Alignments between the primary assembly and alternate loci or patches.
Each glyph represents a region of alignment between the primary assembly and alternate locus or patch. This is a gapped alignment. Match regions are shown as solid regions in the glyph, whereas gaps in the alignment are shown as gaps, as if they were introns within a gene.
NGalign alignment program
Data generated by the Genome Reference Consortium. Contact us via genomereference.org or by emailing grc-help@sanger.ac.uk
Church DM, Schneider VA, Graves T, Auger K, Cunningham F, et al. (2011) Modernizing Reference Genome Assemblies. PLoS Biol 9(7): e1001091. doi:10.1371/journal.pbio.1001091