A	C	-	-	-	-	-	-	43	0	0	36	8	22.2	32	3	9.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.351371459	5	2	3	1	2	0.648628541	1	2	NA	2	NA	0.351371459	NA	1.186232009	1.186232009	1	1.106561404	1.106561404	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.04E-11	1	0.000556213	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	63346983	C	T	-	-	-	-	-	-	55	0	0	44	17	38.6	28	10	35.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.540918164	0.770459082	2	3.131578947	1.565789474	2	NA	NA	1	NA	NA	1	4	NA	1	1	4.61E-28	1	1.18E-16	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	137243840	A	T	-	-	-	-	-	-	57	0	0	47	20	42.6	28	4	14.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.277661109	2	1	1	1	1	0.722338891	NA	2	NA	1	NA	0.277661109	2.126598802	1.063299401	2	1.294091503	1.294091503	1	NA	NA	1	NA	NA	0	4	NA	1	1	8.18E-34	1	0.0000116	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	137248131	C	A	-	-	-	-	-	-	43	0	0	42	11	26.2	32	3	9.4	0	0	NA	0	0	NA	1	0	0	1	TRUE	FALSE	3.351371459	5	2	3	1	2	0.648628541	1	2	NA	2	NA	0.351371459	NA	1.399967506	1.399967506	1	1.106561404	1.106561404	1	NA	NA	0	0	0	1	4	NA	1	1	1.81E-16	1	0.000556213	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	137374481	G	A	-	-	-	-	-	-	57	0	0	52	6	11.5	26	1	3.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.351371459	5	2	3	1	2	0.648628541	1	2	NA	2	NA	0.351371459	NA	0.614489554	0.614489554	1	0.447333333	0.447333333	1	NA	NA	0	NA	NA	1	4	NA	1	1	0.000000261	1	0.122190858	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	137423811	C	T	-	-	-	-	-	-	58	0	0	57	13	22.8	44	4	9.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.138179641	1.138179641	1	0.854755815	0.854755815	1	NA	NA	1	NA	NA	0	4	NA	1	1	2.44E-18	1	0.0000723	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	52214666	G	A	-	-	-	-	-	-	34	0	0	44	6	13.6	32	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.542914172	0.542914172	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	9.37E-08	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	137491023	T	A	-	-	-	-	-	-	31	0	0	47	15	31.9	27	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.351371459	5	2	3	1	2	0.648628541	1	2	NA	2	NA	0.351371459	NA	1.704540589	1.033914279	1.648628541	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	1.97E-23	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	137570714	C	T	THSD7B	ENST00000409968	r.?	-	-	intronic	48	0	0	65	18	27.7	37	6	16.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	2.213788423	1.106894212	2	2.069052632	2.069052632	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.52E-26	1	3.18E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	137574650	T	A	-	-	-	-	-	-	46	0	0	50	10	20	31	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	4.402297358	3.60351971	4	3	0	0	0.597702642	0.39648029	5	4	0	0	0.402297358	0.60351971	1.278862665	1.278862665	1	0	NA	0	NA	NA	0	NA	NA	0	NA	NA	1	1	8.36E-14	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	137593166	C	T	-	-	-	-	-	-	46	0	0	40	16	40	27	5	18.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.277661109	2	1	1	1	1	0.722338891	NA	2	NA	1	NA	0.277661109	1.996806387	0.998403194	2	1.674174323	1.674174323	1	NA	NA	1	NA	NA	0	4	NA	1	1	8.56E-27	1	0.00000023	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	137638654	C	A	-	-	-	-	-	-	39	0	0	55	20	36.4	36	6	16.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.277661109	2	1	1	1	1	0.722338891	NA	2	NA	1	NA	0.277661109	1.817093812	0.908546906	2	1.511281686	1.511281686	1	NA	NA	1	NA	NA	0	4	NA	1	1	4.08E-32	1	2.68E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	64442740	T	C	-	-	-	-	-	-	44	0	0	27	12	44.4	31	11	35.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.77245509	0.886227545	2	3.114035088	1.557017544	2	NA	NA	1	NA	NA	1	4	NA	1	1	3.96E-21	1	3.77E-18	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	137671893	G	A	THSD7B	ENST00000409968	r.?	-	-	intronic	54	0	0	79	6	7.6	32	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	0.607393214	0.607393214	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.00000318	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	137724839	G	T	COL5A1	CCDS6982.1	r.?	-	-	intronic	12	0	0	36	16	44.4	27	3	11.1	326	0	0	23	7	30.4	18	7	38.9	2.89E-10	TRUE	TRUE	8	6.675936267	5	3	3	3	1	0.324063733	NA	4	NA	3	NA	0.675936267	4.43645509	1.109113772	4	1.492713136	1.492713136	1	3.037572854	1.012524285	3	5.23121991	1.423098642	3.675936267	4	3	1	1	1.01E-27	1.79E-11	0.000334187	2.37E-12	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	137792589	T	C	AKR1D1	CCDS5846.1	r.?	-	-	intronic	54	0	0	41	25	61	30	4	13.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.435129741	1.21756487	2	1.166666667	1.166666667	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.84E-47	1	0.0000154	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	137986711	G	A	-	-	-	-	-	-	53	0	0	43	11	25.6	27	1	3.7	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.277661109	2	1	1	1	1	0.722338891	NA	2	NA	1	NA	0.277661109	1.277956088	1.277956088	1	0.334834865	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	2.42E-16	1	0.126579904	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	69820814	C	T	-	-	-	-	-	-	41	0	0	37	20	54.1	25	3	12	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.159680639	1.079840319	2	1.052631579	1.052631579	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.40E-36	1	0.00026475	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	138061917	A	G	-	-	-	-	-	-	49	0	0	26	13	50	23	8	34.8	0	0	NA	0	0	NA	4	0	0	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.996007984	0.998003992	2	3.052631579	1.526315789	2	NA	NA	1	0	0	1	4	NA	1	1	1.20E-23	1	1.79E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	138072113	C	A	THSD7B	ENST00000409968	r.?	-	-	intronic	38	0	0	56	6	10.7	40	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	0.855145709	0.855145709	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.000000409	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	138100476	C	A	-	-	-	-	-	-	52	0	0	36	8	22.2	31	5	16.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.277661109	2	1	1	1	1	0.722338891	NA	2	NA	1	NA	0.277661109	1.108227545	1.108227545	1	1.45698414	1.45698414	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.04E-11	1	0.000000476	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	138138409	C	A	-	-	-	-	-	-	45	0	0	44	18	40.9	29	6	20.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	2.041734531	1.020867265	2	1.944334656	1.944334656	1	NA	NA	1	NA	NA	0	4	NA	1	1	3.47E-30	1	6.72E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	138262464	C	T	-	-	-	-	-	-	46	0	0	42	11	26.2	40	6	15	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.307908184	1.307908184	1	1.408938156	1.408938156	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.81E-16	1	5.18E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	138427717	A	C	-	-	-	-	-	-	53	0	0	35	16	45.7	28	9	32.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	2.281351297	1.140675649	2	3.015127655	1.507563827	2	NA	NA	1	NA	NA	0	4	NA	1	1	5.66E-28	1	1.24E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	74457083	G	C	-	-	-	-	-	-	32	0	0	34	10	29.4	25	3	12	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.173652695	1.173652695	1	1.052631579	1.052631579	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.15E-15	1	0.00026475	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	138468326	A	T	-	-	-	-	-	-	44	0	0	51	4	7.8	27	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	4.402297358	3.60351971	4	3	0	0	0.597702642	0.39648029	5	4	0	0	0.402297358	0.60351971	0.498756439	0.498756439	1	0	NA	0	NA	NA	0	NA	NA	0	NA	NA	1	1	0.000129466	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	138595403	C	T	KIAA1549	CCDS47723.1	r.?	-	-	intronic	41	0	0	28	18	64.3	27	5	18.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.566866267	1.283433134	2	1.622807018	1.622807018	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.77E-35	1	0.00000023	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	138641991	C	G	-	-	-	-	-	-	42	0	0	41	11	26.8	39	7	17.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.337860279	1.337860279	1	1.681332867	1.681332867	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.34E-16	1	1.04E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	138690804	G	A	-	-	-	-	-	-	21	1	4.8	29	10	34.5	27	3	11.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.277661109	2	1	1	1	1	0.722338891	NA	2	NA	1	NA	0.277661109	1.722245509	0.861122754	2	1.004504594	1.004504594	1	NA	NA	1	NA	NA	0	4	NA	0.099912572	1	1.79E-16	1	0.000334187	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	138903710	G	A	NACC2	CCDS6993.1	r.1475c>u	c.1416C>T	p.S472S	silent	12	0	0	60	7	11.7	6	2	33.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	8	6.675936267	5	3	3	3	1	0.324063733	NA	4	NA	3	NA	0.675936267	1.169065868	1.169065868	1	4.478139409	4.478139409	1	NA	NA	1	NA	NA	0	4	NA	1	1	2.39E-08	1	0.000370028	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	138907436	G	C	-	-	-	-	-	-	51	0	0	47	4	8.5	22	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0.424321357	0.424321357	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	0.0000939	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	830042	A	T	AZU1	CCDS12044.1	r.?	-	-	intronic	15	0	0	55	4	7.3	34	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	9	5.384331439	6	3	3	2	1	0.615668561	NA	4	NA	2	NA	0.384331439	0.802417166	0.802417166	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	0.000173903	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	138958062	T	A	-	-	-	-	-	-	64	0	0	65	5	7.7	32	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	0.61538523	0.61538523	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.0000201	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	138985363	G	A	-	-	-	-	-	-	59	0	0	55	9	16.4	44	9	20.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0.818690619	0.818690619	1	1.925548814	0.962774407	2	NA	NA	1	NA	NA	0	4	NA	1	1	1.01E-11	1	1.18E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	6787337	C	G	VAV1	CCDS12174.1	r.?	-	-	intronic	36	0	0	25	7	28	38	2	5.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5.428592363	5.384331439	3	3	2	2	0.571407637	0.615668561	4	4	2	2	0.428592363	0.384331439	2.077770333	1.038885166	2	0.644281847	0.644281847	1	NA	NA	1	NA	NA	0	4	NA	1	1	3.47E-11	1	0.015598339	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	139158191	T	C	FAM135B	CCDS6375.2	r.?	-	-	intronic	51	0	0	54	15	27.8	23	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.387780439	1.387780439	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	2.20E-22	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	139164650	T	C	FAM135B	CCDS6375.2	r.2241a>g	c.2068A>G	p.S690G	missense	38	0	0	35	5	14.3	27	1	3.7	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0.713858283	0.713858283	1	0.347538079	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	0.000000895	1	0.126579904	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	7930092	G	A	EVI5L	CCDS12188.1	r.?	-	-	downstream	15	0	0	30	9	30	20	1	5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5.428592363	5.384331439	3	3	2	2	0.571407637	0.615668561	4	4	2	2	0.428592363	0.384331439	2.226182499	0.91665548	2.428592363	0.607813063	0.607813063	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.54E-14	1	0.09538952	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	8452729	G	A	RAB11B	CCDS12201.1	r.?	-	-	upstream	30	0	0	43	5	11.6	33	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5.428592363	5.384331439	3	3	2	2	0.571407637	0.615668561	4	4	2	2	0.428592363	0.384331439	0.860790566	0.860790566	1	0	0	1	NA	NA	1	NA	NA	0	3	NA	1	1	0.00000257	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	139405955	G	C	HIPK2	ENST00000406875	r.?	-	-	intronic	41	0	0	28	16	57.1	22	5	22.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.279441118	1.139720559	2	1.99122807	1.99122807	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.39E-30	1	7.67E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	139480664	C	T	NXPH2	CCDS46421.1	r.?	-	-	intronic	49	0	0	64	10	15.6	36	5	13.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	1.246754491	1.246754491	1	1.775298246	1.775298246	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.16E-12	1	0.00000104	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	139485819	T	G	NXPH2	CCDS46421.1	r.?	-	-	intronic	44	0	0	75	16	21.3	36	9	25	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	1.702299401	0.851149701	2	3.192982456	1.064327485	3	NA	NA	1	NA	NA	1	4	NA	1	1	9.88E-22	1	1.63E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	139501741	T	A	FAM135B	CCDS6375.2	r.?	-	-	intronic	45	0	0	38	6	15.8	42	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0.788738523	0.788738523	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	3.76E-08	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	139502537	A	G	NXPH2	CCDS46421.1	r.?	-	-	intronic	45	0	0	84	7	8.3	40	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	0.663337325	0.663337325	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.000000253	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	14006091	T	C	C19orf57	CCDS12299.1	r.?	-	-	intronic	32	0	0	33	18	54.5	22	7	31.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.350372916	5.384331439	3	3	0	2	0.649627084	0.615668561	3	4	1	2	0.350372916	0.384331439	2.911601942	0.970533981	3	3.865691082	1.142231827	3.384331439	NA	NA	0	NA	NA	1	4	NA	1	1	3.68E-33	1	1.25E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	139648437	T	C	-	-	-	-	-	-	55	0	0	45	8	17.8	45	7	15.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.277661109	2	1	1	1	1	0.722338891	NA	2	NA	1	NA	0.277661109	0.888578842	0.888578842	1	1.411736186	1.411736186	1	NA	NA	1	NA	NA	0	4	NA	1	1	7.14E-11	1	0.000000003	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	139671095	A	T	COL22A1	CCDS6376.1	r.?	-	-	intronic	48	0	0	36	5	13.9	34	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0.69389022	0.69389022	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	0.00000104	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	139690834	G	T	CLSTN2	CCDS3112.1	r.?	-	-	intronic	34	0	0	43	7	16.3	28	2	7.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.351371459	5	2	3	1	2	0.648628541	1	2	NA	2	NA	0.351371459	NA	0.870972151	0.870972151	1	0.835807018	0.835807018	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.15E-09	1	0.008668191	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	139697786	T	A	-	-	-	-	-	-	45	0	0	67	8	11.9	40	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	0.9510499	0.9510499	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	1.96E-09	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	139722266	C	G	COL22A1	CCDS6376.1	r.?	-	-	intronic	63	0	0	34	7	20.6	27	3	11.1	1	0	0	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.028355289	1.028355289	1	1.042614236	1.042614236	1	NA	NA	1	NA	NA	0	4	NA	1	1	3.73E-10	1	0.000334187	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	139738374	G	A	COL22A1	CCDS6376.1	r.?	-	-	intronic	38	0	0	45	13	28.9	34	4	11.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.442692615	1.442692615	1	1.108364683	1.108364683	1	NA	NA	1	NA	NA	0	4	NA	1	1	7.68E-20	1	0.0000257	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	16358592	A	G	-	-	-	-	-	-	14	0	0	37	6	16.2	19	1	5.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5.384331439	2	3	1	2	1	0.615668561	NA	4	NA	2	NA	0.384331439	0.808706587	0.808706587	1	0.644281847	0.644281847	1	NA	NA	0	NA	NA	1	4	NA	1	1	3.18E-08	1	0.090843738	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	139914102	C	T	CLSTN2	CCDS3112.1	r.?	-	-	intronic	49	0	0	47	10	21.3	36	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.351371459	5	2	3	1	2	0.648628541	1	2	NA	2	NA	0.351371459	NA	1.138141522	1.138141522	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	4.27E-14	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	139953315	G	A	SLC35A4	CCDS4231.1	r.?	-	-	downstream	24	0	0	40	23	57.5	25	7	28	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.295409182	1.147704591	2	2.456140351	1.228070175	2	NA	NA	1	NA	NA	1	4	NA	1	1	9.75E-43	1	3.47E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	139980379	G	A	UAP1L1	CCDS7028.2	r.?	-	-	downstream	25	0	0	36	19	52.8	25	5	20	205	0	0	13	2	15.4	17	0	0	1	TRUE	FALSE	8	6.675936267	5	3	3	3	1	0.324063733	NA	4	NA	3	NA	0.675936267	5.275784431	1.055156886	5	2.689573218	1.005096142	2.675936267	1.538770459	1.538770459	1	0	NA	0	4	NA	1	1	1.51E-34	0.001879825	0.000000153	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	140002253	C	T	-	-	-	-	-	-	36	0	0	25	12	48	27	3	11.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.916167665	0.958083832	2	0.973684211	0.973684211	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.20E-21	1	0.000334187	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	140066420	G	T	-	-	-	-	-	-	41	0	0	40	7	17.5	41	1	2.4	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0.873602794	0.873602794	1	0.225430105	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	1.26E-09	1	0.18577148	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	140119852	C	A	-	-	-	-	-	-	57	0	0	34	15	44.1	38	8	21.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	2.201479042	1.100739521	2	1.98190634	0.99095317	2	NA	NA	1	NA	NA	0	4	NA	1	1	5.18E-26	1	1.67E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	30574829	C	G	-	-	-	-	-	-	39	0	0	39	7	17.9	27	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.7646161	6	2	3	2	3	0.2353839	1	3	NA	2	NA	0.7646161	NA	1.20943714	1.20943714	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	1.04E-09	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	140162786	A	G	-	-	-	-	-	-	61	0	0	75	5	6.7	49	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	0.53546507	0.53546507	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.0000403	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	140193474	G	T	C4orf49	CCDS43269.1	r.?	-	-	intronic	33	0	0	37	8	21.6	30	4	13.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.277661109	2	1	1	1	1	0.722338891	NA	2	NA	1	NA	0.277661109	1.078275449	1.078275449	1	1.203595594	1.203595594	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.33E-11	1	0.0000154	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	31158024	C	G	-	-	-	-	-	-	32	0	0	34	5	14.7	22	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.7646161	6	2	3	2	3	0.2353839	1	3	NA	2	NA	0.7646161	NA	0.993224914	0.993224914	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	0.000000771	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	31497415	C	A	-	-	-	-	-	-	30	0	0	50	6	12	38	2	5.3	1	0	0	0	0	NA	0	0	NA	1	TRUE	FALSE	4.7646161	6	2	3	2	3	0.2353839	1	3	NA	2	NA	0.7646161	NA	0.810795848	0.810795848	1	0.676912281	0.676912281	1	NA	NA	0	NA	NA	1	4	NA	1	1	0.000000206	1	0.015598339	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	140378676	C	T	-	-	-	-	-	-	51	0	0	41	18	43.9	36	6	16.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.351371459	5	2	3	1	2	0.648628541	1	2	NA	2	NA	0.351371459	NA	2.34574708	1.17287354	2	1.965912281	1.965912281	1	NA	NA	0	NA	NA	1	4	NA	1	1	6.91E-31	1	2.68E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	140424280	T	A	PNPLA7	CCDS48070.1	r.?	-	-	intronic	26	0	0	31	9	29	26	4	15.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	8	6.675936267	5	3	3	3	1	0.324063733	NA	4	NA	3	NA	0.675936267	2.897684631	0.965894877	3	2.070971378	2.070971378	1	NA	NA	1	NA	NA	0	4	NA	1	1	3.57E-14	1	0.00000856	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	33003676	C	T	-	-	-	-	-	-	77	0	0	43	10	23.3	43	3	7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.7646161	6	2	3	2	3	0.2353839	1	3	NA	2	NA	0.7646161	NA	1.574295272	1.574295272	1	0.894035088	0.894035088	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.61E-14	1	0.001328364	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	140537763	T	A	-	-	-	-	-	-	32	0	0	33	10	30.3	30	1	3.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.351371459	5	2	3	1	2	0.648628541	1	2	NA	2	NA	0.351371459	NA	1.61904639	1.61904639	1	0.388473684	0.388473684	1	NA	NA	0	NA	NA	1	4	NA	1	1	8.14E-16	1	0.139615808	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	140554465	G	A	PCDHB7	CCDS4249.1	r.2131g>a	c.2049G>A	p.S683S	silent	31	0	0	68	13	19.1	17	3	17.6	144	0	0	45	4	8.9	26	1	3.8	0.229956854	TRUE	TRUE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.76247505	0.76247505	1	1.543859649	1.543859649	1	0.355289421	0.355289421	1	0.333333333	0.333333333	1	4	3	1	1	2.96E-17	0.0000791	0.0000807	0.122190858	YES	1_1	1_0	somatic	custom.pulldown.HiSeq
PD9852b	19	35358482	C	T	-	-	-	-	-	-	40	0	0	50	13	26	33	4	12.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.7646161	6	2	3	2	3	0.2353839	1	3	NA	2	NA	0.7646161	NA	1.756724338	0.995527774	1.7646161	1.545403509	1.545403509	1	NA	NA	0	NA	NA	1	4	NA	1	1	3.65E-19	1	0.0000228	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	140801352	A	T	-	-	-	-	-	-	61	0	0	48	14	29.2	40	7	17.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	2.333668663	1.166834331	2	2.235087719	1.11754386	2	NA	NA	1	NA	NA	1	4	NA	1	1	2.51E-21	1	1.26E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	35389777	C	A	-	-	-	-	-	-	31	0	0	42	7	16.7	33	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.7646161	6	2	3	2	3	0.2353839	1	3	NA	2	NA	0.7646161	NA	1.128357555	1.128357555	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	1.81E-09	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	141009144	A	T	-	-	-	-	-	-	43	0	0	43	4	9.3	25	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	4.402297358	3.60351971	4	3	0	0	0.597702642	0.39648029	5	4	0	0	0.402297358	0.60351971	0.594671139	0.594671139	1	0	NA	0	NA	NA	0	NA	NA	0	NA	NA	1	1	0.000066	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	141089674	G	T	-	-	-	-	-	-	54	1	1.9	20	7	35	30	8	26.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.397205589	1.397205589	1	2.342105263	1.171052632	2	NA	NA	1	NA	NA	1	4	NA	0.237137336	1	5.72E-12	1	2.07E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	141221965	A	G	LRP1B	CCDS2182.1	r.?	-	-	intronic	29	0	0	54	15	27.8	44	5	11.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	2.221780439	1.11089022	2	1.456	1.456	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.20E-22	1	0.00000288	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	141277462	T	C	SCOC	CCDS3750.1	r.?	-	-	intronic	35	0	0	36	9	25	32	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.277661109	2	1	1	1	1	0.722338891	NA	2	NA	1	NA	0.277661109	1.248003992	1.248003992	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	1.63E-13	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	141292182	G	C	MAGEC2	CCDS14678.1	r.248c>g	c.?	p.?	5'UTR variant	21	0	0	46	35	76.1	30	12	40	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.402297358	3.60351971	4	3	0	0	0.597702642	0.39648029	5	4	0	0	0.402297358	0.60351971	4.866072441	1.105348423	4.402297358	4.150179814	1.15170171	3.60351971	NA	NA	0	NA	NA	0	4	NA	1	1	3.68E-71	1	1.94E-20	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	141417458	C	T	LRP1B	CCDS2182.1	r.?	-	-	intronic	43	0	0	65	28	43.1	37	13	35.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	3.444558882	0.861139721	4	4.482947368	1.120736842	4	NA	NA	1	NA	NA	1	4	NA	1	1	6.12E-47	1	3.89E-21	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	141520515	C	A	LRP1B	CCDS2182.1	r.?	-	-	intronic	43	0	0	55	8	14.5	38	3	7.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	1.158842315	1.158842315	1	1.008982456	1.008982456	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.86E-10	1	0.000925091	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	141594664	C	A	-	-	-	-	-	-	39	0	0	29	15	51.7	35	6	17.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.063872255	1.031936128	2	1.5	1.5	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.22E-27	1	2.24E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	141595019	G	A	TBC1D9	CCDS47136.1	r.?	-	-	intronic	41	0	0	27	10	37	32	5	15.6	1	0	0	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.277661109	2	1	1	1	1	0.722338891	NA	2	NA	1	NA	0.277661109	1.847045908	0.923522954	2	1.411736186	1.411736186	1	NA	NA	1	NA	NA	0	4	NA	1	1	7.62E-17	1	0.000000562	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	38086203	C	A	ZNF571	CCDS12505.1	r.?	-	-	upstream	27	0	0	45	17	37.8	24	7	29.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.7646161	6	2	3	2	3	0.2353839	1	3	NA	2	NA	0.7646161	NA	2.554006922	0.923819738	2.7646161	3.729403509	1.243134503	3	NA	NA	0	NA	NA	1	4	NA	1	1	7.37E-28	1	2.51E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	141699742	G	T	TFDP2	CCDS43159.1	r.?	-	-	intronic	52	0	0	49	8	16.3	42	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.351371459	5	2	3	1	2	0.648628541	1	2	NA	2	NA	0.351371459	NA	0.870972151	0.870972151	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	1.47E-10	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	141699837	A	T	LRP1B	CCDS2182.1	r.?	-	-	intronic	56	0	0	64	18	28.1	45	3	6.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	2.245756487	1.122878244	2	0.855719298	0.855719298	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.10E-26	1	0.001516071	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	141779399	A	G	TFDP2	CCDS43159.1	r.?	-	-	intronic	59	0	0	48	6	12.5	45	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.351371459	5	2	3	1	2	0.648628541	1	2	NA	2	NA	0.351371459	NA	0.667923428	0.667923428	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	0.00000016	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	141904954	T	A	GK5	ENST00000392993	r.?	-	-	intronic	57	0	0	37	8	21.6	36	1	2.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.351371459	5	2	3	1	2	0.648628541	1	2	NA	2	NA	0.351371459	NA	1.154171684	1.154171684	1	0.329614035	0.329614035	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.33E-11	1	0.165106833	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	141992871	A	T	-	-	-	-	-	-	57	0	0	58	8	13.8	28	1	3.6	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	4.402297358	3.60351971	4	3	0	0	0.597702642	0.39648029	5	4	0	0	0.402297358	0.60351971	0.882415239	0.882415239	1	0.373516183	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	5.99E-10	1	0.130947004	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	142039347	T	A	FGF1	CCDS4275.1	r.?	-	-	intronic	40	0	0	31	4	12.9	25	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.51497006	0.51497006	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.0000177	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	142074465	T	C	-	-	-	-	-	-	42	0	0	25	4	16	29	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.638722555	0.638722555	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.00000727	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	142323193	C	G	-	-	-	-	-	-	52	0	0	40	15	37.5	29	7	24.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.497005988	1.497005988	1	2.114035088	1.057017544	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.09E-24	1	1.11E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	142400563	T	A	-	-	-	-	-	-	53	0	0	47	10	21.3	28	9	32.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.402297358	3.60351971	4	3	0	0	0.597702642	0.39648029	5	4	0	0	0.402297358	0.60351971	1.361988738	1.361988738	1	3.330519301	0.924240623	3.60351971	NA	NA	0	NA	NA	0	4	NA	1	1	4.27E-14	1	1.24E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	142412683	A	C	-	-	-	-	-	-	59	0	0	51	20	39.2	28	1	3.6	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	4.402297358	3.60351971	4	3	0	0	0.597702642	0.39648029	5	4	0	0	0.402297358	0.60351971	2.506570824	1.043405728	2.402297358	0.373516183	NA	0	NA	NA	0	NA	NA	0	NA	NA	1	1	6.38E-33	1	0.130947004	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	142414420	C	T	-	-	-	-	-	-	20	0	0	45	9	20	23	1	4.3	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	5	2.620991218	3	2	2	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.398403194	1.398403194	1	0.403895605	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	1.47E-12	1	0.108890944	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	142452139	C	A	-	-	-	-	-	-	49	0	0	57	19	33.3	14	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	4.402297358	3.60351971	4	3	0	0	0.597702642	0.39648029	5	4	0	0	0.402297358	0.60351971	2.129306338	1.064653169	2	0	NA	0	NA	NA	0	NA	NA	0	NA	NA	1	1	1.01E-29	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	142574319	C	T	-	-	-	-	-	-	42	0	0	34	11	32.4	30	4	13.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5	2.620991218	3	2	2	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	2.265413174	1.132706587	2	1.249258499	1.249258499	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.26E-17	1	0.0000154	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	44955274	G	A	ZNF229	CCDS42574.1	r.?	-	-	upstream	37	0	0	28	12	42.9	31	4	12.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.7646161	6	2	3	2	3	0.2353839	1	3	NA	2	NA	0.7646161	NA	2.898595157	1.048462084	2.7646161	1.647578947	1.647578947	1	NA	NA	0	NA	NA	1	4	NA	1	1	6.90E-21	1	0.0000177	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	142737054	T	G	NR3C1	CCDS4278.1	r.?	-	-	intronic	52	0	0	21	10	47.6	22	3	13.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.900199601	0.9500998	2	1.192982456	1.192982456	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.28E-18	1	0.000179267	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	142806304	G	T	LRP1B	CCDS2182.1	r.?	-	-	intronic	46	0	0	41	12	29.3	43	8	18.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.755660679	0.877830339	2	2.003578947	1.001789474	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.69E-18	1	4.85E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	142836782	C	T	-	-	-	-	-	-	46	0	0	28	16	57.1	27	11	40.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.279441118	1.139720559	2	3.570175439	1.785087719	2	NA	NA	1	NA	NA	1	4	NA	1	1	4.39E-30	1	5.92E-19	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	142839153	G	C	LRP1B	CCDS2182.1	r.?	-	-	intronic	42	0	0	68	26	38.2	32	5	15.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.2889501	1.14447505	2	1.680421053	1.680421053	1	NA	NA	1	NA	NA	1	4	NA	1	1	5.33E-42	1	0.000000562	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	45202899	G	A	CEACAM16	ENST00000396750	r.?	-	-	intronic	18	0	0	36	6	16.7	26	2	7.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.7646161	6	2	3	2	3	0.2353839	1	3	NA	2	NA	0.7646161	NA	1.128357555	1.128357555	1	0.983438596	0.983438596	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.68E-08	1	0.007502227	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	142867335	C	T	-	-	-	-	-	-	47	0	0	31	15	48.4	26	7	26.9	1	0	0	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.932135729	0.966067864	2	2.359649123	1.179824561	2	NA	NA	1	NA	NA	1	4	NA	1	1	8.51E-27	1	4.73E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	143014668	A	G	-	-	-	-	-	-	50	0	0	36	14	38.9	26	8	30.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.552894212	0.776447106	2	2.701754386	1.350877193	2	NA	NA	1	NA	NA	1	4	NA	1	1	2.09E-23	1	5.63E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	50789491	G	T	MYH14	CCDS46151.1	r.?	-	-	intronic	36	0	0	54	18	33.3	33	1	3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	8	4	5	2	3	1	1	NA	NA	NA	NA	NA	NA	2.661341317	0.887113772	3	0.443157895	0.443157895	1	NA	NA	0	NA	NA	1	4	NA	1	1	3.12E-28	1	0.15245715	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	143080890	G	A	-	-	-	-	-	-	42	0	0	44	19	43.2	30	6	20	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.402297358	3.60351971	4	3	0	0	0.597702642	0.39648029	5	4	0	0	0.402297358	0.60351971	2.762343357	0.920781119	3	2.075089907	2.075089907	1	NA	NA	0	NA	NA	0	4	NA	1	1	2.39E-32	1	8.37E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	143081164	T	C	INPP4B	CCDS47112.1	r.?	-	-	intronic	48	1	2.1	42	20	47.6	35	7	20	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.277661109	2	1	1	1	1	0.722338891	NA	2	NA	1	NA	0.277661109	2.376199601	1.1880998	2	1.809918187	1.809918187	1	NA	NA	1	NA	NA	0	4	NA	0.213845552	1	4.41E-35	1	4.65E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	50992650	A	G	-	-	-	-	-	-	18	0	0	50	10	20	14	2	14.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	8	4	5	2	3	1	1	NA	NA	NA	NA	NA	NA	1.598403194	1.598403194	1	2.112385965	2.112385965	1	NA	NA	0	NA	NA	1	4	NA	1	1	8.36E-14	1	0.002185852	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	51960595	C	A	SIGLEC8	CCDS33086.1	r.?	-	-	intronic	21	0	0	49	7	14.3	34	1	2.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	8	4	5	2	3	1	1	NA	NA	NA	NA	NA	NA	1.142858283	1.142858283	1	0.428385965	0.428385965	1	NA	NA	0	NA	NA	1	4	NA	1	1	5.58E-09	1	0.156694864	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	143268752	C	A	HIVEP2	CCDS43510.1	r.?	-	-	upstream	20	0	0	29	9	31	12	3	25	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.23752495	1.23752495	1	2.192982456	2.192982456	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.79E-14	1	0.0000266	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	143331022	G	C	-	-	-	-	-	-	40	0	0	40	6	15	32	3	9.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.402297358	3.60351971	4	3	0	0	0.597702642	0.39648029	5	4	0	0	0.402297358	0.60351971	0.959146999	0.959146999	1	0.975292256	0.975292256	1	NA	NA	0	NA	NA	0	4	NA	1	1	5.18E-08	1	0.000556213	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	143635505	C	G	-	-	-	-	-	-	44	0	0	51	4	7.8	44	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.351371459	5	2	3	1	2	0.648628541	1	2	NA	2	NA	0.351371459	NA	0.416784219	1.186164126	0.351371459	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	0.000129466	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	143861539	G	A	-	-	-	-	-	-	45	0	0	41	8	19.5	39	4	10.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.351371459	5	2	3	1	2	0.648628541	1	2	NA	2	NA	0.351371459	NA	1.041960548	1.041960548	1	1.212508772	1.212508772	1	NA	NA	0	NA	NA	1	4	NA	1	1	3.22E-11	1	0.0000447	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	143873775	G	A	-	-	-	-	-	-	42	0	0	22	13	59.1	40	7	17.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.359281437	1.179640719	2	1.535087719	1.535087719	1	NA	NA	1	NA	NA	1	4	NA	1	1	5.82E-25	1	1.26E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	143907865	A	G	-	-	-	-	-	-	31	0	0	39	7	17.9	28	2	7.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5	2.620991218	3	2	2	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.251570858	1.251570858	1	0.666897394	0.666897394	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.04E-09	1	0.008668191	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	143918131	G	A	FAM72D	CCDS44204.1	r.?	-	-	upstream	62	0	0	45	9	20	43	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	0.998403194	0.998403194	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	1.47E-12	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	143947891	G	A	-	-	-	-	-	-	37	0	0	35	7	20	22	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	4.402297358	3.60351971	4	3	0	0	0.597702642	0.39648029	5	4	0	0	0.402297358	0.60351971	1.278862665	1.278862665	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	4.65E-10	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	52855611	C	T	ZNF610	CCDS12851.1	r.?	-	-	intronic	28	0	0	32	8	25	20	3	15	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	8	4	5	2	3	1	1	NA	NA	NA	NA	NA	NA	1.998003992	0.999001996	2	2.215789474	2.215789474	1	NA	NA	0	NA	NA	1	4	NA	1	1	3.69E-12	1	0.0001337	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	143999192	T	C	-	-	-	-	-	-	53	0	0	47	35	74.5	34	7	20.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.402297358	3.60351971	4	3	0	0	0.597702642	0.39648029	5	4	0	0	0.402297358	0.60351971	4.763763428	1.082108508	4.402297358	2.137342604	1.068671302	2	NA	NA	1	NA	NA	0	4	NA	1	1	1.43E-70	1	3.73E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	53428810	G	T	ZNF320	CCDS33095.1	r.?	-	-	intronic	44	0	0	56	8	14.3	35	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	8	4	5	2	3	1	1	NA	NA	NA	NA	NA	NA	1.142858283	1.142858283	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	4.48E-10	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	144042603	A	G	ENSG00000233536	ENST00000441886	r.?	-	-	intronic	52	0	0	41	16	39	32	7	21.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5	2.620991218	3	2	2	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	2.726886228	0.908962076	3	2.057049708	1.028524854	2	NA	NA	1	NA	NA	0	4	NA	1	1	1.40E-26	1	2.36E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	144096301	T	A	-	-	-	-	-	-	63	0	0	61	16	26.2	33	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	4.402297358	3.60351971	4	3	0	0	0.597702642	0.39648029	5	4	0	0	0.402297358	0.60351971	1.675310091	0.837655046	2	0	NA	0	NA	NA	0	NA	NA	0	NA	NA	1	1	2.50E-23	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	144101530	A	G	-	-	-	-	-	-	53	0	0	55	36	65.5	43	13	30.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.402297358	3.60351971	4	3	0	0	0.597702642	0.39648029	5	4	0	0	0.402297358	0.60351971	4.188275228	1.047068807	4	3.13338576	1.04446192	3	NA	NA	0	NA	NA	0	4	NA	1	1	3.72E-69	1	3.88E-20	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	144159915	G	T	-	-	-	-	-	-	46	0	0	37	12	32.4	38	4	10.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.351371459	5	2	3	1	2	0.648628541	1	2	NA	2	NA	0.351371459	NA	1.731257526	1.050119832	1.648628541	1.236052632	1.236052632	1	NA	NA	0	NA	NA	1	4	NA	1	1	4.03E-19	1	0.0000403	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	144232063	G	C	-	-	-	-	-	-	30	0	0	34	9	26.5	36	1	2.8	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	5	2.620991218	3	2	2	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.852884232	0.926442116	2	0.263001789	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	9.15E-14	1	0.165106833	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	144325343	G	A	ARHGAP15	CCDS2184.1	r.?	-	-	intronic	42	0	0	49	14	28.6	38	10	26.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.713716567	0.856858283	2	2.833017544	1.416508772	2	NA	NA	1	NA	NA	1	4	NA	1	1	3.50E-21	1	4.06E-15	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	144459742	G	T	-	-	-	-	-	-	48	0	0	33	11	33.3	25	3	12	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.351371459	5	2	3	1	2	0.648628541	1	2	NA	2	NA	0.351371459	NA	1.779348013	1.079289827	1.648628541	1.412631579	1.412631579	1	NA	NA	0	NA	NA	1	4	NA	1	1	8.54E-18	1	0.00026475	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	144473186	A	T	-	-	-	-	-	-	65	0	0	29	11	37.9	22	4	18.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.512974052	1.512974052	1	1.596491228	1.596491228	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.56E-18	1	0.00000425	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	144537963	A	C	-	-	-	-	-	-	37	0	0	44	5	11.4	36	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.68308982	0.68308982	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.00000288	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	144682371	G	A	-	-	-	-	-	-	48	0	0	44	5	11.4	31	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.277661109	2	1	1	1	1	0.722338891	NA	2	NA	1	NA	0.277661109	0.56908982	0.56908982	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	0.00000288	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	144767837	C	T	GTDC1	CCDS33300.1	r.?	-	-	intronic	45	0	0	44	12	27.3	40	6	15	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.635820359	0.81791018	2	1.615789474	1.615789474	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.44E-18	1	5.18E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	144847525	T	C	-	-	-	-	-	-	59	0	0	51	39	76.5	34	12	35.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.402297358	3.60351971	4	3	0	0	0.597702642	0.39648029	5	4	0	0	0.402297358	0.60351971	4.891649694	1.111158401	4.402297358	3.662533686	1.016376759	3.60351971	NA	NA	1	NA	NA	0	4	NA	1	1	2.72E-79	1	1.21E-19	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	53574473	T	C	ZNF320	CCDS33095.1	r.?	-	-	intronic	40	0	0	39	17	43.6	44	15	34.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	8	4	5	2	3	1	1	NA	NA	NA	NA	NA	NA	3.484518962	0.871129741	4	5.03722807	1.007445614	5	NA	NA	0	NA	NA	1	4	NA	1	1	3.51E-29	1	6.12E-24	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	144885759	G	A	-	-	-	-	-	-	74	0	0	36	16	44.4	31	9	29	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.77245509	0.886227545	2	2.543859649	1.271929825	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.01E-27	1	3.57E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	144892910	G	C	UTRN	CCDS34547.1	r.?	-	-	intronic	52	0	0	44	21	47.7	32	11	34.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.904191617	0.952095808	2	3.01754386	1.50877193	2	NA	NA	1	NA	NA	1	4	NA	1	1	8.60E-37	1	5.72E-18	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	144922271	C	T	GYPB	CCDS3085.1	r.?	-	-	intronic	39	0	0	45	18	40	31	3	9.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.277661109	2	1	1	1	1	0.722338891	NA	2	NA	1	NA	0.277661109	1.996806387	0.998403194	2	0.877810321	0.877810321	1	NA	NA	1	NA	NA	0	4	NA	1	1	5.76E-30	1	0.000505952	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	144930350	A	G	PDE4DIP	CCDS30824.1	r.?	-	-	intronic	120	0	0	98	15	15.3	86	14	16.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	0.763778443	0.763778443	1	1.918824561	0.959412281	2	NA	NA	0	NA	NA	1	4	NA	1	1	3.78E-18	1	1.98E-17	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	145010620	C	T	PLEC	CCDS43772.1	r.?	-	-	intronic	11	0	0	35	9	25.7	18	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	10.71757322	2.620991218	8	2	2	0	0.282426781	0.379008782	8	2	3	1	0.717573219	0.620991218	3.266364421	0.99510656	3.282426781	0	NA	0	NA	NA	0	NA	NA	0	NA	NA	1	1	1.23E-13	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	145157087	G	A	-	-	-	-	-	-	41	0	0	36	15	41.7	34	3	8.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.351371459	5	2	3	1	2	0.648628541	1	2	NA	2	NA	0.351371459	NA	2.228192557	1.114096279	2	1.035929825	1.035929825	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.54E-25	1	0.000666058	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	145157796	G	A	PRELID2	CCDS34262.1	r.?	-	-	intronic	20	0	0	45	9	20	16	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.798403194	0.798403194	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	1.47E-12	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	145168135	G	C	ZEB2	CCDS2186.1	r.?	-	-	intronic	45	0	0	36	17	47.2	34	11	32.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.828231537	1.414115768	2	3.490105263	1.745052632	2	NA	NA	1	NA	NA	1	4	NA	1	1	6.00E-30	1	1.26E-17	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	145174929	C	T	-	-	-	-	-	-	43	0	0	79	15	19	57	5	8.8	1	0	0	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	0.948483034	0.948483034	1	1.035929825	1.035929825	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.22E-19	1	0.0000105	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	145193348	T	C	-	-	-	-	-	-	134	0	0	126	9	7.1	97	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	0.354433134	0.354433134	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	0.000000019	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	145291532	C	T	-	-	-	-	-	-	40	0	0	50	29	58	22	6	27.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.402297358	3.60351971	4	3	0	0	0.597702642	0.39648029	5	4	0	0	0.402297358	0.60351971	3.708701729	0.927175432	4	2.832497723	0.944165908	3	NA	NA	0	NA	NA	0	4	NA	1	1	1.13E-53	1	1.09E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	145358637	T	A	-	-	-	-	-	-	53	0	0	34	5	14.7	29	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.277661109	2	1	1	1	1	0.722338891	NA	2	NA	1	NA	0.277661109	0.733826347	0.733826347	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	0.000000771	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	145405510	G	A	-	-	-	-	-	-	33	0	0	34	20	58.8	29	6	20.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.347305389	1.173652695	2	1.815789474	1.815789474	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.24E-37	1	6.72E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	145427654	G	A	-	-	-	-	-	-	47	0	0	40	10	25	36	1	2.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.351371459	5	2	3	1	2	0.648628541	1	2	NA	2	NA	0.351371459	NA	1.335846857	1.335846857	1	0.329614035	0.329614035	1	NA	NA	0	NA	NA	1	4	NA	1	1	7.22E-15	1	0.165106833	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	53762130	G	A	VN1R2	CCDS12862.1	r.586g>a	c.502G>A	p.A168T	missense	47	0	0	53	15	28.3	38	1	2.6	293	4	1.4	231	43	18.6	245	13	5.3	1.55E-06	TRUE	TRUE	6	8	4	5	2	3	1	1	NA	NA	NA	NA	NA	NA	2.261740519	1.130870259	2	0.384070175	0.384070175	1	1.48651497	0.743257485	2	0.782912281	0.782912281	1	4	3	1	0.060860517	1.60E-22	4.98E-53	0.173434892	5.54E-10	YES	1_1	0_1	somatic	custom.pulldown.HiSeq
