GeneFinder predictions can be saved as
Sequence objects by chosing [Fix temp_gene] from the GeneFind..
menu. Genes can be removed by picking a gene on the fmap and selecting
[Remove Gene]. Both of these operations require write access to
the database.
Gene predictions can be dumped into an EMBL feature table by selecting
the [EMBL dump] option from the menu which is activated by
picking the white fmap background. The option [Import Sequence]
from the same menu allows a sequence file (in plain or FASTA format)
to be read into the fmap. Both these operations do not require write
access.
An example of an EMBL dump is given below. Note that the /organism identifier is C. elegans by default.
XX FH Key Location/Qualifiers FH FT source 1..7079 FT /organism="Caenorhabditis elegans" FT /clone="EM:X56564" FT CDS join(911..925,961..986, FT 1027..1099,1139..1214,1260..1319, FT 1412..1518,1566..6467) FT /gene="rpb1" FT CDS join(911..925,961..986, FT 1027..1099,1139..1214,1260..1319, FT 1412..1518,1566..6467) FT /product="temp_gene" XX SQ Sequence 7079 BP; 2024 A; 1386 C; 1394 G; 2275 T; 0 other; aagcttctag agccactcct gacattaaag aacagcatgc taagaaaccg aagcgaaagc acacccgttc aacagtacct acaagcaatg ttgaaccagt ttctcaacct caaccctctc ctgacaaaat cgtttctagc cccaatccgc catcagcgaa aagggaaaaa aagaaacgtc gcaaaagctc gatgtcttct tccattacca ......etc.