PD9852b	5	145605772	T	G	RBM27	CCDS43378.1	r.?	-	-	intronic	42	0	0	34	18	52.9	28	5	17.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.111776447	1.055888224	2	1.570175439	1.570175439	1	NA	NA	1	NA	NA	1	4	NA	1	1	7.79E-33	1	0.000000279	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	145622287	T	G	-	-	-	-	-	-	41	0	0	28	6	21.4	23	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.854291417	0.854291417	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	5.36E-09	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	145626616	G	A	-	-	-	-	-	-	23	0	0	13	9	69.2	13	2	15.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.76247505	1.381237525	2	1.350877193	1.350877193	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.37E-18	1	0.001879825	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	145670938	G	A	RNF115	CCDS922.1	r.?	-	-	intronic	16	0	0	26	8	30.8	7	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.537540918	1.537540918	1	0	0	1	NA	NA	0	NA	NA	1	4	NA	1	1	5.63E-13	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	145703240	C	T	KIFC2	CCDS6427.1	r.?	-	-	downstream	16	0	0	30	6	20	3	0	0	1	0	0	0	0	NA	0	0	NA	1	FALSE	FALSE	10.71757322	2.620991218	8	2	2	0	0.282426781	0.379008782	8	2	3	1	0.717573219	0.620991218	2.541917837	1.113690857	2.282426781	0	NA	0	NA	NA	0	NA	NA	0	NA	NA	1	1	8.37E-09	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	145707653	C	T	-	-	-	-	-	-	53	0	0	50	6	12	28	1	3.6	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	2.277661109	2	1	1	1	1	0.722338891	NA	2	NA	1	NA	0.277661109	0.599041916	0.599041916	1	0.325785274	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	0.000000206	1	0.130947004	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	146066548	A	T	-	-	-	-	-	-	40	0	0	45	4	8.9	28	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	4.402297358	3.60351971	4	3	0	0	0.597702642	0.39648029	5	4	0	0	0.402297358	0.60351971	0.569093886	0.569093886	1	0	NA	0	NA	NA	0	NA	NA	0	NA	NA	1	1	0.0000791	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	146084314	A	T	-	-	-	-	-	-	34	0	0	54	22	40.7	28	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	4.402297358	3.60351971	4	3	0	0	0.597702642	0.39648029	5	4	0	0	0.402297358	0.60351971	2.602485524	1.083331968	2.402297358	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	1.60E-36	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	146174703	G	A	ZNF16	CCDS6437.1	r.?	-	-	intronic	24	0	0	59	12	20.3	38	10	26.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	10.71757322	2.620991218	8	2	2	0	0.282426781	0.379008782	8	2	3	1	0.717573219	0.620991218	2.580046605	1.13039622	2.282426781	2.470338234	1.235169117	2	NA	NA	1	NA	NA	0	4	NA	1	1	2.20E-16	1	4.06E-15	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	146192349	A	T	PLSCR2	CCDS3134.1	r.?	-	-	intronic	42	0	0	52	15	28.8	28	3	10.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.351371459	5	2	3	1	2	0.648628541	1	2	NA	2	NA	0.351371459	NA	1.538895579	0.93343985	1.648628541	1.259596491	1.259596491	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.15E-22	1	0.000372895	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	146306518	G	C	MIR513A2	ENST00000385249	r.?	-	-	downstream	38	0	0	41	16	39	38	2	5.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.402297358	3.60351971	4	3	0	0	0.597702642	0.39648029	5	4	0	0	0.402297358	0.60351971	2.493782197	1.03808223	2.402297358	0.549898825	0.549898825	1	NA	NA	0	NA	NA	0	4	NA	1	1	1.40E-26	1	0.015598339	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	146314465	C	A	PLSCR5	CCDS46931.1	r.?	-	-	intronic	47	0	0	47	12	25.5	29	3	10.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.351371459	5	2	3	1	2	0.648628541	1	2	NA	2	NA	0.351371459	NA	1.362563794	1.362563794	1	1.212508772	1.212508772	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.09E-17	1	0.000414371	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	146403197	C	A	SMAD1	CCDS3765.1	r.247+7c>a	c.?	p.?	splice region	6	0	0	34	7	20.6	6	1	16.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.854484501	2.277661109	2	1	0	1	0.145515499	0.722338891	2	2	1	1	0.854484501	0.277661109	0.998379097	0.998379097	1	1.511281686	1.511281686	1	NA	NA	0	NA	NA	0	4	NA	1	1	3.73E-10	1	0.029627491	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	146513150	C	T	GRM1	CCDS47497.1	r.?	-	-	intronic	47	0	0	28	11	39.3	22	5	22.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.568862275	1.568862275	1	1.99122807	1.99122807	1	NA	NA	1	NA	NA	1	4	NA	1	1	9.70E-19	1	7.67E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	146544660	G	T	-	-	-	-	-	-	45	0	0	29	14	48.3	27	10	37	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.928143713	0.964071856	2	3.245614035	1.622807018	2	NA	NA	1	NA	NA	1	4	NA	1	1	4.41E-25	1	7.62E-17	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	146614539	G	T	-	-	-	-	-	-	45	0	0	48	22	45.8	50	12	24	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	2.286343313	1.143171657	2	2.825263158	0.941754386	3	NA	NA	0	NA	NA	1	4	NA	1	1	5.76E-38	1	2.49E-17	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	146649688	C	T	-	-	-	-	-	-	37	0	0	52	5	9.6	29	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	4.402297358	3.60351971	4	3	0	0	0.597702642	0.39648029	5	4	0	0	0.402297358	0.60351971	0.613854079	0.613854079	1	0	NA	0	NA	NA	0	NA	NA	0	NA	NA	1	1	0.00000668	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	146819247	C	T	ZNF827	CCDS34072.1	r.?	-	-	intronic	32	0	0	36	21	58.3	30	5	16.7	1	0	0	0	0	NA	0	0	NA	1	TRUE	FALSE	2.854484501	2.277661109	2	1	0	1	0.145515499	0.722338891	2	2	1	1	0.854484501	0.277661109	2.825509774	1.412754887	2	1.511281686	1.511281686	1	NA	NA	0	NA	NA	0	4	NA	1	1	2.47E-39	1	0.000000401	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	146960086	C	G	-	-	-	-	-	-	48	0	0	54	35	64.8	34	12	35.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.402297358	3.60351971	4	3	0	0	0.597702642	0.39648029	5	4	0	0	0.402297358	0.60351971	4.143515035	1.035878759	4	3.662533686	1.016376759	3.60351971	NA	NA	1	NA	NA	0	4	NA	1	1	4.87E-67	1	1.21E-19	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	146971376	A	T	CNTNAP2	CCDS5889.1	r.?	-	-	intronic	60	0	0	29	15	51.7	32	5	15.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.063872255	1.031936128	2	1.368421053	1.368421053	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.22E-27	1	0.000000562	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	146976986	G	T	-	-	-	-	-	-	38	0	0	60	8	13.3	41	3	7.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.796938124	0.796938124	1	0.786350877	0.786350877	1	NA	NA	1	NA	NA	1	4	NA	1	1	7.93E-10	1	0.001155993	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	57363904	G	T	MIMT1	ENST00000506016	r.?	-	-	downstream	51	0	0	61	21	34.4	56	3	5.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6.83740247	8	5	5	1	3	0.16259753	1	5	NA	2	NA	0.83740247	NA	3.037319943	1.012439981	3	0.797684211	0.797684211	1	NA	NA	0	NA	NA	1	4	NA	1	1	4.80E-33	1	0.00284314	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	147058294	C	A	-	-	-	-	-	-	35	0	0	60	14	23.3	39	5	12.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.342151959	5	3	3	1	2	0.657848041	1	4	NA	1	NA	0.342151959	NA	1.475861127	1.475861127	1	1.506807018	1.506807018	1	NA	NA	0	NA	NA	1	4	NA	1	1	8.54E-20	1	0.00000156	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	147107097	G	C	C6orf103	CCDS47498.1	r.?	-	-	intronic	29	0	0	36	8	22.2	15	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.886227545	0.886227545	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	1.04E-11	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	147123898	A	T	C6orf103	CCDS47498.1	r.?	-	-	intronic	47	0	0	35	19	54.3	33	7	21.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.167664671	1.083832335	2	1.859649123	1.859649123	1	NA	NA	1	NA	NA	1	4	NA	1	1	7.18E-35	1	2.98E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	147151409	C	G	ENSG00000250673	ENST00000504313	r.?	-	-	downstream	18	0	0	62	7	11.3	32	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	2.854484501	2.277661109	2	1	0	1	0.145515499	0.722338891	2	2	1	1	0.854484501	0.277661109	0.547654553	0.640918065	0.854484501	0	NA	0	NA	NA	0	NA	NA	0	NA	NA	1	1	3.02E-08	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	147250426	G	T	-	-	-	-	-	-	40	0	0	44	7	15.9	33	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.952730539	0.952730539	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	2.55E-09	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	147314920	G	A	-	-	-	-	-	-	57	0	0	67	16	23.9	34	4	11.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.342151959	5	3	3	1	2	0.657848041	1	4	NA	1	NA	0.342151959	NA	1.513866135	1.127939444	1.342151959	1.389087719	1.389087719	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.35E-22	1	0.0000257	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	57536796	T	G	-	-	-	-	-	-	52	0	0	55	5	9.1	43	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6.83740247	8	5	5	1	3	0.16259753	1	5	NA	2	NA	0.83740247	NA	0.803477078	0.803477078	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	0.00000883	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	147331183	T	C	SLC10A7	CCDS34073.1	r.?	-	-	intronic	45	0	0	37	6	16.2	31	0	0	40	0	0	161	22	13.7	172	0	0	1	FALSE	FALSE	2.854484501	2.277661109	2	1	0	1	0.145515499	0.722338891	2	2	1	1	0.854484501	0.277661109	0.785133076	0.785133076	1	0	NA	0	0.663970564	0.777042256	0.854484501	0	NA	0	NA	NA	1	1	3.18E-08	8.60E-25	1	1	YES	1_1	0_0	somatic	custom.pulldown.HiSeq
PD9852b	3	147340911	C	T	-	-	-	-	-	-	51	0	0	53	10	18.9	43	1	2.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.342151959	5	3	3	1	2	0.657848041	1	4	NA	1	NA	0.342151959	NA	1.197157738	1.197157738	1	0.270754386	0.270754386	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.57E-13	1	0.193893409	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	147455205	C	G	-	-	-	-	-	-	59	0	0	72	10	13.9	33	4	12.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.342151959	5	3	3	1	2	0.657848041	1	4	NA	1	NA	0.342151959	NA	0.880449342	0.880449342	1	1.424403509	1.424403509	1	NA	NA	0	NA	NA	1	4	NA	1	1	3.95E-12	1	0.0000228	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	147492219	A	T	SPINK5	CCDS47300.1	r.?	-	-	intronic	44	0	0	40	12	30	31	3	9.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.19760479	1.19760479	1	0.850877193	0.850877193	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.20E-18	1	0.000505952	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	147540641	G	A	-	-	-	-	-	-	60	0	0	57	7	12.3	40	2	5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.737017964	0.737017964	1	0.538596491	0.538596491	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.66E-08	1	0.017193422	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	147668612	A	G	-	-	-	-	-	-	47	0	0	53	16	30.2	41	9	22	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.342151959	5	3	3	1	2	0.657848041	1	4	NA	1	NA	0.342151959	NA	1.912918714	0.956459357	2	2.589824561	0.863274854	3	NA	NA	0	NA	NA	1	4	NA	1	1	1.90E-24	1	5.92E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	147679944	C	A	-	-	-	-	-	-	51	0	0	65	10	15.4	41	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.342151959	5	3	3	1	2	0.657848041	1	4	NA	1	NA	0.342151959	NA	0.975461861	0.975461861	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	1.36E-12	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	147712832	A	G	-	-	-	-	-	-	49	0	0	50	28	56	38	9	23.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.342151959	5	3	3	1	2	0.657848041	1	4	NA	1	NA	0.342151959	NA	3.547134039	1.061332364	3.342151959	2.789947368	0.929982456	3	NA	NA	0	NA	NA	0	4	NA	1	1	2.97E-51	1	2.79E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	147818032	C	T	FBXO38	CCDS4290.1	r.3163c>u	c.2995C>T	p.R999C	missense	50	0	0	35	11	31.4	20	1	5	183	0	0	182	38	20.9	210	2	1	0.621806422	TRUE	TRUE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.253493014	1.253493014	1	0.438596491	0.438596491	1	0.834331337	0.834331337	1	0.087719298	0.087719298	1	4	2	1	1	1.82E-17	4.11E-49	0.09538952	0.282672983	YES	1_1	0_0	somatic	custom.pulldown.HiSeq
PD9852b	X	148029254	C	T	AFF2	CCDS14684.1	r.?	-	-	intronic	43	0	0	59	39	66.1	32	11	34.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.402297358	3.60351971	4	3	0	0	0.597702642	0.39648029	5	4	0	0	0.402297358	0.60351971	4.226641108	0.960098959	4.402297358	3.56915464	0.990463471	3.60351971	NA	NA	0	NA	NA	0	4	NA	1	1	4.61E-75	1	5.72E-18	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	148045523	G	A	-	-	-	-	-	-	61	0	0	37	16	43.2	31	6	19.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.724550898	0.862275449	2	1.701754386	1.701754386	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.78E-27	1	1.03E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	148097325	T	C	-	-	-	-	-	-	52	0	0	33	12	36.4	30	2	6.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.854484501	2.277661109	2	1	0	1	0.145515499	0.722338891	2	2	1	1	0.854484501	0.277661109	1.764126171	0.882063085	2	0.606322593	0.606322593	1	NA	NA	0	NA	NA	0	4	NA	1	1	7.86E-20	1	0.009909649	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	148210665	G	A	-	-	-	-	-	-	56	0	0	56	5	8.9	37	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.533289421	0.533289421	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.00000965	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	57679552	G	A	DUXA	CCDS33126.1	r.?	-	-	upstream	37	0	0	38	6	15.8	31	5	16.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6.83740247	8	5	5	1	3	0.16259753	1	5	NA	2	NA	0.83740247	NA	1.395048113	1.395048113	1	2.378280702	1.189140351	2	NA	NA	0	NA	NA	1	4	NA	1	1	3.76E-08	1	0.000000476	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	148827592	G	A	MBD5	CCDS33302.1	r.?	-	-	intronic	49	0	0	49	13	26.5	41	8	19.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.587884232	0.793942116	2	2.100526316	1.050263158	2	NA	NA	1	NA	NA	1	4	NA	1	1	2.71E-19	1	3.22E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	58712947	G	C	ZNF274	ENST00000326804	r.?	-	-	intronic	38	0	0	66	24	36.4	53	6	11.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6.83740247	8	5	5	1	3	0.16259753	1	5	NA	2	NA	0.83740247	NA	3.213908311	1.016224253	3.16259753	1.66922807	1.66922807	1	NA	NA	0	NA	NA	1	4	NA	1	1	3.04E-38	1	0.000000293	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	148918266	G	A	CP	CCDS3141.1	r.?	-	-	intronic	45	0	0	45	15	33.3	34	9	26.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.339473093	5	2	3	1	2	0.660526907	1	2	NA	2	NA	0.339473093	NA	1.775385857	1.069170183	1.660526907	3.119561404	1.039853801	3	NA	NA	0	NA	NA	1	4	NA	1	1	9.14E-24	1	9.15E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	148928115	G	C	-	-	-	-	-	-	46	0	0	123	9	7.3	39	0	0	1	0	0	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.437417166	0.437417166	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	1.54E-08	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	149050613	G	A	MBD5	CCDS33302.1	r.?	-	-	intronic	32	0	0	48	18	37.5	35	5	14.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.247005988	1.123502994	2	1.540385965	1.540385965	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.42E-29	1	0.000000895	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	3262856	A	G	C20orf194	CCDS42851.1	r.?	-	-	intronic	51	0	0	39	5	12.8	28	1	3.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	4.362325493	2	2	1	2	1	0.637674507	NA	3	NA	2	NA	0.362325493	0.638978044	0.638978044	1	0.400833191	0.400833191	1	NA	NA	0	NA	NA	0	4	NA	1	1	0.00000156	1	0.130947004	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	149176078	G	A	-	-	-	-	-	-	43	1	2.3	43	17	39.5	37	11	29.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.339473093	5	2	3	1	2	0.660526907	1	2	NA	2	NA	0.339473093	NA	2.105938179	1.05296909	2	3.496263158	1.165421053	3	NA	NA	0	NA	NA	1	4	NA	0.193893409	1	2.84E-28	1	3.70E-17	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	149349329	A	G	-	-	-	-	-	-	67	0	0	61	17	27.9	49	5	10.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.671772455	0.835886228	2	1.098736842	1.098736842	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.33E-25	1	0.00000496	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	149365911	G	A	-	-	-	-	-	-	54	0	0	51	18	35.3	34	9	26.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.115181637	1.057590818	2	2.854561404	1.427280702	2	NA	NA	1	NA	NA	1	4	NA	1	1	9.10E-29	1	9.15E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	149448403	C	A	-	-	-	-	-	-	32	0	0	83	5	6	33	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	4.402297358	3.60351971	4	3	0	0	0.597702642	0.39648029	5	4	0	0	0.402297358	0.60351971	0.3836588	0.953669698	0.402297358	0	NA	0	NA	NA	0	NA	NA	0	NA	NA	1	1	0.0000656	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	6711910	C	A	-	-	-	-	-	-	48	0	0	39	10	25.6	36	10	27.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	4.362325493	2	2	1	2	1	0.637674507	NA	3	NA	2	NA	0.362325493	1.277956088	1.277956088	1	3.095322978	1.310286405	2.362325493	NA	NA	0	NA	NA	1	4	NA	1	1	5.44E-15	1	2.21E-15	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	149606786	C	T	-	-	-	-	-	-	61	0	0	31	10	32.3	31	8	25.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.935421158	0.967710579	2	2.779157895	1.389578947	2	NA	NA	1	NA	NA	1	4	NA	1	1	3.94E-16	1	2.78E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	149635494	T	C	TAB2	CCDS5214.1	r.?	-	-	upstream	46	0	0	25	11	44	35	7	20	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.756487026	0.878243513	2	1.754385965	1.754385965	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.04E-19	1	4.65E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	149682714	C	T	-	-	-	-	-	-	91	0	0	72	15	20.8	47	1	2.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.246339321	1.246339321	1	0.226210526	0.226210526	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.70E-20	1	0.209895027	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	149736243	A	G	-	-	-	-	-	-	62	0	0	55	10	18.2	57	3	5.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.090546906	1.090546906	1	0.570912281	0.570912281	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.33E-13	1	0.002989991	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	149775023	T	C	-	-	-	-	-	-	32	0	0	44	6	13.6	40	4	10	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.339473093	5	2	3	1	2	0.660526907	1	2	NA	2	NA	0.339473093	NA	0.725082512	0.725082512	1	1.177192982	1.177192982	1	NA	NA	0	NA	NA	1	4	NA	1	1	9.37E-08	1	0.0000495	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	149820571	T	G	HIST2H3A	CCDS30850.1	r.?	-	-	upstream	50	0	0	45	10	22.2	49	5	10.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.330227545	1.330227545	1	1.098736842	1.098736842	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.66E-14	1	0.00000496	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	149910079	C	A	OTUD7B	CCDS41389.1	r.?	-	-	downstream	49	0	0	43	8	18.6	33	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.11451497	1.11451497	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	4.85E-11	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	150070839	A	T	NUP43	CCDS5218.1	r.?	-	-	upstream	19	0	0	24	12	50	2	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.996007984	0.998003992	2	0	0	1	NA	NA	1	NA	NA	1	4	NA	1	1	6.25E-22	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	150379404	G	C	-	-	-	-	-	-	48	0	0	54	39	72.2	39	7	17.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.402297358	3.60351971	4	3	0	0	0.597702642	0.39648029	5	4	0	0	0.402297358	0.60351971	4.616694221	1.048701132	4.402297358	1.857205467	1.857205467	1	NA	NA	0	NA	NA	0	4	NA	1	1	1.46E-77	1	1.04E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	150392156	G	A	ULBP3	CCDS5225.1	r.?	-	-	upstream	18	0	0	27	11	40.7	21	4	19	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.624750499	0.81237525	2	1.666666667	1.666666667	1	NA	NA	1	NA	NA	1	4	NA	1	1	5.92E-19	1	0.00000349	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	150420868	G	C	GIMAP1	CCDS5906.1	r.3916g>c	c.?	p.?	3'UTR variant	43	0	0	32	4	12.5	31	0	0	2	0	0	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.499001996	0.499001996	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.0000201	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	150516917	T	C	-	-	-	-	-	-	48	0	0	59	44	74.6	35	10	28.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.402297358	3.60351971	4	3	0	0	0.597702642	0.39648029	5	4	0	0	0.402297358	0.60351971	4.770157741	1.083561003	4.402297358	2.967378567	0.989126189	3	NA	NA	1	NA	NA	0	4	NA	1	1	2.11E-88	1	1.60E-15	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	7079054	G	A	-	-	-	-	-	-	51	0	0	38	12	31.6	43	8	18.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	4.362325493	2	2	1	2	1	0.637674507	NA	3	NA	2	NA	0.362325493	1.577477046	1.577477046	1	2.070971489	1.035485745	2	NA	NA	0	NA	NA	1	4	NA	1	1	5.86E-19	1	4.85E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	10115626	G	T	-	-	-	-	-	-	48	0	0	46	6	13	28	5	17.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	4.362325493	2	2	1	2	1	0.637674507	NA	3	NA	2	NA	0.362325493	0.648962076	0.648962076	1	1.993031702	1.993031702	1	NA	NA	0	NA	NA	1	4	NA	1	1	0.000000123	1	0.000000279	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	150783230	G	T	AGAP3	CCDS43681.1	r.?	-	-	upstream	17	0	0	14	3	21.4	7	1	14.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.854291417	0.854291417	1	1.254385965	1.254385965	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.0000437	1	0.034479353	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	23113874	C	G	-	-	-	-	-	-	42	0	0	45	7	15.6	26	2	7.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	4.362325493	2	2	1	2	1	0.637674507	NA	3	NA	2	NA	0.362325493	0.778754491	0.778754491	1	0.857337659	0.857337659	1	NA	NA	0	NA	NA	1	4	NA	1	1	0.000000003	1	0.007502227	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	150929441	T	C	-	-	-	-	-	-	36	0	0	62	35	56.5	37	3	8.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.402297358	3.60351971	4	3	0	0	0.597702642	0.39648029	5	4	0	0	0.402297358	0.60351971	3.612787029	1.061866924	3.402297358	0.840411412	0.840411412	1	NA	NA	0	NA	NA	0	4	NA	1	1	7.14E-64	1	0.000855237	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	151029150	G	T	MLLT11	CCDS982.1	r.?	-	-	upstream	47	0	0	39	14	35.9	42	5	11.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.151133733	1.075566866	2	1.281859649	1.281859649	1	NA	NA	1	NA	NA	1	4	NA	1	1	8.19E-23	1	0.00000228	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	24214651	G	A	-	-	-	-	-	-	36	0	0	24	10	41.7	24	2	8.3	0	0	NA	2	0	0	0	0	NA	1	TRUE	FALSE	3	4.362325493	2	2	1	2	1	0.637674507	NA	3	NA	2	NA	0.362325493	2.081670659	1.040835329	2	0.924143191	0.924143191	1	0	NA	0	NA	NA	0	4	NA	1	1	1.80E-17	1	0.006413403	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	151265911	C	T	MTHFD1L	CCDS5228.1	r.?	-	-	intronic	46	0	0	27	6	22.2	28	1	3.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.886227545	0.886227545	1	0.315789474	0.315789474	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.23E-09	1	0.130947004	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	151286126	A	G	PI4KB	CCDS993.1	r.?	-	-	intronic	51	0	0	44	6	13.6	37	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.814914172	0.814914172	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	9.37E-08	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	24504945	C	T	TMEM90B	CCDS13164.1	r.?	-	-	intronic	32	0	0	42	14	33.3	34	9	26.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	4.362325493	2	2	1	2	1	0.637674507	NA	3	NA	2	NA	0.362325493	1.662341317	0.831170659	2	2.950577659	1.249014019	2.362325493	NA	NA	0	NA	NA	1	4	NA	1	1	2.83E-22	1	9.15E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	30307211	G	C	BCL2L1	CCDS13189.1	r.?	-	-	intronic	39	0	0	41	9	22	27	1	3.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	4.362325493	2	2	1	2	1	0.637674507	NA	3	NA	2	NA	0.362325493	1.098243513	1.098243513	1	0.411967447	0.411967447	1	NA	NA	0	NA	NA	1	4	NA	1	1	5.92E-13	1	0.126579904	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	151567909	C	A	GABRA3	CCDS14706.1	r.?	-	-	intronic	48	0	0	55	5	9.1	27	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	4.402297358	3.60351971	4	3	0	0	0.597702642	0.39648029	5	4	0	0	0.402297358	0.60351971	0.581882513	0.581882513	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	0.00000883	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	151636086	C	T	AKAP12	CCDS5229.1	r.?	-	-	intronic	33	0	0	36	20	55.6	20	4	20	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.219560878	1.109780439	2	1.754385965	1.754385965	1	NA	NA	1	NA	NA	1	4	NA	1	1	6.46E-37	1	0.00000284	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	151653832	A	T	-	-	-	-	-	-	34	0	0	37	15	40.5	34	5	14.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.426766467	1.213383234	2	1.583473684	1.583473684	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.58E-25	1	0.000000771	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	151703841	C	T	ZBTB2	CCDS5231.1	r.?	-	-	intronic	23	0	0	30	16	53.3	14	8	57.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.127744511	1.063872255	2	5.00877193	2.504385965	2	NA	NA	1	NA	NA	1	4	NA	1	1	2.08E-29	1	1.14E-15	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	151761583	G	A	-	-	-	-	-	-	39	0	0	43	8	18.6	31	1	3.2	159	0	0	144	26	18.1	143	1	0.7	0.762407445	TRUE	TRUE	3.339473093	5	2	3	1	2	0.660526907	1	2	NA	2	NA	0.339473093	NA	0.991656965	0.991656965	1	0.376701754	0.376701754	1	0.96499952	0.96499952	1	0.082403509	0.082403509	1	4	2	1	1	4.85E-11	2.48E-32	0.143917729	0.511684459	YES	1_1	0_0	somatic	custom.pulldown.HiSeq
PD9852b	4	151851416	G	T	LRBA	CCDS3773.1	r.?	-	-	intronic	44	0	0	45	8	17.8	37	7	18.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.854484501	2.277661109	2	1	0	1	0.145515499	0.722338891	2	2	1	1	0.854484501	0.277661109	0.862677084	0.862677084	1	1.710372686	1.710372686	1	NA	NA	0	NA	NA	0	4	NA	1	1	7.14E-11	1	7.05E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	151910328	C	T	CSAG1	CCDS14711.1	r.?	-	-	downstream	45	0	0	37	7	18.9	29	2	6.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.402297358	3.60351971	4	3	0	0	0.597702642	0.39648029	5	4	0	0	0.402297358	0.60351971	1.208525219	1.208525219	1	0.715906018	0.715906018	1	NA	NA	0	NA	NA	0	4	NA	1	1	7.05E-10	1	0.009279585	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	36197038	C	A	-	-	-	-	-	-	56	0	0	33	5	15.2	46	2	4.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	4.362325493	2	2	1	2	1	0.637674507	NA	3	NA	2	NA	0.362325493	0.758786427	0.758786427	1	0.478772979	0.478772979	1	NA	NA	0	NA	NA	1	4	NA	1	1	0.00000066	1	0.022369545	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	152171051	C	G	-	-	-	-	-	-	49	0	0	49	6	12.2	39	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.731025948	0.731025948	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.000000182	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	37183648	G	A	RALGAPB	CCDS13305.1	r.?	-	-	intronic	47	0	0	52	9	17.3	34	3	8.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4.362325493	2	2	2	2	1	0.637674507	NA	3	NA	2	NA	0.362325493	1.036618762	1.036618762	1	0.979814468	0.979814468	1	NA	NA	0	NA	NA	1	4	NA	1	1	5.92E-12	1	0.000666058	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	152426852	G	C	-	-	-	-	-	-	39	0	0	53	11	20.8	24	6	25	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.339473093	5	2	3	1	2	0.660526907	1	2	NA	2	NA	0.339473093	NA	1.108949725	1.108949725	1	2.942982456	0.980994152	3	NA	NA	0	NA	NA	1	4	NA	1	1	3.07E-15	1	1.95E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	152497731	C	A	FAM160A1	CCDS47146.1	r.?	-	-	intronic	45	0	0	49	11	22.4	33	0	0	94	0	0	263	31	11.8	255	3	1.2	0.469648461	FALSE	FALSE	2.854484501	2.277661109	2	1	0	1	0.145515499	0.722338891	2	2	1	1	0.854484501	0.277661109	1.085616105	1.085616105	1	0	NA	0	0.571887055	0.571887055	1	0.108595091	NA	0	NA	NA	1	1	1.19E-15	3.04E-32	1	0.136755718	YES	1_1	0_0	somatic	custom.pulldown.HiSeq
PD9852b	4	152509844	A	C	FAM160A1	CCDS47146.1	r.?	-	-	intronic	60	0	0	56	30	53.6	43	6	14	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.854484501	2.277661109	2	1	0	1	0.145515499	0.722338891	2	2	1	1	0.854484501	0.277661109	2.597724251	1.298862126	2	1.266942731	1.266942731	1	NA	NA	0	NA	NA	0	4	NA	1	1	5.46E-54	1	8.13E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	152686035	T	C	LCE4A	CCDS1022.1	r.?	-	-	downstream	49	0	0	49	19	38.8	39	7	17.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.324902196	1.162451098	2	1.928175439	1.928175439	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.12E-31	1	1.04E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	152726605	G	A	-	-	-	-	-	-	41	0	0	27	18	66.7	25	7	28	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.662674651	1.331337325	2	2.456140351	1.228070175	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.71E-35	1	3.47E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	152728211	C	T	-	-	-	-	-	-	27	0	0	21	4	19	20	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.758483034	0.758483034	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.00000349	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	152800908	G	A	-	-	-	-	-	-	52	0	0	33	8	24.2	23	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.966067864	0.966067864	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	4.85E-12	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	43040773	G	T	HNF4A	CCDS13330.1	r.?	-	-	intronic	40	0	0	58	15	25.9	42	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	5	2	3	2	2	1	1	NA	NA	NA	NA	NA	NA	1.551932136	0.775966068	2	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	7.42E-22	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	153069672	C	T	GRIA1	CCDS4322.1	r.?	-	-	intronic	35	0	0	29	12	41.4	20	3	15	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.652694611	0.826347305	2	1.315789474	1.315789474	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.17E-20	1	0.0001337	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	153123732	G	A	L1CAM	CCDS14733.1	r.?	-	-	downstream	21	0	0	41	6	14.6	27	1	3.7	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	4.402297358	3.60351971	4	3	0	0	0.597702642	0.39648029	5	4	0	0	0.402297358	0.60351971	0.933569746	0.933569746	1	0.383891633	NA	0	NA	NA	0	NA	NA	0	NA	NA	1	1	6.05E-08	1	0.126579904	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	47136132	G	T	-	-	-	-	-	-	54	0	0	65	25	38.5	32	11	34.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	5	3	3	3	2	1	1	NA	NA	NA	NA	NA	NA	3.076926148	1.025642049	3	4.04954386	1.349847953	3	NA	NA	1	NA	NA	0	4	NA	1	1	1.60E-40	1	5.72E-18	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	48922691	C	A	-	-	-	-	-	-	21	0	0	47	9	19.1	21	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	6	5	3	3	3	2	1	1	NA	NA	NA	NA	NA	NA	1.52647505	1.52647505	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	2.24E-12	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	153186313	A	G	-	-	-	-	-	-	64	0	0	39	5	12.8	33	8	24.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.854484501	2.277661109	2	1	0	1	0.145515499	0.722338891	2	2	1	1	0.854484501	0.277661109	0.62035206	0.62035206	1	2.190001006	1.714070336	1.277661109	NA	NA	0	NA	NA	0	4	NA	1	1	0.00000156	1	4.85E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	153220867	A	G	FMNL2	CCDS46429.1	r.?	-	-	intronic	60	1	1.7	46	19	41.3	43	5	11.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.474702595	1.237351297	2	1.24954386	1.24954386	1	NA	NA	1	NA	NA	1	4	NA	0.259739042	1	6.97E-32	1	0.00000257	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	153235846	G	C	-	-	-	-	-	-	41	0	0	32	6	18.8	33	1	3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.750499002	0.750499002	1	0.263157895	0.263157895	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.27E-08	1	0.15245715	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	153285602	T	A	FMNL2	CCDS46429.1	r.?	-	-	intronic	43	0	0	42	7	16.7	24	0	0	0	0	NA	0	0	NA	2	0	0	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.000666667	1.000666667	1	0	0	1	NA	NA	1	0	0	1	3	NA	1	1	1.81E-09	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	153401218	G	T	RGS17	CCDS5244.1	r.?	-	-	intronic	42	0	0	28	16	57.1	17	5	29.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.279441118	1.139720559	2	2.578947368	1.289473684	2	NA	NA	1	NA	NA	1	4	NA	1	1	4.39E-30	1	1.84E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	54014906	G	A	-	-	-	-	-	-	57	0	0	61	27	44.3	27	5	18.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	5	3	3	3	2	1	1	NA	NA	NA	NA	NA	NA	3.540463074	1.180154358	3	2.177807018	2.177807018	1	NA	NA	1	NA	NA	0	4	NA	1	1	9.98E-46	1	0.00000023	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	63220969	G	A	-	-	-	-	-	-	47	0	0	28	13	46.4	30	4	13.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.852295409	0.926147705	2	1.166666667	1.166666667	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.26E-23	1	0.0000154	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	57278122	C	T	NPEPL1	CCDS46621.1	r.?	-	-	intronic	41	0	0	52	16	30.8	21	4	19	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	5	3	3	3	2	1	1	NA	NA	NA	NA	NA	NA	2.461540918	0.820513639	3	2.236666667	2.236666667	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.33E-24	1	0.00000349	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	59732466	C	A	-	-	-	-	-	-	28	0	0	37	14	37.8	30	4	13.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7.617024881	5	4	3	3	2	0.382975119	1	5	NA	3	NA	0.617024881	NA	3.632217441	1.004200292	3.617024881	1.565666667	1.565666667	1	NA	NA	1	NA	NA	0	4	NA	1	1	3.35E-23	1	0.0000154	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	153599537	A	C	GALNT10	CCDS4325.1	r.?	-	-	intronic	48	0	0	46	8	17.4	21	2	9.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.694610778	0.694610778	1	0.833333333	0.833333333	1	NA	NA	1	NA	NA	1	4	NA	1	1	8.61E-11	1	0.004928472	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	63403285	C	G	-	-	-	-	-	-	59	0	0	31	10	32.3	24	1	4.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.289421158	1.289421158	1	0.368421053	0.368421053	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.94E-16	1	0.113346489	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	153639353	T	G	-	-	-	-	-	-	19	0	0	27	7	25.9	17	4	23.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.854484501	2.277661109	2	1	0	1	0.145515499	0.722338891	2	2	1	1	0.854484501	0.277661109	1.255243622	1.255243622	1	2.126653869	2.126653869	1	NA	NA	0	NA	NA	0	4	NA	1	1	6.36E-11	1	0.00000141	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	153697275	C	A	-	-	-	-	-	-	57	0	0	32	4	12.5	33	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.499001996	0.499001996	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.0000201	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	153719294	C	G	-	-	-	-	-	-	45	0	0	40	19	47.5	36	5	13.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.846207585	1.423103792	2	1.497298246	1.497298246	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.27E-33	1	0.00000104	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	153825809	G	A	-	-	-	-	-	-	9	0	0	57	13	22.8	28	1	3.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.339473093	5	2	3	1	2	0.660526907	1	2	NA	2	NA	0.339473093	NA	1.215579506	1.215579506	1	0.423789474	0.423789474	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.44E-18	1	0.130947004	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	153954104	C	A	ENSG00000114790	CCDS46938.1	r.?	-	-	intronic	47	0	0	44	4	9.1	36	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.339473093	5	2	3	1	2	0.660526907	1	2	NA	2	NA	0.339473093	NA	0.485165505	0.485165505	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	0.0000723	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	153983666	G	A	-	-	-	-	-	-	49	0	0	50	15	30	32	7	21.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.339473093	5	2	3	1	2	0.660526907	1	2	NA	2	NA	0.339473093	NA	1.599446718	0.963216381	1.660526907	2.578052632	0.859350877	3	NA	NA	0	NA	NA	1	4	NA	1	1	5.83E-23	1	2.36E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	154038400	C	T	MPP1	CCDS14762.1	r.?	-	-	upstream	23	0	0	41	30	73.2	29	9	31	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.402297358	3.60351971	4	3	0	0	0.597702642	0.39648029	5	4	0	0	0.402297358	0.60351971	4.680637355	1.063226078	4.402297358	3.216389356	1.072129785	3	NA	NA	1	NA	NA	0	4	NA	1	1	2.79E-60	1	1.79E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	154072958	A	T	GPR149	CCDS43162.1	r.?	-	-	intronic	36	0	0	43	6	14	21	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.339473093	5	2	3	1	2	0.660526907	1	2	NA	2	NA	0.339473093	NA	0.746408469	0.746408469	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	8.13E-08	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	154078717	T	G	-	-	-	-	-	-	40	0	0	37	5	13.5	30	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.538922156	0.538922156	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.00000119	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	61426678	G	T	C20orf20	CCDS13503.1	r.?	-	-	upstream	24	0	0	53	12	22.6	21	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	7.617024881	5	4	3	3	2	0.382975119	1	5	NA	3	NA	0.617024881	NA	2.171643232	1.085821616	2	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	5.39E-17	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	154241510	G	A	CNOT8	CCDS4329.1	r.?	-	-	intronic	22	0	0	38	7	18.4	21	1	4.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.734530938	0.734530938	1	0.421052632	0.421052632	1	NA	NA	1	NA	NA	1	4	NA	1	1	8.61E-10	1	0.099912572	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	154366484	G	T	-	-	-	-	-	-	42	0	0	34	5	14.7	35	4	11.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.339473093	5	2	3	1	2	0.660526907	1	2	NA	2	NA	0.339473093	NA	0.783728892	0.783728892	1	1.342	1.342	1	NA	NA	0	NA	NA	1	4	NA	1	1	0.000000771	1	0.0000289	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	154485301	G	A	-	-	-	-	-	-	44	0	0	43	10	23.3	29	2	6.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.396139721	1.396139721	1	0.743263158	0.743263158	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.61E-14	1	0.009279585	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	154736724	G	T	TMLHE	CCDS14768.1	r.976c>a	c.830C>A	p.A277E	missense	42	0	0	68	47	69.1	29	14	48.3	96	0	0	381	235	61.7	299	87	29.1	1.24E-98	FALSE	FALSE	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1	NA	NA	1	NA	NA	1	NA	NA	1	NA	NA	1	1	1.20E-91	0	4.41E-25	2.31E-124	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	21	14375318	T	C	-	-	-	-	-	-	67	0	0	98	9	9.2	84	8	9.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5.21139392	6	4	5	1	1	0.78860608	1	4	NA	2	NA	0.21139392	NA	0.66271371	0.66271371	1	1.213333333	1.213333333	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.06E-09	1	1.21E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	154811465	T	G	KCNN3	CCDS30880.1	r.?	-	-	intronic	30	0	0	43	12	27.9	32	7	21.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.671772455	0.835886228	2	2.359052632	1.179526316	2	NA	NA	1	NA	NA	1	4	NA	1	1	3.24E-18	1	2.36E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	21	14898575	G	T	-	-	-	-	-	-	45	0	0	74	33	44.6	33	11	33.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5.21139392	5	4	3	1	2	0.78860608	1	4	NA	2	NA	0.21139392	NA	3.21272081	1.070906937	3	3.920052632	1.306684211	3	NA	NA	0	NA	NA	0	4	NA	1	1	1.09E-55	1	8.54E-18	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	154868963	G	A	GALNT13	CCDS2199.1	r.?	-	-	intronic	52	0	0	48	15	31.2	30	2	6.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.869508982	0.934754491	2	0.721719298	0.721719298	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.86E-23	1	0.009909649	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	155049507	A	C	EFNA3	CCDS1090.1	r.?	-	-	upstream	35	0	0	49	26	53.1	28	5	17.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	3.181760479	1.59088024	2	1.928175439	1.928175439	1	NA	NA	1	NA	NA	1	4	NA	1	1	7.78E-47	1	0.000000279	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	155058098	G	T	-	-	-	-	-	-	45	0	0	17	8	47.1	31	6	19.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.880239521	0.94011976	2	1.701754386	1.701754386	1	NA	NA	1	NA	NA	1	4	NA	1	1	9.12E-15	1	1.03E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	75500749	T	G	-	-	-	-	-	-	48	0	0	50	20	40	30	9	30	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.596806387	0.798403194	2	2.631578947	1.315789474	2	NA	NA	1	NA	NA	1	4	NA	1	1	3.90E-33	1	2.54E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	155126880	T	A	GALNT13	CCDS2199.1	r.?	-	-	intronic	38	0	0	46	4	8.7	44	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.521305389	0.521305389	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.0000862	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	155135709	T	C	-	-	-	-	-	-	47	0	0	17	6	35.3	17	6	35.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.854484501	2.277661109	2	1	0	1	0.145515499	0.722338891	2	2	1	1	0.854484501	0.277661109	1.710814666	1.710814666	1	3.194505599	2.500276151	1.277661109	NA	NA	0	NA	NA	0	4	NA	1	1	1.84E-10	1	1.84E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	155186472	A	G	GALNT13	CCDS2199.1	r.?	-	-	intronic	52	0	0	47	8	17	40	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.018642715	1.018642715	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	1.03E-10	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	21	20552480	T	C	-	-	-	-	-	-	32	0	0	78	9	11.5	47	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	7	5	5	3	2	2	1	1	NA	NA	NA	NA	NA	NA	1.034081836	1.034081836	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	2.61E-10	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	155404846	G	T	ENSG00000216895	ENST00000401694	r.?	-	-	intronic	39	0	0	36	19	52.8	14	3	21.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.107784431	1.053892216	2	1.877192982	1.877192982	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.51E-34	1	0.0000437	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	155465797	A	T	ASH1L	CCDS1113.2	r.?	-	-	intronic	44	0	0	44	12	27.3	40	2	5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.635820359	0.81791018	2	0.538596491	0.538596491	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.44E-18	1	0.017193422	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	155473003	A	T	-	-	-	-	-	-	50	0	0	29	14	48.3	28	6	21.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.928143713	0.964071856	2	1.877192982	1.877192982	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.41E-25	1	5.36E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	155535156	G	T	ASH1L	CCDS1113.2	r.?	-	-	upstream	44	0	0	51	14	27.5	46	8	17.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.647804391	0.823902196	2	1.874315789	1.874315789	1	NA	NA	1	NA	NA	1	4	NA	1	1	6.64E-21	1	8.61E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	155555230	G	A	SLC33A1	CCDS3173.1	r.?	-	-	intronic	36	0	0	45	8	17.8	35	2	5.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.339473093	5	2	3	1	2	0.660526907	1	2	NA	2	NA	0.339473093	NA	0.949005053	0.949005053	1	0.671	0.671	1	NA	NA	0	NA	NA	1	4	NA	1	1	7.14E-11	1	0.013332991	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	155643107	A	G	-	-	-	-	-	-	49	0	0	30	15	50	31	13	41.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.996007984	0.998003992	2	3.675438596	1.837719298	2	NA	NA	1	NA	NA	1	4	NA	1	1	4.41E-27	1	2.32E-22	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	155654545	T	C	YY1AP1	CCDS1116.1	r.?	-	-	intronic	48	0	0	39	12	30.8	26	1	3.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.845540918	0.922770459	2	0.409333333	0.409333333	1	NA	NA	1	NA	NA	1	4	NA	1	1	8.43E-19	1	0.122190858	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	155656048	G	A	YY1AP1	CCDS1116.1	r.?	-	-	intronic	7	0	0	33	13	39.4	25	3	12	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.360854291	1.180427146	2	1.292631579	1.292631579	1	NA	NA	1	NA	NA	1	4	NA	1	1	6.37E-22	1	0.00026475	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	155777477	A	G	KCNAB1	ENST00000472028	r.?	-	-	intronic	41	0	0	46	12	26.1	37	7	18.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.339473093	5	2	3	1	2	0.660526907	1	2	NA	2	NA	0.339473093	NA	1.391518645	1.391518645	1	2.224894737	1.112447368	2	NA	NA	0	NA	NA	1	4	NA	1	1	8.12E-18	1	7.05E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	155844580	G	A	KCNAB1	CCDS3174.1	r.?	-	-	intronic	50	0	0	38	10	26.3	36	7	19.4	0	0	NA	0	0	NA	1	0	0	1	TRUE	FALSE	3.339473093	5	2	3	1	2	0.660526907	1	2	NA	2	NA	0.339473093	NA	1.402181623	1.402181623	1	2.283754386	1.141877193	2	NA	NA	0	0	0	1	4	NA	1	1	4.06E-15	1	5.74E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	49245582	G	A	RASIP1	CCDS12731.1	r.?	-	-	upstream	28	0	0	41	9	22	30	1	3.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	8	4	5	2	3	1	1	NA	NA	NA	NA	NA	NA	1.758243513	1.758243513	1	0.487473684	0.487473684	1	NA	NA	0	NA	NA	1	4	NA	1	1	5.92E-13	1	0.139615808	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	155952287	T	G	-	-	-	-	-	-	45	0	0	61	6	9.8	28	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.587217565	0.587217565	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.000000685	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	155957458	A	G	-	-	-	-	-	-	32	0	0	30	14	46.7	31	3	9.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.864271457	0.932135729	2	0.850877193	0.850877193	1	NA	NA	1	NA	NA	1	4	NA	1	1	8.24E-25	1	0.000505952	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	156162491	G	C	SLC25A44	CCDS1133.1	r.?	-	-	upstream	29	0	0	56	15	26.8	48	6	12.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.605860279	0.80293014	2	1.346491228	1.346491228	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.09E-22	1	0.00000016	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	21	21377106	G	T	-	-	-	-	-	-	49	0	0	63	10	15.9	44	3	6.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.559012765	5	2	3	2	2	0.440987235	1	3	NA	2	NA	0.559012765	NA	1.041613569	1.041613569	1	0.800491228	0.800491228	1	NA	NA	0	NA	NA	1	4	NA	1	1	9.81E-13	1	0.00142027	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	156253911	G	A	-	-	-	-	-	-	40	0	0	38	8	21.1	28	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	2.854484501	2.277661109	2	1	0	1	0.145515499	0.722338891	2	2	1	1	0.854484501	0.277661109	1.022611599	1.022611599	1	0	NA	0	NA	NA	0	NA	NA	0	NA	NA	1	1	1.67E-11	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	21	21410238	G	T	-	-	-	-	-	-	41	0	0	57	5	8.8	34	3	8.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.559012765	5	2	3	2	2	0.440987235	1	3	NA	2	NA	0.559012765	NA	0.576490529	0.576490529	1	1.035929825	1.035929825	1	NA	NA	0	NA	NA	1	4	NA	1	1	0.0000105	1	0.000666058	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	156267581	G	T	SSR3	CCDS3176.1	r.?	-	-	intronic	57	0	0	37	10	27	36	20	55.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.339473093	5	2	3	1	2	0.660526907	1	2	NA	2	NA	0.339473093	NA	1.439502046	1.439502046	1	6.545192982	2.181730994	3	NA	NA	0	NA	NA	1	4	NA	1	1	3.01E-15	1	6.46E-37	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	156284285	G	C	-	-	-	-	-	-	44	0	0	26	18	69.2	33	11	33.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.76247505	1.381237525	2	2.921052632	1.460526316	2	NA	NA	1	NA	NA	1	4	NA	1	1	5.74E-36	1	8.54E-18	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	156389697	A	T	TIMD4	CCDS4332.1	r.?	-	-	intronic	49	0	0	51	6	11.8	31	1	3.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.707057884	0.707057884	1	0.344701754	0.344701754	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.000000232	1	0.143917729	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	51681519	G	A	-	-	-	-	-	-	42	0	0	43	18	41.9	23	2	8.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	8	4	5	2	3	1	1	NA	NA	NA	NA	NA	NA	3.348654691	1.11621823	3	1.285157895	1.285157895	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.06E-30	1	0.00589844	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	156473327	G	A	MEF2D	CCDS1143.1	r.?	-	-	upstream	35	0	0	40	12	30	48	9	18.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.79760479	0.898802395	2	2.025122807	1.012561404	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.20E-18	1	2.75E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	156589341	G	T	-	-	-	-	-	-	40	0	0	39	5	12.8	28	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.510978044	0.510978044	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.00000156	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	156601060	C	G	GUCY1A3	CCDS34085.1	r.?	-	-	intronic	45	0	0	40	13	32.5	29	4	13.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.854484501	2.277661109	2	1	0	1	0.145515499	0.722338891	2	2	1	1	0.854484501	0.277661109	1.575112652	0.787556326	2	1.248843549	1.248843549	1	NA	NA	0	NA	NA	0	4	NA	1	1	1.30E-20	1	0.0000134	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	156630070	T	G	LMBR1	CCDS5945.1	r.?	-	-	intronic	40	0	0	33	17	51.5	32	6	18.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.055888224	1.027944112	2	1.649122807	1.649122807	1	NA	NA	1	NA	NA	1	4	NA	1	1	8.25E-31	1	1.27E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	156844135	A	T	-	-	-	-	-	-	30	0	0	32	5	15.6	25	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.622754491	0.622754491	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.000000562	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	156864948	C	T	-	-	-	-	-	-	38	0	0	26	5	19.2	23	3	13	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.766467066	0.766467066	1	1.140350877	1.140350877	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.000000188	1	0.000205387	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	156894937	T	C	-	-	-	-	-	-	56	0	0	50	8	16	34	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	2.854484501	2.277661109	2	1	0	1	0.145515499	0.722338891	2	2	1	1	0.854484501	0.277661109	0.775440075	0.775440075	1	0	NA	0	NA	NA	0	NA	NA	0	NA	NA	1	1	1.74E-10	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	156938362	G	A	UBE3C	CCDS34789.1	r.?	-	-	intronic	59	0	0	30	6	20	19	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.798403194	0.798403194	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	8.37E-09	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	157036927	C	T	-	-	-	-	-	-	37	0	0	41	15	36.6	45	12	26.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.193077844	1.096538922	2	2.876105263	1.438052632	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.71E-24	1	6.03E-18	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	157084348	G	A	-	-	-	-	-	-	23	0	0	41	12	29.3	23	2	8.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.755660679	0.877830339	2	0.937157895	0.937157895	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.69E-18	1	0.00589844	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	157159489	A	G	-	-	-	-	-	-	17	0	0	38	18	47.4	23	5	21.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.840215569	1.420107784	2	2.337508772	1.168754386	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.16E-31	1	9.75E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	21	23341199	C	A	-	-	-	-	-	-	55	0	0	56	17	30.4	46	17	37	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.559012765	5	2	3	2	2	0.440987235	1	3	NA	2	NA	0.559012765	NA	1.991512735	0.995756367	2	4.355614035	1.451871345	3	NA	NA	0	NA	NA	1	4	NA	1	1	6.22E-26	1	1.16E-27	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	157282287	A	T	-	-	-	-	-	-	43	0	0	37	14	37.8	35	7	20	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.264982036	1.132491018	2	2.154385965	1.077192982	2	NA	NA	1	NA	NA	1	4	NA	1	1	3.35E-23	1	4.65E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	157494827	C	A	-	-	-	-	-	-	43	0	0	35	4	11.4	25	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.68308982	0.68308982	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.0000289	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	157677202	T	G	-	-	-	-	-	-	58	0	0	48	7	14.6	44	0	0	95	0	0	267	30	11.2	358	1	0.3	0.972622129	TRUE	TRUE	3.339473093	5	2	3	1	2	0.660526907	1	2	NA	2	NA	0.339473093	NA	0.778397403	0.778397403	1	0	0	1	0.597126775	0.597126775	1	0.035315789	0.035315789	1	3	2	1	1	4.81E-09	1.28E-30	1	0.833787797	YES	1_1	0_0	somatic	custom.pulldown.HiSeq
PD9852b	3	157723884	T	C	-	-	-	-	-	-	69	0	0	53	19	35.8	37	11	29.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.339473093	5	2	3	1	2	0.660526907	1	2	NA	2	NA	0.339473093	NA	1.908673084	0.954336542	2	3.496263158	1.165421053	3	NA	NA	0	NA	NA	1	4	NA	1	1	1.93E-30	1	3.70E-17	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	21	25894355	G	T	-	-	-	-	-	-	60	0	0	45	5	11.1	39	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.559012765	5	2	3	2	2	0.440987235	1	3	NA	2	NA	0.559012765	NA	0.727164189	0.727164189	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	0.00000323	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	157786364	T	G	-	-	-	-	-	-	51	0	0	49	13	26.5	30	6	20	0	0	NA	1	0	0	0	0	NA	1	TRUE	FALSE	3.339473093	5	2	3	1	2	0.660526907	1	2	NA	2	NA	0.339473093	NA	1.412844601	1.412844601	1	2.354385965	1.177192982	2	0	NA	0	NA	NA	1	4	NA	1	1	2.71E-19	1	8.37E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	157791959	G	C	-	-	-	-	-	-	36	0	0	47	18	38.3	27	5	18.5	0	0	NA	0	0	NA	1	0	0	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.294942116	1.147471058	2	1.992807018	1.992807018	1	NA	NA	1	0	0	1	4	NA	1	1	1.52E-29	1	0.00000023	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	21	26598446	C	T	-	-	-	-	-	-	54	0	0	56	8	14.3	49	2	4.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.559012765	5	2	3	2	2	0.440987235	1	3	NA	2	NA	0.559012765	NA	0.936797109	0.936797109	1	0.482649123	0.482649123	1	NA	NA	0	NA	NA	1	4	NA	1	1	4.48E-10	1	0.025168485	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	157876670	A	T	-	-	-	-	-	-	51	0	0	61	7	11.5	39	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.689081836	0.689081836	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	2.69E-08	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	157916720	T	G	-	-	-	-	-	-	51	0	0	34	13	38.2	36	8	22.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.2889501	1.14447505	2	2.391368421	1.195684211	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.03E-21	1	1.04E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	157942623	C	T	RSRC1	CCDS3181.1	r.?	-	-	intronic	60	0	0	50	9	18	45	2	4.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.339473093	5	2	3	1	2	0.660526907	1	2	NA	2	NA	0.339473093	NA	0.959668031	0.959668031	1	0.517964912	0.517964912	1	NA	NA	0	NA	NA	1	4	NA	1	1	4.07E-12	1	0.021467209	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	157999629	G	T	RSRC1	CCDS3181.1	r.?	-	-	intronic	61	0	0	36	14	38.9	43	9	20.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.339473093	5	2	3	1	2	0.660526907	1	2	NA	2	NA	0.339473093	NA	2.073949245	1.036974622	2	2.460333333	0.820111111	3	NA	NA	0	NA	NA	1	4	NA	1	1	2.09E-23	1	9.45E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	158048109	G	C	-	-	-	-	-	-	43	0	0	43	5	11.6	42	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.695073852	0.695073852	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.00000257	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	158085712	A	T	PTPRN2	CCDS5949.1	r.?	-	-	intronic	29	0	0	29	12	41.4	33	7	21.2	0	0	NA	2	0	0	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.652694611	0.826347305	2	1.859649123	1.859649123	1	0	0	1	NA	NA	1	4	NA	1	1	1.17E-20	1	2.98E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	158104348	G	T	-	-	-	-	-	-	30	0	0	45	14	31.1	28	4	14.3	0	0	NA	1	0	0	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.863516966	0.931758483	2	1.540385965	1.540385965	1	0	0	1	NA	NA	1	4	NA	1	1	8.81E-22	1	0.0000116	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	158139224	T	A	-	-	-	-	-	-	48	0	0	52	12	23.1	38	4	10.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.384155689	1.384155689	1	1.131052632	1.131052632	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.19E-17	1	0.0000403	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	158244027	C	A	EBF1	CCDS4343.1	r.?	-	-	intronic	38	0	0	41	8	19.5	37	6	16.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.168443114	1.168443114	1	1.745052632	1.745052632	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.22E-11	1	3.18E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	158252804	G	T	GRIA2	CCDS43275.1	r.?	-	-	intronic	57	0	0	40	22	55	27	8	29.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.854484501	2.277661109	2	1	0	1	0.145515499	0.722338891	2	2	1	1	0.854484501	0.277661109	2.665575258	1.332787629	2	2.678678916	2.096548841	1.277661109	NA	NA	0	NA	NA	0	4	NA	1	1	2.48E-40	1	7.97E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	158260890	G	C	GRIA2	CCDS43275.1	r.?	-	-	intronic	57	0	0	35	4	11.4	30	2	6.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.854484501	2.277661109	2	1	0	1	0.145515499	0.722338891	2	2	1	1	0.854484501	0.277661109	0.552501053	0.552501053	1	0.606322593	0.606322593	1	NA	NA	0	NA	NA	0	4	NA	1	1	0.0000289	1	0.009909649	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	21	28763754	G	A	-	-	-	-	-	-	44	0	0	51	14	27.5	35	7	20	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.559012765	5	2	3	2	2	0.440987235	1	3	NA	2	NA	0.559012765	NA	1.801532902	0.900766451	2	2.354385965	1.177192982	2	NA	NA	0	NA	NA	1	4	NA	1	1	6.64E-21	1	4.65E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	158301953	C	G	PTPRN2	CCDS5949.1	r.?	-	-	intronic	14	0	0	24	6	25	14	3	21.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.998003992	0.998003992	1	1.877192982	1.877192982	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.95E-09	1	0.0000437	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	158370954	C	A	-	-	-	-	-	-	39	0	0	42	11	26.2	31	1	3.2	0	0	NA	0	0	NA	2	0	0	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.569908184	1.569908184	1	0.344701754	0.344701754	1	NA	NA	1	0	0	1	4	NA	1	1	1.81E-16	1	0.143917729	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	158457294	T	G	SYNJ2	CCDS5254.1	r.?	-	-	intronic	46	0	0	21	10	47.6	21	9	42.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.900199601	0.9500998	2	3.763157895	1.881578947	2	NA	NA	1	NA	NA	1	4	NA	1	1	3.28E-18	1	5.44E-16	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	21	30019257	A	G	-	-	-	-	-	-	46	0	0	71	25	35.2	53	13	24.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.559012765	5	2	3	2	2	0.440987235	1	3	NA	2	NA	0.559012765	NA	2.305962114	0.901113955	2.559012765	2.884122807	0.961374269	3	NA	NA	0	NA	NA	1	4	NA	1	1	2.38E-39	1	8.53E-19	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	158503703	C	T	-	-	-	-	-	-	15	0	0	27	4	14.8	16	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.590818363	0.590818363	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.00001	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	158616237	G	C	GTF2H5	CCDS5256.1	r.?	-	-	downstream	45	0	0	32	17	53.1	33	7	21.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.119760479	1.05988024	2	1.859649123	1.859649123	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.02E-31	1	2.98E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	158812509	T	C	-	-	-	-	-	-	55	0	0	35	18	51.4	30	3	10	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.051896208	1.025948104	2	0.877192982	0.877192982	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.60E-32	1	0.000458697	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	158854077	C	T	IQCJ	CCDS46947.1	r.?	-	-	intronic	37	0	0	46	9	19.6	40	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.339473093	5	2	3	1	2	0.660526907	1	2	NA	2	NA	0.339473093	NA	1.044971856	1.044971856	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	1.82E-12	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	158884327	T	A	-	-	-	-	-	-	52	0	0	41	13	31.7	43	10	23.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.899469062	0.949734531	2	2.509859649	1.254929825	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.89E-20	1	1.61E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	159081549	G	A	-	-	-	-	-	-	46	0	0	53	18	34	29	4	13.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.037285429	1.018642715	2	1.486526316	1.486526316	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.09E-28	1	0.0000134	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	159101953	C	T	AIM2	ENST00000411768	r.?	-	-	intronic	27	0	0	39	7	17.9	20	1	5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.072570858	1.072570858	1	0.538596491	0.538596491	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.04E-09	1	0.09538952	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	159129493	C	T	-	-	-	-	-	-	55	0	0	50	18	36	38	5	13.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.157125749	1.078562874	2	1.421894737	1.421894737	1	NA	NA	1	NA	NA	1	4	NA	1	1	5.92E-29	1	0.00000137	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	159246807	T	C	-	-	-	-	-	-	34	0	0	46	17	37	32	4	12.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.477045908	0.738522954	2	1.096491228	1.096491228	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.16E-27	1	0.0000201	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	159310570	G	A	-	-	-	-	-	-	40	0	0	50	15	30	38	5	13.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.79760479	0.898802395	2	1.421894737	1.421894737	1	NA	NA	1	NA	NA	1	4	NA	1	1	5.83E-23	1	0.00000137	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	159325345	A	C	SCHIP1	CCDS3186.1	r.?	-	-	intronic	42	0	0	42	13	31	37	10	27	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.339473093	5	2	3	1	2	0.660526907	1	2	NA	2	NA	0.339473093	NA	1.652761609	0.995323594	1.660526907	3.178421053	1.059473684	3	NA	NA	0	NA	NA	1	4	NA	1	1	2.72E-20	1	3.01E-15	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	159586052	G	A	SCHIP1	CCDS3186.1	r.?	-	-	intronic	44	0	0	41	9	22	33	1	3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.339473093	5	2	3	1	2	0.660526907	1	2	NA	2	NA	0.339473093	NA	1.172927593	1.172927593	1	0.353157895	0.353157895	1	NA	NA	0	NA	NA	1	4	NA	1	1	5.92E-13	1	0.15245715	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	159602362	G	A	ETFDH	ENST00000511912	r.?	-	-	intronic	47	0	0	34	8	23.5	28	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	2.854484501	2.277661109	2	1	0	1	0.145515499	0.722338891	2	2	1	1	0.854484501	0.277661109	1.13892761	1.13892761	1	0	NA	0	NA	NA	0	NA	NA	0	NA	NA	1	1	6.32E-12	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	159653338	A	G	-	-	-	-	-	-	37	0	0	38	10	26.3	38	4	10.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.339473093	5	2	3	1	2	0.660526907	1	2	NA	2	NA	0.339473093	NA	1.402181623	1.402181623	1	1.236052632	1.236052632	1	NA	NA	0	NA	NA	1	4	NA	1	1	4.06E-15	1	0.0000403	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	159801238	C	T	-	-	-	-	-	-	54	0	0	37	12	32.4	27	5	18.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.941413174	0.970706587	2	1.992807018	1.992807018	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.03E-19	1	0.00000023	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	160086012	C	T	TANC1	CCDS42766.1	r.?	-	-	intronic	47	0	0	59	10	16.9	48	4	8.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.012650699	1.012650699	1	0.894070175	0.894070175	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.91E-13	1	0.000102016	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	160168773	G	A	TRIM59	CCDS3190.1	r.?	-	-	upstream	25	0	0	43	18	41.9	25	5	20	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.339473093	5	2	3	1	2	0.660526907	1	2	NA	2	NA	0.339473093	NA	2.233893917	1.116946958	2	2.354385965	1.177192982	2	NA	NA	0	NA	NA	1	4	NA	1	1	2.06E-30	1	0.000000153	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	160418307	A	T	-	-	-	-	-	-	59	0	0	58	26	44.8	33	5	15.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.339473093	5	2	3	1	2	0.660526907	1	2	NA	2	NA	0.339473093	NA	2.388507099	1.19425355	2	1.789333333	1.789333333	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.83E-44	1	0.00000066	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	160552658	C	T	-	-	-	-	-	-	58	0	0	47	18	38.3	24	4	16.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.294942116	1.147471058	2	1.798912281	1.798912281	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.52E-29	1	0.00000613	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	160630185	T	C	-	-	-	-	-	-	61	0	0	55	6	10.9	43	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.653129741	0.653129741	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.000000367	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	160677388	C	T	PPM1L	CCDS33886.1	r.?	-	-	intronic	40	0	0	39	21	53.8	34	2	5.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.339473093	5	2	3	1	2	0.660526907	1	2	NA	2	NA	0.339473093	NA	2.868341115	1.434170557	2	0.69454386	0.69454386	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.73E-38	1	0.012612579	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	160770031	A	G	GABRB2	CCDS4355.1	r.?	-	-	intronic	59	0	0	43	21	48.8	32	4	12.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.924103792	1.462051896	2	1.346491228	1.346491228	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.52E-37	1	0.0000201	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	160832527	C	A	PLA2R1	CCDS33309.1	r.?	-	-	intronic	53	0	0	47	14	29.8	30	5	16.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.785620758	0.892810379	2	1.798912281	1.798912281	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.79E-21	1	0.000000401	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	160851807	T	A	SLC22A3	CCDS5277.1	r.?	-	-	intronic	50	0	0	35	12	34.3	27	2	7.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.369261477	1.369261477	1	0.649122807	0.649122807	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.83E-19	1	0.00807567	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	161142970	A	G	-	-	-	-	-	-	63	0	0	57	16	28.1	31	7	22.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.683756487	0.841878244	2	2.43445614	1.21722807	2	NA	NA	1	NA	NA	1	4	NA	1	1	7.28E-24	1	1.85E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	161161337	C	T	-	-	-	-	-	-	52	1	1.9	44	11	25	25	5	20	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.854484501	2.277661109	2	1	0	1	0.145515499	0.722338891	2	2	1	1	0.854484501	0.277661109	1.211625117	1.211625117	1	1.809918187	1.809918187	1	NA	NA	0	NA	NA	0	4	NA	0.229451111	1	3.22E-16	1	0.000000153	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	161361109	C	A	-	-	-	-	-	-	48	0	0	43	15	34.9	37	7	18.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.091213573	1.045606786	2	2.035894737	1.017947368	2	NA	NA	1	NA	NA	1	4	NA	1	1	4.05E-24	1	7.05E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	161410176	A	C	MAP3K4	CCDS34565.1	r.?	-	-	upstream	44	0	0	44	17	38.6	30	8	26.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.540918164	0.770459082	2	2.342105263	1.171052632	2	NA	NA	1	NA	NA	1	4	NA	1	1	4.61E-28	1	2.07E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	161430240	C	T	-	-	-	-	-	-	10	0	0	20	4	20	16	1	6.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.208457784	4	2	2	2	2	0.791542216	1	3	NA	2	NA	0.208457784	NA	1.24009475	1.24009475	1	0.667859649	0.667859649	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.00000284	1	0.077068876	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	161477830	C	T	-	-	-	-	-	-	40	0	0	39	18	46.2	36	9	25	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.339473093	5	2	3	1	2	0.660526907	1	2	NA	2	NA	0.339473093	NA	2.463147946	1.231573973	2	2.942982456	0.980994152	3	NA	NA	0	NA	NA	1	4	NA	1	1	2.15E-31	1	1.63E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	161571365	G	C	-	-	-	-	-	-	61	0	0	46	16	34.8	34	7	20.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.339473093	5	2	3	1	2	0.660526907	1	2	NA	2	NA	0.339473093	NA	1.855358193	0.927679097	2	2.425017544	0.808339181	3	NA	NA	0	NA	NA	1	4	NA	1	1	1.31E-25	1	3.73E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	161747478	T	A	ATF6	CCDS1235.1	r.?	-	-	intronic	61	0	0	60	22	36.7	38	7	18.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.208457784	4	2	2	2	2	0.791542216	1	3	NA	2	NA	0.208457784	NA	2.275573867	1.030390476	2.208457784	1.982035088	0.991017544	2	NA	NA	1	NA	NA	1	4	NA	1	1	2.81E-35	1	8.61E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	161748106	T	C	-	-	-	-	-	-	44	1	2.3	47	14	29.8	33	8	24.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.785620758	0.892810379	2	2.606807018	1.303403509	2	NA	NA	1	NA	NA	1	4	NA	0.197923942	1	1.79E-21	1	4.85E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	161823385	A	G	-	-	-	-	-	-	47	0	0	46	18	39.1	41	8	19.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.342878244	1.171439122	2	2.100526316	1.050263158	2	NA	NA	1	NA	NA	1	4	NA	1	1	9.41E-30	1	3.22E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	161921417	T	A	PARK2	CCDS5281.1	r.?	-	-	intronic	39	0	0	25	12	48	36	13	36.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.916167665	0.958083832	2	3.166666667	1.583333333	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.20E-21	1	2.53E-21	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	161986980	C	G	OLFML2B	CCDS1236.1	r.?	-	-	intronic	60	0	0	48	26	54.2	33	4	12.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.208457784	4	2	2	2	2	0.791542216	1	3	NA	2	NA	0.208457784	NA	3.360656774	1.521721084	2.208457784	1.303403509	1.303403509	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.67E-47	1	0.0000228	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	21	31391801	G	A	-	-	-	-	-	-	58	0	0	39	8	20.5	45	7	15.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.559012765	5	2	3	2	2	0.440987235	1	3	NA	2	NA	0.559012765	NA	1.34296089	1.34296089	1	1.836421053	1.836421053	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.09E-11	1	0.000000003	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	162024511	C	G	PARK2	CCDS5281.1	r.?	-	-	intronic	59	0	0	47	24	51.1	25	9	36	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.03992016	1.01996008	2	3.157894737	1.578947368	2	NA	NA	1	NA	NA	1	4	NA	1	1	8.60E-43	1	3.71E-15	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	162031650	C	G	-	-	-	-	-	-	37	0	0	38	12	31.6	32	5	15.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.339473093	5	2	3	1	2	0.660526907	1	2	NA	2	NA	0.339473093	NA	1.684750543	1.014587922	1.660526907	1.836421053	1.836421053	1	NA	NA	0	NA	NA	1	4	NA	1	1	5.86E-19	1	0.000000562	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	162043469	A	T	-	-	-	-	-	-	40	0	0	37	16	43.2	47	6	12.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.588550898	1.294275449	2	1.378807018	1.378807018	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.78E-27	1	0.000000141	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	162059535	C	T	TANK	CCDS2215.1	r.?	-	-	intronic	78	0	0	37	12	32.4	41	9	22	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.941413174	0.970706587	2	2.369824561	1.184912281	2	NA	NA	1	NA	NA	1	4	NA	1	1	4.03E-19	1	5.92E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	162069056	C	A	NOS1AP	CCDS1237.1	r.?	-	-	intronic	17	0	0	61	5	8.2	36	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	6	4	4	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.655345309	0.655345309	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	0.0000147	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	162083271	C	G	PARK2	CCDS5281.1	r.?	-	-	intronic	26	0	0	24	9	37.5	28	6	21.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.497005988	1.497005988	1	1.877192982	1.877192982	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.39E-15	1	5.36E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	21	33151274	A	T	-	-	-	-	-	-	36	0	0	49	5	10.2	32	0	0	286	0	0	198	30	15.2	258	0	0	1	TRUE	TRUE	4.559012765	5	2	3	2	2	0.440987235	1	3	NA	2	NA	0.559012765	NA	0.668204931	0.668204931	1	0	0	1	0.995756367	0.995756367	1	0	0	1	3	2	1	1	0.00000496	1.22E-34	1	1	YES	1_1	0_0	somatic	custom.pulldown.HiSeq
PD9852b	5	162090741	G	A	-	-	-	-	-	-	60	0	0	59	21	35.6	35	5	14.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.133157685	1.066578842	2	1.540385965	1.540385965	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.06E-33	1	0.000000895	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	162144703	T	C	NOS1AP	CCDS1237.1	r.?	-	-	intronic	50	0	0	79	13	16.5	34	5	14.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	4	4	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.318682635	1.318682635	1	1.583473684	1.583473684	1	NA	NA	1	NA	NA	0	4	NA	1	1	2.37E-16	1	0.000000771	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	162213814	A	G	PSMD14	CCDS46437.1	r.?	-	-	intronic	55	0	0	42	8	19	36	1	2.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.138483034	1.138483034	1	0.301614035	0.301614035	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.96E-11	1	0.165106833	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	162255884	A	G	-	-	-	-	-	-	55	0	0	41	5	12.2	30	3	10	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.854484501	2.277661109	2	1	0	1	0.145515499	0.722338891	2	2	1	1	0.854484501	0.277661109	0.591273057	0.591273057	1	0.904959093	0.904959093	1	NA	NA	0	NA	NA	0	4	NA	1	1	0.00000202	1	0.000458697	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	162260494	G	A	PSMD14	CCDS46437.1	r.?	-	-	intronic	52	0	0	44	14	31.8	47	12	25.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.905461078	0.952730539	2	2.746842105	1.373421053	2	NA	NA	1	NA	NA	1	4	NA	1	1	6.10E-22	1	1.09E-17	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	162270169	A	T	-	-	-	-	-	-	44	0	0	46	15	32.6	34	9	26.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.953397206	0.976698603	2	2.854561404	1.427280702	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.35E-23	1	9.15E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	162289978	C	T	-	-	-	-	-	-	48	0	0	47	12	25.5	29	1	3.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.339473093	5	2	3	1	2	0.660526907	1	2	NA	2	NA	0.339473093	NA	1.359529711	1.359529711	1	0.400245614	0.400245614	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.09E-17	1	0.135292269	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	162352004	T	A	FSTL5	CCDS3802.1	r.?	-	-	intronic	41	0	0	41	6	14.6	39	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	2.854484501	2.277661109	2	1	0	1	0.145515499	0.722338891	2	2	1	1	0.854484501	0.277661109	0.707589069	0.707589069	1	0	NA	0	NA	NA	0	NA	NA	0	NA	NA	1	1	6.05E-08	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	162393361	G	T	-	-	-	-	-	-	42	0	0	74	13	17.6	44	4	9.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	4	4	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.40659481	1.40659481	1	0.980245614	0.980245614	1	NA	NA	1	NA	NA	0	4	NA	1	1	9.62E-17	1	0.0000723	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	162566806	A	C	SLC4A10	CCDS46438.1	r.?	-	-	intronic	62	0	0	52	5	9.6	37	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.575233533	0.575233533	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.00000668	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	162592213	G	A	-	-	-	-	-	-	43	0	0	48	12	25	22	2	9.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.498003992	1.498003992	1	0.980245614	0.980245614	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.44E-17	1	0.005403392	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	162612924	G	C	-	-	-	-	-	-	50	0	0	60	28	46.7	33	6	18.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.798271457	1.399135729	2	1.960491228	1.960491228	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.31E-48	1	1.54E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	21	35758291	T	C	FAM165B	CCDS33550.1	r.?	-	-	intronic	45	0	0	53	5	9.4	49	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.559012765	5	2	3	2	2	0.440987235	1	3	NA	2	NA	0.559012765	NA	0.615796701	0.615796701	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	0.00000734	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	162646976	T	C	SLC4A10	CCDS46438.1	r.?	-	-	intronic	56	0	0	49	14	28.6	39	3	7.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.713716567	0.856858283	2	0.829438596	0.829438596	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.50E-21	1	0.000998458	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	21	40579216	C	T	BRWD1	CCDS13663.1	r.?	-	-	intronic	29	0	0	25	15	60	18	6	33.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.319395774	5	3	4	0	1	0.680604226	1	3	NA	1	NA	0.319395774	NA	3.186847045	1.062282348	3	3.920052632	0.980013158	4	NA	NA	0	NA	NA	1	4	NA	1	1	9.52E-29	1	2.75E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	162688383	T	A	-	-	-	-	-	-	47	0	0	44	15	34.1	38	5	13.2	93	1	1.1	273	135	49.5	253	36	14.2	7.68E-30	TRUE	TRUE	3.339473093	5	2	3	1	2	0.660526907	1	2	NA	2	NA	0.339473093	NA	1.81803777	0.909018885	2	1.553894737	1.553894737	1	2.639087085	1.319543543	2	1.671614035	0.835807018	2	4	3	1	0.372597118	6.12E-24	8.32E-231	0.00000137	3.23E-40	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	20	1013412	A	T	-	-	-	-	-	-	36	0	0	38	4	10.5	26	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	4.362325493	2	2	1	2	1	0.637674507	NA	3	NA	2	NA	0.362325493	0.524161677	0.524161677	1	0	0	1	NA	NA	0	NA	NA	0	3	NA	1	1	0.0000403	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	162835021	C	T	PARK2	CCDS5281.1	r.?	-	-	intronic	34	0	0	40	15	37.5	27	8	29.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.497005988	1.497005988	1	2.596491228	1.298245614	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.09E-24	1	7.97E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	162982653	C	T	PARK2	CCDS5281.1	r.?	-	-	intronic	45	0	0	33	8	24.2	34	5	14.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.966067864	0.966067864	1	1.289473684	1.289473684	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.85E-12	1	0.000000771	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	163052940	T	C	PARK2	CCDS5281.1	r.?	-	-	intronic	49	0	0	38	5	13.2	29	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.526946108	0.526946108	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.00000137	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	163085910	T	C	-	-	-	-	-	-	63	0	0	55	25	45.5	31	6	19.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.339473093	5	2	3	1	2	0.660526907	1	2	NA	2	NA	0.339473093	NA	2.425827523	1.212913761	2	2.283754386	1.141877193	2	NA	NA	0	NA	NA	1	4	NA	1	1	7.96E-43	1	1.03E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	163144258	C	T	-	-	-	-	-	-	16	0	0	50	12	24	23	1	4.3	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	2.854484501	2.277661109	2	1	0	1	0.145515499	0.722338891	2	2	1	1	0.854484501	0.277661109	1.163160113	1.163160113	1	0.38913241	NA	0	NA	NA	0	NA	NA	0	NA	NA	1	1	2.49E-17	1	0.108890944	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	163169019	G	A	PACRG	CCDS43524.1	r.?	-	-	intronic	53	0	0	29	8	27.6	31	3	9.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.101796407	1.101796407	1	0.850877193	0.850877193	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.53E-12	1	0.000505952	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	163332210	T	A	-	-	-	-	-	-	65	0	0	48	5	10.4	36	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.339473093	5	2	3	1	2	0.660526907	1	2	NA	2	NA	0.339473093	NA	0.554474862	0.554474862	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	0.00000447	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	163366650	T	A	KCNH7	CCDS2219.1	r.?	-	-	intronic	67	0	0	65	10	15.4	42	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.922770459	0.922770459	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	1.36E-12	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	163385772	G	A	-	-	-	-	-	-	41	0	0	33	6	18.2	36	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	2.854484501	2.277661109	2	1	0	1	0.145515499	0.722338891	2	2	1	1	0.854484501	0.277661109	0.882063085	0.882063085	1	0	NA	0	NA	NA	0	NA	NA	0	NA	NA	1	1	1.54E-08	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	163403155	G	A	KCNH7	CCDS2219.1	r.?	-	-	intronic	42	0	0	44	11	25	28	1	3.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.498003992	1.498003992	1	0.387789474	0.387789474	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.22E-16	1	0.130947004	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	163467816	G	T	-	-	-	-	-	-	44	0	0	62	9	14.5	26	3	11.5	0	0	NA	1	0	0	0	0	NA	1	TRUE	FALSE	3.339473093	5	2	3	1	2	0.660526907	1	2	NA	2	NA	0.339473093	NA	0.773065914	0.773065914	1	1.35377193	1.35377193	1	0	NA	0	NA	NA	1	4	NA	1	1	3.12E-11	1	0.000298167	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	163496809	G	A	-	-	-	-	-	-	44	0	0	54	7	13	33	1	3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.778962076	0.778962076	1	0.323157895	0.323157895	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.13E-08	1	0.15245715	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	163536814	T	G	-	-	-	-	-	-	55	0	0	60	5	8.3	41	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.497337325	0.497337325	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.0000136	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	163547071	C	A	PACRG	CCDS43524.1	r.?	-	-	intronic	53	0	0	38	4	10.5	30	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.419161677	0.419161677	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.0000403	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	163651822	C	G	-	-	-	-	-	-	53	0	0	44	6	13.6	40	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.814914172	0.814914172	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	9.37E-08	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	163658326	T	G	-	-	-	-	-	-	43	0	0	46	4	8.7	27	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.339473093	5	2	3	1	2	0.660526907	1	2	NA	2	NA	0.339473093	NA	0.463839548	0.463839548	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	0.0000862	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	163686786	G	A	-	-	-	-	-	-	34	0	0	33	6	18.2	35	4	11.4	0	0	NA	5	3	60	0	0	NA	1	TRUE	FALSE	3.339473093	5	2	3	1	2	0.660526907	1	2	NA	2	NA	0.339473093	NA	0.970331009	0.970331009	1	1.342	1.342	1	3.198893437	1.599446718	2	NA	NA	1	4	NA	1	1	1.54E-08	0.00000124	0.0000289	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	163767769	G	T	-	-	-	-	-	-	56	0	0	47	8	17	37	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.018642715	1.018642715	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	1.03E-10	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	21	43659129	T	C	ABCG1	CCDS42937.1	r.?	-	-	intronic	67	0	0	24	14	58.3	48	11	22.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.319395774	5	3	4	0	1	0.680604226	1	3	NA	1	NA	0.319395774	NA	3.096553045	1.032184348	3	2.69577193	0.898590643	3	NA	NA	0	NA	NA	1	4	NA	1	1	1.14E-26	1	9.31E-16	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	163790079	A	C	-	-	-	-	-	-	52	0	0	49	12	24.5	39	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.468043912	1.468043912	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	1.90E-17	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	163894077	C	G	AC008446.1	ENST00000486913	r.?	-	-	intronic	39	0	0	52	7	13.5	23	1	4.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.808922156	0.808922156	1	0.463192982	0.463192982	1	NA	NA	1	NA	NA	1	4	NA	1	1	8.58E-09	1	0.108890944	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	163911987	C	T	-	-	-	-	-	-	50	0	0	40	12	30	32	4	12.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.854484501	2.277661109	2	1	0	1	0.145515499	0.722338891	2	2	1	1	0.854484501	0.277661109	1.453950141	1.453950141	1	1.131198867	1.131198867	1	NA	NA	0	NA	NA	0	4	NA	1	1	1.20E-18	1	0.0000201	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	163913290	T	A	-	-	-	-	-	-	56	0	0	39	16	41	41	8	19.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.339473093	5	2	3	1	2	0.660526907	1	2	NA	2	NA	0.339473093	NA	2.185910515	1.092955258	2	2.295526316	1.147763158	2	NA	NA	0	NA	NA	1	4	NA	1	1	5.16E-27	1	3.22E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	164038488	T	G	-	-	-	-	-	-	52	0	0	41	20	48.8	44	12	27.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.924103792	1.462051896	2	2.940736842	1.470368421	2	NA	NA	1	NA	NA	1	4	NA	1	1	2.32E-35	1	4.44E-18	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	13916116	G	A	SEL1L2	CCDS42852.1	r.?	-	-	intronic	51	0	0	43	10	23.3	35	0	0	0	0	NA	2	0	0	0	0	NA	1	TRUE	FALSE	3	4.362325493	2	2	1	2	1	0.637674507	NA	3	NA	2	NA	0.362325493	1.163139721	1.163139721	1	0	0	1	0	NA	0	NA	NA	0	3	NA	1	1	1.61E-14	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	21	46261897	C	A	-	-	-	-	-	-	24	0	0	31	15	48.4	34	10	29.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.319395774	5	3	4	0	1	0.680604226	1	3	NA	1	NA	0.319395774	NA	2.570723283	0.95900889	2.680604226	3.460947368	0.865236842	4	NA	NA	0	NA	NA	1	4	NA	1	1	8.51E-27	1	1.15E-15	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	164308639	G	T	-	-	-	-	-	-	27	0	0	40	15	37.5	19	2	10.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.854484501	2.277661109	2	1	0	1	0.145515499	0.722338891	2	2	1	1	0.854484501	0.277661109	1.817437676	0.908718838	2	0.950207048	0.950207048	1	NA	NA	0	NA	NA	0	4	NA	1	1	1.09E-24	1	0.004039874	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	164366558	G	A	-	-	-	-	-	-	45	0	0	44	7	15.9	23	1	4.3	2	0	0	0	0	NA	0	0	NA	1	TRUE	FALSE	3.339473093	5	2	3	1	2	0.660526907	1	2	NA	2	NA	0.339473093	NA	0.847706761	0.847706761	1	0.506192982	0.506192982	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.55E-09	1	0.108890944	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	164490028	G	T	-	-	-	-	-	-	50	0	0	58	24	41.4	35	4	11.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.339473093	5	2	3	1	2	0.660526907	1	2	NA	2	NA	0.339473093	NA	2.207236471	1.103618236	2	1.342	1.342	1	NA	NA	0	NA	NA	1	4	NA	1	1	6.49E-40	1	0.0000289	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	164499377	C	G	Mar-01	CCDS3806.1	r.?	-	-	intronic	47	0	0	31	5	16.1	25	0	0	64	0	0	422	19	4.5	315	0	0	1	FALSE	FALSE	2.854484501	2.277661109	2	1	0	1	0.145515499	0.722338891	2	2	1	1	0.854484501	0.277661109	0.780286576	0.780286576	1	0	NA	0	0.218092521	0.218092521	1	0	NA	0	NA	NA	1	1	0.000000476	1.17E-12	1	1	YES	1_1	0_0	somatic	custom.pulldown.HiSeq
PD9852b	5	164530130	C	G	-	-	-	-	-	-	54	0	0	51	11	21.6	28	3	10.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.294275449	1.294275449	1	1.152596491	1.152596491	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.94E-15	1	0.000372895	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	164543960	C	T	-	-	-	-	-	-	45	0	0	46	12	26.1	31	4	12.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.339473093	5	2	3	1	2	0.660526907	1	2	NA	2	NA	0.339473093	NA	1.391518645	1.391518645	1	1.518578947	1.518578947	1	NA	NA	0	NA	NA	1	4	NA	1	1	8.12E-18	1	0.0000177	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	164561625	A	G	Mar-01	CCDS45732.1	r.?	-	-	intronic	53	0	0	36	8	22.2	29	3	10.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.854484501	2.277661109	2	1	0	1	0.145515499	0.722338891	2	2	1	1	0.854484501	0.277661109	1.075923104	1.075923104	1	0.932107866	0.932107866	1	NA	NA	0	NA	NA	0	4	NA	1	1	1.04E-11	1	0.000414371	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	164616574	C	A	PBX1	CCDS1246.1	r.?	-	-	intronic	40	0	0	48	8	16.7	29	5	17.2	2	0	0	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.000666667	1.000666667	1	1.85277193	1.85277193	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.23E-10	1	0.000000336	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	164645843	C	A	-	-	-	-	-	-	45	0	0	49	5	10.2	34	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.611185629	0.611185629	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.00000496	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	164665345	G	T	-	-	-	-	-	-	40	0	0	47	5	10.6	33	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.635153693	0.635153693	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.00000402	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	164686780	T	C	-	-	-	-	-	-	48	0	0	61	10	16.4	44	1	2.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.982690619	0.982690619	1	0.247754386	0.247754386	1	NA	NA	1	NA	NA	1	4	NA	1	1	6.98E-13	1	0.197923942	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	164691304	A	C	-	-	-	-	-	-	60	0	0	41	12	29.3	43	12	27.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.339473093	5	2	3	1	2	0.660526907	1	2	NA	2	NA	0.339473093	NA	1.562126295	1.562126295	1	3.284368421	1.094789474	3	NA	NA	0	NA	NA	1	4	NA	1	1	1.69E-18	1	3.24E-18	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	165079957	G	T	-	-	-	-	-	-	52	0	0	42	15	35.7	37	7	18.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.139149701	1.06957485	2	2.035894737	1.017947368	2	NA	NA	1	NA	NA	1	4	NA	1	1	2.65E-24	1	7.05E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	165089782	C	A	-	-	-	-	-	-	53	0	0	61	8	13.1	38	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.784954092	0.784954092	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	9.09E-10	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	165124892	A	T	Mar-01	CCDS45732.1	r.?	-	-	intronic	36	0	0	40	6	15	27	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	2.854484501	2.277661109	2	1	0	1	0.145515499	0.722338891	2	2	1	1	0.854484501	0.277661109	0.72697507	0.72697507	1	0	NA	0	NA	NA	0	NA	NA	0	NA	NA	1	1	5.18E-08	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	165266982	A	T	-	-	-	-	-	-	43	0	0	30	8	26.7	30	6	20	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.339473093	5	2	3	1	2	0.660526907	1	2	NA	2	NA	0.339473093	NA	1.423507579	1.423507579	1	2.354385965	1.177192982	2	NA	NA	0	NA	NA	1	4	NA	1	1	2.07E-12	1	8.37E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	165288978	C	A	-	-	-	-	-	-	36	0	0	46	13	28.3	28	3	10.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.695740519	0.847870259	2	1.152596491	1.152596491	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.07E-19	1	0.000372895	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	165509189	G	T	BCHE	CCDS3198.1	r.?	-	-	intronic	35	0	0	41	10	24.4	33	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.339473093	5	2	3	1	2	0.660526907	1	2	NA	2	NA	0.339473093	NA	1.300883331	1.300883331	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	9.51E-15	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	165556602	G	A	-	-	-	-	-	-	46	0	0	45	12	26.7	38	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.599868263	1.599868263	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	6.03E-18	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	165710997	C	A	-	-	-	-	-	-	51	0	0	45	5	11.1	33	3	9.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.665113772	0.665113772	1	0.980245614	0.980245614	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.00000323	1	0.000609557	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	165741666	G	C	-	-	-	-	-	-	46	0	0	49	11	22.4	29	6	20.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.854484501	2.277661109	2	1	0	1	0.145515499	0.722338891	2	2	1	1	0.854484501	0.277661109	1.085616105	1.085616105	1	1.873265323	1.873265323	1	NA	NA	0	NA	NA	0	4	NA	1	1	1.19E-15	1	6.72E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	14050758	A	C	MACROD2	CCDS13120.2	r.?	-	-	intronic	68	0	0	44	4	9.1	29	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	4.362325493	2	2	1	2	1	0.637674507	NA	3	NA	2	NA	0.362325493	0.454273453	0.454273453	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	0.0000723	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	165772178	C	A	-	-	-	-	-	-	18	0	0	22	12	54.5	18	4	22.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.854484501	2.277661109	2	1	0	1	0.145515499	0.722338891	2	2	1	1	0.854484501	0.277661109	2.641342756	1.320671378	2	2.009009187	2.009009187	1	NA	NA	0	NA	NA	0	4	NA	1	1	1.51E-22	1	0.00000181	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	165785385	A	G	SLC38A11	CCDS2224.1	r.?	-	-	intronic	41	0	0	34	6	17.6	32	4	12.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.05459481	1.05459481	1	1.346491228	1.346491228	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.86E-08	1	0.0000201	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	165816441	C	T	-	-	-	-	-	-	56	0	0	47	12	25.5	46	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.527964072	1.527964072	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	1.09E-17	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	165914966	G	A	-	-	-	-	-	-	37	0	0	53	7	13.2	29	1	3.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.790946108	0.790946108	1	0.366245614	0.366245614	1	NA	NA	1	NA	NA	1	4	NA	1	1	9.85E-09	1	0.135292269	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	165948351	G	A	-	-	-	-	-	-	52	0	0	52	16	30.8	48	7	14.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.845540918	0.922770459	2	1.572701754	1.572701754	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.33E-24	1	4.81E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	165993829	C	T	SCN3A	CCDS33312.1	r.?	-	-	intronic	51	0	0	49	9	18.4	41	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.102530938	1.102530938	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	3.35E-12	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	166101159	G	T	-	-	-	-	-	-	45	0	0	39	7	17.9	25	7	28	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.072570858	1.072570858	1	3.016140351	1.508070175	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.04E-09	1	3.47E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	166300866	C	G	CPE	CCDS3810.1	r.?	-	-	intronic	24	0	0	22	8	36.4	6	0	0	1	0	0	0	0	NA	0	0	NA	1	FALSE	FALSE	2.854484501	2.277661109	2	1	0	1	0.145515499	0.722338891	2	2	1	1	0.854484501	0.277661109	1.764126171	1.764126171	1	0	NA	0	NA	NA	0	NA	NA	0	NA	NA	1	1	1.17E-13	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	166730277	C	A	-	-	-	-	-	-	27	0	0	32	13	40.6	22	8	36.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.432758483	1.216379242	2	3.920982456	1.960491228	2	NA	NA	1	NA	NA	1	4	NA	1	1	3.88E-22	1	1.17E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	166782124	T	C	-	-	-	-	-	-	47	0	0	54	18	33.3	36	6	16.7	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	NA	5	NA	3	NA	2	NA	1	NA	NA	NA	NA	NA	NA	NA	NA	1	1.965912281	1.965912281	1	NA	NA	1	NA	NA	1	NA	NA	1	1	3.12E-28	1	2.68E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	166955757	A	G	RPS6KA2	CCDS5294.1	r.?	-	-	intronic	41	0	0	24	14	58.3	27	9	33.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.327345309	1.163672655	2	2.921052632	1.460526316	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.14E-26	1	8.44E-15	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	166962656	G	C	ZBBX	CCDS3199.2	r.?	-	-	intronic	49	0	0	49	7	14.3	38	5	13.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	0.713858283	0.713858283	1	1.553894737	1.553894737	1	NA	NA	0	NA	NA	1	4	NA	1	1	5.58E-09	1	0.00000137	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	166963697	G	C	-	-	-	-	-	-	50	0	0	54	4	7.4	37	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.443409182	0.443409182	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.000161898	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	35152112	G	C	DLGAP4	CCDS13274.1	r.?	-	-	intronic	41	0	0	37	6	16.2	38	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	4.362325493	2	2	1	2	1	0.637674507	NA	3	NA	2	NA	0.362325493	0.808706587	0.808706587	1	0	0	1	NA	NA	0	NA	NA	0	3	NA	1	1	3.18E-08	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	167087536	G	C	RPS6KA2	ENST00000510118	r.?	-	-	intronic	32	0	0	31	11	35.5	22	6	27.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.417165669	1.417165669	1	2.394736842	1.197368421	2	NA	NA	1	NA	NA	1	4	NA	1	1	3.77E-18	1	1.09E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	167110369	G	A	-	-	-	-	-	-	62	0	0	36	17	47.2	34	5	14.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.854484501	2.277661109	2	1	0	1	0.145515499	0.722338891	2	2	1	1	0.854484501	0.277661109	2.287548221	1.143774111	2	1.330289867	1.330289867	1	NA	NA	0	NA	NA	0	4	NA	1	1	6.00E-30	1	0.000000771	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	167173036	A	C	-	-	-	-	-	-	35	0	0	46	15	32.6	35	4	11.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.953397206	0.976698603	2	1.228	1.228	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.35E-23	1	0.0000289	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	167341079	G	A	ODZ2	ENST00000403607	r.?	-	-	intronic	45	0	0	46	9	19.6	37	3	8.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.17443513	1.17443513	1	0.872526316	0.872526316	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.82E-12	1	0.000855237	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	167497342	G	T	-	-	-	-	-	-	53	1	1.9	25	6	24	25	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	2.854484501	2.277661109	2	1	0	1	0.145515499	0.722338891	2	2	1	1	0.854484501	0.277661109	1.163160113	1.163160113	1	0	NA	0	NA	NA	0	NA	NA	0	NA	NA	0.233303855	1	2.55E-09	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	21	46649914	T	C	ADARB1	CCDS33590.1	r.?	-	-	downstream	21	0	0	49	29	59.2	21	4	19	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.319395774	5	3	4	0	1	0.680604226	1	3	NA	1	NA	0.319395774	NA	3.144355751	1.048118584	3	2.236666667	2.236666667	1	NA	NA	0	NA	NA	1	4	NA	1	1	4.78E-54	1	0.00000349	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	167514163	G	A	-	-	-	-	-	-	71	0	0	68	22	32.4	45	13	28.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.941413174	0.970706587	2	3.113087719	1.55654386	2	NA	NA	1	NA	NA	1	4	NA	1	1	7.67E-34	1	7.68E-20	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	167520932	C	A	-	-	-	-	-	-	69	0	0	55	16	29.1	29	4	13.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.743676647	0.871838323	2	1.486526316	1.486526316	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.78E-24	1	0.0000134	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	167560730	T	A	ODZ2	ENST00000403607	r.?	-	-	intronic	62	0	0	50	7	14	49	1	2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.838882236	0.838882236	1	0.215438596	0.215438596	1	NA	NA	1	NA	NA	1	4	NA	1	1	6.46E-09	1	0.217776325	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	167733813	G	A	WWC1	CCDS4366.1	r.?	-	-	intronic	40	0	0	42	13	31	27	9	33.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.85752495	0.928762475	2	3.587052632	1.793526316	2	NA	NA	1	NA	NA	1	4	NA	1	1	2.72E-20	1	8.44E-15	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	167847367	T	A	SPOCK3	CCDS34095.1	r.?	-	-	intronic	57	0	0	36	7	19.4	25	4	16	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.854484501	2.277661109	2	1	0	1	0.145515499	0.722338891	2	2	1	1	0.854484501	0.277661109	0.940221091	0.940221091	1	1.447934549	1.447934549	1	NA	NA	0	NA	NA	0	4	NA	1	1	5.74E-10	1	0.00000727	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	22	26978838	T	C	TPST2	CCDS13839.1	r.?	-	-	intronic	27	0	0	34	12	35.3	28	1	3.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.292921926	5	3	4	0	1	0.707078074	1	3	NA	1	NA	0.292921926	NA	1.865583076	0.932791538	2	0.423789474	0.423789474	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.21E-19	1	0.130947004	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	167966536	T	C	XIRP2	CCDS42769.1	r.?	-	-	intronic	45	0	0	46	12	26.1	35	2	5.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.563916168	1.563916168	1	0.614	0.614	1	NA	NA	1	NA	NA	1	4	NA	1	1	8.12E-18	1	0.013332991	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	167994304	C	G	-	-	-	-	-	-	47	0	0	47	9	19.1	36	2	5.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	0.95347505	0.95347505	1	0.65922807	0.65922807	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.24E-12	1	0.014070883	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	168129232	C	T	-	-	-	-	-	-	56	0	0	47	16	34	32	8	25	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.037285429	1.018642715	2	2.692982456	1.346491228	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.98E-25	1	3.69E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	168194867	G	A	-	-	-	-	-	-	50	0	0	46	11	23.9	33	8	24.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.193091816	1.193091816	1	2.848807018	0.949602339	3	NA	NA	0	NA	NA	1	4	NA	1	1	5.55E-16	1	4.85E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	22	38387314	C	T	SOX10	CCDS13964.1	r.?	-	-	upstream	19	0	0	18	12	66.7	21	5	23.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.292921926	5	3	4	0	1	0.707078074	1	3	NA	1	NA	0.292921926	NA	3.525053575	1.175017858	3	2.801719298	0.933906433	3	NA	NA	0	NA	NA	1	4	NA	1	1	4.41E-24	1	5.95E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	168273710	C	T	MIR551B	ENST00000384984	r.?	-	-	downstream	43	0	0	44	11	25	37	4	10.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.248003992	1.248003992	1	1.271368421	1.271368421	1	NA	NA	0	NA	NA	1	4	NA	1	1	3.22E-16	1	0.0000362	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	168322633	G	C	-	-	-	-	-	-	46	0	0	44	12	27.3	48	2	4.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.362820359	1.362820359	1	0.494421053	0.494421053	1	NA	NA	0	NA	NA	1	4	NA	1	1	4.44E-18	1	0.024220359	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	168337608	G	C	-	-	-	-	-	-	60	0	0	42	19	45.2	34	7	20.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.854484501	2.277661109	2	1	0	1	0.145515499	0.722338891	2	2	1	1	0.854484501	0.277661109	2.190618212	1.095309106	2	1.864215732	1.864215732	1	NA	NA	0	NA	NA	0	4	NA	1	1	7.64E-33	1	3.73E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	168339522	A	T	MLLT4	CCDS47516.1	r.?	-	-	intronic	44	0	0	28	18	64.3	28	7	25	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.566866267	1.283433134	2	2.192982456	1.096491228	2	NA	NA	1	NA	NA	1	4	NA	1	1	4.77E-35	1	8.44E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	168404987	C	A	SLIT3	CCDS4369.1	r.?	-	-	intronic	53	0	0	45	8	17.8	29	6	20.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.066578842	1.066578842	1	2.229789474	1.114894737	2	NA	NA	1	NA	NA	1	4	NA	1	1	7.14E-11	1	6.72E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	22	40080791	G	T	CACNA1I	CCDS46710.1	r.?	-	-	intronic	16	0	0	18	4	22.2	3	0	0	1	0	0	0	0	NA	0	0	NA	1	TRUE	FALSE	3.292921926	5	3	4	0	1	0.707078074	1	3	NA	1	NA	0.292921926	NA	1.173256212	1.173256212	1	0	0	1	NA	NA	0	NA	NA	1	4	NA	1	1	0.00000181	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	168426779	C	A	SLIT3	CCDS4369.1	r.?	-	-	intronic	21	0	0	51	12	23.5	22	5	22.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.408123752	1.408123752	1	2.44522807	1.222614035	2	NA	NA	1	NA	NA	1	4	NA	1	1	3.24E-17	1	7.67E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	168528381	G	A	-	-	-	-	-	-	62	0	0	50	11	22	43	4	9.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.318243513	1.318243513	1	1.001789474	1.001789474	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.52E-15	1	0.000066	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	168595430	C	T	-	-	-	-	-	-	12	0	0	32	15	46.9	17	9	52.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.872255489	0.936127745	2	4.640350877	2.320175439	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.59E-26	1	4.58E-17	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	22	40214707	T	C	ENTHD1	CCDS13998.1	r.?	-	-	intronic	31	0	0	32	17	53.1	27	9	33.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.292921926	5	3	4	0	1	0.707078074	1	3	NA	1	NA	0.292921926	NA	2.806302022	1.036653523	2.707078074	3.920052632	0.980013158	4	NA	NA	0	NA	NA	1	4	NA	1	1	4.02E-31	1	8.44E-15	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	168783013	A	G	-	-	-	-	-	-	53	0	0	45	6	13.3	44	4	9.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.796938124	0.796938124	1	0.980245614	0.980245614	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.000000108	1	0.0000723	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	168792917	A	T	-	-	-	-	-	-	23	0	0	48	17	35.4	34	8	23.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.121173653	1.060586826	2	2.531403509	1.265701754	2	NA	NA	1	NA	NA	1	4	NA	1	1	2.80E-27	1	6.32E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	169027739	C	A	-	-	-	-	-	-	44	0	0	57	22	38.6	28	5	17.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.312918164	1.156459082	2	1.928175439	1.928175439	1	NA	NA	1	NA	NA	1	4	NA	1	1	7.03E-36	1	0.000000279	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	22	41081916	A	G	MCHR1	CCDS14004.1	r.?	-	-	downstream	29	0	0	29	9	31	23	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.292921926	5	3	4	0	1	0.707078074	1	3	NA	1	NA	0.292921926	NA	1.638330747	1.638330747	1	0	0	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.79E-14	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	169079656	C	A	DOCK2	CCDS4371.1	r.?	-	-	intronic	51	0	0	48	8	16.7	38	2	5.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.000666667	1.000666667	1	0.570912281	0.570912281	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.23E-10	1	0.015598339	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	169098150	G	A	DOCK2	CCDS4371.1	r.345g>a	c.293G>A	p.W98*	nonsense	52	0	0	38	12	31.6	22	4	18.2	230	0	0	233	62	26.6	258	34	13.2	3.87E-27	TRUE	TRUE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.893477046	0.946738523	2	1.960491228	1.960491228	1	1.593876248	0.796938124	2	1.421894737	0.710947368	2	4	3	1	1	5.86E-19	2.31E-86	0.00000425	6.74E-37	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	3	169214124	T	C	MECOM	ENST00000494292	r.?	-	-	intronic	59	0	0	51	23	45.1	29	8	27.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	2.251399202	1.125699601	2	3.249052632	1.083017544	3	NA	NA	0	NA	NA	1	4	NA	1	1	2.05E-39	1	1.53E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	169284357	A	T	MECOM	ENST00000494292	r.?	-	-	intronic	54	0	0	54	15	27.8	39	2	5.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.387780439	1.387780439	1	0.600368421	0.600368421	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.20E-22	1	0.016387522	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	22	48998283	G	T	FAM19A5	CCDS46729.1	r.?	-	-	intronic	17	0	0	30	6	20	17	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.292921926	5	3	4	0	1	0.707078074	1	3	NA	1	NA	0.292921926	NA	1.056987579	1.056987579	1	0	0	1	NA	NA	0	NA	NA	1	4	NA	1	1	8.37E-09	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	169646133	C	T	-	-	-	-	-	-	43	0	0	47	17	36.2	33	6	18.2	0	0	NA	0	0	NA	2	0	0	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.16910978	1.08455489	2	1.960491228	1.960491228	1	NA	NA	1	0	0	1	4	NA	1	1	1.81E-27	1	1.54E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	169678158	T	G	SELL	ENST00000236147	r.?	-	-	intronic	42	0	0	59	7	11.9	47	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.7130499	0.7130499	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	2.12E-08	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	169712092	C	T	PALLD	CCDS34098.1	r.?	-	-	intronic	61	0	0	48	11	22.9	43	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	2.854484501	2.277661109	2	1	0	1	0.145515499	0.722338891	2	2	1	1	0.854484501	0.277661109	1.109848607	1.109848607	1	0	NA	0	NA	NA	0	NA	NA	0	NA	NA	1	1	9.31E-16	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	170076646	T	C	KCNIP1	CCDS4374.1	r.?	-	-	intronic	57	0	0	57	18	31.6	39	7	17.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.893477046	0.946738523	2	1.928175439	1.928175439	1	NA	NA	1	NA	NA	1	4	NA	1	1	9.84E-28	1	1.04E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	170124720	C	T	LRP2	CCDS2232.1	r.?	-	-	intronic	40	0	0	33	12	36.4	33	6	18.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.181093812	1.090546906	2	1.960491228	1.960491228	1	NA	NA	1	NA	NA	1	4	NA	1	1	7.86E-20	1	1.54E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	170124721	T	G	LRP2	CCDS2232.1	r.?	-	-	intronic	41	1	2.4	34	12	35.3	33	6	18.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.115181637	1.057590818	2	1.960491228	1.960491228	1	NA	NA	1	NA	NA	1	4	NA	0.18577148	1	1.21E-19	1	1.54E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	170187245	G	T	-	-	-	-	-	-	25	0	0	60	16	26.7	26	8	30.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.599868263	0.799934132	2	3.317754386	1.658877193	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.86E-23	1	5.63E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	170196902	C	A	-	-	-	-	-	-	43	0	0	24	10	41.7	33	14	42.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.664670659	0.832335329	2	3.719298246	1.859649123	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.80E-17	1	4.57E-24	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	170555225	G	T	CLDN11	ENST00000486975	r.?	-	-	intronic	34	0	0	34	5	14.7	21	2	9.5	0	0	NA	0	0	NA	1	0	0	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	0.733826347	0.733826347	1	1.118333333	1.118333333	1	NA	NA	0	0	0	1	4	NA	1	1	0.000000771	1	0.004928472	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	4613856	C	A	-	-	-	-	-	-	41	0	0	64	6	9.4	39	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	6	4.32434803	5	2	1	2	1	0.67565197	NA	3	NA	2	NA	0.32434803	0.751249501	0.751249501	1	0	NA	0	NA	NA	0	NA	NA	0	NA	NA	1	1	0.000000914	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	170751469	G	C	-	-	-	-	-	-	47	0	0	33	18	54.5	30	8	26.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.175648703	1.087824351	2	2.342105263	1.171052632	2	NA	NA	1	NA	NA	1	4	NA	1	1	3.68E-33	1	2.07E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	170870121	A	C	UBR3	CCDS2238.2	r.?	-	-	intronic	48	0	0	50	21	42	29	4	13.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.516646707	1.258323353	2	1.486526316	1.486526316	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.79E-35	1	0.0000134	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	170887430	T	G	TNIK	CCDS46956.1	r.?	-	-	intronic	61	0	0	68	16	23.5	52	9	17.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.173123752	1.173123752	1	2.03654386	1.01827193	2	NA	NA	0	NA	NA	1	4	NA	1	1	1.75E-22	1	5.92E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	170912891	A	G	C1orf129	CCDS41436.1	r.?	-	-	intronic	56	0	0	49	14	28.6	30	4	13.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.713716567	0.856858283	2	1.432666667	1.432666667	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.50E-21	1	0.0000154	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	171019023	G	T	-	-	-	-	-	-	28	0	0	40	8	20	34	1	2.9	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	2.854484501	2.277661109	2	1	0	1	0.145515499	0.722338891	2	2	1	1	0.854484501	0.277661109	0.969300094	0.969300094	1	0.262438137	NA	0	NA	NA	0	NA	NA	0	NA	NA	1	1	2.61E-11	1	0.156694864	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	171068481	C	T	-	-	-	-	-	-	45	0	0	43	17	39.5	36	11	30.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.366846307	1.183423154	2	3.296210526	1.648105263	2	NA	NA	1	NA	NA	1	4	NA	1	1	2.84E-28	1	2.62E-17	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	171133048	C	T	FMO6P	ENST00000367754	r.?	-	-	downstream	48	0	0	29	10	34.5	21	1	4.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.067245509	1.033622754	2	0.517052632	0.517052632	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.79E-16	1	0.099912572	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	171214185	A	C	MYO3B	CCDS42773.1	r.?	-	-	intronic	23	0	0	51	11	21.6	27	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.294275449	1.294275449	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	1.94E-15	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	5307316	C	G	-	-	-	-	-	-	37	0	0	73	11	15.1	31	0	0	151	0	0	240	16	6.7	140	1	0.7	0.755134701	FALSE	FALSE	6	4.32434803	5	2	1	2	1	0.67565197	NA	3	NA	2	NA	0.32434803	1.206794411	1.206794411	1	0	NA	0	0.53546507	0.53546507	1	0.077673945	NA	0	NA	NA	1	1	1.31E-13	1.85E-13	1	0.504285863	YES	1_1	0_0	somatic	custom.pulldown.HiSeq
PD9852b	20	41527517	G	A	PTPRT	CCDS42874.1	r.?	-	-	intronic	26	0	0	43	15	34.9	31	3	9.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	5	2	3	2	2	1	1	NA	NA	NA	NA	NA	NA	2.091213573	1.045606786	2	1.141877193	1.141877193	1	NA	NA	0	NA	NA	1	4	NA	1	1	4.05E-24	1	0.000505952	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	5560315	C	T	-	-	-	-	-	-	37	0	0	38	17	44.7	24	2	8.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	4.32434803	5	2	1	2	1	0.67565197	NA	3	NA	2	NA	0.32434803	3.572431138	0.893107784	4	0.920991062	0.920991062	1	NA	NA	0	NA	NA	0	4	NA	1	1	1.99E-29	1	0.006413403	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	171588451	T	G	-	-	-	-	-	-	45	0	0	57	11	19.3	47	1	2.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.156459082	1.156459082	1	0.226210526	0.226210526	1	NA	NA	1	NA	NA	1	4	NA	1	1	7.29E-15	1	0.209895027	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	171600689	T	C	MYOC	CCDS1297.1	r.?	-	-	downstream	54	0	0	50	18	36	33	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.157125749	1.078562874	2	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	5.92E-29	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	171650247	T	C	UBTD2	CCDS4379.2	r.?	-	-	intronic	45	0	0	56	20	35.7	41	5	12.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.139149701	1.06957485	2	1.314175439	1.314175439	1	NA	NA	1	NA	NA	1	4	NA	1	1	6.31E-32	1	0.00000202	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	172069717	C	T	-	-	-	-	-	-	63	0	0	43	6	14	32	4	12.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.854484501	2.277661109	2	1	0	1	0.145515499	0.722338891	2	2	1	1	0.854484501	0.277661109	0.678510066	0.678510066	1	1.131198867	1.131198867	1	NA	NA	0	NA	NA	0	4	NA	1	1	8.13E-08	1	0.0000201	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	172112657	A	T	-	-	-	-	-	-	49	0	0	29	18	62.1	30	4	13.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.854484501	2.277661109	2	1	0	1	0.145515499	0.722338891	2	2	1	1	0.854484501	0.277661109	3.009676791	1.504838396	2	1.203595594	1.203595594	1	NA	NA	0	NA	NA	0	4	NA	1	1	1.25E-34	1	0.0000154	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	172150961	G	T	-	-	-	-	-	-	56	0	0	39	14	35.9	47	7	14.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.151133733	1.075566866	2	1.605017544	1.605017544	1	NA	NA	1	NA	NA	1	4	NA	1	1	8.19E-23	1	4.12E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	172222264	G	A	-	-	-	-	-	-	49	0	0	40	14	35	22	1	4.5	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	2.854484501	2.277661109	2	1	0	1	0.145515499	0.722338891	2	2	1	1	0.854484501	0.277661109	1.696275164	0.848137582	2	0.407231592	NA	0	NA	NA	0	NA	NA	0	NA	NA	1	1	1.25E-22	1	0.104413009	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	172369355	T	C	ERGIC1	CCDS34292.1	r.?	-	-	intronic	20	0	0	28	4	14.3	32	5	15.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.856858283	0.856858283	1	1.680421053	1.680421053	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.0000116	1	0.000000562	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	172379082	G	A	ERGIC1	CCDS34292.1	r.2275g>a	c.?	p.?	3'UTR variant	34	0	0	34	7	20.6	27	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.234355289	1.234355289	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	3.73E-10	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	6537884	G	A	-	-	-	-	-	-	44	0	0	59	33	55.9	43	10	23.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7	4.32434803	4	2	3	2	1	0.67565197	NA	3	NA	2	NA	0.32434803	5.026536926	1.256634232	4	2.58543274	1.112325997	2.32434803	NA	NA	1	NA	NA	0	4	NA	1	1	4.06E-60	1	1.61E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	172410029	G	A	-	-	-	-	-	-	40	0	0	38	8	21.1	35	3	8.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.854484501	2.277661109	2	1	0	1	0.145515499	0.722338891	2	2	1	1	0.854484501	0.277661109	1.022611599	1.022611599	1	0.77826482	0.77826482	1	NA	NA	0	NA	NA	0	4	NA	1	1	1.67E-11	1	0.000725791	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	172417583	A	T	-	-	-	-	-	-	55	0	0	43	8	18.6	37	4	10.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.854484501	2.277661109	2	1	0	1	0.145515499	0.722338891	2	2	1	1	0.854484501	0.277661109	0.901449087	0.901449087	1	0.977355821	0.977355821	1	NA	NA	0	NA	NA	0	4	NA	1	1	4.85E-11	1	0.0000362	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	172564391	C	G	C5orf41	CCDS34293.1	r.?	-	-	downstream	45	0	0	48	15	31.2	41	7	17.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.869508982	0.934754491	2	1.842	1.842	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.86E-23	1	1.51E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	172779817	T	G	-	-	-	-	-	-	64	0	0	46	5	10.9	51	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.653129741	0.653129741	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.00000361	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	172890294	G	T	GALNTL6	CCDS34104.1	r.?	-	-	intronic	28	0	0	35	6	17.1	17	0	0	195	0	0	147	18	12.2	129	0	0	1	FALSE	FALSE	2.854484501	2.277661109	2	1	0	1	0.145515499	0.722338891	2	2	1	1	0.854484501	0.277661109	0.82875158	0.82875158	1	0	NA	0	0.591273057	0.691964637	0.854484501	0	NA	0	NA	NA	1	1	2.24E-08	1.12E-19	1	1	YES	1_1	0_0	somatic	custom.pulldown.HiSeq
PD9852b	2	173088036	G	A	-	-	-	-	-	-	59	0	0	54	8	14.8	29	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.886818363	0.886818363	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	3.31E-10	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	173089613	G	A	-	-	-	-	-	-	48	0	0	42	5	11.9	29	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	0.5940499	0.5940499	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	0.00000228	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	173179179	G	A	NLGN1	CCDS3222.1	r.?	-	-	intronic	56	0	0	52	9	17.3	31	1	3.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	0.863618762	0.863618762	1	0.376701754	0.376701754	1	NA	NA	0	NA	NA	1	4	NA	1	1	5.92E-12	1	0.143917729	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	173267366	G	A	-	-	-	-	-	-	54	0	0	39	12	30.8	32	4	12.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.845540918	0.922770459	2	1.346491228	1.346491228	1	NA	NA	1	NA	NA	1	4	NA	1	1	8.43E-19	1	0.0000201	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	173399896	G	T	GALNTL6	CCDS34104.1	r.?	-	-	intronic	38	0	0	23	9	39.1	33	3	9.1	1	0	0	0	0	NA	0	0	NA	1	TRUE	FALSE	2.854484501	2.277661109	2	1	0	1	0.145515499	0.722338891	2	2	1	1	0.854484501	0.277661109	1.894981683	0.947490842	2	0.823512775	0.823512775	1	NA	NA	0	NA	NA	0	4	NA	1	1	1.50E-15	1	0.000609557	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	173489227	G	T	NLGN1	CCDS3222.1	r.?	-	-	intronic	57	0	0	50	21	42	37	9	24.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	2.096646707	1.048323353	2	2.860578947	0.953526316	3	NA	NA	0	NA	NA	1	4	NA	1	1	2.79E-35	1	2.14E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	173561047	C	A	-	-	-	-	-	-	52	0	0	73	9	12.3	51	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	0.983017964	0.983017964	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	1.42E-10	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	173664209	C	G	-	-	-	-	-	-	50	0	0	75	6	8	33	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	0.639361277	0.639361277	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.00000234	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	173677195	T	C	-	-	-	-	-	-	43	0	0	52	12	23.1	46	8	17.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	1.846155689	0.923077844	2	2.222315789	1.111157895	2	NA	NA	1	NA	NA	1	4	NA	1	1	4.19E-17	1	8.61E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	173850211	A	T	RAPGEF4	CCDS42775.1	r.1283a>u	c.1140A>T	p.G380G	silent	46	0	0	44	15	34.1	34	4	11.8	303	1	0.3	260	71	27.3	164	23	14	1.73E-19	TRUE	TRUE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.043277445	1.021638723	2	1.271087719	1.271087719	1	1.635820359	0.81791018	2	1.508070175	0.754035088	2	4	3	1	0.781025539	6.12E-24	1.47E-99	0.0000257	4.06E-26	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	2	174089160	G	C	ENSG00000091436	CCDS2251.1	r.4465g>c	c.?	p.?	3'UTR variant	65	0	0	50	8	16	36	0	0	0	0	NA	1	0	0	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.958722555	0.958722555	1	0	0	1	0	0	1	NA	NA	1	3	NA	1	1	1.74E-10	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	174099378	A	G	GALNT7	CCDS3815.1	r.?	-	-	intronic	46	0	0	29	5	17.2	22	2	9.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.854484501	2.277661109	2	1	0	1	0.145515499	0.722338891	2	2	1	1	0.854484501	0.277661109	0.833598081	0.833598081	1	0.823512775	0.823512775	1	NA	NA	0	NA	NA	0	4	NA	1	1	0.000000336	1	0.005403392	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	7156287	A	T	STS	CCDS14127.1	r.?	-	-	intronic	73	0	0	71	4	5.6	46	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	6.732316688	4.32434803	5	2	1	2	0.267683312	0.67565197	5	3	2	2	0.732316688	0.32434803	0.488562629	0.488562629	1	0	NA	0	NA	NA	0	NA	NA	0	NA	NA	1	1	0.000464961	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	174219855	G	T	GALNT7	CCDS3815.1	r.?	-	-	intronic	59	0	0	42	13	31	29	3	10.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.854484501	2.277661109	2	1	0	1	0.145515499	0.722338891	2	2	1	1	0.854484501	0.277661109	1.502415145	1.502415145	1	0.932107866	0.932107866	1	NA	NA	0	NA	NA	0	4	NA	1	1	2.72E-20	1	0.000414371	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	174286830	G	T	-	-	-	-	-	-	58	0	0	69	18	26.1	32	6	18.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	2.085916168	1.042958084	2	2.401122807	0.800374269	3	NA	NA	1	NA	NA	1	4	NA	1	1	5.16E-26	1	1.27E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	8442096	C	A	ENSG00000227978	ENST00000418307	r.?	-	-	intronic	49	0	0	48	22	45.8	30	0	0	111	0	0	246	75	30.5	244	8	3.3	0.003480978	FALSE	TRUE	6.732316688	4.32434803	5	2	1	2	0.267683312	0.67565197	5	3	2	2	0.732316688	0.32434803	3.995744356	0.998936089	4	0	NA	0	2.66092146	0.88697382	3	0.366177169	1.128963753	0.32434803	NA	3	1	1	5.76E-38	3.13E-109	1	0.0000382	YES	1_1	0_1	somatic	custom.pulldown.HiSeq
PD9852b	4	174420091	C	G	-	-	-	-	-	-	45	0	0	33	5	15.2	28	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	2.854484501	2.277661109	2	1	0	1	0.145515499	0.722338891	2	2	1	1	0.854484501	0.277661109	0.736668071	0.736668071	1	0	NA	0	NA	NA	0	NA	NA	0	NA	NA	1	1	0.00000066	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	174690387	T	C	-	-	-	-	-	-	46	0	0	45	21	46.7	25	4	16	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.854484501	2.277661109	2	1	0	1	0.145515499	0.722338891	2	2	1	1	0.854484501	0.277661109	2.263315719	1.13165786	2	1.447934549	1.447934549	1	NA	NA	0	NA	NA	0	4	NA	1	1	1.60E-36	1	0.00000727	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	174856011	G	T	NAALADL2	CCDS46960.1	r.?	-	-	intronic	47	0	0	59	17	28.8	37	1	2.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.437700599	1.437700599	1	0.317842105	0.317842105	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.74E-25	1	0.169281299	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	174902859	C	T	SFXN1	CCDS4394.1	r.?	-	-	upstream	46	0	0	47	26	55.3	39	7	17.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	3	3	3	3	1	1	NA	NA	NA	NA	NA	NA	4.41958483	1.473194943	3	2.286175439	1.143087719	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.69E-47	1	1.04E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	53083494	G	A	-	-	-	-	-	-	46	0	0	61	22	36.1	45	4	8.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	5	3	3	3	2	1	1	NA	NA	NA	NA	NA	NA	2.885117764	0.961705921	3	1.047701754	1.047701754	1	NA	NA	1	NA	NA	0	4	NA	1	1	4.38E-35	1	0.0000791	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	175121613	G	A	NAALADL2	CCDS46960.1	r.?	-	-	intronic	45	0	0	52	8	15.4	22	5	22.7	0	0	NA	0	0	NA	1	0	0	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	0.768770459	0.768770459	1	2.67222807	0.89074269	3	NA	NA	0	0	0	1	4	NA	1	1	2.42E-10	1	7.67E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	175254593	C	T	NAALADL2	CCDS46960.1	r.?	-	-	intronic	31	0	0	33	8	24.2	15	2	13.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.208067864	1.208067864	1	1.565666667	1.565666667	1	NA	NA	0	NA	NA	1	4	NA	1	1	4.85E-12	1	0.002513772	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	175284492	C	T	CPLX2	CCDS4396.1	r.?	-	-	intronic	52	0	0	53	8	15.1	34	1	2.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	3	3	3	3	1	1	NA	NA	NA	NA	NA	NA	1.206794411	1.206794411	1	0.370385965	0.370385965	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.83E-10	1	0.156694864	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	175315182	A	G	CPLX2	CCDS4396.1	r.?	-	-	downstream	22	0	0	38	7	18.4	18	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	3	3	3	3	1	1	NA	NA	NA	NA	NA	NA	1.470530938	1.470530938	1	0	0	1	NA	NA	1	NA	NA	1	4	NA	1	1	8.61E-10	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	8530272	G	A	KAL1	CCDS14130.1	r.?	-	-	intronic	34	0	0	66	16	24.2	44	6	13.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6.732316688	4.32434803	5	2	1	2	0.267683312	0.67565197	5	3	2	2	0.732316688	0.32434803	2.111288503	1.055644251	2	1.509093788	1.509093788	1	NA	NA	0	NA	NA	0	4	NA	1	1	1.03E-22	1	9.37E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	175545816	A	G	-	-	-	-	-	-	27	0	0	36	15	41.7	27	2	7.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	2.081670659	1.040835329	2	0.871122807	0.871122807	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.54E-25	1	0.00807567	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	175577388	A	G	-	-	-	-	-	-	43	0	0	44	22	50	16	2	12.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	2.496007984	1.248003992	2	1.471491228	1.471491228	1	NA	NA	0	NA	NA	1	4	NA	1	1	4.51E-39	1	0.002863359	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	175643406	A	G	-	-	-	-	-	-	21	0	0	47	12	25.5	29	8	27.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.527964072	1.527964072	1	2.973052632	1.486526316	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.09E-17	1	1.53E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	175762757	T	A	-	-	-	-	-	-	49	0	0	37	5	13.5	35	7	20	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.854484501	2.277661109	2	1	0	1	0.145515499	0.722338891	2	2	1	1	0.854484501	0.277661109	0.654277563	0.654277563	1	1.809918187	1.809918187	1	NA	NA	0	NA	NA	0	4	NA	1	1	0.00000119	1	4.65E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	175860732	G	T	-	-	-	-	-	-	7	0	0	39	13	33.3	13	1	7.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	3	3	3	3	1	1	NA	NA	NA	NA	NA	NA	2.661341317	0.887113772	3	0.983438596	0.983438596	1	NA	NA	1	NA	NA	1	4	NA	1	1	8.79E-21	1	0.063085307	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	8783354	C	T	-	-	-	-	-	-	66	0	0	95	61	64.2	40	10	25	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6.732316688	4.32434803	5	2	1	2	0.267683312	0.67565197	5	3	2	2	0.732316688	0.32434803	5.601021565	1.120204313	5	2.774069464	1.193482829	2.32434803	NA	NA	0	NA	NA	0	4	NA	1	1	2.53E-115	1	7.22E-15	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	176033908	T	G	-	-	-	-	-	-	59	0	0	61	26	42.6	34	12	35.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	2.126598802	1.063299401	2	4.155491228	1.385163743	3	NA	NA	0	NA	NA	1	4	NA	1	1	1.53E-43	1	1.21E-19	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	176073263	T	C	-	-	-	-	-	-	39	0	0	52	6	11.5	30	1	3.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	0.574081836	0.574081836	1	0.388473684	0.388473684	1	NA	NA	0	NA	NA	1	4	NA	1	1	0.000000261	1	0.139615808	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	176163412	G	C	RFWD2	CCDS30944.1	r.?	-	-	intronic	56	0	0	47	6	12.8	33	3	9.1	0	0	NA	0	0	NA	1	0	0	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.766978044	0.766978044	1	0.980245614	0.980245614	1	NA	NA	1	0	0	1	4	NA	1	1	0.000000141	1	0.000609557	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	176215604	C	T	-	-	-	-	-	-	49	0	0	47	10	21.3	22	5	22.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.063299401	1.063299401	1	2.67222807	0.89074269	3	NA	NA	0	NA	NA	1	4	NA	1	1	4.27E-14	1	7.67E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	176232707	G	C	-	-	-	-	-	-	35	0	0	64	9	14.1	42	1	2.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.844874251	0.844874251	1	0.258526316	0.258526316	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.20E-11	1	0.189842622	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	176330668	A	C	-	-	-	-	-	-	45	0	0	42	13	31	24	4	16.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.854484501	2.277661109	2	1	0	1	0.145515499	0.722338891	2	2	1	1	0.854484501	0.277661109	1.502415145	1.502415145	1	1.511281686	1.511281686	1	NA	NA	0	NA	NA	0	4	NA	1	1	2.72E-20	1	0.00000613	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	176378721	G	A	-	-	-	-	-	-	60	0	0	55	18	32.7	34	6	17.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.959389222	0.979694611	2	1.895859649	1.895859649	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.61E-28	1	1.86E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	176378776	G	A	-	-	-	-	-	-	54	0	0	41	10	24.4	26	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	2.854484501	2.277661109	2	1	0	1	0.145515499	0.722338891	2	2	1	1	0.854484501	0.277661109	1.182546114	1.182546114	1	0	NA	0	NA	NA	0	NA	NA	0	NA	NA	1	1	9.51E-15	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	9065061	C	A	-	-	-	-	-	-	56	0	0	79	5	6.3	39	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	6.732316688	4.32434803	5	2	1	2	0.267683312	0.67565197	5	3	2	2	0.732316688	0.32434803	0.549632957	0.549632957	1	0	NA	0	NA	NA	0	NA	NA	0	NA	NA	1	1	0.0000518	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	9525237	G	T	TBL1X	CCDS14133.1	r.?	-	-	intronic	31	0	0	76	8	10.5	29	3	10.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6.732316688	4.32434803	5	2	1	2	0.267683312	0.67565197	5	3	2	2	0.732316688	0.32434803	0.916054929	0.916054929	1	1.142916619	1.142916619	1	NA	NA	0	NA	NA	0	4	NA	1	1	5.44E-09	1	0.000414371	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	176627923	C	T	-	-	-	-	-	-	39	0	0	38	19	50	30	6	20	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	2.496007984	1.248003992	2	2.354385965	1.177192982	2	NA	NA	0	NA	NA	1	4	NA	1	1	6.16E-34	1	8.37E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	176636528	C	A	-	-	-	-	-	-	56	0	0	34	16	47.1	32	12	37.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	2.351239521	1.17561976	2	4.414473684	1.471491228	3	NA	NA	0	NA	NA	1	4	NA	1	1	3.09E-28	1	5.03E-20	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	176646302	G	A	-	-	-	-	-	-	44	0	0	54	12	22.2	27	5	18.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.330227545	1.330227545	1	1.992807018	1.992807018	1	NA	NA	1	NA	NA	1	4	NA	1	1	6.90E-17	1	0.00000023	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	176697640	G	T	PAPPA2	CCDS41438.1	r.?	-	-	intronic	46	0	0	66	18	27.3	40	8	20	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.635820359	0.81791018	2	2.154385965	1.077192982	2	NA	NA	1	NA	NA	1	4	NA	1	1	2.08E-26	1	2.61E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	176726025	G	A	-	-	-	-	-	-	53	0	0	49	5	10.2	34	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.611185629	0.611185629	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.00000496	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	176834261	C	A	ASTN1	CCDS1319.1	r.?	-	-	intronic	63	0	0	67	20	29.9	27	3	11.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.791612774	0.895806387	2	1.195684211	1.195684211	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.42E-30	1	0.000334187	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	9613905	T	C	TBL1X	CCDS14133.1	r.?	-	-	intronic	42	0	0	66	7	10.6	43	8	18.6	188	1	0.5	389	33	8.5	249	12	4.8	1.02E-05	TRUE	TRUE	6.732316688	4.32434803	5	2	1	2	0.267683312	0.67565197	5	3	2	2	0.732316688	0.32434803	0.924779262	0.924779262	1	2.063907681	1.03195384	2	0.741568276	1.012633316	0.732316688	0.532621337	0.532621337	1	4	3	1	0.610292126	0.000000047	1.73E-29	4.85E-11	7.42E-09	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	4	176855988	A	G	GPM6A	CCDS3824.1	r.?	-	-	intronic	50	0	0	36	6	16.7	25	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	2.854484501	2.277661109	2	1	0	1	0.145515499	0.722338891	2	2	1	1	0.854484501	0.277661109	0.809365578	0.809365578	1	0	NA	0	NA	NA	0	NA	NA	0	NA	NA	1	1	2.68E-08	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	177051010	A	T	-	-	-	-	-	-	41	0	0	49	16	32.7	28	6	21.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.632389222	0.816194611	2	2.519192982	0.839730994	3	NA	NA	0	NA	NA	1	4	NA	1	1	4.37E-25	1	5.36E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	177270004	G	A	-	-	-	-	-	-	49	0	0	52	10	19.2	34	1	2.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	0.958467066	0.958467066	1	0.341385965	0.341385965	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.28E-13	1	0.156694864	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	177270006	G	A	-	-	-	-	-	-	48	0	0	53	9	17	34	1	2.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	0.848642715	0.848642715	1	0.341385965	0.341385965	1	NA	NA	0	NA	NA	1	4	NA	1	1	7.10E-12	1	0.156694864	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	21	32948259	G	A	-	-	-	-	-	-	16	0	0	31	10	32.3	29	6	20.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.559012765	5	2	3	2	2	0.440987235	1	3	NA	2	NA	0.559012765	NA	2.115982281	1.05799114	2	2.436789474	0.812263158	3	NA	NA	0	NA	NA	1	4	NA	1	1	3.94E-16	1	6.72E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	177371595	T	C	-	-	-	-	-	-	28	0	0	37	14	37.8	33	2	6.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.264982036	1.132491018	2	0.657087719	0.657087719	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.35E-23	1	0.011909843	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	177393203	C	T	-	-	-	-	-	-	28	0	0	48	5	10.4	24	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	3	3	3	3	1	1	NA	NA	NA	NA	NA	NA	0.831169661	0.831169661	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.00000447	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	177423091	T	C	-	-	-	-	-	-	53	0	0	41	9	22	27	1	3.7	46	0	0	217	21	9.7	206	16	7.8	4.61E-10	FALSE	TRUE	2.854484501	2.277661109	2	1	0	1	0.145515499	0.722338891	2	2	1	1	0.854484501	0.277661109	1.066230103	1.066230103	1	0.334834865	NA	0	0.470110546	0.470110546	1	0.705868093	0.705868093	1	NA	3	1	1	5.92E-13	1.57E-20	0.126579904	1.72E-14	YES	1_1	0_1	somatic	custom.pulldown.HiSeq
PD9852b	4	177444541	A	T	-	-	-	-	-	-	37	0	0	43	13	30.2	39	7	17.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.854484501	2.277661109	2	1	0	1	0.145515499	0.722338891	2	2	1	1	0.854484501	0.277661109	1.463643142	1.463643142	1	1.619876777	1.619876777	1	NA	NA	0	NA	NA	0	4	NA	1	1	3.88E-20	1	1.04E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	177464510	A	T	-	-	-	-	-	-	49	0	0	47	19	40.4	37	6	16.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.420774451	1.210387226	2	1.745052632	1.745052632	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.16E-31	1	3.18E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	11682553	C	A	ARHGAP6	CCDS14140.1	r.1269g>u	c.396G>T	p.K132N	missense	9	0	0	69	6	8.7	16	1	6.2	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	6.732316688	4.32434803	5	2	1	2	0.267683312	0.67565197	5	3	2	2	0.732316688	0.32434803	0.759016941	0.759016941	1	0.687969227	NA	0	NA	NA	0	NA	NA	0	NA	NA	1	1	0.00000143	1	0.077068876	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	177904663	G	A	-	-	-	-	-	-	39	0	0	50	6	12	35	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.719041916	0.719041916	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.000000206	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	178104551	G	T	-	-	-	-	-	-	41	0	0	51	10	19.6	27	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	3	3	3	3	1	1	NA	NA	NA	NA	NA	NA	1.56643513	1.56643513	1	0	0	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.04E-13	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	13072969	T	A	-	-	-	-	-	-	52	0	0	64	7	10.9	47	8	17	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6.732316688	4.32434803	5	2	1	2	0.267683312	0.67565197	5	3	2	2	0.732316688	0.32434803	0.950952259	0.950952259	1	1.886367235	0.943183618	2	NA	NA	0	NA	NA	0	4	NA	1	1	3.78E-08	1	1.03E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	178274402	C	T	NEIL3	CCDS3828.1	r.?	-	-	intronic	26	0	0	38	9	23.7	28	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	2.854484501	2.277661109	2	1	0	1	0.145515499	0.722338891	2	2	1	1	0.854484501	0.277661109	1.148620611	1.148620611	1	0	NA	0	NA	NA	0	NA	NA	0	NA	NA	1	1	2.79E-13	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	17314939	C	A	-	-	-	-	-	-	40	0	0	54	32	59.3	48	18	37.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	4.32434803	3	2	3	2	1	0.67565197	NA	3	NA	2	NA	0.32434803	4.739265469	1.579755156	3	4.161104195	1.790224244	2.32434803	NA	NA	1	NA	NA	0	4	NA	1	1	1.63E-59	1	2.42E-29	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	178330071	C	A	ZFP2	CCDS4440.1	r.?	-	-	intronic	53	0	0	60	13	21.7	33	3	9.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	3	3	3	3	1	1	NA	NA	NA	NA	NA	NA	1.734267465	0.867133733	2	1.162245614	1.162245614	1	NA	NA	1	NA	NA	1	4	NA	1	1	5.07E-18	1	0.000609557	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	178481778	C	T	-	-	-	-	-	-	43	0	0	48	11	22.9	24	4	16.7	2	0	0	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	3	3	3	3	1	1	NA	NA	NA	NA	NA	NA	1.830171657	0.915085828	2	2.132912281	2.132912281	1	NA	NA	1	NA	NA	1	4	NA	1	1	9.31E-16	1	0.00000613	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	178534673	C	A	-	-	-	-	-	-	39	0	0	32	12	37.5	36	6	16.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.247005988	1.123502994	2	1.798912281	1.798912281	1	NA	NA	1	NA	NA	1	4	NA	1	1	5.03E-20	1	2.68E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	178633240	T	C	-	-	-	-	-	-	28	0	0	46	5	10.9	37	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	0.544129741	0.544129741	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	0.00000361	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	178642802	G	T	-	-	-	-	-	-	46	0	0	45	9	20	43	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.198403194	1.198403194	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	1.47E-12	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	178690179	C	T	-	-	-	-	-	-	57	0	0	56	8	14.3	41	1	2.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	0.713858283	0.713858283	1	0.282526316	0.282526316	1	NA	NA	0	NA	NA	1	4	NA	1	1	4.48E-10	1	0.18577148	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	18232050	G	T	BEND2	CCDS14184.1	r.?	-	-	intronic	39	0	0	62	14	22.6	43	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	7.364463357	4.32434803	5	2	2	2	0.635536643	0.67565197	6	3	2	2	0.364463357	0.32434803	2.114564327	1.057282164	2	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	1.42E-19	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	178902490	A	G	PDE11A	CCDS42786.1	r.?	-	-	intronic	59	0	0	48	15	31.2	34	4	11.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.869508982	0.934754491	2	1.271087719	1.271087719	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.86E-23	1	0.0000257	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	178952085	A	G	PIK3CA	CCDS43171.1	r.3297a>g	c.3140A>G	p.H1047R	missense	55	0	0	42	13	31	35	4	11.4	182	0	0	474	195	41.1	463	60	13	3.54E-46	TRUE	TRUE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.54752495	1.54752495	1	1.342	1.342	1	2.051718563	1.025859281	2	1.530350877	0.765175439	2	4	3	1	1	2.72E-20	5.06128500435029e-312	0.0000289	2.26E-63	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	X	19074285	G	T	GPR64	CCDS43923.1	r.?	-	-	intronic	39	0	0	107	6	5.6	32	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	7.364463357	4.32434803	5	2	2	2	0.635536643	0.67565197	6	3	2	2	0.364463357	0.32434803	0.523962842	0.523962842	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	0.0000183	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	179153122	C	A	-	-	-	-	-	-	28	0	0	22	10	45.5	20	4	20	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.854484501	2.277661109	2	1	0	1	0.145515499	0.722338891	2	2	1	1	0.854484501	0.277661109	2.205157713	1.102578857	2	1.809918187	1.809918187	1	NA	NA	0	NA	NA	0	4	NA	1	1	5.98E-18	1	0.00000284	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	179261825	G	A	SOAT1	CCDS1330.1	r.?	-	-	upstream	35	0	0	39	11	28.2	35	9	25.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.689748503	0.844874251	2	2.768385965	1.384192982	2	NA	NA	1	NA	NA	1	4	NA	1	1	7.20E-17	1	1.23E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	23860208	G	T	APOO	CCDS14208.1	r.?	-	-	intronic	42	0	0	85	59	69.4	41	11	26.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7.594031116	4.32434803	6	2	1	2	0.405968884	0.67565197	6	3	2	2	0.594031116	0.32434803	6.652716676	1.108786113	6	2.973802465	1.279413593	2.32434803	NA	NA	0	NA	NA	0	4	NA	1	1	7.69E-115	1	1.34E-16	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	24235568	C	T	ZFX	CCDS14211.1	r.?	-	-	downstream	40	0	0	96	9	9.4	39	7	17.9	139	0	0	486	47	9.7	237	38	16	2.06E-33	TRUE	TRUE	7.594031116	4.32434803	6	2	1	2	0.405968884	0.67565197	6	3	2	2	0.594031116	0.32434803	0.901088426	0.901088426	1	1.986233736	0.993116868	2	0.929846567	0.929846567	1	1.775404457	0.887702228	2	4	3	1	1	1.71E-09	5.99E-44	1.04E-09	1.99E-44	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	2	179477980	T	C	TTN	ENST00000356127	r.42077a>g	c.41852A>G	p.K13951R	missense	44	0	0	52	22	42.3	37	6	16.2	130	0	0	278	108	38.8	242	61	25.2	2.15E-65	TRUE	TRUE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.534622754	1.267311377	2	1.745052632	1.745052632	1	2.324902196	1.162451098	2	2.714526316	1.357263158	2	4	3	1	1	5.59E-37	2.96E-170	3.18E-08	2.28E-83	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	1	179503395	T	A	C1orf125	CCDS30948.1	r.?	-	-	intronic	60	0	0	49	5	10.2	32	0	0	0	0	NA	0	0	NA	2	0	0	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.611185629	0.611185629	1	0	0	1	NA	NA	1	0	0	1	3	NA	1	1	0.00000496	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	179640064	C	T	PEX5L	CCDS3236.1	r.?	-	-	intronic	31	0	0	44	16	36.4	24	4	16.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.817093812	0.908546906	2	1.965912281	1.965912281	1	NA	NA	0	NA	NA	1	4	NA	1	1	5.57E-26	1	0.00000613	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	25259259	A	T	-	-	-	-	-	-	50	0	0	54	13	24.1	40	12	30	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7.594031116	4.32434803	6	2	1	2	0.405968884	0.67565197	6	3	2	2	0.594031116	0.32434803	2.310237347	0.960210817	2.405968884	3.328883356	1.432179395	2.32434803	NA	NA	0	NA	NA	0	4	NA	1	1	1.12E-18	1	1.20E-18	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	179809991	G	A	-	-	-	-	-	-	17	0	0	46	13	28.3	30	2	6.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	3	3	3	3	1	1	NA	NA	NA	NA	NA	NA	2.261740519	1.130870259	2	0.855719298	0.855719298	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.07E-19	1	0.009909649	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	179841088	C	T	-	-	-	-	-	-	53	0	0	33	10	30.3	30	2	6.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.854484501	2.277661109	2	1	0	1	0.145515499	0.722338891	2	2	1	1	0.854484501	0.277661109	1.468489642	1.468489642	1	0.606322593	0.606322593	1	NA	NA	0	NA	NA	0	4	NA	1	1	8.14E-16	1	0.009909649	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	179841632	T	C	-	-	-	-	-	-	48	0	0	51	5	9.8	38	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	0.489217565	0.489217565	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	0.00000606	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	179916348	C	A	-	-	-	-	-	-	34	0	0	43	13	30.2	26	4	15.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.809588822	0.904794411	2	1.658877193	1.658877193	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.88E-20	1	0.00000856	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	179918877	A	G	-	-	-	-	-	-	45	0	0	30	18	60	28	7	25	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.854484501	2.277661109	2	1	0	1	0.145515499	0.722338891	2	2	1	1	0.854484501	0.277661109	2.907900282	1.453950141	2	2.262397733	1.770733818	1.277661109	NA	NA	0	NA	NA	0	4	NA	1	1	3.12E-34	1	8.44E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	179974009	G	A	-	-	-	-	-	-	56	0	0	38	8	21.1	41	2	4.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.854484501	2.277661109	2	1	0	1	0.145515499	0.722338891	2	2	1	1	0.854484501	0.277661109	1.022611599	1.022611599	1	0.443429956	0.443429956	1	NA	NA	0	NA	NA	0	4	NA	1	1	1.67E-11	1	0.018015855	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	179991416	A	G	-	-	-	-	-	-	46	0	0	49	6	12.2	22	4	18.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	0.609025948	0.609025948	1	2.142491228	2.142491228	1	NA	NA	0	NA	NA	1	4	NA	1	1	0.000000182	1	0.00000425	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	180140840	A	G	-	-	-	-	-	-	46	0	0	38	8	21.1	32	3	9.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.854484501	2.277661109	2	1	0	1	0.145515499	0.722338891	2	2	1	1	0.854484501	0.277661109	1.022611599	1.022611599	1	0.850661548	0.850661548	1	NA	NA	0	NA	NA	0	4	NA	1	1	1.67E-11	1	0.000556213	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	180201273	G	A	-	-	-	-	-	-	31	0	0	61	19	31.1	36	3	8.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	3	3	3	3	1	1	NA	NA	NA	NA	NA	NA	2.485516966	0.828505655	3	1.060070175	1.060070175	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.64E-29	1	0.000788827	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	25596924	G	T	-	-	-	-	-	-	49	0	0	70	5	7.1	40	1	2.5	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	7.594031116	4.32434803	6	2	1	2	0.405968884	0.67565197	6	3	2	2	0.594031116	0.32434803	0.680609343	0.680609343	1	0.277406946	NA	0	NA	NA	0	NA	NA	0	NA	NA	1	1	0.0000289	1	0.181679879	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	180420404	A	G	BTNL3	CCDS47358.1	r.?	-	-	intronic	43	0	0	39	10	25.6	25	3	12	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	3	3	3	3	1	1	NA	NA	NA	NA	NA	NA	2.045956088	1.022978044	2	1.532631579	1.532631579	1	NA	NA	1	NA	NA	1	4	NA	1	1	5.44E-15	1	0.00026475	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	180579538	T	A	ZNF385B	CCDS33339.1	r.?	-	-	intronic	35	0	0	38	13	34.2	34	7	20.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.049269461	1.024634731	2	2.219017544	1.109508772	2	NA	NA	1	NA	NA	1	4	NA	1	1	5.88E-21	1	3.73E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	180663030	C	A	FXR1	CCDS33894.1	r.?	-	-	intronic	38	0	0	39	5	12.8	32	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	0.638978044	0.638978044	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	0.00000156	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	180768815	C	T	-	-	-	-	-	-	57	0	0	54	20	37	41	4	9.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.217045908	1.108522954	2	1.055649123	1.055649123	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.61E-32	1	0.0000546	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	27705934	C	A	-	-	-	-	-	-	40	0	0	58	21	36.2	30	3	10	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5.430558574	4.32434803	3	2	2	2	0.569441426	0.67565197	4	3	2	2	0.430558574	0.32434803	2.686971984	0.895657328	3	1.109627785	1.109627785	1	NA	NA	0	NA	NA	0	4	NA	1	1	1.34E-33	1	0.000458697	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	180877153	G	T	-	-	-	-	-	-	51	0	0	39	6	15.4	36	4	11.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.854484501	2.277661109	2	1	0	1	0.145515499	0.722338891	2	2	1	1	0.854484501	0.277661109	0.746361072	0.746361072	1	1.004504594	1.004504594	1	NA	NA	0	NA	NA	0	4	NA	1	1	4.43E-08	1	0.0000324	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	180991618	C	T	-	-	-	-	-	-	52	0	0	45	7	15.6	42	1	2.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.934754491	0.934754491	1	0.258526316	0.258526316	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.000000003	1	0.189842622	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	181015302	A	T	-	-	-	-	-	-	57	0	0	52	9	17.3	28	4	14.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.854484501	2.277661109	2	1	0	1	0.145515499	0.722338891	2	2	1	1	0.854484501	0.277661109	0.838444581	0.838444581	1	1.294091503	1.294091503	1	NA	NA	0	NA	NA	0	4	NA	1	1	5.92E-12	1	0.0000116	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	181127376	C	T	-	-	-	-	-	-	46	0	0	50	17	34	33	6	18.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.037285429	1.018642715	2	1.960491228	1.960491228	1	NA	NA	1	NA	NA	1	4	NA	1	1	6.43E-27	1	1.54E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	181231729	T	A	-	-	-	-	-	-	36	0	0	41	6	14.6	36	0	0	144	0	0	180	10	5.6	173	0	0	1	FALSE	FALSE	2.854484501	2.277661109	2	1	0	1	0.145515499	0.722338891	2	2	1	1	0.854484501	0.277661109	0.707589069	0.707589069	1	0	NA	0	0.271404026	0.271404026	1	0	NA	0	NA	NA	1	1	6.05E-08	3.44E-08	1	1	YES	1_1	0_0	somatic	custom.pulldown.HiSeq
PD9852b	4	181297012	G	T	-	-	-	-	-	-	43	0	0	36	18	50	27	5	18.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.854484501	2.277661109	2	1	0	1	0.145515499	0.722338891	2	2	1	1	0.854484501	0.277661109	2.423250235	1.211625117	2	1.674174323	1.674174323	1	NA	NA	0	NA	NA	0	4	NA	1	1	3.18E-32	1	0.00000023	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	181333930	G	T	-	-	-	-	-	-	45	0	0	35	7	20	30	5	16.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.854484501	2.277661109	2	1	0	1	0.145515499	0.722338891	2	2	1	1	0.854484501	0.277661109	0.969300094	0.969300094	1	1.511281686	1.511281686	1	NA	NA	0	NA	NA	0	4	NA	1	1	4.65E-10	1	0.000000401	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	181395456	G	T	-	-	-	-	-	-	58	0	0	45	10	22.2	43	5	11.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.330227545	1.330227545	1	1.24954386	1.24954386	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.66E-14	1	0.00000257	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	28296003	G	T	-	-	-	-	-	-	56	0	0	59	5	8.5	51	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	5	4.32434803	4	2	1	2	1	0.67565197	NA	3	NA	2	NA	0.32434803	0.594321357	0.594321357	1	0	NA	0	NA	NA	0	NA	NA	0	NA	NA	1	1	0.0000125	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	29470810	G	C	IL1RAPL1	CCDS14218.1	r.?	-	-	intronic	52	0	0	54	5	9.3	33	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	5	4.32434803	4	2	1	2	1	0.67565197	NA	3	NA	2	NA	0.32434803	0.650257485	0.650257485	1	0	NA	0	NA	NA	0	NA	NA	0	NA	NA	1	1	0.00000806	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	181861421	T	G	-	-	-	-	-	-	64	0	0	37	11	29.7	32	4	12.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.779628743	0.889814371	2	1.346491228	1.346491228	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.70E-17	1	0.0000201	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	30061593	C	T	-	-	-	-	-	-	44	0	0	58	40	69	36	17	47.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5	4.32434803	4	2	1	2	1	0.67565197	NA	3	NA	2	NA	0.32434803	4.824491018	1.206122754	4	5.237443147	2.253295582	2.32434803	NA	NA	0	NA	NA	0	4	NA	1	1	3.75E-78	1	6.00E-30	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	181947492	C	A	-	-	-	-	-	-	40	0	0	45	20	44.4	30	5	16.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.854484501	2.277661109	2	1	0	1	0.145515499	0.722338891	2	2	1	1	0.854484501	0.277661109	2.151846208	1.075923104	2	1.511281686	1.511281686	1	NA	NA	0	NA	NA	0	4	NA	1	1	2.68E-34	1	0.000000401	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	182548426	G	A	NEUROD1	CCDS2283.1	r.?	-	-	upstream	10	0	0	21	8	38.1	5	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.282958084	1.141479042	2	0	0	1	NA	NA	1	NA	NA	1	4	NA	1	1	7.50E-14	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	182564527	T	C	RGS16	CCDS1348.1	r.?	-	-	downstream	18	0	0	49	14	28.6	38	5	13.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.713716567	0.856858283	2	1.421894737	1.421894737	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.50E-21	1	0.00000137	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	182614660	G	A	-	-	-	-	-	-	41	0	0	43	6	14	27	0	0	226	0	0	199	30	15.1	168	6	3.6	0.007232453	FALSE	TRUE	2.854484501	2.277661109	2	1	0	1	0.145515499	0.722338891	2	2	1	1	0.854484501	0.277661109	0.678510066	0.678510066	1	0	NA	0	0.731821571	0.856448034	0.854484501	0.325785274	1.173319789	0.277661109	NA	3	1	1	8.13E-08	1.43E-34	1	0.000223484	YES	1_1	0_1	somatic	custom.pulldown.HiSeq
PD9852b	X	31959338	C	T	DMD	CCDS14233.1	r.?	-	-	intronic	52	0	0	71	45	63.4	41	9	22	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5	4.32434803	3	2	2	2	1	0.67565197	NA	3	NA	2	NA	0.32434803	4.432938124	1.477646041	3	2.441181128	1.05026489	2.32434803	NA	NA	1	NA	NA	0	4	NA	1	1	4.41E-85	1	5.92E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	182688308	G	A	-	-	-	-	-	-	45	0	0	49	13	26.5	28	6	21.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.587884232	0.793942116	2	2.305192982	1.152596491	2	NA	NA	1	NA	NA	1	4	NA	1	1	2.71E-19	1	5.36E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	182707887	T	G	-	-	-	-	-	-	46	0	0	43	5	11.6	32	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.695073852	0.695073852	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.00000257	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	182759608	C	A	MCCC1	CCDS3241.1	r.?	-	-	intronic	46	0	0	44	8	18.2	31	3	9.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	0.908546906	0.908546906	1	1.141877193	1.141877193	1	NA	NA	0	NA	NA	1	4	NA	1	1	5.90E-11	1	0.000505952	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	182870612	C	A	-	-	-	-	-	-	40	0	0	33	10	30.3	28	1	3.6	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	2.854484501	2.277661109	2	1	0	1	0.145515499	0.722338891	2	2	1	1	0.854484501	0.277661109	1.468489642	1.468489642	1	0.325785274	NA	0	NA	NA	0	NA	NA	0	NA	NA	1	1	8.14E-16	1	0.130947004	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	182930195	A	T	PPP1R1C	CCDS46468.1	r.?	-	-	intronic	66	0	0	53	17	32.1	50	8	16	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.923437126	0.961718563	2	1.723508772	1.723508772	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.08E-26	1	1.74E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	183055416	G	C	-	-	-	-	-	-	63	0	0	43	7	16.3	32	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	2.854484501	2.277661109	2	1	0	1	0.145515499	0.722338891	2	2	1	1	0.854484501	0.277661109	0.789979576	0.789979576	1	0	NA	0	NA	NA	0	NA	NA	0	NA	NA	1	1	2.15E-09	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	183179125	C	T	PDE1A	CCDS2285.1	r.?	-	-	intronic	45	0	0	49	6	12.2	27	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.731025948	0.731025948	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.000000182	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	183387407	G	A	PDE1A	CCDS33344.1	r.59c>u	c.?	p.?	5'UTR variant	51	0	0	51	8	15.7	35	1	2.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.940746507	0.940746507	1	0.312385965	0.312385965	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.05E-10	1	0.16091139	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	183390706	G	T	NMNAT2	CCDS1353.1	r.?	-	-	upstream	42	0	0	59	6	10.2	33	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.611185629	0.611185629	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.000000561	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	183390708	G	C	NMNAT2	CCDS1353.1	r.?	-	-	upstream	40	0	0	59	6	10.2	30	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.611185629	0.611185629	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.000000561	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	32134374	C	A	DMD	CCDS14233.1	r.?	-	-	intronic	39	0	0	56	11	19.6	33	0	0	0	0	NA	0	0	NA	2	0	0	1	FALSE	FALSE	5	4.32434803	3	2	2	2	1	0.67565197	NA	3	NA	2	NA	0.32434803	1.37043513	1.37043513	1	0	NA	0	NA	NA	1	0	NA	0	NA	NA	1	1	5.91E-15	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	183710248	G	A	RGL1	CCDS1359.1	r.?	-	-	intronic	56	0	0	62	21	33.9	28	3	10.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.031293413	1.015646707	2	1.152596491	1.152596491	1	NA	NA	1	NA	NA	1	4	NA	1	1	7.22E-33	1	0.000372895	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	183732230	T	A	RGL1	CCDS1359.1	r.?	-	-	intronic	42	0	0	46	5	10.9	30	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.653129741	0.653129741	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.00000361	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	183906784	G	C	NCKAP1	CCDS2288.1	r.?	-	-	upstream	58	0	0	43	5	11.6	38	2	5.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.695073852	0.695073852	1	0.570912281	0.570912281	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.00000257	1	0.015598339	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	183910703	A	G	-	-	-	-	-	-	35	0	0	55	24	43.6	26	3	11.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.612518962	1.306259481	2	1.23877193	1.23877193	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.28E-40	1	0.000298167	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	183939407	C	T	GLT25D2	CCDS1360.1	r.?	-	-	intronic	41	0	0	34	8	23.5	34	10	29.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.408123752	1.408123752	1	3.166947368	1.583473684	2	NA	NA	1	NA	NA	1	4	NA	1	1	6.32E-12	1	1.15E-15	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	184010436	C	T	ECE2	CCDS3256.2	r.3062c>u	c.?	p.?	3'UTR variant	18	0	0	50	19	38	18	4	22.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.896966068	0.948483034	2	2.613368421	0.871122807	3	NA	NA	0	NA	NA	1	4	NA	1	1	5.00E-31	1	0.00000181	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	184126081	G	A	-	-	-	-	-	-	39	0	0	39	12	30.8	27	5	18.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.845540918	0.922770459	2	1.992807018	1.992807018	1	NA	NA	1	NA	NA	1	4	NA	1	1	8.43E-19	1	0.00000023	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	184149918	G	A	EIF2B5	ENST00000444495	r.?	-	-	intronic	38	0	0	41	9	22	34	2	5.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.098243513	1.098243513	1	0.69454386	0.69454386	1	NA	NA	0	NA	NA	1	4	NA	1	1	5.92E-13	1	0.012612579	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	184479349	C	T	-	-	-	-	-	-	41	0	0	50	19	38	29	6	20.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.276966068	1.138483034	2	2.229789474	1.114894737	2	NA	NA	1	NA	NA	1	4	NA	1	1	5.00E-31	1	6.72E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	32138001	C	A	DMD	CCDS14233.1	r.?	-	-	intronic	47	0	0	64	14	21.9	30	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	5	4.32434803	3	2	2	2	1	0.67565197	NA	3	NA	2	NA	0.32434803	1.531251497	1.531251497	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	2.31E-19	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	184805728	C	T	-	-	-	-	-	-	45	0	0	50	7	14	37	2	5.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.838882236	0.838882236	1	0.581684211	0.581684211	1	NA	NA	1	NA	NA	1	4	NA	1	1	6.46E-09	1	0.014826063	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	184811783	C	G	-	-	-	-	-	-	57	0	0	46	18	39.1	28	4	14.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.342878244	1.171439122	2	1.540385965	1.540385965	1	NA	NA	1	NA	NA	1	4	NA	1	1	9.41E-30	1	0.0000116	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	185064571	G	A	MAP3K13	CCDS3270.1	r.?	-	-	intronic	44	0	0	43	8	18.6	31	5	16.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	0.92851497	0.92851497	1	1.895280702	1.895280702	1	NA	NA	0	NA	NA	1	4	NA	1	1	4.85E-11	1	0.000000476	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	185447799	G	A	-	-	-	-	-	-	54	0	0	41	6	14.6	43	6	14	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.874834331	0.874834331	1	1.508070175	1.508070175	1	NA	NA	1	NA	NA	1	4	NA	1	1	6.05E-08	1	8.13E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	185557961	T	A	ZNF804A	CCDS2291.1	r.?	-	-	intronic	57	0	0	54	5	9.3	33	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.557257485	0.557257485	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.00000806	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	32696090	G	A	DMD	CCDS14233.1	r.?	-	-	intronic	58	0	0	83	10	12	35	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	7	4.32434803	4	2	3	2	1	0.67565197	NA	3	NA	2	NA	0.32434803	1.079041916	1.079041916	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	1.70E-11	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	185841532	G	A	-	-	-	-	-	-	41	0	0	48	17	35.4	42	3	7.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.121173653	1.060586826	2	0.764807018	0.764807018	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.80E-27	1	0.001240292	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	185841533	C	A	-	-	-	-	-	-	41	0	0	48	17	35.4	42	3	7.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.121173653	1.060586826	2	0.764807018	0.764807018	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.80E-27	1	0.001240292	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	185907136	T	C	-	-	-	-	-	-	52	0	0	53	9	17	32	5	15.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.018642715	1.018642715	1	1.680421053	1.680421053	1	NA	NA	1	NA	NA	1	4	NA	1	1	7.10E-12	1	0.000000562	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	186032120	C	G	-	-	-	-	-	-	37	0	0	39	15	38.5	30	6	20	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.854484501	2.277661109	2	1	0	1	0.145515499	0.722338891	2	2	1	1	0.854484501	0.277661109	1.865902681	0.93295134	2	1.809918187	1.809918187	1	NA	NA	0	NA	NA	0	4	NA	1	1	6.85E-25	1	8.37E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	186165515	T	G	SNX25	CCDS34116.1	r.?	-	-	intronic	43	0	0	64	24	37.5	50	11	22	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.854484501	2.277661109	2	1	0	1	0.145515499	0.722338891	2	2	1	1	0.854484501	0.277661109	1.817437676	0.908718838	2	1.990910005	1.55824576	1.277661109	NA	NA	0	NA	NA	0	4	NA	1	1	1.23E-38	1	1.52E-15	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	186386910	G	T	C1orf27	ENST00000287859	r.?	-	-	intronic	66	0	0	58	18	31	35	1	2.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.85752495	0.928762475	2	0.312385965	0.312385965	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.42E-27	1	0.16091139	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	186434138	C	T	KNG1	CCDS43183.1	r.?	-	-	upstream	31	0	0	39	15	38.5	33	4	12.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.921926148	0.960963074	2	1.424403509	1.424403509	1	NA	NA	0	NA	NA	1	4	NA	1	1	6.85E-25	1	0.0000228	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	186599237	G	T	FSIP2	ENST00000424728	r.?	-	-	upstream	43	0	0	50	13	26	37	4	10.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.557924152	1.557924152	1	1.163368421	1.163368421	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.65E-19	1	0.0000362	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	186735099	C	A	-	-	-	-	-	-	33	0	0	27	9	33.3	18	7	38.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.995341317	0.997670659	2	4.190280702	2.095140351	2	NA	NA	1	NA	NA	1	4	NA	1	1	8.44E-15	1	2.37E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	33614268	C	A	-	-	-	-	-	-	46	0	0	50	8	16	34	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	6	4.32434803	5	2	1	2	1	0.67565197	NA	3	NA	2	NA	0.32434803	1.278722555	1.278722555	1	0	NA	0	NA	NA	0	NA	NA	0	NA	NA	1	1	1.74E-10	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	187082416	C	A	-	-	-	-	-	-	54	0	0	41	11	26.8	30	6	20	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.605860279	1.605860279	1	2.154385965	1.077192982	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.34E-16	1	8.37E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	33740834	C	A	-	-	-	-	-	-	49	0	0	79	8	10.1	43	5	11.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	4.32434803	5	2	1	2	1	0.67565197	NA	3	NA	2	NA	0.32434803	0.807193613	0.807193613	1	1.287168231	1.287168231	1	NA	NA	0	NA	NA	0	4	NA	1	1	7.43E-09	1	0.00000257	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	187147270	C	G	-	-	-	-	-	-	31	0	0	36	8	22.2	30	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.330227545	1.330227545	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	1.04E-11	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	187189140	C	A	-	-	-	-	-	-	54	0	0	55	16	29.1	49	6	12.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.743676647	0.871838323	2	1.314175439	1.314175439	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.78E-24	1	0.000000182	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	187204484	G	A	F11	CCDS3847.1	r.?	-	-	intronic	30	0	0	62	27	43.5	26	7	26.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	2.277661109	2	1	2	1	1	0.722338891	NA	2	NA	1	NA	0.277661109	2.606526946	1.303263473	2	2.434339961	1.905309588	1.277661109	NA	NA	1	NA	NA	0	4	NA	1	1	1.76E-45	1	4.73E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	187600634	G	A	-	-	-	-	-	-	53	0	0	54	7	13	40	1	2.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.778962076	0.778962076	1	0.269298246	0.269298246	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.13E-08	1	0.181679879	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	187724684	G	A	-	-	-	-	-	-	40	0	0	50	25	50	34	10	29.4	0	0	NA	0	0	NA	2	0	0	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.996007984	1.498003992	2	3.166947368	1.583473684	2	NA	NA	1	0	0	1	4	NA	1	1	3.34E-44	1	1.15E-15	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	34306904	A	C	-	-	-	-	-	-	48	0	0	63	4	6.3	33	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	6.241955165	4.32434803	4	2	2	2	0.758044835	0.67565197	4	3	3	2	0.241955165	0.32434803	0.518740181	0.518740181	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	0.000294233	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	187848054	T	A	-	-	-	-	-	-	47	0	0	65	24	36.9	38	8	21.1	159	0	0	416	139	33.4	314	32	10.2	3.80E-22	TRUE	TRUE	4	2.277661109	2	1	2	1	1	0.722338891	NA	2	NA	1	NA	0.277661109	2.211053892	1.105526946	2	1.909463687	1.494499342	1.277661109	2.001333333	1.000666667	2	0.923058275	0.923058275	1	4	3	1	1	1.94E-38	1.87E-207	1.67E-11	3.50E-31	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	1	188133454	A	T	-	-	-	-	-	-	56	0	0	56	13	23.2	31	7	22.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.390147705	1.390147705	1	2.43445614	1.21722807	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.89E-18	1	1.85E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	188320752	G	T	-	-	-	-	-	-	49	0	0	59	18	30.5	34	3	8.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.82756487	0.913782435	2	0.947929825	0.947929825	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.03E-27	1	0.000666058	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	188477628	G	A	LPP	CCDS3291.1	r.?	-	-	intronic	42	0	0	35	12	34.3	21	2	9.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.712261477	0.856130739	2	1.118333333	1.118333333	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.83E-19	1	0.004928472	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	188519255	A	T	-	-	-	-	-	-	46	1	2.2	53	15	28.3	32	1	3.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.695740519	0.847870259	2	0.333929825	0.333929825	1	NA	NA	1	NA	NA	1	4	NA	0.205924651	1	1.60E-22	1	0.14819814	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	188555560	G	C	LPP	CCDS3291.1	r.?	-	-	intronic	45	0	0	54	14	25.9	34	4	11.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.292932136	1.292932136	1	1.389087719	1.389087719	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.64E-20	1	0.0000257	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	188597843	G	A	-	-	-	-	-	-	24	0	0	53	12	22.6	32	9	28.1	358	0	0	486	140	28.8	357	39	10.9	9.06E-28	TRUE	TRUE	4	2.277661109	2	1	2	1	1	0.722338891	NA	2	NA	1	NA	0.277661109	1.354195609	1.354195609	1	2.542935052	1.990304812	1.277661109	1.725700599	0.862850299	2	0.986405412	0.986405412	1	4	3	1	1	5.39E-17	2.73E-198	4.94E-14	7.83E-39	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	1	188752790	C	A	-	-	-	-	-	-	29	0	0	38	14	36.8	27	6	22.2	0	0	NA	1	0	0	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.205061876	1.102530938	2	2.391368421	1.195684211	2	0	0	1	NA	NA	1	4	NA	1	1	5.28E-23	1	4.23E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	188883651	G	A	-	-	-	-	-	-	40	0	0	40	6	15	32	3	9.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.898802395	0.898802395	1	1.012561404	1.012561404	1	NA	NA	1	NA	NA	1	4	NA	1	1	5.18E-08	1	0.000556213	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	189045410	G	A	TPRG1	CCDS3292.1	r.?	-	-	downstream	63	0	0	47	10	21.3	37	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.063299401	1.063299401	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	4.27E-14	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	189078654	T	G	-	-	-	-	-	-	53	0	0	42	6	14.3	34	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.856858283	0.856858283	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	7.02E-08	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	189102459	T	G	-	-	-	-	-	-	58	0	0	54	21	38.9	43	6	14	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.330894212	1.165447106	2	1.508070175	1.508070175	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.12E-34	1	8.13E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	189116735	A	T	-	-	-	-	-	-	45	0	0	56	14	25	25	3	12	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	2.277661109	2	1	2	1	1	0.722338891	NA	2	NA	1	NA	0.277661109	1.498003992	1.498003992	1	1.085950912	1.085950912	1	NA	NA	1	NA	NA	0	4	NA	1	1	2.91E-20	1	0.00026475	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	189158988	A	G	-	-	-	-	-	-	50	0	0	47	9	19.1	37	2	5.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	0.95347505	0.95347505	1	0.635684211	0.635684211	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.24E-12	1	0.014826063	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	35962962	G	A	CXorf22	CCDS14237.2	r.?	-	-	intronic	52	0	0	50	30	60	38	16	42.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6.241955165	4.32434803	4	2	2	2	0.758044835	0.67565197	4	3	3	2	0.241955165	0.32434803	4.94038268	1.23509567	4	4.671532977	2.009825085	2.32434803	NA	NA	0	NA	NA	0	4	NA	1	1	3.98E-56	1	3.06E-27	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	189222597	C	A	-	-	-	-	-	-	25	0	0	39	8	20.5	25	3	12	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	2.277661109	2	1	2	1	1	0.722338891	NA	2	NA	1	NA	0.277661109	1.228363273	1.228363273	1	1.085950912	1.085950912	1	NA	NA	1	NA	NA	0	4	NA	1	1	2.09E-11	1	0.00026475	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	189457058	G	T	-	-	-	-	-	-	52	0	0	48	12	25	32	7	21.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.498003992	1.498003992	1	2.359052632	1.179526316	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.44E-17	1	2.36E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	189612800	T	C	-	-	-	-	-	-	55	0	0	59	8	13.6	28	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.814914172	0.814914172	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	6.90E-10	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	22	37254229	C	T	NCF4	CCDS13935.1	r.?	-	-	upstream	35	0	0	19	7	36.8	16	5	31.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.292921926	5	3	4	0	1	0.707078074	1	3	NA	1	NA	0.292921926	NA	1.944857145	0.972428572	2	3.672842105	0.918210526	4	NA	NA	0	NA	NA	1	4	NA	1	1	3.73E-12	1	0.000000013	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	189979886	T	G	COL5A2	CCDS33350.1	r.?	-	-	intronic	53	0	0	46	18	39.1	40	8	20	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.342878244	1.171439122	2	2.154385965	1.077192982	2	NA	NA	1	NA	NA	1	4	NA	1	1	9.41E-30	1	2.61E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	190186702	C	G	-	-	-	-	-	-	38	0	0	26	5	19.2	31	2	6.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	2.277661109	2	1	2	1	1	0.722338891	NA	2	NA	1	NA	0.277661109	1.150467066	1.150467066	1	0.588223411	0.588223411	1	NA	NA	1	NA	NA	0	4	NA	1	1	0.000000188	1	0.010558179	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	37305377	A	G	PRRG1	CCDS14239.1	r.?	-	-	intronic	59	0	0	70	40	57.1	45	13	28.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6.241955165	4.32434803	4	2	2	2	0.758044835	0.67565197	4	3	3	2	0.241955165	0.32434803	4.701597517	1.175399379	4	3.2068243	1.379666151	2.32434803	NA	NA	0	NA	NA	0	4	NA	1	1	4.35E-73	1	7.68E-20	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	190279198	T	C	FAM5C	CCDS1373.1	r.?	-	-	intronic	39	0	0	44	13	29.5	36	7	19.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.767644711	0.883822355	2	2.089754386	1.044877193	2	NA	NA	1	NA	NA	1	4	NA	1	1	5.49E-20	1	5.74E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	190427868	G	T	SLC40A1	CCDS2299.1	r.?	-	-	intronic	52	0	0	42	12	28.6	31	4	12.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.713716567	0.856858283	2	1.389578947	1.389578947	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.35E-18	1	0.0000177	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	38860084	C	G	-	-	-	-	-	-	63	0	0	64	23	35.9	32	4	12.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6.241955165	4.32434803	4	2	2	2	0.758044835	0.67565197	4	3	3	2	0.241955165	0.32434803	2.955995637	0.985331879	3	1.387034732	1.387034732	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.44E-36	1	0.0000201	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	190706256	C	A	-	-	-	-	-	-	41	0	0	58	13	22.4	36	4	11.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.118211577	1.118211577	1	1.306684211	1.306684211	1	NA	NA	0	NA	NA	1	4	NA	1	1	3.12E-18	1	0.0000324	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	191388511	C	A	-	-	-	-	-	-	40	0	0	39	4	10.3	25	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	0.514177645	0.514177645	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	0.0000447	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	191441135	C	T	-	-	-	-	-	-	43	0	0	46	8	17.4	27	5	18.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.042610778	1.042610778	1	1.992807018	1.992807018	1	NA	NA	1	NA	NA	1	4	NA	1	1	8.61E-11	1	0.00000023	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	45844914	C	A	-	-	-	-	-	-	46	0	0	54	4	7.4	30	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	6.241955165	4.32434803	4	2	2	2	0.758044835	0.67565197	4	3	3	2	0.241955165	0.32434803	0.609313864	0.609313864	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	0.000161898	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	191687145	T	A	-	-	-	-	-	-	50	0	0	54	14	25.9	25	1	4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.551932136	1.551932136	1	0.430877193	0.430877193	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.64E-20	1	0.117779757	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	191832384	G	A	-	-	-	-	-	-	39	0	0	53	15	28.3	31	5	16.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.695740519	0.847870259	2	1.734280702	1.734280702	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.60E-22	1	0.000000476	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	192319876	C	T	-	-	-	-	-	-	40	0	0	46	15	32.6	39	4	10.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.953397206	0.976698603	2	1.109508772	1.109508772	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.35E-23	1	0.0000447	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	192597768	C	A	C3orf59	CCDS3302.2	r.?	-	-	intronic	30	0	0	53	15	28.3	36	5	13.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.412740519	1.412740519	1	1.636298246	1.636298246	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.60E-22	1	0.00000104	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	192798378	C	T	-	-	-	-	-	-	34	0	0	49	8	16.3	31	3	9.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	0.813698603	0.813698603	1	1.141877193	1.141877193	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.47E-10	1	0.000505952	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	193317639	C	T	OPA1	CCDS33917.1	r.?	-	-	intronic	40	0	0	53	23	43.4	33	5	15.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	2.16653493	1.083267465	2	1.789333333	1.789333333	1	NA	NA	0	NA	NA	1	4	NA	1	1	6.43E-39	1	0.00000066	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	193431834	G	C	-	-	-	-	-	-	58	0	0	61	31	50.8	51	10	19.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	2.535944112	1.267972056	2	2.307298246	1.153649123	2	NA	NA	0	NA	NA	1	4	NA	1	1	9.37E-55	1	1.04E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	193601069	T	C	-	-	-	-	-	-	44	0	0	59	21	35.6	39	4	10.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.133157685	1.066578842	2	1.109508772	1.109508772	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.06E-33	1	0.0000447	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	193622422	T	G	-	-	-	-	-	-	43	0	0	40	4	10	52	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.599201597	0.599201597	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.0000495	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	193643283	T	G	-	-	-	-	-	-	47	0	0	58	18	31	40	8	20	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.54752495	0.773762475	2	2.354385965	1.177192982	2	NA	NA	0	NA	NA	1	4	NA	1	1	1.42E-27	1	2.61E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	193643545	T	G	-	-	-	-	-	-	40	0	0	45	4	8.9	37	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.533289421	0.533289421	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.0000791	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	193782521	T	A	-	-	-	-	-	-	37	0	0	50	10	20	41	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.198403194	1.198403194	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	8.36E-14	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	193857822	G	C	-	-	-	-	-	-	51	0	0	55	13	23.6	44	4	9.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.414115768	1.414115768	1	0.980245614	0.980245614	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.46E-18	1	0.0000723	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	13882290	G	A	GPM6B	CCDS48084.1	r.?	-	-	intronic	38	0	0	64	8	12.5	50	5	10	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6.732316688	4.32434803	5	2	1	2	0.267683312	0.67565197	5	3	2	2	0.732316688	0.32434803	1.090541582	1.090541582	1	1.109627785	1.109627785	1	NA	NA	0	NA	NA	0	4	NA	1	1	1.35E-09	1	0.00000549	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	194021571	G	T	-	-	-	-	-	-	55	0	0	45	17	37.8	33	11	33.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.264982036	1.132491018	2	3.587052632	1.793526316	2	NA	NA	1	NA	NA	1	4	NA	1	1	7.37E-28	1	8.54E-18	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	194040423	A	T	-	-	-	-	-	-	21	0	0	47	19	40.4	20	5	25	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	2.016774451	1.008387226	2	2.942982456	0.980994152	3	NA	NA	0	NA	NA	1	4	NA	1	1	1.16E-31	1	4.55E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	194095680	A	G	-	-	-	-	-	-	43	0	0	52	10	19.2	38	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.150467066	1.150467066	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	1.28E-13	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	194117119	G	A	-	-	-	-	-	-	49	0	0	60	17	28.3	37	8	21.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.695740519	0.847870259	2	2.326736842	1.163368421	2	NA	NA	1	NA	NA	1	4	NA	1	1	2.41E-25	1	1.33E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	194247570	G	A	-	-	-	-	-	-	32	0	0	33	7	21.2	41	4	9.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.058307385	1.058307385	1	1.153649123	1.153649123	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.98E-10	1	0.0000546	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	194304409	A	C	-	-	-	-	-	-	60	0	0	51	7	13.7	29	2	6.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.820906188	0.820906188	1	0.743263158	0.743263158	1	NA	NA	1	NA	NA	1	4	NA	1	1	7.46E-09	1	0.009279585	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	194598809	G	A	-	-	-	-	-	-	56	0	0	59	8	13.6	27	1	3.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.814914172	0.814914172	1	0.398561404	0.398561404	1	NA	NA	1	NA	NA	1	4	NA	1	1	6.90E-10	1	0.126579904	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	194674212	A	C	-	-	-	-	-	-	50	0	0	45	11	24.4	37	10	27	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.462051896	1.462051896	1	2.908421053	1.454210526	2	NA	NA	1	NA	NA	1	4	NA	1	1	4.24E-16	1	3.01E-15	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	194815712	G	A	C3orf21	CCDS43188.1	r.?	-	-	intronic	22	0	0	43	24	55.8	31	6	19.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	2.78554491	1.392772455	2	2.283754386	1.141877193	2	NA	NA	0	NA	NA	1	4	NA	1	1	4.35E-44	1	1.03E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	57860634	T	C	-	-	-	-	-	-	41	0	0	35	10	28.6	34	4	11.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.332612953	4.32434803	1	2	1	2	0.667387047	0.67565197	2	3	1	2	0.332612953	0.32434803	1.236843871	1.236843871	1	1.309360787	1.309360787	1	NA	NA	0	NA	NA	0	4	NA	1	1	1.60E-15	1	0.0000257	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	195029113	C	T	-	-	-	-	-	-	44	0	0	59	18	30.5	39	5	12.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.82756487	0.913782435	2	1.378807018	1.378807018	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.03E-27	1	0.00000156	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	68295240	A	G	-	-	-	-	-	-	38	0	0	15	5	33.3	32	6	18.8	0	0	NA	2	0	0	0	0	NA	1	TRUE	FALSE	3	2.566189755	2	1	1	1	1	0.433810245	NA	2	NA	1	NA	0.566189755	1.662341317	1.662341317	1	1.755566481	1.755566481	1	0	0	1	NA	NA	0	4	NA	1	1	0.000000009	1	1.27E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	195176561	G	T	-	-	-	-	-	-	46	0	0	38	7	18.4	31	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.102530938	1.102530938	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	8.61E-10	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	195176571	G	T	-	-	-	-	-	-	47	0	0	43	7	16.3	32	1	3.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.976698603	0.976698603	1	0.333929825	0.333929825	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.15E-09	1	0.14819814	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	195356142	T	A	-	-	-	-	-	-	65	0	0	47	12	25.5	37	6	16.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.527964072	1.527964072	1	1.745052632	1.745052632	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.09E-17	1	3.18E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	195363071	C	G	-	-	-	-	-	-	56	0	0	62	18	29	41	11	26.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.737684631	0.868842315	2	2.886877193	1.443438596	2	NA	NA	1	NA	NA	1	4	NA	1	1	5.72E-27	1	1.34E-16	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	195435616	T	C	-	-	-	-	-	-	39	0	0	53	12	22.6	44	5	11.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.354195609	1.354195609	1	1.228	1.228	1	NA	NA	1	NA	NA	1	4	NA	1	1	5.39E-17	1	0.00000288	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	195464663	G	C	MUC20	ENST00000381954	r.?	-	-	downstream	43	0	0	49	14	28.6	27	3	11.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.427716567	1.427716567	1	1.306684211	1.306684211	1	NA	NA	0	NA	NA	1	4	NA	1	1	3.50E-21	1	0.000334187	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	22838814	T	C	-	-	-	-	-	-	51	0	0	53	20	37.7	41	2	4.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5.338372568	4.32434803	3	2	2	2	0.661627432	0.67565197	4	3	2	2	0.338372568	0.32434803	2.763556478	0.921185493	3	0.543717615	0.543717615	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.65E-32	1	0.018015855	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	195540066	A	T	-	-	-	-	-	-	52	0	0	61	15	24.6	38	4	10.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.474035928	1.474035928	1	1.131052632	1.131052632	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.73E-21	1	0.0000403	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	195601544	C	A	-	-	-	-	-	-	58	0	0	53	6	11.3	42	1	2.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.677097804	0.677097804	1	0.258526316	0.258526316	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.000000293	1	0.189842622	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	195601573	C	G	-	-	-	-	-	-	56	0	0	54	6	11.1	41	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.665113772	0.665113772	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.000000329	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	195981145	G	A	-	-	-	-	-	-	65	0	0	43	14	32.6	47	15	31.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.953397206	0.976698603	2	3.436245614	1.718122807	2	NA	NA	1	NA	NA	1	4	NA	1	1	4.18E-22	1	1.97E-23	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	196000077	C	T	-	-	-	-	-	-	44	0	0	48	10	20.8	27	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.246339321	1.246339321	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	5.37E-14	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	196233956	G	C	C3orf43	CCDS43192.1	r.1604c>g	c.?	p.?	3'UTR variant	56	0	0	49	14	28.6	31	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.427716567	1.427716567	1	0	0	1	NA	NA	0	NA	NA	1	4	NA	1	1	3.50E-21	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	196234035	C	G	C3orf43	CCDS43192.1	r.1525g>c	c.?	p.?	3'UTR variant	50	0	0	47	19	40.4	42	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	2.016774451	1.008387226	2	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	1.16E-31	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	196444512	A	C	PIGX	CCDS3320.1	r.?	-	-	intronic	59	0	0	38	4	10.5	40	9	22.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	0.524161677	0.524161677	1	2.648684211	0.882894737	3	NA	NA	0	NA	NA	1	4	NA	1	1	0.0000403	1	4.64E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	196548538	T	G	SLC39A10	CCDS33353.1	r.1399u>g	c.1124T>G	p.L375R	missense	63	0	0	48	15	31.2	34	7	20.6	152	0	0	515	178	34.6	428	86	20.1	2.89E-82	TRUE	TRUE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.869508982	0.934754491	2	2.219017544	1.109508772	2	2.073237525	1.036618762	2	2.165157895	1.082578947	2	4	3	1	1	2.86E-23	2.81E-268	3.73E-10	2.05E-107	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	2	196705438	C	T	DNAH7	CCDS42794.1	r.?	-	-	intronic	55	0	0	49	19	38.8	34	8	23.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.324902196	1.162451098	2	2.531403509	1.265701754	2	NA	NA	1	NA	NA	1	4	NA	1	1	3.12E-31	1	6.32E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	196720287	G	A	-	-	-	-	-	-	33	0	0	48	5	10.4	38	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	0.519169661	0.519169661	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	0.00000447	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	196901147	C	G	CFHR2	ENST00000367421	r.?	-	-	intronic	56	0	0	51	21	41.2	35	3	8.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.468710579	1.234355289	2	0.926385965	0.926385965	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.73E-35	1	0.000725791	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	197132257	T	A	ZBTB41	CCDS30960.1	r.?	-	-	intronic	45	0	0	38	7	18.4	30	1	3.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.102530938	1.102530938	1	0.355473684	0.355473684	1	NA	NA	1	NA	NA	1	4	NA	1	1	8.61E-10	1	0.139615808	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	197144925	T	A	-	-	-	-	-	-	51	0	0	48	24	50	27	4	14.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	2.496007984	1.248003992	2	1.742245614	1.742245614	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.71E-42	1	0.00001	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	197158847	T	C	-	-	-	-	-	-	46	0	0	60	13	21.7	40	5	12.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.083267465	1.083267465	1	1.471491228	1.471491228	1	NA	NA	0	NA	NA	1	4	NA	1	1	5.07E-18	1	0.00000178	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	197191032	G	A	HECW2	CCDS33354.1	r.?	-	-	intronic	43	0	0	38	7	18.4	35	6	17.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.102530938	1.102530938	1	1.842	1.842	1	NA	NA	1	NA	NA	1	4	NA	1	1	8.61E-10	1	2.24E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	197226040	G	A	-	-	-	-	-	-	9	0	0	28	4	14.3	6	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	0.713858283	0.713858283	1	0	0	1	NA	NA	0	NA	NA	1	4	NA	1	1	0.0000116	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	197317444	T	A	-	-	-	-	-	-	30	0	0	47	6	12.8	27	3	11.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	0.638978044	0.638978044	1	1.306684211	1.306684211	1	NA	NA	0	NA	NA	1	4	NA	1	1	0.000000141	1	0.000334187	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	197447467	G	A	MIR922	CCDS46987.1	r.?	-	-	intronic	32	0	0	45	11	24.4	28	5	17.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	1.218051896	1.218051896	1	2.107175439	2.107175439	1	NA	NA	0	NA	NA	1	4	NA	1	1	4.24E-16	1	0.000000279	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	197525769	G	A	DENND1B	CCDS44289.1	r.?	-	-	intronic	46	0	0	100	9	9	56	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	8.663585187	4	6	2	2	2	0.336414813	1	6	NA	3	NA	0.663585187	NA	0.959004104	0.959004104	1	0	NA	0	NA	NA	0	NA	NA	0	NA	NA	1	1	2.47E-09	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	198008015	C	T	ANKRD44	CCDS33355.1	r.?	-	-	intronic	36	0	0	24	9	37.5	35	2	5.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	4	4	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.997005988	0.999001996	3	0.614	0.614	1	NA	NA	1	NA	NA	0	4	NA	1	1	2.39E-15	1	0.013332991	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	198198438	T	G	-	-	-	-	-	-	46	0	0	72	17	23.6	39	6	15.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	4	4	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.886115768	0.943057884	2	1.658877193	1.658877193	1	NA	NA	1	NA	NA	0	4	NA	1	1	7.97E-24	1	4.43E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	198447628	C	T	RFTN2	CCDS2323.1	r.?	-	-	intronic	45	0	0	55	19	34.5	33	9	27.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.067245509	1.033622754	2	2.940736842	1.470368421	2	NA	NA	1	NA	NA	1	4	NA	1	1	4.51E-30	1	6.76E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	198601157	G	T	-	-	-	-	-	-	45	0	0	54	6	11.1	36	4	11.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.665113772	0.665113772	1	1.195684211	1.195684211	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.000000329	1	0.0000324	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	29344724	G	A	IL1RAPL1	CCDS14218.1	r.?	-	-	intronic	55	0	0	60	6	10	40	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	5	4.32434803	4	2	1	2	1	0.67565197	NA	3	NA	2	NA	0.32434803	0.699201597	0.699201597	1	0	NA	0	NA	NA	0	NA	NA	0	NA	NA	1	1	0.000000621	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	198757144	C	T	PLCL1	ENST00000428675	r.?	-	-	intronic	48	0	0	51	9	17.6	28	2	7.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.05459481	1.05459481	1	0.764807018	0.764807018	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.92E-12	1	0.008668191	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	198959648	G	A	PLCL1	CCDS2326.1	r.?	-	-	intronic	63	0	0	59	7	11.9	33	2	6.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.7130499	0.7130499	1	0.657087719	0.657087719	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.12E-08	1	0.011909843	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	199233411	G	T	-	-	-	-	-	-	68	0	0	58	7	12.1	35	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.725033932	0.725033932	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	1.88E-08	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	199349830	T	C	-	-	-	-	-	-	57	0	0	64	23	35.9	48	7	14.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.151133733	1.075566866	2	1.572701754	1.572701754	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.44E-36	1	4.81E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	199458976	G	T	-	-	-	-	-	-	51	0	0	48	5	10.4	37	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.623169661	0.623169661	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.00000447	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	200215460	G	A	SATB2	CCDS2327.1	r.?	-	-	intronic	34	0	0	42	8	19	29	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.138483034	1.138483034	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	3.96E-11	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	200287354	C	T	-	-	-	-	-	-	34	0	0	33	11	33.3	30	5	16.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.995341317	0.997670659	2	1.798912281	1.798912281	1	NA	NA	1	NA	NA	1	4	NA	1	1	8.54E-18	1	0.000000401	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	200796298	A	G	C2orf60	CCDS42795.1	r.2706u>c	c.?	p.?	3'UTR variant	49	0	0	46	8	17.4	30	7	23.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.042610778	1.042610778	1	2.509859649	1.254929825	2	NA	NA	1	NA	NA	1	4	NA	1	1	8.61E-11	1	1.44E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	201027035	A	T	CACNA1S	CCDS1407.1	r.?	-	-	intronic	35	0	0	63	23	36.5	34	6	17.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.187085828	1.093542914	2	1.895859649	1.895859649	1	NA	NA	1	NA	NA	1	4	NA	1	1	9.25E-37	1	1.86E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	201212754	C	G	-	-	-	-	-	-	58	0	0	58	9	15.5	40	5	12.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.928762475	0.928762475	1	1.346491228	1.346491228	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.67E-11	1	0.00000178	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	201858117	A	G	FAM126B	CCDS2335.1	r.?	-	-	intronic	31	0	0	30	10	33.3	19	4	21.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.995341317	0.997670659	2	2.272877193	2.272877193	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.68E-16	1	0.00000228	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	76358498	G	A	-	-	-	-	-	-	24	0	0	13	5	38.5	16	3	18.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1.38822692	1.304475247	1	1	0	0	0.61177308	0.695524753	2	2	0	0	0.38822692	0.304475247	1.301393512	1.301393512	1	1.518364153	1.518364153	1	NA	NA	1	NA	NA	0	4	NA	1	1	3.89E-09	1	0.0000667	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	202370789	A	G	PPP1R12B	CCDS30973.1	r.?	-	-	intronic	50	0	0	41	17	41.5	38	8	21.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.486686627	1.243343313	2	2.272877193	1.136438596	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.03E-28	1	1.67E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	202449164	G	A	ALS2CR11	CCDS2349.1	r.?	-	-	intronic	48	0	0	70	15	21.4	35	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.282291417	1.282291417	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	1.70E-20	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	202465155	G	A	ALS2CR11	CCDS2349.1	r.?	-	-	intronic	42	0	0	23	8	34.8	18	3	16.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.085221557	1.042610778	2	1.798912281	1.798912281	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.79E-13	1	0.0000964	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	202623722	G	A	ALS2	CCDS42800.1	r.?	-	-	intronic	61	0	0	52	10	19.2	37	9	24.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.150467066	1.150467066	1	2.617578947	1.308789474	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.28E-13	1	2.14E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	76195950	T	C	-	-	-	-	-	-	39	0	0	22	6	27.3	29	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1.38822692	1.304475247	1	1	0	0	0.61177308	0.695524753	2	2	0	0	0.38822692	0.304475247	0.922806309	0.922806309	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	1.09E-09	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	203074894	A	G	ADORA1	CCDS1434.1	r.?	-	-	intronic	46	0	0	40	10	25	32	4	12.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.498003992	1.498003992	1	1.346491228	1.346491228	1	NA	NA	1	NA	NA	1	4	NA	1	1	7.22E-15	1	0.0000201	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	203266019	G	A	-	-	-	-	-	-	23	0	0	51	17	33.3	23	5	21.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.995341317	0.997670659	2	2.337508772	1.168754386	2	NA	NA	1	NA	NA	1	4	NA	1	1	9.59E-27	1	9.75E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	203735014	T	A	LAX1	CCDS44297.1	r.?	-	-	intronic	42	0	0	39	4	10.3	34	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.617177645	0.617177645	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.0000447	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	76456730	G	C	-	-	-	-	-	-	47	0	0	30	15	50	31	8	25.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1.38822692	1.304475247	1	1	0	0	0.61177308	0.695524753	2	2	0	0	0.38822692	0.304475247	1.690121444	1.217467706	1.38822692	2.083712508	1.597356878	1.304475247	NA	NA	1	NA	NA	1	4	NA	1	1	4.41E-27	1	2.78E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	204436109	G	T	-	-	-	-	-	-	44	0	0	38	19	50	36	6	16.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.996007984	1.498003992	2	1.798912281	1.798912281	1	NA	NA	1	NA	NA	1	4	NA	1	1	6.16E-34	1	2.68E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	204575079	C	A	MDM4	ENST00000391947	r.?	-	-	intronic	32	0	0	49	15	30.6	21	3	14.3	1	0	0	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.833556886	0.916778443	2	1.540385965	1.540385965	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.10E-23	1	0.000155401	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	204725247	C	T	-	-	-	-	-	-	34	0	0	47	16	34	40	8	20	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.037285429	1.018642715	2	2.154385965	1.077192982	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.98E-25	1	2.61E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	204805838	G	A	NFASC	CCDS30982.1	r.?	-	-	intronic	50	0	0	35	7	20	31	1	3.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.198403194	1.198403194	1	0.344701754	0.344701754	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.65E-10	1	0.143917729	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	204841033	G	A	-	-	-	-	-	-	34	0	0	55	9	16.4	39	6	15.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.982690619	0.982690619	1	1.658877193	1.658877193	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.01E-11	1	4.43E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	205251856	G	A	-	-	-	-	-	-	44	0	0	47	19	40.4	32	6	18.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.420774451	1.210387226	2	2.025122807	2.025122807	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.16E-31	1	1.27E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	84946367	A	T	-	-	-	-	-	-	57	0	0	31	13	41.9	43	7	16.3	0	0	NA	1	0	0	1	0	0	1	TRUE	FALSE	1	1.304475247	1	1	0	0	1	0.695524753	NA	2	NA	0	NA	0.304475247	1.253654691	1.253654691	1	1.316454027	1.316454027	1	0	NA	0	0	0	1	4	NA	1	1	2.32E-22	1	2.15E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	205884052	T	C	PARD3B	CCDS42806.1	r.?	-	-	intronic	67	0	0	52	5	9.6	42	3	7.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.575233533	0.575233533	1	0.764807018	0.764807018	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.00000668	1	0.001240292	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	206449746	A	G	PARD3B	CCDS42806.1	r.?	-	-	intronic	38	0	0	41	6	14.6	29	0	0	0	0	NA	0	0	NA	1	0	0	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.874834331	0.874834331	1	0	0	1	NA	NA	1	0	0	1	3	NA	1	1	6.05E-08	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	206520930	C	A	-	-	-	-	-	-	41	0	0	49	19	38.8	34	6	17.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.324902196	1.162451098	2	1.895859649	1.895859649	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.12E-31	1	1.86E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	85925063	G	T	DACH2	CCDS48140.1	r.?	-	-	intronic	47	0	0	27	13	48.1	34	11	32.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1	1.304475247	1	1	0	0	1	0.695524753	NA	2	NA	0	NA	0.304475247	1.439159681	1.439159681	1	2.616755243	2.005983056	1.304475247	NA	NA	1	NA	NA	0	4	NA	1	1	2.29E-23	1	1.26E-17	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	207090295	G	A	-	-	-	-	-	-	36	0	0	49	13	26.5	39	6	15.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.587884232	0.793942116	2	1.658877193	1.658877193	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.71E-19	1	4.43E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	87216337	A	C	-	-	-	-	-	-	47	0	0	41	16	39	27	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1.539412018	3	1	2	0	1	0.460587982	1	1	NA	1	NA	0.539412018	NA	1.377256915	1.377256915	1	0	0	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.40E-26	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	208292650	G	T	-	-	-	-	-	-	27	0	0	47	7	14.9	32	2	6.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.892810379	0.892810379	1	0.667859649	0.667859649	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.12E-09	1	0.011224977	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	208620902	G	A	CCNYL1	CCDS46503.1	r.?	-	-	downstream	48	0	0	42	8	19	33	9	27.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.138483034	1.138483034	1	2.940736842	1.470368421	2	NA	NA	1	NA	NA	1	4	NA	1	1	3.96E-11	1	6.76E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	89992775	G	T	-	-	-	-	-	-	33	0	0	24	11	45.8	21	2	9.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1.348276567	3	1	2	0	1	0.651723433	1	2	NA	0	NA	0.348276567	NA	1.529853981	1.529853981	1	0.928333333	0.928333333	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.15E-19	1	0.004928472	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	209185068	A	G	-	-	-	-	-	-	30	0	0	40	4	10	33	0	0	0	0	NA	0	0	NA	2	0	0	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.599201597	0.599201597	1	0	0	1	NA	NA	1	0	0	1	3	NA	1	1	0.0000495	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	209362806	G	A	-	-	-	-	-	-	53	0	0	46	9	19.6	49	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.17443513	1.17443513	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	1.82E-12	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	209462076	G	T	-	-	-	-	-	-	34	0	0	45	8	17.8	28	3	10.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.066578842	1.066578842	1	1.152596491	1.152596491	1	NA	NA	1	NA	NA	1	4	NA	1	1	7.14E-11	1	0.000372895	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	209876711	G	A	HSD11B1	CCDS1489.1	r.?	-	-	intronic	55	0	0	55	16	29.1	41	7	17.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.743676647	0.871838323	2	1.842	1.842	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.78E-24	1	1.51E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	209895859	G	T	HSD11B1	CCDS1489.1	r.?	-	-	intronic	31	0	0	62	19	30.6	40	3	7.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.833556886	0.916778443	2	0.807894737	0.807894737	1	NA	NA	1	NA	NA	1	4	NA	1	1	6.66E-29	1	0.001075403	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	95418293	C	A	-	-	-	-	-	-	57	0	0	27	5	18.5	38	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1	3	1	2	0	1	1	1	NA	NA	NA	NA	NA	NA	0.553522954	0.553522954	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	0.00000023	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	101942029	A	C	-	-	-	-	-	-	43	0	0	34	6	17.6	28	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.46673429	3	1	2	1	1	0.53326571	1	2	NA	1	NA	0.46673429	NA	0.784740045	0.784740045	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	1.86E-08	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	210809867	A	C	UNC80	CCDS46504.1	r.7025a>c	c.6945A>C	p.L2315F	missense	45	0	0	40	10	25	33	8	24.2	198	0	0	370	68	18.4	296	36	12.2	2.13E-27	TRUE	TRUE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.498003992	1.498003992	1	2.606807018	1.303403509	2	1.102530938	1.102530938	1	1.314175439	1.314175439	1	4	3	1	1	7.22E-15	1.87E-82	4.85E-12	1.11E-37	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	2	210901728	C	A	C2orf67	CCDS33370.1	r.?	-	-	intronic	35	0	0	53	15	28.3	42	5	11.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.695740519	0.847870259	2	1.281859649	1.281859649	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.60E-22	1	0.00000228	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	96672286	G	T	DIAPH2	CCDS14467.1	r.?	-	-	intronic	47	0	0	32	13	40.6	34	9	26.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1	3	1	2	0	1	1	1	NA	NA	NA	NA	NA	NA	1.214758483	1.214758483	1	2.589561404	1.294780702	2	NA	NA	0	NA	NA	1	4	NA	1	1	3.88E-22	1	9.15E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	211202485	C	A	-	-	-	-	-	-	30	0	0	52	5	9.6	32	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.575233533	0.575233533	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.00000668	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	211421103	T	C	-	-	-	-	-	-	50	0	0	45	15	33.3	35	5	14.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.995341317	0.997670659	2	1.540385965	1.540385965	1	NA	NA	1	NA	NA	1	4	NA	1	1	9.14E-24	1	0.000000895	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	211431680	G	T	RCOR3	CCDS44312.1	r.?	-	-	upstream	35	0	0	45	4	8.9	32	2	6.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.533289421	0.533289421	1	0.667859649	0.667859649	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.0000791	1	0.011224977	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	211711014	G	T	-	-	-	-	-	-	54	0	0	60	7	11.7	36	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.701065868	0.701065868	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	2.39E-08	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	211721039	G	C	-	-	-	-	-	-	48	0	0	53	12	22.6	33	6	18.2	0	0	NA	2	0	0	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.354195609	1.354195609	1	1.960491228	1.960491228	1	0	0	1	NA	NA	1	4	NA	1	1	5.39E-17	1	1.54E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	212083871	T	A	-	-	-	-	-	-	43	0	0	53	14	26.4	35	5	14.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.581892216	0.790946108	2	1.540385965	1.540385965	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.22E-20	1	0.000000895	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	212445262	C	T	ERBB4	CCDS2394.1	r.?	-	-	intronic	45	0	0	27	11	40.7	15	2	13.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.438750499	1.21937525	2	1.432666667	1.432666667	1	NA	NA	1	NA	NA	1	4	NA	1	1	5.92E-19	1	0.002513772	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	212953505	A	C	NSL1	CCDS1509.1	r.?	-	-	intronic	26	0	0	27	6	22.2	12	3	25	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.330227545	1.330227545	1	2.692982456	2.692982456	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.23E-09	1	0.0000266	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	213511187	C	T	-	-	-	-	-	-	58	0	0	52	18	34.6	33	8	24.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.073237525	1.036618762	2	2.606807018	1.303403509	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.39E-28	1	4.85E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	214382888	A	T	-	-	-	-	-	-	37	0	0	51	13	25.5	34	3	8.8	0	0	NA	0	0	NA	1	0	0	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.527964072	1.527964072	1	0.947929825	0.947929825	1	NA	NA	1	0	0	1	4	NA	1	1	4.87E-19	1	0.000666058	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	214759499	G	A	SPAG16	CCDS2396.1	r.?	-	-	intronic	49	0	0	51	8	15.7	40	1	2.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.940746507	0.940746507	1	0.269298246	0.269298246	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.05E-10	1	0.181679879	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	214906206	C	T	-	-	-	-	-	-	61	0	0	43	7	16.3	36	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.976698603	0.976698603	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	2.15E-09	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	214956196	A	T	SPAG16	CCDS2396.1	r.?	-	-	intronic	54	0	0	33	9	27.3	33	1	3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.635820359	1.635820359	1	0.323157895	0.323157895	1	NA	NA	1	NA	NA	1	4	NA	1	1	6.76E-14	1	0.15245715	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	216349317	G	T	USH2A	CCDS31025.1	r.?	-	-	intronic	35	0	0	50	14	28	33	3	9.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.677764471	0.838882236	2	0.980245614	0.980245614	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.84E-21	1	0.000609557	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	103826916	T	C	IL1RAPL2	CCDS14517.1	r.?	-	-	intronic	46	0	0	29	15	51.7	21	5	23.8	1	0	0	0	0	NA	0	0	NA	1	TRUE	FALSE	1.474974183	2	1	2	0	0	0.525025817	1	2	NA	0	NA	0.474974183	NA	1.792433908	1.215230699	1.474974183	2.087719298	2.087719298	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.22E-27	1	5.95E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	217113272	G	C	ESRRG	CCDS1517.1	r.?	-	-	intronic	51	0	0	47	9	19.1	37	9	24.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.14447505	1.14447505	1	2.617578947	1.308789474	2	NA	NA	1	NA	NA	1	4	NA	1	1	2.24E-12	1	2.14E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	217390388	G	A	RPL37A	ENST00000446558	r.?	-	-	intronic	49	0	0	53	5	9.4	42	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.563249501	0.563249501	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.00000734	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	217451860	T	C	-	-	-	-	-	-	56	0	0	61	20	32.8	56	11	19.6	0	0	NA	2	0	0	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.965381238	0.982690619	2	2.111298246	1.055649123	2	0	0	1	NA	NA	1	4	NA	1	1	4.89E-31	1	5.91E-15	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	217957410	A	T	SPATA17	CCDS1519.1	r.?	-	-	intronic	48	0	0	52	16	30.8	37	7	18.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.845540918	0.922770459	2	2.035894737	1.017947368	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.33E-24	1	7.05E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	218712374	C	T	TNS1	CCDS2407.1	r.2944g>a	c.2491G>A	p.G831R	missense	21	0	0	61	17	27.9	36	9	25	177	2	1.1	54	16	29.6	48	20	41.7	1.28E-27	TRUE	TRUE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.671772455	0.835886228	2	2.692982456	1.346491228	2	1.773636727	0.886818363	2	4.491894737	2.245947368	2	4	3	1	0.22192751	3.33E-25	2.69E-24	1.63E-13	1.40E-33	YES	1_1	1_1	somatic	custom.pulldown.HiSeq
PD9852b	X	110703697	C	A	-	-	-	-	-	-	65	0	0	24	9	37.5	25	5	20	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1.474974183	2	1	2	0	0	0.525025817	1	2	NA	0	NA	0.474974183	NA	1.300121307	1.300121307	1	1.754385965	1.754385965	1	NA	NA	0	NA	NA	1	4	NA	1	1	2.39E-15	1	0.000000153	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	218818596	C	T	-	-	-	-	-	-	59	0	0	47	16	34	34	9	26.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.037285429	1.018642715	2	2.854561404	1.427280702	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.98E-25	1	9.15E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	219034439	C	T	CXCR1	CCDS2409.1	r.?	-	-	upstream	61	0	0	50	12	24	37	8	21.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.438083832	1.438083832	1	2.326736842	1.163368421	2	NA	NA	1	NA	NA	1	4	NA	1	1	2.49E-17	1	1.33E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	219095673	G	C	ARPC2	CCDS2410.1	r.?	-	-	intronic	47	0	0	32	5	15.6	45	7	15.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.934754491	0.934754491	1	1.680421053	1.680421053	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.000000562	1	0.000000003	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	219158339	C	G	PNKD	CCDS2411.1	r.?	-	-	intronic	24	0	0	41	10	24.4	17	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.462051896	1.462051896	1	0	0	1	NA	NA	1	NA	NA	1	4	NA	1	1	9.51E-15	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	219496491	G	A	PLCD4	CCDS46516.1	r.?	-	-	intronic	26	0	0	40	12	30	30	5	16.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.79760479	0.898802395	2	1.798912281	1.798912281	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.20E-18	1	0.000000401	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	219807295	T	C	-	-	-	-	-	-	54	0	0	43	14	32.6	28	5	17.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.953397206	0.976698603	2	1.928175439	1.928175439	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.18E-22	1	0.000000279	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	220179893	A	C	EPRS	CCDS31027.1	r.?	-	-	intronic	42	0	0	40	13	32.5	38	7	18.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.94740519	0.973702595	2	1.982035088	0.991017544	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.30E-20	1	8.61E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	220214920	C	G	EPRS	CCDS31027.1	r.?	-	-	intronic	35	0	0	47	13	27.7	36	7	19.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.659788423	0.829894212	2	2.089754386	1.044877193	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.47E-19	1	5.74E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	220552759	G	C	-	-	-	-	-	-	23	0	0	42	15	35.7	22	5	22.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.139149701	1.06957485	2	2.44522807	1.222614035	2	NA	NA	1	NA	NA	1	4	NA	1	1	2.65E-24	1	7.67E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	121400883	C	T	-	-	-	-	-	-	32	0	0	45	33	73.3	27	10	37	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.402297358	3.60351971	4	3	0	0	0.597702642	0.39648029	5	4	0	0	0.402297358	0.60351971	4.687031668	1.064678573	4.402297358	3.838916328	1.065324082	3.60351971	NA	NA	0	NA	NA	0	4	NA	1	1	3.16E-66	1	7.62E-17	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	220802104	A	G	-	-	-	-	-	-	13	0	0	13	3	23.1	4	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.384155689	1.384155689	1	0	0	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.0000344	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	221140835	C	A	-	-	-	-	-	-	40	0	0	34	4	11.8	32	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.707057884	0.707057884	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.0000257	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	221431803	A	T	-	-	-	-	-	-	49	0	0	38	4	10.5	30	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.629161677	0.629161677	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.0000403	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	222452957	G	C	-	-	-	-	-	-	43	0	0	45	17	37.8	24	4	16.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.264982036	1.132491018	2	1.798912281	1.798912281	1	NA	NA	1	NA	NA	1	4	NA	1	1	7.37E-28	1	0.00000613	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	222472975	G	T	-	-	-	-	-	-	41	0	0	45	13	28.9	35	4	11.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.731692615	0.865846307	2	1.228	1.228	1	NA	NA	1	NA	NA	1	4	NA	1	1	7.68E-20	1	0.0000289	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	222646801	G	T	-	-	-	-	-	-	21	0	0	64	11	17.2	17	2	11.8	26	0	0	3	1	33.3	8	0	0	1	TRUE	TRUE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.030626747	1.030626747	1	1.271087719	1.271087719	1	1.995341317	1.995341317	1	0	0	1	4	3	1	1	2.85E-14	0.014925125	0.003234386	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	122432870	G	A	GRIA3	ENST00000264357	r.?	-	-	intronic	47	0	0	44	7	15.9	29	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	4.402297358	3.60351971	4	3	0	0	0.597702642	0.39648029	5	4	0	0	0.402297358	0.60351971	1.016695819	1.016695819	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	2.55E-09	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	223140858	C	T	PAX3	CCDS42826.1	r.?	-	-	intronic	33	0	0	53	5	9.4	31	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.563249501	0.563249501	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.00000734	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	122876649	G	T	-	-	-	-	-	-	40	0	0	45	29	64.4	37	14	37.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.402297358	3.60351971	4	3	0	0	0.597702642	0.39648029	5	4	0	0	0.402297358	0.60351971	4.117937782	1.029484445	4	3.921919924	1.088358116	3.60351971	NA	NA	1	NA	NA	0	4	NA	1	1	1.11E-55	1	3.35E-23	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	223225672	C	A	-	-	-	-	-	-	23	0	0	39	14	35.9	38	8	21.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.151133733	1.075566866	2	2.272877193	1.136438596	2	NA	NA	1	NA	NA	1	4	NA	1	1	8.19E-23	1	1.67E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	124660273	G	A	-	-	-	-	-	-	46	0	0	48	33	68.8	35	10	28.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.402297358	3.60351971	4	3	0	0	0.597702642	0.39648029	5	4	0	0	0.402297358	0.60351971	4.399287568	0.999316314	4.402297358	2.967378567	0.989126189	3	NA	NA	1	NA	NA	0	4	NA	1	1	1.18E-64	1	1.60E-15	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	224061220	C	A	-	-	-	-	-	-	39	0	0	42	12	28.6	27	4	14.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.713716567	0.856858283	2	1.594245614	1.594245614	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.35E-18	1	0.00001	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	224700057	C	T	AP1S3	CCDS42827.1	r.?	-	-	intronic	32	0	0	46	12	26.1	47	2	4.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.041916168	1.041916168	1	0.377192982	0.377192982	1	NA	NA	1	NA	NA	1	4	NA	1	1	8.12E-18	1	0.02328732	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	224878149	C	T	CNIH3	CCDS1544.1	r.?	-	-	intronic	45	0	0	55	7	12.7	29	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.760986028	0.760986028	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	1.28E-08	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	153602941	C	A	FLNA	CCDS48194.1	r.54g>u	c.?	p.?	5'UTR variant	12	0	0	40	31	77.5	4	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	4.402297358	3.60351971	4	3	0	0	0.597702642	0.39648029	5	4	0	0	0.402297358	0.60351971	4.955592828	1.125683348	4.402297358	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	1.22E-63	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	225281674	A	G	DNAH14	CCDS44321.1	r.?	-	-	intronic	47	0	0	60	26	43.3	41	5	12.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.594542914	1.297271457	2	1.314175439	1.314175439	1	NA	NA	1	NA	NA	1	4	NA	1	1	8.84E-44	1	0.00000202	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	226008105	A	G	-	-	-	-	-	-	65	0	0	30	19	63.3	38	8	21.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.526946108	1.263473054	2	1.850877193	1.850877193	1	NA	NA	1	NA	NA	1	4	NA	1	1	9.89E-37	1	1.67E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	125150352	G	A	-	-	-	-	-	-	51	0	0	54	40	74.1	28	11	39.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.402297358	3.60351971	4	3	0	0	0.597702642	0.39648029	5	4	0	0	0.402297358	0.60351971	4.738186174	1.07629853	4.402297358	4.077551667	1.131546931	3.60351971	NA	NA	0	NA	NA	0	4	NA	1	1	2.76E-80	1	9.70E-19	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	226500778	G	T	KIAA1486	CCDS46529.1	r.?	-	-	intronic	60	0	0	29	4	13.8	39	0	0	3	0	0	0	0	NA	2	0	0	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.550898204	0.550898204	1	0	0	1	NA	NA	1	0	0	1	3	NA	1	1	0.0000134	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	226672286	C	G	-	-	-	-	-	-	43	0	0	37	4	10.8	30	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.431137725	0.431137725	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	0.0000362	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	226894597	G	A	ITPKB	CCDS1555.1	r.?	-	-	intronic	23	0	0	33	8	24.2	26	4	15.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.450067864	1.450067864	1	1.658877193	1.658877193	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.85E-12	1	0.00000856	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	227090417	G	C	-	-	-	-	-	-	16	0	0	27	13	48.1	34	8	23.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.920159681	0.96007984	2	2.061403509	1.030701754	2	NA	NA	1	NA	NA	1	4	NA	1	1	2.29E-23	1	6.32E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	227142612	G	C	-	-	-	-	-	-	45	0	0	23	5	21.7	31	4	12.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.866267465	0.866267465	1	1.131578947	1.131578947	1	NA	NA	1	NA	NA	1	4	NA	1	1	9.75E-08	1	0.0000177	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	227658826	A	G	-	-	-	-	-	-	42	0	0	63	16	25.4	33	6	18.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.521972056	0.760986028	2	1.960491228	1.960491228	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.48E-23	1	1.54E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	125335591	T	C	-	-	-	-	-	-	63	0	0	74	22	29.7	37	5	13.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.402297358	3.60351971	4	3	0	0	0.597702642	0.39648029	5	4	0	0	0.402297358	0.60351971	1.899111058	0.949555529	2	1.400685687	1.400685687	1	NA	NA	0	NA	NA	0	4	NA	1	1	6.78E-33	1	0.00000119	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	228643903	C	A	HIST3H2A	CCDS1573.1	r.?	-	-	downstream	59	0	0	59	19	32.2	50	9	18	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.929429142	0.964714571	2	1.938947368	0.969473684	2	NA	NA	1	NA	NA	1	4	NA	1	1	2.20E-29	1	4.07E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	229186594	C	T	-	-	-	-	-	-	53	0	0	50	12	24	39	10	25.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.438083832	1.438083832	1	2.757614035	1.378807018	2	NA	NA	1	NA	NA	1	4	NA	1	1	2.49E-17	1	5.44E-15	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	229611269	A	G	NUP133	CCDS1579.1	r.?	-	-	intronic	34	0	0	48	17	35.4	29	6	20.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.121173653	1.060586826	2	2.229789474	1.114894737	2	NA	NA	1	NA	NA	1	4	NA	1	1	2.80E-27	1	6.72E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	229718486	T	C	-	-	-	-	-	-	41	0	0	53	9	17	43	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.018642715	1.018642715	1	0	0	1	NA	NA	1	NA	NA	1	3	NA	1	1	7.10E-12	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	229762815	G	A	URB2	CCDS31052.1	r.?	-	-	intronic	43	0	0	58	22	37.9	37	8	21.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.270974052	1.135487026	2	2.326736842	1.163368421	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.13E-35	1	1.33E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	229950220	G	A	-	-	-	-	-	-	30	0	0	55	15	27.3	31	1	3.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.635820359	0.81791018	2	0.344701754	0.344701754	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.01E-22	1	0.143917729	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	230171785	C	T	-	-	-	-	-	-	43	0	0	47	17	36.2	27	4	14.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.16910978	1.08455489	2	1.594245614	1.594245614	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.81E-27	1	0.00001	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	230203871	T	G	GALNT2	CCDS1582.1	r.?	-	-	intronic	14	0	0	42	4	9.5	8	1	12.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.569241517	0.569241517	1	1.346491228	1.346491228	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.0000601	1	0.039306956	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	230641575	G	T	-	-	-	-	-	-	38	0	0	52	12	23.1	32	7	21.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.384155689	1.384155689	1	2.359052632	1.179526316	2	NA	NA	1	NA	NA	1	4	NA	1	1	4.19E-17	1	2.36E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	230755866	G	C	-	-	-	-	-	-	42	0	0	40	15	37.5	33	3	9.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.247005988	1.123502994	2	0.980245614	0.980245614	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.09E-24	1	0.000609557	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	231183402	C	G	SP140	ENST00000420434	r.?	-	-	intronic	52	0	0	53	33	62.3	46	20	43.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.487025948	1.243512974	2	3.815789474	1.907894737	2	NA	NA	1	NA	NA	1	4	NA	1	1	2.14E-62	1	4.72E-34	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	231493354	T	C	C1orf124	CCDS31054.1	r.?	-	-	downstream	47	1	2.1	50	14	28	27	1	3.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.677764471	0.838882236	2	0.398561404	0.398561404	1	NA	NA	1	NA	NA	1	4	NA	0.209895027	1	4.84E-21	1	0.126579904	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	232724333	A	T	-	-	-	-	-	-	42	0	0	33	15	45.5	35	7	20	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.726367265	1.363183633	2	2.154385965	1.077192982	2	NA	NA	1	NA	NA	1	4	NA	1	1	2.91E-26	1	4.65E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	233078788	C	T	-	-	-	-	-	-	56	0	0	54	5	9.3	27	0	0	0	0	NA	0	0	NA	2	0	0	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.557257485	0.557257485	1	0	0	1	NA	NA	1	0	0	1	3	NA	1	1	0.00000806	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	233932296	G	A	-	-	-	-	-	-	57	0	0	43	17	39.5	39	4	10.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.366846307	1.183423154	2	1.109508772	1.109508772	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.84E-28	1	0.0000447	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	234066287	C	G	SLC35F3	CCDS1600.1	r.?	-	-	intronic	56	0	0	56	18	32.1	33	3	9.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.923437126	0.961718563	2	0.980245614	0.980245614	1	NA	NA	1	NA	NA	1	4	NA	1	1	6.76E-28	1	0.000609557	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	234436602	G	A	SLC35F3	CCDS1600.1	r.?	-	-	intronic	51	0	0	48	12	25	39	5	12.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.498003992	1.498003992	1	1.378807018	1.378807018	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.44E-17	1	0.00000156	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	128151886	A	G	-	-	-	-	-	-	52	0	0	57	10	17.5	41	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	4.402297358	3.60351971	4	3	0	0	0.597702642	0.39648029	5	4	0	0	0.402297358	0.60351971	1.119004832	1.119004832	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	3.40E-13	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	234826065	C	T	-	-	-	-	-	-	43	0	0	53	21	39.6	49	9	18.4	2	0	0	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.372838323	1.186419162	2	1.982035088	0.991017544	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.30E-34	1	3.35E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	236081364	T	A	-	-	-	-	-	-	34	0	0	46	6	13	30	3	10	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.778962076	0.778962076	1	1.077192982	1.077192982	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.000000123	1	0.000458697	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	236885640	G	A	ACTN2	CCDS1613.1	r.?	-	-	intronic	28	0	0	45	15	33.3	36	12	33.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.995341317	0.997670659	2	3.587052632	1.793526316	2	NA	NA	1	NA	NA	1	4	NA	1	1	9.14E-24	1	2.73E-19	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	237143733	G	A	-	-	-	-	-	-	33	0	0	48	20	41.7	27	5	18.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.498670659	1.249335329	2	1.992807018	1.992807018	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.40E-33	1	0.00000023	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	237268023	T	G	RYR2	ENST00000366574	r.?	-	-	intronic	45	0	0	31	12	38.7	32	9	28.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.31891018	1.15945509	2	3.026912281	1.51345614	2	NA	NA	1	NA	NA	1	4	NA	1	1	3.16E-20	1	4.94E-14	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	237379765	C	T	RYR2	ENST00000366574	r.?	-	-	intronic	39	0	0	49	19	38.8	37	3	8.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.324902196	1.162451098	2	0.872526316	0.872526316	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.12E-31	1	0.000855237	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	237522319	T	C	RYR2	ENST00000366574	r.?	-	-	intronic	36	0	0	49	16	32.7	45	2	4.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.959389222	0.979694611	2	0.473964912	0.473964912	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.37E-25	1	0.021467209	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	238071925	T	G	-	-	-	-	-	-	58	0	0	49	10	20.4	43	3	7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.222371257	1.222371257	1	0.754035088	0.754035088	1	NA	NA	1	NA	NA	1	4	NA	1	1	6.72E-14	1	0.001328364	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	131907510	C	G	HS6ST2	CCDS48169.1	r.?	-	-	intronic	59	0	0	40	8	20	22	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	4.402297358	3.60351971	4	3	0	0	0.597702642	0.39648029	5	4	0	0	0.402297358	0.60351971	1.278862665	1.278862665	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	2.61E-11	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	238185138	C	A	-	-	-	-	-	-	55	0	0	45	4	8.9	47	0	0	139	1	0.7	444	16	3.6	371	1	0.3	0.975975343	TRUE	TRUE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.533289421	0.533289421	1	0	0	1	0.215712575	0.215712575	1	0.032315789	0.032315789	1	3	2	1	0.501794837	0.0000791	1.69E-09	1	0.844273344	YES	1_1	0_0	somatic	custom.pulldown.HiSeq
PD9852b	1	238564960	G	C	-	-	-	-	-	-	36	0	0	63	10	15.9	41	1	2.4	0	0	NA	0	0	NA	1	0	0	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.952730539	0.952730539	1	0.258526316	0.258526316	1	NA	NA	1	0	0	1	4	NA	1	1	9.81E-13	1	0.18577148	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	238773415	G	A	RAMP1	CCDS2522.1	r.?	-	-	intronic	20	0	0	38	18	47.4	21	4	19	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.892215569	0.946107784	2	1.666666667	1.666666667	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.16E-31	1	0.00000349	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	136212150	G	T	-	-	-	-	-	-	28	0	0	52	39	75	37	7	18.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.402297358	3.60351971	4	3	0	0	0.597702642	0.39648029	5	4	0	0	0.402297358	0.60351971	4.795734994	1.089370982	4.402297358	1.960959962	1.960959962	1	NA	NA	0	NA	NA	0	4	NA	1	1	1.08E-78	1	7.05E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	239595717	C	G	-	-	-	-	-	-	35	0	0	51	15	29.4	37	7	18.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.761652695	0.880826347	2	2.035894737	1.017947368	2	NA	NA	1	NA	NA	1	4	NA	1	1	8.22E-23	1	7.05E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	239625689	T	A	-	-	-	-	-	-	51	0	0	56	9	16.1	35	6	17.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.964714571	0.964714571	1	1.842	1.842	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.20E-11	1	2.24E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	239858810	C	T	CHRM3	CCDS1616.1	r.?	-	-	intronic	36	0	0	34	9	26.5	25	3	12	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.587884232	1.587884232	1	1.292631579	1.292631579	1	NA	NA	1	NA	NA	1	4	NA	1	1	9.15E-14	1	0.00026475	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	240094673	C	T	-	-	-	-	-	-	57	0	0	52	5	9.6	36	0	0	0	0	NA	0	0	NA	2	0	0	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.575233533	0.575233533	1	0	0	1	NA	NA	1	0	0	1	3	NA	1	1	0.00000668	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	240566907	T	C	FMN2	CCDS31069.2	r.?	-	-	intronic	44	0	0	60	21	35	29	3	10.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	2.097205589	1.048602794	2	1.109508772	1.109508772	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.16E-33	1	0.000414371	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	240598139	G	A	-	-	-	-	-	-	11	0	0	33	14	42.4	9	3	33.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.69261477	0.846307385	2	2.921052632	2.921052632	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.57E-24	1	0.0000103	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	240692445	C	T	GREM2	CCDS31070.1	r.?	-	-	intronic	43	0	0	36	6	16.7	33	6	18.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.000666667	1.000666667	1	1.960491228	1.960491228	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.68E-08	1	1.54E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	240791770	C	T	-	-	-	-	-	-	65	0	0	55	17	30.9	30	3	10	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.851532934	0.925766467	2	1.077192982	1.077192982	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.35E-26	1	0.000458697	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	136791753	C	A	-	-	-	-	-	-	38	0	0	46	6	13	40	0	0	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	4.402297358	3.60351971	4	3	0	0	0.597702642	0.39648029	5	4	0	0	0.402297358	0.60351971	0.831260732	0.831260732	1	0	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	0.000000123	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	241076640	T	C	MYEOV2	CCDS2532.1	r.?	-	-	upstream	21	0	0	30	13	43.3	13	1	7.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.728542914	0.864271457	2	0.675438596	0.675438596	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.35E-22	1	0.063085307	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	241092318	A	G	RGS7	CCDS31071.1	r.?	-	-	intronic	53	0	0	49	15	30.6	39	8	20.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.833556886	0.916778443	2	2.208245614	1.104122807	2	NA	NA	1	NA	NA	1	4	NA	1	1	4.10E-23	1	2.09E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	241930382	C	A	ENSG00000226321	ENST00000443866	r.?	-	-	intronic	19	0	0	47	9	19.1	27	3	11.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.76247505	0.76247505	1	0.973684211	0.973684211	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.24E-12	1	0.000334187	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	242041602	G	A	PASK	CCDS2545.1	r.?	-	-	downstream	12	0	0	44	29	65.9	12	2	16.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.630738523	1.315369261	2	1.464912281	1.464912281	1	NA	NA	1	NA	NA	1	4	NA	1	1	3.98E-56	1	0.001595918	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	242752360	C	T	-	-	-	-	-	-	38	0	0	45	15	33.3	36	9	25	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.995341317	0.997670659	2	2.692982456	1.346491228	2	NA	NA	1	NA	NA	1	4	NA	1	1	9.14E-24	1	1.63E-13	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	243098838	G	A	-	-	-	-	-	-	50	0	0	41	10	24.4	35	2	5.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.462051896	1.462051896	1	0.614	0.614	1	NA	NA	1	NA	NA	1	4	NA	1	1	9.51E-15	1	0.013332991	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	244350180	G	T	-	-	-	-	-	-	28	0	0	46	13	28.3	34	8	23.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	1.695740519	0.847870259	2	2.531403509	1.265701754	2	NA	NA	1	NA	NA	1	4	NA	1	1	1.07E-19	1	6.32E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	244986517	G	C	-	-	-	-	-	-	22	0	0	47	13	27.7	25	4	16	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.486710421	4	2	2	2	2	0.513289579	1	3	NA	2	NA	0.486710421	NA	1.79460721	0.897303605	2	1.723508772	1.723508772	1	NA	NA	0	NA	NA	1	4	NA	1	1	1.47E-19	1	0.00000727	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	245240296	G	A	EFCAB2	CCDS44341.1	r.?	-	-	intronic	33	0	0	44	19	43.2	43	7	16.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.486710421	4	2	2	2	2	0.513289579	1	3	NA	2	NA	0.486710421	NA	2.7988098	1.125506925	2.486710421	1.755824561	1.755824561	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.39E-32	1	2.15E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	245529680	A	T	KIF26B	CCDS44342.1	r.?	-	-	intronic	31	0	0	51	4	7.8	24	0	0	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.486710421	4	2	2	2	2	0.513289579	1	3	NA	2	NA	0.486710421	NA	0.505340658	0.505340658	1	0	0	1	NA	NA	0	NA	NA	1	3	NA	1	1	0.000129466	1	1	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	139313686	C	A	-	-	-	-	-	-	57	0	0	46	30	65.2	33	12	36.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.402297358	3.60351971	4	3	0	0	0.597702642	0.39648029	5	4	0	0	0.402297358	0.60351971	4.169092288	1.042273072	4	3.776663631	1.048048556	3.60351971	NA	NA	1	NA	NA	0	4	NA	1	1	8.54E-58	1	7.86E-20	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	245922322	T	C	SMYD3	CCDS31083.1	r.?	-	-	intronic	52	0	0	54	23	42.6	30	10	33.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.486710421	4	2	2	2	2	0.513289579	1	3	NA	2	NA	0.486710421	NA	2.759937442	1.109874885	2.486710421	3.587052632	1.793526316	2	NA	NA	0	NA	NA	1	4	NA	1	1	1.12E-38	1	2.68E-16	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	245935573	T	A	SMYD3	CCDS31083.1	r.?	-	-	intronic	56	0	0	56	5	8.9	34	0	0	166	0	0	363	14	3.9	247	0	0	1	TRUE	FALSE	4.486710421	4	2	2	2	2	0.513289579	1	3	NA	2	NA	0.486710421	NA	0.576606649	0.576606649	1	0	0	1	0.252670329	0.252670329	1	0	NA	0	3	NA	1	1	0.00000965	7.37E-09	1	1	YES	1_1	0_0	somatic	custom.pulldown.HiSeq
PD9852b	1	246395355	A	T	SMYD3	CCDS31083.1	r.?	-	-	intronic	53	0	0	45	11	24.4	39	4	10.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.486710421	4	2	2	2	2	0.513289579	1	3	NA	2	NA	0.486710421	NA	1.580809239	1.580809239	1	1.109508772	1.109508772	1	NA	NA	1	NA	NA	1	4	NA	1	1	4.24E-16	1	0.0000447	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	144878755	C	A	-	-	-	-	-	-	52	1	1.9	49	34	69.4	26	5	19.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.402297358	3.60351971	4	3	0	0	0.597702642	0.39648029	5	4	0	0	0.402297358	0.60351971	4.437653448	1.008031282	4.402297358	1.992086311	1.992086311	1	NA	NA	1	NA	NA	0	4	NA	0.229451111	1	8.53E-67	1	0.000000188	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	150631289	G	T	-	-	-	-	-	-	28	0	0	94	27	28.7	28	1	3.6	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	4.402297358	3.60351971	4	3	0	0	0.597702642	0.39648029	5	4	0	0	0.402297358	0.60351971	1.835167925	0.917583962	2	0.373516183	NA	0	NA	NA	1	NA	NA	0	NA	NA	1	1	1.48E-39	1	0.130947004	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	247848615	T	A	-	-	-	-	-	-	47	0	0	66	17	25.8	49	6	12.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.486710421	4	2	2	2	2	0.513289579	1	3	NA	2	NA	0.486710421	NA	1.671511408	1.124301938	1.486710421	1.314175439	1.314175439	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.52E-24	1	0.000000182	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	150876751	G	T	PRRG3	CCDS14699.1	r.?	-	-	downstream	26	0	0	45	9	20	29	7	24.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.402297358	3.60351971	4	3	0	0	0.597702642	0.39648029	5	4	0	0	0.402297358	0.60351971	1.278862665	1.278862665	1	2.500483338	0.960424201	2.60351971	NA	NA	0	NA	NA	0	4	NA	1	1	1.47E-12	1	1.11E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	248559861	C	G	-	-	-	-	-	-	61	0	0	47	15	31.9	48	5	10.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.486710421	4	2	2	2	2	0.513289579	1	3	NA	2	NA	0.486710421	NA	2.066713718	1.033356859	2	1.120280702	1.120280702	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.97E-23	1	0.00000447	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	248738947	T	G	OR2T34	CCDS31120.1	r.?	-	-	upstream	54	0	0	68	22	32.4	30	4	13.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.486710421	4	2	2	2	2	0.513289579	1	3	NA	2	NA	0.486710421	NA	2.09910735	1.049553675	2	1.432666667	1.432666667	1	NA	NA	1	NA	NA	0	4	NA	1	1	7.67E-34	1	0.0000154	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	248747624	T	C	-	-	-	-	-	-	49	0	0	71	19	26.8	44	2	4.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.486710421	4	2	2	2	2	0.513289579	1	3	NA	2	NA	0.486710421	NA	1.736298672	0.868149336	2	0.484736842	0.484736842	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.29E-27	1	0.020580492	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	106239092	T	C	-	-	-	-	-	-	48	0	0	41	0	0	35	4	11.4	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	0	NA	0	1.342	1.342	1	NA	NA	0	NA	NA	1	NA	NA	1	1	1	1	0.0000289	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	1898432	G	A	-	-	-	-	-	-	25	0	0	53	4	7.5	32	5	15.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	9	5.384331439	6	3	3	2	1	0.615668561	NA	4	NA	2	NA	0.384331439	0.824401198	0.824401198	1	1.896376757	1.896376757	1	NA	NA	1	NA	NA	0	4	NA	1	1	0.000150502	1	0.000000562	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	9912830	C	G	CTNNBIP1	CCDS106.1	r.?	-	-	intronic	20	0	0	23	0	0	21	3	14.3	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	0	NA	0	1.683385965	1.683385965	1	NA	NA	0	NA	NA	1	NA	NA	1	1	1	1	0.000155401	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	119933765	T	C	HAO2	CCDS901.1	r.?	-	-	intronic	58	0	0	39	0	0	44	5	11.4	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	0	NA	0	1.342	1.342	1	NA	NA	0	NA	NA	1	NA	NA	1	1	1	1	0.00000288	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	173336395	C	A	AL022310.2	ENST00000421168	r.?	-	-	intronic	63	0	0	51	0	0	39	4	10.3	0	0	NA	0	0	NA	2	0	0	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0	0	1	1.109508772	1.109508772	1	NA	NA	1	0	0	1	1	NA	1	1	1	1	0.0000447	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	4825103	G	A	TICAM1	CCDS12136.1	r.?	-	-	intronic	15	0	0	31	3	9.7	20	5	25	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5.428592363	5.384331439	3	3	2	2	0.571407637	0.615668561	4	4	2	2	0.428592363	0.384331439	0.719799008	0.719799008	1	3.039065316	1.013021772	3	NA	NA	0	NA	NA	0	4	NA	1	1	0.000505952	1	4.55E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	83866341	C	T	-	-	-	-	-	-	59	0	0	31	5	16.1	32	4	12.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	0.803714571	0.803714571	1	1.471491228	1.471491228	1	NA	NA	0	NA	NA	1	4	NA	1	1	0.000000476	1	0.0000201	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	5630074	G	A	SAFB	CCDS12142.1	r.?	-	-	intronic	46	0	0	35	9	25.7	33	5	15.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5.428592363	5.384331439	3	3	2	2	0.571407637	0.615668561	4	4	2	2	0.428592363	0.384331439	1.907096341	0.953548171	2	1.847751712	1.847751712	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.23E-13	1	0.00000066	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	181835340	C	A	-	-	-	-	-	-	55	0	0	54	0	0	48	4	8.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0	0	1	0.894070175	0.894070175	1	NA	NA	1	NA	NA	1	1	NA	1	1	1	1	0.000102016	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	197705904	T	C	DENND1B	CCDS44289.1	r.?	-	-	intronic	39	0	0	83	0	0	56	7	12.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	8.663585187	4	6	2	2	2	0.336414813	1	6	NA	3	NA	0.663585187	NA	0	0	1	1.346491228	1.346491228	1	NA	NA	1	NA	NA	0	1	NA	1	1	1	1	1.46E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	210974097	G	C	KCNH1	CCDS31015.1	r.?	-	-	intronic	53	0	0	43	0	0	38	5	13.2	0	0	NA	2	0	0	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0	0	1	1.421894737	1.421894737	1	0	0	1	NA	NA	1	1	NA	1	1	1	1	0.00000137	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	216112329	T	A	USH2A	CCDS31025.1	r.?	-	-	intronic	68	0	0	60	0	0	45	4	8.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0	0	1	0.958701754	0.958701754	1	NA	NA	1	NA	NA	1	1	NA	1	1	1	1	0.0000791	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	8352664	A	G	ENSG00000234563	ENST00000446572	r.?	-	-	intronic	31	0	0	45	0	0	40	4	10	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3.37044448	5	2	3	1	2	0.62955552	1	2	NA	2	NA	0.37044448	NA	0	NA	0	1.177192982	1.177192982	1	NA	NA	0	NA	NA	1	NA	NA	1	1	1	1	0.0000495	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	9838951	T	G	-	-	-	-	-	-	42	0	0	48	0	0	33	3	9.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7	4.260310284	4	2	3	2	1	0.739689716	NA	3	NA	2	NA	0.260310284	0	0	1	1.00393385	1.00393385	1	NA	NA	1	NA	NA	0	1	NA	1	1	1	1	0.000609557	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	233187094	T	C	PCNXL2	CCDS44335.1	r.?	-	-	intronic	50	0	0	48	0	0	34	4	11.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0	0	1	1.271087719	1.271087719	1	NA	NA	1	NA	NA	1	1	NA	1	1	1	1	0.0000257	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	239991050	A	T	CHRM3	CCDS1616.1	r.?	-	-	intronic	46	0	0	39	0	0	37	4	10.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0	0	1	1.163368421	1.163368421	1	NA	NA	1	NA	NA	1	1	NA	1	1	1	1	0.0000362	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	11535317	G	C	-	-	-	-	-	-	39	0	0	10	2	20	17	3	17.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1	2.620991218	1	2	0	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0.598403194	0.598403194	1	1.653154103	1.653154103	1	NA	NA	0	NA	NA	1	4	NA	1	1	0.001095391	1	0.0000807	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	248423469	A	T	-	-	-	-	-	-	58	0	0	50	0	0	45	4	8.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.486710421	4	2	2	2	2	0.513289579	1	3	NA	2	NA	0.486710421	NA	0	0	1	0.958701754	0.958701754	1	NA	NA	1	NA	NA	1	1	NA	1	1	1	1	0.0000791	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	11641258	C	T	-	-	-	-	-	-	48	0	0	51	0	0	24	5	20.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	4	4	0	0	1	1	NA	NA	NA	NA	NA	NA	0	0	1	2.240561404	2.240561404	1	NA	NA	1	NA	NA	1	1	NA	1	1	1	1	0.000000123	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	12027951	G	C	-	-	-	-	-	-	37	0	0	30	0	0	27	3	11.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0	0	1	0.973684211	0.973684211	1	NA	NA	1	NA	NA	1	1	NA	1	1	1	1	0.000334187	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	11723082	T	A	GREB1	CCDS42655.1	r.?	-	-	intronic	30	0	0	48	0	0	19	3	15.8	0	0	NA	0	0	NA	2	0	0	1	TRUE	FALSE	4	4	4	4	0	0	1	1	NA	NA	NA	NA	NA	NA	0	0	1	1.701964912	1.701964912	1	NA	NA	1	0	0	1	1	NA	1	1	1	1	0.000114071	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	22627314	G	T	-	-	-	-	-	-	39	0	0	38	0	0	38	6	15.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	4	4	0	0	1	1	NA	NA	NA	NA	NA	NA	0	0	1	1.701964912	1.701964912	1	NA	NA	1	NA	NA	1	1	NA	1	1	1	1	3.76E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	12746067	A	G	-	-	-	-	-	-	62	0	0	41	4	9.8	35	4	11.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.661749236	3	2	2	0	1	0.338250764	1	2	NA	1	NA	0.661749236	NA	0.45606899	0.45606899	1	1.114	1.114	1	NA	NA	0	NA	NA	1	4	NA	1	1	0.0000546	1	0.0000289	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	24690309	G	T	-	-	-	-	-	-	39	0	0	45	0	0	36	4	11.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	4	4	0	0	1	1	NA	NA	NA	NA	NA	NA	0	0	1	1.195684211	1.195684211	1	NA	NA	1	NA	NA	1	1	NA	1	1	1	1	0.0000324	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	13844378	C	T	-	-	-	-	-	-	37	0	0	40	0	0	31	4	12.9	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3.37044448	5	2	3	1	2	0.62955552	1	2	NA	2	NA	0.37044448	NA	0	NA	0	1.518578947	1.518578947	1	NA	NA	0	NA	NA	1	NA	NA	1	1	1	1	0.0000177	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	14117884	C	T	-	-	-	-	-	-	47	0	0	40	0	0	27	4	14.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0	0	1	1.298245614	1.298245614	1	NA	NA	1	NA	NA	1	1	NA	1	1	1	1	0.00001	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	30219123	T	G	-	-	-	-	-	-	40	0	0	48	0	0	32	4	12.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	4	4	0	0	1	1	NA	NA	NA	NA	NA	NA	0	0	1	1.346491228	1.346491228	1	NA	NA	1	NA	NA	1	1	NA	1	1	1	1	0.0000201	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	14246965	G	A	C1orf196	ENST00000412667	r.?	-	-	intronic	49	0	0	40	4	10	27	7	25.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	0.499201597	0.499201597	1	3.048929825	1.016309942	3	NA	NA	0	NA	NA	1	4	NA	1	1	0.0000495	1	6.36E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	21	14534093	G	A	-	-	-	-	-	-	46	0	0	50	3	6	44	8	18.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5.21139392	6	4	5	1	1	0.78860608	1	4	NA	2	NA	0.21139392	NA	0.432204593	0.432204593	1	2.324491228	1.162245614	2	NA	NA	0	NA	NA	1	4	NA	1	1	0.002055544	1	5.90E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	49932207	C	A	-	-	-	-	-	-	54	0	0	58	0	0	46	5	10.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	0	0	1	1.392140351	1.392140351	1	NA	NA	1	NA	NA	1	1	NA	1	1	1	1	0.00000361	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	56249687	A	T	-	-	-	-	-	-	59	0	0	67	0	0	40	4	10	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	0	0	1	1.277192982	1.277192982	1	NA	NA	1	NA	NA	1	1	NA	1	1	1	1	0.0000495	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	15418609	C	T	C1QTNF7	CCDS47025.1	r.?	-	-	intronic	46	0	0	47	4	8.5	39	5	12.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.661749236	3	2	2	0	1	0.338250764	1	2	NA	1	NA	0.661749236	NA	0.395570042	0.59776426	0.661749236	1.250807018	1.250807018	1	NA	NA	0	NA	NA	1	4	NA	1	1	0.0000939	1	0.00000156	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	63157764	C	A	EHBP1	CCDS1872.1	r.?	-	-	intronic	48	0	0	74	0	0	44	5	11.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	0	0	1	1.456	1.456	1	NA	NA	1	NA	NA	1	1	NA	1	1	1	1	0.00000288	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	16040187	G	A	PROM1	CCDS47029.1	r.?	-	-	intronic	31	0	0	28	3	10.7	25	4	16	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.661749236	3	2	2	0	1	0.338250764	1	2	NA	1	NA	0.661749236	NA	0.497952877	0.497952877	1	1.563508772	1.563508772	1	NA	NA	0	NA	NA	1	4	NA	1	1	0.000372895	1	0.00000727	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	16433583	C	A	-	-	-	-	-	-	46	0	0	36	4	11.1	31	4	12.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	0.554113772	0.554113772	1	1.518578947	1.518578947	1	NA	NA	0	NA	NA	1	4	NA	1	1	0.0000324	1	0.0000177	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	16625507	T	A	-	-	-	-	-	-	48	0	0	48	0	0	34	3	8.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	4	4	0	0	1	1	NA	NA	NA	NA	NA	NA	0	0	1	0.947929825	0.947929825	1	NA	NA	1	NA	NA	1	1	NA	1	1	1	1	0.000666058	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	16841672	G	T	-	-	-	-	-	-	50	0	0	48	4	8.3	36	4	11.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.37044448	5	2	3	1	2	0.62955552	1	2	NA	2	NA	0.37044448	NA	0.445084217	1.201486974	0.37044448	1.306684211	1.306684211	1	NA	NA	0	NA	NA	1	4	NA	1	1	0.000102016	1	0.0000324	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	104831117	G	T	-	-	-	-	-	-	48	0	0	68	0	0	43	5	11.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.128496294	4	2	2	2	2	0.871503706	1	3	NA	2	NA	0.128496294	NA	0	0	1	1.24954386	1.24954386	1	NA	NA	1	NA	NA	0	1	NA	1	1	1	1	0.00000257	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	117424523	G	T	-	-	-	-	-	-	50	0	0	46	0	0	36	5	13.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.128496294	4	2	2	2	2	0.871503706	1	3	NA	2	NA	0.128496294	NA	0	0	1	1.497298246	1.497298246	1	NA	NA	1	NA	NA	1	1	NA	1	1	1	1	0.00000104	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	17	17592278	T	A	RAI1	CCDS11188.1	r.?	-	-	intronic	19	0	0	35	0	0	24	3	12.5	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	2	3.601202326	2	3	0	0	1	0.398797674	NA	3	NA	1	NA	0.601202326	0	NA	0	1.296641519	1.296641519	1	NA	NA	0	NA	NA	1	NA	NA	1	1	1	1	0.000233853	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	19134157	T	A	-	-	-	-	-	-	15	0	0	13	3	23.1	26	9	34.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.922155689	0.922155689	1	3.035087719	1.51754386	2	NA	NA	1	NA	NA	1	4	NA	1	1	0.0000344	1	5.65E-15	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	125951696	A	C	-	-	-	-	-	-	47	0	0	33	0	0	27	5	18.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0	0	1	1.622807018	1.622807018	1	NA	NA	1	NA	NA	1	1	NA	1	1	1	1	0.00000023	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	127712634	T	C	-	-	-	-	-	-	48	0	0	34	0	0	32	4	12.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0	0	1	1.096491228	1.096491228	1	NA	NA	1	NA	NA	1	1	NA	1	1	1	1	0.0000201	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	20591606	C	A	PDE3A	CCDS31754.1	r.?	-	-	intronic	50	0	0	28	3	10.7	41	6	14.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.534145709	0.534145709	1	1.426701754	1.426701754	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.000372895	1	6.05E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	132598623	A	T	-	-	-	-	-	-	45	0	0	52	0	0	35	4	11.4	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	4	6	2	3	2	3	1	1	NA	NA	NA	NA	NA	NA	0	NA	0	1.456	1.456	1	NA	NA	0	NA	NA	1	NA	NA	1	1	1	1	0.0000289	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	133429605	G	T	NCKAP5	CCDS46418.1	r.7361c>a	c.?	p.?	3'UTR variant	47	0	0	54	0	0	42	4	9.5	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	4	6	2	3	2	3	1	1	NA	NA	NA	NA	NA	NA	0	NA	0	1.213333333	1.213333333	1	NA	NA	0	NA	NA	1	NA	NA	1	1	1	1	0.0000601	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	62184998	C	T	PTPRG	CCDS2895.1	r.?	-	-	intronic	41	0	0	41	3	7.3	33	5	15.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	0.39026886	1.102040976	0.354132803	1.789333333	1.789333333	1	NA	NA	0	NA	NA	1	4	NA	1	1	0.001155993	1	0.00000066	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	137111894	G	T	-	-	-	-	-	-	32	0	0	60	0	0	52	5	9.6	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	4	6	2	4	2	2	1	1	NA	NA	NA	NA	NA	NA	0	NA	0	1.226105263	1.226105263	1	NA	NA	0	NA	NA	1	NA	NA	1	1	1	1	0.00000668	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	22367921	T	G	ZNF676	CCDS42539.1	r.?	-	-	intronic	28	0	0	42	0	0	31	3	9.7	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	5.384331439	2	3	1	2	1	0.615668561	NA	4	NA	2	NA	0.384331439	0	NA	0	1.179157343	1.179157343	1	NA	NA	0	NA	NA	1	NA	NA	1	1	1	1	0.000505952	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	138433576	C	A	THSD7B	ENST00000409968	r.?	-	-	intronic	38	0	0	58	0	0	39	5	12.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	0	0	1	1.634807018	1.634807018	1	NA	NA	1	NA	NA	1	1	NA	1	1	1	1	0.00000156	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	178531849	C	A	PDE11A	CCDS42786.1	r.?	-	-	intronic	34	0	0	53	0	0	27	5	18.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0	0	1	1.992807018	1.992807018	1	NA	NA	1	NA	NA	1	1	NA	1	1	1	1	0.00000023	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	184376407	A	C	-	-	-	-	-	-	38	0	0	55	0	0	30	5	16.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0	0	1	1.798912281	1.798912281	1	NA	NA	1	NA	NA	1	1	NA	1	1	1	1	0.000000401	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	196912615	A	C	DNAH7	CCDS42794.1	r.?	-	-	intronic	49	0	0	53	0	0	36	4	11.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0	0	1	1.195684211	1.195684211	1	NA	NA	1	NA	NA	1	1	NA	1	1	1	1	0.0000324	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	214875351	C	A	SPAG16	CCDS2396.1	r.?	-	-	intronic	50	0	0	46	0	0	36	6	16.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0	0	1	1.798912281	1.798912281	1	NA	NA	1	NA	NA	1	1	NA	1	1	1	1	2.68E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	223039836	A	T	-	-	-	-	-	-	39	0	0	41	0	0	38	4	10.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0	0	1	1.131052632	1.131052632	1	NA	NA	1	NA	NA	1	1	NA	1	1	1	1	0.0000403	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	1660180	A	G	-	-	-	-	-	-	37	0	0	33	0	0	34	4	11.8	1	0	0	0	0	NA	0	0	NA	1	FALSE	FALSE	3.37044448	5	2	3	1	2	0.62955552	1	2	NA	2	NA	0.37044448	NA	0	NA	0	1.389087719	1.389087719	1	NA	NA	0	NA	NA	1	NA	NA	1	1	1	1	0.0000257	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	47328409	C	G	KLHL18	CCDS33749.1	r.?	-	-	intronic	45	0	0	51	1	2	27	4	14.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5	5	3	3	2	2	1	1	NA	NA	NA	NA	NA	NA	0.139840319	0.139840319	1	1.742245614	1.742245614	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.225579006	1	0.00001	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	50674351	T	A	MAPKAPK3	CCDS2832.1	r.?	-	-	intronic	27	0	0	33	0	0	27	4	14.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5	5	3	3	2	2	1	1	NA	NA	NA	NA	NA	NA	0	0	1	1.742245614	1.742245614	1	NA	NA	1	NA	NA	1	1	NA	1	1	1	1	0.00001	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	56036053	T	A	ERC2	CCDS46851.1	r.?	-	-	intronic	57	0	0	43	1	2.3	40	6	15	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	0.122961422	NA	0	1.765789474	1.765789474	1	NA	NA	0	NA	NA	1	NA	NA	1	1	0.193893409	1	5.18E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	81434112	G	A	-	-	-	-	-	-	60	0	0	46	0	0	35	5	14.3	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	0	NA	0	1.683385965	1.683385965	1	NA	NA	0	NA	NA	1	NA	NA	1	1	1	1	0.000000895	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	84102173	G	A	-	-	-	-	-	-	59	0	0	47	0	0	32	5	15.6	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	0	NA	0	1.836421053	1.836421053	1	NA	NA	0	NA	NA	1	NA	NA	1	1	1	1	0.000000562	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	89505919	T	G	EPHA3	CCDS2922.1	r.?	-	-	intronic	56	0	0	57	0	0	39	4	10.3	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	0	NA	0	1.212508772	1.212508772	1	NA	NA	0	NA	NA	1	NA	NA	1	1	1	1	0.0000447	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	21	25081135	G	T	-	-	-	-	-	-	39	0	0	43	5	11.6	31	4	12.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.559012765	5	2	3	2	2	0.440987235	1	3	NA	2	NA	0.559012765	NA	0.759919333	0.759919333	1	1.518578947	1.518578947	1	NA	NA	0	NA	NA	1	4	NA	1	1	0.00000257	1	0.0000177	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	25089806	C	A	-	-	-	-	-	-	18	0	0	43	0	0	14	3	21.4	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	2.661749236	3	2	2	0	1	0.338250764	1	2	NA	1	NA	0.661749236	NA	0	NA	0	2.091192982	2.091192982	1	NA	NA	0	NA	NA	1	NA	NA	1	1	1	1	0.0000437	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	25474464	C	A	NINL	CCDS33452.1	r.?	-	-	intronic	9	0	0	32	4	12.5	20	6	30	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	4.362325493	2	2	1	2	1	0.637674507	NA	3	NA	2	NA	0.362325493	0.624001996	0.624001996	1	3.340276595	1.413978135	2.362325493	NA	NA	0	NA	NA	0	4	NA	1	1	0.0000201	1	5.70E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	25761813	T	G	CDH2	CCDS11891.1	r.?	-	-	upstream	55	0	0	37	0	0	34	3	8.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0	0	1	0.771929825	0.771929825	1	NA	NA	1	NA	NA	1	1	NA	1	1	1	1	0.000666058	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	28344274	C	A	-	-	-	-	-	-	47	0	0	26	3	11.5	31	4	12.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.661749236	3	2	2	0	1	0.338250764	1	2	NA	1	NA	0.661749236	NA	0.535182998	0.535182998	1	1.260578947	1.260578947	1	NA	NA	0	NA	NA	1	4	NA	1	1	0.000298167	1	0.0000177	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	26269702	G	T	-	-	-	-	-	-	46	0	0	19	0	0	22	3	13.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1	1	1	1	0	0	1	1	NA	NA	NA	NA	NA	NA	0	0	1	1.056982456	1.056982456	1	NA	NA	1	NA	NA	1	1	NA	1	1	1	1	0.000179267	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	105945593	G	A	-	-	-	-	-	-	60	0	0	58	0	0	44	5	11.4	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	0	NA	0	1.342	1.342	1	NA	NA	0	NA	NA	1	NA	NA	1	1	1	1	0.00000288	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	109239636	C	A	-	-	-	-	-	-	42	0	0	53	0	0	40	5	12.5	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	0	NA	0	1.471491228	1.471491228	1	NA	NA	0	NA	NA	1	NA	NA	1	1	1	1	0.00000178	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	116329919	T	G	LSAMP	ENST00000474851	r.?	-	-	intronic	67	0	0	49	0	0	38	7	18.4	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	0	NA	0	2.166035088	1.083017544	2	NA	NA	0	NA	NA	1	NA	NA	1	1	1	1	8.61E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	28036166	C	T	-	-	-	-	-	-	52	0	0	57	4	7	39	7	17.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5	4.32434803	4	2	1	2	1	0.67565197	NA	3	NA	2	NA	0.32434803	0.489441118	0.489441118	1	1.986233736	0.993116868	2	NA	NA	0	NA	NA	0	4	NA	1	1	0.000199821	1	1.04E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	28792866	C	T	-	-	-	-	-	-	48	0	0	44	5	11.4	34	5	14.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.661749236	3	2	2	0	1	0.338250764	1	2	NA	1	NA	0.661749236	NA	0.530529233	0.530529233	1	1.436473684	1.436473684	1	NA	NA	0	NA	NA	1	4	NA	1	1	0.00000288	1	0.000000771	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	154302593	T	C	-	-	-	-	-	-	57	0	0	47	0	0	32	5	15.6	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3.339473093	5	2	3	1	2	0.660526907	1	2	NA	2	NA	0.339473093	NA	0	NA	0	1.836421053	1.836421053	1	NA	NA	0	NA	NA	1	NA	NA	1	1	1	1	0.000000562	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	171131076	G	C	TNIK	CCDS46956.1	r.?	-	-	intronic	49	0	0	41	0	0	47	4	8.5	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	0	NA	0	1.000614035	1.000614035	1	NA	NA	0	NA	NA	1	NA	NA	1	1	1	1	0.0000939	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	130138097	C	A	-	-	-	-	-	-	50	0	0	36	3	8.3	23	4	17.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.277661109	2	1	1	1	1	0.722338891	NA	2	NA	1	NA	0.277661109	0.414337325	0.414337325	1	1.574628822	1.574628822	1	NA	NA	1	NA	NA	0	4	NA	1	1	0.000788827	1	0.00000513	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	178646939	G	T	-	-	-	-	-	-	65	0	0	72	0	0	41	4	9.8	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	0	NA	0	1.153649123	1.153649123	1	NA	NA	0	NA	NA	1	NA	NA	1	1	1	1	0.0000546	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	30376309	G	A	-	-	-	-	-	-	40	0	0	66	5	7.6	39	7	17.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5	4.32434803	4	2	1	2	1	0.67565197	NA	3	NA	2	NA	0.32434803	0.531393214	0.531393214	1	1.986233736	0.993116868	2	NA	NA	0	NA	NA	0	4	NA	1	1	0.0000217	1	1.04E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	182516032	A	G	ATP11B	CCDS33896.1	r.?	-	-	intronic	56	0	0	56	0	0	44	5	11.4	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	0	NA	0	1.342	1.342	1	NA	NA	0	NA	NA	1	NA	NA	1	1	1	1	0.00000288	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	193529075	C	G	-	-	-	-	-	-	61	0	0	59	0	0	54	6	11.1	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	0	NA	0	1.306684211	1.306684211	1	NA	NA	0	NA	NA	1	NA	NA	1	1	1	1	0.000000329	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	6264152	A	T	-	-	-	-	-	-	40	0	0	33	0	0	35	4	11.4	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	2.661749236	3	2	2	0	1	0.338250764	1	2	NA	1	NA	0.661749236	NA	0	NA	0	1.114	1.114	1	NA	NA	0	NA	NA	1	NA	NA	1	1	1	1	0.0000289	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	9383494	G	T	ENSG00000226350	ENST00000429096	r.?	-	-	upstream	30	0	0	33	0	0	42	6	14.3	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	2.661749236	3	2	2	0	1	0.338250764	1	2	NA	1	NA	0.661749236	NA	0	NA	0	1.397385965	1.397385965	1	NA	NA	0	NA	NA	1	NA	NA	1	1	1	1	7.02E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	32345652	T	A	SPAST	CCDS1778.1	r.?	-	-	intronic	42	0	0	43	4	9.3	39	6	15.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	4	4	2	2	1	1	NA	NA	NA	NA	NA	NA	0.743257485	0.743257485	1	1.966877193	1.966877193	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.000066	1	4.43E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	32687395	G	A	-	-	-	-	-	-	47	0	0	27	0	0	30	4	13.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0	0	1	1.166666667	1.166666667	1	NA	NA	1	NA	NA	1	1	NA	1	1	1	1	0.0000154	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	32875342	A	G	AHCY	CCDS13233.1	r.?	-	-	intronic	31	0	0	32	4	12.5	24	5	20.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	4.362325493	2	2	1	2	1	0.637674507	NA	3	NA	2	NA	0.362325493	0.624001996	0.624001996	1	2.315925106	0.980358174	2.362325493	NA	NA	0	NA	NA	0	4	NA	1	1	0.0000201	1	0.000000123	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	32941800	A	T	DMD	CCDS14233.1	r.?	-	-	intronic	47	0	0	71	0	0	36	5	13.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7	4.32434803	4	2	3	2	1	0.67565197	NA	3	NA	2	NA	0.32434803	0	0	1	1.542382622	1.542382622	1	NA	NA	1	NA	NA	0	1	NA	1	1	1	1	0.00000104	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	30701624	A	T	-	-	-	-	-	-	46	0	0	43	0	0	24	3	12.5	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	2.661749236	3	2	2	0	1	0.338250764	1	2	NA	1	NA	0.661749236	NA	0	NA	0	1.221491228	1.221491228	1	NA	NA	0	NA	NA	1	NA	NA	1	1	1	1	0.000233853	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	33204374	A	T	AC131263.1	ENST00000500025	r.?	-	-	intronic	37	0	0	32	0	0	31	3	9.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0	0	1	0.947877193	0.947877193	1	NA	NA	1	NA	NA	1	1	NA	1	1	1	1	0.000505952	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	33560080	A	T	-	-	-	-	-	-	54	0	0	32	0	0	30	5	16.7	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	2.661749236	3	2	2	0	1	0.338250764	1	2	NA	1	NA	0.661749236	NA	0	NA	0	1.631912281	1.631912281	1	NA	NA	0	NA	NA	1	NA	NA	1	1	1	1	0.000000401	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	33654297	A	T	TRBV25OR9-2	ENST00000399779	r.?	-	-	intronic	41	0	0	24	0	0	25	3	12	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	2.422406675	3.327893332	2	3	0	0	0.577593325	0.672106668	3	3	0	1	0.422406675	0.327893332	0	NA	0	1.211978779	1.211978779	1	NA	NA	0	NA	NA	1	NA	NA	1	1	1	1	0.00026475	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	33947210	T	A	-	-	-	-	-	-	55	0	0	31	4	12.9	33	4	12.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.661749236	3	2	2	0	1	0.338250764	1	2	NA	1	NA	0.661749236	NA	0.600335711	0.600335711	1	1.182403509	1.182403509	1	NA	NA	0	NA	NA	1	4	NA	1	1	0.0000177	1	0.0000228	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	47385331	G	T	GABRB1	CCDS3474.1	r.?	-	-	intronic	64	0	0	40	0	0	39	7	17.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0	0	1	1.749175439	1.749175439	1	NA	NA	1	NA	NA	1	1	NA	1	1	1	1	1.04E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	5067451	C	T	-	-	-	-	-	-	41	0	0	29	0	0	32	4	12.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0	0	1	1.096491228	1.096491228	1	NA	NA	1	NA	NA	1	1	NA	1	1	1	1	0.0000201	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	21362700	A	T	-	-	-	-	-	-	43	0	0	38	2	5.3	34	4	11.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.211576846	0.211576846	1	1.035087719	1.035087719	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.015598339	1	0.0000257	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	49533117	A	T	-	-	-	-	-	-	66	0	0	26	0	0	23	3	13	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0	0	1	1.270350877	1.270350877	1	NA	NA	1	NA	NA	1	1	NA	1	1	1	1	0.000205387	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	71461956	T	A	AMBN	CCDS3543.1	r.?	-	-	intronic	47	0	0	33	0	0	17	3	17.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	0	0	1	1.599020412	1.599020412	1	NA	NA	1	NA	NA	0	1	NA	1	1	1	1	0.0000807	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	79598021	T	A	-	-	-	-	-	-	46	0	0	48	0	0	33	5	15.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	0	0	1	1.380972174	1.380972174	1	NA	NA	1	NA	NA	0	1	NA	1	1	1	1	0.00000066	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	88076857	A	G	KLHL8	CCDS3617.1	r.?	-	-	downstream	47	0	0	37	0	0	27	4	14.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	0	0	1	1.344630801	1.344630801	1	NA	NA	1	NA	NA	0	1	NA	1	1	1	1	0.00001	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	157294379	A	T	-	-	-	-	-	-	30	0	0	22	0	0	18	5	27.8	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	2.854484501	2.277661109	2	1	0	1	0.145515499	0.722338891	2	2	1	1	0.854484501	0.277661109	0	NA	0	2.515786279	1.969056006	1.277661109	NA	NA	0	NA	NA	0	NA	NA	1	1	1	1	2.54E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	3999368	C	A	-	-	-	-	-	-	48	0	0	27	0	0	26	4	15.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0	0	1	1.350877193	1.350877193	1	NA	NA	1	NA	NA	1	1	NA	1	1	1	1	0.00000856	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	36771980	T	A	-	-	-	-	-	-	56	0	0	35	0	0	27	3	11.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0	0	1	0.973684211	0.973684211	1	NA	NA	1	NA	NA	1	1	NA	1	1	1	1	0.000334187	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	4485578	A	C	-	-	-	-	-	-	61	0	0	30	0	0	26	4	15.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0	0	1	1.350877193	1.350877193	1	NA	NA	1	NA	NA	1	1	NA	1	1	1	1	0.00000856	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	37152424	G	T	-	-	-	-	-	-	30	0	0	40	1	2.5	24	3	12.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6.241955165	4.32434803	4	2	2	2	0.758044835	0.67565197	4	3	3	2	0.241955165	0.32434803	0.205849278	0.205849278	1	1.387034732	1.387034732	1	NA	NA	0	NA	NA	0	4	NA	1	1	0.181679879	1	0.000233853	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	24751931	A	T	-	-	-	-	-	-	51	0	0	44	0	0	19	4	21.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0	0	1	1.850877193	1.850877193	1	NA	NA	1	NA	NA	1	1	NA	1	1	1	1	0.00000228	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	67242605	C	T	-	-	-	-	-	-	58	0	0	55	0	0	31	6	19.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0	0	1	2.089754386	2.089754386	1	NA	NA	1	NA	NA	1	1	NA	1	1	1	1	1.03E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	39412323	G	C	-	-	-	-	-	-	34	0	0	48	22	45.8	32	4	12.5	0	0	NA	1	0	0	0	0	NA	1	TRUE	FALSE	5	5	3	3	2	2	1	1	NA	NA	NA	NA	NA	NA	3.202343313	1.067447771	3	1.471491228	1.471491228	1	0	0	1	NA	NA	1	4	NA	1	1	5.76E-38	1	0.0000201	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	96818941	G	C	-	-	-	-	-	-	51	0	0	72	0	0	51	6	11.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0	0	1	1.271087719	1.271087719	1	NA	NA	1	NA	NA	1	1	NA	1	1	1	1	0.000000232	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	40806142	G	T	-	-	-	-	-	-	25	0	0	19	2	10.5	28	4	14.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.133128081	4	2	3	1	1	0.866871919	1	2	NA	2	NA	0.133128081	NA	0.538140125	0.538140125	1	1.540385965	1.540385965	1	NA	NA	0	NA	NA	1	4	NA	1	1	0.004039874	1	0.0000116	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	136392861	T	A	SPOCK1	CCDS4191.1	r.?	-	-	intronic	50	0	0	26	0	0	26	3	11.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0	0	1	1.00877193	1.00877193	1	NA	NA	1	NA	NA	1	1	NA	1	1	1	1	0.000298167	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	17	42678236	A	C	-	-	-	-	-	-	34	0	0	30	0	0	28	3	10.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0	0	1	0.938596491	0.938596491	1	NA	NA	1	NA	NA	1	1	NA	1	1	1	1	0.000372895	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	163997163	C	G	AC008446.1	ENST00000486913	r.?	-	-	intronic	57	0	0	40	0	0	40	5	12.5	1	0	0	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0	0	1	1.346491228	1.346491228	1	NA	NA	1	NA	NA	1	1	NA	1	1	1	1	0.00000178	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	180433710	G	T	BTNL3	CCDS47358.1	r.2423g>u	c.?	p.?	3'UTR variant	56	0	0	49	0	0	42	4	9.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	6	3	3	3	3	1	1	NA	NA	NA	NA	NA	NA	0	0	1	1.213333333	1.213333333	1	NA	NA	1	NA	NA	1	1	NA	1	1	1	1	0.0000601	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	2917735	C	T	-	-	-	-	-	-	49	0	0	44	0	0	40	6	15	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	4.236173977	5.609750478	2	3	2	2	0.763826023	0.390249522	3	3	2	3	0.236173977	0.609750478	0	NA	0	1.857252045	1.857252045	1	NA	NA	0	NA	NA	1	NA	NA	1	1	1	1	5.18E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	45046546	A	C	SUPT3H	CCDS34466.1	r.?	-	-	intronic	48	0	0	43	0	0	34	3	8.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	3.588049503	2	2	2	1	1	0.411950497	NA	2	NA	2	NA	0.588049503	0	0	1	0.911678181	0.911678181	1	NA	NA	1	NA	NA	0	1	NA	1	1	1	1	0.000666058	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	45154960	G	A	CDCP1	CCDS2727.1	r.?	-	-	intronic	40	0	0	44	3	6.8	37	6	16.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5	5	3	3	2	2	1	1	NA	NA	NA	NA	NA	NA	0.475457086	0.475457086	1	1.907052632	1.907052632	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.00142027	1	3.18E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	16900469	C	G	-	-	-	-	-	-	47	0	0	54	0	0	38	4	10.5	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	4.293868134	5.486552635	2	3	2	2	0.706131866	0.513447365	3	3	2	3	0.293868134	0.486552635	0	NA	0	1.287140658	1.287140658	1	NA	NA	0	NA	NA	1	NA	NA	1	1	1	1	0.0000403	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	22563510	C	G	-	-	-	-	-	-	55	0	0	61	0	0	42	6	14.3	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	4.293868134	5.486552635	2	3	2	2	0.706131866	0.513447365	3	3	2	3	0.293868134	0.486552635	0	NA	0	1.752962992	1.752962992	1	NA	NA	0	NA	NA	0	NA	NA	1	1	1	1	7.02E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	41169354	C	G	TREML2	ENST00000373108	r.?	-	-	upstream	31	0	0	50	2	4	43	4	9.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6.36715821	6	4	4	2	2	0.63284179	1	5	NA	2	NA	0.36715821	NA	0.334366967	0.334366967	1	1.187789474	1.187789474	1	NA	NA	1	NA	NA	0	4	NA	1	1	0.026131524	1	0.000066	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	22997764	A	C	-	-	-	-	-	-	54	0	0	49	0	0	37	4	10.8	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	4.293868134	5.486552635	2	3	2	2	0.706131866	0.513447365	3	3	2	3	0.293868134	0.486552635	0	NA	0	1.323916106	1.323916106	1	NA	NA	0	NA	NA	0	NA	NA	1	1	1	1	0.0000362	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	30765982	C	A	-	-	-	-	-	-	53	0	0	53	0	0	39	5	12.8	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	4.293868134	5.486552635	2	3	2	2	0.706131866	0.513447365	3	3	2	3	0.293868134	0.486552635	0	NA	0	1.569085755	1.569085755	1	NA	NA	0	NA	NA	1	NA	NA	1	1	1	1	0.00000156	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	47208784	A	C	TNFRSF21	CCDS4921.1	r.?	-	-	intronic	52	0	0	40	0	0	41	4	9.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	3.588049503	2	2	2	1	1	0.411950497	NA	2	NA	2	NA	0.588049503	0	0	1	1.015277974	1.015277974	1	NA	NA	1	NA	NA	0	1	NA	1	1	1	1	0.0000546	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	49914952	T	C	DEFB133	ENST00000398721	r.?	-	-	intronic	63	0	0	44	0	0	32	5	15.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	3.588049503	2	2	2	1	1	0.411950497	NA	2	NA	2	NA	0.588049503	0	0	1	1.616156775	1.616156775	1	NA	NA	1	NA	NA	0	1	NA	1	1	1	1	0.000000562	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	49724920	T	C	-	-	-	-	-	-	25	0	0	46	12	26.1	38	13	34.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	5	3	3	3	2	1	1	NA	NA	NA	NA	NA	NA	2.085916168	1.042958084	2	4.026	1.342	3	NA	NA	1	NA	NA	0	4	NA	1	1	8.12E-18	1	5.88E-21	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	69288452	C	A	-	-	-	-	-	-	40	0	0	28	0	0	31	4	12.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0	0	1	1.131578947	1.131578947	1	NA	NA	1	NA	NA	1	1	NA	1	1	1	1	0.0000177	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	78308930	G	T	-	-	-	-	-	-	42	0	0	35	0	0	31	4	12.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0	0	1	1.131578947	1.131578947	1	NA	NA	1	NA	NA	1	1	NA	1	1	1	1	0.0000177	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	17	50162273	G	A	CA10	CCDS32684.1	r.?	-	-	intronic	45	0	0	34	0	0	27	4	14.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0	0	1	1.298245614	1.298245614	1	NA	NA	1	NA	NA	1	1	NA	1	1	1	1	0.00001	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	84788500	G	A	MRAP2	CCDS5001.1	r.?	-	-	intronic	59	0	0	33	0	0	22	5	22.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0	0	1	1.99122807	1.99122807	1	NA	NA	1	NA	NA	1	1	NA	1	1	1	1	7.67E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	86954528	T	C	-	-	-	-	-	-	46	0	0	21	0	0	30	4	13.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0	0	1	1.166666667	1.166666667	1	NA	NA	1	NA	NA	1	1	NA	1	1	1	1	0.0000154	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	93325601	C	A	-	-	-	-	-	-	63	0	0	30	0	0	31	8	25.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0	0	1	2.263157895	1.131578947	2	NA	NA	1	NA	NA	1	1	NA	1	1	1	1	2.78E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	3238480	C	A	-	-	-	-	-	-	47	0	0	57	0	0	42	5	11.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7	4.260310284	4	2	3	2	1	0.739689716	NA	3	NA	2	NA	0.260310284	0	0	1	1.312836573	1.312836573	1	NA	NA	1	NA	NA	0	1	NA	1	1	1	1	0.00000228	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	22462547	C	T	ENSG00000105889	ENST00000406890	r.?	-	-	intronic	49	0	0	59	0	0	36	6	16.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5	4.260310284	3	2	2	2	1	0.739689716	NA	3	NA	2	NA	0.260310284	0	0	1	1.842384098	1.842384098	1	NA	NA	1	NA	NA	0	1	NA	1	1	1	1	2.68E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	29011621	G	C	-	-	-	-	-	-	42	0	0	99	0	0	61	8	13.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	10.19837984	8.289880778	8	6	2	2	0.801620163	0.710119222	8	6	3	3	0.198379837	0.289880778	0	0	1	1.973097189	0.986548594	2	NA	NA	1	NA	NA	0	1	NA	1	1	1	1	9.09E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	52139858	C	A	WDR51A	CCDS2846.1	r.?	-	-	intronic	32	0	0	36	4	11.1	20	3	15	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5	5	3	3	2	2	1	1	NA	NA	NA	NA	NA	NA	0.776113772	0.776113772	1	1.765789474	1.765789474	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.0000324	1	0.0001337	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	30749751	A	C	AC006978.1	ENST00000507825	r.?	-	-	intronic	38	0	0	88	0	0	53	4	7.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	10.19837984	8.289880778	8	6	2	2	0.801620163	0.710119222	8	6	3	3	0.198379837	0.289880778	0	0	1	1.129635795	1.129635795	1	NA	NA	1	NA	NA	0	1	NA	1	1	1	1	0.000150502	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	54528522	G	A	-	-	-	-	-	-	51	0	0	61	5	8.2	52	6	11.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6.720534823	4.32434803	5	2	1	2	0.279465177	0.67565197	5	3	2	2	0.720534823	0.32434803	0.714429165	0.714429165	1	1.276071953	1.276071953	1	NA	NA	0	NA	NA	0	4	NA	1	1	0.0000147	1	0.000000261	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	31973501	A	T	PDE1C	CCDS5437.1	r.?	-	-	intronic	51	0	0	119	0	0	53	4	7.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	10.19837984	8.289880778	8	6	2	2	0.801620163	0.710119222	8	6	3	3	0.198379837	0.289880778	0	0	1	1.129635795	1.129635795	1	NA	NA	1	NA	NA	0	1	NA	1	1	1	1	0.000150502	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	54364881	A	C	-	-	-	-	-	-	53	0	0	62	3	4.8	57	4	7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7	6	5	4	2	2	1	1	NA	NA	NA	NA	NA	NA	0.431616766	0.431616766	1	0.894035088	0.894035088	1	NA	NA	1	NA	NA	0	4	NA	1	1	0.003793816	1	0.000199821	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	45540393	G	A	-	-	-	-	-	-	43	0	0	96	0	0	39	6	15.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	10.19154907	8.289880778	8	6	2	2	0.808450931	0.710119222	8	6	3	3	0.191549069	0.289880778	0	0	1	2.319518833	0.855873356	2.710119222	NA	NA	1	NA	NA	0	1	NA	1	1	1	1	4.43E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	56574394	C	A	PCDH15	ENST00000373957	r.?	-	-	intronic	42	0	0	39	5	12.8	31	4	12.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.297222263	4	2	2	2	2	0.702777737	1	3	NA	2	NA	0.297222263	NA	0.805022494	0.805022494	1	1.389578947	1.389578947	1	NA	NA	1	NA	NA	0	4	NA	1	1	0.00000156	1	0.0000177	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	56993099	A	T	-	-	-	-	-	-	44	0	0	33	6	18.2	36	6	16.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.908546906	0.908546906	1	1.631912281	1.631912281	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.54E-08	1	2.68E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	50200034	C	G	C7orf72	CCDS47585.1	r.?	-	-	downstream	59	0	0	81	0	0	54	6	11.1	2	0	0	0	0	NA	0	0	NA	1	TRUE	FALSE	10.19154907	8.289880778	8	6	2	2	0.808450931	0.710119222	8	6	3	3	0.191549069	0.289880778	0	0	1	1.671860977	1.671860977	1	NA	NA	1	NA	NA	0	1	NA	1	1	1	1	0.000000329	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	50295274	C	T	-	-	-	-	-	-	51	0	0	98	0	0	49	6	12.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	10.19154907	8.289880778	8	6	2	2	0.808450931	0.710119222	8	6	3	3	0.191549069	0.289880778	0	0	1	1.837540893	1.837540893	1	NA	NA	1	NA	NA	0	1	NA	1	1	1	1	0.000000182	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	57587344	C	T	-	-	-	-	-	-	55	0	0	49	0	0	36	7	19.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7	6	5	4	2	2	1	1	NA	NA	NA	NA	NA	NA	0	0	1	2.477754386	0.825918129	3	NA	NA	1	NA	NA	0	1	NA	1	1	1	1	5.74E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	59137298	G	A	-	-	-	-	-	-	60	0	0	37	4	10.8	31	6	19.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.539137725	0.539137725	1	1.895754386	1.895754386	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.0000362	1	1.03E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	85049749	A	C	-	-	-	-	-	-	67	0	0	50	0	0	36	6	16.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0	0	1	1.798912281	1.798912281	1	NA	NA	1	NA	NA	1	1	NA	1	1	1	1	2.68E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	87962794	C	T	-	-	-	-	-	-	50	0	0	57	0	0	45	8	17.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0	0	1	1.917403509	0.958701754	2	NA	NA	1	NA	NA	1	1	NA	1	1	1	1	7.14E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	60966983	A	G	-	-	-	-	-	-	61	0	0	35	6	17.1	38	4	10.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.853634731	0.853634731	1	1.026052632	1.026052632	1	NA	NA	1	NA	NA	1	4	NA	1	1	2.24E-08	1	0.0000403	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	88869140	G	C	ZNF804B	CCDS5613.1	r.?	-	-	intronic	70	0	0	45	0	0	40	4	10	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0	0	1	1.077192982	1.077192982	1	NA	NA	1	NA	NA	1	1	NA	1	1	1	1	0.0000495	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	93440550	C	G	GNGT1	ENST00000455502	r.?	-	-	intronic	37	0	0	51	0	0	55	5	9.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0	0	1	0.980245614	0.980245614	1	NA	NA	1	NA	NA	1	1	NA	1	1	1	1	0.00000883	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	103886001	T	A	-	-	-	-	-	-	40	0	0	67	0	0	46	4	8.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0	0	1	0.937157895	0.937157895	1	NA	NA	1	NA	NA	1	1	NA	1	1	1	1	0.0000862	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	61856319	A	T	CDH8	CCDS10802.1	r.?	-	-	intronic	44	0	0	36	0	0	28	3	10.7	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	4	5.626372055	2	3	2	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	0	NA	0	1.326618301	1.326618301	1	NA	NA	0	NA	NA	1	NA	NA	1	1	1	1	0.000372895	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	116274498	G	C	-	-	-	-	-	-	50	0	0	50	0	0	42	6	14.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0	0	1	1.540385965	1.540385965	1	NA	NA	1	NA	NA	1	1	NA	1	1	1	1	7.02E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	63089481	T	A	-	-	-	-	-	-	47	0	0	28	0	0	27	3	11.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0	0	1	1.042614236	1.042614236	1	NA	NA	1	NA	NA	0	1	NA	1	1	1	1	0.000334187	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	126807724	A	C	GRM8	CCDS5794.1	r.?	-	-	intronic	46	0	0	66	0	0	38	4	10.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0	0	1	1.131052632	1.131052632	1	NA	NA	1	NA	NA	1	1	NA	1	1	1	1	0.0000403	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	20139306	C	A	LZTS1	CCDS6015.1	r.?	-	-	intronic	45	0	0	32	0	0	31	6	19.4	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	1	2.620991218	1	2	0	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0	NA	0	1.822226682	1.822226682	1	NA	NA	0	NA	NA	0	NA	NA	1	1	1	1	1.03E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	64583323	T	A	EGR2	CCDS7267.1	r.?	-	-	upstream	55	0	0	52	0	0	44	4	9.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.297222263	4	2	2	2	2	0.702777737	1	3	NA	2	NA	0.297222263	NA	0	0	1	0.980245614	0.980245614	1	NA	NA	1	NA	NA	1	1	NA	1	1	1	1	0.0000723	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	65389487	T	A	-	-	-	-	-	-	51	0	0	59	0	0	23	3	13	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0	0	1	1.221079735	1.221079735	1	NA	NA	1	NA	NA	0	1	NA	1	1	1	1	0.000205387	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	152137710	A	C	BAGE3	CCDS5931.1	r.?	-	-	upstream	32	0	0	31	14	45.2	32	5	15.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	1.804391218	0.902195609	2	1.368421053	1.368421053	1	NA	NA	1	NA	NA	1	4	NA	1	1	1.49E-24	1	0.000000562	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	65849564	C	T	-	-	-	-	-	-	56	0	0	41	0	0	30	4	13.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0	0	1	1.249258499	1.249258499	1	NA	NA	1	NA	NA	0	1	NA	1	1	1	1	0.0000154	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	35577278	G	T	UNC5D	CCDS6093.2	r.?	-	-	intronic	59	0	0	27	0	0	27	4	14.8	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	1	2.620991218	1	2	0	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0	NA	0	1.390152314	1.390152314	1	NA	NA	0	NA	NA	0	NA	NA	1	1	1	1	0.00001	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	66878538	T	A	PCDH9	CCDS9444.1	r.4098a>u	c.?	p.?	3'UTR variant	48	0	0	40	0	0	26	3	11.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0	0	1	1.23877193	1.23877193	1	NA	NA	1	NA	NA	1	1	NA	1	1	1	1	0.000298167	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	58423068	C	A	-	-	-	-	-	-	40	0	0	43	0	0	39	4	10.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0	0	1	0.967470867	0.967470867	1	NA	NA	1	NA	NA	0	1	NA	1	1	1	1	0.0000447	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	67369922	G	A	WDR78	CCDS635.1	r.?	-	-	intronic	48	0	0	34	4	11.8	29	6	20.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	0.589057884	0.589057884	1	2.436789474	0.812263158	3	NA	NA	0	NA	NA	1	4	NA	1	1	0.0000257	1	6.72E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	69025171	C	T	C3orf64	CCDS2908.1	r.3335g>a	c.?	p.?	3'UTR variant	50	0	0	32	0	0	29	4	13.8	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	0	NA	0	1.624526316	1.624526316	1	NA	NA	0	NA	NA	1	NA	NA	1	1	1	1	0.0000134	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	60470248	C	A	-	-	-	-	-	-	53	0	0	50	0	0	42	8	19	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0	0	1	1.784654998	1.784654998	1	NA	NA	1	NA	NA	0	1	NA	1	1	1	1	3.96E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	72678441	C	T	-	-	-	-	-	-	21	0	0	26	0	0	18	4	22.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0	0	1	2.085228471	2.085228471	1	NA	NA	1	NA	NA	0	1	NA	1	1	1	1	0.00000181	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	69447969	C	A	-	-	-	-	-	-	52	0	0	28	3	10.7	29	4	13.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	0.534145709	0.534145709	1	1.253777369	1.253777369	1	NA	NA	1	NA	NA	0	4	NA	1	1	0.000372895	1	0.0000134	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	90047847	C	T	-	-	-	-	-	-	42	0	0	40	3	7.5	36	5	13.9	2	0	0	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0.374401198	0.374401198	1	1.305616025	1.305616025	1	NA	NA	1	NA	NA	0	4	NA	1	1	0.001075403	1	0.00000104	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	69714172	T	G	-	-	-	-	-	-	51	0	0	44	3	6.8	30	4	13.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.407457086	0.407457086	1	1.432666667	1.432666667	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.00142027	1	0.0000154	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	81881191	C	T	PAG1	CCDS6227.1	r.9598g>a	c.?	p.?	3'UTR variant	43	0	0	36	0	0	34	6	17.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0	0	1	1.653154103	1.653154103	1	NA	NA	1	NA	NA	0	1	NA	1	1	1	1	1.86E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	70852781	G	A	-	-	-	-	-	-	59	0	0	41	0	0	31	4	12.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0	0	1	1.131578947	1.131578947	1	NA	NA	1	NA	NA	1	1	NA	1	1	1	1	0.0000177	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	82586886	G	T	IMPA1	CCDS47883.1	r.?	-	-	intronic	47	0	0	44	0	0	31	7	22.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0	0	1	2.122800156	1.061400078	2	NA	NA	1	NA	NA	0	1	NA	1	1	1	1	1.85E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	71346631	T	G	RGAG4	ENST00000479991	r.?	-	-	downstream	36	0	0	30	0	0	25	3	12	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.566189755	2	1	1	1	1	0.433810245	NA	2	NA	1	NA	0.566189755	0	0	1	1.120574349	1.120574349	1	NA	NA	1	NA	NA	0	1	NA	1	1	1	1	0.00026475	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	71421945	G	T	-	-	-	-	-	-	41	0	0	34	2	5.9	39	4	10.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0.294528942	0.294528942	1	1.006508772	1.006508772	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.012612579	1	0.0000447	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	89898865	G	T	-	-	-	-	-	-	42	0	0	46	0	0	42	4	9.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0	0	1	0.892327499	0.892327499	1	NA	NA	1	NA	NA	0	1	NA	1	1	1	1	0.0000601	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	91090558	T	A	CALB1	CCDS6251.1	r.?	-	-	intronic	46	0	0	45	0	0	46	5	10.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0	0	1	1.023828394	1.023828394	1	NA	NA	1	NA	NA	0	1	NA	1	1	1	1	0.00000361	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	93182406	C	A	-	-	-	-	-	-	43	0	0	38	0	0	35	5	14.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0	0	1	1.343187709	1.343187709	1	NA	NA	1	NA	NA	0	1	NA	1	1	1	1	0.000000895	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	108101665	G	C	-	-	-	-	-	-	51	0	0	43	0	0	32	5	15.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0	0	1	1.465295683	1.465295683	1	NA	NA	1	NA	NA	0	1	NA	1	1	1	1	0.000000562	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	72970018	C	T	EXOC6B	CCDS46333.1	r.?	-	-	intronic	39	0	0	58	8	13.8	47	5	10.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.826898204	0.826898204	1	1.141824561	1.141824561	1	NA	NA	1	NA	NA	1	4	NA	1	1	5.99E-10	1	0.00000402	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	112967347	C	A	-	-	-	-	-	-	53	0	0	58	0	0	40	7	17.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.858200392	2.620991218	2	2	1	0	0.141799608	0.379008782	2	2	2	1	0.858200392	0.620991218	0	0	1	1.643761182	1.643761182	1	NA	NA	1	NA	NA	0	1	NA	1	1	1	1	1.26E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	116659099	C	G	TRPS1	CCDS6318.2	r.?	-	-	intronic	52	0	0	43	0	0	41	4	9.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0	0	1	0.920506262	0.920506262	1	NA	NA	1	NA	NA	0	1	NA	1	1	1	1	0.0000546	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	74497013	T	G	ANKRD31	CCDS47233.1	r.?	-	-	intronic	51	0	0	37	0	0	35	3	8.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0	0	1	0.926385965	0.926385965	1	NA	NA	1	NA	NA	1	1	NA	1	1	1	1	0.000725791	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	74758851	A	C	-	-	-	-	-	-	53	0	0	43	0	0	31	3	9.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0	0	1	1.044877193	1.044877193	1	NA	NA	1	NA	NA	1	1	NA	1	1	1	1	0.000505952	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	29525890	G	C	-	-	-	-	-	-	26	0	0	30	0	0	29	4	13.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1	1	1	1	0	0	1	1	NA	NA	NA	NA	NA	NA	0	0	1	1.072526316	1.072526316	1	NA	NA	1	NA	NA	1	1	NA	1	1	1	1	0.0000134	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	76084321	G	C	-	-	-	-	-	-	17	0	0	63	2	3.2	28	4	14.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6.377205361	6	3	4	3	2	0.622794639	1	4	NA	3	NA	0.377205361	NA	0.267815083	0.709998081	0.377205361	1.826385965	1.826385965	1	NA	NA	0	NA	NA	0	4	NA	1	1	0.03993132	1	0.0000116	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	36571428	C	G	MELK	CCDS6606.1	r.?	-	-	upstream	44	0	0	39	0	0	15	3	20	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3.133128081	5	2	3	1	2	0.866871919	1	2	NA	2	NA	0.133128081	NA	0	NA	0	2.354385965	2.354385965	1	NA	NA	0	NA	NA	1	NA	NA	1	1	1	1	0.0000544	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	76471079	G	A	HNF4G	CCDS6220.2	r.1024g>a	c.900G>A	p.R300R	silent	44	0	0	39	3	7.7	29	5	17.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0.38438523	0.38438523	1	1.615582419	1.615582419	1	NA	NA	1	NA	NA	0	4	NA	1	1	0.000998458	1	0.000000336	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	76532818	T	C	ROBO2	ENST00000487694	r.?	-	-	intronic	48	0	0	43	3	7	38	5	13.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	0.374230414	1.056751621	0.354132803	1.553894737	1.553894737	1	NA	NA	0	NA	NA	1	4	NA	1	1	0.001328364	1	0.00000137	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	81149988	G	T	-	-	-	-	-	-	51	0	0	25	0	0	31	5	16.1	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	0	NA	0	1.734280702	1.734280702	1	NA	NA	0	NA	NA	1	NA	NA	1	1	1	1	0.000000476	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	86231717	T	A	-	-	-	-	-	-	40	0	0	37	0	0	25	4	16	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	0	NA	0	1.723508772	1.723508772	1	NA	NA	0	NA	NA	1	NA	NA	1	1	1	1	0.00000727	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	103631650	A	T	-	-	-	-	-	-	59	0	0	37	0	0	33	7	21.2	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	0	NA	0	2.283649123	1.141824561	2	NA	NA	0	NA	NA	1	NA	NA	1	1	1	1	2.98E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	110811811	T	G	-	-	-	-	-	-	44	0	0	31	0	0	34	6	17.6	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	0	NA	0	1.895859649	1.895859649	1	NA	NA	0	NA	NA	1	NA	NA	1	1	1	1	1.86E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	121065468	C	G	-	-	-	-	-	-	49	0	0	28	0	0	42	4	9.5	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	0	NA	0	1.023333333	1.023333333	1	NA	NA	0	NA	NA	1	NA	NA	1	1	1	1	0.0000601	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	122114528	A	C	DBC1	CCDS6822.1	r.?	-	-	intronic	61	0	0	33	0	0	37	4	10.8	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	0	NA	0	1.163368421	1.163368421	1	NA	NA	0	NA	NA	1	NA	NA	1	1	1	1	0.0000362	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	125801212	G	C	RABGAP1	CCDS6848.2	r.?	-	-	intronic	36	0	0	26	0	0	32	6	18.8	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	0	NA	0	2.025122807	2.025122807	1	NA	NA	0	NA	NA	1	NA	NA	1	1	1	1	1.27E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	81394765	C	A	C4orf22	CCDS3587.1	r.?	-	-	intronic	41	0	0	40	12	30	27	4	14.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	1.49760479	1.49760479	1	1.344630801	1.344630801	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.20E-18	1	0.00001	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	136808826	C	T	VAV2	CCDS48053.1	r.?	-	-	intronic	9	0	0	28	0	0	23	4	17.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	8	6.675936267	5	3	3	3	1	0.324063733	NA	4	NA	3	NA	0.675936267	0	0	1	2.3399287	2.3399287	1	NA	NA	1	NA	NA	0	4	NA	1	1	1	1	0.00000513	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	81645554	A	C	-	-	-	-	-	-	52	0	0	49	0	0	26	3	11.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0	0	1	1.23877193	1.23877193	1	NA	NA	1	NA	NA	1	1	NA	1	1	1	1	0.000298167	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	44900044	G	T	-	-	-	-	-	-	29	0	0	28	0	0	23	5	21.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.297222263	4	2	2	2	2	0.702777737	1	3	NA	2	NA	0.297222263	NA	0	0	1	2.337508772	1.168754386	2	NA	NA	0	NA	NA	1	1	NA	1	1	1	1	9.75E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	15329223	G	T	-	-	-	-	-	-	34	0	0	39	0	0	27	4	14.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0	0	1	1.446245614	1.446245614	1	NA	NA	1	NA	NA	1	1	NA	1	1	1	1	0.00001	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	82272311	G	A	-	-	-	-	-	-	52	0	0	41	5	12.2	23	5	21.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	0.609025948	0.609025948	1	1.971519486	1.971519486	1	NA	NA	1	NA	NA	0	4	NA	1	1	0.00000202	1	9.75E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	59561195	T	C	-	-	-	-	-	-	47	0	0	61	0	0	31	4	12.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.297222263	4	2	2	2	2	0.702777737	1	3	NA	2	NA	0.297222263	NA	0	0	1	1.389578947	1.389578947	1	NA	NA	1	NA	NA	1	1	NA	1	1	1	1	0.0000177	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	83141379	T	A	-	-	-	-	-	-	46	0	0	47	0	0	33	3	9.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5	5	3	3	2	2	1	1	NA	NA	NA	NA	NA	NA	0	0	1	1.071245614	1.071245614	1	NA	NA	1	NA	NA	1	1	NA	1	1	1	1	0.000609557	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	105532095	T	A	SH3PXD2A	CCDS31278.1	r.?	-	-	intronic	12	0	0	20	0	0	11	3	27.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0	0	1	2.394736842	2.394736842	1	NA	NA	1	NA	NA	1	1	NA	1	1	1	1	0.00002	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	107987213	C	T	-	-	-	-	-	-	56	0	0	48	0	0	39	5	12.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0	0	1	1.122807018	1.122807018	1	NA	NA	1	NA	NA	1	1	NA	1	1	1	1	0.00000156	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	10	108308076	G	C	-	-	-	-	-	-	47	0	0	47	0	0	25	4	16	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0	0	1	1.403508772	1.403508772	1	NA	NA	1	NA	NA	1	1	NA	1	1	1	1	0.00000727	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	12115801	T	C	-	-	-	-	-	-	45	0	0	54	0	0	35	6	17.1	0	0	NA	2	0	0	0	0	NA	1	TRUE	FALSE	4	3	2	2	2	1	1	1	NA	NA	NA	NA	NA	NA	0	0	1	1.671	1.671	1	0	0	1	NA	NA	0	1	NA	1	1	1	1	2.24E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	22197003	C	T	-	-	-	-	-	-	37	0	0	31	0	0	35	5	14.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0	0	1	1.397385965	1.397385965	1	NA	NA	1	NA	NA	1	1	NA	1	1	1	1	0.000000895	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	27030881	G	C	-	-	-	-	-	-	50	0	0	35	0	0	44	7	15.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0	0	1	1.553736842	1.553736842	1	NA	NA	1	NA	NA	1	1	NA	1	1	1	1	2.55E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	85629551	G	T	PDE8A	CCDS10336.1	r.?	-	-	intronic	42	0	0	43	0	0	18	3	16.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3.293619843	2	2	1	1	1	0.706380157	NA	3	NA	1	NA	0.293619843	0	0	1	1.680946794	1.680946794	1	NA	NA	1	NA	NA	0	1	NA	1	1	1	1	0.0000964	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	88144199	C	G	-	-	-	-	-	-	44	0	0	40	0	0	33	4	12.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.673496181	2	2	1	0	1	0.326503819	NA	2	NA	1	NA	0.673496181	0	0	1	1.142896547	1.142896547	1	NA	NA	1	NA	NA	0	1	NA	1	1	1	1	0.0000228	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	127554549	G	C	-	-	-	-	-	-	41	0	0	56	0	0	44	5	11.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	4	4	0	0	1	1	NA	NA	NA	NA	NA	NA	0	0	1	1.228	1.228	1	NA	NA	1	NA	NA	1	1	NA	1	1	1	1	0.00000288	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	87151853	A	T	-	-	-	-	-	-	43	0	0	56	4	7.1	41	4	9.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	2.673496181	2	2	2	0	1	0.326503819	NA	2	NA	1	NA	0.673496181	0.425433134	0.425433134	1	0.925651749	0.925651749	1	NA	NA	1	NA	NA	0	4	NA	1	1	0.000186538	1	0.0000546	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	13677536	C	T	-	-	-	-	-	-	39	0	0	35	0	0	28	5	17.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0	0	1	1.749175439	1.749175439	1	NA	NA	1	NA	NA	1	1	NA	1	1	1	1	0.000000279	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	19359110	C	G	PLEKHA5	CCDS44840.1	r.?	-	-	intronic	40	0	0	46	0	0	39	5	12.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0	0	1	1.250807018	1.250807018	1	NA	NA	1	NA	NA	1	1	NA	1	1	1	1	0.00000156	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	73484188	T	A	-	-	-	-	-	-	53	0	0	46	0	0	29	3	10.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0	0	1	1.006508772	1.006508772	1	NA	NA	1	NA	NA	1	1	NA	1	1	1	1	0.000414371	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	86352321	G	T	-	-	-	-	-	-	40	0	0	37	0	0	41	5	12.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0	0	1	1.192175439	1.192175439	1	NA	NA	1	NA	NA	1	1	NA	1	1	1	1	0.00000202	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	88047349	A	T	-	-	-	-	-	-	60	0	0	54	0	0	35	4	11.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3	2	2	1	1	1	1	NA	NA	NA	NA	NA	NA	0	0	1	1.114	1.114	1	NA	NA	1	NA	NA	1	1	NA	1	1	1	1	0.0000289	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	91763105	G	C	-	-	-	-	-	-	44	0	0	38	0	0	24	4	16.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.357713288	3	2	2	1	1	0.642286712	1	3	NA	1	NA	0.357713288	NA	0	0	1	1.631912281	1.631912281	1	NA	NA	0	NA	NA	1	1	NA	1	1	1	1	0.00000613	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	124408321	A	G	DNAH10	CCDS9255.2	r.11189a>g	c.11164A>G	p.R3722G	missense	30	0	0	48	1	2.1	17	4	23.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	3	4	2	2	1	1	1	NA	NA	NA	NA	NA	NA	0.167832335	0.167832335	1	2.296403509	2.296403509	1	NA	NA	1	NA	NA	0	4	NA	1	1	0.213845552	1	0.00000141	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	23087767	G	A	-	-	-	-	-	-	51	0	0	32	0	0	38	5	13.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0	0	1	1.157894737	1.157894737	1	NA	NA	1	NA	NA	1	1	NA	1	1	1	1	0.00000137	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	91629419	C	G	PCDH11X	CCDS14461.1	r.?	-	-	intronic	22	0	0	24	10	41.7	26	7	26.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1.44088429	3	1	2	0	1	0.55911571	1	1	NA	1	NA	0.44088429	NA	1.431519408	1.431519408	1	2.628649123	1.314324561	2	NA	NA	0	NA	NA	1	4	NA	1	1	1.80E-17	1	4.73E-11	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	31962397	C	A	-	-	-	-	-	-	47	0	0	40	0	0	33	4	12.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0	0	1	1.061403509	1.061403509	1	NA	NA	1	NA	NA	1	1	NA	1	1	1	1	0.0000228	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	49231309	C	G	-	-	-	-	-	-	48	0	0	50	0	0	39	4	10.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0	0	1	1.109508772	1.109508772	1	NA	NA	1	NA	NA	1	1	NA	1	1	1	1	0.0000447	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	56029160	G	A	-	-	-	-	-	-	49	0	0	50	0	0	38	6	15.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0	0	1	1.701964912	1.701964912	1	NA	NA	1	NA	NA	1	1	NA	1	1	1	1	3.76E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	94368185	C	T	MCTP1	CCDS47247.1	r.?	-	-	intronic	46	0	0	32	4	12.5	35	5	14.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.749001996	0.749001996	1	1.540385965	1.540385965	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.0000201	1	0.000000895	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	94705266	T	A	-	-	-	-	-	-	49	0	0	40	0	0	26	3	11.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0	0	1	1.00877193	1.00877193	1	NA	NA	1	NA	NA	1	1	NA	1	1	1	1	0.000298167	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	95691595	T	A	BMPR1B	ENST00000515059	r.?	-	-	intronic	53	0	0	43	3	7	31	6	19.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	0.349441118	0.349441118	1	1.762556591	1.762556591	1	NA	NA	1	NA	NA	0	4	NA	1	1	0.001328364	1	1.03E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	60152835	C	A	-	-	-	-	-	-	51	0	0	55	0	0	36	5	13.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0	0	1	1.497298246	1.497298246	1	NA	NA	1	NA	NA	1	1	NA	1	1	1	1	0.00000104	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	97531679	A	G	-	-	-	-	-	-	27	0	0	61	0	0	37	4	10.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0	0	1	1.163368421	1.163368421	1	NA	NA	1	NA	NA	1	1	NA	1	1	1	1	0.0000362	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	98332216	C	G	AC027708.1	ENST00000503768	r.?	-	-	intronic	41	0	0	37	0	0	24	3	12.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3.293619843	2	2	1	1	1	0.706380157	NA	3	NA	1	NA	0.293619843	0	0	1	1.258193708	1.258193708	1	NA	NA	1	NA	NA	1	1	NA	1	1	1	1	0.000233853	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	86705300	C	T	-	-	-	-	-	-	52	0	0	59	0	0	37	6	16.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0	0	1	1.745052632	1.745052632	1	NA	NA	1	NA	NA	1	1	NA	1	1	1	1	3.18E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	91627433	C	G	-	-	-	-	-	-	53	0	0	55	0	0	38	4	10.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0	0	1	1.131052632	1.131052632	1	NA	NA	1	NA	NA	1	1	NA	1	1	1	1	0.0000403	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	99800955	A	C	ENSG00000104375	CCDS47900.1	r.?	-	-	intronic	41	0	0	34	3	8.8	33	4	12.1	2	0	0	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0.439297405	0.439297405	1	1.136543446	1.136543446	1	NA	NA	1	NA	NA	0	4	NA	1	1	0.000666058	1	0.0000228	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	27060183	A	T	ENSG00000248163	CCDS32061.1	r.?	-	-	intronic	53	0	0	28	0	0	31	4	12.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0	0	1	1.131578947	1.131578947	1	NA	NA	1	NA	NA	1	1	NA	1	1	1	1	0.0000177	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	44389079	C	T	-	-	-	-	-	-	47	0	0	32	1	3.1	24	5	20.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.123752495	0.123752495	1	1.824561404	1.824561404	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.14819814	1	0.000000123	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	52001396	C	A	FRMD6	CCDS9704.1	r.?	-	-	intronic	58	0	0	36	0	0	41	4	9.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0	0	1	0.859649123	0.859649123	1	NA	NA	1	NA	NA	1	1	NA	1	1	1	1	0.0000546	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	101970544	C	G	PCSK6	ENST00000348070	r.?	-	-	intronic	35	0	0	30	3	10	26	3	11.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3.293619843	2	2	1	1	1	0.706380157	NA	3	NA	1	NA	0.293619843	0.499201597	0.499201597	1	1.157538212	1.157538212	1	NA	NA	0	NA	NA	1	4	NA	1	1	0.000458697	1	0.000298167	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	102374529	A	G	-	-	-	-	-	-	53	0	0	49	0	0	45	4	8.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.357713288	3	2	2	1	1	0.642286712	1	3	NA	1	NA	0.357713288	NA	0	0	1	0.869701754	0.869701754	1	NA	NA	0	NA	NA	0	1	NA	1	1	1	1	0.0000791	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	102874610	T	G	-	-	-	-	-	-	41	0	0	33	2	6.1	24	4	16.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	0.326115075	0.326115075	1	1.965912281	1.965912281	1	NA	NA	0	NA	NA	1	4	NA	1	1	0.011909843	1	0.00000613	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	95774001	G	C	CLMN	CCDS9933.1	r.?	-	-	intronic	25	0	0	34	0	0	32	5	15.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.149838816	3	3	3	0	0	0.850161184	1	3	NA	1	NA	0.149838816	NA	0	0	1	1.524421053	1.524421053	1	NA	NA	1	NA	NA	0	1	NA	1	1	1	1	0.000000562	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	99322179	C	T	-	-	-	-	-	-	33	0	0	20	0	0	33	5	15.2	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3.149838816	5.306384543	3	5	0	0	0.850161184	0.693615457	3	5	1	1	0.149838816	0.306384543	0	NA	0	1.835903784	1.835903784	1	NA	NA	0	NA	NA	0	NA	NA	1	1	1	1	0.00000066	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	22457024	G	A	-	-	-	-	-	-	52	0	0	52	0	0	43	6	14	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	6.403731855	5	4	4	2	1	0.596268145	1	5	NA	2	NA	0.403731855	NA	0	NA	0	1.648070175	1.648070175	1	NA	NA	1	NA	NA	0	NA	NA	1	1	1	1	8.13E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	104415623	A	T	GRIN3A	CCDS6758.1	r.?	-	-	intronic	57	0	0	37	0	0	36	3	8.3	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	0	NA	0	0.894070175	0.894070175	1	NA	NA	0	NA	NA	1	NA	NA	1	1	1	1	0.000788827	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	39163716	G	A	-	-	-	-	-	-	41	0	0	27	0	0	17	4	23.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.598654474	2	1	1	1	1	0.401345526	NA	2	NA	1	NA	0.598654474	0	0	1	2.20208731	2.20208731	1	NA	NA	1	NA	NA	0	1	NA	1	1	1	1	0.00000141	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	62029858	C	T	-	-	-	-	-	-	63	0	0	53	0	0	45	6	13.3	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	3.293619843	2	2	1	1	1	0.706380157	NA	3	NA	1	NA	0.293619843	0	NA	0	1.338718106	1.338718106	1	NA	NA	1	NA	NA	1	NA	NA	1	1	1	1	0.000000108	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	71326815	G	T	LRRC49	CCDS32282.1	r.?	-	-	intronic	53	0	0	38	0	0	35	4	11.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3.293619843	2	2	1	1	1	0.706380157	NA	3	NA	1	NA	0.293619843	0	0	1	1.147472662	1.147472662	1	NA	NA	0	NA	NA	1	1	NA	1	1	1	1	0.0000289	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	72996220	C	G	BBS4	CCDS10246.1	r.?	-	-	intronic	45	0	0	34	0	0	46	4	8.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3.293619843	2	2	1	1	1	0.706380157	NA	3	NA	1	NA	0.293619843	0	0	1	0.875702821	0.875702821	1	NA	NA	0	NA	NA	1	1	NA	1	1	1	1	0.0000862	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	15	94293889	C	T	-	-	-	-	-	-	43	0	0	51	0	0	31	6	19.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	3.293619843	2	2	1	1	1	0.706380157	NA	3	NA	1	NA	0.293619843	0	0	1	1.952716635	1.952716635	1	NA	NA	0	NA	NA	1	1	NA	1	1	1	1	1.03E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	10455948	C	G	-	-	-	-	-	-	27	0	0	41	0	0	38	6	15.8	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	4	5.626372055	2	3	2	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	0	NA	0	1.958931697	1.958931697	1	NA	NA	0	NA	NA	1	NA	NA	1	1	1	1	3.76E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	107258402	C	G	-	-	-	-	-	-	56	0	0	57	0	0	25	3	12	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0	0	1	1.292631579	1.292631579	1	NA	NA	1	NA	NA	1	1	NA	1	1	1	1	0.00026475	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	107307270	G	A	-	-	-	-	-	-	16	0	0	53	0	0	29	4	13.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	0	0	1	1.253777369	1.253777369	1	NA	NA	1	NA	NA	0	1	NA	1	1	1	1	0.0000134	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	107581938	T	C	OXR1	CCDS47909.1	r.?	-	-	intronic	52	0	0	48	0	0	43	4	9.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0	0	1	0.873541657	0.873541657	1	NA	NA	1	NA	NA	0	1	NA	1	1	1	1	0.000066	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	107697802	G	T	-	-	-	-	-	-	50	0	0	47	8	17	39	4	10.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.313413428	2	1	1	1	1	0.686586572	NA	2	NA	1	NA	0.313413428	0.848642715	0.848642715	1	0.935790355	0.935790355	1	NA	NA	1	NA	NA	0	4	NA	1	1	1.03E-10	1	0.0000447	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	14667731	C	G	PARN	CCDS45419.1	r.?	-	-	intronic	41	0	0	42	0	0	53	5	9.4	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	4.499724906	5.626372055	2	3	2	2	0.500275094	0.373627945	3	3	2	3	0.499724906	0.626372055	0	NA	0	1.165440377	1.165440377	1	NA	NA	0	NA	NA	0	NA	NA	1	1	1	1	0.00000734	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	19420985	C	T	TMC5	CCDS45431.1	r.?	-	-	upstream	13	0	0	32	0	0	30	5	16.7	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	4.499724906	5.626372055	2	3	2	2	0.500275094	0.373627945	3	3	2	3	0.499724906	0.626372055	0	NA	0	2.070516414	2.070516414	1	NA	NA	0	NA	NA	1	NA	NA	1	1	1	1	0.000000401	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	92204311	T	C	GPC5	CCDS9468.1	r.?	-	-	intronic	49	0	0	48	0	0	42	4	9.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0	0	1	1.023333333	1.023333333	1	NA	NA	1	NA	NA	1	1	NA	1	1	1	1	0.0000601	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	21685440	C	A	OTOA	CCDS10600.2	r.?	-	-	upstream	26	0	0	45	0	0	53	5	9.4	0	0	NA	0	0	NA	2	0	0	1	FALSE	FALSE	4.499724906	5.626372055	2	3	2	2	0.500275094	0.373627945	3	3	2	3	0.499724906	0.626372055	0	NA	0	1.165440377	1.165440377	1	NA	NA	0	0	NA	0	NA	NA	1	1	1	1	0.00000734	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	108715991	C	G	LACE1	CCDS5067.1	r.?	-	-	intronic	40	0	0	27	0	0	27	3	11.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0	0	1	0.973684211	0.973684211	1	NA	NA	1	NA	NA	1	1	NA	1	1	1	1	0.000334187	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	12	109855780	C	T	-	-	-	-	-	-	16	0	0	42	0	0	19	4	21.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.357713288	3	2	2	1	1	0.642286712	1	3	NA	1	NA	0.357713288	NA	0	0	1	2.061877193	2.061877193	1	NA	NA	1	NA	NA	0	1	NA	1	1	1	1	0.00000228	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	13	110730075	A	C	-	-	-	-	-	-	46	0	0	59	0	0	35	3	8.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0	0	1	0.926385965	0.926385965	1	NA	NA	1	NA	NA	1	1	NA	1	1	1	1	0.000725791	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	24281289	G	A	CACNG3	CCDS10620.1	r.?	-	-	intronic	32	0	0	34	1	2.9	37	7	18.9	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	4.499724906	5.626372055	2	3	2	2	0.500275094	0.373627945	3	3	2	3	0.499724906	0.626372055	0.188260485	NA	0	2.343279055	0.987214134	2.373627945	NA	NA	0	NA	NA	1	NA	NA	1	1	0.156694864	1	7.05E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	110896696	A	T	PVRL3	ENST00000493615	r.?	-	-	intronic	51	0	0	39	2	5.1	35	4	11.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.354132803	5	2	3	1	2	0.645867197	1	2	NA	2	NA	0.354132803	NA	0.272653587	0.769919038	0.354132803	1.342	1.342	1	NA	NA	0	NA	NA	1	4	NA	1	1	0.016387522	1	0.0000289	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	111513922	A	G	-	-	-	-	-	-	66	0	0	39	0	0	38	4	10.5	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	0	NA	0	1.236052632	1.236052632	1	NA	NA	0	NA	NA	1	NA	NA	1	1	1	1	0.0000403	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	53382758	T	C	FERMT2	CCDS45107.1	r.?	-	-	intronic	41	0	0	30	3	10	28	5	17.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.399201597	0.399201597	1	1.570175439	1.570175439	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.000458697	1	0.000000279	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	113128269	C	T	RGPD8	CCDS46394.1	r.?	-	-	intronic	12	1	8.3	15	3	20	13	5	38.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.128496294	4	2	2	2	2	0.871503706	1	3	NA	2	NA	0.128496294	NA	1.224102452	1.224102452	1	4.147192982	2.073596491	2	NA	NA	1	NA	NA	1	4	NA	0.058377193	1	0.0000544	1	3.89E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	113740506	C	T	CSMD3	CCDS6315.1	r.?	-	-	intronic	42	0	0	32	4	12.5	43	14	32.6	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0.624001996	0.624001996	1	3.06209226	1.53104613	2	NA	NA	1	NA	NA	0	4	NA	1	1	0.0000201	1	4.18E-22	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	14	91734801	G	A	CCDC88C	CCDS45151.1	r.?	-	-	downstream	50	0	0	40	12	30	30	8	26.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.149838816	3	3	3	0	0	0.850161184	1	3	NA	1	NA	0.149838816	NA	1.542556435	1.542556435	1	2.609105263	0.869701754	3	NA	NA	0	NA	NA	1	4	NA	1	1	1.20E-18	1	2.07E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	27661160	G	T	KIAA0556	CCDS32415.1	r.?	-	-	intronic	38	0	0	39	0	0	34	5	14.7	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	4.499724906	5.626372055	2	3	2	2	0.500275094	0.373627945	3	3	2	3	0.499724906	0.626372055	0	NA	0	1.822550376	1.822550376	1	NA	NA	0	NA	NA	0	NA	NA	1	1	1	1	0.000000771	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	61542198	G	T	-	-	-	-	-	-	36	0	0	37	0	0	42	4	9.5	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	4	5.626372055	2	3	2	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	0	NA	0	1.177838679	1.177838679	1	NA	NA	0	NA	NA	1	NA	NA	1	1	1	1	0.0000601	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	63548626	T	G	-	-	-	-	-	-	51	0	0	57	0	0	44	4	9.1	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	4	5.626372055	2	3	2	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	0	NA	0	1.128245471	1.128245471	1	NA	NA	0	NA	NA	1	NA	NA	1	1	1	1	0.0000723	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	72923638	G	A	ZFHX3	CCDS10908.1	r.4113c>u	c.3440C>T	p.T1147M	missense	23	0	0	46	0	0	37	5	13.5	0	0	NA	1	0	0	0	0	NA	1	FALSE	FALSE	4	5.626372055	2	3	2	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	0	NA	0	1.673770754	1.673770754	1	0	NA	0	NA	NA	1	NA	NA	1	1	1	1	0.00000119	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	76006199	T	A	-	-	-	-	-	-	42	0	0	48	0	0	30	4	13.3	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	4	5.626372055	2	3	2	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	0	NA	0	1.64897415	1.64897415	1	NA	NA	0	NA	NA	0	NA	NA	1	1	1	1	0.0000154	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	76939904	G	C	-	-	-	-	-	-	62	0	0	60	0	0	40	4	10	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	4	5.626372055	2	3	2	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	0	NA	0	1.239830188	1.239830188	1	NA	NA	0	NA	NA	0	NA	NA	1	1	1	1	0.0000495	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	119979945	T	A	SYNPO2	CCDS34054.1	r.4838u>a	c.?	p.?	3'UTR variant	39	0	0	42	5	11.9	42	5	11.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.792797466	3.272960587	2	2	1	1	0.207202534	0.727039413	3	3	1	1	0.792797466	0.272960587	0.688392799	0.688392799	1	1.195341959	1.195341959	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.00000228	1	0.00000228	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	17	997602	A	T	ABR	CCDS10999.1	r.?	-	-	intronic	21	0	0	26	0	0	21	3	14.3	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	2	3.601202326	2	3	0	0	1	0.398797674	NA	3	NA	1	NA	0.601202326	0	NA	0	1.483357898	1.483357898	1	NA	NA	0	NA	NA	1	NA	NA	1	1	1	1	0.000155401	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	121721647	G	A	-	-	-	-	-	-	46	0	0	32	5	15.6	33	8	24.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	4	1	3	1	1	1	1	NA	NA	NA	NA	NA	NA	0.622754491	0.622754491	1	2.606807018	0.868935673	3	NA	NA	0	NA	NA	1	4	NA	1	1	0.000000562	1	4.85E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	16	3946436	G	A	-	-	-	-	-	-	29	0	0	48	4	8.3	50	9	18	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	5.626372055	2	3	2	2	1	0.373627945	NA	3	NA	3	NA	0.626372055	0.497337325	0.497337325	1	2.231694338	0.940203937	2.373627945	NA	NA	0	NA	NA	1	4	NA	1	1	0.000102016	1	4.07E-12	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	17	5847036	G	C	-	-	-	-	-	-	45	0	0	24	0	0	29	4	13.8	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	2	3.601202326	2	3	0	0	1	0.398797674	NA	3	NA	1	NA	0.601202326	0	NA	0	1.431492237	1.431492237	1	NA	NA	0	NA	NA	0	NA	NA	1	1	1	1	0.0000134	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	7	123042709	C	G	-	-	-	-	-	-	50	0	0	35	3	8.6	32	6	18.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0.515313373	0.515313373	1	2.025122807	2.025122807	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.000725791	1	1.27E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	17	20628165	A	G	-	-	-	-	-	-	44	0	0	34	0	0	36	4	11.1	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	2	3.601202326	2	3	0	0	1	0.398797674	NA	3	NA	1	NA	0.601202326	0	NA	0	1.151417669	1.151417669	1	NA	NA	0	NA	NA	1	NA	NA	1	1	1	1	0.0000324	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	17	43123256	C	T	DCAKD	CCDS11493.1	r.?	-	-	intronic	27	0	0	25	0	0	24	4	16.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0	0	1	1.464912281	1.464912281	1	NA	NA	1	NA	NA	1	1	NA	1	1	1	1	0.00000613	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	17	58208515	G	A	-	-	-	-	-	-	42	0	0	26	0	0	22	5	22.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0	0	1	1.99122807	1.99122807	1	NA	NA	1	NA	NA	1	1	NA	1	1	1	1	7.67E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	17	72232094	A	T	TTYH2	CCDS32717.1	r.?	-	-	intronic	28	0	0	30	0	0	34	7	20.6	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	5.714370929	6.213584959	5	5	0	1	0.285629071	0.786415041	5	5	1	2	0.714370929	0.213584959	0	NA	0	2.675016045	0.960020674	2.786415041	NA	NA	0	NA	NA	1	NA	NA	1	1	1	1	3.73E-10	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	8257049	G	A	PTPRM	CCDS11840.1	r.?	-	-	intronic	59	0	0	31	0	0	33	5	15.2	2	0	0	0	0	NA	0	0	NA	1	FALSE	FALSE	2	3	2	3	0	0	1	1	NA	NA	NA	NA	NA	NA	0	NA	0	1.485333333	1.485333333	1	NA	NA	0	NA	NA	1	NA	NA	1	1	1	1	0.00000066	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	129548302	T	C	-	-	-	-	-	-	53	0	0	37	2	5.4	33	4	12.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	0.269568862	0.269568862	1	1.136543446	1.136543446	1	NA	NA	1	NA	NA	0	4	NA	1	1	0.014826063	1	0.0000228	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	24784322	T	A	-	-	-	-	-	-	50	0	0	36	0	0	25	4	16	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0	0	1	1.403508772	1.403508772	1	NA	NA	1	NA	NA	1	1	NA	1	1	1	1	0.00000727	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	11	130159807	C	G	ZBTB44	CCDS44776.1	r.?	-	-	intronic	39	0	0	51	5	9.8	50	6	12	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	4	4	0	0	1	1	NA	NA	NA	NA	NA	NA	0.587217565	0.587217565	1	1.292631579	1.292631579	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.00000606	1	0.000000206	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	40007732	A	C	-	-	-	-	-	-	51	0	0	31	0	0	35	4	11.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0	0	1	1	1	1	NA	NA	1	NA	NA	1	1	NA	1	1	1	1	0.0000289	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	130484308	G	C	SAMD3	CCDS34539.1	r.?	-	-	intronic	63	0	0	24	5	20.8	27	4	14.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0.830339321	0.830339321	1	1.298245614	1.298245614	1	NA	NA	1	NA	NA	1	4	NA	1	1	0.000000123	1	0.00001	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	132293812	T	A	-	-	-	-	-	-	53	0	0	47	0	0	25	3	12	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.277661109	2	1	1	1	1	0.722338891	NA	2	NA	1	NA	0.277661109	0	0	1	1.085950912	1.085950912	1	NA	NA	1	NA	NA	0	1	NA	1	1	1	1	0.00026475	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	46836777	T	A	DYM	CCDS11937.1	r.?	-	-	intronic	46	0	0	22	0	0	27	4	14.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0	0	1	1.298245614	1.298245614	1	NA	NA	1	NA	NA	1	1	NA	1	1	1	1	0.00001	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	50381896	G	T	DCC	CCDS11952.1	r.?	-	-	intronic	35	0	0	29	0	0	35	4	11.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0	0	1	1	1	1	NA	NA	1	NA	NA	1	1	NA	1	1	1	1	0.0000289	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	8	132649708	T	A	-	-	-	-	-	-	17	0	0	10	3	30	12	4	33.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.620991218	2	2	1	0	1	0.379008782	NA	2	NA	1	NA	0.620991218	1.49760479	1.49760479	1	3.127842707	1.563921354	2	NA	NA	1	NA	NA	0	4	NA	1	1	0.0000146	1	0.0000003	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	54642660	G	T	WDR7	CCDS11962.1	r.?	-	-	intronic	35	0	0	28	0	0	23	4	17.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0	0	1	1.526315789	1.526315789	1	NA	NA	1	NA	NA	1	1	NA	1	1	1	1	0.00000513	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	18	57991856	T	A	-	-	-	-	-	-	38	0	0	51	0	0	37	6	16.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0	0	1	1.421052632	1.421052632	1	NA	NA	1	NA	NA	1	1	NA	1	1	1	1	3.18E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	22352085	A	C	-	-	-	-	-	-	62	0	0	44	0	0	30	5	16.7	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	5.384331439	2	3	1	2	1	0.615668561	NA	4	NA	2	NA	0.384331439	0	NA	0	2.030095631	2.030095631	1	NA	NA	0	NA	NA	1	NA	NA	1	1	1	1	0.000000401	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	42058743	A	T	CEACAM21	ENST00000407170	r.?	-	-	intronic	45	0	0	44	0	0	23	4	17.4	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	4.7646161	6	2	3	2	3	0.2353839	1	3	NA	2	NA	0.7646161	NA	0	NA	0	2.222315789	2.222315789	1	NA	NA	0	NA	NA	1	NA	NA	1	1	1	1	0.00000513	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	11256548	C	A	-	-	-	-	-	-	44	0	0	25	0	0	28	4	14.3	0	0	NA	2	0	0	0	0	NA	1	FALSE	FALSE	3	4.362325493	2	2	1	2	1	0.637674507	NA	3	NA	2	NA	0.362325493	0	NA	0	1.59219851	1.59219851	1	0	NA	0	NA	NA	1	NA	NA	1	1	1	1	0.0000116	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	9	138249861	G	C	-	-	-	-	-	-	29	0	0	33	3	9.1	18	3	16.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	8	6.675936267	5	3	3	3	1	0.324063733	NA	4	NA	3	NA	0.675936267	0.909273453	0.909273453	1	2.245793637	2.245793637	1	NA	NA	1	NA	NA	0	4	NA	1	1	0.000609557	1	0.0000964	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	12673991	G	T	-	-	-	-	-	-	34	0	0	30	0	0	19	5	26.3	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3	4.362325493	2	2	1	2	1	0.637674507	NA	3	NA	2	NA	0.362325493	0	NA	0	2.928309149	1.239587498	2.362325493	NA	NA	0	NA	NA	1	NA	NA	1	1	1	1	3.43E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	5	138851630	G	C	TMEM173	CCDS4215.1	r.?	-	-	downstream	32	0	0	31	0	0	25	3	12	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	0	0	1	1.052631579	1.052631579	1	NA	NA	1	NA	NA	1	1	NA	1	1	1	1	0.00026475	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	139014784	G	A	-	-	-	-	-	-	63	0	0	49	0	0	33	4	12.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	2.277661109	2	1	1	1	1	0.722338891	NA	2	NA	1	NA	0.277661109	0	0	1	1.095000503	1.095000503	1	NA	NA	1	NA	NA	0	1	NA	1	1	1	1	0.0000228	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	51026812	C	A	-	-	-	-	-	-	56	0	0	54	0	0	47	7	14.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	5	3	3	3	2	1	1	NA	NA	NA	NA	NA	NA	0	0	1	1.754017544	1.754017544	1	NA	NA	1	NA	NA	0	1	NA	1	1	1	1	4.12E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	142671506	C	G	PAQR9	ENST00000492509	r.?	-	-	intronic	44	0	0	39	3	7.7	30	4	13.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.351371459	5	2	3	1	2	0.648628541	1	2	NA	2	NA	0.351371459	NA	0.411440832	0.411440832	1	1.565666667	1.565666667	1	NA	NA	0	NA	NA	1	4	NA	1	1	0.000998458	1	0.0000154	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	20	58089086	T	A	-	-	-	-	-	-	44	0	0	61	1	1.6	54	7	13	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6	5	3	3	3	2	1	1	NA	NA	NA	NA	NA	NA	0.127872255	0.127872255	1	1.530350877	1.530350877	1	NA	NA	1	NA	NA	0	4	NA	1	1	0.263440347	1	1.13E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	19	43489036	C	G	PSG1	ENST00000449000	r.?	-	-	intronic	33	0	0	37	11	29.7	23	5	21.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.7646161	6	2	3	2	3	0.2353839	1	3	NA	2	NA	0.7646161	NA	2.006719724	1.003359862	2	2.771508772	0.923836257	3	NA	NA	0	NA	NA	1	4	NA	1	1	3.70E-17	1	9.75E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	150594905	C	T	-	-	-	-	-	-	71	0	0	91	5	5.5	49	7	14.3	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.402297358	3.60351971	4	3	0	0	0.597702642	0.39648029	5	4	0	0	0.402297358	0.60351971	0.351687233	0.874197223	0.402297358	1.483689283	1.483689283	1	NA	NA	1	NA	NA	0	4	NA	1	1	0.000101674	1	5.58E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	151981039	A	C	MBNL1	CCDS3165.1	r.?	-	-	upstream	75	0	0	62	3	4.8	37	4	10.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3.339473093	5	2	3	1	2	0.660526907	1	2	NA	2	NA	0.339473093	NA	0.255911475	0.753849068	0.339473093	1.271368421	1.271368421	1	NA	NA	0	NA	NA	1	4	NA	1	1	0.003793816	1	0.0000362	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	152096431	A	G	MBNL1	CCDS3165.1	r.?	-	-	intronic	75	0	0	45	0	0	42	5	11.9	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3.339473093	5	2	3	1	2	0.660526907	1	2	NA	2	NA	0.339473093	NA	0	NA	0	1.400859649	1.400859649	1	NA	NA	0	NA	NA	1	NA	NA	1	1	1	1	0.00000228	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	154220786	T	A	-	-	-	-	-	-	66	0	0	50	0	0	34	3	8.8	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3.339473093	5	2	3	1	2	0.660526907	1	2	NA	2	NA	0.339473093	NA	0	NA	0	1.035929825	1.035929825	1	NA	NA	0	NA	NA	1	NA	NA	1	1	1	1	0.000666058	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	21	15577168	A	G	LIPI	CCDS13564.1	r.?	-	-	intronic	59	0	0	46	0	0	29	4	13.8	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	4.55136616	5	2	3	2	2	0.44863384	1	3	NA	2	NA	0.55136616	NA	0	NA	0	1.624526316	1.624526316	1	NA	NA	0	NA	NA	1	NA	NA	1	1	1	1	0.0000134	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	21	35426988	G	C	-	-	-	-	-	-	39	0	0	54	0	0	47	7	14.9	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	4.559012765	5	2	3	2	2	0.440987235	1	3	NA	2	NA	0.559012765	NA	0	NA	0	1.754017544	1.754017544	1	NA	NA	0	NA	NA	1	NA	NA	1	1	1	1	4.12E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	158457447	A	G	MFSD1	ENST00000486568	r.?	-	-	intronic	41	0	0	41	5	12.2	19	5	26.3	2	0	0	0	0	NA	0	0	NA	1	TRUE	FALSE	3.339473093	5	2	3	1	2	0.660526907	1	2	NA	2	NA	0.339473093	NA	0.650441665	0.650441665	1	3.096017544	1.032005848	3	NA	NA	0	NA	NA	1	4	NA	1	1	0.00000202	1	3.43E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	163911978	C	T	-	-	-	-	-	-	50	0	0	40	0	0	31	5	16.1	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	2.854484501	2.277661109	2	1	0	1	0.145515499	0.722338891	2	2	1	1	0.854484501	0.277661109	0	NA	0	1.45698414	1.45698414	1	NA	NA	0	NA	NA	0	NA	NA	1	1	1	1	0.000000476	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	21	36786894	G	A	-	-	-	-	-	-	49	0	0	42	0	0	39	5	12.8	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	4.559012765	5	2	3	2	2	0.440987235	1	3	NA	2	NA	0.559012765	NA	0	NA	0	1.506807018	1.506807018	1	NA	NA	0	NA	NA	1	NA	NA	1	1	1	1	0.00000156	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	6	168811603	C	T	ENSG00000232038	ENST00000428885	r.?	-	-	intronic	20	0	0	20	13	65	8	4	50	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2	2	2	2	0	0	1	1	NA	NA	NA	NA	NA	NA	2.594810379	1.29740519	2	4.385964912	2.192982456	2	NA	NA	1	NA	NA	1	4	NA	1	1	9.16E-26	1	4.31E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	22	27415274	A	C	-	-	-	-	-	-	48	0	0	41	0	0	25	3	12	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3.292921926	5	3	4	0	1	0.707078074	1	3	NA	1	NA	0.292921926	NA	0	NA	0	1.412631579	1.412631579	1	NA	NA	0	NA	NA	1	NA	NA	1	1	1	1	0.00026475	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	4	171700783	T	C	-	-	-	-	-	-	54	0	0	46	4	8.7	29	5	17.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	2.854484501	2.277661109	2	1	0	1	0.145515499	0.722338891	2	2	1	1	0.854484501	0.277661109	0.421645541	0.493450192	0.854484501	1.556529641	1.556529641	1	NA	NA	0	NA	NA	0	4	NA	1	1	0.0000862	1	0.000000336	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	22	34883480	G	A	-	-	-	-	-	-	49	0	0	37	0	0	35	6	17.1	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3.292921926	5	3	4	0	1	0.707078074	1	3	NA	1	NA	0.292921926	NA	0	NA	0	2.013	2.013	1	NA	NA	0	NA	NA	1	NA	NA	1	1	1	1	2.24E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	22	18828506	G	T	-	-	-	-	-	-	10	0	0	17	1	5.9	19	3	15.8	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	3.292921926	5	3	4	0	1	0.707078074	1	3	NA	1	NA	0.292921926	NA	0.311811336	NA	0	1.859964912	1.859964912	1	NA	NA	0	NA	NA	1	NA	NA	1	1	0.081683532	1	0.000114071	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	176544640	A	T	-	-	-	-	-	-	50	0	0	45	0	0	32	3	9.4	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0	0	1	1.012561404	1.012561404	1	NA	NA	1	NA	NA	1	1	NA	1	1	1	1	0.000556213	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	7854970	A	T	-	-	-	-	-	-	45	0	0	59	0	0	41	5	12.2	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	6.732316688	4.32434803	5	2	1	2	0.267683312	0.67565197	5	3	2	2	0.732316688	0.32434803	0	NA	0	1.353745898	1.353745898	1	NA	NA	0	NA	NA	0	NA	NA	1	1	1	1	0.00000202	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	7875438	T	G	PNPLA4	CCDS14129.1	r.?	-	-	intronic	54	0	0	72	0	0	46	5	10.9	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	6.732316688	4.32434803	5	2	1	2	0.267683312	0.67565197	5	3	2	2	0.732316688	0.32434803	0	NA	0	1.209494286	1.209494286	1	NA	NA	0	NA	NA	0	NA	NA	1	1	1	1	0.00000361	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	21125021	G	A	-	-	-	-	-	-	45	0	0	68	0	0	47	7	14.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7.364463357	4.32434803	5	2	2	2	0.635536643	0.67565197	6	3	2	2	0.364463357	0.32434803	0	0	1	1.6533454	1.6533454	1	NA	NA	0	NA	NA	0	1	NA	1	1	1	1	4.12E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	32984713	A	T	DMD	CCDS14233.1	r.?	-	-	intronic	55	0	0	53	0	0	37	4	10.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	7	4.32434803	4	2	3	2	1	0.67565197	NA	3	NA	2	NA	0.32434803	0	0	1	1.198398008	1.198398008	1	NA	NA	1	NA	NA	0	1	NA	1	1	1	1	0.0000362	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	35391418	G	T	-	-	-	-	-	-	60	0	0	65	0	0	46	7	15.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6.241955165	4.32434803	4	2	2	2	0.758044835	0.67565197	4	3	3	2	0.241955165	0.32434803	0	0	1	1.686634234	1.686634234	1	NA	NA	0	NA	NA	0	1	NA	1	1	1	1	3.53E-09	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	187270433	C	T	-	-	-	-	-	-	61	0	0	46	0	0	29	4	13.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0	0	1	1.486526316	1.486526316	1	NA	NA	1	NA	NA	1	1	NA	1	1	1	1	0.0000134	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	29723872	G	T	IL1RAPL1	CCDS14218.1	r.?	-	-	intronic	35	0	0	56	3	5.4	29	4	13.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	5	4.32434803	4	2	1	2	1	0.67565197	NA	3	NA	2	NA	0.32434803	0.377568862	0.377568862	1	1.531286344	1.531286344	1	NA	NA	0	NA	NA	0	4	NA	1	1	0.00284314	1	0.0000134	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	3	191703747	G	C	-	-	-	-	-	-	64	0	0	47	2	4.3	45	5	11.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	3	5	2	3	1	2	1	1	NA	NA	NA	NA	NA	NA	0.214656687	0.214656687	1	1.306684211	1.306684211	1	NA	NA	0	NA	NA	1	4	NA	1	1	0.02328732	1	0.00000323	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	35418024	A	T	-	-	-	-	-	-	58	0	0	64	1	1.6	45	5	11.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6.241955165	4.32434803	4	2	2	2	0.758044835	0.67565197	4	3	3	2	0.241955165	0.32434803	0.131743538	0.131743538	1	1.231686842	1.231686842	1	NA	NA	1	NA	NA	0	4	NA	1	1	0.274433592	1	0.00000323	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	37308379	G	A	PRRG1	CCDS14239.1	r.?	-	-	intronic	39	0	0	64	0	0	45	5	11.1	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6.241955165	4.32434803	4	2	2	2	0.758044835	0.67565197	4	3	3	2	0.241955165	0.32434803	0	0	1	1.231686842	1.231686842	1	NA	NA	1	NA	NA	0	1	NA	1	1	1	1	0.00000323	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	45104746	A	G	-	-	-	-	-	-	61	0	0	72	1	1.4	49	5	10.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	6.241955165	4.32434803	4	2	2	2	0.758044835	0.67565197	4	3	3	2	0.241955165	0.32434803	0.115275596	0.115275596	1	1.131820341	1.131820341	1	NA	NA	0	NA	NA	0	4	NA	1	1	0.302953399	1	0.00000496	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	76090445	C	G	-	-	-	-	-	-	30	0	0	22	0	0	29	5	17.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	1.38822692	1.304475247	1	1	0	0	0.61177308	0.695524753	2	2	0	0	0.38822692	0.304475247	0	0	1	1.389141672	1.389141672	1	NA	NA	1	NA	NA	1	1	NA	1	1	1	1	0.000000336	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	94239031	C	A	-	-	-	-	-	-	58	0	0	36	0	0	26	5	19.2	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	1.44088429	3	1	2	0	1	0.55911571	1	1	NA	1	NA	0.44088429	NA	0	NA	0	1.876210526	1.876210526	1	NA	NA	0	NA	NA	1	NA	NA	1	1	1	1	0.000000188	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	2	215141186	C	T	SPAG16	CCDS2396.1	r.?	-	-	intronic	53	0	0	42	0	0	36	5	13.9	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0	0	1	1.497298246	1.497298246	1	NA	NA	1	NA	NA	1	1	NA	1	1	1	1	0.00000104	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	116381815	G	T	-	-	-	-	-	-	34	0	0	27	0	0	30	4	13.3	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	1.474974183	2	1	2	0	0	0.525025817	1	2	NA	0	NA	0.474974183	NA	0	NA	0	1.166666667	1.166666667	1	NA	NA	0	NA	NA	1	NA	NA	1	1	1	1	0.0000154	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	124065515	C	A	ODZ1	CCDS14609.1	r.?	-	-	intronic	43	0	0	42	0	0	36	6	16.7	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.402297358	3.60351971	4	3	0	0	0.597702642	0.39648029	5	4	0	0	0.402297358	0.60351971	0	0	1	1.732700072	1.732700072	1	NA	NA	0	NA	NA	0	1	NA	1	1	1	1	2.68E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	129552814	C	A	-	-	-	-	-	-	59	0	0	60	0	0	29	4	13.8	0	0	NA	0	0	NA	0	0	NA	1	FALSE	FALSE	4.402297358	3.60351971	4	3	0	0	0.597702642	0.39648029	5	4	0	0	0.402297358	0.60351971	0	NA	0	1.431812036	1.431812036	1	NA	NA	1	NA	NA	0	NA	NA	1	1	1	1	0.0000134	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	236351401	G	A	GPR137B	CCDS1609.1	r.?	-	-	intronic	49	0	0	44	0	0	33	5	15.2	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0	0	1	1.637333333	1.637333333	1	NA	NA	1	NA	NA	1	1	NA	1	1	1	1	0.00000066	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	X	136728958	A	T	-	-	-	-	-	-	67	0	0	70	0	0	38	6	15.8	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4.402297358	3.60351971	4	3	0	0	0.597702642	0.39648029	5	4	0	0	0.402297358	0.60351971	0	0	1	1.639321027	1.639321027	1	NA	NA	1	NA	NA	0	1	NA	1	1	1	1	3.76E-08	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
PD9852b	1	244378482	G	C	-	-	-	-	-	-	29	0	0	47	0	0	26	3	11.5	0	0	NA	0	0	NA	0	0	NA	1	TRUE	FALSE	4	4	2	2	2	2	1	1	NA	NA	NA	NA	NA	NA	0	0	1	1.23877193	1.23877193	1	NA	NA	1	NA	NA	1	1	NA	1	1	1	1	0.000298167	1	NO	inad_validation_depth	inad_validation_depth	NA	NA
		NA									NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	FALSE	FALSE	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1	NA	NA	1	NA	NA	1	NA	NA	1	NA	NA	NA	NA	NA	NA	NA	NA	NO	inad_validation_depth	inad_validation_depth	NA	NA